Citrus Sinensis ID: 039385

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MFWYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADFQ
Secondary Structure (PSIPRED)
ccccccccccccEEEEccccEEEEEEEccccccccHHHHHccccccHHHHHHHHHccccccccccccccccEEEcccccHHHHHHHHHHccccEEEEEcccccEEEEEEHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccEEEEccccEEEEEEEHHHHHHccHHHHHHHccccHHHHHHHHHHcHHHccccccccccEEEEcccccHHHHHHHHHHcccEEEEEEcccccEEEEEEHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mfwykkpnvernsislgngwrligtfsasdlrgcHYAVLQTWLPLTALEFTQQvltsplfsesntTQQRELLTcqvdsplseVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADFQ
Flexible Loop (DISEMBL)
mfwykkpnvernsislgngWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADFQ
Low Complexity Region (SEG)
MFWYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADFQ
Disordered region (IsUnstruct)
**WY****VERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSE*****QRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA***
Disordered Region (DISOPRED)
*F*****NVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQ******************LTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL****
Disordered Region (DISEMBL)
MFWYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADFQ
Disordered Region (DISPRO)
MFWYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADFQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFWYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
Q8GXI9	357	SNF1-related protein kina	yes	no	0.849	0.299	0.551	3e-28
Q9XI37	352	SNF1-related protein kina	no	no	0.753	0.269	0.523	1e-24
Q9MYP4	514	5'-AMP-activated protein	yes	no	0.373	0.091	0.425	0.0005
Q8BGM7	489	5'-AMP-activated protein	yes	no	0.373	0.096	0.425	0.0006
Q9UGI9	489	5'-AMP-activated protein	yes	no	0.373	0.096	0.425	0.0007
Q2LL38	497	5'-AMP-activated protein	yes	no	0.373	0.094	0.425	0.0008

>sp|Q8GXI9|PV42B_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42b OS=Arabidopsis thaliana GN=PV42B PE=2 SV=1

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 80/107 (74%)

Query: 17  GNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQV 76
           G   R++GTFSASDL+GCH A L++WLPL ALEF +++  + LF+ + +T  REL+TC V
Sbjct: 245 GKNRRVVGTFSASDLKGCHLATLRSWLPLNALEFVEKIPRTLLFTAATSTPGRELVTCHV 304

Query: 77  DSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA 123
            S L++VI    TK VHRVWVVDQ   L GLVSLTD+I V+R+++L+
Sbjct: 305 TSTLAQVIHMVTTKRVHRVWVVDQNGGLQGLVSLTDIIAVVRSALLS 351

Plays redundant role with PV42a in regulating male gametogenesis and pollen tube guidance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI37|PV42A_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42a OS=Arabidopsis thaliana GN=PV42A PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 75/105 (71%), Gaps = 10/105 (9%)

Query: 17  GNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQV 76
           G   ++IGTFSA+DL+GC    LQTWLPLTALEFT          E  + ++RE+++C V
Sbjct: 257 GRHRKVIGTFSATDLKGCRLPELQTWLPLTALEFT----------EKTSGKEREVVSCGV 306

Query: 77  DSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI 121
           +S + E I K +T+ VHRVWV+DQQ LL G+VSLTD+IR LR+++
Sbjct: 307 ESTMEEAIEKVVTRGVHRVWVMDQQGLLQGVVSLTDIIRSLRSTL 351

Plays redundant role with PV42b in regulating male gametogenesis and pollen tube guidance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MYP4|AAKG3_PIG 5'-AMP-activated protein kinase subunit gamma-3 OS=Sus scrofa GN=PRKAG3 PE=1 SV=2

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 34/47 (72%)

Query: 71  LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
           +L+CQ    L EVI + + + VHR+ +VD+ + LLG+VSL+D+++ L
Sbjct: 456 VLSCQPHETLGEVIDRIVREQVHRLVLVDETQHLLGVVSLSDILQAL 502

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

>sp|Q8BGM7|AAKG3_MOUSE 5'-AMP-activated protein kinase subunit gamma-3 OS=Mus musculus GN=Prkag3 PE=1 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 33/47 (70%)

Query: 71  LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
           +L+CQ    L EVI +   + VHR+ +VD+ + LLG+VSL+D+++ L
Sbjct: 431 VLSCQPHESLGEVIDRIAREQVHRLVLVDETQHLLGVVSLSDILQAL 477

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q9UGI9|AAKG3_HUMAN 5'-AMP-activated protein kinase subunit gamma-3 OS=Homo sapiens GN=PRKAG3 PE=1 SV=3

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 33/47 (70%)

Query: 71  LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
           +L+CQ    L EVI +   + VHR+ +VD+ + LLG+VSL+D+++ L
Sbjct: 431 VLSCQPHESLGEVIDRIAREQVHRLVLVDETQHLLGVVSLSDILQAL 477

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|Q2LL38|AAKG3_BOVIN 5'-AMP-activated protein kinase subunit gamma-3 OS=Bos taurus GN=PRKAG3 PE=2 SV=2

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 33/47 (70%)

Query: 71  LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
           +L+CQ    L EVI +   + VHR+ +VD+ + LLG+VSL+D+++ L
Sbjct: 439 VLSCQPHETLGEVIDRIAREQVHRLVLVDETQHLLGVVSLSDILQAL 485

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
255553209	403	AMP-activated protein kinase, gamma regu	0.857	0.267	0.636	4e-35
1113941	379	Pv42p [Phaseolus vulgaris]	0.857	0.284	0.607	2e-32
356555078	384	PREDICTED: SNF1-related protein kinase r	0.849	0.278	0.620	6e-32
357455259	394	SNF4b [Medicago truncatula] gi|355486958	0.896	0.286	0.567	3e-31
32364484	382	SNF4b [Medicago truncatula]	0.857	0.282	0.575	2e-30
356550620	377	PREDICTED: SNF1-related protein kinase r	0.809	0.270	0.609	4e-30
147794673	361	hypothetical protein VITISV_035347 [Viti	0.857	0.299	0.596	1e-29
225442939	361	PREDICTED: SNF1-related protein kinase r	0.857	0.299	0.596	2e-29
5902384	399	Hypothetical protein [Arabidopsis thalia	0.849	0.268	0.551	2e-26
15220051	402	cystathionine beta-synthase domain-conta	0.849	0.266	0.551	2e-26

>gi|255553209|ref|XP_002517647.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis] gi|223543279|gb|EEF44811.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 88/110 (80%), Gaps = 2/110 (1%)

Query: 17  GNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQ--RELLTC 74
           G G +LIGTFSA+DLRGCH   LQTWLPLTALEFT+ V ++P+++  N +    REL+TC
Sbjct: 290 GKGRKLIGTFSATDLRGCHLTALQTWLPLTALEFTESVASAPIYASPNASNMPPRELVTC 349

Query: 75  QVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILAD 124
            + SPL EVI KA+TKHVHRVW VDQQ  L+GLVSLTD+I+V+R S+L+D
Sbjct: 350 YLGSPLEEVIDKAVTKHVHRVWAVDQQGFLVGLVSLTDIIKVVRASLLSD 399

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1113941|gb|AAA91175.1| Pv42p [Phaseolus vulgaris]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/112 (60%), Positives = 92/112 (82%), Gaps = 4/112 (3%)

Query: 17  GNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNT----TQQRELL 72
           G   +LIGTFSA+DLRGCH + L++WL ++AL FT++V +SPL+SES+     + +REL+
Sbjct: 264 GRCRKLIGTFSATDLRGCHISSLKSWLGISALAFTEEVRSSPLYSESDMQNRGSSRRELV 323

Query: 73  TCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILAD 124
           TC  +SPLSEVI KA+T HVHRVWVVDQ+ LL+G+VSLTD+IRV+R S+L+D
Sbjct: 324 TCYAESPLSEVIEKAVTSHVHRVWVVDQEGLLVGVVSLTDVIRVIRHSLLSD 375

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555078|ref|XP_003545866.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a-like [Glycine max]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 90/108 (83%), Gaps = 1/108 (0%)

Query: 17  GNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNT-TQQRELLTCQ 75
           G   +LIGTFSA+DLRGCH A L++WL ++AL FT++V +SPL++ES+T   +REL+TC 
Sbjct: 271 GRCRKLIGTFSATDLRGCHVATLKSWLGISALAFTEEVASSPLYTESDTQINRRELVTCF 330

Query: 76  VDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA 123
            +SPLSEVI KA+T+HVHRVWVVD + LL+G+VSLTD+IRV R S+L+
Sbjct: 331 AESPLSEVIEKAVTRHVHRVWVVDHEGLLVGVVSLTDVIRVTRHSMLS 378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455259|ref|XP_003597910.1| SNF4b [Medicago truncatula] gi|355486958|gb|AES68161.1| SNF4b [Medicago truncatula]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/118 (56%), Positives = 91/118 (77%), Gaps = 5/118 (4%)

Query: 12  NSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNT-----T 66
           NS   G   +L+GTFSA+DLRGC+   L++WL ++AL FT+Q+ TSPL++ S+T     T
Sbjct: 274 NSFPYGRCRKLVGTFSATDLRGCYINTLKSWLGISALAFTEQIATSPLYTTSDTQNDIGT 333

Query: 67  QQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILAD 124
            +REL+TC  +S LSEVI KA+  HVHRVWVVDQ+ LL+G+VSLTD+IRV+R S+L+D
Sbjct: 334 PKRELVTCYAESTLSEVIDKAVANHVHRVWVVDQEGLLVGVVSLTDVIRVIRQSMLSD 391

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32364484|gb|AAO61675.1| SNF4b [Medicago truncatula]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/113 (57%), Positives = 89/113 (78%), Gaps = 5/113 (4%)

Query: 17  GNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNT-----TQQREL 71
           G   +L+GTFSA+DLRGC+   L++WL ++AL FT+Q+ TSPL++ S+T     T +REL
Sbjct: 267 GRCRKLVGTFSATDLRGCYINTLKSWLGISALAFTEQIATSPLYTTSDTQNDIGTPKREL 326

Query: 72  LTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILAD 124
           +TC  +S LSEVI KA+  HVHRVWVVDQ+ LL+G+VSLTD+IRV+R S+L+D
Sbjct: 327 VTCYAESTLSEVIDKAVANHVHRVWVVDQEGLLVGVVSLTDVIRVIRQSMLSD 379

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550620|ref|XP_003543683.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a-like [Glycine max]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 85/105 (80%), Gaps = 3/105 (2%)

Query: 17  GNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQ---RELLT 73
           G   +LIGTFS++DLRGCH A L++WL ++AL FT+ V +SPL++ES +  Q   REL+T
Sbjct: 262 GRCRKLIGTFSSTDLRGCHIATLKSWLGISALAFTEDVASSPLYTESESDTQINRRELVT 321

Query: 74  CQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118
           C  +SPLSEVI KA+T+HVHRVW+VD Q LL+G+VSLTD+IRV+R
Sbjct: 322 CFAESPLSEVIEKAVTRHVHRVWMVDHQGLLVGVVSLTDVIRVIR 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794673|emb|CAN64662.1| hypothetical protein VITISV_035347 [Vitis vinifera]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 83/109 (76%), Gaps = 1/109 (0%)

Query: 17  GNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQ-RELLTCQ 75
           G G +LIGTFSA+DLRGC    LQ+WLPL+ ++FT++V TSPL   +N+    REL+TC 
Sbjct: 249 GKGRKLIGTFSATDLRGCPVTQLQSWLPLSVMDFTEKVTTSPLHGSTNSRSPWRELVTCF 308

Query: 76  VDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILAD 124
            +S L E I KA+ KHVHRVWVVD+Q  L+GLVSLTDMIR +R S+L+D
Sbjct: 309 AESCLGEAIDKAVAKHVHRVWVVDRQGSLVGLVSLTDMIRAVRISLLSD 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442939|ref|XP_002265369.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Vitis vinifera] gi|297743469|emb|CBI36336.3| unnamed protein product [Vitis vinifera]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 83/109 (76%), Gaps = 1/109 (0%)

Query: 17  GNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQ-RELLTCQ 75
           G G +LIGTFSA+DLRGC    LQ+WLPL+ ++FT++V TSPL   +N+    REL+TC 
Sbjct: 249 GKGRKLIGTFSATDLRGCPVTQLQSWLPLSVMDFTEKVSTSPLHGSTNSRSPWRELVTCF 308

Query: 76  VDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILAD 124
            +S L E I KA+ KHVHRVWVVD+Q  L+GLVSLTDMIR +R S+L+D
Sbjct: 309 AESCLGEAIDKAVAKHVHRVWVVDRQGSLVGLVSLTDMIRAVRISLLSD 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5902384|gb|AAD55486.1|AC009322_26 Hypothetical protein [Arabidopsis thaliana]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 80/107 (74%)

Query: 17  GNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQV 76
           G   R++GTFSASDL+GCH A L++WLPL ALEF +++  + LF+ + +T  REL+TC V
Sbjct: 287 GKNRRVVGTFSASDLKGCHLATLRSWLPLNALEFVEKIPRTLLFTAATSTPGRELVTCHV 346

Query: 77  DSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA 123
            S L++VI    TK VHRVWVVDQ   L GLVSLTD+I V+R+++L+
Sbjct: 347 TSTLAQVIHMVTTKRVHRVWVVDQNGGLQGLVSLTDIIAVVRSALLS 393

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220051|ref|NP_178126.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana] gi|332198234|gb|AEE36355.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 80/107 (74%)

Query: 17  GNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQV 76
           G   R++GTFSASDL+GCH A L++WLPL ALEF +++  + LF+ + +T  REL+TC V
Sbjct: 290 GKNRRVVGTFSASDLKGCHLATLRSWLPLNALEFVEKIPRTLLFTAATSTPGRELVTCHV 349

Query: 77  DSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA 123
            S L++VI    TK VHRVWVVDQ   L GLVSLTD+I V+R+++L+
Sbjct: 350 TSTLAQVIHMVTTKRVHRVWVVDQNGGLQGLVSLTDIIAVVRSALLS 396

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:2037853	352	AT1G15330 "AT1G15330" [Arabido	0.833	0.298	0.491	3.8e-23
UNIPROTKB|B4DT70	305	PRKAG3 "cDNA FLJ51967, highly	0.373	0.154	0.425	0.00012
ZFIN|ZDB-GENE-040426-2188	330	prkag1 "protein kinase, AMP-ac	0.373	0.142	0.361	0.00014
UNIPROTKB|Q9MYP4	514	PRKAG3 "5'-AMP-activated prote	0.373	0.091	0.425	0.00017
UNIPROTKB|Q9UGI9	489	PRKAG3 "5'-AMP-activated prote	0.373	0.096	0.425	0.00025
MGI|MGI:1891343	489	Prkag3 "protein kinase, AMP-ac	0.373	0.096	0.425	0.00025
RGD|1308698	493	Prkag3 "protein kinase, AMP-ac	0.373	0.095	0.425	0.00026
UNIPROTKB|Q2LL38	497	PRKAG3 "5'-AMP-activated prote	0.373	0.094	0.425	0.00026
UNIPROTKB|F1P817	514	PRKAG3 "Uncharacterized protei	0.373	0.091	0.425	0.00027
UNIPROTKB|Q604Y3	449	MCA2402 "CBS domain protein" [	0.404	0.113	0.396	0.00037

TAIR|locus:2037853 AT1G15330 "AT1G15330" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 58/118 (49%), Positives = 83/118 (70%)

Query:     7 PNV-ERNSISLGNGW--RLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSES 63
             P++ + + + L NG   ++IGTFSA+DL+GC    LQTWLPLTALEFT          E 
Sbjct:   244 PDIAQEDHLQLVNGRHRKVIGTFSATDLKGCRLPELQTWLPLTALEFT----------EK 293

Query:    64 NTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI 121
              + ++RE+++C V+S + E I K +T+ VHRVWV+DQQ LL G+VSLTD+IR LR+++
Sbjct:   294 TSGKEREVVSCGVESTMEEAIEKVVTRGVHRVWVMDQQGLLQGVVSLTDIIRSLRSTL 351

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0003006 "developmental process involved in reproduction" evidence=IMP

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0010183 "pollen tube guidance" evidence=IMP

GO:0048443 "stamen development" evidence=IMP

UNIPROTKB|B4DT70 PRKAG3 "cDNA FLJ51967, highly similar to 5'-AMP-activated protein kinase subunit gamma-3" [Homo sapiens (taxid:9606)]

 Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
 Identities = 20/47 (42%), Positives = 33/47 (70%)

Query:    71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
             +L+CQ    L EVI +   + VHR+ +VD+ + LLG+VSL+D+++ L
Sbjct:   247 VLSCQPHESLGEVIDRIAREQVHRLVLVDETQHLLGVVSLSDILQAL 293

GO:0016301 "kinase activity" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0015758 "glucose transport" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

ZFIN|ZDB-GENE-040426-2188 prkag1 "protein kinase, AMP-activated, gamma 1 non-catalytic subunit" [Danio rerio (taxid:7955)]

 Score = 99 (39.9 bits), Expect = 0.00014, P = 0.00014
 Identities = 17/47 (36%), Positives = 32/47 (68%)

Query:    71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
             +LTC+    L  +I + +   VHR+ +VD+Q ++ G+VSL+D+++ L
Sbjct:   274 VLTCRASETLQAIINRLVEAEVHRLVIVDEQEVVKGIVSLSDILQAL 320

GO:0005575 "cellular_component" evidence=ND

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

UNIPROTKB|Q9MYP4 PRKAG3 "5'-AMP-activated protein kinase subunit gamma-3" [Sus scrofa (taxid:9823)]

 Score = 101 (40.6 bits), Expect = 0.00017, P = 0.00017
 Identities = 20/47 (42%), Positives = 34/47 (72%)

Query:    71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
             +L+CQ    L EVI + + + VHR+ +VD+ + LLG+VSL+D+++ L
Sbjct:   456 VLSCQPHETLGEVIDRIVREQVHRLVLVDETQHLLGVVSLSDILQAL 502

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q9UGI9 PRKAG3 "5'-AMP-activated protein kinase subunit gamma-3" [Homo sapiens (taxid:9606)]

 Score = 99 (39.9 bits), Expect = 0.00025, P = 0.00025
 Identities = 20/47 (42%), Positives = 33/47 (70%)

Query:    71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
             +L+CQ    L EVI +   + VHR+ +VD+ + LLG+VSL+D+++ L
Sbjct:   431 VLSCQPHESLGEVIDRIAREQVHRLVLVDETQHLLGVVSLSDILQAL 477

GO:0005524 "ATP binding" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0015758 "glucose transport" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0004679 "AMP-activated protein kinase activity" evidence=TAS

GO:0007243 "intracellular protein kinase cascade" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0046320 "regulation of fatty acid oxidation" evidence=TAS

GO:0019901 "protein kinase binding" evidence=IDA

MGI|MGI:1891343 Prkag3 "protein kinase, AMP-activated, gamma 3 non-catatlytic subunit" [Mus musculus (taxid:10090)]

 Score = 99 (39.9 bits), Expect = 0.00025, P = 0.00025
 Identities = 20/47 (42%), Positives = 33/47 (70%)

Query:    71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
             +L+CQ    L EVI +   + VHR+ +VD+ + LLG+VSL+D+++ L
Sbjct:   431 VLSCQPHESLGEVIDRIAREQVHRLVLVDETQHLLGVVSLSDILQAL 477

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0015758 "glucose transport" evidence=IMP

GO:0019901 "protein kinase binding" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

RGD|1308698 Prkag3 "protein kinase, AMP-activated, gamma 3 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 99 (39.9 bits), Expect = 0.00026, P = 0.00026
 Identities = 20/47 (42%), Positives = 33/47 (70%)

Query:    71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
             +L+CQ    L EVI +   + VHR+ +VD+ + LLG+VSL+D+++ L
Sbjct:   435 VLSCQPHESLGEVIDRIAREQVHRLVLVDETQHLLGVVSLSDILQAL 481

GO:0005978 "glycogen biosynthetic process" evidence=IEA;ISO

GO:0015758 "glucose transport" evidence=IEA;ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0004679 "AMP-activated protein kinase activity" evidence=IMP

UNIPROTKB|Q2LL38 PRKAG3 "5'-AMP-activated protein kinase subunit gamma-3" [Bos taurus (taxid:9913)]

 Score = 99 (39.9 bits), Expect = 0.00026, P = 0.00026
 Identities = 20/47 (42%), Positives = 33/47 (70%)

Query:    71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
             +L+CQ    L EVI +   + VHR+ +VD+ + LLG+VSL+D+++ L
Sbjct:   439 VLSCQPHETLGEVIDRIAREQVHRLVLVDETQHLLGVVSLSDILQAL 485

GO:0019901 "protein kinase binding" evidence=IEA

GO:0015758 "glucose transport" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1P817 PRKAG3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 99 (39.9 bits), Expect = 0.00027, P = 0.00027
 Identities = 20/47 (42%), Positives = 33/47 (70%)

Query:    71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
             +L+CQ    L EVI +   + VHR+ +VD+ + LLG+VSL+D+++ L
Sbjct:   456 VLSCQPHESLGEVIDRIAREQVHRLVLVDETQHLLGVVSLSDILQAL 502

GO:0019901 "protein kinase binding" evidence=IEA

GO:0015758 "glucose transport" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA

UNIPROTKB|Q604Y3 MCA2402 "CBS domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 97 (39.2 bits), Expect = 0.00037, P = 0.00037
 Identities = 21/53 (39%), Positives = 38/53 (71%)

Query:    72 LTCQVDSPLSEVIGKALTKH-VHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA 123
             +T + D+P+ E + + L++H +H+V +VD++R L+GLV+ TD+I  L  S+ A
Sbjct:   387 ITARHDAPIVE-LARLLSEHGIHQVPIVDERRKLVGLVTQTDLIAALYRSVPA 438


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.134   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      126       126   0.00091  102 3  11 22  0.47    30
                                                     29  0.40    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  136 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.13u 0.08s 13.21t   Elapsed:  00:00:00
  Total cpu time:  13.13u 0.08s 13.21t   Elapsed:  00:00:00
  Start:  Fri May 10 23:23:33 2013   End:  Fri May 10 23:23:33 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000316001 SubName- Full=Chromosome chr9 scaffold_104, whole genome shotgun sequence; (361 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	126
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	3e-29
pfam00571	57	pfam00571, CBS, CBS domain	2e-07
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	8e-07
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	1e-06
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	5e-05
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	3e-04
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	3e-04
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	6e-04
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	9e-04
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	0.003

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score =  102 bits (256), Expect = 3e-29
 Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 4/96 (4%)

Query: 21  RLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPL 80
           +LIG  SASDL+G   +     L  T          S  F++S+  + R L+TC   S L
Sbjct: 35  KLIGNISASDLKGLLLSPDDLLLYRTITFKEL----SEKFTDSDGVKSRPLITCTPSSTL 90

Query: 81  SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116
            EVI K +   VHRVWVVD++   +G+++LTD+I +
Sbjct: 91  KEVITKLVANKVHRVWVVDEEGKPIGVITLTDIISI 126

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 44.1 bits (105), Expect = 2e-07
 Identities = 15/51 (29%), Positives = 28/51 (54%)

Query: 68  QRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118
             +++T   D+ L E +       + R+ VVD+   L+G+V+L D++R L 
Sbjct: 6   TPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALL 56

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 42.5 bits (101), Expect = 8e-07
 Identities = 14/48 (29%), Positives = 28/48 (58%)

Query: 70  ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
           +++T   D+ L E +       + R+ VVD++  L+G+V+  D+I+ L
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDIIKAL 48

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 14/49 (28%), Positives = 27/49 (55%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
           R+++T   D  ++E +   L   +  + VVD    L+G+V+  D++R L
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRAL 49

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 68  QRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115
            R ++T   D  + E         V R+ VVD    L+G+VSL D+ R
Sbjct: 65  TRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 15/48 (31%), Positives = 28/48 (58%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116
           R+++T   D+ L E     L   + R+ VVD +  L+G+V+ +D++R 
Sbjct: 66  RDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILRA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116
           R+ +T   D  L + + +   + + R+ VVD    L+G+VS +D++R 
Sbjct: 64  RDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLRA 111

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 71  LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115
           LLT   D+ L +         +  + VVD    LLGL+S TD+++
Sbjct: 66  LLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 36.0 bits (84), Expect = 9e-04
 Identities = 14/49 (28%), Positives = 27/49 (55%)

Query: 68  QRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116
             ++ T Q D+ L +V+G  L +    V VVD+   L+GL++ + ++  
Sbjct: 61  LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVDT 109

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 34.8 bits (80), Expect = 0.003
 Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
           ++++T + D+ + + +       V  V VVD  + L+G+++  D++R L
Sbjct: 7   KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGK-LVGIITERDILRAL 54

Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
COG2524	294	Predicted transcriptional regulator, contains C-te	99.7
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.69
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.68
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.68
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.67
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.67
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.6
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.59
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.59
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.59
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.58
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.57
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.57
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.56
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.56
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.56
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.55
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.54
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.54
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.54
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.54
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.54
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.53
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.53
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.53
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.53
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.53
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.52
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.52
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.52
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.52
COG4109	432	Predicted transcriptional regulator containing CBS	99.52
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.51
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.51
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.51
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.51
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.51
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.51
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.51
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.5
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.5
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.5
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.5
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.49
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.49
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.49
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.49
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.49
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.49
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.49
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.48
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.48
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.48
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.48
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.48
COG3620	187	Predicted transcriptional regulator with C-termina	99.48
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.47
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.47
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.47
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.47
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.46
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.46
COG2905	610	Predicted signal-transduction protein containing c	99.45
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.45
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.45
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.44
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.44
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.44
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.43
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.43
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.43
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.42
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.4
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.39
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.39
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.39
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.39
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.39
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.38
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.37
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.33
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.32
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.3
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.3
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.29
COG0517	117	FOG: CBS domain [General function prediction only]	99.29
PRK11573	413	hypothetical protein; Provisional	99.23
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.21
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.13
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.11
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.1
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.99
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.95
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.85
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.82
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.81
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.8
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.8
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.8
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.79
COG3620	187	Predicted transcriptional regulator with C-termina	98.78
COG2524	294	Predicted transcriptional regulator, contains C-te	98.77
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.73
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.72
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.69
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.69
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.65
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.64
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.64
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.63
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.62
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.61
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.61
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.6
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.58
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.58
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.58
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.57
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.55
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.55
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.55
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.55
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.54
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.54
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.53
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.52
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.52
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.51
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.51
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.5
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.49
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.49
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.49
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.48
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.48
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.47
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.47
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.46
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.46
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.46
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.46
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.46
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.45
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.43
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.42
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.41
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.41
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.4
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.4
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.38
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.38
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.37
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.36
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.35
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	98.35
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.35
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.34
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.34
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.34
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.33
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.32
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.31
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.28
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.26
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.26
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.24
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.24
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.24
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.24
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.21
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.19
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.18
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.17
COG0517	117	FOG: CBS domain [General function prediction only]	98.17
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.17
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.16
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.14
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.12
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.11
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.1
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.1
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.1
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	98.01
COG2905	610	Predicted signal-transduction protein containing c	98.01
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.9
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	97.86
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.71
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	97.6
PRK11573	413	hypothetical protein; Provisional	97.55
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.48
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.29
COG1253	429	TlyC Hemolysins and related proteins containing CB	97.21
COG4109	432	Predicted transcriptional regulator containing CBS	97.11
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	96.19
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	96.09
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	95.94
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	95.76
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	94.82
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	93.96
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	93.51
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	92.51
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	90.59
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	90.07
PF05198	76	IF3_N: Translation initiation factor IF-3, N-termi	88.71
PF14827	116	Cache_3: Sensory domain of two-component sensor ki	80.69
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	80.28

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.70  E-value=3.1e-17  Score=111.49  Aligned_cols=96  Identities=15%  Similarity=0.279  Sum_probs=81.5

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      +|.++++.+.||+|++  +++|++|..|+.....+.   -.+..++++|                +++++++.+|+.+.|
T Consensus       197 ~f~~~~i~GaPVvd~d--k~vGiit~~dI~~aia~g---~~~~kV~~~M----------------~k~vitI~eDe~i~d  255 (294)
T COG2524         197 LFYEKGIRGAPVVDDD--KIVGIITLSDIAKAIANG---NLDAKVSDYM----------------RKNVITINEDEDIYD  255 (294)
T ss_pred             HHHHcCccCCceecCC--ceEEEEEHHHHHHHHHcC---CccccHHHHh----------------ccCCceEcCchhHHH
Confidence            5788999999999865  799999999995432111   1234667755                679999999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      |+++|..+++.++.|+|.+|+++|+||++||++.++.
T Consensus       256 Air~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~  292 (294)
T COG2524         256 AIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG  292 (294)
T ss_pred             HHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence            9999999999999999999999999999999998764

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=1.2e-16  Score=98.73  Aligned_cols=101  Identities=24%  Similarity=0.326  Sum_probs=75.9

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++++.+||+|+++ +++|+++.+|+..............++.+++..          ...|..++.++.+++++.++
T Consensus        19 ~~~~~~~~~pVv~~~~-~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~v~~~~~l~~~   87 (120)
T cd04641          19 LVERRVSALPIVDENG-KVVDVYSRFDVINLAKEGAYNNLDLTVGEALER----------RSQDFEGVRTCSPDDCLRTI   87 (120)
T ss_pred             HHHcCCCeeeEECCCC-eEEEEEeHHHHHHHHhcCccccccCCHHHHHhh----------cccCCCCCeEEcCCCcHHHH
Confidence            5678899999999877 999999999997542211100011123332211          01344577899999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus        88 ~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          88 FDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             HHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            99999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=2.6e-16  Score=94.53  Aligned_cols=78  Identities=13%  Similarity=0.185  Sum_probs=68.3

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++++++||+|+++++++|++|..|+.....                                  +.++.+++++.+|
T Consensus        19 ~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~----------------------------------~~~v~~~~~l~~a   64 (98)
T cd04618          19 LVENGIRSAPLWDSRKQQFVGMLTITDFILILR----------------------------------LVSIHPERSLFDA   64 (98)
T ss_pred             HHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee----------------------------------eEEeCCCCcHHHH
Confidence            567889999999986339999999999963210                                  4789999999999


Q ss_pred             HHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIR  115 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~  115 (126)
                      +++|.+++.+++||+|++ |+++|+||.+|+++
T Consensus        65 ~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          65 ALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             HHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            999999999999999987 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.68  E-value=1.6e-16  Score=110.09  Aligned_cols=106  Identities=20%  Similarity=0.261  Sum_probs=85.1

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeecccccc-CcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRG-CHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      +.+|++.++||+|++. +++|+++.+|+.. .....+            ++++.... +....+|+.++.|+.++++..+
T Consensus       271 l~~H~ikaLPV~d~~~-rl~GiVt~~dl~~~a~~~p~------------qrlr~~~~-~~vk~imt~~v~tv~pdtpa~~  336 (382)
T COG3448         271 LQEHRIKALPVLDEHR-RLVGIVTQRDLLKHARPSPF------------QRLRFLRP-PTVKGIMTTPVVTVRPDTPAVE  336 (382)
T ss_pred             HHHcCccccccccccc-ceeeeeeHHHHhhccCcchH------------HHhhccCC-CcccccccCcceeecCCCcHHH
Confidence            5689999999999988 9999999999954 322111            11111111 1123488889999999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhh
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA  123 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~  123 (126)
                      ++-.+.+.+.|.+||+|++|+++||||.+|++.++++....
T Consensus       337 lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~~  377 (382)
T COG3448         337 LVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWSQ  377 (382)
T ss_pred             HHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999877653

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.67  E-value=2.6e-16  Score=96.07  Aligned_cols=92  Identities=16%  Similarity=0.166  Sum_probs=74.5

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+.+.+.+||+|+++ +++|+++..|+.....+.   +.+.++.+                .|..++.++.+++++.+|
T Consensus        19 ~~~~~~~~~~V~d~~~-~~~G~v~~~dl~~~~~~~---~~~~~v~~----------------~~~~~~~~v~~~~~l~~a   78 (111)
T cd04603          19 INELGARAVVVVDEEN-KVLGQVTLSDLLEIGPND---YETLKVCE----------------VYIVPVPIVYCDSKVTDL   78 (111)
T ss_pred             HHHcCCCEEEEEcCCC-CEEEEEEHHHHHhhcccc---ccccChhh----------------eeecCCcEECCCCcHHHH
Confidence            4567788999999877 999999999996542211   11223444                345577899999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +.+|.+++.+.+||+|++|+++|+||.+|+++
T Consensus        79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            99999999999999998899999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=2.7e-16  Score=96.39  Aligned_cols=96  Identities=16%  Similarity=0.232  Sum_probs=76.4

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      +|.+.+...+||+|+++ +++|+++.+|+..............++.+++                ..++.++.+++++.+
T Consensus        18 ~~~~~~~~~~~Vvd~~g-~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~----------------~~~~~~v~~~~~l~~   80 (114)
T cd04619          18 ILGEPGIDLVVVCDPHG-KLAGVLTKTDVVRQMGRCGGPGCTAPVENVM----------------TRAVVSCRPGDLLHD   80 (114)
T ss_pred             HHHhcCCCEEEEECCCC-CEEEEEehHHHHHHHhhcCCCcccCCHHHHh----------------cCCCeeECCCCCHHH
Confidence            46778899999999888 9999999999964321100011223455544                457889999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus        81 a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          81 VWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             HHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=3.9e-15  Score=92.73  Aligned_cols=108  Identities=36%  Similarity=0.616  Sum_probs=76.3

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++++.+||+|+++ +++|+++.+|++........ ....+...++ .+..  ........|..++.++.+++++.+|
T Consensus        19 ~~~~~~~~i~V~d~~~-~~~Giv~~~dl~~~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~v~~~~~l~~a   93 (126)
T cd04642          19 MRKNNISGLPVVDEKG-KLIGNISASDLKGLLLSPDD-LLLYRTITFK-ELSE--KFTDSDGVKSRPLITCTPSSTLKEV   93 (126)
T ss_pred             HHHhCCCcccEECCCC-cEEEEEEHHHhhhhhcCcch-hhcccchhhh-hhhh--hcccccccccCCCeEECCCCcHHHH
Confidence            4567899999999887 99999999999654221111 0011111111 0000  0001112455688999999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      +++|.+++.+.+||+|++++++|+||..|++++
T Consensus        94 ~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~~  126 (126)
T cd04642          94 ITKLVANKVHRVWVVDEEGKPIGVITLTDIISI  126 (126)
T ss_pred             HHHHHHhCCcEEEEECCCCCEEEEEEHHHHhcC
Confidence            999999999999999988999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=1e-14  Score=90.41  Aligned_cols=103  Identities=20%  Similarity=0.291  Sum_probs=73.5

Q ss_pred             cccCCCCceeeEeeCC-CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            3 WYKKPNVERNSISLGN-GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~-~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      .|.++++..+||+|++ + +++|+++..|+..........   .+..+......    .. ....|..++.++.+++++.
T Consensus        18 ~~~~~~~~~~~V~d~~~~-~~~Giv~~~dl~~~~~~~~~~---~~~~~~~~~~~----~~-~~~~~~~~~~~v~~~~~l~   88 (123)
T cd04627          18 ILGSGGIHRVAVTEEESG-EVIGILSQRRLVEFLWENARS---FPGLDPLYPIP----LR-DLTIGTSDVISINGDQPLI   88 (123)
T ss_pred             HHhhCCcceEEEEeCCCC-cEEEEEEHHHHHHHHHHhHHh---ccchhhhhhhh----hh-hcccCcCCceEeCCCCCHH
Confidence            4566788999999987 6 999999999996532221100   01111100000    00 0014556889999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHH
Q 039385           82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMI  114 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil  114 (126)
                      +|++.|.+++.+.+||+|++|+++|+||++|+-
T Consensus        89 ~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          89 DALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             HHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            999999999999999999889999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=5.5e-15  Score=90.41  Aligned_cols=95  Identities=18%  Similarity=0.180  Sum_probs=73.8

Q ss_pred             cccCCCCceeeEeeCC-CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            3 WYKKPNVERNSISLGN-GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~-~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      .|.+.+.+.+||+|++ + +++|+++.+|+..............++.+++                ..++.++.+++++.
T Consensus        18 ~~~~~~~~~~~V~~~~~~-~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~----------------~~~~~~v~~~~~l~   80 (114)
T cd04630          18 LMKEHGVSSLVVEKRRES-DAYGIVTMRDILKKVVAEGRDPDRVNVYEIM----------------TKPLISVSPDMDIK   80 (114)
T ss_pred             HHHHcCCCEEEEEECCCC-cEEEEEehHHHHHHHHhCCCCCCccCHHHHh----------------cCCCeeECCCCCHH
Confidence            3566788899999987 6 9999999999964211110011122455544                45788999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++++.|.+.+.+.+||+|+ |+++|+|++.|+++
T Consensus        81 ~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          81 YCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             HHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            9999999999999999996 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=7.3e-15  Score=87.75  Aligned_cols=78  Identities=21%  Similarity=0.340  Sum_probs=69.3

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      +|.+.+++.+||+|+++ +++|+++..|+....                                  .+.++.+++++.+
T Consensus        18 ~~~~~~~~~~~V~d~~~-~~~Giv~~~dl~~~~----------------------------------~~~~v~~~~~l~~   62 (96)
T cd04614          18 IMELANVKALPVLDDDG-KLSGIITERDLIAKS----------------------------------EVVTATKRTTVSE   62 (96)
T ss_pred             HHHHcCCCeEEEECCCC-CEEEEEEHHHHhcCC----------------------------------CcEEecCCCCHHH
Confidence            46778899999999887 999999999996431                                  1378999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++.+|.+++.+.+||++++|+++|+||++|+++
T Consensus        63 a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          63 CAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             HHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.58  E-value=1.4e-14  Score=87.81  Aligned_cols=89  Identities=18%  Similarity=0.287  Sum_probs=74.0

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      +|.+++.+.+||+|+++ +++|+++..|+.....       ..++.+++                ..++.++.+++++.+
T Consensus        19 ~~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~-------~~~v~~~~----------------~~~~~~v~~~~~l~~   74 (108)
T cd04596          19 LNKETGHSRFPVVDEKN-KVVGIVTSKDVAGKDP-------DTTIEKVM----------------TKNPITVNPKTSVAS   74 (108)
T ss_pred             HHHHcCCCceeEECCCC-eEEEEecHHHHhcccc-------cccHHHHh----------------cCCCeEECCCCCHHH
Confidence            35667788999999877 9999999999964321       12455544                447789999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++.|.+++.+.+||++++|+++|++|..|+++
T Consensus        75 ~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          75 VAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             HHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            999999999999999998899999999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=7.5e-15  Score=90.45  Aligned_cols=96  Identities=16%  Similarity=0.171  Sum_probs=73.5

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.++++..+||+|+++ +++|+++..|+....... ..+...++.++|..              ..++.++.+++++.++
T Consensus        19 ~~~~~~~~~~V~d~~~-~~~Givt~~dl~~~~~~~-~~~~~~~~~~~~~~--------------~~~~~~v~~~~~l~~~   82 (118)
T cd04617          19 LFLEDVGSLFVVDEDG-DLVGVVSRKDLLKASIGG-ADLQKVPVGVIMTR--------------MPNITTTTPEESVLEA   82 (118)
T ss_pred             HHHcCCCEEEEEcCCC-CEEEEEEHHHHHHHHHcC-CCccCCCHHHHhCC--------------CCCcEEECCCCcHHHH
Confidence            4567889999999887 999999999986432111 01112344554410              1267899999999999


Q ss_pred             HHHHHhcCCCEEEEEcCC---CceEEEEeHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQ---RLLLGLVSLTDMIR  115 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~---~~lvGivs~~dil~  115 (126)
                      +++|.+++.+.+||+|++   |+++|+||++|+++
T Consensus        83 ~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          83 AKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             HHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            999999999999999976   69999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.57  E-value=8.2e-15  Score=89.57  Aligned_cols=94  Identities=23%  Similarity=0.397  Sum_probs=72.6

Q ss_pred             ccCCC-CceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            4 YKKPN-VERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         4 ~~~~~-~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      |.+++ .+.+||+|+++ +++|+++.+|+.......   ....++.+++..              ..++.++.+++++.+
T Consensus        19 ~~~~~~~~~~~V~d~~~-~~~G~v~~~dl~~~~~~~---~~~~~v~~~~~~--------------~~~~~~v~~~~~l~~   80 (114)
T cd04801          19 YVLGSNQRRFVVVDNEG-RYVGIISLADLRAIPTSQ---WAQTTVIQVMTP--------------AAKLVTVLSEESLAE   80 (114)
T ss_pred             HhccCCceeEEEEcCCC-cEEEEEEHHHHHHHHHhh---ccccchhhhhcc--------------cccceEECCCCcHHH
Confidence            44454 88999999877 999999999996543221   112345555421              123568999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      |++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus        81 a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          81 VLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             HHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            999999999999999998899999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.56  E-value=1.3e-14  Score=88.78  Aligned_cols=95  Identities=20%  Similarity=0.255  Sum_probs=74.8

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      +|.+.+++.+||+|+++ +++|+++.+|+.....+.. .....++.++                |..++.++.+++++.+
T Consensus        18 ~~~~~~~~~~~V~d~~~-~~~G~v~~~dl~~~~~~~~-~~~~~~~~~~----------------~~~~~~~v~~~~~l~~   79 (115)
T cd04593          18 QLIESKHGSALVVDRDG-GVVGIITLPDLLRALEADE-AGEPSAVDEV----------------ATPPLLTVHPDEPLAH   79 (115)
T ss_pred             HHHhCCCcEEEEEcCCC-CEEEEEEHHHHHHHHhccc-ccccccHHHh----------------ccCCceEECCCCCHHH
Confidence            45677889999999887 9999999999965322210 0011123443                3457889999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCC--CceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQ--RLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~--~~lvGivs~~dil~  115 (126)
                      ++++|.+++...+||+|++  |+++|+||.+|+++
T Consensus        80 ~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          80 ALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             HHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            9999999999999999977  79999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.56  E-value=1.2e-14  Score=89.97  Aligned_cols=105  Identities=21%  Similarity=0.269  Sum_probs=74.5

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      +|.+.+++.+||+|+++ +++|+++..|+..........    ....+.+.  ...... ...+|..++.++.+++++.+
T Consensus        19 ~~~~~~~~~~~V~~~~~-~~~Giv~~~~l~~~~~~~~~~----~~~~~~~~--~~~~~~-i~~~~~~~~~~~~~~~~l~~   90 (124)
T cd04600          19 LLRRHRIKALPVVDGDR-RLVGIVTQRDLLRHARPDGRR----PLRGRLRG--RDKPET-VGDIMSPPVVTVRPDTPIAE   90 (124)
T ss_pred             HHHHcCCceeeEECCCC-CEEEEEEHHHHHhhhcccccc----hhhhhhhc--cccccc-HHHhccCCCeeeCCCCcHHH
Confidence            35667888999999877 999999999995432111000    00000000  000000 01245668899999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++.|.+++.+.+||+|++|+++|+||+.|+++
T Consensus        91 ~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          91 LVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             HHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            999999999999999998899999999999975

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=1.5e-14  Score=87.88  Aligned_cols=95  Identities=23%  Similarity=0.315  Sum_probs=73.9

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      +|.+++++.+||+|+++ +++|+++.+|+..............++.++                |..++.++.++.++.+
T Consensus        18 ~~~~~~~~~~~V~~~~~-~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~----------------~~~~~~~v~~~~~~~~   80 (113)
T cd04623          18 LMAEKNIGAVVVVDDGG-RLVGIFSERDIVRKVALRGASALDTPVSEI----------------MTRNVITVTPDDTVDE   80 (113)
T ss_pred             HHHHcCCCeEEEECCCC-CEEEEEehHHHHHHHhhcCCCccccCHHHh----------------cCCCcEEECCCCcHHH
Confidence            35667889999999877 999999999996432211101112234443                3457889999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++.|.+.+.+.+||+++ |+++|+||..|+++
T Consensus        81 ~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          81 AMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             HHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence            999999999999999996 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.55  E-value=2.2e-14  Score=87.51  Aligned_cols=94  Identities=23%  Similarity=0.337  Sum_probs=74.1

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      +|.+.+...+||+|+++ +++|+++.+|+........  ....++.+++                ..++.++.+++++.+
T Consensus        19 ~~~~~~~~~~~v~d~~~-~~~G~v~~~dl~~~~~~~~--~~~~~v~~~~----------------~~~~~~v~~~~~l~~   79 (113)
T cd04607          19 KIDKNALRIVLVVDENG-RLLGTVTDGDIRRALLKGL--SLDDPVSEVM----------------NRNPITAKVGSSREE   79 (113)
T ss_pred             HHHhcCcCEEEEECCCC-CEEEEEEcHHHHHHHhcCC--CcCCCHHHhh----------------cCCCEEEcCCCCHHH
Confidence            35567888999999877 9999999999853211110  0122455544                446788999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++.|.+++.+.+||+|++|+++|+||.+|++.
T Consensus        80 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          80 ILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             HHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence            999999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.54  E-value=4.3e-15  Score=92.65  Aligned_cols=96  Identities=9%  Similarity=0.107  Sum_probs=74.4

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++++.+||+|+++ +++|+++..|+.....+... ....++.++|                .+++.++.+++++.++
T Consensus        20 m~~~~~~~~~Vvd~~~-~~~Gii~~~dl~~~~~~~~~-~~~~~v~~im----------------~~~~~~v~~~~~~~~v   81 (124)
T cd04608          20 LKEKGFDQLPVVDESG-KILGMVTLGNLLSSLSSGKV-QPSDPVSKAL----------------YKQFKRVNKNDTLGKL   81 (124)
T ss_pred             HHHcCCCEEEEEcCCC-CEEEEEEHHHHHHHHHHhcc-CCCCcHHHHh----------------hccceecCCCCCHHHH
Confidence            5667889999999887 99999999999643222110 1234666755                4588999999999999


Q ss_pred             HHHHH---------hcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           84 IGKAL---------TKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        84 ~~~m~---------~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      .+++.         +.+.+.+||++++|+++|+||..|+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          82 SRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             HhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence            99653         34678889999889999999999999763

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=5.2e-14  Score=85.72  Aligned_cols=94  Identities=14%  Similarity=0.196  Sum_probs=74.4

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      +.+++.+.+||+|+++ +++|+++..|+.....+. ..+...++.+++                ..++.++.+++++.++
T Consensus        19 ~~~~~~~~~~vvd~~~-~~~G~v~~~dl~~~~~~~-~~~~~~~i~~~~----------------~~~~~~v~~~~~l~~~   80 (113)
T cd04615          19 MYTSGSRALPVVDDKK-RLVGIITRYDVLSYALES-EELKDAKVREVM----------------NSPVITIDANDSIAKA   80 (113)
T ss_pred             HHHcCCceEeEEcCCC-CEEEEEEHHHHHHhhhhh-hhhcCCcHHHhc----------------cCCceEECCCCcHHHH
Confidence            4567788999999877 999999999996432111 111223455543                4578899999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus        81 ~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          81 RWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             HHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            99999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.54  E-value=5e-14  Score=84.86  Aligned_cols=88  Identities=13%  Similarity=0.163  Sum_probs=72.1

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+.+...+||+|+++ +++|+++..|+.....        .++.++                |.+.+.++.+++++.+
T Consensus        18 ~~~~~~~~~~~v~d~~g-~~~Giv~~~dl~~~~~--------~~~~~~----------------~~~~~~~~~~~~~~~~   72 (106)
T cd04582          18 LMDDSDLRALTVVDADG-QPLGFVTRREAARASG--------GCCGDH----------------AEPFKVTVSVDDDLRI   72 (106)
T ss_pred             HHHhcCCCEEEEECCCC-CEEEEEeHHHHHHhcc--------cchhhh----------------cccCCEEECCCCCHHH
Confidence            35667788999999877 9999999999964311        123333                3446678999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++.|.+++...+||+|++|+++|+||+++++.
T Consensus        73 ~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          73 VLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             HHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            999999999999999998899999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.54  E-value=6.6e-14  Score=84.95  Aligned_cols=84  Identities=21%  Similarity=0.278  Sum_probs=69.7

Q ss_pred             CceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHHHHH
Q 039385            9 VERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKAL   88 (126)
Q Consensus         9 ~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~~m~   88 (126)
                      +..+||+|+++ +++|+++.+|+....       ...++.+++                ..++.++.+++++.++++.|.
T Consensus        25 ~~~~~vvd~~~-~~~G~v~~~~l~~~~-------~~~~v~~~~----------------~~~~~~i~~~~~~~~~~~~~~   80 (109)
T cd04606          25 IYYIYVVDEEG-RLLGVVSLRDLLLAD-------PDTPVSDIM----------------DTDVISVSADDDQEEVARLFE   80 (109)
T ss_pred             eeEEEEECCCC-CEEEEEEHHHHhcCC-------CcchHHHHh----------------CCCCeEEcCCCCHHHHHHHHH
Confidence            47899999877 999999999986431       112444443                446789999999999999999


Q ss_pred             hcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           89 TKHVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        89 ~~~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      +++.+.+||+|++++++|+||..|+++.
T Consensus        81 ~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          81 KYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             HcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            9999999999988999999999999875

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=2.3e-14  Score=87.63  Aligned_cols=94  Identities=14%  Similarity=0.243  Sum_probs=71.4

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHH-HHhh---hhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCC
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAV-LQTW---LPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDS   78 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~   78 (126)
                      +|.+.+++.+||+|+++ +++|+++.+|+....... ..++   ...++.+                .|..++.++.+++
T Consensus        18 ~~~~~~~~~~~V~d~~~-~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~----------------~~~~~~~~v~~~~   80 (116)
T cd04643          18 VLTKHGYSAIPVLDKEG-KYVGTISLTDILWKLKGLENLDLERLVDLKVID----------------VMNTDVPVIIDDA   80 (116)
T ss_pred             HHHHCCCceeeeECCCC-cEEEEEeHHHHHHHhhccCchhHHHHhCCcHHH----------------HhcCCCceecCCC
Confidence            45678899999999877 999999999995432111 0000   0123333                3455788999999


Q ss_pred             CHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           79 PLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        79 ~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++.+++..|.+.+  .+||+|++|+++|++|..|+++
T Consensus        81 ~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          81 DIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             CHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            9999999998764  5999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=3.2e-14  Score=87.75  Aligned_cols=95  Identities=21%  Similarity=0.376  Sum_probs=73.9

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHh--------hhhhcHHHHHHHHhcCCCCCCCccccccceEEEe
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQT--------WLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQ   75 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~   75 (126)
                      |.+.+++.+||+|+++ +++|+++..|+..........        ....++.+                +|..++.++.
T Consensus        19 ~~~~~~~~~~V~~~~~-~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----------------~~~~~~~~v~   81 (122)
T cd04803          19 MREHRIRHLPVVNEDG-KLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE----------------VMKTDVLTVT   81 (122)
T ss_pred             HHHcCcccccEECCCC-CEEEEEEHHHHHHHhccccccccccccccccCcCHHH----------------hhCCCCeEeC
Confidence            4567889999999877 999999999996432111100        01123333                3455788999


Q ss_pred             CCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           76 VDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        76 ~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++++.++++.|.+.+.+.+||++++|+++|++|..|+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          82 PDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            9999999999999999999999998799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=2.3e-14  Score=87.32  Aligned_cols=95  Identities=23%  Similarity=0.238  Sum_probs=73.6

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccC-cHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGC-HYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      +|.+.+.+.+||+|+++ +++|+++..|+... ...........++.+++                ..++.++.+++++.
T Consensus        18 ~~~~~~~~~~~V~~~~~-~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~----------------~~~~~~v~~~~~l~   80 (114)
T cd04629          18 KLLKSKISGGPVVDDNG-NLVGFLSEQDCLKQLLESSYHCDGVATVRDIM----------------TTEVLTVSPDDSIV   80 (114)
T ss_pred             HHHhcCCCCccEECCCC-eEEEEeehHHHHHHhhhhhhccCCCccHHHHh----------------ccCceEECCCCcHH
Confidence            34567788999999887 99999999999543 21111111122444543                44778899999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++++.|.+++...+||+|+ |+++|+||.+|+++
T Consensus        81 ~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          81 DLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             HHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence            9999999999999999996 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.53  E-value=4.1e-14  Score=85.93  Aligned_cols=91  Identities=22%  Similarity=0.274  Sum_probs=72.2

Q ss_pred             ccCCCCceeeEeeCC-CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            4 YKKPNVERNSISLGN-GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~-~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      |.+.+.+.+||++++ + +++|+++..|+........   ...++..+                + .++.++.+++++.+
T Consensus        19 ~~~~~~~~~~v~~~~~~-~~~G~v~~~~l~~~~~~~~---~~~~~~~~----------------~-~~~~~v~~~~~l~~   77 (111)
T cd04590          19 IAESGHSRFPVYDGDLD-NIIGVVHVKDLLRALAEGE---EDLDLRDL----------------L-RPPLFVPESTPLDD   77 (111)
T ss_pred             HhhCCCceEEEECCCCc-eEEEEEEHHHHHHHHHcCC---CcCCHHHH----------------h-cCCeecCCCCcHHH
Confidence            566788999999987 6 9999999999965422111   01123332                2 35688999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus        78 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          78 LLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             HHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            999999999999999998899999999999875

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.53  E-value=5.6e-14  Score=104.99  Aligned_cols=93  Identities=18%  Similarity=0.184  Sum_probs=78.8

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++++.+||+|+++ +++|+++.+|+.....       ..++.++                |+.++.++++++++.+|
T Consensus       115 m~~~~~s~l~VVD~~g-klvGIVT~rDL~~~~~-------~~~V~di----------------Mt~~~itV~~d~sL~eA  170 (479)
T PRK07807        115 LPKRAHGAVVVVDEEG-RPVGVVTEADCAGVDR-------FTQVRDV----------------MSTDLVTLPAGTDPREA  170 (479)
T ss_pred             HHhcCCceEEEECCCC-eEEEEEeHHHHhcCcc-------CCCHHHh----------------ccCCceEECCCCcHHHH
Confidence            5678899999999877 9999999999965421       1245554                45688999999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      +..|.+++++.+||+|++++++|+||++||++.....
T Consensus       171 l~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~  207 (479)
T PRK07807        171 FDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT  207 (479)
T ss_pred             HHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence            9999999999999999889999999999999976543

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.53  E-value=6.1e-14  Score=85.02  Aligned_cols=91  Identities=18%  Similarity=0.299  Sum_probs=73.7

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      +|.+++++.+||+|+++ +++|+++..|+........     .++.+                .|..++.++.+++++.+
T Consensus        19 ~~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~~~~-----~~~~~----------------~~~~~~~~v~~~~~l~~   76 (110)
T cd04605          19 LMIEENINHLPVVDEDG-RLVGIVTSWDISKAVARDK-----KSVED----------------IMTRNVITATPDEPIDV   76 (110)
T ss_pred             HHHhCCCceEEEECCCC-cEEEEEeHHHHHHHHhhCc-----cCHHH----------------hcCCCCeEECCCCcHHH
Confidence            45677889999999887 9999999999954321111     12333                33457889999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++.|.+++.+.+||++++|+++|+||+.|+++
T Consensus        77 ~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          77 AARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             HHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            999999999999999998899999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=6.3e-14  Score=86.76  Aligned_cols=95  Identities=20%  Similarity=0.276  Sum_probs=73.3

Q ss_pred             ccCCCCceeeEeeCC-CceeEEEeeccccccCcHHHHH-h---------hhhhcHHHHHHHHhcCCCCCCCccccccceE
Q 039385            4 YKKPNVERNSISLGN-GWRLIGTFSASDLRGCHYAVLQ-T---------WLPLTALEFTQQVLTSPLFSESNTTQQRELL   72 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~-~~~l~G~is~~dl~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~   72 (126)
                      |.+++.+.+||+|++ + +++|+++..|+.....+... .         ....++.+                .|..++.
T Consensus        19 ~~~~~~~~i~V~d~~~~-~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~   81 (125)
T cd04631          19 MVRNGFRRLPVVDEGTG-KLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS----------------IMTRNVI   81 (125)
T ss_pred             HHHcCcccceeEeCCCC-EEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH----------------HhcCCce
Confidence            556788899999987 6 99999999999643211100 0         00112233                3455789


Q ss_pred             EEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           73 TCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        73 ~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++.+++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus        82 ~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          82 TITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             EeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            9999999999999999999999999997799999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=8e-14  Score=86.84  Aligned_cols=96  Identities=17%  Similarity=0.304  Sum_probs=73.3

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHH-HH-----------hhhhhcHHHHHHHHhcCCCCCCCccccccc
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAV-LQ-----------TWLPLTALEFTQQVLTSPLFSESNTTQQRE   70 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~   70 (126)
                      +|.+.+++.+||+|+++ +++|++|.+|+....... ..           .....++.+                .|..+
T Consensus        18 ~~~~~~~~~~~Vv~~~~-~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~   80 (128)
T cd04632          18 VLREHGISRLPVVDDNG-KLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD----------------AMSSP   80 (128)
T ss_pred             HHHHcCCCEEEEECCCC-cEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH----------------HhcCC
Confidence            46678899999999887 999999999996431111 00           001112222                45568


Q ss_pred             eEEEeCCCCHHHHHHHHHhcCCCEEEEEc--CCCceEEEEeHHHHHH
Q 039385           71 LLTCQVDSPLSEVIGKALTKHVHRVWVVD--QQRLLLGLVSLTDMIR  115 (126)
Q Consensus        71 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~~~~lvGivs~~dil~  115 (126)
                      ++++.++.++.+++..|.+++.+.+||++  ++|+++|+||++|+++
T Consensus        81 ~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          81 VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            89999999999999999999999999994  4689999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=5.4e-14  Score=88.90  Aligned_cols=109  Identities=17%  Similarity=0.253  Sum_probs=74.0

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHH-HHhhhhhcHHHHHHH-------HhcCCCCCCCccccccceEEE
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAV-LQTWLPLTALEFTQQ-------VLTSPLFSESNTTQQRELLTC   74 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~m~~~~~~v   74 (126)
                      +|.+.+.+.+||+|+++ +++|+++..|+....... ...+.. ....+.+.       .......+ ..+.|..++.++
T Consensus        18 ~~~~~~~~~l~V~d~~~-~~~Giv~~~dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~v   94 (135)
T cd04621          18 EMEKNGVGRVIVVDDNG-KPVGVITYRDLAFAEFEDNERGLPK-KSIKMKRKAGQKRYRYVKEVPLV-AEDIMTEEIITV   94 (135)
T ss_pred             HHHHcCCCcceEECCCC-CEEEEEeHHHHHHHhhcccccccch-hhhhhhhhccccccccccccccc-HHHhcCCCCeEE
Confidence            46677889999999877 999999999995432111 000000 00000000       00000000 112556688899


Q ss_pred             eCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           75 QVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        75 ~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      .+++++.+++..|.+++.+.+||+++ |+++|+||.+|+++
T Consensus        95 ~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          95 SPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            99999999999999999999999996 99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.52  E-value=5.5e-14  Score=100.79  Aligned_cols=94  Identities=18%  Similarity=0.251  Sum_probs=74.4

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++.+.+||+|+++ +++|++|.+|++...... ..+...++.+                +|++++.++.+++++.+|
T Consensus       230 ~~~~~~~~~vVvd~~g-~lvGivt~~Dl~~~~~~~-~~~~~~~v~~----------------im~~~~~~v~~~~~l~~a  291 (326)
T PRK10892        230 ITRKNLGMTVICDDNM-KIEGIFTDGDLRRVFDMG-IDLRQASIAD----------------VMTPGGIRVRPGILAVDA  291 (326)
T ss_pred             HHhcCCCeEEEEcCCC-cEEEEEecHHHHHHHhcC-CCcccCCHHH----------------hcCCCCEEECCCCCHHHH
Confidence            4566778888888887 999999999996432111 0112234555                456688999999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      +++|.+++++.+||++ +++++|+||++|++++
T Consensus       292 ~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        292 LNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             HHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence            9999999999999998 6899999999999874

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.52  E-value=7.5e-14  Score=98.94  Aligned_cols=90  Identities=17%  Similarity=0.273  Sum_probs=78.4

Q ss_pred             cCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHH
Q 039385            5 KKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVI   84 (126)
Q Consensus         5 ~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~   84 (126)
                      .+.+.+.+||+|+.. +++|++|.+|+....+..       ++..                +|+++++++.+.+++..+.
T Consensus       217 ~kt~~sRfPVvn~~~-kvvGvVt~rDv~~~~~~t-------~ieK----------------VMtknp~tv~~~tsVAsva  272 (432)
T COG4109         217 EKTGHSRFPVVNRSM-KVVGVVTMRDVLDKKPST-------TIEK----------------VMTKNPITVRAKTSVASVA  272 (432)
T ss_pred             HHcCCCccceecccc-eEEEEEEehhhhcCCCCc-------cHHH----------------HhccCCeeecccchHHHHH
Confidence            457899999999988 999999999996553222       3333                5677999999999999999


Q ss_pred             HHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           85 GKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        85 ~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      .+|.-.++..+||+|++++++|+||++|+++.+-
T Consensus       273 q~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         273 QMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             HHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence            9999999999999999999999999999999874

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.51  E-value=1.2e-13  Score=83.61  Aligned_cols=89  Identities=22%  Similarity=0.299  Sum_probs=71.3

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeC-CCCHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQV-DSPLSE   82 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~-~~~l~~   82 (126)
                      |.+++.+.+||+|+++ +++|+++.+++.....      .+.++.+++                ..++..+.+ ++++.+
T Consensus        20 ~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~------~~~~v~~~~----------------~~~~~~~~~~~~~l~~   76 (110)
T cd04601          20 MAEYGISGLPVVDDDG-KLVGIVTNRDLRFETD------LDKPVSEVM----------------TPENLLTTVEGTSLEE   76 (110)
T ss_pred             HHHcCCceEEEEcCCC-EEEEEEEhhHeeeccc------CCCCHHHhc----------------ccCceEEecCCCCHHH
Confidence            4567889999999887 9999999999854321      122455544                334455666 999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++++|.+.+.+.+||+|++|+++|+||++|+++
T Consensus        77 ~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          77 ALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             HHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            999999999999999998899999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=7.3e-14  Score=84.87  Aligned_cols=92  Identities=17%  Similarity=0.275  Sum_probs=73.2

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+.+++.+||+|+++ +++|+++.+|+........  +...++.+++                ..++.++.+++++.++
T Consensus        19 ~~~~~~~~~~v~d~~~-~~~G~v~~~dl~~~~~~~~--~~~~~v~~~~----------------~~~~~~v~~~~~l~~~   79 (111)
T cd04626          19 MLKYNTNEIIVKDNEE-KLKGVVTFTDILDLDLFES--FLEKKVFNIV----------------SQDVFYVNEEDTIDEA   79 (111)
T ss_pred             HHHhCCCeEEEEcCCC-CEEEEEehHHhHHHHhhcc--cccCcHHHHh----------------cCCcEEEcCCCcHHHH
Confidence            4567789999999877 9999999999965422210  1122444443                4578899999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +..|.+++...+||+++ |+++|+||+.|++.
T Consensus        80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          80 LDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            99999999999999996 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=1.3e-13  Score=85.06  Aligned_cols=95  Identities=18%  Similarity=0.246  Sum_probs=73.3

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcH-----HHHH---hhhhhcHHHHHHHHhcCCCCCCCccccccceEEEe
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHY-----AVLQ---TWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQ   75 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~   75 (126)
                      |.+++++.+||+|+++ +++|+++..|+.....     +...   .....++.+                +|..++.++.
T Consensus        19 ~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~v~   81 (122)
T cd04635          19 MLESGFTGLPVVQKAG-ELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEK----------------IMSTPVYSVT   81 (122)
T ss_pred             HHHcCCCcccEECCCC-cEEEEEEcHHHHhhccccccccchhhhhhhccCcHHH----------------HhcCCCeeEC
Confidence            4567889999999877 9999999999964310     0000   001112333                3455789999


Q ss_pred             CCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           76 VDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        76 ~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++++.+++..|.+.+.+.+||+|++|+++|++|+.|+++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            9999999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.51  E-value=6.7e-14  Score=84.55  Aligned_cols=90  Identities=21%  Similarity=0.331  Sum_probs=73.3

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.++++..+||+|+++ +++|+++..|+......      ..++.+++                ...+.++.+++++.+
T Consensus        19 ~~~~~~~~~~~v~d~~~-~~~G~v~~~dl~~~~~~------~~~v~~~~----------------~~~~~~v~~~~~~~~   75 (109)
T cd04583          19 LMRDKKVDSLLVVDKDN-KLLGIVSLESLEQAYKE------AKSLEDIM----------------LEDVFTVQPDASLRD   75 (109)
T ss_pred             HHHHCCCceEEEEcCCC-cEEEEEEHHHHHHHhhc------CCcHhHhh----------------cCCceEECCCCcHHH
Confidence            35667889999999877 99999999999643211      11344433                457788999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++..|.+.+...+||++++|+++|++|..|+++
T Consensus        76 ~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          76 VLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             HHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            999999999999999998899999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.51  E-value=1.4e-13  Score=103.32  Aligned_cols=94  Identities=19%  Similarity=0.210  Sum_probs=77.2

Q ss_pred             ccCCCCceeeEeeC---CCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCH
Q 039385            4 YKKPNVERNSISLG---NGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPL   80 (126)
Q Consensus         4 ~~~~~~~~~pVvd~---~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l   80 (126)
                      |.+++++.+||+|+   ++ +++|+||.+|++...     .....++.++|..              .++++++.+++++
T Consensus       123 m~~~~~~~vpVVD~~~~~g-kLvGIVT~~DLr~~~-----~~~~~~V~dIMt~--------------~~~~itv~~d~~l  182 (502)
T PRK07107        123 KEKTGHSTVAVTEDGTAHG-KLLGIVTSRDYRISR-----MSLDTKVKDFMTP--------------FEKLVTANEGTTL  182 (502)
T ss_pred             HHhcCCCeEEEEeCCCcCC-EEEEEEEcHHhhccc-----cCCCCCHHHHhCC--------------CCCeEEECCCCcH
Confidence            46778899999997   45 999999999996321     1133467776521              1378899999999


Q ss_pred             HHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           81 SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        81 ~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      .+|+++|.++++..+||+|++++++|+||+.|+++..
T Consensus       183 ~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        183 KEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             HHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence            9999999999999999999889999999999999864

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=5.2e-14  Score=87.65  Aligned_cols=95  Identities=19%  Similarity=0.225  Sum_probs=70.5

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHH-HH----HhhhhhcHHHHHHHHhcCCCCCCCccccccceE--EE--
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYA-VL----QTWLPLTALEFTQQVLTSPLFSESNTTQQRELL--TC--   74 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~--~v--   74 (126)
                      |.+++...+||+|+++ +++|+++..|+...... ..    ..+...++.++|                .+++.  .+  
T Consensus        19 ~~~~~~~~~~V~d~~~-~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im----------------~~~~~~~~~~~   81 (126)
T cd04640          19 MIKHGVRLLLVVDSDD-NFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVM----------------TPKEDLKALDL   81 (126)
T ss_pred             HHHcCCcEEEEEcCCC-cEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhc----------------CchhhhccccH
Confidence            4567888999999887 99999999999742110 00    011233455554                33332  33  


Q ss_pred             --eCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHH
Q 039385           75 --QVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIR  115 (126)
Q Consensus        75 --~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~  115 (126)
                        .+++++.+++++|.+++.+.+||+|++ |+++|+||++|+++
T Consensus        82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence              368899999999999999999999986 79999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.51  E-value=4e-14  Score=89.12  Aligned_cols=110  Identities=27%  Similarity=0.328  Sum_probs=73.5

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHH----Hhhhhhc--HHHHHHHHhcCCCCCCCccccccceEEEeC
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVL----QTWLPLT--ALEFTQQVLTSPLFSESNTTQQRELLTCQV   76 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~   76 (126)
                      .|.++++..+||+|+++ +++|+++..|+........    ..+....  ...+........... ...+|..++.++.+
T Consensus        19 ~~~~~~~~~~~Vvd~~~-~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~v~~   96 (135)
T cd04586          19 LMLDNHISGLPVVDDDG-RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK-VADVMTRPVVTVGE   96 (135)
T ss_pred             HHHHcCCCCceEECCCC-CEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC-HHHHhCCCceEeCC
Confidence            35677888999999877 9999999999954311000    0000000  000000000000001 11245567899999


Q ss_pred             CCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           77 DSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        77 ~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++++.+++..|.+.+.+.+||+| +|+++|+||+.|+++
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          97 DTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            99999999999999999999999 899999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.50  E-value=9.9e-14  Score=84.44  Aligned_cols=94  Identities=22%  Similarity=0.336  Sum_probs=74.1

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+.+.+.+||+|+++ +++|+++..++..+..... .....++.+++                ..++.++.+++++.++
T Consensus        20 ~~~~~~~~~~v~d~~~-~~~G~v~~~~i~~~~~~~~-~~~~~~v~~~~----------------~~~~~~v~~~~~~~~~   81 (114)
T cd04604          20 MSRKGLGMTAVVDEDG-RLVGIFTDGDLRRALEKGL-DILTLPVADVM----------------TRNPKTIDPDALAAEA   81 (114)
T ss_pred             HHhcCccEEEEEcCCC-CEEEEechHHHHHHHhccC-ccccCCHHHhh----------------ccCCeEECCCCcHHHH
Confidence            3456788999999887 9999999999865422211 01112455544                4467889999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++|.+++.+.+||++++++++|+|+..||++
T Consensus        82 ~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          82 LELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             HHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            99999999999999998899999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=1.1e-13  Score=84.05  Aligned_cols=92  Identities=21%  Similarity=0.199  Sum_probs=73.1

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+.+...+||+|+++ +++|+++..|+.......   ....++.++                |..++.++.+++++.++
T Consensus        19 ~~~~~~~~~~V~~~~~-~~~G~v~~~~l~~~~~~~---~~~~~v~~~----------------~~~~~~~i~~~~~~~~~   78 (111)
T cd04639          19 LLATTQHEFPVVDGDG-HLVGLLTRDDLIRALAEG---GPDAPVRGV----------------MRRDFPTVSPSATLDAV   78 (111)
T ss_pred             HHHcCCCcceEECCCC-cEEEEeeHHHHHHHHHhc---CCCCcHHHH----------------hcCCCcEECCCCcHHHH
Confidence            4567789999999877 999999999996432111   011234443                34577899999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++.|.+++...+||++++|+++|++|.+|+.+
T Consensus        79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999998799999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.50  E-value=1.2e-13  Score=100.70  Aligned_cols=109  Identities=28%  Similarity=0.430  Sum_probs=83.9

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhc-HHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLT-ALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      -|...+++++||+|..+ +.+|+++..|++.+..+......... +......   ..       .-..++++|.++.++.
T Consensus       254 ~m~~~~is~lpvV~~~g-~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~---~~-------~~~~~vvtc~~~ssL~  322 (381)
T KOG1764|consen  254 IMSERRISALPVVDENG-KKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSH---RP-------IRFEGVVTCRPTSTLA  322 (381)
T ss_pred             HHHhcCcCcceEEcCCC-ceecceehhhhhhhhhcCccCccchhHHHHHhhh---cc-------cccCccEEEeecchHH
Confidence            36789999999999999 77999999999877433221112222 2232221   11       1123579999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385           82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~  122 (126)
                      +++.+|..+++|+++|+|++|.++|+||.+|++..+.....
T Consensus       323 ~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p~  363 (381)
T KOG1764|consen  323 EVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTPS  363 (381)
T ss_pred             HHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCcc
Confidence            99999999999999999999999999999999999877654

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.50  E-value=8.5e-14  Score=99.56  Aligned_cols=94  Identities=19%  Similarity=0.191  Sum_probs=75.3

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++...+||+|+++ +++|+++.+|+........  ....++.+                +|++++.++.+++++.+|
T Consensus       225 ~~~~~~~~~~Vvd~~g-~~iG~vt~~dl~~~~~~~~--~~~~~v~~----------------im~~~~~~v~~~~~l~~a  285 (321)
T PRK11543        225 LSRTGLGLVAVCDAQQ-QVQGVFTDGDLRRWLVGGG--ALTTPVNE----------------AMTRGGTTLQAQSRAIDA  285 (321)
T ss_pred             HHHcCCCEEEEEcCCC-cEEEEecHHHHHHHHhCCC--CcCCcHHH----------------hcCCCCEEECCCCCHHHH
Confidence            4567788999999888 9999999999864211110  01223444                456688999999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      ++.|.+++...+||+|++|+++|+||+.|++++
T Consensus       286 ~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        286 KEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             HHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            999999999999999988999999999999864

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.49  E-value=2.1e-13  Score=73.82  Aligned_cols=53  Identities=25%  Similarity=0.369  Sum_probs=50.6

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      +|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++++.
T Consensus         4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            67789999999999999999999999999999999999999999999999875

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.49  E-value=1.4e-13  Score=83.45  Aligned_cols=92  Identities=23%  Similarity=0.278  Sum_probs=72.8

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++...+||+|+ + +++|+++.+|+.........  ...++.++                |..++.++.+++++.++
T Consensus        19 ~~~~~~~~~~V~~~-~-~~~G~v~~~~l~~~~~~~~~--~~~~v~~~----------------~~~~~~~~~~~~~l~~~   78 (111)
T cd04611          19 MRERRISSIVVVDD-G-RPLGIVTERDILRLLASGPD--LQTPVGEV----------------MSSPLLTVPADTSLYDA   78 (111)
T ss_pred             HHHcCCCEEEEeeC-C-EEEEEEeHHHHHHHHhcCCC--CCcCHHHh----------------cCCCceEECCCCCHHHH
Confidence            55667889999987 6 99999999999644221110  12244443                34578889999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++.|.+.+...+||+|++|+++|+|+++|+++
T Consensus        79 l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          79 RQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             HHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            99999999999999998899999999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.49  E-value=1.6e-13  Score=83.89  Aligned_cols=90  Identities=14%  Similarity=0.138  Sum_probs=70.7

Q ss_pred             cccCCCCceeeEeeC---CCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeC--C
Q 039385            3 WYKKPNVERNSISLG---NGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQV--D   77 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~---~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~--~   77 (126)
                      +|.+.+++.+||+|+   ++ +++|+++..|+.....      ...++.+++                ..++.++..  +
T Consensus        19 ~~~~~~~~~~~V~d~~~~~~-~~~G~v~~~dl~~~~~------~~~~v~~~~----------------~~~~~~~~~~~~   75 (114)
T cd04602          19 IKEKKGFSGIPVTEDGKSGG-KLLGIVTSRDIDFLTD------SETPLSEVM----------------TPREVLVVAPTG   75 (114)
T ss_pred             HHHHcCCCceEEeeCCCcCC-EEEEEEEhHHhhhhhc------cCCCHHHhc----------------CCCceEEECCCC
Confidence            355678889999997   56 9999999999853211      012344443                445566655  9


Q ss_pred             CCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           78 SPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        78 ~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++.++++.|.+++...+||++++|+++|+||++|+++
T Consensus        76 ~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          76 ITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            99999999999999999999998899999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.49  E-value=1.6e-13  Score=83.18  Aligned_cols=91  Identities=25%  Similarity=0.357  Sum_probs=73.1

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      +|.+.+.+.+||+|+ + +++|+++..|+.......   +...++.+++                ..++.++.+++++.+
T Consensus        19 ~~~~~~~~~~~V~d~-~-~~~G~v~~~dl~~~~~~~---~~~~~~~~~~----------------~~~~~~v~~~~~l~~   77 (110)
T cd04595          19 LLLRYGHTALPVVEG-G-RVVGIISRRDVEKALRHG---LGHAPVKDYM----------------STDVVTVPPDTPLSE   77 (110)
T ss_pred             HHHHcCCCeeeEeeC-C-EEEEEEEHHHHHHHHhcc---cccCcHHHHh----------------cCCCEEECCCCcHHH
Confidence            355677889999998 6 999999999986432111   1233555544                457889999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++..|.+++.+.+||++ +|+++|+||+.|+++
T Consensus        78 ~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          78 VQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             HHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            99999999999999999 899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=1.4e-13  Score=83.60  Aligned_cols=93  Identities=25%  Similarity=0.327  Sum_probs=73.5

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+.+++.+||+|+++ +++|+++..|+........  ....++.+                +|..++.++.+++++.++
T Consensus        19 ~~~~~~~~~~v~d~~~-~~~G~v~~~~l~~~~~~~~--~~~~~v~~----------------~~~~~~~~v~~~~~~~~~   79 (112)
T cd04624          19 MAEENVGSVVVVDPDE-RPIGIVTERDIVRAVAAGI--DLDTPVSE----------------IMTRDLVTVDPDEPVAEA   79 (112)
T ss_pred             HHHcCCCEEEEECCCC-CEEEEeeHHHHHHHHhccC--CCccCHHH----------------hccCCCEEECCCCcHHHH
Confidence            4567788999999887 9999999999853321110  11223444                334578899999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +.+|.+++...+||++++|+++|++|++|+++
T Consensus        80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             HHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence            99999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.49  E-value=1.5e-13  Score=83.26  Aligned_cols=92  Identities=18%  Similarity=0.306  Sum_probs=73.6

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      +|.+.+++.+||+++ + +++|+++..|+.......   ....++.+++                ..++.++.++.++.+
T Consensus        18 ~~~~~~~~~~~v~~~-~-~~~G~v~~~~l~~~~~~~---~~~~~v~~~~----------------~~~~~~v~~~~~~~~   76 (110)
T cd04588          18 LFNTHHIHGAPVVDD-G-KLVGIVTLSDIAHAIARG---LELAKVKDVM----------------TKDVITIDEDEQLYD   76 (110)
T ss_pred             HHHHcCCCEEEEeeC-C-EEEEEEEHHHHHHHHhcc---ccccCHHHHh----------------cCCceEECCCCCHHH
Confidence            356678899999998 7 999999999996432211   1112445543                457889999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++.|.+.+.+.+||++++|+++|+|+..|+++
T Consensus        77 ~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          77 AIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             HHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            999999999999999998899999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.49  E-value=2e-13  Score=83.87  Aligned_cols=103  Identities=21%  Similarity=0.315  Sum_probs=72.6

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+.++..+||+|+ + +++|+++..|+.........   .....+......   . ......|.+++.++.+++++.++
T Consensus        19 ~~~~~~~~~~V~d~-~-~~~G~i~~~~l~~~~~~~~~---~~~~~~~~~~~~---~-~~~~~~~~~~~~~v~~~~~l~~~   89 (122)
T cd04585          19 MKENSIRRLPVVDR-G-KLVGIVTDRDLKLASPSKAT---TLDIWELYYLLS---K-IKVSDIMTRDPITVSPDASVEEA   89 (122)
T ss_pred             HHhCCcceeeEecC-C-eEEEEEeHHHHHHhhhcccc---cccchhhhhhhc---c-cCHHHhccCCCeEeCCCCcHHHH
Confidence            45667889999997 6 99999999999654221110   000000000000   0 00011455678999999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +..|.+.+.+.+||++++|+++|+||..|+++
T Consensus        90 ~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          90 AELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             HHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            99999999999999998899999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.48  E-value=1.4e-13  Score=97.43  Aligned_cols=99  Identities=13%  Similarity=0.136  Sum_probs=78.1

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      +.+++++.+||++++.++++|+++.+|+.......   ....++.++                |+ ++.++++++++.++
T Consensus        95 i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~---~~~~~l~~l----------------~r-~~~~V~e~~~l~~~  154 (292)
T PRK15094         95 IIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSD---AEAFSMDKV----------------LR-QAVVVPESKRVDRM  154 (292)
T ss_pred             HHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhcc---CCcCCHHHH----------------cC-CCcCcCCCCcHHHH
Confidence            46788999999987634899999999996432111   011123443                33 45689999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~  122 (126)
                      ++.|.+++.+.+||+|+.|.++|+||+.|+++.+...+.
T Consensus       155 L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~  193 (292)
T PRK15094        155 LKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIE  193 (292)
T ss_pred             HHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCc
Confidence            999999999999999999999999999999999877654

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=1.9e-13  Score=83.03  Aligned_cols=93  Identities=18%  Similarity=0.246  Sum_probs=69.5

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++...++|.+ ++ +++|+++.+|+.........++...++.+++                ..++.++.+++++.++
T Consensus        19 ~~~~~~~~~~v~~-~~-~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~----------------~~~~~~v~~~~~l~~a   80 (112)
T cd04625          19 MAEQDLGSLVVME-RG-ELVGLLTFREVLQAMAQHGAGVLDTTVRAIM----------------NPEPIVASPDDSIDEV   80 (112)
T ss_pred             HHHcCCCeEEEee-CC-EEEEEEEHHHHHHHHHhcCCchhcCCHHHHh----------------CCCCeEECCCCCHHHH
Confidence            4455666677665 46 9999999999964322110111223455544                4467889999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++|.+++...+||++ +|+++|+||.+|+++
T Consensus        81 ~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          81 RRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             HHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence            9999999999999999 599999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.48  E-value=3.2e-13  Score=81.34  Aligned_cols=88  Identities=23%  Similarity=0.338  Sum_probs=71.5

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      +|.+.+.+.+||+|+ + +++|+++..|+.....       ..++.++                |..++.++.+++++.+
T Consensus        19 ~~~~~~~~~~~v~d~-~-~~~g~v~~~~l~~~~~-------~~~~~~~----------------~~~~~~~v~~~~~l~~   73 (107)
T cd04610          19 LIKETGHDGFPVVDN-G-KVVGIVSARDLLGKDP-------DETVEEI----------------MSKDLVVAVPEMDIMD   73 (107)
T ss_pred             HHHHcCCCeeeEeEC-C-EEEEEEEHHHhhccCc-------cccHHHh----------------CCCCCeEECCCCCHHH
Confidence            345567788999986 6 9999999999964311       1134443                3456788999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++.|.+++.+.+||++++|+++|+++..|+++
T Consensus        74 ~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          74 AARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             HHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            999999999999999998899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.48  E-value=1.6e-13  Score=83.16  Aligned_cols=92  Identities=22%  Similarity=0.326  Sum_probs=72.4

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+.+++.+||+|+ + +++|+++..|+.........  ...++.+                .|..++.++.+++++.++
T Consensus        19 ~~~~~~~~~~v~~~-~-~~~G~v~~~dl~~~~~~~~~--~~~~~~~----------------~~~~~~~~v~~~~~~~~~   78 (111)
T cd04612          19 MFGERHRGYPVVDD-G-RLVGIVTLADIRRVPAEGRE--ATVLVGD----------------VMTRDPVTASPDETLRDA   78 (111)
T ss_pred             HHHcCCCcceEeeC-C-eEEEEEEHHHHHHHHhcCcc--cccCHHH----------------hccCCCeEECCCCCHHHH
Confidence            45667889999998 6 99999999999643221110  0012223                345678999999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus        79 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          79 LKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             HHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            99999999999999998899999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.48  E-value=1.1e-13  Score=84.21  Aligned_cols=93  Identities=17%  Similarity=0.255  Sum_probs=72.0

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeecccccc-CcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRG-CHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      |.+++.+.+||+++ + +++|+++..|+.. +....... ...++.++                |..++.++.+++++.+
T Consensus        19 ~~~~~~~~~~V~~~-~-~~~G~v~~~dl~~~~~~~~~~~-~~~~v~~i----------------~~~~~~~v~~~~~l~~   79 (113)
T cd04587          19 MREKRVSCVLVMDG-N-KLVGIFTSKDIALRVVAQGLDP-ESTLVERV----------------MTPNPVCATSDTPVLE   79 (113)
T ss_pred             HHHcCCCeEEEEEC-C-EEEEEEEhHHHHHHHHhcCCCc-CcCCHHHh----------------cCCCCeEEcCCCCHHH
Confidence            55677889999987 6 9999999999952 21111000 01234443                4557789999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++.|.+++.+.+||++++++++|+||..|++.
T Consensus        80 ~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          80 ALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             HHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            999999999999999998899999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.48  E-value=8.6e-14  Score=88.74  Aligned_cols=96  Identities=14%  Similarity=0.250  Sum_probs=74.5

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|++++++.+||+++ + +++|.||..++-....+...+.....+.++|                ..++.+|++++++..
T Consensus        90 lM~~~g~SQlPVi~~-~-k~VGsItE~~iv~~~le~~e~i~~~~vr~vM----------------~e~fP~Vs~~~~l~v  151 (187)
T COG3620          90 LMRDKGISQLPVIEE-D-KVVGSITENDIVRALLEGMESIRSLRVREVM----------------GEPFPTVSPDESLNV  151 (187)
T ss_pred             HHHHcCCccCceeeC-C-eeeeeecHHHHHHHHhccccchhhhhHHHHh----------------cCCCCcCCCCCCHHH
Confidence            477899999999987 5 8999999999954422222333455666655                558999999999988


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      +-.++..+  ..+.|++ +|+++||||+.|+++.+..
T Consensus       152 I~~LL~~~--~AVlV~e-~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         152 ISQLLEEH--PAVLVVE-NGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             HHHHHhhC--CeEEEEe-CCceEEEEeHHHHHHHHhc
Confidence            87766655  5677884 8999999999999998764

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=2.7e-13  Score=83.43  Aligned_cols=93  Identities=24%  Similarity=0.381  Sum_probs=72.0

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHH---------hhhhhcHHHHHHHHhcCCCCCCCccccccceEEE
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQ---------TWLPLTALEFTQQVLTSPLFSESNTTQQRELLTC   74 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v   74 (126)
                      |.+++++.+||+|+ + +++|+++..|+.........         .+...++.+                +|..++.++
T Consensus        19 l~~~~~~~i~V~~~-~-~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~v   80 (121)
T cd04633          19 MLDHDISRLPVIEG-G-KLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD----------------IMTRPVITI   80 (121)
T ss_pred             HHHcCCCeeEEEEC-C-EEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH----------------HccCCceEE
Confidence            45678889999997 6 99999999999654221111         011112222                345678899


Q ss_pred             eCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           75 QVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        75 ~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      .+++++.+++..|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          81 EPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             CCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence            99999999999999999999999997 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=4.2e-13  Score=82.81  Aligned_cols=95  Identities=21%  Similarity=0.319  Sum_probs=73.0

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHH-------Hh--hhhhcHHHHHHHHhcCCCCCCCccccccceEE
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVL-------QT--WLPLTALEFTQQVLTSPLFSESNTTQQRELLT   73 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~   73 (126)
                      +|.+++++.+||+|+ + +++|+++..|+........       .+  ....++.+                .|..++.+
T Consensus        18 ~~~~~~~~~~~V~d~-~-~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~   79 (122)
T cd04637          18 IFEKHKFHHLLVVED-N-ELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ----------------IMTRDPIT   79 (122)
T ss_pred             HHHhCCCCEEEEEeC-C-eEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH----------------hhcCCCee
Confidence            356678899999997 6 9999999999954321110       00  00112223                34557889


Q ss_pred             EeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           74 CQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        74 v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +.+++++.++++.|.+++...+||+|++++++|++++.|+++
T Consensus        80 v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          80 VSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             eCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            999999999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.47  E-value=4.2e-13  Score=100.00  Aligned_cols=95  Identities=20%  Similarity=0.204  Sum_probs=79.0

Q ss_pred             CCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHHH
Q 039385            7 PNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGK   86 (126)
Q Consensus         7 ~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~~   86 (126)
                      +++..++|+|+++ +++|+++.+|+.....       ..++.++|                ++++.++++++++.+|++.
T Consensus       165 ~~~~~v~Vvd~~~-~l~GvV~l~dLl~a~~-------~~~v~~im----------------~~~~~~v~~~~~~~eal~~  220 (449)
T TIGR00400       165 EDIYTLYVTNESK-HLKGVLSIRDLILAKP-------EEILSSIM----------------RSSVFSIVGVNDQEEVARL  220 (449)
T ss_pred             cceeEEEEECCCC-eEEEEEEHHHHhcCCC-------CCcHHHHh----------------CCCCeeECCCCCHHHHHHH
Confidence            4567889999887 9999999999854321       12455544                5578899999999999999


Q ss_pred             HHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhhhc
Q 039385           87 ALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADF  125 (126)
Q Consensus        87 m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~~~  125 (126)
                      |.+++...+||+|++|+++|+||..|+++.+.+...+|.
T Consensus       221 m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~~ed~  259 (449)
T TIGR00400       221 IQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEATEDF  259 (449)
T ss_pred             HHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhhHHHH
Confidence            999999999999999999999999999999988766553

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.47  E-value=5.2e-13  Score=80.16  Aligned_cols=87  Identities=21%  Similarity=0.319  Sum_probs=71.0

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      +|.+++...+||+| ++ +++|+++..|+.....       ..++.++                |..++.++.+++++.+
T Consensus        18 ~~~~~~~~~~~V~d-~~-~~~Giv~~~~l~~~~~-------~~~~~~~----------------~~~~~~~v~~~~~l~~   72 (105)
T cd04599          18 LMEKHRIGGLPVVE-DG-KLVGIITSRDVRRAHP-------NRLVADA----------------MTREVVTISPEASLLE   72 (105)
T ss_pred             HHHHcCCCEEEEEE-CC-EEEEEEehHHhhcccc-------cCCHHHH----------------ccCCCEEECCCCCHHH
Confidence            35667888999998 46 9999999999965421       1134443                3457889999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++.|.+++...+||+|+ |+++|+||..+++.
T Consensus        73 ~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~  104 (105)
T cd04599          73 AKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL  104 (105)
T ss_pred             HHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence            999999999999999996 99999999999873

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=2.4e-13  Score=83.06  Aligned_cols=93  Identities=18%  Similarity=0.214  Sum_probs=69.3

Q ss_pred             ccCCC-CceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCC--CCH
Q 039385            4 YKKPN-VERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVD--SPL   80 (126)
Q Consensus         4 ~~~~~-~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~--~~l   80 (126)
                      |.+++ ...+||+| ++ +++|+++..|+........ .....++.++                |..++.++.++  +++
T Consensus        19 ~~~~~~~~~~~v~~-~~-~~~G~v~~~dl~~~~~~~~-~~~~~~i~~~----------------~~~~~~~v~~~~~~~l   79 (115)
T cd04620          19 MSQQGDSSCVLVVE-KG-RLLGIFTERDIVRLTAIGK-DLSDLPIGEV----------------MTQPVVTLQESEIQDI   79 (115)
T ss_pred             HHhcCCCceEEEcC-CC-cEEEEEeHHHHHHHHhcCC-CccccCHHHh----------------cCCCcEEEecccccCH
Confidence            44556 56677776 46 8999999999964322110 0111244444                34577888887  789


Q ss_pred             HHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           81 SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        81 ~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      .++++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus        80 ~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          80 FTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             HHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            99999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.8e-13  Score=85.82  Aligned_cols=107  Identities=21%  Similarity=0.271  Sum_probs=73.2

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhh--hc----H-HHHHHHHhcCCCCCCCccccccceEEEe
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLP--LT----A-LEFTQQVLTSPLFSESNTTQQRELLTCQ   75 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~--~~----~-~~~~~~~~~~~~~~~~~~~m~~~~~~v~   75 (126)
                      +|.+.+++.+||+|+++ +++|+++..|+.............  ..    . .+..+.+.   ..+ ...+|.+++.++.
T Consensus        18 ~~~~~~~~~~~V~d~~~-~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-v~~~~~~~~~~v~   92 (132)
T cd04636          18 ILLTGKISGVPVVDNEG-RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLL---GKK-VEEIMTKKVITVD   92 (132)
T ss_pred             HHHHhCCCccceECCCC-CEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHc---CCC-HHHhccCCceEEC
Confidence            34567889999999887 999999999995432111000000  00    0 00000000   001 1124566788999


Q ss_pred             CCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           76 VDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        76 ~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++++.+++..|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus        93 ~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          93 EDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             CCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            9999999999999999999999997 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.45  E-value=1.2e-13  Score=102.85  Aligned_cols=99  Identities=20%  Similarity=0.256  Sum_probs=82.0

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |..++++++.++++++ .+.|++|.+|++........+ ...++++                +|+.|++++..++.+.+|
T Consensus       175 m~~~gv~s~v~l~~~~-~~~GIvT~~dl~~~v~~~g~~-~~~~V~e----------------vmT~p~~svd~~~~~feA  236 (610)
T COG2905         175 MKDEGVSSLVVLDDSG-PLLGIVTRKDLRSRVIADGRS-KTQKVSE----------------VMTSPVISVDRGDFLFEA  236 (610)
T ss_pred             HHhcCCCeEEEEcCCC-CccceeehHHHHHHHHhcCCC-cccchhh----------------hhccCceeecCcchHHHH
Confidence            4578999999999888 999999999996542222111 2335566                557799999999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~  121 (126)
                      +-.|.+++++++||++ +|+++|+||..||++.+.+..
T Consensus       237 ml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~~~  273 (610)
T COG2905         237 MLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQNS  273 (610)
T ss_pred             HHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCCCc
Confidence            9999999999999998 799999999999999987644

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.45  E-value=3.5e-13  Score=81.92  Aligned_cols=95  Identities=19%  Similarity=0.278  Sum_probs=74.6

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+.+++.+||+|+++ +++|+++..|+..+.... ..+...++.++                |.+++.++.+++++.+
T Consensus        18 ~~~~~~~~~~~v~~~~~-~~~G~v~~~~l~~~~~~~-~~~~~~~v~~~----------------~~~~~~~v~~~~~~~~   79 (114)
T cd04613          18 VIAHSPENNFPVVDDDG-RLVGIVSLDDIREILFDP-SLYDLVVASDI----------------MTKPPVVVYPEDSLED   79 (114)
T ss_pred             HHHhCCCcceeEECCCC-CEEEEEEHHHHHHHHhcc-cccccEEHHHh----------------ccCCCcEEcCCCCHHH
Confidence            35667888999999887 999999999996432111 00111344443                4557899999999999


Q ss_pred             HHHHHHhcCCCEEEEEcC-CCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQ-QRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~-~~~lvGivs~~dil~  115 (126)
                      +++.|.+.+...+||+++ +++++|+++..|++.
T Consensus        80 ~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          80 ALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             HHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            999999999999999997 799999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=3.4e-13  Score=81.99  Aligned_cols=93  Identities=24%  Similarity=0.264  Sum_probs=71.3

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccc-cCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLR-GCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      |.+.+...+||+|+ + +++|+++..|+. ....... .....++.++                |...+.++.+++++.+
T Consensus        19 ~~~~~~~~~~v~~~-~-~~~G~i~~~~l~~~~~~~~~-~~~~~~~~~~----------------~~~~~~~v~~~~~~~~   79 (113)
T cd04622          19 MREHDVGALPVCEN-D-RLVGIVTDRDIVVRAVAEGR-DPDTTTVGDV----------------MTRGVVTVTEDDDVDE   79 (113)
T ss_pred             HHHcCCCEEEEeeC-C-EEEEEEEhHHHHHHHhhccC-CcccCCHHHh----------------ccCCccEECCCCCHHH
Confidence            45667889999997 6 999999999985 2211110 0011124443                4457788999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++.|...+.+.+||++++|+++|++++.|+++
T Consensus        80 ~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          80 AARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             HHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.44  E-value=4.4e-13  Score=80.74  Aligned_cols=86  Identities=13%  Similarity=0.178  Sum_probs=70.1

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      +|.+.+++.+||+|+ + +++|+++..|+....        ..++.++                |..++.++.++.++.+
T Consensus        18 ~~~~~~~~~~~V~d~-~-~~~G~v~~~~l~~~~--------~~~~~~~----------------~~~~~~~v~~~~~l~~   71 (104)
T cd04594          18 IMIENDLLSLPVVDY-N-KFLGAVYLKDIENAT--------YGDVVDY----------------IVRGIPYVRLTSTAEE   71 (104)
T ss_pred             HHHHcCCcEEEEEEC-C-EEEEEEEHHHHhhhc--------ccchhhh----------------hhcCCcEEcCCCCHHH
Confidence            355678899999997 6 999999999986421        1123333                3446789999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++..|.+++...+||++ +|+++|++|..|++.
T Consensus        72 a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          72 AWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             HHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence            99999999999999998 699999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.44  E-value=1e-12  Score=98.88  Aligned_cols=96  Identities=18%  Similarity=0.145  Sum_probs=78.8

Q ss_pred             ccCCCCceeeEeeCC--CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            4 YKKPNVERNSISLGN--GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~--~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      |.+++++.+||+|+.  +++++|++|.+|+....      ....++.++|..              ..++.++.+++++.
T Consensus       126 m~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~------~~~~~V~eIMt~--------------~~~lvtv~~~~sL~  185 (505)
T PLN02274        126 KASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN------DRETKLSEVMTS--------------DDDLVTAPAGIDLE  185 (505)
T ss_pred             HHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc------ccCCcHHHHhcc--------------CCCcEEECCCCCHH
Confidence            567889999999974  23999999999996442      123467776622              12378999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++++.|.+++.+.+||+|++++++|+||++|+++.+.-
T Consensus       186 eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        186 EAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             HHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            99999999999999999989999999999999998753

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.44  E-value=6.2e-13  Score=98.01  Aligned_cols=96  Identities=19%  Similarity=0.135  Sum_probs=77.5

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      +.+++++.+||++++..+++|+++.+|+.....+     ...+..++                |+ ++.++++++++.++
T Consensus       219 ~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-----~~~~l~~~----------------~~-~~~~Vpe~~~l~~l  276 (408)
T TIGR03520       219 IIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-----KNFDWQSL----------------LR-EPYFVPENKKLDDL  276 (408)
T ss_pred             HHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-----CCCCHHHH----------------cC-CCeEeCCCCcHHHH
Confidence            5678999999998764589999999999532111     01123332                33 67899999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~  121 (126)
                      ++.|.+++.+..+|+|+.|..+|+||..|+++.+....
T Consensus       277 l~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei  314 (408)
T TIGR03520       277 LRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDI  314 (408)
T ss_pred             HHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCC
Confidence            99999999999999999999999999999999986543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.43  E-value=6.3e-13  Score=101.69  Aligned_cols=98  Identities=18%  Similarity=0.200  Sum_probs=77.0

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      +.+++.+.+||+|+++ +++|+++.+|+.....+.. +....++.+                .|.+++.++++++++.++
T Consensus       473 l~~~~~~~~~VvD~~g-~lvGiVt~~dL~~~l~~~~-~~~~~~v~d----------------im~~~~~~v~~d~~L~~a  534 (574)
T PRK01862        473 FLEYPVKYLYVVDDDG-RFRGAVALKDITSDLLDKR-DTTDKTAAD----------------YAHTPFPLLTPDMPLGDA  534 (574)
T ss_pred             HHhCCCceEEEEcCCC-eEEEEEEHHHHHHHhhccc-ccccchHHH----------------hccCCCeeECCCCCHHHH
Confidence            4567889999999887 9999999999964211110 001123344                445678899999999999


Q ss_pred             HHHHHhcCCCEEEEEcCC--CceEEEEeHHHHHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQ--RLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~--~~lvGivs~~dil~~~~~  119 (126)
                      +++|.+++.+.+||+|++  ++++|+||++|+++.+.+
T Consensus       535 l~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        535 LEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             HHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence            999999999999999876  489999999999998865

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.43  E-value=7.5e-13  Score=80.31  Aligned_cols=91  Identities=26%  Similarity=0.301  Sum_probs=71.7

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccC-cHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGC-HYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      |.+.+++.+||+|+ + +++|+++..|+... .....  ....++.+++                ..++.++.+++++.+
T Consensus        19 ~~~~~~~~i~V~~~-~-~~~G~v~~~~l~~~~~~~~~--~~~~~i~~~~----------------~~~~~~v~~~~~l~~   78 (111)
T cd04800          19 MTEHRVSSLLVVDD-G-RLVGIVTDRDLRNRVVAEGL--DPDTPVSEVM----------------TAPPITIPPDATVFE   78 (111)
T ss_pred             HHHcCCCeEEEEEC-C-EEEEEEEhHHHHHHHhccCC--CccCCHHHHh----------------CCCCeEECCCCcHHH
Confidence            45677889999997 6 99999999999642 11110  0122445543                457889999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++.|.+.+.+.+||+++ |+++|++|.+|+++
T Consensus        79 ~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          79 ALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             HHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            999999999999999996 99999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.43  E-value=5.2e-13  Score=80.88  Aligned_cols=82  Identities=17%  Similarity=0.217  Sum_probs=68.2

Q ss_pred             ccCCCCceeeEeeC---CCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCH
Q 039385            4 YKKPNVERNSISLG---NGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPL   80 (126)
Q Consensus         4 ~~~~~~~~~pVvd~---~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l   80 (126)
                      +.+++...+||+|+   ++ +++|+++..|+......            +                |..++.++++++++
T Consensus        20 ~~~~~~~~~~V~~~~~~~~-~~~G~v~~~dl~~~~~~------------~----------------m~~~~~~v~~~~~l   70 (105)
T cd04591          20 LSTTSHNGFPVVDSTEESP-RLVGYILRSQLVVALKN------------Y----------------IDPSPFTVSPRTSL   70 (105)
T ss_pred             HHhCCCCCcceEcCCCCCC-EEEEEEeHHHHHHHHHH------------h----------------ccCCCceECCCCcH
Confidence            45667888999998   56 99999999998532110            2                34577899999999


Q ss_pred             HHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           81 SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        81 ~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      .++++.|.+++.+.+||++ +|+++|+||+.|+++
T Consensus        71 ~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          71 EKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             HHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence            9999999999999999996 789999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.42  E-value=1.2e-12  Score=97.84  Aligned_cols=92  Identities=18%  Similarity=0.186  Sum_probs=76.7

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++++.+||+|+ + +++|++|.+|+.....       ..++.++                |+.+++++.+++++.+|
T Consensus       114 m~~~~~~~~vVvD~-g-klvGIVT~rDL~~~~~-------~~~V~dI----------------Mt~~litv~~~~sL~eA  168 (475)
T TIGR01303       114 IHKRAHGAAVVILE-D-RPVGLVTDSDLLGVDR-------FTQVRDI----------------MSTDLVTAPADTEPRKA  168 (475)
T ss_pred             HHhcCCeEEEEEEC-C-EEEEEEEHHHhhcCCC-------CCCHHHH----------------ccCCceEeCCCCcHHHH
Confidence            56678888999884 5 8999999999964421       1245554                45688999999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      +.+|.+++++.+||+|++++++|+||.+||++.....
T Consensus       169 l~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       169 FDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT  205 (475)
T ss_pred             HHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence            9999999999999999889999999999999976544

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.40  E-value=1.2e-12  Score=80.46  Aligned_cols=95  Identities=19%  Similarity=0.313  Sum_probs=72.9

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHH--------hhhhhcHHHHHHHHhcCCCCCCCccccccceEEE
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQ--------TWLPLTALEFTQQVLTSPLFSESNTTQQRELLTC   74 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v   74 (126)
                      +|.+.+.+.+||+|+++ +++|+++..|+.........        .....++.++                |..++.++
T Consensus        18 ~~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~----------------~~~~~~~i   80 (121)
T cd04584          18 LMREHKIRHLPVVDEEG-RLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEI----------------MTKDVITV   80 (121)
T ss_pred             HHHHcCCCcccEECCCC-cEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHH----------------hhCCCeEE
Confidence            34567788999999887 99999999998643221100        0111233343                34577899


Q ss_pred             eCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           75 QVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        75 ~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      .+++++.++++.|.+.+...+||+++ |+++|++|..|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          81 HPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            99999999999999999999999986 99999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.39  E-value=1.3e-12  Score=79.34  Aligned_cols=92  Identities=17%  Similarity=0.164  Sum_probs=71.6

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+.+...+||+|+ + ++.|+++..|+........ ...+.++.+++                ..++.++.+++++.++
T Consensus        19 ~~~~~~~~~~V~d~-~-~~~G~v~~~~l~~~~~~~~-~~~~~~i~~~~----------------~~~~~~v~~~~~l~~~   79 (111)
T cd04589          19 MREHGADALLVRDG-D-PRLGIVTRTDLLDAVLLDG-LPSSTPVGEIA----------------TFPLITVDPDDFLFNA   79 (111)
T ss_pred             HHHcCCCEEEEecC-C-eEEEEEEHHHHHHHHHcCC-CCCCCCHHHHh----------------CCCcEEECCCCcHHHH
Confidence            45667888999998 6 8999999999864321110 01123445543                4577899999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++.|.+++.+.+||++ +++++|+||..|+++
T Consensus        80 ~~~~~~~~~~~~~Vv~-~~~~~G~it~~dl~~  110 (111)
T cd04589          80 LLLMTRHRIHRVVVRE-GGEVVGVLEQTDLLS  110 (111)
T ss_pred             HHHHHHhCccEEEEee-CCEEEEEEEhHHhhc
Confidence            9999999999999998 489999999999976

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=1.7e-12  Score=78.84  Aligned_cols=94  Identities=20%  Similarity=0.211  Sum_probs=71.1

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      +|.+.+.+.+||+|+ + +++|+++..|+..............++.++                |..++.++.+++++.+
T Consensus        18 ~~~~~~~~~~~v~~~-~-~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~~v~~~~~l~~   79 (112)
T cd04802          18 IMTENNIGRLIVVDN-E-KPVGIITERDLVKKVVSRNLKPREVPVGEV----------------MSTPLITIDPNASLNE   79 (112)
T ss_pred             HHHHCCCCEEEEEEC-C-EEEEEEEHHHHHHHHhhccCCcccCCHHHh----------------cCCCcEEECCCCCHHH
Confidence            356677899999985 5 899999999996421111000012234443                3457889999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++++|.+.+.+.+||+|++ +++|+|++.|+++
T Consensus        80 ~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          80 AAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             HHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence            9999999999999999965 9999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.39  E-value=1.4e-12  Score=97.26  Aligned_cols=93  Identities=18%  Similarity=0.316  Sum_probs=77.8

Q ss_pred             cccCCCCceeeEeeCC---CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccc-cceEEEeCCC
Q 039385            3 WYKKPNVERNSISLGN---GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQ-RELLTCQVDS   78 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~---~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~-~~~~~v~~~~   78 (126)
                      .+.+++++.+||+|++   + +++|+++.+|+....  .    ...++.++|                + .++.++.+++
T Consensus       105 ~m~~~~~s~lpVvd~~~~~~-~lvGIVt~rDL~~~~--~----~~~~V~dvm----------------~~~~~~~V~~~~  161 (450)
T TIGR01302       105 LMERKGISGIPVVEDGDMTG-KLVGIITKRDIRFVK--D----KGKPVSEVM----------------TREEVITVPEGI  161 (450)
T ss_pred             HHHHcCCCEEEEEeCCCCCC-eEEEEEEHHHHhhhh--c----CCCCHHHhh----------------CCCCCEEECCCC
Confidence            3567889999999987   5 999999999996321  1    123555654                4 3789999999


Q ss_pred             CHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           79 PLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        79 ~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++++.|.+++.+.+||+|++|+++|+||+.|+++.+.
T Consensus       162 sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       162 DLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK  201 (450)
T ss_pred             cHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence            9999999999999999999999999999999999998763

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.39  E-value=1.3e-12  Score=98.17  Aligned_cols=93  Identities=17%  Similarity=0.168  Sum_probs=77.8

Q ss_pred             cccCCCCceeeEeeCC--CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCcccccc--ceEEEeCCC
Q 039385            3 WYKKPNVERNSISLGN--GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQR--ELLTCQVDS   78 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~--~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~--~~~~v~~~~   78 (126)
                      +|.+++++.+||+|++  +++++|+++.+|+.....      ...++.++|                ++  ++.++.+++
T Consensus       121 lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~------~~~~V~diM----------------t~~~~lvtv~~~~  178 (495)
T PTZ00314        121 IKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKD------KSTPVSEVM----------------TPREKLVVGNTPI  178 (495)
T ss_pred             HHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhccc------CCCCHHHhh----------------CCcCCceEeCCCC
Confidence            4677899999999974  239999999999964321      123566655                33  788999999


Q ss_pred             CHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           79 PLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        79 ~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      ++.+++++|.+++.+.+||+|++++++|+||++|+++..
T Consensus       179 sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        179 SLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             CHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence            999999999999999999999999999999999999874

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=1.5e-12  Score=78.31  Aligned_cols=95  Identities=23%  Similarity=0.312  Sum_probs=73.3

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      +|.+++...+||+|+++ +++|+++..|+.......... ....+.+                .|..++.++.+++++.+
T Consensus        18 ~~~~~~~~~~~v~~~~~-~~~G~v~~~~l~~~~~~~~~~-~~~~~~~----------------~~~~~~~~~~~~~~~~~   79 (113)
T cd02205          18 LMLEHGISGLPVVDDDG-RLVGIVTERDLLRALAEGGLD-PLVTVGD----------------VMTRDVVTVSPDTSLEE   79 (113)
T ss_pred             HHHhcCCceEEEECCCC-CEEEEEeHHHHHHHHHhccCC-ccccHHH----------------HhcCCceecCCCcCHHH
Confidence            45667789999999877 999999999995432221100 0001222                23457788999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++..|.+.+.+.+||+|++++++|+++..|+++
T Consensus        80 ~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          80 AAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.38  E-value=1.3e-12  Score=78.89  Aligned_cols=92  Identities=21%  Similarity=0.299  Sum_probs=69.1

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||+|+ + +++|+++..|+.......... ...++.+++                ..++.++++++++.+
T Consensus        18 ~~~~~~~~~~~V~~~-~-~~~G~v~~~dl~~~~~~~~~~-~~~~~~~~~----------------~~~~~~v~~~~~l~~   78 (110)
T cd04609          18 RMREYGVSQLPVVDD-G-RVVGSIDESDLLDALIEGKAK-FSLPVREVM----------------GEPLPTVDPDAPIEE   78 (110)
T ss_pred             HHHHcCCceeeEeeC-C-eeEEEEeHHHHHHHHhccccc-cCcCHHHHh----------------cCCCceeCCCCcHHH
Confidence            356678899999997 6 999999999996542221110 112444443                446788999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++..|.+ . ..+||++++|+++|+||++|+++
T Consensus        79 ~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          79 LSELLDR-G-NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             HHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence            9999887 3 34789988899999999999975

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.37  E-value=3.4e-12  Score=95.96  Aligned_cols=92  Identities=21%  Similarity=0.293  Sum_probs=76.9

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccc-cceEEEeCCCCHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQ-RELLTCQVDSPLSE   82 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~-~~~~~v~~~~~l~~   82 (126)
                      |.+++++.+||+|+++ +++|+++.+|+....  .    ...++.++|                . ++++++.+++++.+
T Consensus       113 m~~~~~~~lpVvd~~g-~lvGiVt~~DL~~~~--~----~~~~V~dim----------------~~~~~v~v~~~~sl~e  169 (486)
T PRK05567        113 MARYGISGVPVVDENG-KLVGIITNRDVRFET--D----LSQPVSEVM----------------TKERLVTVPEGTTLEE  169 (486)
T ss_pred             HHHhCCCEEEEEccCC-EEEEEEEHHHhhhcc--c----CCCcHHHHc----------------CCCCCEEECCCCCHHH
Confidence            4567899999999877 999999999995321  1    122455544                3 57899999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      +++.|.+++.+.+||+|++|+++|+||+.|+++.+.
T Consensus       170 al~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~  205 (486)
T PRK05567        170 ALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE  205 (486)
T ss_pred             HHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence            999999999999999999999999999999998763

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=1.2e-11  Score=74.49  Aligned_cols=87  Identities=24%  Similarity=0.324  Sum_probs=69.8

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+.+.+.+||+++++ +++|+++..++......       .+..++                |..++.++.+++++.++
T Consensus        19 ~~~~~~~~~~v~~~~~-~~~g~v~~~~l~~~~~~-------~~~~~~----------------~~~~~~~v~~~~~l~~~   74 (106)
T cd04638          19 LKEYKVSGVPVVKKSG-ELVGIITRKDLLRNPEE-------EQLALL----------------MTRDPPTVSPDDDVKEA   74 (106)
T ss_pred             HHHcCCCeEEEEcCCC-cEEEEEEHHHHHhcccc-------chHHHH----------------hcCCCceECCCCCHHHH
Confidence            4566788999999876 99999999998532111       123332                34577889999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +..|.+.+.+.+||+| +|+++|++|..|+++
T Consensus        75 ~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~  105 (106)
T cd04638          75 AKLMVENNIRRVPVVD-DGKLVGIVTVADIVR  105 (106)
T ss_pred             HHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence            9999999999999999 479999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.32  E-value=9.9e-12  Score=76.20  Aligned_cols=94  Identities=18%  Similarity=0.266  Sum_probs=69.0

Q ss_pred             ccCCC-CceeeEeeCCCceeEEEeeccccccCcHHH--HHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCH
Q 039385            4 YKKPN-VERNSISLGNGWRLIGTFSASDLRGCHYAV--LQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPL   80 (126)
Q Consensus         4 ~~~~~-~~~~pVvd~~~~~l~G~is~~dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l   80 (126)
                      +...+ ++.+||+|+ + +++|+++..|+.......  ...+...++.+                .|..++.++.+++++
T Consensus        19 ~~~~~~~~~~~Vvd~-~-~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~----------------~~~~~~~~v~~~~~~   80 (119)
T cd04598          19 FERDPDLSALAVVDD-G-RPVGLIMREALMELLSTPYGRALYGKKPVSE----------------VMDPDPLIVEADTPL   80 (119)
T ss_pred             HHhCCCccEEEEEEC-C-eeEEEEEHHHHHHHHhchhhHHHHcCCcHHH----------------hcCCCcEEecCCCCH
Confidence            44444 789999998 7 999999999996431111  00001223333                445688999999999


Q ss_pred             HHHHHHHHhcCCC---EEEEEcCCCceEEEEeHHHHHH
Q 039385           81 SEVIGKALTKHVH---RVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        81 ~~~~~~m~~~~~~---~lpVvd~~~~lvGivs~~dil~  115 (126)
                      .+++..|.+++..   ..||++++|+++|+||..|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            9999999888754   4468888899999999999875

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=1.4e-11  Score=78.45  Aligned_cols=108  Identities=18%  Similarity=0.287  Sum_probs=72.1

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHH--Hh--------hhhhcHH------HHHHHHhcCCCCCCCcccc
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVL--QT--------WLPLTAL------EFTQQVLTSPLFSESNTTQ   67 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~--~~--------~~~~~~~------~~~~~~~~~~~~~~~~~~m   67 (126)
                      +.+.+++.+||+|+ + +++|+++..|+........  ..        ....++.      ++..........+ ....|
T Consensus        19 ~~~~~~~~~~Vvd~-~-~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~   95 (143)
T cd04634          19 LRENKISGAPVLDG-G-KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETKRALTDAGKMK-VRDIM   95 (143)
T ss_pred             HHHcCCCcceEeEC-C-eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHHHHHHHHhcCC-HHHHc
Confidence            45678899999997 6 9999999999854311110  00        0000111      1111000000000 11245


Q ss_pred             ccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           68 QRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        68 ~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ..++.++.+++++.+++..|.+.+...+||+++ ++++|+++..|+++
T Consensus        96 ~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          96 TKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             CCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            668899999999999999999999999999996 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.30  E-value=1.3e-11  Score=91.38  Aligned_cols=96  Identities=20%  Similarity=0.270  Sum_probs=82.9

Q ss_pred             CCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHH
Q 039385            6 KPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIG   85 (126)
Q Consensus         6 ~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~   85 (126)
                      ...+..+.|+|+++ ++.|++|.+++....++.       .+.++|                .+.+.++.++++.+++.+
T Consensus       165 ~e~~~~lyVvD~~~-~L~Gvvsl~~Ll~a~~~~-------~i~~im----------------~~~~~~V~~~~dqeevA~  220 (451)
T COG2239         165 AETIYYLYVVDEKG-KLLGVVSLRDLLTAEPDE-------LLKDLM----------------EDDVVSVLADDDQEEVAR  220 (451)
T ss_pred             ccccceEEEECCcc-ceEEEeeHHHHhcCCcHh-------HHHHHh----------------cccceeecccCCHHHHHH
Confidence            35678899999998 999999999997543333       455544                456899999999999999


Q ss_pred             HHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhhhc
Q 039385           86 KALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADF  125 (126)
Q Consensus        86 ~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~~~  125 (126)
                      .+.+++.-.+||||++++++|+||..|++..+.+...+|+
T Consensus       221 ~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa~eDi  260 (451)
T COG2239         221 LFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEATEDI  260 (451)
T ss_pred             HHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998887775

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.29  E-value=9.1e-12  Score=86.97  Aligned_cols=88  Identities=19%  Similarity=0.221  Sum_probs=69.5

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      ++.+.+++.+||+|+++ +++|+++..|+.......  .....++.+                +|.+++.++.+++++.+
T Consensus       181 ~~~~~~~~~~~Vvd~~g-~~~Givt~~dl~~~~~~~--~~~~~~v~~----------------im~~~~~~v~~~~~l~~  241 (268)
T TIGR00393       181 EMSEKRLGSAIVCDENN-QLVGVFTDGDLRRALLGG--GSLKSEVRD----------------FMTLGPKTFKLDALLLE  241 (268)
T ss_pred             HHhhcCCcEEEEEeCCC-CEEEEEEcHHHHHHHhcC--CcccCcHHH----------------hCCCCCeEECCCCcHHH
Confidence            35567889999999887 999999999996431111  001224444                44567889999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEe
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVS  109 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs  109 (126)
                      |+++|.+.+.+.+||+|++|+++|+|+
T Consensus       242 a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       242 ALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             HHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence            999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.29  E-value=1.1e-11  Score=75.62  Aligned_cols=91  Identities=22%  Similarity=0.366  Sum_probs=71.4

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      +.++++..+||++..  +++|++|.+|+..........  ..++.+                +|..++.++.++.++.++
T Consensus        25 m~~~~~~~~~v~~~~--~l~Giit~~di~~~~~~~~~~--~~~v~~----------------v~~~~~~~~~~~~~~~~~   84 (117)
T COG0517          25 MSENGVSAVPVVDDG--KLVGIITERDILRALAAGGKR--LLPVKE----------------VMTKPVVTVDPDTPLEEA   84 (117)
T ss_pred             HHHcCCCEEEEeeCC--EEEEEEEHHHHHHHHhccCCc--cccHHH----------------hccCCcEEECCCCCHHHH
Confidence            567889999999853  699999999996542222110  002333                445588999999999999


Q ss_pred             HHHHHh-cCCCEEEEEcCCC-ceEEEEeHHHHH
Q 039385           84 IGKALT-KHVHRVWVVDQQR-LLLGLVSLTDMI  114 (126)
Q Consensus        84 ~~~m~~-~~~~~lpVvd~~~-~lvGivs~~dil  114 (126)
                      ++.|.+ +++..+||+++++ +++|++|..|++
T Consensus        85 ~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          85 LELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             HHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            999999 7999999999886 999999999874

>PRK11573 hypothetical protein; Provisional

Probab=99.23  E-value=6.9e-11  Score=87.32  Aligned_cols=101  Identities=15%  Similarity=0.107  Sum_probs=78.6

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      +.+++++.+||++++-..++|++..+|+....... .   ..+..++.+             .+ +++.+|+++.++.++
T Consensus       215 ~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~-~---~~~~~~l~~-------------~~-r~~~~Vpe~~~l~~l  276 (413)
T PRK11573        215 LTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK-K---EFTKENMLR-------------AA-DEIYFVPEGTPLSTQ  276 (413)
T ss_pred             HHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc-C---cCCHHHHHh-------------hc-cCCeEeCCCCcHHHH
Confidence            46789999999987645899999999996431111 0   011222211             22 477889999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~  122 (126)
                      ++.|.+++.|...|+|+.|...|+||..||++.+...+.
T Consensus       277 L~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~  315 (413)
T PRK11573        277 LVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFT  315 (413)
T ss_pred             HHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999876653

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.21  E-value=3.6e-11  Score=91.64  Aligned_cols=54  Identities=22%  Similarity=0.282  Sum_probs=50.2

Q ss_pred             cccc-cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           65 TTQQ-RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        65 ~~m~-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      .+|+ +++.++++++++.++.+.|.+++.+.+||+|++|+++|+||++|+++...
T Consensus       250 ~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~  304 (546)
T PRK14869        250 YIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVR  304 (546)
T ss_pred             HhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcccc
Confidence            3788 88999999999999999999999999999999999999999999998654

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.13  E-value=1.7e-10  Score=86.17  Aligned_cols=93  Identities=12%  Similarity=0.192  Sum_probs=69.1

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++++.+||+|+++ +++|+++..|+........ .....++.++|                ..++.++.+++++.++
T Consensus       361 m~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~-~~~~~~v~~im----------------~~~~~~v~~~~~l~~a  422 (454)
T TIGR01137       361 LREYGFDQLPVVTEAG-KVLGSVTLRELLSALFAGK-ANPDDAVSKVM----------------SKKFIQIGEGEKLSDL  422 (454)
T ss_pred             HHHcCCCEEEEEcCCC-eEEEEEEHHHHHHHHhccC-CCcCCCHHHhc----------------CCCCeEECCcCcHHHH
Confidence            5567889999999877 9999999999964211110 01122455544                5577899999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      +.+|.+++   .|||+++++++|+||++|+++.+
T Consensus       423 ~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       423 SKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             HHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence            99998753   34555579999999999999875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.11  E-value=2.3e-10  Score=85.05  Aligned_cols=99  Identities=22%  Similarity=0.180  Sum_probs=77.1

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      +.+++++.+||++++...++|++..+|+.........   ......                .. .+++.+++++++.++
T Consensus       234 ~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~~~~~----------------~~-~~~~~Vpet~~~~~l  293 (429)
T COG1253         234 ILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DLDLRV----------------LV-RPPLFVPETLSLSDL  293 (429)
T ss_pred             HHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---ccchhh----------------cc-cCCeEecCCCcHHHH
Confidence            4578899999999444489999999999533111100   001111                11 277889999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~  122 (126)
                      ++.|.+.+.|...|+|+.|...|+||+.||++.+...+.
T Consensus       294 L~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~  332 (429)
T COG1253         294 LEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIP  332 (429)
T ss_pred             HHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCc
Confidence            999999999999999999999999999999999987655

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.10  E-value=1.4e-10  Score=73.25  Aligned_cols=91  Identities=15%  Similarity=0.091  Sum_probs=61.3

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHH-HHhh---------hhhcHHHHHHHHhcCCCCCCCccccccceEE
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAV-LQTW---------LPLTALEFTQQVLTSPLFSESNTTQQRELLT   73 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~   73 (126)
                      |.+++++.+||+|+++ +++|++|..|+....... ....         ....+.+++....       ..+.|..++++
T Consensus        19 m~~~~~~~~~VvD~~g-~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-------~~~~~~~~~~~   90 (133)
T cd04592          19 MLDEKQSCVLVVDSDD-FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI-------SYGGQECGLWT   90 (133)
T ss_pred             HHHcCCCEEEEECCCC-eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh-------hhcccCCCCEE
Confidence            4567889999999888 999999999986432111 0000         0000122321100       00124567899


Q ss_pred             EeCCCCHHHHHHHHHhcCCCEEEEEcCCC
Q 039385           74 CQVDSPLSEVIGKALTKHVHRVWVVDQQR  102 (126)
Q Consensus        74 v~~~~~l~~~~~~m~~~~~~~lpVvd~~~  102 (126)
                      +.+++++.+|++.|.+++.+.+||+|+++
T Consensus        91 v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          91 CTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             ECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence            99999999999999999999999998544

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.99  E-value=2.7e-09  Score=78.62  Aligned_cols=93  Identities=18%  Similarity=0.230  Sum_probs=73.7

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      +...+.+.++|+|+++ ++.|.++.+++.......      .++.+.+                .....++.+++++.++
T Consensus       303 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~------~~~~~~~----------------~~~~~~~~~~~~~~~~  359 (400)
T PRK10070        303 LQDEDREYGYVIERGN-KFVGAVSIDSLKTALTQQ------QGLDAAL----------------IDAPLAVDAQTPLSEL  359 (400)
T ss_pred             HHhcCCceEEEEcCCC-cEEEEEeHHHHHhhhhcC------Cchhhhh----------------ccCCceeCCCCCHHHH
Confidence            4557788999999988 999999999995432111      1233322                2356789999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      +..+.+.... +||+|++|+++|+||+.++++.+.+.
T Consensus       360 ~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        360 LSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             HHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            9999987666 99999999999999999999998654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.95  E-value=4.2e-09  Score=76.71  Aligned_cols=92  Identities=18%  Similarity=0.303  Sum_probs=72.7

Q ss_pred             cCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHH
Q 039385            5 KKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVI   84 (126)
Q Consensus         5 ~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~   84 (126)
                      ...+...+.|+|+++ ++.|.++.+++.......      ..+.+.+                ...+.++.+++++.+++
T Consensus       269 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~------~~~~~~~----------------~~~~~~~~~~~~~~~~~  325 (363)
T TIGR01186       269 RDERVDSLYVVDRQN-KLVGVVDVESIKQARKKA------QGLQDVL----------------IDDIYTVDAGTLLRETV  325 (363)
T ss_pred             HhcCCceEEEEcCCC-CEEEEEeHHHHHHHhhcC------Cchhhhh----------------ccCCceECCCCcHHHHH
Confidence            345677889999888 999999988885321111      1233322                34567899999999999


Q ss_pred             HHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           85 GKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        85 ~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      ..|.+++.. +||+|++|+++|+||+.+++..+.+.
T Consensus       326 ~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~  360 (363)
T TIGR01186       326 RKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS  360 (363)
T ss_pred             HHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence            999999888 99999999999999999999998754

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.85  E-value=3.6e-09  Score=74.05  Aligned_cols=55  Identities=18%  Similarity=0.356  Sum_probs=51.5

Q ss_pred             CccccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           63 SNTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        63 ~~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      +.++|+++++++.+++++.+|.+.|.+++++.+||+|++.+++|+|+++|+++..
T Consensus       247 cadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a  301 (382)
T COG3448         247 CADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHA  301 (382)
T ss_pred             HHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhcc
Confidence            4459999999999999999999999999999999999999999999999999843

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.82  E-value=1.9e-08  Score=60.12  Aligned_cols=48  Identities=17%  Similarity=0.406  Sum_probs=43.7

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVL  117 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~  117 (126)
                      .+.++.+++++.+|.+.|.+++.+.+||+|++ |+++|++|..|+.+.+
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~   50 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL   50 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe
Confidence            46889999999999999999999999999974 8999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.81  E-value=9.1e-09  Score=74.73  Aligned_cols=91  Identities=18%  Similarity=0.201  Sum_probs=74.4

Q ss_pred             ccCCCCceeeEeeCC--CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            4 YKKPNVERNSISLGN--GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~--~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      +.+++++.+||....  +++|+|+||.+|+..+. +.     ...+.+                +|++...+.+.+.++.
T Consensus       134 k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~-~~-----~~~~~~----------------vmt~~~~~~~~gi~l~  191 (503)
T KOG2550|consen  134 KEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLE-DN-----SLLVSD----------------VMTKNPVTGAQGITLK  191 (503)
T ss_pred             cccccccccccccCCcccceeEEEEehhhhhhhh-cc-----cchhhh----------------hcccccccccccccHH
Confidence            457899999999643  35899999999997661 11     123344                4555668889999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      ++-+++.+.+...+||||++++++-+++++|+.+.
T Consensus       192 ~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  192 EANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             HHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence            99999999999999999999999999999999875

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.80  E-value=3e-08  Score=50.53  Aligned_cols=47  Identities=30%  Similarity=0.475  Sum_probs=43.1

Q ss_pred             eEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        71 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      +.++.+++++.+++..|.+++.+.+||++++++++|+++..++.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            46789999999999999999999999999889999999999998764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.80  E-value=1.9e-08  Score=61.66  Aligned_cols=50  Identities=22%  Similarity=0.378  Sum_probs=46.0

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+.+
T Consensus        63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            66678889999999999999999999999999998899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.80  E-value=3.1e-08  Score=60.80  Aligned_cols=49  Identities=22%  Similarity=0.400  Sum_probs=45.3

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|++....
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~   50 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAK   50 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHh
Confidence            5688999999999999999999999999998999999999999997653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.79  E-value=4.1e-08  Score=62.00  Aligned_cols=50  Identities=28%  Similarity=0.410  Sum_probs=46.1

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|++|..|+++.+..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~   51 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT   51 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence            56889999999999999999999999999988999999999999987753

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.78  E-value=1.3e-08  Score=65.31  Aligned_cols=56  Identities=18%  Similarity=0.358  Sum_probs=51.8

Q ss_pred             ccccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           64 NTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        64 ~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      ..+|..|+++|.+++++.++...|.++++.++||++ +++++|-||-.+|.+...+.
T Consensus        68 ~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~-~~k~VGsItE~~iv~~~le~  123 (187)
T COG3620          68 KTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE-EDKVVGSITENDIVRALLEG  123 (187)
T ss_pred             hhhccCCeeEECchhhHHHHHHHHHHcCCccCceee-CCeeeeeecHHHHHHHHhcc
Confidence            458999999999999999999999999999999999 49999999999999987544

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.77  E-value=2.1e-08  Score=68.91  Aligned_cols=54  Identities=22%  Similarity=0.391  Sum_probs=50.8

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      .|+++++++.+++|+.++.+.|.+++++..||+|+ ++++|++|.+|+..++.+.
T Consensus       177 ~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g  230 (294)
T COG2524         177 LMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANG  230 (294)
T ss_pred             hccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcC
Confidence            78889999999999999999999999999999995 5999999999999998873

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.73  E-value=5.7e-08  Score=57.71  Aligned_cols=47  Identities=21%  Similarity=0.282  Sum_probs=43.5

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      ++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+...
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence            56789999999999999999999999999988999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.72  E-value=1.1e-07  Score=58.98  Aligned_cols=51  Identities=24%  Similarity=0.316  Sum_probs=46.2

Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      +++.++.+++++.++++.|.+++...+||+|++++++|+++..++++.+..
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~   52 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSS   52 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHH
Confidence            367889999999999999999999999999988999999999999976543

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.69  E-value=1e-07  Score=57.81  Aligned_cols=49  Identities=22%  Similarity=0.270  Sum_probs=45.3

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+++..|+++++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~   50 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLK   50 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhh
Confidence            4678999999999999999999999999998899999999999998765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.69  E-value=3.1e-08  Score=71.34  Aligned_cols=99  Identities=19%  Similarity=0.183  Sum_probs=78.0

Q ss_pred             CCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHH
Q 039385            6 KPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIG   85 (126)
Q Consensus         6 ~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~   85 (126)
                      ++-.+.+|+..++-..++|++..+|+..+..+.-    .....++++.              -.++.++++.+++.+-+.
T Consensus       230 ~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~----~~~k~d~~~~--------------a~epyFVPe~Tpl~~QL~  291 (423)
T COG4536         230 HSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN----EFTKEDILRA--------------ADEPYFVPEGTPLSDQLV  291 (423)
T ss_pred             hCCCCceeeecCChhHhhhhhhHHHHHHHhhccC----cccHhHHHHH--------------hcCCeecCCCCcHHHHHH
Confidence            4567889999887668999999999965422210    1123333321              136678999999999999


Q ss_pred             HHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385           86 KALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        86 ~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~  122 (126)
                      .|.+++-|.-.||||.|.+.|+||..||++.+-..+.
T Consensus       292 ~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdft  328 (423)
T COG4536         292 AFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFT  328 (423)
T ss_pred             HHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhcccc
Confidence            9999999999999999999999999999999887766

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.65  E-value=2.2e-07  Score=55.94  Aligned_cols=50  Identities=22%  Similarity=0.383  Sum_probs=45.4

Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      +++.++.++.++.++++.|.+++...+||+|++|+++|+++..++++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~   51 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA   51 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh
Confidence            36788999999999999999999999999998899999999999987654

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.64  E-value=1.7e-07  Score=57.69  Aligned_cols=49  Identities=18%  Similarity=0.316  Sum_probs=44.7

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~~  118 (126)
                      ++.++.+++++.++++.|.+++.+.+||+|++ |+++|+|+..|+++.+.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~   51 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLW   51 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHH
Confidence            56889999999999999998899999999987 89999999999998654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.64  E-value=2.3e-07  Score=55.89  Aligned_cols=50  Identities=26%  Similarity=0.389  Sum_probs=45.4

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++.++.++.++.++++.|.+.+.+.+||+|++++++|+++..|+++.+..
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~   51 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVAL   51 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhh
Confidence            56788999999999999999999999999988999999999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.63  E-value=2.5e-07  Score=55.81  Aligned_cols=50  Identities=24%  Similarity=0.373  Sum_probs=45.1

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++.++.++.++.++++.|.+.+...+||+|++|+++|+++..++++.+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~   51 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAA   51 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhc
Confidence            45789999999999999999999999999988999999999999887543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.62  E-value=3.2e-07  Score=55.81  Aligned_cols=49  Identities=22%  Similarity=0.276  Sum_probs=44.8

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      .+.++.+++++.+++..|.+++...+||+|++|+++|+++..|+++.+.
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~   50 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMG   50 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHh
Confidence            3578899999999999999999999999999999999999999998664

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.61  E-value=2.4e-07  Score=55.40  Aligned_cols=48  Identities=29%  Similarity=0.401  Sum_probs=43.8

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      ++.+++++.++.+++..|.+.+.+.+||+|++|+++|+++..|+++..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~   49 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS   49 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc
Confidence            567899999999999999999999999999889999999999998754

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.61  E-value=3.2e-07  Score=56.13  Aligned_cols=49  Identities=20%  Similarity=0.341  Sum_probs=45.2

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++.+++++.++++.|.+++...+||+|++++++|+|+..|+.+...
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~   50 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI   50 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence            5688999999999999999999999999998899999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.60  E-value=2.9e-07  Score=56.55  Aligned_cols=51  Identities=29%  Similarity=0.453  Sum_probs=46.0

Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      +++.++.++.++.++++.|.+.+.+.+||++++|+++|+|+..++++.+..
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~   52 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARP   52 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcc
Confidence            467889999999999999999999999999988999999999999876543

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.58  E-value=2e-07  Score=71.32  Aligned_cols=56  Identities=30%  Similarity=0.347  Sum_probs=51.6

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      ++|.+++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|+.+.+.+.
T Consensus        72 dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~  127 (546)
T PRK14869         72 DLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDI  127 (546)
T ss_pred             HhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhh
Confidence            47778999999999999999999999999999999889999999999999987653

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.58  E-value=2.5e-07  Score=57.94  Aligned_cols=49  Identities=27%  Similarity=0.422  Sum_probs=45.0

Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      +++.++.+++++.++++.|.+++.+.+||+|++++++|+++..|+++..
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~   50 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRA   50 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHh
Confidence            4678899999999999999999999999999889999999999998754

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.58  E-value=3.3e-07  Score=55.58  Aligned_cols=49  Identities=22%  Similarity=0.336  Sum_probs=43.5

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcC-CCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKH-VHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~-~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++++++++.++++.|.+++ ...+||+|++|+++|+|+..|+++...
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~   51 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT   51 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH
Confidence            5678999999999999997665 889999998899999999999998764

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.57  E-value=4.4e-07  Score=56.22  Aligned_cols=48  Identities=23%  Similarity=0.402  Sum_probs=44.2

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      ++.++.++.++.++++.|.+.+...+||+|++++++|++|..|+...+
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~   49 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFV   49 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence            567899999999999999999999999999889999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.55  E-value=4e-07  Score=54.90  Aligned_cols=50  Identities=30%  Similarity=0.443  Sum_probs=45.1

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++.++.+++++.++++.|.+.+...+||+|++++++|+++..|+.+.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~   51 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFD   51 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhc
Confidence            56789999999999999999999999999988999999999999876543

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.55  E-value=3.4e-07  Score=57.67  Aligned_cols=49  Identities=22%  Similarity=0.297  Sum_probs=45.1

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++++++++.+++..|.+++...+||+|++|+++|+++..|+++.+.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~   50 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEF   50 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhh
Confidence            4578999999999999999999999999998899999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.55  E-value=3e-07  Score=56.92  Aligned_cols=49  Identities=18%  Similarity=0.293  Sum_probs=44.9

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      .+.++++++++.+++..|.+++...+||+|++|+++|+++..|+++...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~   50 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLL   50 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhc
Confidence            4678999999999999999999999999998899999999999998763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.55  E-value=6e-07  Score=54.50  Aligned_cols=48  Identities=15%  Similarity=0.243  Sum_probs=44.1

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVL  117 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~  117 (126)
                      ++.++.+++++.++++.|.+++...+||+|++ ++++|+++..|+++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~   50 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKV   50 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHH
Confidence            56889999999999999998999999999987 8999999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.54  E-value=4e-07  Score=54.83  Aligned_cols=49  Identities=29%  Similarity=0.371  Sum_probs=44.4

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..++.+.+.
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~   50 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALA   50 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHH
Confidence            4678899999999999998888999999998899999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.54  E-value=5.4e-07  Score=54.73  Aligned_cols=49  Identities=22%  Similarity=0.395  Sum_probs=44.7

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+.+.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~   50 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE   50 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence            5578899999999999999999999999998899999999999998654

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.53  E-value=4e-07  Score=55.02  Aligned_cols=49  Identities=27%  Similarity=0.328  Sum_probs=44.5

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++.++.++.++++.|.+++...+||+|++++++|+++..++++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~   50 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLL   50 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhh
Confidence            5678999999999999999888899999998899999999999998654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.52  E-value=7.3e-07  Score=53.67  Aligned_cols=51  Identities=22%  Similarity=0.388  Sum_probs=46.1

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHHHHh
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~~~~  120 (126)
                      ++.+++++.++.++++.|.+.+...+||++++ |+++|+++..++++...+.
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~   53 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG   53 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcC
Confidence            56889999999999999999999999999987 9999999999999877543

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.52  E-value=4.6e-07  Score=55.50  Aligned_cols=49  Identities=20%  Similarity=0.326  Sum_probs=45.0

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++.+++++.+++..|.+.+.+.+||++++|+++|+++..++++.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~   50 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAAL   50 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhc
Confidence            5678999999999999999999999999998899999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.51  E-value=2e-07  Score=68.40  Aligned_cols=108  Identities=14%  Similarity=0.128  Sum_probs=77.1

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      ..++++..+||.|.+.+.+.+++|.+-+..........   .+...++..-.....+.     ....+..+..++++.+|
T Consensus       180 l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~---~~~~~~l~~s~~dl~ig-----~~~~i~~i~~~~~v~~a  251 (381)
T KOG1764|consen  180 LIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRL---LPLPSLLSKSLSDLGIG-----TWSNIASISEDTPVIEA  251 (381)
T ss_pred             HHhCCccceeeecccccceeeehhHHHHHHHHHHhhcc---cccHHHhhCCHHHhCcc-----hhhhheeecCCCcHHHH
Confidence            35788999999995555999999999986542221110   11122222211111111     12258899999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      +++|..+++..+||+|.+|+.+|++++.|+.....+
T Consensus       252 l~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~  287 (381)
T KOG1764|consen  252 LKIMSERRISALPVVDENGKKVGNYSRFDVIHLARE  287 (381)
T ss_pred             HHHHHhcCcCcceEEcCCCceecceehhhhhhhhhc
Confidence            999999999999999999999999999999887654

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.51  E-value=4.2e-07  Score=56.70  Aligned_cols=50  Identities=32%  Similarity=0.475  Sum_probs=45.6

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++.++.+++++.++++.|.+.+...+||+|++++++|+++..++++.+..
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~   51 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYK   51 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhc
Confidence            56789999999999999998899999999988999999999999987754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.50  E-value=5.2e-07  Score=55.49  Aligned_cols=50  Identities=24%  Similarity=0.422  Sum_probs=44.9

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~~~  119 (126)
                      ++.++.++.++.+++.+|.+.+...+||+|++ |+++|+|+..|+++.+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~   52 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGG   52 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhc
Confidence            56788999999999999999999999999987 999999999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.49  E-value=1e-06  Score=52.42  Aligned_cols=52  Identities=25%  Similarity=0.395  Sum_probs=46.5

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~  121 (126)
                      ++.++.+++++.++++.|.+.+...+||++++++++|+++..++++......
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~   53 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG   53 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhcc
Confidence            4577899999999999999999999999998899999999999998876543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.49  E-value=4.1e-07  Score=54.72  Aligned_cols=47  Identities=15%  Similarity=0.119  Sum_probs=43.4

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      ++.++.+++++.+++..|.+.+.+.+||+|++|+++|+++..+++..
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~   49 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK   49 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc
Confidence            67889999999999999999988999999988999999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.49  E-value=8.6e-07  Score=53.68  Aligned_cols=47  Identities=28%  Similarity=0.470  Sum_probs=43.0

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+|+..|+.+.
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~   48 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEI   48 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhh
Confidence            35788999999999999998999999999988999999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.48  E-value=7.9e-07  Score=55.06  Aligned_cols=46  Identities=17%  Similarity=0.389  Sum_probs=42.6

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~   47 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG   47 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence            4578999999999999999899999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.48  E-value=5.7e-07  Score=55.08  Aligned_cols=47  Identities=32%  Similarity=0.497  Sum_probs=43.6

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      ++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~   48 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA   48 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence            56889999999999999998999999999988999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.47  E-value=1e-06  Score=53.09  Aligned_cols=49  Identities=22%  Similarity=0.378  Sum_probs=44.6

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.+++++.++.++++.|.+.+.+.+||+|++|+++|+++..|++....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~   50 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDL   50 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHh
Confidence            5678999999999999999999999999998899999999999987654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.47  E-value=5.6e-07  Score=64.71  Aligned_cols=54  Identities=15%  Similarity=0.212  Sum_probs=48.2

Q ss_pred             ccccc--ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           65 TTQQR--ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        65 ~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++|.+  ++.++.+++|+.+|++.|.+++...+||+|++|+++|+||..|+.+.+.
T Consensus       206 dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~  261 (326)
T PRK10892        206 DIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFD  261 (326)
T ss_pred             HHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHh
Confidence            47776  8999999999999999999888888888998999999999999987654

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.46  E-value=1.2e-06  Score=52.81  Aligned_cols=48  Identities=15%  Similarity=0.292  Sum_probs=43.8

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      ++.++.+++++.++++.|.+.+...+||+|++++++|+++..|+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~   49 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYA   49 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhh
Confidence            457889999999999999999999999999889999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.46  E-value=1.3e-06  Score=52.31  Aligned_cols=48  Identities=33%  Similarity=0.425  Sum_probs=44.0

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      ++.++.++.++.+++..|.+.+...+||+|++++++|+++..|+++..
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~   50 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY   50 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh
Confidence            567889999999999999999999999999889999999999998765

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.46  E-value=9.6e-07  Score=52.89  Aligned_cols=49  Identities=20%  Similarity=0.335  Sum_probs=44.7

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++.++.+++++.+++..|.+++.+.+||+|+ ++++|+++..|+.+.+.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~   50 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIE   50 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhc
Confidence            5678999999999999999999999999997 999999999999998654

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.46  E-value=1.2e-06  Score=52.56  Aligned_cols=48  Identities=31%  Similarity=0.448  Sum_probs=43.8

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++.+++++.++++.|.+++...+||+++ ++++|+++..|+++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~   49 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIA   49 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHh
Confidence            5678999999999999999999999999997 99999999999998654

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.46  E-value=5.9e-07  Score=64.38  Aligned_cols=54  Identities=17%  Similarity=0.190  Sum_probs=48.9

Q ss_pred             cccccc--eEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           65 TTQQRE--LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        65 ~~m~~~--~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++|.++  +.++++++++.+|++.|.+.+...+||+|++|+++|+|+..|+.+.+.
T Consensus       201 ~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~  256 (321)
T PRK11543        201 HLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLV  256 (321)
T ss_pred             HHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHh
Confidence            367777  999999999999999999898999999999999999999999987654

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.45  E-value=1.7e-07  Score=63.88  Aligned_cols=99  Identities=16%  Similarity=0.169  Sum_probs=79.3

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      +.++..+.+||+.++...+.|++-.+||..+.....   ..+.+.++.                 +|...|++.-.+...
T Consensus        95 iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~---~~F~i~~lL-----------------RPav~VPESKrvd~l  154 (293)
T COG4535          95 IIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA---EPFDIKELL-----------------RPAVVVPESKRVDRL  154 (293)
T ss_pred             HHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc---ccccHHHhc-----------------ccceecccchhHHHH
Confidence            345678999999888778999999999965422211   112344432                 577889999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~  122 (126)
                      ++-+..++.|...|+|+.|.+-|.||..|++..+...+-
T Consensus       155 LkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIE  193 (293)
T COG4535         155 LKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIE  193 (293)
T ss_pred             HHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccc
Confidence            999999999999999999999999999999999876654

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.43  E-value=1.8e-06  Score=52.87  Aligned_cols=48  Identities=25%  Similarity=0.417  Sum_probs=43.5

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++.++.++.++++.|.+.++..+||+|+ |+++|+++..++.+.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~   49 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAIS   49 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHH
Confidence            5678999999999999999999999999996 99999999999987654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.42  E-value=1.1e-06  Score=55.73  Aligned_cols=49  Identities=27%  Similarity=0.441  Sum_probs=44.7

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++.++++++++.++++.|.+.+...+||+|+ ++++|+++..++++.+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~   50 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVT   50 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHh
Confidence            5678999999999999999999999999997 999999999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.41  E-value=1.3e-06  Score=53.14  Aligned_cols=48  Identities=25%  Similarity=0.304  Sum_probs=43.8

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++.++.++.++++.|.+.+...+||+|+ |+++|+++..++++...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~   49 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASP   49 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhh
Confidence            4578999999999999999999999999997 99999999999998764

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.41  E-value=1.5e-06  Score=52.21  Aligned_cols=49  Identities=31%  Similarity=0.426  Sum_probs=44.2

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++.++.+++++.++++.|.+.+...+||+|+ ++++|+++..|+++....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~   50 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAE   50 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhc
Confidence            5678999999999999999888999999997 999999999999876644

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.40  E-value=1.6e-06  Score=52.95  Aligned_cols=49  Identities=18%  Similarity=0.300  Sum_probs=44.2

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++++++++.+|+..|.+.+...+||+|++++++|+++..++.+...
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~   50 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASP   50 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhh
Confidence            5678999999999999999899999999998899999999999987653

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.40  E-value=2.1e-06  Score=51.95  Aligned_cols=48  Identities=29%  Similarity=0.331  Sum_probs=43.7

Q ss_pred             eEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        71 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      +.++.+++++.+++..|.+.+...+||+|++|+++|+++..|+++.+.
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~   51 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALL   51 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHh
Confidence            477899999999999999899999999998899999999999987654

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.38  E-value=2.4e-06  Score=51.36  Aligned_cols=49  Identities=20%  Similarity=0.245  Sum_probs=44.2

Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      +++.++.++.++.++++.|.+++...+||+|+ |+++|+++..|+.+.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~   50 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALR   50 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHh
Confidence            36788999999999999999888999999997 99999999999987663

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.38  E-value=2.4e-06  Score=51.37  Aligned_cols=47  Identities=26%  Similarity=0.381  Sum_probs=42.7

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      ++.+++++.++.++++.|.+.+.+.+||+|+ ++++|+++..+++..+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~   48 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRV   48 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHH
Confidence            5678999999999999999888999999996 9999999999998754

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.37  E-value=1.8e-06  Score=61.35  Aligned_cols=71  Identities=13%  Similarity=0.223  Sum_probs=56.8

Q ss_pred             HHHHHHHHhcCCCCCCCcccccc--ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHHH
Q 039385           47 ALEFTQQVLTSPLFSESNTTQQR--ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~~  118 (126)
                      -.+.+..+.......+.+ +|++  ++.++.+++++.++++.+.+++..++||++++ ++++|+|+..|++..+.
T Consensus        54 e~~~i~~vl~l~~~~V~d-iMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~  127 (292)
T PRK15094         54 TRDMLEGVMDIADQRVRD-IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR  127 (292)
T ss_pred             HHHHHHHHhccCCCEEeE-EccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh
Confidence            344555555555555544 7775  69999999999999999999999999999876 69999999999997553

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.36  E-value=1.7e-06  Score=64.73  Aligned_cols=53  Identities=17%  Similarity=0.192  Sum_probs=48.9

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      +|.+++.++.+++++.++++.|.+++...+||+|++++++|+|+..|+++.+.
T Consensus       340 im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~  392 (454)
T TIGR01137       340 LHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALF  392 (454)
T ss_pred             hCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence            67788999999999999999999999999999998899999999999998654

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.35  E-value=2.4e-06  Score=52.17  Aligned_cols=48  Identities=25%  Similarity=0.379  Sum_probs=43.6

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++.+++++.+++..|.+.+.+.+||+|+ |+++|+++..++.+.+.
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~   49 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALR   49 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhh
Confidence            5678999999999999999999999999996 99999999999988654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=98.35  E-value=2.4e-06  Score=63.40  Aligned_cols=71  Identities=14%  Similarity=0.277  Sum_probs=57.0

Q ss_pred             HHHHHHHHhcCCCCCCCcccccc--ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHHH
Q 039385           47 ALEFTQQVLTSPLFSESNTTQQR--ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~~  118 (126)
                      -.+.++.........+++ +|++  ++.+++.++++.++++.+.+++..++||.+++ ++++|+|+..|++..+.
T Consensus       178 E~~~i~~vl~l~~~~v~d-iMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~  251 (408)
T TIGR03520       178 EQKILQGIVSFGNTDTKQ-VMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN  251 (408)
T ss_pred             HHHHHHHHhccCCCEeee-eCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc
Confidence            344555555555555554 7774  78999999999999999999999999999864 59999999999997543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.35  E-value=3.4e-06  Score=50.80  Aligned_cols=47  Identities=21%  Similarity=0.229  Sum_probs=42.3

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      ++.++.+++++.++++.|.+++.+.+||+++ ++++|+|+..|++..+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~   48 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRV   48 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHH
Confidence            5678999999999999999889999999996 9999999999998543

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.34  E-value=2.1e-06  Score=51.79  Aligned_cols=50  Identities=24%  Similarity=0.287  Sum_probs=44.5

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++.+++++.++.++++.|.+.+...+||+|++|+++|+++..++.+.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~   52 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEK   52 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhc
Confidence            45678999999999999988888999999988999999999999987654

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.34  E-value=3.2e-06  Score=50.70  Aligned_cols=48  Identities=31%  Similarity=0.583  Sum_probs=43.4

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++.++.++.++++.|.+.+.+.+||+++ ++++|+++..|+++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~   49 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLA   49 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHh
Confidence            4578899999999999999888999999996 99999999999998764

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.34  E-value=3.8e-06  Score=50.57  Aligned_cols=48  Identities=17%  Similarity=0.219  Sum_probs=43.1

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++.++.++.++++.|.+++...+||+|+ ++++|+++..++++...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~   49 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVL   49 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHH
Confidence            4577899999999999999899999999997 89999999999998754

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.33  E-value=1.5e-06  Score=60.75  Aligned_cols=54  Identities=19%  Similarity=0.217  Sum_probs=49.0

Q ss_pred             cccccc-eEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           65 TTQQRE-LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        65 ~~m~~~-~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++|.++ +.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+.+.
T Consensus       159 ~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~  213 (268)
T TIGR00393       159 DLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL  213 (268)
T ss_pred             HHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence            477777 899999999999999999999999999998899999999999988653

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.32  E-value=2.6e-06  Score=51.84  Aligned_cols=48  Identities=19%  Similarity=0.277  Sum_probs=42.6

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcC-CCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKH-VHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~-~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++.+++++.++++.|...+ .+.+||+|+ |+++|+++..++++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~   50 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLS   50 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHh
Confidence            5567899999999999998776 889999998 99999999999987654

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.31  E-value=3.1e-06  Score=50.97  Aligned_cols=45  Identities=20%  Similarity=0.295  Sum_probs=41.4

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++.++.+++++.++++.|.+++.+.+||+|+ |+++|+++..+++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~   46 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVV   46 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHH
Confidence            5678999999999999999999999999997 99999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.28  E-value=5.1e-06  Score=62.71  Aligned_cols=50  Identities=18%  Similarity=0.163  Sum_probs=46.7

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      .|.+++.++.+++++.++++.|.++++..+||+|++++++|+||..|+..
T Consensus        94 iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~  143 (479)
T PRK07807         94 LVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAG  143 (479)
T ss_pred             ccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhc
Confidence            67889999999999999999999999999999999999999999999853

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.26  E-value=4.4e-06  Score=49.63  Aligned_cols=46  Identities=15%  Similarity=0.206  Sum_probs=41.7

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      ++.++.+++++.++++.|.+++...+||+| +++++|+++..++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~   47 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRA   47 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcc
Confidence            567899999999999999989999999998 6999999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.26  E-value=7e-06  Score=49.39  Aligned_cols=47  Identities=19%  Similarity=0.393  Sum_probs=42.5

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      ++.++++++++.++++.|.+.+.+.+||+|+ ++++|+++..|+++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~   48 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKV   48 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            5577899999999999999889999999995 5999999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.24  E-value=3.7e-06  Score=50.34  Aligned_cols=46  Identities=22%  Similarity=0.282  Sum_probs=42.0

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      ++.++.+++++.+++..|.+.+...+||+|++|+++|+++..+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~   48 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRF   48 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeee
Confidence            5678999999999999999899999999998899999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.24  E-value=5.7e-06  Score=62.67  Aligned_cols=50  Identities=22%  Similarity=0.253  Sum_probs=46.8

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      .|..++.++.+++++.++++.|.+++...+||+|++++++|+|+..|+..
T Consensus        92 im~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~  141 (486)
T PRK05567         92 GVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF  141 (486)
T ss_pred             cccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh
Confidence            66779999999999999999999999999999999999999999999864

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.24  E-value=7.5e-06  Score=61.46  Aligned_cols=51  Identities=18%  Similarity=0.244  Sum_probs=46.5

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC---CceEEEEeHHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ---RLLLGLVSLTDMIRV  116 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~---~~lvGivs~~dil~~  116 (126)
                      .|.+++.++.++.++.++++.|.++++..+||+|++   ++++|+|+..|++..
T Consensus        85 ~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~  138 (450)
T TIGR01302        85 GIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV  138 (450)
T ss_pred             ceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhh
Confidence            566788999999999999999999999999999987   799999999999753

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.24  E-value=3.2e-06  Score=65.15  Aligned_cols=52  Identities=21%  Similarity=0.239  Sum_probs=48.0

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      +|++++.++++++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+.+
T Consensus       452 im~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l  503 (574)
T PRK01862        452 LIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDL  503 (574)
T ss_pred             HhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHh
Confidence            6677888999999999999999999999999999999999999999998854

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.21  E-value=8e-06  Score=48.75  Aligned_cols=44  Identities=20%  Similarity=0.203  Sum_probs=40.8

Q ss_pred             EEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           72 LTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        72 ~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      +++.++.++.+++..|.+.+...+||+|+ ++++|+++..++++.
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~   47 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA   47 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh
Confidence            67899999999999999999999999997 999999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.19  E-value=7.5e-06  Score=49.64  Aligned_cols=46  Identities=20%  Similarity=0.201  Sum_probs=41.6

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC---CCceEEEEeHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ---QRLLLGLVSLTDMIR  115 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~~~lvGivs~~dil~  115 (126)
                      ++.++.+++++.++++.|.+.+...+||+|+   +|+++|+++..|++.
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~   51 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF   51 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh
Confidence            5578899999999999999888899999997   689999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.18  E-value=1.2e-05  Score=60.39  Aligned_cols=66  Identities=15%  Similarity=0.222  Sum_probs=54.1

Q ss_pred             HHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHHHHHh-----cCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           49 EFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKALT-----KHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~~m~~-----~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +.++.+.+++..++++ +|++++.++++++++.++++.|.+     ++...+||+|++++++|+|+.+|++.
T Consensus       120 ~~i~~ll~~~e~tvg~-iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~  190 (449)
T TIGR00400       120 KAINLLLSYSDDSAGR-IMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLIL  190 (449)
T ss_pred             HHHHHHhCCCcchHHH-hCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhc
Confidence            3455566666655554 888899999999999999999975     45678999998999999999999875

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.17  E-value=4.6e-06  Score=50.13  Aligned_cols=42  Identities=29%  Similarity=0.439  Sum_probs=37.0

Q ss_pred             EeCCCCHHHHHHHHHhcC-----CCEEEEEcCCCceEEEEeHHHHHH
Q 039385           74 CQVDSPLSEVIGKALTKH-----VHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        74 v~~~~~l~~~~~~m~~~~-----~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +.+++++.++++.|.+++     ...+||+|++++++|+++..++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~   48 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLL   48 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhc
Confidence            578999999999998776     478999998899999999999875

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.17  E-value=1.5e-05  Score=48.20  Aligned_cols=53  Identities=23%  Similarity=0.387  Sum_probs=47.5

Q ss_pred             cccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           67 QQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        67 m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      |.+++.++.++.++.+|...|.++++..+||++ .++++|++|..|+++.+...
T Consensus         5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~-~~~l~Giit~~di~~~~~~~   57 (117)
T COG0517           5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRALAAG   57 (117)
T ss_pred             ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHhcc
Confidence            346789999999999999999999999999998 45899999999999998654

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.17  E-value=1e-05  Score=60.57  Aligned_cols=73  Identities=25%  Similarity=0.381  Sum_probs=58.1

Q ss_pred             HHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHHHHH-----hcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385           49 EFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKAL-----TKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~~m~-----~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~  122 (126)
                      ...+...+++...+++ .|+.+++++.+++|+.+++..+.     ...++.++|+|++++++|++|.++++..-....+
T Consensus       121 ~~v~~~l~y~e~taG~-~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~~~~i  198 (451)
T COG2239         121 ARVRQLLSYPEDTAGR-IMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEPDELL  198 (451)
T ss_pred             HHHHHhcCCChhhhhc-cceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCcHhHH
Confidence            3344455566666655 89999999999999999999996     3567899999999999999999999965444443

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.16  E-value=1.3e-05  Score=48.51  Aligned_cols=48  Identities=27%  Similarity=0.418  Sum_probs=40.8

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcC-CCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKH-VHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~-~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.++.++.++.++++.|.+++ ...+||+| +|+++|+++..|+++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~   50 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTA   50 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHh
Confidence            4577899999999999998887 56777777 689999999999998654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.14  E-value=1.9e-05  Score=47.46  Aligned_cols=48  Identities=17%  Similarity=0.389  Sum_probs=41.3

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      .+.++.+++++.++++.|.+++...++|.+ +|+++|+++..|+++.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~   49 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMA   49 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHH
Confidence            457789999999999999888877777776 599999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.12  E-value=1.7e-05  Score=60.29  Aligned_cols=49  Identities=18%  Similarity=0.115  Sum_probs=44.8

Q ss_pred             cccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC---CCceEEEEeHHHHHH
Q 039385           67 QQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ---QRLLLGLVSLTDMIR  115 (126)
Q Consensus        67 m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~~~lvGivs~~dil~  115 (126)
                      |.+++.++.+++++.++++.|.++++..+||+|+   +++++|+||..|+..
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~  157 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDF  157 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhh
Confidence            5678999999999999999999999999999996   479999999999854

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.11  E-value=1.5e-05  Score=47.44  Aligned_cols=46  Identities=26%  Similarity=0.372  Sum_probs=41.4

Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +++.+++.+.++.+++..|.+.+...+||+|+ ++++|+++..|++.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~   47 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLG   47 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            36688999999999999998888889999996 99999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.10  E-value=2.2e-05  Score=46.86  Aligned_cols=47  Identities=19%  Similarity=0.285  Sum_probs=41.9

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      +..++.++.++.+++..|.+.+...+||++++++++|+++..+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~   48 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN   48 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc
Confidence            45778999999999999998888999999988999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.10  E-value=2.1e-05  Score=59.75  Aligned_cols=49  Identities=14%  Similarity=0.153  Sum_probs=44.4

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC---CceEEEEeHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ---RLLLGLVSLTDMI  114 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~---~~lvGivs~~dil  114 (126)
                      .|..+++++.+++++.++++.|.++++..+||+|++   ++++|+|+..|+.
T Consensus       101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~  152 (495)
T PTZ00314        101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID  152 (495)
T ss_pred             ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh
Confidence            455688999999999999999999999999999963   7999999999985

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.10  E-value=1.6e-05  Score=47.72  Aligned_cols=49  Identities=14%  Similarity=0.154  Sum_probs=43.3

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC---CCceEEEEeHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ---QRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~~~lvGivs~~dil~~~~  118 (126)
                      ....+.++.++.++.+.+.+.+...+||+|+   +|+++|+|+..|+.+...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~   54 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK   54 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH
Confidence            3467899999999999999888889999997   689999999999987664

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.01  E-value=1.4e-05  Score=61.23  Aligned_cols=114  Identities=17%  Similarity=0.246  Sum_probs=73.3

Q ss_pred             ccCCCCceeeEeeCC-CceeEEEeeccccc-cCcHHH-HHhhhhhcHHHHHHHHhcCCC-CCC---CccccccceEEEeC
Q 039385            4 YKKPNVERNSISLGN-GWRLIGTFSASDLR-GCHYAV-LQTWLPLTALEFTQQVLTSPL-FSE---SNTTQQRELLTCQV   76 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~-~~~l~G~is~~dl~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~m~~~~~~v~~   76 (126)
                      +++..++.+||+-++ .++++|++..+|+. .+...+ ..+....+-..+......... .+.   ...+|...++++..
T Consensus       575 ~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d  654 (696)
T KOG0475|consen  575 MEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPSRLDLKDILDMTPFTVTD  654 (696)
T ss_pred             HhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCCCcCceeeccCCcccccc
Confidence            345667788877554 45899999999994 332111 000000000011100000000 011   12377788999999


Q ss_pred             CCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           77 DSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        77 ~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      .+|.+.+++++.+-+..++.|.. +|++.|+||..|+++..+
T Consensus       655 ~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~~r  695 (696)
T KOG0475|consen  655 LTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRHTR  695 (696)
T ss_pred             cCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHhhc
Confidence            99999999999999999998776 899999999999998754

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.01  E-value=1.3e-05  Score=60.81  Aligned_cols=54  Identities=19%  Similarity=0.248  Sum_probs=50.4

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      .+..|+++|++.+|+.+|+.+|.+.++..+.+++.++...||||..|+...+..
T Consensus       154 ~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~  207 (610)
T COG2905         154 VKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIA  207 (610)
T ss_pred             HhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHh
Confidence            677899999999999999999999999999999999999999999999988754

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.90  E-value=6.7e-05  Score=56.73  Aligned_cols=48  Identities=15%  Similarity=0.146  Sum_probs=43.6

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMI  114 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil  114 (126)
                      .|.++++++.+++++.++++.|.+++...+||+| +++++|+||..|+.
T Consensus        93 im~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~  140 (475)
T TIGR01303        93 LVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLL  140 (475)
T ss_pred             ccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhh
Confidence            5677889999999999999999999999999998 57999999999975

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.86  E-value=8.5e-06  Score=62.41  Aligned_cols=112  Identities=15%  Similarity=0.056  Sum_probs=74.9

Q ss_pred             cCCCCceeeEeeCCCc----eeEEEeeccccccCcH-H----H------HHhhhhhcHHHHHHHHhcCCCCCC-------
Q 039385            5 KKPNVERNSISLGNGW----RLIGTFSASDLRGCHY-A----V------LQTWLPLTALEFTQQVLTSPLFSE-------   62 (126)
Q Consensus         5 ~~~~~~~~pVvd~~~~----~l~G~is~~dl~~~~~-~----~------~~~~~~~~~~~~~~~~~~~~~~~~-------   62 (126)
                      +..+..++||+|+..+    ++.|+|=.+.+..+.. .    +      .......+..++..+..+.+....       
T Consensus       609 k~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~  688 (762)
T KOG0474|consen  609 KSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEM  688 (762)
T ss_pred             HhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhh
Confidence            4567889999997642    6888887777732210 0    0      000012222333332111111111       


Q ss_pred             ---CccccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           63 ---SNTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        63 ---~~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                         -.-.|.+.+.++.+++++..+..++..-+.+++.|++..++.+|++|++|+...
T Consensus       689 yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~  745 (762)
T KOG0474|consen  689 YVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARY  745 (762)
T ss_pred             ccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence               012677788999999999999999999999999999988999999999999854

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.71  E-value=8.8e-05  Score=56.47  Aligned_cols=45  Identities=22%  Similarity=0.199  Sum_probs=41.2

Q ss_pred             eEEEeCCCCHHHHHHHHHhcCCCEEEEEcC---CCceEEEEeHHHHHH
Q 039385           71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQ---QRLLLGLVSLTDMIR  115 (126)
Q Consensus        71 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~~~lvGivs~~dil~  115 (126)
                      +.++.+++++.+|+..|.+++...+||+|+   +++++|+||..|+..
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~  154 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRI  154 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhc
Confidence            368999999999999999999999999996   589999999999863

>PF00571 CBS: CBS domain CBS domain web page

Probab=97.60  E-value=2.4e-05  Score=41.73  Aligned_cols=30  Identities=30%  Similarity=0.455  Sum_probs=26.6

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeecccccc
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRG   33 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~   33 (126)
                      .|.+++++.+||+|+++ +++|++|.+|+..
T Consensus        24 ~~~~~~~~~~~V~d~~~-~~~G~is~~dl~~   53 (57)
T PF00571_consen   24 IMRKNGISRLPVVDEDG-KLVGIISRSDLLK   53 (57)
T ss_dssp             HHHHHTSSEEEEESTTS-BEEEEEEHHHHHH
T ss_pred             HHHHcCCcEEEEEecCC-EEEEEEEHHHHHh
Confidence            46788999999999987 9999999999953

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK11573 hypothetical protein; Provisional

Probab=97.55  E-value=0.00043  Score=51.63  Aligned_cols=91  Identities=9%  Similarity=0.143  Sum_probs=64.2

Q ss_pred             EeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccc--cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-
Q 039385           25 TFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQ--RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-  101 (126)
Q Consensus        25 ~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-  101 (126)
                      .+|.++++.+...... .....-.+.++.+......++.+ +|+  .++.+++.+.++.++++.+.+++..++||.+++ 
T Consensus       153 ~~s~eEl~~lv~~~~~-~l~~~e~~mi~~vl~l~~~~v~e-iMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~  230 (413)
T PRK11573        153 ALSKEELRTIVHESRS-QISRRNQDMLLSVLDLEKVTVDD-IMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSL  230 (413)
T ss_pred             CCCHHHHHHHHHHHhh-hcCHHHHHHHHHHhccCCCChhh-cCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCC
Confidence            3566666544222111 12223445555555555555554 554  478999999999999999999999999998753 


Q ss_pred             CceEEEEeHHHHHHHH
Q 039385          102 RLLLGLVSLTDMIRVL  117 (126)
Q Consensus       102 ~~lvGivs~~dil~~~  117 (126)
                      ..++|++...|++...
T Consensus       231 D~IiGiv~~kDll~~~  246 (413)
T PRK11573        231 DDAISMLRVREAYRLM  246 (413)
T ss_pred             CceEEEEEHHHHHHHh
Confidence            6999999999999754

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.48  E-value=0.00039  Score=49.98  Aligned_cols=50  Identities=28%  Similarity=0.487  Sum_probs=42.8

Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      .++.++.+++++.+.+....+. ...++|+|++++++|++++..++.++..
T Consensus       335 ~~~~~v~~d~~~~~~~~~~~~~-~~p~aVvde~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         335 DDVLTVDADTPLSEILARIRQA-PCPVAVVDEDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             ccccccCccchHHHHHHHHhcC-CCceeEEcCCCcEEEEecHHHHHHHHhc
Confidence            4678899999999998877644 4568899999999999999999998864

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.29  E-value=0.00073  Score=49.90  Aligned_cols=48  Identities=10%  Similarity=0.206  Sum_probs=41.3

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      +..++.+++++.+++..+.+.. .-++|+|+ |+++|+|++.+++..+..
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~-~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       334 APTVINPDTLMRDVLAARHRTG-GAILLVEN-GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             cCcccCCCCcHHHHHHHHhcCC-CCeEEeeC-CeEEEEEeHHHHHHHHhc
Confidence            5678999999999999887655 55889985 999999999999998864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=97.21  E-value=0.0034  Score=47.04  Aligned_cols=72  Identities=19%  Similarity=0.283  Sum_probs=57.1

Q ss_pred             HHHHHHHhcCCCCCCCccccc--cceEEEeCCCCHHHHHHHHHhcCCCEEEEEc-CCCceEEEEeHHHHHHHHHHh
Q 039385           48 LEFTQQVLTSPLFSESNTTQQ--RELLTCQVDSPLSEVIGKALTKHVHRVWVVD-QQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~~~~lvGivs~~dil~~~~~~  120 (126)
                      ...++.+......++.+ +|+  .++.++..+.++.++.+.+.+++..++||.+ +.+.++|++...|++......
T Consensus       194 ~~mi~~v~~l~~~~v~e-iMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~  268 (429)
T COG1253         194 REMINNVLDLDDRTVRE-IMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG  268 (429)
T ss_pred             HHHHHHHhccCCcEeee-EeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence            34445555555555544 554  5789999999999999999999999999998 556999999999999987655

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=97.11  E-value=0.00052  Score=49.74  Aligned_cols=55  Identities=11%  Similarity=0.154  Sum_probs=48.1

Q ss_pred             ccc--cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           66 TQQ--RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        66 ~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      +|.  ...-++.+++++.+-.++-.+.+..+.||+|...+++|+||..|++......
T Consensus       193 i~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~~t  249 (432)
T COG4109         193 IMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKPST  249 (432)
T ss_pred             hccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCCCc
Confidence            555  5677889999999999999999999999999999999999999998765443

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=96.19  E-value=0.044  Score=40.86  Aligned_cols=44  Identities=11%  Similarity=0.118  Sum_probs=39.5

Q ss_pred             EeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           74 CQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        74 v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      ..++.+..+++..|..++...++|+|+++++.|+++..++.+..
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  333 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTAL  333 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhh
Confidence            44677899999999999999999999999999999999997654

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=96.09  E-value=0.0029  Score=31.31  Aligned_cols=29  Identities=21%  Similarity=0.422  Sum_probs=24.7

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccc
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLR   32 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~   32 (126)
                      .|.++++..+||+++++ +++|+++..++.
T Consensus        17 ~~~~~~~~~~~v~~~~~-~~~g~i~~~~l~   45 (49)
T smart00116       17 LLREHGIRRLPVVDEEG-RLVGIVTRRDII   45 (49)
T ss_pred             HHHHhCCCcccEECCCC-eEEEEEEHHHHH
Confidence            35667889999999877 999999998884

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.94  E-value=0.019  Score=40.44  Aligned_cols=39  Identities=21%  Similarity=0.200  Sum_probs=33.4

Q ss_pred             CCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           78 SPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        78 ~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      ....+++..+...+...+||+|++|+++|.||+.+++..
T Consensus       270 ~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         270 FVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             hhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence            344557788888999999999999999999999999764

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=95.76  E-value=0.008  Score=41.56  Aligned_cols=53  Identities=15%  Similarity=0.354  Sum_probs=46.6

Q ss_pred             ccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCC-ceEEEEeHHHHHHHHHHh
Q 039385           68 QRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQR-LLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        68 ~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~-~lvGivs~~dil~~~~~~  120 (126)
                      +...+++..+.++.+++..+.+....+.||+.++. .+.|++-..|+++.+...
T Consensus        76 RSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~  129 (293)
T COG4535          76 RSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSD  129 (293)
T ss_pred             HHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCC
Confidence            45678999999999999999999999999997544 899999999999987654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=94.82  E-value=0.18  Score=37.23  Aligned_cols=48  Identities=21%  Similarity=0.297  Sum_probs=41.8

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      ......++.+..+++..|...+...++|+|+++++.|.++..++...+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  298 (363)
T TIGR01186       251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQAR  298 (363)
T ss_pred             cceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHh
Confidence            334567788999999999999999999999999999999999987654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=93.96  E-value=0.12  Score=41.38  Aligned_cols=58  Identities=17%  Similarity=0.163  Sum_probs=50.5

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC--CCceEEEEeHHHHHHHHHHhhh
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ--QRLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--~~~lvGivs~~dil~~~~~~~~  122 (126)
                      .+|-+++.++..+++..|.-+.+..+..+.+|+||.  +.-++|.|+++.+...+..++.
T Consensus       592 ~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig  651 (931)
T KOG0476|consen  592 HIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIG  651 (931)
T ss_pred             eeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcC
Confidence            488899999999999999988887777999999985  3489999999999999877654

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=93.51  E-value=0.063  Score=39.56  Aligned_cols=54  Identities=19%  Similarity=0.429  Sum_probs=46.8

Q ss_pred             ccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC-CCceEEEEeHHHHHHHHHHhh
Q 039385           68 QRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ-QRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        68 ~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~~~lvGivs~~dil~~~~~~~  121 (126)
                      +.++..+..+++.+++++.+......++|+-.+ -...+||+..+|+++++.+.-
T Consensus       209 R~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~  263 (423)
T COG4536         209 RNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN  263 (423)
T ss_pred             ccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccC
Confidence            357889999999999999999999999999743 337999999999999987654

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=92.51  E-value=0.11  Score=38.82  Aligned_cols=47  Identities=13%  Similarity=0.175  Sum_probs=40.4

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC---CCceEEEEeHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ---QRLLLGLVSLTDMIRV  116 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~~~lvGivs~~dil~~  116 (126)
                      +++...|+.++.++++....+++..+||.+.   ..+++|+||-+|+-..
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~  166 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL  166 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh
Confidence            5677899999999999999999999999963   2499999999997544

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=90.59  E-value=0.24  Score=38.98  Aligned_cols=59  Identities=12%  Similarity=0.219  Sum_probs=51.5

Q ss_pred             ccccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-----CceEEEEeHHHHHHHHHHhhh
Q 039385           64 NTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-----RLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        64 ~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-----~~lvGivs~~dil~~~~~~~~  122 (126)
                      +++|+.|++++..-+.+..+.+.+..++.+..||+|+.     +++.|.|=++.++..+....-
T Consensus       585 ~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f  648 (762)
T KOG0474|consen  585 GEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVF  648 (762)
T ss_pred             hhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhh
Confidence            45888899999999999999999999999999999852     478999999999988876554

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=90.07  E-value=0.71  Score=37.23  Aligned_cols=50  Identities=14%  Similarity=0.179  Sum_probs=44.2

Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      +.++-+-+.++|.++=.++.--+.++.+|.+ -|+++|+|++.++-+++..
T Consensus       810 paPfQLve~TSL~K~HtLFSLLgL~~AYVT~-~GrLvGVValkELRkAie~  859 (931)
T KOG0476|consen  810 PAPFQLVEGTSLYKVHTLFSLLGLNHAYVTS-CGRLVGVVALKELRKAIEN  859 (931)
T ss_pred             CCceeeeccchHHHHHHHHHHhccchhhhcc-cCcEEEEEEHHHHHHHHHh
Confidence            3456778899999998888889999999998 7999999999999988865

>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria

Probab=88.71  E-value=1.7  Score=24.69  Aligned_cols=28  Identities=25%  Similarity=0.486  Sum_probs=18.1

Q ss_pred             CCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           92 VHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        92 ~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ...+-|+|++|..+|+++.++-++...+
T Consensus        12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~   39 (76)
T PF05198_consen   12 APEVRLIDEDGEQLGVMSLREALRLAKE   39 (76)
T ss_dssp             -SEEEEE-TTS-EEEEEEHHHHHHHHHH
T ss_pred             CCEEEEECCCCcEeceEEHHHHHHHHHH
Confidence            3566677778888888888877766544

IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.

>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B

Probab=80.69  E-value=2.2  Score=25.92  Aligned_cols=18  Identities=28%  Similarity=0.307  Sum_probs=13.9

Q ss_pred             CEEEEEcCCCceEEEEeH
Q 039385           93 HRVWVVDQQRLLLGLVSL  110 (126)
Q Consensus        93 ~~lpVvd~~~~lvGivs~  110 (126)
                      -..||.|.+|+++|+|+.
T Consensus        92 ~~~PV~d~~g~viG~V~V  109 (116)
T PF14827_consen   92 AFAPVYDSDGKVIGVVSV  109 (116)
T ss_dssp             EEEEEE-TTS-EEEEEEE
T ss_pred             EEEeeECCCCcEEEEEEE
Confidence            578999889999999974

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=80.28  E-value=4.7  Score=32.05  Aligned_cols=49  Identities=16%  Similarity=0.198  Sum_probs=39.2

Q ss_pred             eEEEeCC-CCHHHHHHHHHhcCCCEEEEE-c-CCCceEEEEeHHHHHHHHHH
Q 039385           71 LLTCQVD-SPLSEVIGKALTKHVHRVWVV-D-QQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        71 ~~~v~~~-~~l~~~~~~m~~~~~~~lpVv-d-~~~~lvGivs~~dil~~~~~  119 (126)
                      ..++..+ .++.+....|.+......||+ + ++++++|+|.++++...+..
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~  609 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILN  609 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhh
Confidence            3444444 789999999999888888887 3 35699999999999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	9e-16
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-15
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	3e-06
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-14
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	7e-04
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	1e-13
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	8e-05
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-13
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	3e-09
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	4e-05
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-04
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	1e-07
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	2e-06
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-07
3ddj_A	296	CBS domain-containing protein; structural genomics	6e-05
1pvm_A	184	Conserved hypothetical protein TA0289; structural	3e-07
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	6e-07
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	7e-07
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	9e-07
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	1e-04
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	1e-06
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	5e-06
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	7e-06
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	1e-05
4fry_A	157	Putative signal-transduction protein with CBS DOM;	1e-05
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	2e-05
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	2e-05
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	2e-05
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-05
1pbj_A	125	Hypothetical protein; structural genomics, domain,	2e-05
1vr9_A	213	CBS domain protein/ACT domain protein; structural	4e-05
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	5e-05
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	8e-05
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	8e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	5e-04
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	8e-04
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	8e-04

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 70.7 bits (173), Expect = 9e-16
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query: 21  RLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPL 80
            L+  + + D+         + L L+  E                     + TC+    L
Sbjct: 227 TLLNVYESVDVMHLIQDGDYSNLDLSVGEALL----------KRPANFDGVHTCRATDRL 276

Query: 81  SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
             +        VHR++VVD+   L G++SL D++  +
Sbjct: 277 DGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYI 313

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 69.6 bits (170), Expect = 2e-15
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 21  RLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPL 80
            LI  + A D+ G     +   L L+  E   +           +     + TC  +  L
Sbjct: 232 YLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR----------RSDDFEGVYTCTKNDKL 281

Query: 81  SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
           S ++       VHR +VVD    L+G+++L+D+++ +
Sbjct: 282 STIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 318

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 14/66 (21%), Positives = 31/66 (46%)

Query: 61  SESNTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS 120
            + N   Q  + +CQ+ +P+ +VI       V  V ++D+   L+ +    D++ +++  
Sbjct: 190 GDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG 249

Query: 121 ILADFQ 126
           I  D  
Sbjct: 250 IYNDLS 255

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 66.9 bits (163), Expect = 2e-14
 Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 10/97 (10%)

Query: 21  RLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPL 80
           R++  +S  D+           L ++  +  Q            +     +L C +   L
Sbjct: 235 RVVDIYSKFDVINLAAEKTYNNLDVSVTKALQH----------RSHYFEGVLKCYLHETL 284

Query: 81  SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
             +I + +   VHR+ VVD+  ++ G+VSL+D+++ L
Sbjct: 285 EAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL 321

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 11/105 (10%), Positives = 34/105 (32%), Gaps = 8/105 (7%)

Query: 21  RLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPL 80
             +   +   +       +  +          + ++  L  E        +   +  +P+
Sbjct: 161 NTLYILTHKRILKFLKLFITEF-------PKPEFMSKSL-EELQIGTYANIAMVRTTTPV 212

Query: 81  SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADF 125
              +G  +   V  + VVD++  ++ + S  D+I +       + 
Sbjct: 213 YVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNL 257

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 62.2 bits (152), Expect = 1e-13
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 10/98 (10%)

Query: 20  WRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSP 79
             LI  + A D+ G     +   L L+  E   +           +     + TC  +  
Sbjct: 52  GYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR----------RSDDFEGVYTCTKNDK 101

Query: 80  LSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
           LS ++       VHR +VVD    L+G+++L+D+++ +
Sbjct: 102 LSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 139

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 38.7 bits (91), Expect = 8e-05
 Identities = 12/57 (21%), Positives = 28/57 (49%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADF 125
             + +CQ+ +P+ +VI       V  V ++D+   L+ +    D++ +++  I  D 
Sbjct: 19  DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDL 75

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 16/97 (16%), Positives = 41/97 (42%), Gaps = 6/97 (6%)

Query: 21  RLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPL 80
           RL+G  +++D       +   W          + +T+    E      R+++T +    L
Sbjct: 189 RLVGIITSTDFIK---LLGSDWAFNHMQTGNVREITNVRMEEIMK---RDVITAKEGDKL 242

Query: 81  SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
            ++    +T  +  + VVD+   + G+++  D+++  
Sbjct: 243 KKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF 279

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 21  RLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPL 80
           +++G  ++ D+        +  L     E       +    E        ++T + ++ +
Sbjct: 47  KVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIME---ENVITLKENADI 103

Query: 81  SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADFQ 126
            E I   LTK+V    +V+ +  L+ L++  D+IR L   I  +  
Sbjct: 104 DEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEV 149

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 68  QRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118
            R+++       L +V    +     R+ VV + RL+ G+++ TD I++L 
Sbjct: 155 TRDVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLV-GIITSTDFIKLLG 204

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 14/111 (12%)

Query: 19  GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQ---------- 68
            W L+G  S  DL       +          F     T   F+E                
Sbjct: 46  NWTLVGVVSDYDLL--ALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDL 103

Query: 69  --RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
                L  +  + L +     L     R+ VVD    L+G+++  +++R  
Sbjct: 104 MTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAA 154

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 11/50 (22%), Positives = 25/50 (50%)

Query: 66  TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115
           T ++ L   +  + + + +   + K V  + V+D    L+G+VS  D++ 
Sbjct: 11  TPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLA 60

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 6/49 (12%), Positives = 24/49 (48%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
             L+T    + ++    + + K +  + ++++   + G+++  D++  L
Sbjct: 235 TNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIAL 283

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 40.1 bits (94), Expect = 6e-05
 Identities = 10/53 (18%), Positives = 27/53 (50%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI 121
            ++ T   +  L + +   L +   R+ V+D    ++G+V++ + I+ L  ++
Sbjct: 164 TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAV 216

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILAD 124
           + +   + D  + +V        + R  VVD    ++G+V+LTD+ R L  + + D
Sbjct: 83  KPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASITD 138

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 44.5 bits (106), Expect = 6e-07
 Identities = 13/49 (26%), Positives = 27/49 (55%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
             L+T + DSP++  +      ++  + VVD +  L G++S+ D+ R +
Sbjct: 75  ASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAI 123

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 44.1 bits (105), Expect = 7e-07
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
             +     ++ + E++       V RV V+ + R L+G+V+  D+ R L
Sbjct: 82  DSIYYVDANASIQEMLNVMEEHQVRRVPVISEHR-LVGIVTEADIARHL 129

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 44.2 bits (105), Expect = 9e-07
 Identities = 15/102 (14%), Positives = 38/102 (37%), Gaps = 11/102 (10%)

Query: 20  WRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQREL----LTCQ 75
            +L+G      L          ++P   L  +                  E+    +   
Sbjct: 57  NKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSS-------MKRLIAKNASEIMLDPVYVH 109

Query: 76  VDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
           +D+PL E +   +  ++  + VVD++  ++G ++  +++  L
Sbjct: 110 MDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLAL 151

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 10/49 (20%), Positives = 25/49 (51%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
            +    + D+P+ E++ + L   V R   V +   L+G++ +  +++V 
Sbjct: 24  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVS 72

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 43.2 bits (102), Expect = 1e-06
 Identities = 12/97 (12%), Positives = 23/97 (23%), Gaps = 18/97 (18%)

Query: 21  RLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPL 80
           R +G    S L             L                         + + +    L
Sbjct: 46  RYLGMVHLSRLLEGRKGWPTVKEKLGEE------------------LLETVRSYRPGEQL 87

Query: 81  SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
            + +          V + D+     G+VS   ++  L
Sbjct: 88  FDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFL 124

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 41.8 bits (99), Expect = 5e-06
 Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI 121
           R L+T  V++PL EV+ K     +  + + ++ + ++G+ +L+D++   R  +
Sbjct: 80  RNLITANVNTPLGEVLRKMAEHRIKHILIEEEGK-IVGIFTLSDLLEASRRRL 131

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 41.9 bits (98), Expect = 7e-06
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 8/101 (7%)

Query: 17  GNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQV 76
                L+G    + L     A   +  P       QQ L   L     T      LT   
Sbjct: 53  TESQILVGIVQRAQLVQALQAEPPSRAP-----GHQQCLQDILARGCPTEPVT--LTLFS 105

Query: 77  DSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
           ++ L +        ++  ++V  + R  +G VS  +M + +
Sbjct: 106 ETTLHQAQNLFKLLNLQSLFVTSRGR-AVGCVSWVEMKKAI 145

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 8/47 (17%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115
           R++    +++   + +       V  + V+D  + ++GL+S+ D+++
Sbjct: 82  RQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGK-VIGLLSIGDLVK 127

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 8/52 (15%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS 120
            ++   +      E +       +  + V+D  + L+GL+S+ D+++ +   
Sbjct: 86  AKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGK-LIGLISIGDLVKSVIAD 136

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
           + ++ CQ +S   +++          V V +  R L G++S+ D+++  
Sbjct: 101 KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGR-LAGIISIGDVVKAR 148

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
           R ++T   D P+  V  K    ++  V VVD  R ++G+V+  D+ R+ 
Sbjct: 70  RNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLF 118

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 71  LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
            +T     P+     K    ++  V VV++   L+G++S+ D+    
Sbjct: 80  PITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER 126

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 9/55 (16%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 66  TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVD---QQRLLLGLVSLTDMIRVL 117
           T+   +  C+ +  + ++    + K +  + V+    +   ++G V+ T+M ++L
Sbjct: 88  TRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKIL 142

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 39.8 bits (94), Expect = 2e-05
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
           R+L+T    + + E   K +   V R+ V +    ++G++S TD++R  
Sbjct: 73  RDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDE-IIGVISATDILRAK 120

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 11/49 (22%), Positives = 19/49 (38%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
                   +  ++  +   L      + VVD++  L G VSL D +  L
Sbjct: 80  LPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEAL 128

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query: 21  RLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPL 80
           +L+G  S  DL     + LQ      +L F   +       E       ++ +    + L
Sbjct: 47  KLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPL------FEVMH---TDVTSVAPQAGL 97

Query: 81  SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
            E         +  + VV +   L+G+++ +D + + 
Sbjct: 98  KESAIYMQKHKIGCLPVVAKDV-LVGIITDSDFVTIA 133

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 39.1 bits (91), Expect = 8e-05
 Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 8/112 (7%)

Query: 14  ISLGNGWRLIGTFSASDLR---GCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQ-- 68
           +      RL+G     DL              +  + + FT+     P ++      +  
Sbjct: 54  VVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNI 113

Query: 69  --RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118
                 T    +P+  V+       + +  V    R LLG+++  D+++ + 
Sbjct: 114 LDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGR-LLGIITKKDVLKHIA 164

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 38.8 bits (91), Expect = 8e-05
 Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 69  RELLTCQVDSPLSEVI-----GKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
           ++++T   D+ + E I          + ++++ VVD+   L+G++S  D+IR +
Sbjct: 81  KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTI 134

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 9/61 (14%), Positives = 23/61 (37%)

Query: 66  TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADF 125
               ++   Q+ + L   +   +      + V+D    L GL+S   ++  +      +F
Sbjct: 22  ISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEF 81

Query: 126 Q 126
           +
Sbjct: 82  E 82

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 36.3 bits (84), Expect = 8e-04
 Identities = 9/61 (14%), Positives = 22/61 (36%)

Query: 66  TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADF 125
            +  ++   QV + L   +          + V+D    L GL+    ++  +      +F
Sbjct: 21  IEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEF 80

Query: 126 Q 126
           +
Sbjct: 81  E 81

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 36.3 bits (84), Expect = 8e-04
 Identities = 11/61 (18%), Positives = 23/61 (37%)

Query: 66  TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADF 125
               ++   Q  + L   +          + V+D    L GL+S+T M+  +      +F
Sbjct: 18  IPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEF 77

Query: 126 Q 126
           +
Sbjct: 78  E 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
4esy_A	170	CBS domain containing membrane protein; structural	99.82
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.79
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.78
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.78
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.78
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.77
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.77
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.77
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.77
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.76
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.76
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.75
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.75
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.75
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.74
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.74
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.74
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.74
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.74
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.73
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.72
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.72
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.71
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.71
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.71
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.71
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.71
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.7
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.7
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.7
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.69
3ddj_A	296	CBS domain-containing protein; structural genomics	99.69
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.69
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.69
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.69
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.69
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.69
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.68
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.68
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.68
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.66
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.66
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.66
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.66
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.66
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.66
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.65
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.64
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.63
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.61
3ddj_A	296	CBS domain-containing protein; structural genomics	99.6
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.59
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.58
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.57
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.55
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.54
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.53
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.53
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.47
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.47
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.43
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.42
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.42
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.42
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.41
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.4
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.27
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.27
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.26
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.26
4esy_A	170	CBS domain containing membrane protein; structural	99.23
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.19
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.13
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.12
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.07
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.06
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.06
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.04
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.02
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.01
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.01
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.01
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.0
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.0
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.0
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.0
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.0
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.97
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.97
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.97
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.96
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.96
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.96
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.96
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.96
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.94
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.93
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.93
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.92
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.92
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.92
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.91
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.91
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.88
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.88
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.87
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.85
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.83
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.82
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.78
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.77
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.76
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.73
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.71
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.69
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.54
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.37
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.35
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.28
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.19
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.18
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.15
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.01
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.9
3fio_A	70	A cystathionine beta-synthase domain protein fused	97.81
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.81
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.74
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.42
1tif_A	78	IF3-N, translation initiation factor 3; IF3 N-term	89.3

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.82  E-value=2e-20  Score=121.43  Aligned_cols=114  Identities=17%  Similarity=0.240  Sum_probs=81.1

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccC-cHH---HHHhhh--hhcHHHHHHHHhcCCCCCCCccccccceEEEeC
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGC-HYA---VLQTWL--PLTALEFTQQVLTSPLFSESNTTQQRELLTCQV   76 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~-~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~   76 (126)
                      .|.+++++++||+|++| +++|+||.+|+... ...   ......  ..+..............++ ..+|+++++++.+
T Consensus        43 ~m~~~~~~~~pVvd~~g-~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~im~~~~~tv~~  120 (170)
T 4esy_A           43 TMLEHQIGCAPVVDQNG-HLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVEHLFETGRKLTA-SAVMTQPVVTAAP  120 (170)
T ss_dssp             HHHHTTCSEEEEECTTS-CEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHHHHHHHHHHTTCBH-HHHCBCCSCCBCT
T ss_pred             HHHHcCCeEEEEEcCCc-cEEEEEEHHHHHHHHhhccccchhhhhhhccchhhHHhhhccccccch-hhhcccCcccCCc
Confidence            36789999999999888 99999999999543 111   100000  0111111111111111111 2378889999999


Q ss_pred             CCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           77 DSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        77 ~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++++.+|+++|.+++++++||+| +|+++|+||++||++++..
T Consensus       121 ~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A          121 EDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             TSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSCC
T ss_pred             chhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence            99999999999999999999999 6999999999999987644

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.79  E-value=7.5e-20  Score=117.57  Aligned_cols=100  Identities=12%  Similarity=0.235  Sum_probs=77.6

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHH---HhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCC
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVL---QTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSP   79 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~   79 (126)
                      .|.+++++++||+|+++ +++|++|.+|+........   ......++.                .+|.+++.+++++++
T Consensus        42 ~m~~~~~s~~pVvd~~~-~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~----------------~im~~~~~~v~~~~~  104 (156)
T 3k6e_A           42 LLSQMTYTRVPVVTDEK-QFVGTIGLRDIMAYQMEHDLSQEIMADTDIV----------------HMTKTDVAVVSPDFT  104 (156)
T ss_dssp             HHTTSSSSEEEEECC-C-BEEEEEEHHHHHHHHHHHTCCHHHHTTSBGG----------------GTCBCSCCCBCTTCC
T ss_pred             HHHHcCCcEEEEEcCCC-cEEEEEEecchhhhhhhcccccccccccCHH----------------HhhcCCceecccccH
Confidence            36789999999999887 9999999999954321110   001111222                267889999999999


Q ss_pred             HHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385           80 LSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        80 l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~  121 (126)
                      +.+|+++|.+++  .+||+|++|+++|+||+.||++++....
T Consensus       105 l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~~~  144 (156)
T 3k6e_A          105 ITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNALL  144 (156)
T ss_dssp             HHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHHHh
Confidence            999999998775  4999999999999999999999986543

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.78  E-value=2.8e-19  Score=111.34  Aligned_cols=100  Identities=15%  Similarity=0.095  Sum_probs=78.4

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++++||++++.++++|++|.+|+....... ..+...++.+                +| +++.++.+++++.+
T Consensus        29 ~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~-~~~~~~~v~~----------------~m-~~~~~v~~~~~l~~   90 (130)
T 3hf7_A           29 QLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK-KEFTKEIMLR----------------AA-DEIYFVPEGTPLST   90 (130)
T ss_dssp             HHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSS-SCCCHHHHHH----------------HS-BCCCEEETTCBHHH
T ss_pred             HHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhcc-CccchhhHHH----------------hc-cCCeEeCCCCcHHH
Confidence            467899999999976434999999999996431111 0011123444                34 47789999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      |++.|.+++.+.+||+|++|+++|+||+.|+++.+...
T Consensus        91 ~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~  128 (130)
T 3hf7_A           91 QLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD  128 (130)
T ss_dssp             HHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC-
T ss_pred             HHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCC
Confidence            99999999999999999999999999999999998754

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.78  E-value=5.9e-19  Score=109.28  Aligned_cols=96  Identities=13%  Similarity=0.125  Sum_probs=77.4

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++++||+|++.++++|++|.+|+.......   ....++.++|                + ++.++.+++++.+
T Consensus        30 ~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~---~~~~~v~~~m----------------~-~~~~v~~~~~l~~   89 (127)
T 3nqr_A           30 VIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSD---AEAFSMDKVL----------------R-TAVVVPESKRVDR   89 (127)
T ss_dssp             HHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTT---CCCCCHHHHC----------------B-CCCEEETTCBHHH
T ss_pred             HHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcc---CCCCCHHHHc----------------C-CCeEECCCCcHHH
Confidence            356788999999998723999999999996542111   1233555543                3 4678999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      |+..|.+++.+.+||+|++|+++|+||+.|+++.+.
T Consensus        90 a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~  125 (127)
T 3nqr_A           90 MLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIV  125 (127)
T ss_dssp             HHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC-
T ss_pred             HHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence            999999999999999999999999999999998764

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.78  E-value=7.4e-19  Score=109.24  Aligned_cols=97  Identities=20%  Similarity=0.168  Sum_probs=79.3

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||+|++.++++|++|.+|+.......   ....++.++|                 +++.++.+++++.+
T Consensus        33 ~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~---~~~~~v~~~m-----------------~~~~~v~~~~~l~~   92 (130)
T 3i8n_A           33 KHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSG---SGQKQLGAVM-----------------RPIQVVLNNTALPK   92 (130)
T ss_dssp             HTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTT---TTTSBHHHHS-----------------EECCEEETTSCHHH
T ss_pred             HHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcC---CCcCCHHHHh-----------------cCCcCcCCCCcHHH
Confidence            467899999999998723999999999996442111   1133555543                 36789999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      |++.|.+++.+.+||+|++|+++|+||+.|+++.+..
T Consensus        93 ~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           93 VFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             HHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             HHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHcC
Confidence            9999999999999999999999999999999998753

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.77  E-value=2.2e-19  Score=112.55  Aligned_cols=103  Identities=15%  Similarity=0.087  Sum_probs=77.2

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++++||+|++.++++|++|.+|+.......  .....++.+                +|+ ++.++.+++++.+
T Consensus        30 ~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~--~~~~~~v~~----------------~m~-~~~~v~~~~~l~~   90 (136)
T 3lfr_A           30 AVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKA--DGDSDDVKK----------------LLR-PATFVPESKRLNV   90 (136)
T ss_dssp             HHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSS--SGGGCCGGG----------------TCB-CCCEEETTCBHHH
T ss_pred             HHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhc--cCCCcCHHH----------------HcC-CCeEECCCCcHHH
Confidence            466788999999998723999999999996542211  001223333                454 4889999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhhh
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILAD  124 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~~  124 (126)
                      |+.+|.+++.+.+||+|++|+++|+||+.|+++.+...+..+
T Consensus        91 ~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~~~de  132 (136)
T 3lfr_A           91 LLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDIEDE  132 (136)
T ss_dssp             HHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC-------
T ss_pred             HHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCCcCc
Confidence            999999999999999999999999999999999887766543

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.77  E-value=7.7e-19  Score=109.10  Aligned_cols=95  Identities=16%  Similarity=0.159  Sum_probs=77.2

Q ss_pred             cccCCCCceeeEeeCC-CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            3 WYKKPNVERNSISLGN-GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~-~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      .|.+++++.+||+|++ + +++|++|.+|+.......     ..++.+                +|+ ++.++.+++++.
T Consensus        32 ~m~~~~~~~~pVvd~~~~-~~~Givt~~dl~~~~~~~-----~~~v~~----------------~m~-~~~~v~~~~~l~   88 (129)
T 3jtf_A           32 TIIETAHSRFPVYEDDRD-NIIGILLAKDLLRYMLEP-----ALDIRS----------------LVR-PAVFIPEVKRLN   88 (129)
T ss_dssp             HHHHSCCSEEEEESSSTT-CEEEEEEGGGGGGGGTCT-----TSCGGG----------------GCB-CCCEEETTCBHH
T ss_pred             HHHHcCCCEEEEEcCCCC-cEEEEEEHHHHHhHhccC-----CcCHHH----------------HhC-CCeEeCCCCcHH
Confidence            4678899999999986 5 999999999996442110     112222                444 578999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      +|+.+|.+++.+.+||+|++|+++|+||+.|+++.+...
T Consensus        89 ~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~ge  127 (129)
T 3jtf_A           89 VLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGD  127 (129)
T ss_dssp             HHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence            999999999999999999889999999999999998754

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.77  E-value=7.9e-19  Score=114.15  Aligned_cols=99  Identities=22%  Similarity=0.193  Sum_probs=81.2

Q ss_pred             cccCCCCceeeEeeCC-CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            3 WYKKPNVERNSISLGN-GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~-~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      +|.+++++.+||+|++ + +++|++|.+|+.......    ...++.                .+| ++++++.+++++.
T Consensus        69 ~m~~~~~~~~pVvd~~~~-~lvGivt~~dl~~~~~~~----~~~~v~----------------~im-~~~~~v~~~~~l~  126 (172)
T 3lhh_A           69 TVMQSPHSRFPVCRNNVD-DMVGIISAKQLLSESIAG----ERLELV----------------DLV-KNCNFVPNSLSGM  126 (172)
T ss_dssp             HHHTCCCSEEEEESSSTT-SEEEEEEHHHHHHHHHTT----CCCCGG----------------GGC-BCCEEEETTCCHH
T ss_pred             HHHhCCCCEEEEEeCCCC-eEEEEEEHHHHHHHHhhc----CcccHH----------------HHh-cCCeEeCCCCCHH
Confidence            4678999999999987 6 999999999996432111    011222                266 6889999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhh
Q 039385           82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA  123 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~  123 (126)
                      +|+..|.+++.+.+||+|++|+++|+||+.|+++.+...+..
T Consensus       127 ~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~~d  168 (172)
T 3lhh_A          127 ELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEFFQ  168 (172)
T ss_dssp             HHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCCcc
Confidence            999999999999999999889999999999999999876654

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.77  E-value=9.2e-19  Score=110.97  Aligned_cols=96  Identities=15%  Similarity=0.211  Sum_probs=79.0

Q ss_pred             cccCCCCceeeEeeCC-CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            3 WYKKPNVERNSISLGN-GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~-~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      .|.+++++.+||+|++ + +++|++|.+|+........    ..++.                .+| +++.++.+++++.
T Consensus        50 ~m~~~~~~~~pVvd~~~~-~lvGivt~~dl~~~~~~~~----~~~v~----------------~~m-~~~~~v~~~~~l~  107 (148)
T 3lv9_A           50 ILKEEGVTRYPVCRKNKD-DILGFVHIRDLYNQKINEN----KIELE----------------EIL-RDIIYISENLTID  107 (148)
T ss_dssp             HHHHSCCSEEEEESSSTT-SEEEEEEHHHHHHHHHHHS----CCCGG----------------GTC-BCCEEEETTSBHH
T ss_pred             HHHHCCCCEEEEEcCCCC-cEEEEEEHHHHHHHHhcCC----CccHH----------------Hhc-CCCeEECCCCCHH
Confidence            3667899999999987 5 9999999999964321110    11222                256 6889999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      +|+..|.+++.+.+||+|++|+++|+||+.|+++.+...
T Consensus       108 ~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~  146 (148)
T 3lv9_A          108 KALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGE  146 (148)
T ss_dssp             HHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCc
Confidence            999999999999999999889999999999999998764

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.76  E-value=3e-18  Score=108.45  Aligned_cols=116  Identities=15%  Similarity=0.129  Sum_probs=80.0

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||+|+++ +++|++|.+|+......... +.  ...++........ ......+|.+++.++.+++++.+
T Consensus        32 ~~~~~~~~~~~Vvd~~~-~~~G~vt~~dl~~~~~~~~~-~~--~~~~~~~~~~~~~-~~~v~~~m~~~~~~v~~~~~l~~  106 (152)
T 4gqw_A           32 LLVENRITGFPVIDEDW-KLVGLVSDYDLLALDSGDST-WK--TFNAVQKLLSKTN-GKLVGDLMTPAPLVVEEKTNLED  106 (152)
T ss_dssp             HHHHTTCSEEEEECTTC-BEEEEEEHHHHTTCC----C-CH--HHHHHHTC------CCBHHHHSEESCCCEESSSBHHH
T ss_pred             HHHHcCCceEEEEeCCC-eEEEEEEHHHHHHhhcccCc-cc--chHHHHHHHHHhc-cccHHHhcCCCceEECCCCcHHH
Confidence            46678999999999887 99999999999765221100 00  0000000000000 01112256678889999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhh
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA  123 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~  123 (126)
                      |+++|.+++.+.+||+|++|+++|+||..|+++.+.+....
T Consensus       107 a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~~~~  147 (152)
T 4gqw_A          107 AAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRS  147 (152)
T ss_dssp             HHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC----
T ss_pred             HHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhcccc
Confidence            99999999999999999899999999999999998875543

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.76  E-value=8e-19  Score=111.97  Aligned_cols=100  Identities=14%  Similarity=0.130  Sum_probs=78.3

Q ss_pred             cccCCCCceeeEe-eCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            3 WYKKPNVERNSIS-LGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         3 ~~~~~~~~~~pVv-d~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      .|.+++++++||+ |+++++++|++|.+|+.......    ...++.                .+| +++.++.+++++.
T Consensus        47 ~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~----~~~~v~----------------~~m-~~~~~v~~~~~l~  105 (153)
T 3oco_A           47 LYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID----DKAKIS----------------TIM-RDIVSVPENMKVP  105 (153)
T ss_dssp             HHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH----TTSBGG----------------GTC-BCCEEEETTSBHH
T ss_pred             HHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC----CCCcHH----------------HHh-CCCeEECCCCCHH
Confidence            3667889999999 65434999999999996432111    011222                266 6889999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhh
Q 039385           82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA  123 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~  123 (126)
                      +|+..|.+++.+.+||+|++|+++|+||+.|+++.+...+..
T Consensus       106 ~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~~d  147 (153)
T 3oco_A          106 DVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLRD  147 (153)
T ss_dssp             HHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC----
T ss_pred             HHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccCCC
Confidence            999999999999999999899999999999999999876654

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.75  E-value=3e-18  Score=107.62  Aligned_cols=107  Identities=24%  Similarity=0.330  Sum_probs=80.1

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||+|+++ +++|++|.+|+..............++.++|..-..          -..++.++.+++++.+
T Consensus        36 ~~~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~----------~~~~~~~v~~~~~l~~  104 (144)
T 2nyc_A           36 MLTQGRVSSVPIIDENG-YLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSD----------DFEGVYTCTKNDKLST  104 (144)
T ss_dssp             HHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC----------------CEECTTSBHHH
T ss_pred             HHHHcCcceeeEEcCCC-cEEEEEcHHHHHHHhcccccccCCccHHHHHhcCcc----------ccCCCeEECCCCcHHH
Confidence            35677899999999887 999999999996432211111234577777643000          0015789999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      +++.|.+++.+.+||+|++|+++|+||+.|+++.+...
T Consensus       105 ~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~  142 (144)
T 2nyc_A          105 IMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG  142 (144)
T ss_dssp             HHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred             HHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHhc
Confidence            99999999999999999889999999999999988653

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.75  E-value=6.4e-18  Score=109.84  Aligned_cols=117  Identities=16%  Similarity=0.076  Sum_probs=82.5

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHH-----------hhhhhcHHHHHHHHhcCCCCCCCccccccce
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQ-----------TWLPLTALEFTQQVLTSPLFSESNTTQQREL   71 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~   71 (126)
                      .|.+++++.+||+|+++ +++|+||.+|+..+......           ...+....++...+......+. ..+|.+++
T Consensus        31 ~m~~~~~~~~pVvd~~~-~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~m~~~~  108 (180)
T 3sl7_A           31 LLVEKKVTGLPVIDDNW-TLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVV-GDLMTPSP  108 (180)
T ss_dssp             HHHHHTCSEEEEECTTC-BEEEEEEHHHHTCC-------------------CCCSHHHHHHHHHTTTTCBH-HHHSEESC
T ss_pred             HHHHcCCCeEEEECCCC-eEEEEEEHHHHHhhhhhccccCCcccccccccchhhhhHHHHHHHhccccccH-HHHhCCCc
Confidence            35678899999999888 99999999999753110000           0000011111111111111111 23677788


Q ss_pred             EEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385           72 LTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        72 ~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~  121 (126)
                      .++.+++++.+|+++|.+++++.+||+|++|+++|+||+.|+++.+.+..
T Consensus       109 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~  158 (180)
T 3sl7_A          109 LVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIK  158 (180)
T ss_dssp             CCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             eEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999987654

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.75  E-value=4.2e-18  Score=113.88  Aligned_cols=94  Identities=14%  Similarity=0.100  Sum_probs=79.2

Q ss_pred             CCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHHHH
Q 039385            8 NVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKA   87 (126)
Q Consensus         8 ~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~~m   87 (126)
                      ++..+||+|+++ +++|++|.+|+.....       ..++.+                +|.++++++.+++++.+|++.|
T Consensus        87 ~~~~~~Vvd~~~-~lvGivt~~dll~~~~-------~~~v~~----------------im~~~~~~v~~~~~l~~a~~~m  142 (205)
T 3kxr_A           87 CNDNLFIVDEAD-KYLGTVRRYDIFKHEP-------HEPLIS----------------LLSEDSRALTANTTLLDAAEAI  142 (205)
T ss_dssp             TCCEEEEECTTC-BEEEEEEHHHHTTSCT-------TSBGGG----------------GCCSSCCCEETTSCHHHHHHHH
T ss_pred             CeeEEEEEcCCC-eEEEEEEHHHHHhCCC-------cchHHH----------------HhcCCCeEECCCCCHHHHHHHH
Confidence            789999999887 9999999999964321       113333                6677899999999999999999


Q ss_pred             HhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhhhc
Q 039385           88 LTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADF  125 (126)
Q Consensus        88 ~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~~~  125 (126)
                      .+++++.+||+|++|+++|+||..|+++.+.+...+|+
T Consensus       143 ~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~~ed~  180 (205)
T 3kxr_A          143 EHSREIELPVIDDAGELIGRVTLRAATALVREHYEAQL  180 (205)
T ss_dssp             HTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHHC---
T ss_pred             HhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988877665

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.74  E-value=1.1e-18  Score=112.61  Aligned_cols=102  Identities=16%  Similarity=0.216  Sum_probs=80.4

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||+|+++ +++|++|.+|+..............++.+                +|.+++.++.+++++.+
T Consensus        52 ~~~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~~~~~~~v~~----------------~m~~~~~~v~~~~~l~~  114 (165)
T 3fhm_A           52 TLHAHKIGAVVVTDADG-VVLGIFTERDLVKAVAGQGAASLQQSVSV----------------AMTKNVVRCQHNSTTDQ  114 (165)
T ss_dssp             HHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHHHGGGGGTSBGGG----------------TSBSSCCCBCTTCBHHH
T ss_pred             HHHHcCCCEEEEEcCCC-eEEEEEEHHHHHHHHHhcCCccccCCHHH----------------HhcCCCeEECCCCcHHH
Confidence            35678899999999887 99999999999643222111112223333                56678899999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~  122 (126)
                      |++.|.+++.+.+||+|+ |+++|+||..||++.+.+...
T Consensus       115 a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~~~  153 (165)
T 3fhm_A          115 LMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGEIE  153 (165)
T ss_dssp             HHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC--
T ss_pred             HHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHHH
Confidence            999999999999999997 999999999999999876544

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.74  E-value=4.8e-18  Score=108.77  Aligned_cols=91  Identities=15%  Similarity=0.176  Sum_probs=75.4

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||+|+++++++|++|.+|+.......    ...++.++|                + ++.++.+++++.+
T Consensus        65 ~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~----~~~~v~~im----------------~-~~~~v~~~~~l~~  123 (156)
T 3oi8_A           65 YVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP----EQFHLKSIL----------------R-PAVFVPEGKSLTA  123 (156)
T ss_dssp             HHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG----GGCCHHHHC----------------B-CCCEEETTSBHHH
T ss_pred             HHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC----CcccHHHHc----------------C-CCEEECCCCCHHH
Confidence            466788999999998744999999999996542111    233566654                3 4789999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMI  114 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil  114 (126)
                      |+..|.+++.+.+||+|++|+++|+||+.|++
T Consensus       124 a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          124 LLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             HHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             HHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            99999999999999999999999999999986

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.74  E-value=1.6e-18  Score=106.25  Aligned_cols=95  Identities=25%  Similarity=0.319  Sum_probs=78.1

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||+|+++ +++|+++.+|+.......     ..++.+                +|.+++.++.+++++.+
T Consensus        26 ~~~~~~~~~~~Vvd~~~-~~~G~vt~~dl~~~~~~~-----~~~v~~----------------~~~~~~~~v~~~~~l~~   83 (122)
T 3kpb_A           26 ILIKHNINHLPIVDEHG-KLVGIITSWDIAKALAQN-----KKTIEE----------------IMTRNVITAHEDEPVDH   83 (122)
T ss_dssp             HHHHHTCSCEEEECTTS-BEEEEECHHHHHHHHHTT-----CCBGGG----------------TSBSSCCCEETTSBHHH
T ss_pred             HHHHcCCCeEEEECCCC-CEEEEEEHHHHHHHHHhc-----ccCHHH----------------HhcCCCeEECCCCCHHH
Confidence            35678899999999887 999999999996432111     012222                56678899999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      +++.|.+++.+.+||+|++|+++|+||..|+++.+.+
T Consensus        84 ~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           84 VAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             HHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred             HHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence            9999999999999999988999999999999998765

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.74  E-value=1e-17  Score=118.00  Aligned_cols=107  Identities=24%  Similarity=0.330  Sum_probs=84.3

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||+|+++ +++|++|.+|+..............++.++|..-.          ...+++++|.+++++.+
T Consensus       215 ~m~~~~~~~~pVvd~~~-~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~~~----------~~~~~~~~v~~~~~l~~  283 (323)
T 3t4n_C          215 MLTQGRVSSVPIIDENG-YLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRS----------DDFEGVYTCTKNDKLST  283 (323)
T ss_dssp             HHHHHTCSEEEEECTTC-BEEEEEETTHHHHHHHTTHHHHTTSBHHHHGGGSC----------TTCCCCEEECTTCBHHH
T ss_pred             HHHHcCCCEEEEECCCC-eEEEEEeHHHHHHHHhhchhhhccCCHHHHHhhcc----------ccCCCCEEECCCCCHHH
Confidence            35678899999999888 99999999999654322221223457777663200          00127899999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      |+++|.+++++++||+|++|+++|+||.+|+++.+...
T Consensus       284 ~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~~  321 (323)
T 3t4n_C          284 IMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG  321 (323)
T ss_dssp             HHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred             HHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            99999999999999999999999999999999998653

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.73  E-value=4.3e-18  Score=107.94  Aligned_cols=101  Identities=7%  Similarity=0.153  Sum_probs=79.0

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHH-H---HHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCC
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYA-V---LQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDS   78 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~   78 (126)
                      .|.+++++.+||+|+++ +++|++|.+|+...... .   .......++.+                +|.+++.++.+++
T Consensus        42 ~~~~~~~~~~pVvd~~~-~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~----------------~m~~~~~~v~~~~  104 (150)
T 3lqn_A           42 VLVKSGYSAIPVLDPMY-KLHGLISTAMILDGILGLERIEFERLEEMKVEQ----------------VMKQDIPVLKLED  104 (150)
T ss_dssp             HHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGG----------------TCBSSCCEEETTC
T ss_pred             HHHHcCCcEEEEECCCC-CEEEEEEHHHHHHHHHhhcccchhHHhcCCHHH----------------HhcCCCceeCCCC
Confidence            45678899999999887 99999999999532110 0   00111223333                5677889999999


Q ss_pred             CHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385           79 PLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        79 ~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~  122 (126)
                      ++.+|+..|.++++  +||+|++|+++|+||+.|+++.+.+...
T Consensus       105 ~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~~  146 (150)
T 3lqn_A          105 SFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVR  146 (150)
T ss_dssp             BHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHhH
Confidence            99999999999886  9999999999999999999999987654

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.72  E-value=1.5e-17  Score=106.77  Aligned_cols=102  Identities=17%  Similarity=0.217  Sum_probs=80.4

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHH-------hhhhhcHHHHHHHHhcCCCCCCCccccccceEEEe
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQ-------TWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQ   75 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~   75 (126)
                      .|.+++++.+||+|+++ +++|++|.+|+.........       .....++.+                +|.+++.++.
T Consensus        30 ~m~~~~~~~~pVvd~~~-~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~----------------im~~~~~~v~   92 (160)
T 2o16_A           30 LMEALDIRHVPIVDANK-KLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE----------------VMHTDVTSVA   92 (160)
T ss_dssp             HHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHHHHCC---------CCCBHHH----------------HSCSCEEEBC
T ss_pred             HHHHcCCCEEEEEcCCC-cEEEEEeHHHHHHHHHHhhcccccccchhcccCHHH----------------HhcCCCeEEC
Confidence            35677899999999877 99999999999643221100       011223333                5667899999


Q ss_pred             CCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385           76 VDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        76 ~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~  122 (126)
                      +++++.+|+..|.+++.+.+||+|+ |+++|+||+.||++.+.+.+.
T Consensus        93 ~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~~~~  138 (160)
T 2o16_A           93 PQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAINLLE  138 (160)
T ss_dssp             TTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHhc
Confidence            9999999999999999999999997 999999999999999876543

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.72  E-value=1.8e-18  Score=107.16  Aligned_cols=98  Identities=12%  Similarity=0.053  Sum_probs=79.3

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||+|+ + +++|++|.+|+.....+...  ...++.                ++|.+++.++.+++++.+
T Consensus        30 ~~~~~~~~~~~Vvd~-~-~~~Givt~~dl~~~~~~~~~--~~~~v~----------------~~m~~~~~~v~~~~~l~~   89 (128)
T 3gby_A           30 RLAASGCACAPVLDG-E-RYLGMVHLSRLLEGRKGWPT--VKEKLG----------------EELLETVRSYRPGEQLFD   89 (128)
T ss_dssp             HHHHHTCSEEEEEET-T-EEEEEEEHHHHHTTCSSSCC--TTCBCC----------------GGGCBCCCCBCTTSBGGG
T ss_pred             HHHHCCCcEEEEEEC-C-EEEEEEEHHHHHHHHhhCCc--ccCcHH----------------HHccCCCcEECCCCCHHH
Confidence            366788999999998 7 99999999999654211100  001122                266778899999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      ++..|.+++.+.+||+|++|+++|+||+.|+++.+.+.
T Consensus        90 ~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~~  127 (128)
T 3gby_A           90 NLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAER  127 (128)
T ss_dssp             SHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHTT
T ss_pred             HHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHhh
Confidence            99999999999999999999999999999999998754

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.71  E-value=7.2e-18  Score=104.83  Aligned_cols=98  Identities=21%  Similarity=0.286  Sum_probs=78.8

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccc-cCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLR-GCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      .|.+++++.+||+|+++ +++|++|.+|+. ....... .....++.++|                .+++.++.+++++.
T Consensus        33 ~~~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~-~~~~~~v~~~m----------------~~~~~~v~~~~~l~   94 (133)
T 1y5h_A           33 YMREHDIGALPICGDDD-RLHGMLTDRDIVIKGLAAGL-DPNTATAGELA----------------RDSIYYVDANASIQ   94 (133)
T ss_dssp             HHHHHTCSEEEEECGGG-BEEEEEEHHHHHHTTGGGTC-CTTTSBHHHHH----------------TTCCCCEETTCCHH
T ss_pred             HHHHhCCCeEEEECCCC-eEEEEEeHHHHHHHHHhcCC-CccccCHHHHh----------------cCCCEEECCCCCHH
Confidence            35677899999998877 999999999996 3422211 11234667765                45788999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++++.|.+++.+.+||+|+ |+++|+||+.|+++.+.+
T Consensus        95 ~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           95 EMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             HHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC-
T ss_pred             HHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence            9999999999999999997 999999999999987643

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.71  E-value=1e-17  Score=104.66  Aligned_cols=99  Identities=20%  Similarity=0.253  Sum_probs=79.2

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeecccc-ccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDL-RGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      .|.+++++.+||+|+++ +++|++|.+|+ .......  .....++.++                |.+++.++.+++++.
T Consensus        33 ~~~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~--~~~~~~v~~~----------------m~~~~~~v~~~~~l~   93 (138)
T 2p9m_A           33 KMLKYKISSLPVIDDEN-KVIGIVTTTDIGYNLIRDK--YTLETTIGDV----------------MTKDVITIHEDASIL   93 (138)
T ss_dssp             HHHHHTCCEEEEECTTC-BEEEEEEHHHHHHHHTTTC--CCSSCBHHHH----------------SCSSCCCEETTSBHH
T ss_pred             HHHHCCCcEEEEECCCC-eEEEEEEHHHHHHHHHhhc--ccCCcCHHHH----------------hCCCcEEECCCCCHH
Confidence            35677899999999887 99999999999 5431111  0122355554                456889999999999


Q ss_pred             HHHHHHHhcC-----CCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           82 EVIGKALTKH-----VHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        82 ~~~~~m~~~~-----~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      ++++.|.+++     .+.+||+|++|+++|+||..|+++.+.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~  137 (138)
T 2p9m_A           94 EAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKI  137 (138)
T ss_dssp             HHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHhh
Confidence            9999999999     99999999889999999999999988654

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.71  E-value=8.8e-18  Score=109.54  Aligned_cols=98  Identities=13%  Similarity=0.067  Sum_probs=79.1

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||+|+++++++|+++.+|+.......    ...++.                  |.++++++.+++++.+
T Consensus        63 ~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~----~~~~v~------------------~~~~~~~v~~~~~l~~  120 (173)
T 3ocm_A           63 QLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITE----GRVRRN------------------RLRDPIIVHESIGILR  120 (173)
T ss_dssp             HHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHH----SSCCGG------------------GSBCCCEECGGGCHHH
T ss_pred             HHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcC----CcchhH------------------hcCCCeEECCCCcHHH
Confidence            467889999999998733999999999996432111    001111                  3357899999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~  122 (126)
                      |+.+|.+++.+.+||+|++|+++|+||+.||++.+...+.
T Consensus       121 al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i~  160 (173)
T 3ocm_A          121 LMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFP  160 (173)
T ss_dssp             HHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCCC
T ss_pred             HHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcCC
Confidence            9999999999999999999999999999999999987554

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.71  E-value=7.7e-18  Score=104.70  Aligned_cols=100  Identities=18%  Similarity=0.206  Sum_probs=79.3

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||+| ++ +++|++|.+|+........  ....++.                .+|.+++.++.+++++.+
T Consensus        29 ~~~~~~~~~~~Vvd-~~-~~~Givt~~dl~~~~~~~~--~~~~~v~----------------~~~~~~~~~v~~~~~l~~   88 (133)
T 2ef7_A           29 VMTEKNIGSVIVVD-GN-KPVGIITERDIVKAIGKGK--SLETKAE----------------EFMTASLITIREDSPITG   88 (133)
T ss_dssp             HHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHHHTTC--CTTCBGG----------------GTSEECCCCEETTSBHHH
T ss_pred             HHHhcCCCEEEEEE-CC-EEEEEEcHHHHHHHHhcCC--CcccCHH----------------HHcCCCCEEECCCCCHHH
Confidence            35677899999999 66 9999999999953311110  0011222                266678899999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~  122 (126)
                      +++.|.+++.+.+||+|++|+++|+||+.|+++.+.+...
T Consensus        89 ~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~~  128 (133)
T 2ef7_A           89 ALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFE  128 (133)
T ss_dssp             HHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHC-
T ss_pred             HHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHHH
Confidence            9999999999999999988999999999999999877654

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.70  E-value=7.2e-17  Score=112.74  Aligned_cols=94  Identities=19%  Similarity=0.234  Sum_probs=80.4

Q ss_pred             CCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHHHH
Q 039385            8 NVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKA   87 (126)
Q Consensus         8 ~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~~m   87 (126)
                      +++.+||+|+++ +++|++|.+|+....       ...++.++                |.++++++++++++.+|+..|
T Consensus       172 ~~~~~pVvd~~~-~lvGivt~~dll~~~-------~~~~v~~i----------------m~~~~~~v~~~~~l~ea~~~m  227 (286)
T 2oux_A          172 TIYYVYVVDQEN-HLVGVISLRDLIVND-------DDTLIADI----------------LNERVISVHVGDDQEDVAQTI  227 (286)
T ss_dssp             CCSEEEEECTTC-BEEEEEEHHHHTTSC-------TTSBHHHH----------------SBSCCCCEETTSBHHHHHHHH
T ss_pred             ceeEEEEEcCCC-eEEEEEEHHHHHcCC-------CCCcHHHH----------------cCCCCeeecCCCCHHHHHHHH
Confidence            788899999887 999999999996542       12356664                456889999999999999999


Q ss_pred             HhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhhhc
Q 039385           88 LTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADF  125 (126)
Q Consensus        88 ~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~~~  125 (126)
                      .+++.+.+||+|++|+++|+||..|+++.+.+...+|+
T Consensus       228 ~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e~~ed~  265 (286)
T 2oux_A          228 RDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEAASDY  265 (286)
T ss_dssp             HHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHHHC--
T ss_pred             HHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999988877665

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.70  E-value=1.2e-17  Score=104.07  Aligned_cols=98  Identities=13%  Similarity=0.183  Sum_probs=77.3

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeecccccc-CcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRG-CHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      .|.+++++.+||+| ++ +++|++|.+|+.. +..... .....++.+                +|.+++.++.+++++.
T Consensus        34 ~~~~~~~~~~~Vvd-~~-~~~Givt~~dl~~~~~~~~~-~~~~~~v~~----------------~m~~~~~~v~~~~~l~   94 (135)
T 2rc3_A           34 KMAADNIGALLVMK-DE-KLVGILTERDFSRKSYLLDK-PVKDTQVKE----------------IMTRQVAYVDLNNTNE   94 (135)
T ss_dssp             HHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHGGGSSS-CGGGSBGGG----------------TSBCSCCCBCTTCBHH
T ss_pred             HHHhcCCCEEEEEE-CC-EEEEEEehHHHHHHHHHcCC-CcccCCHHH----------------hccCCCeEECCCCcHH
Confidence            35677899999998 66 9999999999963 321110 011223333                5677889999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      +|++.|.+++.+.+||+| +|+++|+||..|+++.+.+.
T Consensus        95 ~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~~  132 (135)
T 2rc3_A           95 DCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAISQ  132 (135)
T ss_dssp             HHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC-
T ss_pred             HHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHhc
Confidence            999999999999999999 79999999999999988654

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.70  E-value=7.7e-17  Score=108.14  Aligned_cols=94  Identities=16%  Similarity=0.171  Sum_probs=79.7

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||+|+++ +++|++|.+|+.....       ..++.                ++|.+++.++.+++++.+
T Consensus        38 ~m~~~~~~~~pVvd~~~-~l~Givt~~dl~~~~~-------~~~v~----------------~im~~~~~~v~~~~~l~~   93 (213)
T 1vr9_A           38 RMRQYQTNECIVKDREG-HFRGVVNKEDLLDLDL-------DSSVF----------------NKVSLPDFFVHEEDNITH   93 (213)
T ss_dssp             HHHHTTSSEEEEECTTS-BEEEEEEGGGGTTSCT-------TSBSG----------------GGCBCTTCCEETTSBHHH
T ss_pred             HHHHCCCCEEEEEcCCC-EEEEEEEHHHHHhhcC-------CCcHH----------------HHccCCCEEECCCCcHHH
Confidence            36678999999999877 9999999999975431       11222                266778899999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      |++.|.+++++.+||+|++|+++|+||..|+++.+...
T Consensus        94 a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~  131 (213)
T 1vr9_A           94 ALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA  131 (213)
T ss_dssp             HHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred             HHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence            99999999999999999889999999999999987654

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.69  E-value=2e-17  Score=105.90  Aligned_cols=102  Identities=13%  Similarity=0.198  Sum_probs=79.3

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHH----HHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCC
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYA----VLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDS   78 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~   78 (126)
                      .|.+++++.+||+|+++ +++|++|..|+......    ....+...++.+                +|.+++.++.+++
T Consensus        41 ~m~~~~~~~~pVvd~~~-~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~----------------~m~~~~~~v~~~~  103 (159)
T 1yav_A           41 VLTKTGYTAIPVLDPSY-RLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE----------------VMLTDIPRLHIND  103 (159)
T ss_dssp             HHHHHCCSEEEEECTTC-BEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH----------------HSBCSCCEEETTS
T ss_pred             HHHhCCCcEEEEECCCC-CEEEEeEHHHHHHHhhhhcccchhhhccCCHHH----------------hcCCCCceEcCCC
Confidence            35678899999999887 99999999999532111    000112335555                4466889999999


Q ss_pred             CHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhh
Q 039385           79 PLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA  123 (126)
Q Consensus        79 ~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~  123 (126)
                      ++.+|+..|.++++  +||+|++|+++|+||+.|+++.+.+....
T Consensus       104 ~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~~~  146 (159)
T 1yav_A          104 PIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIRS  146 (159)
T ss_dssp             BHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHHHh
Confidence            99999999998876  99999889999999999999998876543

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.69  E-value=4.8e-17  Score=113.34  Aligned_cols=104  Identities=8%  Similarity=0.192  Sum_probs=84.1

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHh-----hhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCC
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQT-----WLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVD   77 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~   77 (126)
                      .|.+++++.+||+|+++ +++|++|..|+.......+..     ....++.+                +|.+++.++.++
T Consensus       181 ~m~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~----------------~m~~~~~~v~~~  243 (296)
T 3ddj_A          181 LMLRRGFRRLPVIDDDN-KVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD----------------VMVTNLVTIDEL  243 (296)
T ss_dssp             HHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH----------------HSBCCCCBCCTT
T ss_pred             HHHHcCCCEEEEEcCCC-EEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHHH----------------HhCCCCeEECCC
Confidence            35678899999999888 999999999996442222111     12234444                456788999999


Q ss_pred             CCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhh
Q 039385           78 SPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA  123 (126)
Q Consensus        78 ~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~  123 (126)
                      +++.+|+++|.+++.+++||+|++|+++|+||+.||++.+.+....
T Consensus       244 ~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~~~~  289 (296)
T 3ddj_A          244 ASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVM  289 (296)
T ss_dssp             SBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999877653

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.69  E-value=5.3e-17  Score=99.69  Aligned_cols=97  Identities=19%  Similarity=0.247  Sum_probs=77.5

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||+| ++ +++|++|.+|+........ .....++.++                |.+++.++.+++++.+
T Consensus        26 ~~~~~~~~~~~Vvd-~~-~~~G~it~~dl~~~~~~~~-~~~~~~v~~~----------------m~~~~~~v~~~~~l~~   86 (125)
T 1pbj_A           26 NYVENAKGSSVVVK-EG-VRVGIVTTWDVLEAIAEGD-DLAEVKVWEV----------------MERDLVTISPRATIKE   86 (125)
T ss_dssp             HHHHHCCCEEEEEE-TT-EEEEEEEHHHHHHHHHHTC-CTTTSBHHHH----------------CBCGGGEECTTSCHHH
T ss_pred             HHHHcCCCEEEEEe-CC-eeEEEEeHHHHHHHHhcCC-cccccCHHHH----------------cCCCCeEECCCCCHHH
Confidence            35667899999999 66 9999999999964321110 1123355554                4568899999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      +++.|.+++.+.+||+|+ |+++|+||..|+++.+..
T Consensus        87 ~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           87 AAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             HHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred             HHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence            999999999999999997 999999999999998754

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.69  E-value=9.2e-17  Score=102.89  Aligned_cols=107  Identities=12%  Similarity=0.076  Sum_probs=80.8

Q ss_pred             cccCCCCceeeEeeC--CCceeEEEeeccccccCcHHHHH---hhhhhcHHHHHHHHhcCCCCCCCccccccc-eEEEeC
Q 039385            3 WYKKPNVERNSISLG--NGWRLIGTFSASDLRGCHYAVLQ---TWLPLTALEFTQQVLTSPLFSESNTTQQRE-LLTCQV   76 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~--~~~~l~G~is~~dl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~-~~~v~~   76 (126)
                      .|.+++++++||+|+  ++ +++|++|..|+.........   .....++.++|..-           .+..+ +.++.+
T Consensus        38 ~~~~~~~~~~pVvd~~~~~-~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~~m~~~-----------~~~~~~~~~v~~  105 (164)
T 2pfi_A           38 VVTSTDVTEYPLVESTESQ-ILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILARG-----------CPTEPVTLTLFS  105 (164)
T ss_dssp             HHHTCCCSEEEEESCTTTC-BEEEEEEHHHHHHHHHC-------CCCCBHHHHHHTT-----------CCCBCCCCCEET
T ss_pred             HHHhCCCCceeEEecCCCC-EEEEEEEHHHHHHHHHhhccccCCcccchhhhhhccc-----------ccccCCceEECC
Confidence            467889999999997  55 99999999999643211100   01123566666420           01112 688999


Q ss_pred             CCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385           77 DSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        77 ~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~  122 (126)
                      ++++.+|+..|.+++.+.+||+| +|+++|+||+.|+++.+.+...
T Consensus       106 ~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~~~~  150 (164)
T 2pfi_A          106 ETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISNLTN  150 (164)
T ss_dssp             TCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHHS
T ss_pred             CCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHhhhC
Confidence            99999999999999999999999 7999999999999999887653

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.69  E-value=2.6e-17  Score=105.12  Aligned_cols=101  Identities=11%  Similarity=0.115  Sum_probs=79.9

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||++ ++ +++|++|.+|+..............++.++                |.+++.++.+++++.+
T Consensus        38 ~~~~~~~~~~~V~~-~~-~~~Givt~~dl~~~~~~~~~~~~~~~v~~~----------------m~~~~~~v~~~~~l~~   99 (157)
T 4fry_A           38 LMAEKGIGALLVVD-GD-DIAGIVTERDYARKVVLQERSSKATRVEEI----------------MTAKVRYVEPSQSTDE   99 (157)
T ss_dssp             HHHHHTCSEEEEES-SS-SEEEEEEHHHHHHHSGGGTCCSSSCBHHHH----------------SBSSCCCBCTTSBHHH
T ss_pred             HHHHcCCCEEEEee-CC-EEEEEEEHHHHHHHHHhccCCccccCHHHH----------------cCCCCcEECCCCcHHH
Confidence            35678899999954 56 999999999995431111111123456664                4568899999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~  122 (126)
                      |+++|.+++.+.+||+| +|+++|+||+.|+++.+.....
T Consensus       100 ~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~~  138 (157)
T 4fry_A          100 CMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQQ  138 (157)
T ss_dssp             HHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCC
T ss_pred             HHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHH
Confidence            99999999999999999 7999999999999999887654

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.69  E-value=1.5e-17  Score=106.70  Aligned_cols=101  Identities=16%  Similarity=0.217  Sum_probs=80.3

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCcccccc--ceEEEeCCCCHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQR--ELLTCQVDSPLS   81 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~--~~~~v~~~~~l~   81 (126)
                      |.+++++.+||+|+++ +++|++|.+|+....... ......++.+                +|.+  ++.++.+++++.
T Consensus        42 m~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~-~~~~~~~v~~----------------~m~~~~~~~~v~~~~~l~  103 (159)
T 3fv6_A           42 MFLEDVGTLFVVDRDA-VLVGVLSRKDLLRASIGQ-QELTSVPVHI----------------IMTRMPNITVCRREDYVM  103 (159)
T ss_dssp             HHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHTSC-SCTTTCBGGG----------------TSEETTSCCCBCTTSBHH
T ss_pred             HHHCCCCEEEEEcCCC-cEEEEEeHHHHHHHhhcc-CcccCcCHHH----------------HHcCCCCcEEECCCCCHH
Confidence            5677899999999887 999999999995421000 0011123333                5566  789999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCC---ceEEEEeHHHHHHHHHHhhh
Q 039385           82 EVIGKALTKHVHRVWVVDQQR---LLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~---~lvGivs~~dil~~~~~~~~  122 (126)
                      +|+..|.+++++.+||+|++|   +++|+||+.||++.+.+...
T Consensus       104 ~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~~~  147 (159)
T 3fv6_A          104 DIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLSE  147 (159)
T ss_dssp             HHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHHhh
Confidence            999999999999999999888   99999999999999887654

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.69  E-value=4.3e-17  Score=103.91  Aligned_cols=101  Identities=12%  Similarity=0.168  Sum_probs=78.5

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccC-cHHH-H--HhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCC
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGC-HYAV-L--QTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDS   78 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~-~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~   78 (126)
                      .|.+++++.+||+|+++ +++|++|.+|+... .... +  ..+...++.                .+|.+++.++.+++
T Consensus        38 ~m~~~~~~~~pVvd~~~-~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~----------------~~m~~~~~~v~~~~  100 (157)
T 2emq_A           38 VLTKTGYSAIPVLDTSY-KLHGLISMTMMMDAILGLERIEFERLETMKVE----------------EVMNRNIPRLRLDD  100 (157)
T ss_dssp             HHHHSSSSEEEEECTTC-CEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGG----------------GTCBCCCCEEETTS
T ss_pred             HHHHCCceEEEEEcCCC-CEEEEeeHHHHHHHHhcccccchHHhcCCcHH----------------HHhCCCCceecCCC
Confidence            35678999999999877 99999999999532 1100 0  001111222                26677899999999


Q ss_pred             CHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385           79 PLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        79 ~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~  122 (126)
                      ++.+|+..|.++++  +||+|++|+++|+||+.|+++.+.....
T Consensus       101 ~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~~  142 (157)
T 2emq_A          101 SLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLH  142 (157)
T ss_dssp             BHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHhh
Confidence            99999999999987  9999988999999999999999876543

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.68  E-value=1.3e-17  Score=109.32  Aligned_cols=100  Identities=17%  Similarity=0.169  Sum_probs=78.9

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||+|+++ +++|++|.+|+..............++.+                +|.+++.++.+++++.+
T Consensus        34 ~~~~~~~~~~pVvd~~g-~~vGivt~~dl~~~~~~~~~~~~~~~v~~----------------im~~~~~~v~~~~~l~~   96 (184)
T 1pvm_A           34 IMNENHLYGLVVKDDNG-NDVGLLSERSIIKRFIPRNKKPDEVPIRL----------------VMRKPIPKVKSDYDVKD   96 (184)
T ss_dssp             HHHHHTCCEEEEECTTS-CEEEEEEHHHHHHHTGGGCCCGGGSBGGG----------------TSBSSCCEEETTCBHHH
T ss_pred             HHHHcCCCEEEEEcCCC-cEEEEEeHHHHHHHHhhcccCcccCCHHH----------------HhCCCCcEECCCCCHHH
Confidence            35678899999999877 99999999999542111000011122333                66778899999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      |+++|.+++.+.+||+|++|+++|+||+.|+++.+..
T Consensus        97 a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           97 VAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             HHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             HHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence            9999999999999999988999999999999987665

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.68  E-value=2.2e-17  Score=103.17  Aligned_cols=99  Identities=20%  Similarity=0.393  Sum_probs=79.3

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccc-cCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLR-GCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      .|.+++++.+||+|+++ +++|++|.+|+. .+.....  ....++.+                +|.+++.++.+++++.
T Consensus        32 ~~~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~--~~~~~v~~----------------~m~~~~~~v~~~~~l~   92 (138)
T 2yzi_A           32 LMMEFDVGSLVVINDDG-NVVGFFTKSDIIRRVIVPGL--PYDIPVER----------------IMTRNLITANVNTPLG   92 (138)
T ss_dssp             HHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHTTTTCC--CTTSBGGG----------------TCBCSCCEEETTSBHH
T ss_pred             HHHHcCCCEEEEEcCCC-cEEEEEeHHHHHHHHHhcCC--cccCCHHH----------------HhhCCCeEECCCCcHH
Confidence            35677899999999877 999999999994 3321110  01112222                6677899999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385           82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~  121 (126)
                      +++..|.+++.+++ |+|++|+++|+||..|+++.+.+..
T Consensus        93 ~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~  131 (138)
T 2yzi_A           93 EVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRL  131 (138)
T ss_dssp             HHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCS
T ss_pred             HHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHH
Confidence            99999999999999 9998899999999999999987654

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.68  E-value=6e-17  Score=105.70  Aligned_cols=119  Identities=13%  Similarity=0.104  Sum_probs=81.1

Q ss_pred             cccCCCCceeeEe--eCCCceeEEEeeccccccCcHHHHHhhhhh---cHHHHHHHH----hcCCCCCCCccccccceEE
Q 039385            3 WYKKPNVERNSIS--LGNGWRLIGTFSASDLRGCHYAVLQTWLPL---TALEFTQQV----LTSPLFSESNTTQQRELLT   73 (126)
Q Consensus         3 ~~~~~~~~~~pVv--d~~~~~l~G~is~~dl~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~m~~~~~~   73 (126)
                      .|.+++++.+||+  |+++ +++|+||..|+..............   ....+....    ...........+|.+++.+
T Consensus        42 ~~~~~~~~~~pVv~~d~~~-~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~  120 (185)
T 2j9l_A           42 IISETTYSGFPVVVSRESQ-RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFT  120 (185)
T ss_dssp             HHHHCCCSEEEEESCTTTC-BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGGGEESSCCE
T ss_pred             HHHhcCCCceeEEEECCCC-eEEEEEEHHHHHHHHHhhcccCCCccccceeecccCCcccccccccCccHHHhhCcCCeE
Confidence            3567899999999  6666 9999999999964321110000000   000000000    0000011123377778999


Q ss_pred             EeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhh
Q 039385           74 CQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA  123 (126)
Q Consensus        74 v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~  123 (126)
                      +.+++++.+|+.+|.+++.+.+||+| +|+++|+||+.|+++.+.+....
T Consensus       121 v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~~~~~  169 (185)
T 2j9l_A          121 VTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMANQ  169 (185)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHCC-
T ss_pred             eCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHHhhcc
Confidence            99999999999999999999999999 89999999999999998876543

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.66  E-value=2.5e-17  Score=104.48  Aligned_cols=94  Identities=20%  Similarity=0.286  Sum_probs=75.6

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||+|+++ +++|+||.+|+....... ..+...++.++                |.+++.++.+++++.+
T Consensus        55 ~m~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~-~~~~~~~v~~~----------------m~~~~~~v~~~~~l~~  116 (149)
T 3k2v_A           55 EITRKNLGMTAICDDDM-NIIGIFTDGDLRRVFDTG-VDMRDASIADV----------------MTRGGIRIRPGTLAVD  116 (149)
T ss_dssp             HHHHHTSSEEEEECTTC-BEEEEEEHHHHHHHHCSS-SCCTTCBHHHH----------------SEESCCEECTTCBHHH
T ss_pred             HHHhCCCcEEEEECCCC-cEEEEecHHHHHHHHhcC-CCcccCcHHHH----------------cCCCCeEECCCCCHHH
Confidence            35678899999999887 999999999996431111 01123456664                4567899999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      |+..|.+++.+.+||+|++ +++|+||..||++
T Consensus       117 a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A          117 ALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             HHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             HHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence            9999999999999999965 9999999999975

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.66  E-value=1.1e-16  Score=102.27  Aligned_cols=113  Identities=13%  Similarity=0.149  Sum_probs=77.9

Q ss_pred             cccCCCCce-eeEeeCCCceeEEEeeccccccCcHHHHHhhhhhc-HHHHHHHHhcCCCCCCCccccccceEEEeCCCCH
Q 039385            3 WYKKPNVER-NSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLT-ALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPL   80 (126)
Q Consensus         3 ~~~~~~~~~-~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l   80 (126)
                      .|.+++++. +||+|++  +++|++|.+|+.......+  +.... ...+.......... ...++|.+ +.++.+++++
T Consensus        41 ~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~v~~im~~-~~~v~~~~~l  114 (157)
T 1o50_A           41 RILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHF--FGFIPKEELIRSSMKRLIAK-NASEIMLD-PVYVHMDTPL  114 (157)
T ss_dssp             HHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHH--HCCCC-------CCCCCSSC-BHHHHCBC-CCCBCTTSBH
T ss_pred             HHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhH--HhhhccHHHHHHHHHHHcCC-cHHHHcCC-CeEECCCCCH
Confidence            356788999 9999864  8999999999964311100  00000 00000000000001 11236677 8999999999


Q ss_pred             HHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385           81 SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        81 ~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~  121 (126)
                      .+|+++|.+++++.+||+|++|+++|+||+.|+++.+.+..
T Consensus       115 ~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~~  155 (157)
T 1o50_A          115 EEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR  155 (157)
T ss_dssp             HHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSC
T ss_pred             HHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHhh
Confidence            99999999999999999998899999999999999987653

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.66  E-value=1.9e-16  Score=111.95  Aligned_cols=106  Identities=21%  Similarity=0.271  Sum_probs=81.9

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++++.+||+|+++ +++|++|.+|+..............++.++|..-.  .        ..++++++.+++++.+|
T Consensus       211 m~~~~~~~~~Vvd~~~-~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~~~--~--------~~~~~~~v~~~~~l~~~  279 (334)
T 2qrd_G          211 LAEKNISAVPIVNSEG-TLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRP--A--------NFDGVHTCRATDRLDGI  279 (334)
T ss_dssp             HHHHTCSEEEEECTTC-BEEEEEETHHHHHHHTTSCGGGGGSBHHHHHTTCC--T--------TCCCCCEECTTCBHHHH
T ss_pred             HHHcCCcEEEEEcCCC-cEEEEEEHHHHHHHhhccccccccCcHHHHHhccc--c--------cCCCCEEECCCCcHHHH
Confidence            5667899999999887 99999999999543111111123456777663100  0        00378899999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      +++|.+++++++||+|++|+++|+||+.|+++.+...
T Consensus       280 ~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~~  316 (334)
T 2qrd_G          280 FDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYD  316 (334)
T ss_dssp             HHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHSC
T ss_pred             HHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHhc
Confidence            9999999999999999889999999999999988654

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.66  E-value=9.8e-17  Score=110.82  Aligned_cols=115  Identities=17%  Similarity=0.220  Sum_probs=79.4

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHH-HH--------Hh---hh-hhcHHHHHHHH-hcCCCCCCCccccc
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYA-VL--------QT---WL-PLTALEFTQQV-LTSPLFSESNTTQQ   68 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~-~~--------~~---~~-~~~~~~~~~~~-~~~~~~~~~~~~m~   68 (126)
                      .|.+++++.+||+|+++ +++|++|..|+...... ..        ..   +. ......+.... ......+ ..++|.
T Consensus       151 ~~~~~~~~~l~Vvd~~~-~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~im~  228 (282)
T 2yzq_A          151 ALLLSNSMALPVVDSEG-NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKP-VAEIMT  228 (282)
T ss_dssp             HHHTCSSSEEEEECTTS-CEEEEEEGGGGGGCGGGCC--------------------------------CCCB-GGGTCB
T ss_pred             HHHHcCCcEEEEEcCCC-eEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCC-HHHhcC
Confidence            36678899999999877 99999999999732100 00        00   00 00000000000 0111122 234888


Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++++++.+++++.+|+++|.+++++++||+|++|+++|+||++|+++.+.+
T Consensus       229 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~~  279 (282)
T 2yzq_A          229 RDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVK  279 (282)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGCC
T ss_pred             CCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHHh
Confidence            899999999999999999999999999999987899999999999987654

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.66  E-value=1.8e-16  Score=112.05  Aligned_cols=107  Identities=21%  Similarity=0.344  Sum_probs=84.4

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++++.+||+|+++ +++|++|.+|+..............++.+++..          ...|.++++++.+++++.++
T Consensus       219 m~~~~~~~~~Vvd~~~-~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~~~----------~~~~~~~~~~v~~~~~l~~a  287 (330)
T 2v8q_E          219 FVQHRVSALPVVDEKG-RVVDIYSKFDVINLAAEKTYNNLDVSVTKALQH----------RSHYFEGVLKCYLHETLEAI  287 (330)
T ss_dssp             HHHHCCSEEEEECTTS-BEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGG----------CCSCCCSCCEECTTSBHHHH
T ss_pred             HHHcCCCeEEEECCCC-cEEEEEEHHHHHHHHhccccccccCcHHHHHhc----------cccccCCCeEECCCCcHHHH
Confidence            5667899999999877 999999999996543221101123466666531          01345788999999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~  121 (126)
                      +++|.+++++++||+|++|+++|+||..|+++.+.+..
T Consensus       288 ~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~~~  325 (330)
T 2v8q_E          288 INRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTG  325 (330)
T ss_dssp             HHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSSC
T ss_pred             HHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhhc
Confidence            99999999999999998899999999999999987654

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.66  E-value=1.4e-16  Score=110.82  Aligned_cols=94  Identities=22%  Similarity=0.258  Sum_probs=74.2

Q ss_pred             CCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHHHH
Q 039385            8 NVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKA   87 (126)
Q Consensus         8 ~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~~m   87 (126)
                      +++.+||+|+++ +++|++|.+|+....       ...++.+                +|.++++++++++++.+|+..|
T Consensus       170 ~~~~~~Vvd~~~-~lvGivt~~dll~~~-------~~~~v~~----------------im~~~~~~v~~~~~l~~a~~~m  225 (278)
T 2yvy_A          170 TIYYIYVVDEKG-RLKGVLSLRDLIVAD-------PRTRVAE----------------IMNPKVVYVRTDTDQEEVARLM  225 (278)
T ss_dssp             CSSEEEEECTTC-BEEEEEEHHHHHHSC-------TTCBSTT----------------TSBSSCCCEETTSBHHHHHHHH
T ss_pred             ceeEEEEECCCC-CEEEEEEHHHHhcCC-------CCCcHHH----------------HhCCCCeEEeCCCCHHHHHHHH
Confidence            789999999887 999999999995331       0112222                6677899999999999999999


Q ss_pred             HhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhhhc
Q 039385           88 LTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADF  125 (126)
Q Consensus        88 ~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~~~  125 (126)
                      .+++.+.+||+|++|+++|+||..|+++.+.+...+|+
T Consensus       226 ~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e~~ed~  263 (278)
T 2yvy_A          226 ADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEATEDI  263 (278)
T ss_dssp             HHHTCSEEEEECTTSBEEEEEEHHHHHHHC--------
T ss_pred             HhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999877766554

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.65  E-value=4.9e-16  Score=106.75  Aligned_cols=55  Identities=15%  Similarity=0.176  Sum_probs=50.3

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~  121 (126)
                      +|.+.++++.+++|+.+|..+|...+++++||++ +|+++||||+.||++++...+
T Consensus       194 ~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~~~~  248 (250)
T 2d4z_A          194 RIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEGSY  248 (250)
T ss_dssp             CEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC--
T ss_pred             cccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHHHHh
Confidence            6788999999999999999999999999999998 799999999999999987543

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.64  E-value=8.8e-17  Score=100.93  Aligned_cols=98  Identities=18%  Similarity=0.160  Sum_probs=76.0

Q ss_pred             cccCCCCceeeEeeCCC-ceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            3 WYKKPNVERNSISLGNG-WRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~-~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      .|.+++++.+||+|+++ ++++|++|.+|+........  ....++                .++|.+++.++.++ ++.
T Consensus        30 ~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~--~~~~~v----------------~~~m~~~~~~v~~~-~l~   90 (141)
T 2rih_A           30 ELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRL--DLDGPA----------------MPIANSPITVLDTD-PVH   90 (141)
T ss_dssp             HHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTC--CTTSBS----------------GGGCBCCCEEETTS-BHH
T ss_pred             HHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCC--CCCCCH----------------HHHcCCCCeEEcCC-CHH
Confidence            35677899999998642 28999999999953311100  001112                23677789999999 999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      +|+++|.+++.+.+||+|++|+++|+||..|+++.+..
T Consensus        91 ~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  128 (141)
T 2rih_A           91 VAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             HHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred             HHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHH
Confidence            99999999999999999988999999999999877644

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.63  E-value=2.6e-16  Score=107.33  Aligned_cols=54  Identities=13%  Similarity=0.176  Sum_probs=44.7

Q ss_pred             cccc-cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           65 TTQQ-RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        65 ~~m~-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++|+ +++.++.+++++.+|+++|.+++++++||+|++|+++|+||++|+++...
T Consensus       189 ~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~~~  243 (245)
T 3l2b_A          189 YVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTHK  243 (245)
T ss_dssp             HHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC-------
T ss_pred             eEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhchhh
Confidence            3777 89999999999999999999999999999999999999999999998754

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.61  E-value=4.3e-16  Score=107.32  Aligned_cols=97  Identities=16%  Similarity=0.290  Sum_probs=76.2

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccC-cHHH-HHh--------hhhhcHHHHHHHHhcCCCCCCCccccccceE
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGC-HYAV-LQT--------WLPLTALEFTQQVLTSPLFSESNTTQQRELL   72 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~-~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~   72 (126)
                      .|.+++++.+||+ +++ +++|++|.+|+... .... ...        ....++.+                +|.+++.
T Consensus       173 ~~~~~~~~~~~Vv-~~~-~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~----------------~m~~~~~  234 (280)
T 3kh5_A          173 TMVRNGFRRLPVV-SEG-RLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEE----------------IMKRDVI  234 (280)
T ss_dssp             HHHHHTCSEEEEE-ETT-EEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHH----------------HSBSSCC
T ss_pred             HHHHcCCCEEEEE-ECC-EEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhCCcHHH----------------HhcCCCE
Confidence            3567889999999 566 99999999999543 1111 100        01223333                5567889


Q ss_pred             EEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           73 TCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        73 ~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      ++.+++++.+|++.|.+++++++||+|++|+++|+||++||++.+
T Consensus       235 ~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~l  279 (280)
T 3kh5_A          235 TAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF  279 (280)
T ss_dssp             CBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGGG
T ss_pred             EECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHhh
Confidence            999999999999999999999999999889999999999998765

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.60  E-value=2.2e-15  Score=104.91  Aligned_cols=96  Identities=15%  Similarity=0.167  Sum_probs=80.4

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++++.+||+|+++ +++|++|.+|+.......   ....++.++                |.+++.++.+++++.++
T Consensus       119 m~~~~~~~lpVvd~~~-~lvGivt~~dl~~~~~~~---~~~~~v~~~----------------m~~~~~~v~~~~~l~~~  178 (296)
T 3ddj_A          119 MVTRNFGSLPVVDIND-KPVGIVTEREFLLLYKDL---DEIFPVKVF----------------MSTKVQTIYKEVRLDQA  178 (296)
T ss_dssp             HHHHTCSEEEEECTTS-CEEEEEEHHHHGGGGGGS---CCCCBHHHH----------------SBCSCCCEETTSBHHHH
T ss_pred             HHHcCCCEEEEEcCCC-cEEEEEeHHHHHHhhhcc---cccccHHHh----------------hcCCCeEECCCCCHHHH
Confidence            5678899999999887 999999999996542221   112355554                45688999999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++.|.+++.+.+||+|++|+++|+||..|+++.+..
T Consensus       179 ~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~  214 (296)
T 3ddj_A          179 VKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAK  214 (296)
T ss_dssp             HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            999999999999999999999999999999998874

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.59  E-value=2e-16  Score=120.79  Aligned_cols=118  Identities=16%  Similarity=0.106  Sum_probs=78.2

Q ss_pred             cc-CCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhh----------hhcHHHHHHHHhcC---------------
Q 039385            4 YK-KPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWL----------PLTALEFTQQVLTS---------------   57 (126)
Q Consensus         4 ~~-~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~----------~~~~~~~~~~~~~~---------------   57 (126)
                      |. +++++.+||+|+++ +++|++|.+|+.........+..          ..+..++.+.+...               
T Consensus       481 ~~~~~~~~~~PVvd~~~-~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~  559 (632)
T 3org_A          481 LEKFPNRLVFPVIDANG-YLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKR  559 (632)
T ss_dssp             HHHSTTCCEECBBCTTC-BBCCEESHHHHTTTTTTC--------------------------------------------
T ss_pred             HHhcCCcceEEEEecCC-eEEEEEEHHHHHHHHHHHhhhcccccccccceeccCHHHHHhhcccCCCCCcccchhhhccc
Confidence            55 78999999999877 99999999999654211100000          00001111111000               


Q ss_pred             -----CCCCCCccccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhh
Q 039385           58 -----PLFSESNTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA  123 (126)
Q Consensus        58 -----~~~~~~~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~  123 (126)
                           .......++|+++++++++++++.++++.|.+++++++||+ ++|+++|+||++|+++.+.+....
T Consensus       560 ~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~~~~~~~~  629 (632)
T 3org_A          560 TATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYGYSNSLEV  629 (632)
T ss_dssp             -----------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEECCCC----
T ss_pred             ceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHHHhhhHHH
Confidence                 00001234899999999999999999999999999999999 589999999999999877665543

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.58  E-value=2.9e-15  Score=111.07  Aligned_cols=94  Identities=22%  Similarity=0.252  Sum_probs=78.8

Q ss_pred             CCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHHH
Q 039385            7 PNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGK   86 (126)
Q Consensus         7 ~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~~   86 (126)
                      .+++.+||+|+++ +++|++|.+|+....       ...++.+                +|.+++.++++++++.++++.
T Consensus       189 ~~~~~ipVvd~~~-~lvGiVt~~Dll~~~-------~~~~v~d----------------im~~~~~~v~~~~~l~ea~~~  244 (473)
T 2zy9_A          189 ETIYYIYVVDEKG-RLKGVLSLRDLIVAD-------PRTRVAE----------------IMNPKVVYVRTDTDQEEVARL  244 (473)
T ss_dssp             SEEEEEEEECTTS-BEEEEEEHHHHHHSC-------TTSBGGG----------------TSBSSCCCEESSSBHHHHHHH
T ss_pred             CceeEEEEECCCC-cEEEEEEHHHHhcCC-------CCCcHHH----------------HhCCCCeEEeCCCcHHHHHHH
Confidence            4689999999887 999999999996321       1113333                666789999999999999999


Q ss_pred             HHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhhh
Q 039385           87 ALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILAD  124 (126)
Q Consensus        87 m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~~  124 (126)
                      |.+++.+.+||+|++|+++|+||..|+++.+.....+|
T Consensus       245 m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e~~ed  282 (473)
T 2zy9_A          245 MADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEATED  282 (473)
T ss_dssp             HHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHHHHHH
T ss_pred             HHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHHhhhh
Confidence            99999999999999999999999999999987765443

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.57  E-value=3.7e-15  Score=102.60  Aligned_cols=112  Identities=16%  Similarity=0.216  Sum_probs=80.7

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHH-Hhhh-hhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVL-QTWL-PLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      |.+++++++||+|+++++++|++|.+|+........ ..+. ......+....    ..+ ..++|.+++.++.+++++.
T Consensus        30 m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-v~~im~~~~~~v~~~~~~~  104 (280)
T 3kh5_A           30 MNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAI----NEP-VREIMEENVITLKENADID  104 (280)
T ss_dssp             HHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHT----TSB-GGGTSBCSCCCEETTCBHH
T ss_pred             HHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHh----hhh-HHHhcCCCCEEECCCCCHH
Confidence            567899999999973339999999999954321110 0000 00000111100    111 2347888999999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      +|++.|.+++.+++||+|++|+++|++|..|+++.+...
T Consensus       105 ~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~  143 (280)
T 3kh5_A          105 EAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDK  143 (280)
T ss_dssp             HHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGG
T ss_pred             HHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhc
Confidence            999999999999999999999999999999999987654

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.55  E-value=1.6e-14  Score=102.00  Aligned_cols=108  Identities=11%  Similarity=0.163  Sum_probs=83.1

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHH-------hhhhhcHHHHHHHHhcCCCCCCCccccccceEEEe
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQ-------TWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQ   75 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~   75 (126)
                      .|.+++++++||+|+++++++|++|.+|+.........       .+...+...+...+.         .+|.+++.++.
T Consensus        62 ~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~im~~~~~~v~  132 (330)
T 2v8q_E           62 ALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYL---------QDSFKPLVCIS  132 (330)
T ss_dssp             HHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBHHHHHHHHS---------SSSCCCCCCBC
T ss_pred             HHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccchhHHhhccHHHHHHHHh---------hcccCCceEeC
Confidence            35678999999999884499999999999643211110       011223444433222         26778899999


Q ss_pred             CCCCHHHHHHHHHhcCCCEEEEEcC-CCceEEEEeHHHHHHHHHH
Q 039385           76 VDSPLSEVIGKALTKHVHRVWVVDQ-QRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        76 ~~~~l~~~~~~m~~~~~~~lpVvd~-~~~lvGivs~~dil~~~~~  119 (126)
                      +++++.+|++.|.+++.+.+||+|+ +|+++|+||..|+++.+..
T Consensus       133 ~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~  177 (330)
T 2v8q_E          133 PNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKL  177 (330)
T ss_dssp             TTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHH
Confidence            9999999999999999999999998 8999999999999998754

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.54  E-value=2.4e-14  Score=98.77  Aligned_cols=92  Identities=21%  Similarity=0.270  Sum_probs=70.0

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||+|+++ +++|+++..|+.....       ..++.                ++|.+++.++.+++++.+
T Consensus        26 ~~~~~~~~~~pV~d~~~-~~~Giv~~~dl~~~~~-------~~~v~----------------~~m~~~~~~v~~~~~l~~   81 (282)
T 2yzq_A           26 LFKKYKVRSFPVVNKEG-KLVGIISVKRILVNPD-------EEQLA----------------MLVKRDVPVVKENDTLKK   81 (282)
T ss_dssp             ------CCEEEEECTTC-CEEEEEESSCC---------------------------------CCCBSCCCEEETTSBHHH
T ss_pred             HHHHcCCCeEEEEcCCC-cEEEEEEHHHHHhhhc-------cCCHH----------------HHcCCCCcEECCCCcHHH
Confidence            46788999999999877 9999999999963311       11222                256667899999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH-HHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR-VLR  118 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~-~~~  118 (126)
                      +++.|.+++.+.+||+|++|+++|++|..|+++ .+.
T Consensus        82 a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~  118 (282)
T 2yzq_A           82 AAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA  118 (282)
T ss_dssp             HHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT
T ss_pred             HHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHh
Confidence            999999999999999998899999999999998 654

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.53  E-value=5.4e-15  Score=104.05  Aligned_cols=104  Identities=13%  Similarity=0.241  Sum_probs=80.0

Q ss_pred             ccCCCCceeeEeeCCCce-----eEEEeeccccccCcHHHH--HhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeC
Q 039385            4 YKKPNVERNSISLGNGWR-----LIGTFSASDLRGCHYAVL--QTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQV   76 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~-----l~G~is~~dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~   76 (126)
                      |.+++++.+||+|+++ .     ++|++|.+|+........  ..+...++.+++             ..|.+++.++.+
T Consensus       140 m~~~~~~~lpVvd~~~-~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~~~-------------~~m~~~~~~v~~  205 (323)
T 3t4n_C          140 MLESRSGRIPLIDQDE-ETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLN-------------IITQDNMKSCQM  205 (323)
T ss_dssp             HHHHTCSEEEEEEECT-TTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGGTT-------------CSBCTTCCCBCT
T ss_pred             HHhCCeeEEEEEecCC-CCCccceEEEecHHHHHHHHHhcCCchhhhhCcHHHcC-------------CCCCCCcEEECC
Confidence            5678899999999876 4     999999999964322111  111111222210             126678999999


Q ss_pred             CCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385           77 DSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        77 ~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~  121 (126)
                      ++++.+|++.|.+++++.+||+|++|+++|+||..|+++.+....
T Consensus       206 ~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~  250 (323)
T 3t4n_C          206 TTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI  250 (323)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTH
T ss_pred             CCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhch
Confidence            999999999999999999999999999999999999999876543

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.53  E-value=2e-14  Score=107.45  Aligned_cols=94  Identities=19%  Similarity=0.309  Sum_probs=79.9

Q ss_pred             cccCCCCceeeEeeC--CCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCcccccc-ceEEEeCCCC
Q 039385            3 WYKKPNVERNSISLG--NGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQR-ELLTCQVDSP   79 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~--~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~-~~~~v~~~~~   79 (126)
                      .+.+++++.+||+|+  ++ +++|++|.+|++...      ....++.++|                ++ ++++++++++
T Consensus       138 ~m~~~~~s~~pVvd~g~~~-~lvGiVt~rDl~~~~------~~~~~V~~vM----------------~~~~~vtv~~~~~  194 (511)
T 3usb_A          138 LMGKYRISGVPVVNNLDER-KLVGIITNRDMRFIQ------DYSIKISDVM----------------TKEQLITAPVGTT  194 (511)
T ss_dssp             HHHHHCCSEEEEESCTTTC-BEEEEEEHHHHTTCC------CSSSBHHHHC----------------CCCCCCCEETTCC
T ss_pred             HHHHcCCcEEEEEecCCCC-EEEEEEEehHhhhhc------cCCCcHHHhc----------------ccCCCEEECCCCC
Confidence            356788999999997  66 999999999996421      1234666644                55 8899999999


Q ss_pred             HHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           80 LSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        80 l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      +.+++++|.+++++.+||+|++|+++|+||+.|+++.+..
T Consensus       195 l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          195 LSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             HHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence            9999999999999999999999999999999999998754

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.47  E-value=3.9e-15  Score=111.11  Aligned_cols=95  Identities=18%  Similarity=0.138  Sum_probs=0.0

Q ss_pred             cccCCCCceeeEeeCC---CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccc--eEEEeCC
Q 039385            3 WYKKPNVERNSISLGN---GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRE--LLTCQVD   77 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~---~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~--~~~v~~~   77 (126)
                      .|.+++++.+||+|++   + +++|+||.+|++.. .    .....++.++|                +++  +++++++
T Consensus       122 ~m~~~~~s~~pVvd~~~~~g-~lvGiVt~~Dl~~~-~----~~~~~~V~diM----------------~~~~~~~tv~~~  179 (503)
T 1me8_A          122 ISQRTTHNTVAVTDDGTPHG-VLLGLVTQRDYPID-L----TQTETKVSDMM----------------TPFSKLVTAHQD  179 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHcCceEEEEEECCCcCC-eEEEEEEHHHHHhh-h----ccccCcHHHHh----------------CCCCCCEEEcCC
Confidence            4678899999999986   6 99999999999743 1    11223455544                445  8999999


Q ss_pred             CCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           78 SPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        78 ~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      +++.+++++|.+++++.+||+|++|+++|+||+.||++.+..
T Consensus       180 ~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~  221 (503)
T 1me8_A          180 TKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVC  221 (503)
T ss_dssp             ------------------------------------------
T ss_pred             CcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhc
Confidence            999999999999999999999999999999999999998754

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.47  E-value=2e-14  Score=107.76  Aligned_cols=99  Identities=12%  Similarity=0.131  Sum_probs=76.6

Q ss_pred             cccCCCCceeeEee-CCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            3 WYKKPNVERNSISL-GNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         3 ~~~~~~~~~~pVvd-~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      .|.+++++.+||+| +++ +++|+||.+||........ .....++.+                +|.++++++.+++++.
T Consensus       410 ~m~~~~~~~lpVvd~~~g-~lvGiVt~~Dll~~l~~~~-~~~~~~V~~----------------im~~~~~~v~~~~~l~  471 (527)
T 3pc3_A          410 LMKKHRVDQLPVVDQDDG-SVLGVVGQETLITQIVSMN-RQQSDPAIK----------------ALNKRVIRLNESEILG  471 (527)
T ss_dssp             HHHHHTCSEEEEECTTTC-CEEEEEEHHHHHHHHHHHC-CCTTSBGGG----------------GEETTCCEEETTSBHH
T ss_pred             HHHHcCCCeEEEEECCCC-EEEEEEEHHHHHHHHHhcc-CcCCCcHHH----------------HhcCCCeEECCCCcHH
Confidence            46778999999999 666 9999999999953311110 001122333                6777999999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCC----CceEEEEeHHHHHHHHHHhh
Q 039385           82 EVIGKALTKHVHRVWVVDQQ----RLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~----~~lvGivs~~dil~~~~~~~  121 (126)
                      +++++|.++++  +||+|++    |+++|+||+.||++.+.+..
T Consensus       472 ~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          472 KLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             HHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred             HHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence            99999977664  7999974    89999999999999998754

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.43  E-value=1.1e-14  Score=108.29  Aligned_cols=92  Identities=23%  Similarity=0.331  Sum_probs=0.0

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccc-c-ceEEEeCCCCH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQ-R-ELLTCQVDSPL   80 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~-~-~~~~v~~~~~l   80 (126)
                      .|.+++++.+||+| ++ +++|++|.+|++....      ...++.++|                + + +++++++++++
T Consensus       113 ~m~~~~~s~~pVvd-~g-~lvGIVt~rDl~~~~~------~~~~V~~vM----------------tp~~~~vtv~~~~~l  168 (490)
T 4avf_A          113 MAREYGFSGFPVVE-QG-ELVGIVTGRDLRVKPN------AGDTVAAIM----------------TPKDKLVTAREGTPL  168 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhCCCEEEEEE-CC-EEEEEEEhHHhhhccc------cCCcHHHHh----------------ccCCCCEEECCCCcH
Confidence            56788999999999 66 9999999999963211      123555654                4 2 68999999999


Q ss_pred             HHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           81 SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        81 ~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      .+++++|.+++++.+||+|++|+++|+||+.|+++...
T Consensus       169 ~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          169 EEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence            99999999999999999999999999999999999753

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.42  E-value=8.1e-13  Score=98.30  Aligned_cols=93  Identities=18%  Similarity=0.257  Sum_probs=77.6

Q ss_pred             ccCCCCceeeEee--CCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCcccccc-ceEEEeCCCCH
Q 039385            4 YKKPNVERNSISL--GNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQR-ELLTCQVDSPL   80 (126)
Q Consensus         4 ~~~~~~~~~pVvd--~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~-~~~~v~~~~~l   80 (126)
                      |.+++++.+||+|  +++ +++|++|.+|+.....      ...++.                ++|++ +++++++++++
T Consensus       116 m~~~~~~~~pVvd~~~~~-~lvGivt~~Dl~~~~~------~~~~v~----------------~im~~~~~~~v~~~~~l  172 (491)
T 1zfj_A          116 MQRYRISGVPIVETLANR-KLVGIITNRDMRFISD------YNAPIS----------------EHMTSEHLVTAAVGTDL  172 (491)
T ss_dssp             HHHTTCSEEEEESCTTTC-BEEEEEEHHHHHHCSC------SSSBTT----------------TSCCCSCCCCEETTCCH
T ss_pred             HHHcCCCEEEEEEeCCCC-EEEEEEEHHHHhhhcc------CCCcHH----------------HHcCCCCCEEECCCCCH
Confidence            5567899999999  666 9999999999963310      111222                26676 88999999999


Q ss_pred             HHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           81 SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        81 ~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      .++++.|.+++++.+||+|++|+++|+||+.|+++.+..
T Consensus       173 ~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          173 ETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             HHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence            999999999999999999999999999999999998874

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.42  E-value=3.1e-13  Score=95.43  Aligned_cols=107  Identities=7%  Similarity=0.057  Sum_probs=78.2

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHH---------hhhhhcHHHHHHHHhcCCCCCCCccccccce--E
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQ---------TWLPLTALEFTQQVLTSPLFSESNTTQQREL--L   72 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~--~   72 (126)
                      +.+++++++||+|++.++++|+++.+|+.........         .....+...+...+.         .+|.+++  +
T Consensus        50 ~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~---------~im~~~~~~~  120 (334)
T 2qrd_G           50 LTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVER---------KIGAIPPETI  120 (334)
T ss_dssp             HHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGSCBHHHHHHHHH---------HHTCSCSSCC
T ss_pred             HHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHhhhchhhHHHHHH---------hhccCCCcee
Confidence            4578899999999873499999999999643211100         001223333322111         1455566  8


Q ss_pred             EEeCCCCHHHHHHHHHhcCCCEEEEEcCCCc-----eEEEEeHHHHHHHHHH
Q 039385           73 TCQVDSPLSEVIGKALTKHVHRVWVVDQQRL-----LLGLVSLTDMIRVLRT  119 (126)
Q Consensus        73 ~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~-----lvGivs~~dil~~~~~  119 (126)
                      ++.+++++.++++.|.+++.+++||+|+++.     ++|+||..|+++.+..
T Consensus       121 ~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~  172 (334)
T 2qrd_G          121 YVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISM  172 (334)
T ss_dssp             CBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHH
T ss_pred             eeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHh
Confidence            9999999999999999999999999997654     9999999999998764

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.42  E-value=1.7e-14  Score=107.52  Aligned_cols=92  Identities=18%  Similarity=0.227  Sum_probs=65.8

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccc-c-ceEEEeCCCCH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQ-R-ELLTCQVDSPL   80 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~-~-~~~~v~~~~~l   80 (126)
                      .+.+++++.+||+|+++ +++|++|.+|++....      ...++.+                +|+ + +++++++++++
T Consensus       114 ~m~~~~~s~~PVvd~~~-~lvGiVt~rDL~~~~~------~~~~v~d----------------iM~p~~~~vtv~~~~~l  170 (496)
T 4fxs_A          114 LTHYHGFAGFPVVTENN-ELVGIITGRDVRFVTD------LTKSVAA----------------VMTPKERLATVKEGATG  170 (496)
T ss_dssp             HHTSSCCCEEEEECSSS-BEEEEEEHHHHTTCCC------TTSBGGG----------------TSEEGGGCCEEECC---
T ss_pred             HHHHcCCcEEEEEccCC-EEEEEEEHHHHhhccc------CCCcHHH----------------HhcCCCCCEEECCCCCH
Confidence            46788999999999877 9999999999973311      1223334                455 3 58999999999


Q ss_pred             HHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           81 SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        81 ~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      .+++++|.+++++.+||+|++|+++|+||+.|+++..
T Consensus       171 ~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          171 AEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             -CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred             HHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence            9999999999999999999999999999999999864

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.41  E-value=1.8e-14  Score=107.27  Aligned_cols=95  Identities=17%  Similarity=0.292  Sum_probs=6.0

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCcccccc--ceEEEeCCCCH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQR--ELLTCQVDSPL   80 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~--~~~~v~~~~~l   80 (126)
                      .|.+++++.+||+|+++ +++|+||.+|++...  .    ...++.++                |++  ++.++.+++++
T Consensus       120 ~m~~~~~~~~pVvd~~~-~lvGivt~~Dl~~~~--~----~~~~v~~i----------------m~~~~~~~~v~~~~~l  176 (494)
T 1vrd_A          120 LMAEYKIGGLPVVDEEG-RLVGLLTNRDVRFEK--N----LSKKIKDL----------------MTPREKLIVAPPDISL  176 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHcCceEEEEEcCCC-EEEEEEEHHHHHhhc--C----CCCcHHHH----------------hCCCCCCeEECCCCCH
Confidence            46788999999999877 999999999997421  1    12244444                455  78999999999


Q ss_pred             HHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           81 SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        81 ~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      .+++++|.+++++.+||+|++|+++|+||+.|+++.+...
T Consensus       177 ~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          177 EKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             --------------------------------CHHHHTCT
T ss_pred             HHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccc
Confidence            9999999999999999999999999999999999987643

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.40  E-value=2.3e-14  Score=106.28  Aligned_cols=92  Identities=15%  Similarity=0.106  Sum_probs=0.0

Q ss_pred             cccCCCCceeeEeeCC--CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCH
Q 039385            3 WYKKPNVERNSISLGN--GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPL   80 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~--~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l   80 (126)
                      .+.+++++.+||+|+.  +++|+|++|.+|++..   .    ...++.++|                ++++++++++.++
T Consensus       163 l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~---d----~~~~V~evM----------------T~~lvt~~~~~~l  219 (556)
T 4af0_A          163 IKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ---D----AETPIKSVM----------------TTEVVTGSSPITL  219 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhCCCccccccccCcCCEEEEEEeccccccc---c----cceEhhhhc----------------ccceEEecCCCCH
Confidence            5678999999999873  2499999999999752   1    123566654                5688999999999


Q ss_pred             HHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           81 SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        81 ~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      ++|.++|.++++..+||||++++++|+||+.|+++.-
T Consensus       220 eeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          220 EKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             -------------------------------------
T ss_pred             HHHHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence            9999999999999999999999999999999998764

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.27  E-value=1.6e-11  Score=68.55  Aligned_cols=47  Identities=15%  Similarity=0.201  Sum_probs=43.6

Q ss_pred             eEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        71 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++++.+++++.+|+++|.++++..+||+| +|+++|++|..|+++.+.
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~   48 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVV   48 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            57899999999999999999999999998 689999999999987653

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.27  E-value=1.5e-11  Score=79.61  Aligned_cols=98  Identities=10%  Similarity=0.112  Sum_probs=52.0

Q ss_pred             eeEEEeeccccccCcHHH-HHhhhhhcHHHHHHHHhcCCCCCCCccccc--cceEEEeCCCCHHHHHHHHHhcCCCEEEE
Q 039385           21 RLIGTFSASDLRGCHYAV-LQTWLPLTALEFTQQVLTSPLFSESNTTQQ--RELLTCQVDSPLSEVIGKALTKHVHRVWV   97 (126)
Q Consensus        21 ~l~G~is~~dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpV   97 (126)
                      ++-+.+|..+|+.+.... ........-.+++..+......++++ +|+  .++.++.+++++.+|++.|.++++..+||
T Consensus         2 ~~~~~~t~~el~~l~~~~~~~g~l~~~e~~~i~~~~~l~~~~v~d-iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pV   80 (172)
T 3lhh_A            2 HLDDNVTQEDIQAMLQEGSSAGVIEHNEHAMVKNVFRLDERTISS-LMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPV   80 (172)
T ss_dssp             -----------------------------------------CTTT-TSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEE
T ss_pred             CccccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCCHHH-hCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEE
Confidence            566778888886653221 11111222334444444444455544 777  67899999999999999999999999999


Q ss_pred             EcCC-CceEEEEeHHHHHHHHHH
Q 039385           98 VDQQ-RLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        98 vd~~-~~lvGivs~~dil~~~~~  119 (126)
                      +|++ ++++|+||..|+++.+..
T Consensus        81 vd~~~~~lvGivt~~dl~~~~~~  103 (172)
T 3lhh_A           81 CRNNVDDMVGIISAKQLLSESIA  103 (172)
T ss_dssp             ESSSTTSEEEEEEHHHHHHHHHT
T ss_pred             EeCCCCeEEEEEEHHHHHHHHhh
Confidence            9987 899999999999998763

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.26  E-value=1.1e-13  Score=103.55  Aligned_cols=96  Identities=15%  Similarity=0.096  Sum_probs=57.8

Q ss_pred             cccCCCCceeeEeeCC--CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCcccccc--ceEEEeCCC
Q 039385            3 WYKKPNVERNSISLGN--GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQR--ELLTCQVDS   78 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~--~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~--~~~~v~~~~   78 (126)
                      .|.+++++.+||+|++  +++++|++|.+|+......    ....++.+                +|.+  ++.++.+++
T Consensus       133 ~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~----~~~~~v~~----------------vm~~~~~~~tv~~~~  192 (514)
T 1jcn_A          133 AKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEK----DHTTLLSE----------------VMTPRIELVVAPAGV  192 (514)
T ss_dssp             --------CEESCC--------CCEECTTTTC------------------------------------CCBCCCCEETTC
T ss_pred             HHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhc----cCCCCHHH----------------HhCCCCCCeEECCCC
Confidence            4678899999999983  2399999999999754210    11224444                4455  789999999


Q ss_pred             CHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           79 PLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        79 ~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.+++++|.+++.+.+||+|++|+++|+||+.|+++.+.
T Consensus       193 ~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          193 TLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             CSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred             CHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence            9999999999999999999999999999999999887543

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.26  E-value=5e-13  Score=99.42  Aligned_cols=90  Identities=17%  Similarity=0.334  Sum_probs=0.5

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .+.+++++.+||+|+ + +++|+++.+|+..   .     ...++.++                |+++++++.+++++.+
T Consensus       118 ~~~~~~~~~~pVvd~-~-~lvGivt~~Dl~~---~-----~~~~v~~i----------------m~~~~~~v~~~~~l~e  171 (486)
T 2cu0_A          118 LMEKHGIDGLPVVED-E-KVVGIITKKDIAA---R-----EGKLVKEL----------------MTKEVITVPESIEVEE  171 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHcCCcEEEEEEC-C-EEEEEEEHHHhcc---C-----CCCCHHHH----------------ccCCCeEECCcCcHHH
Confidence            456788999999997 6 9999999999964   1     12244444                4557889999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      +++.|.+++++.+||+|++|+++|+||+.|+++...
T Consensus       172 al~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          172 ALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             -----------------------------------C
T ss_pred             HHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence            999999999999999999999999999999999864

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.23  E-value=8e-12  Score=80.62  Aligned_cols=53  Identities=25%  Similarity=0.333  Sum_probs=49.7

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      ++|+++++++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+++..
T Consensus        22 diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~   74 (170)
T 4esy_A           22 DILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGS   74 (170)
T ss_dssp             GGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGT
T ss_pred             HhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHH
Confidence            38888999999999999999999999999999999999999999999998653

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.13  E-value=1.9e-10  Score=72.37  Aligned_cols=55  Identities=13%  Similarity=0.151  Sum_probs=50.4

Q ss_pred             cccc--ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHHHHh
Q 039385           66 TQQR--ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        66 ~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~~~~  120 (126)
                      +|++  ++.++.+++++.+|++.|.+++...+||+|++ |+++|+||..|+++.+...
T Consensus        28 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~   85 (148)
T 3lv9_A           28 IMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINE   85 (148)
T ss_dssp             TSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHH
T ss_pred             ccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence            6776  89999999999999999999999999999987 8999999999999987543

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.12  E-value=1.1e-10  Score=74.56  Aligned_cols=51  Identities=16%  Similarity=0.132  Sum_probs=47.0

Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      .++.++.+++|+.+|+..|.++++.++||+|++|+++|+||..|+++++..
T Consensus        25 ~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~   75 (156)
T 3k6e_A           25 KNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQME   75 (156)
T ss_dssp             TSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHH
T ss_pred             hHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhh
Confidence            578999999999999999999999999999988999999999999988754

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.07  E-value=3.1e-10  Score=77.06  Aligned_cols=56  Identities=14%  Similarity=0.191  Sum_probs=52.0

Q ss_pred             ccccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           64 NTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        64 ~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      .++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|+||..|+++.+..
T Consensus        10 ~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~   65 (245)
T 3l2b_A           10 EDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMD   65 (245)
T ss_dssp             GGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHC
T ss_pred             HHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            34788899999999999999999999999999999988999999999999998754

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.06  E-value=5.6e-10  Score=70.28  Aligned_cols=54  Identities=17%  Similarity=0.269  Sum_probs=50.3

Q ss_pred             cccc--ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           66 TQQR--ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        66 ~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      +|.+  ++.++.+++++.+|++.|.+++...+||+|++|+++|+||..|+++.+.+
T Consensus        33 im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   88 (149)
T 3k2v_A           33 IMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDT   88 (149)
T ss_dssp             TSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCS
T ss_pred             HhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhc
Confidence            6777  89999999999999999999999999999989999999999999987753

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.06  E-value=2.8e-10  Score=69.09  Aligned_cols=54  Identities=15%  Similarity=0.303  Sum_probs=50.2

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      +|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+..
T Consensus         6 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~   59 (122)
T 3kpb_A            6 ILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ   59 (122)
T ss_dssp             HCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT
T ss_pred             hhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            567788999999999999999999999999999999999999999999998654

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.04  E-value=7.3e-10  Score=75.98  Aligned_cols=56  Identities=16%  Similarity=0.201  Sum_probs=51.5

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC--CceEEEEeHHHHHHHHHHh
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ--RLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~--~~lvGivs~~dil~~~~~~  120 (126)
                      ++|+++++++.+++++.+|.++|.+++++.+||||++  ++++|+||+.||++++...
T Consensus        17 diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~   74 (250)
T 2d4z_A           17 DIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRR   74 (250)
T ss_dssp             SSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred             HhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHh
Confidence            4889999999999999999999999999999999964  6899999999999987654

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.02  E-value=1.1e-09  Score=68.18  Aligned_cols=55  Identities=15%  Similarity=0.178  Sum_probs=50.5

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCC--ceEEEEeHHHHHHHHHH
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQR--LLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~--~lvGivs~~dil~~~~~  119 (126)
                      ++|.+++.++.+++++.+|++.|.+++.+.+||+|+++  +++|+||..|+++.+.+
T Consensus         9 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~   65 (141)
T 2rih_A            9 ELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ   65 (141)
T ss_dssp             GGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHT
T ss_pred             HHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhc
Confidence            37778899999999999999999999999999999888  99999999999998654

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.01  E-value=2e-10  Score=73.08  Aligned_cols=70  Identities=11%  Similarity=0.204  Sum_probs=56.6

Q ss_pred             HHHHHHHhcCCCCCCCcccccc--ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCC-ceEEEEeHHHHHHHHH
Q 039385           48 LEFTQQVLTSPLFSESNTTQQR--ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQR-LLLGLVSLTDMIRVLR  118 (126)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~-~lvGivs~~dil~~~~  118 (126)
                      .+++.........++++ +|++  ++.++.+++++.+|++.|.++++..+||+|+++ +++|+||..|+++.+.
T Consensus        26 ~~~i~~~~~l~~~~v~d-iM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~   98 (156)
T 3oi8_A           26 LLRLEKVLDFSDLEVRD-AMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMF   98 (156)
T ss_dssp             HHHHHHHHHHTTCBGGG-TCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSS
T ss_pred             HHHHHHHhccCCCCHhh-eeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH
Confidence            34555555555555544 6765  789999999999999999999999999999874 9999999999998753

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.01  E-value=2e-09  Score=69.80  Aligned_cols=70  Identities=14%  Similarity=0.076  Sum_probs=56.9

Q ss_pred             HHHHHHhcCCCCCCCccccc--cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHHHH
Q 039385           49 EFTQQVLTSPLFSESNTTQQ--RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~~~  119 (126)
                      +++.........++++ +|+  .+++++.+++++.+|++.|.++++..+||+|++ ++++|+||..|+++.+..
T Consensus        25 ~~i~~~l~l~~~~v~d-iM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~   97 (173)
T 3ocm_A           25 NMVSGVLTLAERSIRS-IMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLIT   97 (173)
T ss_dssp             HHHHHHHHHTTSCSTT-TSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCHHH-hCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhc
Confidence            4444444455555544 675  468999999999999999999999999999976 899999999999998754

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.01  E-value=7.6e-10  Score=70.56  Aligned_cols=55  Identities=22%  Similarity=0.247  Sum_probs=50.7

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++|.+++.++.+++++.+|+..|.+++...+||+|++|+++|+||..|+++.+..
T Consensus         9 dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~   63 (160)
T 2o16_A            9 DMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQES   63 (160)
T ss_dssp             GTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             HHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHH
Confidence            3777789999999999999999999999999999988999999999999988753

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.00  E-value=1.9e-09  Score=69.02  Aligned_cols=51  Identities=20%  Similarity=0.397  Sum_probs=47.8

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+...
T Consensus        36 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~   86 (165)
T 3fhm_A           36 DVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQ   86 (165)
T ss_dssp             CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhc
Confidence            689999999999999999999999999999999999999999999987653

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.00  E-value=1.2e-09  Score=66.46  Aligned_cols=53  Identities=15%  Similarity=0.258  Sum_probs=48.9

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      +|.+++.++.+++++.+|++.|.+++.+.+||+| +|+++|+||..|+++.+.+
T Consensus         6 ~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~   58 (125)
T 1pbj_A            6 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAE   58 (125)
T ss_dssp             HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             hcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhc
Confidence            5677899999999999999999999999999999 8999999999999987654

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.00  E-value=8.4e-10  Score=69.36  Aligned_cols=50  Identities=16%  Similarity=0.172  Sum_probs=47.0

Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      .++.++.+++++.+|++.|.+++...+||+|++|+++|+||..|+++.+.
T Consensus        25 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~   74 (150)
T 3lqn_A           25 EKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGIL   74 (150)
T ss_dssp             GGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTB
T ss_pred             CceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999998874

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.00  E-value=1.2e-09  Score=67.68  Aligned_cols=52  Identities=17%  Similarity=0.287  Sum_probs=48.1

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      ++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.
T Consensus        11 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~   62 (138)
T 2yzi_A           11 VYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRR   62 (138)
T ss_dssp             GTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             HHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Confidence            3777889999999999999999999999999999988999999999999843

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.97  E-value=1.4e-09  Score=67.16  Aligned_cols=51  Identities=6%  Similarity=0.200  Sum_probs=46.6

Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC-CCceEEEEeHHHHHHHHHH
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ-QRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~~~lvGivs~~dil~~~~~  119 (126)
                      .++.++.+++++.+|++.|.++++..+||+++ +|+++|+||..|+++.+..
T Consensus        12 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~   63 (130)
T 3hf7_A           12 NEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE   63 (130)
T ss_dssp             GGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTS
T ss_pred             HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhc
Confidence            46899999999999999999999999999975 5899999999999998754

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.97  E-value=2.1e-09  Score=71.49  Aligned_cols=68  Identities=10%  Similarity=0.039  Sum_probs=58.2

Q ss_pred             HHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHHHHHhc---CCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           48 LEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKALTK---HVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~~m~~~---~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      .+.+..+..++..++++ +|+++++++++++++.+|++.|.++   +++.+||+|++|+++|+||..|++..
T Consensus        42 ~~~i~~~l~~~~~~v~~-iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~  112 (205)
T 3kxr_A           42 RQRFELYDQYSENEIGR-YTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH  112 (205)
T ss_dssp             HHHHHHHHHSCTTCGGG-GCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS
T ss_pred             HHHHHHHhCCCcchHHh-hccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC
Confidence            44555566677666655 8888999999999999999999987   89999999999999999999999864

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.97  E-value=2.4e-09  Score=65.90  Aligned_cols=54  Identities=17%  Similarity=0.349  Sum_probs=49.7

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++|.+++.++.+++++.+|++.|.+++.+.+||+| +|+++|+||..|+++.+..
T Consensus         8 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~   61 (133)
T 2ef7_A            8 EYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGK   61 (133)
T ss_dssp             GTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHT
T ss_pred             HhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhc
Confidence            37777899999999999999999999999999999 8999999999999987654

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.96  E-value=1.2e-09  Score=69.40  Aligned_cols=53  Identities=15%  Similarity=0.122  Sum_probs=48.6

Q ss_pred             cccc--ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           66 TQQR--ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        66 ~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      +|.+  ++.++.+++++.+|++.|.++++..+||+|++|+++|+||..|+++.+.
T Consensus        19 im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~   73 (159)
T 1yav_A           19 FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIF   73 (159)
T ss_dssp             HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHB
T ss_pred             HhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhh
Confidence            4555  7899999999999999999999999999998899999999999998764

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.96  E-value=1.5e-09  Score=67.11  Aligned_cols=54  Identities=20%  Similarity=0.410  Sum_probs=49.3

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHH-HHHHH
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDM-IRVLR  118 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~di-l~~~~  118 (126)
                      ++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+ ++.+.
T Consensus        12 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   66 (138)
T 2p9m_A           12 DVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIR   66 (138)
T ss_dssp             GTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTT
T ss_pred             HhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            3777789999999999999999999999999999988999999999999 87653

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.96  E-value=1.7e-09  Score=67.24  Aligned_cols=54  Identities=20%  Similarity=0.418  Sum_probs=49.9

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      .|.+++.++.+++++.+|++.|.+++...+||+|++|+++|+||..|+++.+.+
T Consensus        16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   69 (144)
T 2nyc_A           16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG   69 (144)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcc
Confidence            566788999999999999999999999999999988999999999999987654

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.96  E-value=2.7e-09  Score=67.87  Aligned_cols=51  Identities=22%  Similarity=0.375  Sum_probs=47.2

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      +|+++ +++.+++++.+|++.|.+++...+||+|++|+++|+||..|+++.+
T Consensus        22 im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~   72 (159)
T 3fv6_A           22 FQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRAS   72 (159)
T ss_dssp             SCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             HcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHh
Confidence            66654 5999999999999999999999999999899999999999999976

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.96  E-value=1e-09  Score=67.55  Aligned_cols=54  Identities=13%  Similarity=0.256  Sum_probs=48.6

Q ss_pred             ccc--cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHHHH
Q 039385           66 TQQ--RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        66 ~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~~~  119 (126)
                      +|+  .++.++.+++++.+|++.|.+++...+||+|++ |+++|+||..|+++.+..
T Consensus        11 iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~   67 (130)
T 3i8n_A           11 VMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQS   67 (130)
T ss_dssp             TSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHT
T ss_pred             CCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhc
Confidence            666  456799999999999999999999999999987 899999999999998754

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.94  E-value=1.6e-09  Score=66.48  Aligned_cols=53  Identities=11%  Similarity=0.159  Sum_probs=49.1

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++|.+++.++.+++++.+|++.|.+++.+.+||+|+ |+++|+||..|+++.+.
T Consensus         9 ~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~   61 (128)
T 3gby_A            9 YLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRK   61 (128)
T ss_dssp             GGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCS
T ss_pred             HhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHh
Confidence            377888999999999999999999999999999997 99999999999997654

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.93  E-value=2.5e-09  Score=67.95  Aligned_cols=53  Identities=23%  Similarity=0.417  Sum_probs=48.7

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC--CCceEEEEeHHHHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ--QRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--~~~lvGivs~~dil~~~~  118 (126)
                      +|.+++.++.+++++.+|++.|.+++.+.+||+|+  +|+++|+||..|+++.+.
T Consensus        18 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~   72 (164)
T 2pfi_A           18 FMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQ   72 (164)
T ss_dssp             HCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred             HcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHH
Confidence            56678899999999999999999999999999996  789999999999998774

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.93  E-value=6.4e-10  Score=68.21  Aligned_cols=53  Identities=15%  Similarity=0.298  Sum_probs=47.4

Q ss_pred             cccc--ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHHH
Q 039385           66 TQQR--ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        66 ~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~~  118 (126)
                      +|++  ++.++.+++++.+|++.|.+++...+||+|++ |+++|+||..|+++.+.
T Consensus         8 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~   63 (127)
T 3nqr_A            8 IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR   63 (127)
T ss_dssp             HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGS
T ss_pred             hcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh
Confidence            4553  48999999999999999999999999999987 89999999999987653

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.92  E-value=1.7e-09  Score=68.33  Aligned_cols=53  Identities=19%  Similarity=0.138  Sum_probs=49.0

Q ss_pred             cccc--ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           66 TQQR--ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        66 ~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      +|.+  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+.
T Consensus        16 im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~   70 (157)
T 2emq_A           16 FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAIL   70 (157)
T ss_dssp             TCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSB
T ss_pred             hccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence            6665  8899999999999999999999999999998899999999999998764

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.92  E-value=3.3e-09  Score=69.03  Aligned_cols=54  Identities=15%  Similarity=0.171  Sum_probs=50.0

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++|.+++.++.+++++.+|+++|.+++.+.+||+|++|+++|+||..|+++.+.
T Consensus        13 ~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~   66 (184)
T 1pvm_A           13 KIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI   66 (184)
T ss_dssp             GTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTG
T ss_pred             HhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Confidence            377788999999999999999999999999999998899999999999998764

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.92  E-value=9e-10  Score=67.78  Aligned_cols=53  Identities=13%  Similarity=0.298  Sum_probs=47.4

Q ss_pred             ccc--cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHHH
Q 039385           66 TQQ--RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        66 ~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~~  118 (126)
                      +|+  .++.++.+++++.+|++.|.+++..++||+|++ |+++|+||..|+++.+.
T Consensus        10 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~   65 (129)
T 3jtf_A           10 IMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML   65 (129)
T ss_dssp             HCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT
T ss_pred             hCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc
Confidence            445  577899999999999999999999999999975 89999999999987653

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.91  E-value=5.1e-09  Score=66.38  Aligned_cols=53  Identities=21%  Similarity=0.448  Sum_probs=49.2

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCE-EEEEcCCCceEEEEeHHHHHHHHH
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHR-VWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~-lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++|.+++.++.+++++.+|++.|.+++... +||+|++ +++|+||..|+++.+.
T Consensus        20 ~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~   73 (157)
T 1o50_A           20 KLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSG   73 (157)
T ss_dssp             TSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHH
T ss_pred             hcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHh
Confidence            378889999999999999999999999999 9999977 9999999999998764

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.91  E-value=9.2e-10  Score=68.37  Aligned_cols=53  Identities=11%  Similarity=0.223  Sum_probs=47.9

Q ss_pred             ccc--cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHHH
Q 039385           66 TQQ--RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        66 ~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~~  118 (126)
                      +|+  .++.++.+++++.+|++.|.++++..+||+|++ |+++|+||..|+++.+.
T Consensus         8 iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~   63 (136)
T 3lfr_A            8 IMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLIL   63 (136)
T ss_dssp             HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGG
T ss_pred             ccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH
Confidence            444  578999999999999999999999999999987 79999999999998764

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.88  E-value=1.9e-09  Score=66.38  Aligned_cols=50  Identities=8%  Similarity=0.096  Sum_probs=46.3

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus        13 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~   62 (133)
T 1y5h_A           13 IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVI   62 (133)
T ss_dssp             HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHH
T ss_pred             HhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHH
Confidence            55668899999999999999999999999999988899999999999984

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.87  E-value=2.7e-09  Score=67.43  Aligned_cols=51  Identities=20%  Similarity=0.303  Sum_probs=46.5

Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEE-cC-CCceEEEEeHHHHHHHHHHh
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVV-DQ-QRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVv-d~-~~~lvGivs~~dil~~~~~~  120 (126)
                      ++.++.+++++.+|++.|.++++..+||+ |+ +|+++|+||..|+++.+...
T Consensus        31 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~   83 (153)
T 3oco_A           31 SMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID   83 (153)
T ss_dssp             GCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH
T ss_pred             heEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC
Confidence            78999999999999999999999999999 65 48999999999999987643

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.85  E-value=4.1e-09  Score=66.00  Aligned_cols=51  Identities=20%  Similarity=0.315  Sum_probs=47.2

Q ss_pred             cccc--ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           66 TQQR--ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        66 ~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      +|.+  ++.++.+++++.+|++.|.+++...+||+|++|+++|+||..|+++.
T Consensus        10 im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~   62 (152)
T 4gqw_A           10 FMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLAL   62 (152)
T ss_dssp             TSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTC
T ss_pred             ccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHh
Confidence            6766  78999999999999999999999999999988999999999999853

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.83  E-value=3e-09  Score=68.51  Aligned_cols=50  Identities=20%  Similarity=0.286  Sum_probs=46.5

Q ss_pred             cccc--ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           66 TQQR--ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        66 ~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      +|.+  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus         9 im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~   60 (180)
T 3sl7_A            9 FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLA   60 (180)
T ss_dssp             HSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTC
T ss_pred             hcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHh
Confidence            4555  7899999999999999999999999999999999999999999985

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.82  E-value=6.1e-09  Score=64.27  Aligned_cols=48  Identities=15%  Similarity=0.275  Sum_probs=44.8

Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      +++.++.+++++.+|++.|.+++.+.+||+| +|+++|+||..|+++.+
T Consensus        17 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~   64 (135)
T 2rc3_A           17 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKS   64 (135)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHG
T ss_pred             CCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHH
Confidence            5789999999999999999999999999999 89999999999999743

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.78  E-value=1e-08  Score=66.39  Aligned_cols=49  Identities=24%  Similarity=0.234  Sum_probs=45.7

Q ss_pred             eEEE--eCCCCHHHHHHHHHhcCCCEEEEE--cCCCceEEEEeHHHHHHHHHH
Q 039385           71 LLTC--QVDSPLSEVIGKALTKHVHRVWVV--DQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        71 ~~~v--~~~~~l~~~~~~m~~~~~~~lpVv--d~~~~lvGivs~~dil~~~~~  119 (126)
                      +.++  .+++++.+|++.|.+++.+.+||+  |++|+++|+||..|+++.+..
T Consensus        25 ~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~   77 (185)
T 2j9l_A           25 LLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIEN   77 (185)
T ss_dssp             CCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHH
T ss_pred             eEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            7788  999999999999999999999999  788999999999999998764

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.77  E-value=2e-08  Score=69.93  Aligned_cols=63  Identities=21%  Similarity=0.293  Sum_probs=52.8

Q ss_pred             HHhcCCCCCCCccccccceEEEeCCCCHHHHHHHHHhc-----CCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           53 QVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKALTK-----HVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        53 ~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~~m~~~-----~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      .+..++..+++ .+|+++++++.+++++.+|++.|.++     +++.+||+|++|+++|+||..|++..
T Consensus       130 ~ll~~~~~~v~-~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~  197 (286)
T 2oux_A          130 ELLHYEDETAG-AIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN  197 (286)
T ss_dssp             HHTTSCTTBHH-HHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS
T ss_pred             HHhcCChHHHH-HhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC
Confidence            34444444443 38888999999999999999999987     88999999989999999999999864

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.76  E-value=6.5e-09  Score=69.39  Aligned_cols=53  Identities=11%  Similarity=0.191  Sum_probs=48.9

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      ..|.+++.++.+++++.+|++.|.+++...+||+|++++++|+||..|+.+.+
T Consensus        17 ~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~   69 (213)
T 1vr9_A           17 KWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD   69 (213)
T ss_dssp             GGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC
T ss_pred             HhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhc
Confidence            37788999999999999999999999999999999889999999999997654

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.73  E-value=1.7e-08  Score=75.70  Aligned_cols=57  Identities=18%  Similarity=0.187  Sum_probs=52.4

Q ss_pred             ccccccceEEEeCC-CCHHHHHHHHHhcCCCEEEEEc-CCCceEEEEeHHHHHHHHHHh
Q 039385           64 NTTQQRELLTCQVD-SPLSEVIGKALTKHVHRVWVVD-QQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        64 ~~~m~~~~~~v~~~-~~l~~~~~~m~~~~~~~lpVvd-~~~~lvGivs~~dil~~~~~~  120 (126)
                      .++|+++++++.++ +++.+|+++|.++++..+||+| ++++++|+||..||++.+...
T Consensus       387 ~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~  445 (527)
T 3pc3_A          387 AELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM  445 (527)
T ss_dssp             GGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH
T ss_pred             HHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc
Confidence            35888899999999 9999999999999999999999 789999999999999887653

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.71  E-value=6.8e-08  Score=60.99  Aligned_cols=50  Identities=22%  Similarity=0.248  Sum_probs=45.5

Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      +++.++.+++++.+|++.|.+++.+.+||++ +|+++|+||..|+++.+..
T Consensus        21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~   70 (157)
T 4fry_A           21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVL   70 (157)
T ss_dssp             CCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGG
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHh
Confidence            4678999999999999999999999999966 8999999999999988643

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.69  E-value=9e-08  Score=66.24  Aligned_cols=62  Identities=19%  Similarity=0.217  Sum_probs=52.6

Q ss_pred             HhcCCCCCCCccccccceEEEeCCCCHHHHHHHHHhc-----CCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           54 VLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKALTK-----HVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        54 ~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~~m~~~-----~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      +..+...+++ .+|+++++++.+++++.+|++.|.++     ++..+||+|++|+++|+||..|++..
T Consensus       129 ~l~~~~~~v~-~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~  195 (278)
T 2yvy_A          129 LARYEEDEAG-GLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA  195 (278)
T ss_dssp             HHHSCTTBGG-GTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS
T ss_pred             HHCCCcchHH-hhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC
Confidence            3444444444 48888999999999999999999887     78999999988999999999999864

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.54  E-value=2e-07  Score=69.13  Aligned_cols=63  Identities=19%  Similarity=0.213  Sum_probs=52.8

Q ss_pred             HHhcCCCCCCCccccccceEEEeCCCCHHHHHHHHHhc-----CCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           53 QVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKALTK-----HVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        53 ~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~~m~~~-----~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      .+.+++..+++ .+|+++++++++++++.++++.|.++     ++..+||+|++++++|+||.+|++..
T Consensus       148 ~~l~~~~~~v~-~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~  215 (473)
T 2zy9_A          148 ALARYEEDEAG-GLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA  215 (473)
T ss_dssp             HHHTSCTTBST-TTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS
T ss_pred             HHhcCCCCCHH-HhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC
Confidence            34445544444 48888999999999999999999886     57999999988999999999999864

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.37  E-value=6.8e-08  Score=73.94  Aligned_cols=55  Identities=18%  Similarity=0.124  Sum_probs=50.5

Q ss_pred             cccc--cceEEEeCCCCHHHHHHHHH-hcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           65 TTQQ--RELLTCQVDSPLSEVIGKAL-TKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        65 ~~m~--~~~~~v~~~~~l~~~~~~m~-~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++|+  +++.++++++++.++.+.|. +++.+.+||+|++++++|+||++|+++.+.+
T Consensus       457 diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~  514 (632)
T 3org_A          457 EIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQH  514 (632)
T ss_dssp             HHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTT
T ss_pred             HHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHH
Confidence            4777  78999999999999999999 7999999999998999999999999987654

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.35  E-value=5.4e-07  Score=67.25  Aligned_cols=49  Identities=14%  Similarity=0.176  Sum_probs=45.3

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMI  114 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil  114 (126)
                      .|..+++++.+++++.+++++|.++++..+||+|++++++|+||..|+.
T Consensus        94 ~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~  142 (496)
T 4fxs_A           94 GVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVR  142 (496)
T ss_dssp             --CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHT
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHh
Confidence            6778899999999999999999999999999999999999999999996

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.28  E-value=4.3e-08  Score=54.45  Aligned_cols=28  Identities=11%  Similarity=0.283  Sum_probs=24.5

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccc
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLR   32 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~   32 (126)
                      .|.+++++++||+|+ + +++|++|.+|+.
T Consensus        17 ~M~~~~i~~~~V~d~-~-~lvGIvT~~Di~   44 (70)
T 3ghd_A           17 ILSRNKAGSAVVMEG-D-EILGVVTERDIL   44 (70)
T ss_dssp             HHHHTTCSEEEEEET-T-EEEEEEEHHHHH
T ss_pred             HHHHcCCCEEEEEEC-C-EEEEEEEHHHHH
Confidence            367899999999984 5 899999999994

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.19  E-value=3.1e-06  Score=62.92  Aligned_cols=50  Identities=18%  Similarity=0.153  Sum_probs=47.3

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEc--CCCceEEEEeHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVD--QQRLLLGLVSLTDMIR  115 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~~~~lvGivs~~dil~  115 (126)
                      +|..+++++.+++++.++++.|.+++...+||+|  ++++++|+||..|++.
T Consensus        95 im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~  146 (491)
T 1zfj_A           95 GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRF  146 (491)
T ss_dssp             TTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred             cCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhh
Confidence            7788999999999999999999999999999999  7899999999999985

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.18  E-value=2.6e-06  Score=63.80  Aligned_cols=50  Identities=16%  Similarity=0.127  Sum_probs=46.4

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC--CCceEEEEeHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ--QRLLLGLVSLTDMIR  115 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--~~~lvGivs~~dil~  115 (126)
                      .|..+++++.+++++.+++++|.++++..+||+|+  +++++|+||..|+..
T Consensus       118 ~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~  169 (511)
T 3usb_A          118 GVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF  169 (511)
T ss_dssp             CSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT
T ss_pred             ccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh
Confidence            56678899999999999999999999999999998  899999999999863

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.15  E-value=2.8e-07  Score=68.64  Aligned_cols=50  Identities=22%  Similarity=0.209  Sum_probs=0.0

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      .|.++++++.+++++.++++.|.++++..+||+|++++++|+||..|+..
T Consensus       100 iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~  149 (494)
T 1vrd_A          100 GIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRF  149 (494)
T ss_dssp             --------------------------------------------------
T ss_pred             cCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHh
Confidence            67789999999999999999999999999999998899999999999975

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.01  E-value=7.6e-07  Score=66.53  Aligned_cols=49  Identities=22%  Similarity=0.216  Sum_probs=0.0

Q ss_pred             cccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC---CceEEEEeHHHHHH
Q 039385           67 QQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ---RLLLGLVSLTDMIR  115 (126)
Q Consensus        67 m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~---~~lvGivs~~dil~  115 (126)
                      |.++++++.+++++.++++.|.++++..+||+|++   ++++|+||..|++.
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~  154 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPI  154 (503)
T ss_dssp             ----------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHh
Confidence            77789999999999999999999999999999977   89999999999985

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.90  E-value=1.6e-06  Score=64.66  Aligned_cols=48  Identities=23%  Similarity=0.228  Sum_probs=0.0

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMI  114 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil  114 (126)
                      .|..+++++.+++++.+++++|.++++..+||+| +++++|+||..|+.
T Consensus        93 ~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~  140 (490)
T 4avf_A           93 AIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLR  140 (490)
T ss_dssp             -------------------------------------------------
T ss_pred             CcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhh
Confidence            6777889999999999999999999999999999 89999999999996

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.81  E-value=2.5e-06  Score=63.76  Aligned_cols=50  Identities=18%  Similarity=0.143  Sum_probs=0.0

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC---CCceEEEEeHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ---QRLLLGLVSLTDMIR  115 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~~~lvGivs~~dil~  115 (126)
                      -|..+++++.|+.++.+++++|.++++..+||+|+   +++++||||.+|+-.
T Consensus       143 g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf  195 (556)
T 4af0_A          143 GFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQF  195 (556)
T ss_dssp             -----------------------------------------------------
T ss_pred             CccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccc
Confidence            34557899999999999999999999999999985   579999999998743

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.74  E-value=2.3e-06  Score=64.08  Aligned_cols=52  Identities=10%  Similarity=0.158  Sum_probs=25.1

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC---CCceEEEEeHHHHHHH
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ---QRLLLGLVSLTDMIRV  116 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~~~lvGivs~~dil~~  116 (126)
                      +.|.+++.++.+++++.++++.|.+++++.+||+|+   +++++|+||..|+...
T Consensus       112 ~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~  166 (514)
T 1jcn_A          112 QGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFL  166 (514)
T ss_dssp             TTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC--
T ss_pred             hccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhh
Confidence            367778899999999999999999999999999997   5899999999998763

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.42  E-value=2.1e-05  Score=58.48  Aligned_cols=49  Identities=12%  Similarity=0.183  Sum_probs=0.0

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR  115 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~  115 (126)
                      .|..+++++.+++++.++++.|.+++...+||+|+ ++++|+|+..|++.
T Consensus        98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~  146 (486)
T 2cu0_A           98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA  146 (486)
T ss_dssp             --------------------------------------------------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc
Confidence            56778999999999999999999999999999997 99999999999864

>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1

Probab=89.30  E-value=1.2  Score=24.67  Aligned_cols=28  Identities=21%  Similarity=0.328  Sum_probs=22.1

Q ss_pred             CCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           92 VHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        92 ~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ...+=++|++|..+|++++.+-++...+
T Consensus        13 ~~eVrli~~~Ge~lGv~~~~eAl~~A~e   40 (78)
T 1tif_A           13 AREVRLIDQNGDQLGIKSKQEALEIAAR   40 (78)
T ss_dssp             CSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             CCEEEEECCCCcCCCcccHHHHHHHHHH
Confidence            3557788888999999999988876554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	1e-06
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	8e-06
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	0.001
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	1e-05
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	5e-05
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	1e-04
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-04
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	1e-04
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	2e-04
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	4e-04
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	5e-04
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	6e-04
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	0.001
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	0.002
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	0.004
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	0.004

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.5 bits (99), Expect = 1e-06
 Identities = 16/49 (32%), Positives = 30/49 (61%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
             +L C +   L  +I + +   VHR+ VVD+  ++ G+VSL+D+++ L
Sbjct: 92  EGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL 140

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (93), Expect = 8e-06
 Identities = 14/46 (30%), Positives = 27/46 (58%)

Query: 72  LTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
            TC  +  LS ++       VHR +VVD    L+G+++L+D+++ +
Sbjct: 92  YTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 137

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.4 bits (78), Expect = 0.001
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 53  QVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTD 112
             L  P+  + N   Q  + +CQ+ +P+ +VI       V  V ++D+   L+ +    D
Sbjct: 2   HFLKIPI-GDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYD 60

Query: 113 MIRVL 117
           ++ ++
Sbjct: 61  VLGLI 65

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 39.9 bits (92), Expect = 1e-05
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 10/98 (10%)

Query: 20  WRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSP 79
             L+  + + D+         + L L+  E   +                 + TC+    
Sbjct: 45  GTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLK----------RPANFDGVHTCRATDR 94

Query: 80  LSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
           L  +        VHR++VVD+   L G++SL D++  +
Sbjct: 95  LDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYI 132

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.0 bits (87), Expect = 5e-05
 Identities = 15/85 (17%), Positives = 26/85 (30%)

Query: 34  CHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKALTKHVH 93
               V         +   + +L   L S               +  ++  +   L     
Sbjct: 33  NECIVKDREGHFRGVVNKEDLLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEP 92

Query: 94  RVWVVDQQRLLLGLVSLTDMIRVLR 118
            + VVD++  L G VSL D +  L 
Sbjct: 93  YLPVVDEEMRLKGAVSLHDFLEALI 117

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.3 bits (85), Expect = 1e-04
 Identities = 9/49 (18%), Positives = 27/49 (55%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
            + +   +D+PL E +   +  ++  + VVD++  ++G ++  +++  L
Sbjct: 91  LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLAL 139

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 12/106 (11%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 17  GNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQV 76
                 +G  + +D     +   ++ L         ++ T       ++ +    +    
Sbjct: 54  SKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPL--VCISP 111

Query: 77  DSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVLRTSI 121
           ++ L + +   +   +HR+ V+D +    L +++   +++ L+  I
Sbjct: 112 NASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFI 157

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 36.7 bits (84), Expect = 1e-04
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 69  RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118
             +++  V     +V           V V D    LLG+V++ D+I V+ 
Sbjct: 73  ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID 122

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.9 bits (84), Expect = 2e-04
 Identities = 10/45 (22%), Positives = 21/45 (46%)

Query: 73  TCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
                  + EV  K     + ++ V+  +  L+GL+   D+++VL
Sbjct: 111 VATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL 155

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 35.8 bits (81), Expect = 4e-04
 Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 68  QRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
            +        + L +         + R +V    +L+ G+V+L ++   +
Sbjct: 110 DQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLV-GVVALAEIQAAI 158

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.6 bits (81), Expect = 5e-04
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 82  EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILAD 124
           +V        + R  VVD    ++G+V+LTD+ R L  + + D
Sbjct: 90  DVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASITD 132

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 6e-04
 Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 8/105 (7%)

Query: 20  WRLIGTFSASDLR--GCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQ-----QRELL 72
            RL+G     DL     +    Q  +  T++ +  +           T +          
Sbjct: 52  QRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPF 111

Query: 73  TCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
           T    +P+  V+       + +  V    RLL G+++  D+++ +
Sbjct: 112 TVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLL-GIITKKDVLKHI 155

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 34.1 bits (77), Expect = 0.001
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 67  QQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
            +R++   + +  L +     L     RV VVD +   +G++++ D+IR  
Sbjct: 66  VKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY 116

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 33.2 bits (75), Expect = 0.002
 Identities = 6/43 (13%), Positives = 17/43 (39%)

Query: 73  TCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115
                  L E           ++ +V++   L+ +++ TD+ +
Sbjct: 75  VAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKK 117

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 32.9 bits (74), Expect = 0.004
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 90  KHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118
            ++  + VVD +  L G++S+ D+ R + 
Sbjct: 96  FNIRHLPVVDDKGNLKGIISIRDITRAID 124

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 32.8 bits (74), Expect = 0.004
 Identities = 10/45 (22%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 74  CQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118
             V++PL EV+ K     +  + + ++ +++ G+ +L+D++   R
Sbjct: 83  ANVNTPLGEVLRKMAEHRIKHILIEEEGKIV-GIFTLSDLLEASR 126

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.82
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.82
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.82
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.81
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.81
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.81
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.8
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.8
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.8
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.8
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.8
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.79
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.79
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.79
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.79
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.78
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.77
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.77
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.76
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.76
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.74
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.73
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.72
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.7
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.68
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.66
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.24
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.24
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.2
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.19
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.16
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.16
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.14
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.14
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.14
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.1
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.1
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.08
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.08
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.05
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.0
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.97
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.96
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.96
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.91
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.89
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.89
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.86
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.77
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.75
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.62
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.55
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	91.63
d1tifa_	76	Translation initiation factor IF3, N-terminal doma	87.59
d3by8a1	133	Fumarate sensor DcuS {Escherichia coli [TaxId: 562	80.11

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=1.6e-20  Score=118.79  Aligned_cols=114  Identities=16%  Similarity=0.129  Sum_probs=79.5

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHH-H---HHhhhhhcHHHHHHH---------HhcCCCCCCCcccccc
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYA-V---LQTWLPLTALEFTQQ---------VLTSPLFSESNTTQQR   69 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~-~---~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~m~~   69 (126)
                      -|.+++++++||+|+++ +++|++|..|+...... .   ...............         ...........++|++
T Consensus        29 ~m~~~~~~~lPVvd~~~-~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~  107 (156)
T d2yzqa1          29 ALLLSNSMALPVVDSEG-NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTR  107 (156)
T ss_dssp             HHHTCSSSEEEEECTTS-CEEEEEEGGGGGGCGGGCC--------------------------------CCCBGGGTCBS
T ss_pred             HHHHcCCCEEEEEeCCC-CceeEEeeeechhhhcccccccccccccchhhhhhhhhhhhhhHHHhhhcccCCEeehhccc
Confidence            37789999999999887 99999999999543111 0   000000000000000         0001111122458888


Q ss_pred             ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      ++.++.+++++.+++..|.+++++++||+|++|+++|+||++||++++
T Consensus       108 ~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1         108 DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             CceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence            999999999999999999999999999999999999999999999865

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.9e-20  Score=116.76  Aligned_cols=105  Identities=25%  Similarity=0.358  Sum_probs=78.2

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++++||+|+++ +++|+||.+|+..+................+..          ...+..+++++.+++++.+
T Consensus        34 ~m~~~~~~~ipVvd~~~-~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~v~~~~~l~~  102 (140)
T d2nyca1          34 MLTQGRVSSVPIIDENG-YLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR----------RSDDFEGVYTCTKNDKLST  102 (140)
T ss_dssp             HHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHHTC----CCSBHHHHHHH----------CC------CEECTTSBHHH
T ss_pred             HHHHcCCcEEEEEecCC-eEcceehhhHHHHHHhhccccccccchhhhhhh----------hhhcccccEEECCCCcHHH
Confidence            46788999999999888 999999999996542222211222334444322          1133457789999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++++|.+++.+++||+|++|+++|+||++|+++++.
T Consensus       103 ~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1         103 IMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             HHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             HHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence            999999999999999999999999999999999874

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.82  E-value=3.2e-20  Score=117.36  Aligned_cols=107  Identities=21%  Similarity=0.274  Sum_probs=85.9

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      -|.+++++++||+|+++ +++|++|.+|+..............++.+++..-          ..+..++.++.+++++.+
T Consensus        29 ~m~~~~~~~lpVvd~~~-~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~~~v~~~~~l~~   97 (153)
T d2ooxe2          29 MLAEKNISAVPIVNSEG-TLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKR----------PANFDGVHTCRATDRLDG   97 (153)
T ss_dssp             HHHHTTCSEEEEECGGG-BEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTS----------CCCSSCCCEECTTCBHHH
T ss_pred             HHHHcCcceEeeecccc-eEEEEEEeeeeeehhccccccccccchhhheeee----------ecccCCCeEECCCCcHHH
Confidence            36789999999999887 9999999999964422221122345777777431          134567789999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      +++.|.+++++++||+|++|+++|+||+.|+++++...
T Consensus        98 ~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~  135 (153)
T d2ooxe2          98 IFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYD  135 (153)
T ss_dssp             HHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSC
T ss_pred             HHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcC
Confidence            99999999999999999999999999999999987643

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=9.7e-21  Score=115.81  Aligned_cols=96  Identities=21%  Similarity=0.253  Sum_probs=77.2

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++++++||+|+++ +++|++|.+|+...............+.++|                ++++.++++++++.+|
T Consensus        27 m~~~~~~~~pVvd~~~-~~~Giit~~Di~~~~~~~~~~~~~~~v~~im----------------~~~~~~v~~~~~~~~~   89 (123)
T d1y5ha3          27 MREHDIGALPICGDDD-RLHGMLTDRDIVIKGLAAGLDPNTATAGELA----------------RDSIYYVDANASIQEM   89 (123)
T ss_dssp             HHHHTCSEEEEECGGG-BEEEEEEHHHHHHTTGGGTCCTTTSBHHHHH----------------TTCCCCEETTCCHHHH
T ss_pred             HHHcCCCceEEEeccc-hhhhhhhhhhHhhhhhhcCCCcccceEEEEe----------------eccceeeeecchHHHH
Confidence            6678999999999887 9999999999843211111111233455544                5688999999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      +++|.+++++++||+| +|+++|+||+.||++.+
T Consensus        90 ~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          90 LNVMEEHQVRRVPVIS-EHRLVGIVTEADIARHL  122 (123)
T ss_dssp             HHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHTC
T ss_pred             HHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhhC
Confidence            9999999999999999 68999999999999864

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=6.8e-20  Score=111.90  Aligned_cols=93  Identities=20%  Similarity=0.255  Sum_probs=71.9

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||+|++| +++|++|.+|+.......       ++.                .+|.++++++++++++.+
T Consensus        26 ~m~~~~~~~~~Vvd~~~-~~~G~it~~dl~~~~~~~-------~~~----------------~~~~~~~~~v~~~~~l~~   81 (122)
T d2yzqa2          26 LFKKYKVRSFPVVNKEG-KLVGIISVKRILVNPDEE-------QLA----------------MLVKRDVPVVKENDTLKK   81 (122)
T ss_dssp             ------CCEEEEECTTC-CEEEEEESSCC---------------------------------CCCBSCCCEEETTSBHHH
T ss_pred             HHHHcCCcEEEEEeccc-cchhhhhcchhhhhhccc-------chh----------------hccccceeecchhhHHHH
Confidence            36788999999999988 999999999996432111       111                267778999999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      |+.+|.+++++++||+|++|+++|+||++|+++.+..
T Consensus        82 ~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          82 AAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             HHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT
T ss_pred             HHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHh
Confidence            9999999999999999999999999999999987654

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.81  E-value=5.7e-21  Score=119.57  Aligned_cols=104  Identities=17%  Similarity=0.183  Sum_probs=83.1

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccc-cCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLR-GCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      .|.+++++.+||+|+++ +++|++|.+|+. .+.... ......++++                +|.++++++++++++.
T Consensus        28 ~m~~~~~~~~~V~d~~~-~~~Giit~~di~~~~~~~~-~~~~~~~v~~----------------im~~~~~~v~~~~~l~   89 (142)
T d1pvma4          28 IMNENHLYGLVVKDDNG-NDVGLLSERSIIKRFIPRN-KKPDEVPIRL----------------VMRKPIPKVKSDYDVK   89 (142)
T ss_dssp             HHHHHTCCEEEEECTTS-CEEEEEEHHHHHHHTGGGC-CCGGGSBGGG----------------TSBSSCCEEETTCBHH
T ss_pred             HHHHCCCceEeeeccCC-cccceEEeechhhhhhhhc-cccccccccc----------------ccccccccccchhhHH
Confidence            46678999999999887 999999999994 332111 0111122333                6678999999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhhh
Q 039385           82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILAD  124 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~~  124 (126)
                      +|+++|.+++.+++||+|++|+++|+||..||++.+.+....|
T Consensus        90 ~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~~~~~~d  132 (142)
T d1pvma4          90 DVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASITD  132 (142)
T ss_dssp             HHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCHHHHHH
T ss_pred             HHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHhhhhhhh
Confidence            9999999999999999999999999999999999876655443

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=5.1e-20  Score=115.31  Aligned_cols=105  Identities=22%  Similarity=0.360  Sum_probs=82.3

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++++++||+|+++ +++|++|..|+..............++.+.+..          ...|..+++++.+++++.++
T Consensus        38 m~~~~~~~lpVvd~~~-~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~----------~~~~~~~~~~v~~~~~l~~~  106 (145)
T d2v8qe1          38 FVQHRVSALPVVDEKG-RVVDIYSKFDVINLAAEKTYNNLDVSVTKALQH----------RSHYFEGVLKCYLHETLEAI  106 (145)
T ss_dssp             HHHHCCSEEEEECTTS-BEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGG----------CCSCCCSCCEECTTSBHHHH
T ss_pred             HHHcCCCcccccccCC-ceEEEEEcchhhhhhhcccccchhhhhhhccch----------hhhccCCCeEECCCCcHHHH
Confidence            5678999999999888 999999999996543222111122344443311          11456688899999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      +++|.+++++++||+|++|+++|+||++||++++..
T Consensus       107 ~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1         107 INRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             HHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHS
T ss_pred             HHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHHh
Confidence            999999999999999999999999999999999864

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.80  E-value=6.8e-21  Score=116.16  Aligned_cols=97  Identities=16%  Similarity=0.139  Sum_probs=49.9

Q ss_pred             cccCCCCceeeEeeCC--CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCH
Q 039385            3 WYKKPNVERNSISLGN--GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPL   80 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~--~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l   80 (126)
                      .|.+++++++||+|+.  +++++|++|.+|+........    ..+....+              .+..+++++.+++++
T Consensus        21 ~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~----~~~~~~~~--------------~~~~~~~~v~~~~~~   82 (120)
T d1jr1a4          21 AKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEH----DRFLEEIM--------------TKREDLVVAPAGITL   82 (120)
T ss_dssp             BC---------------CTTCCC--------------------------CC--------------SBTTTSCCEETTCCH
T ss_pred             HHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhcccc----CceeEEEE--------------eeccCceEECCCCCH
Confidence            5788999999999852  239999999999964422221    11222221              345578999999999


Q ss_pred             HHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           81 SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        81 ~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      .+|+++|.+++++++||+|++|+++|+||+.||++..
T Consensus        83 ~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          83 KEANEILQRSKKGKLPIVNENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             HHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhcc
Confidence            9999999999999999999999999999999999863

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.80  E-value=1.8e-19  Score=110.73  Aligned_cols=91  Identities=19%  Similarity=0.203  Sum_probs=78.8

Q ss_pred             CCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHHH
Q 039385            7 PNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGK   86 (126)
Q Consensus         7 ~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~~   86 (126)
                      .++..+||+|+++ +++|+++.+++.....       ..++.+                +|.++++++++++++.+|++.
T Consensus        35 ~~~~~~~Vvd~~~-~l~G~v~~~~l~~~~~-------~~~v~~----------------im~~~~~~v~~~~~l~~a~~~   90 (127)
T d2ouxa2          35 ETIYYVYVVDQEN-HLVGVISLRDLIVNDD-------DTLIAD----------------ILNERVISVHVGDDQEDVAQT   90 (127)
T ss_dssp             SCCSEEEEECTTC-BEEEEEEHHHHTTSCT-------TSBHHH----------------HSBSCCCCEETTSBHHHHHHH
T ss_pred             cceeeeEEEecCC-eEEEEEEeeccccccc-------cEEhhh----------------hccCCCccCCCCCCHHHHHHH
Confidence            3678999999998 9999999999964422       235666                456789999999999999999


Q ss_pred             HHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385           87 ALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        87 m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~  121 (126)
                      |.+++++++||+|++|+++|+||..||++.+.+..
T Consensus        91 m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~eea  125 (127)
T d2ouxa2          91 IRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEA  125 (127)
T ss_dssp             HHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             HHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHHHh
Confidence            99999999999999999999999999999887654

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=3.5e-20  Score=116.23  Aligned_cols=94  Identities=21%  Similarity=0.247  Sum_probs=80.4

Q ss_pred             CCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHHHH
Q 039385            8 NVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKA   87 (126)
Q Consensus         8 ~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~~m   87 (126)
                      ++..+||+|+++ +++|+++.+|+.......       ++.                .+|.+++.++.+++++.+|++.|
T Consensus        36 ~~~~~~Vvd~~~-~l~G~v~~~dl~~~~~~~-------~v~----------------~im~~~~~~v~~~~~~~~a~~~m   91 (144)
T d2yvxa2          36 TIYYIYVVDEKG-RLKGVLSLRDLIVADPRT-------RVA----------------EIMNPKVVYVRTDTDQEEVARLM   91 (144)
T ss_dssp             CSSBCEEBCTTC-BBCCBCBHHHHTTSCTTC-------BST----------------TTSBSSCCCEESSCCHHHHHHHH
T ss_pred             ceeeeEEecCCC-CEecccchhhhhhccccc-------chH----------------HhcccCCccCCCCChHHHHHHHH
Confidence            578999999998 999999999996542111       222                26788999999999999999999


Q ss_pred             HhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhhhc
Q 039385           88 LTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADF  125 (126)
Q Consensus        88 ~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~~~  125 (126)
                      .+++++++||+|++|+++|+||..||++.+.+...+|.
T Consensus        92 ~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e~~ed~  129 (144)
T d2yvxa2          92 ADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEATEDI  129 (144)
T ss_dssp             HHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999988776653

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=1.1e-19  Score=110.69  Aligned_cols=95  Identities=16%  Similarity=0.182  Sum_probs=81.3

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++.+++||+|+++ +++|+++.+|+......       .++.+                .|..++.++++++++.+
T Consensus        26 ~m~~~~~~~v~Vvd~~~-~~~Gii~~~dl~~~~~~-------~~v~~----------------~~~~~~~~v~~~~~l~~   81 (121)
T d1vr9a3          26 RMRQYQTNECIVKDREG-HFRGVVNKEDLLDLDLD-------SSVFN----------------KVSLPDFFVHEEDNITH   81 (121)
T ss_dssp             HHHHTTSSEEEEECTTS-BEEEEEEGGGGTTSCTT-------SBSGG----------------GCBCTTCCEETTSBHHH
T ss_pred             hhhhcCcEEEEEEeCCc-eeEEEeehhhhhhhhcc-------ccccc----------------cccCccEEECCCCCHHH
Confidence            36678999999999888 99999999999755221       12222                56678899999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~  121 (126)
                      ++++|.+++...+||+|++|+++|+||..|+++++.+.+
T Consensus        82 ~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~l  120 (121)
T d1vr9a3          82 ALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL  120 (121)
T ss_dssp             HHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC
T ss_pred             HHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHHhc
Confidence            999999999999999999999999999999999988754

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.79  E-value=6.5e-20  Score=114.26  Aligned_cols=101  Identities=17%  Similarity=0.225  Sum_probs=81.6

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHh-------hhhhcHHHHHHHHhcCCCCCCCccccccceEEEeC
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQT-------WLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQV   76 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~   76 (126)
                      |.+++++++||+|+++ +++|+||.+|+..........       ....++.+                +|.+++.++++
T Consensus        28 m~~~~~~~lpVvd~~~-~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~----------------im~~~~~~v~~   90 (139)
T d2o16a3          28 MEALDIRHVPIVDANK-KLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE----------------VMHTDVTSVAP   90 (139)
T ss_dssp             HHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHHHHCC---------CCCBHHH----------------HSCSCEEEBCT
T ss_pred             HHHcCCCeeeeecccc-cccccccHHHHHHHHHhhhhhhhcccccccccchhH----------------hhccccccccc
Confidence            5678999999999888 999999999996442221100       01122333                56779999999


Q ss_pred             CCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385           77 DSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        77 ~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~  122 (126)
                      ++++.+|+.+|.+++++++||+| +|+++|+||+.||++++.+.+.
T Consensus        91 ~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~~~~~  135 (139)
T d2o16a3          91 QAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAINLLE  135 (139)
T ss_dssp             TSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHHHHHh
Confidence            99999999999999999999999 5899999999999999988764

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=1e-19  Score=113.77  Aligned_cols=113  Identities=13%  Similarity=0.202  Sum_probs=79.9

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++++++||+|+++ +++|++|.+|+..+.......  ......................+|. +++++.+++++.+|
T Consensus        30 m~~~~~~~ipVvd~~~-~~vGiis~~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~l~~a  105 (145)
T d1o50a3          30 ILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFG--FIPKEELIRSSMKRLIAKNASEIML-DPVYVHMDTPLEEA  105 (145)
T ss_dssp             HHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHC--CCC-------CCCCCSSCBHHHHCB-CCCCBCTTSBHHHH
T ss_pred             HHHcCCceEEEeccCc-ceeeeeccchhhhhhhccccc--ccchhHHHHhhhhhccccCHHHHcC-CCEEEcCCCCHHHH
Confidence            6788999999999888 999999999996542222110  1111111111001111111122443 66789999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      +.+|.+++++++||+|++|+++|+||.+||++++.+.
T Consensus       106 ~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3         106 LKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             HHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhc
Confidence            9999999999999999999999999999999999865

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.79  E-value=2e-19  Score=111.98  Aligned_cols=104  Identities=8%  Similarity=0.196  Sum_probs=84.3

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHH-----hhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCC
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQ-----TWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDS   78 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~   78 (126)
                      |.+++++++||+|+++ +++|+++..|+.........     .....++.+                +|.++++++.+++
T Consensus        28 m~~~~~~~ipVv~~~~-~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~----------------im~~~~~~v~~~~   90 (141)
T d3ddja1          28 MLRRGFRRLPVIDDDN-KVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD----------------VMVTNLVTIDELA   90 (141)
T ss_dssp             HHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH----------------HSBCCCCBCCTTS
T ss_pred             HHHcCCCeeecccccC-ccccccccccchhhhhccccccccccccCCCHHH----------------HhCcccccccccc
Confidence            5678999999999988 99999999999544211110     111223333                5677899999999


Q ss_pred             CHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhhh
Q 039385           79 PLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILAD  124 (126)
Q Consensus        79 ~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~~  124 (126)
                      ++.++++.|.+++++++||+|++|+++|+||++||++++.+....+
T Consensus        91 ~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~~~~~  136 (141)
T d3ddja1          91 SVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVME  136 (141)
T ss_dssp             BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999998876643

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.79  E-value=6.9e-19  Score=107.86  Aligned_cols=96  Identities=18%  Similarity=0.221  Sum_probs=77.8

Q ss_pred             cccCCCCceeeEeeCC-CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            3 WYKKPNVERNSISLGN-GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~-~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      .|.+++++++||+|+. +++++|++|.+|+.......      .+               ....+|..+++++.+++++.
T Consensus        22 ~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~------~~---------------~~~~~~~~~~~~~~~~~~l~   80 (126)
T d1zfja4          22 LMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYN------AP---------------ISEHMTSEHLVTAAVGTDLE   80 (126)
T ss_dssp             HHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSS------SB---------------TTTSCCCSCCCCEETTCCHH
T ss_pred             HHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccC------Cc---------------eeeeeeccceeecCCCCCHH
Confidence            4678999999999972 23899999999995431111      01               11125567889999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      +|+++|.+++++++||+|++|+++|+||+.|++++...
T Consensus        81 ~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          81 TAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             HHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             HHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            99999999999999999999999999999999998763

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.78  E-value=8.3e-20  Score=112.79  Aligned_cols=98  Identities=12%  Similarity=0.173  Sum_probs=78.2

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccC-c---HHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCC
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGC-H---YAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSP   79 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~   79 (126)
                      |.+++++++||+|+++ +++|++|.+|+... .   ..........++.+                +|++++.++.++++
T Consensus        30 m~~~~~s~~pVvd~~~-~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~----------------~m~~~~~~v~~~~~   92 (132)
T d1yava3          30 LTKTGYTAIPVLDPSY-RLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE----------------VMLTDIPRLHINDP   92 (132)
T ss_dssp             HHHHCCSEEEEECTTC-BEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH----------------HSBCSCCEEETTSB
T ss_pred             HHhhCCCceEEeeccc-ccccEEEcchhHHHhhccccccccccccccccc----------------cccccccccccchh
Confidence            6778999999999887 99999999999532 1   11111122334555                45678899999999


Q ss_pred             HHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           80 LSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        80 l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      +.+++..|.+++  .+||+|++|+++|+||++|+++++.+.
T Consensus        93 l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3          93 IMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             HHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHhh
Confidence            999999998764  599999999999999999999998875

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.77  E-value=9.9e-20  Score=111.83  Aligned_cols=96  Identities=14%  Similarity=0.181  Sum_probs=76.2

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeecccccc-CcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRG-CHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS   81 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~   81 (126)
                      .|.+++++++||++ ++ +++|++|.+|+.. +..... .....++.+                +|++++.++.+++++.
T Consensus        30 ~m~~~~~~~vpV~~-~~-~~vGiit~~Di~~~~~~~~~-~~~~~~v~~----------------im~~~~~~v~~~~~l~   90 (127)
T d2rc3a1          30 KMAADNIGALLVMK-DE-KLVGILTERDFSRKSYLLDK-PVKDTQVKE----------------IMTRQVAYVDLNNTNE   90 (127)
T ss_dssp             HHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHGGGSSS-CGGGSBGGG----------------TSBCSCCCBCTTCBHH
T ss_pred             HHHHcCCCEEEEEE-CC-eEEEEEEccchhhhhhhhcc-cccceeEee----------------eccceeEEeccCccHH
Confidence            46788999999998 56 8999999999942 211110 011122222                6678999999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      +|+++|.+++++++||+| +|+++|+||..|+++.+.
T Consensus        91 ~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          91 DCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             HHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHHh
Confidence            999999999999999999 699999999999999863

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.77  E-value=1.3e-19  Score=111.29  Aligned_cols=97  Identities=20%  Similarity=0.273  Sum_probs=78.5

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++++++||+|+ + +++|++|.+|+.........  ...++                ..+|.+++.++.+++++.+|
T Consensus        30 m~~~~~~~~pV~d~-~-~~~Givt~~dl~~~~~~~~~--~~~~v----------------~~~~~~~~~~v~~~~~l~~~   89 (127)
T d2ef7a1          30 MTEKNIGSVIVVDG-N-KPVGIITERDIVKAIGKGKS--LETKA----------------EEFMTASLITIREDSPITGA   89 (127)
T ss_dssp             HHHHTCSEEEEEET-T-EEEEEEEHHHHHHHHHTTCC--TTCBG----------------GGTSEECCCCEETTSBHHHH
T ss_pred             HHHcCCceEEeecc-c-chhhhcchhHHHHHHHhhcc--ccchh----------------hhhhhhhccccccccchhHH
Confidence            56789999999985 5 89999999999543111100  11122                22667799999999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      ++.|.+++.+++||+|++|+++|+||+.|+++++.+.
T Consensus        90 ~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~~  126 (127)
T d2ef7a1          90 LALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM  126 (127)
T ss_dssp             HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             HHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhh
Confidence            9999999999999999999999999999999998764

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1e-18  Score=110.71  Aligned_cols=108  Identities=11%  Similarity=0.167  Sum_probs=80.2

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhh-------hhcHHHHHHHHhcCCCCCCCccccccceEEEeC
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWL-------PLTALEFTQQVLTSPLFSESNTTQQRELLTCQV   76 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~   76 (126)
                      |.+++++++||+|++.++++|++|.+|+............       ...........         ...|..+++++++
T Consensus        41 l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~v~~  111 (159)
T d2v8qe2          41 LVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVY---------LQDSFKPLVCISP  111 (159)
T ss_dssp             HHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBHHHHHHHH---------SSSSCCCCCCBCT
T ss_pred             HHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhhhccccccee---------eeeeccceEEECC
Confidence            5678999999999765599999999999654222111000       00111111111         1266778999999


Q ss_pred             CCCHHHHHHHHHhcCCCEEEEEc-CCCceEEEEeHHHHHHHHHHh
Q 039385           77 DSPLSEVIGKALTKHVHRVWVVD-QQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        77 ~~~l~~~~~~m~~~~~~~lpVvd-~~~~lvGivs~~dil~~~~~~  120 (126)
                      ++++.+|+.+|.+++++++||+| ++|+++|+||++||++++...
T Consensus       112 ~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~  156 (159)
T d2v8qe2         112 NASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLF  156 (159)
T ss_dssp             TSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHH
Confidence            99999999999999999999998 468999999999999998654

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.76  E-value=7.3e-19  Score=113.34  Aligned_cols=115  Identities=7%  Similarity=0.069  Sum_probs=83.1

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHH---------HHhhhhhcHHHHHHHHhcCCCCCCCccccccceEE
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAV---------LQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLT   73 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~   73 (126)
                      .|.+++++++||+|+++++++|++|..|+.......         ...+..............       ...|..++++
T Consensus        47 ~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~  119 (179)
T d2ooxe1          47 LLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERK-------IGAIPPETIY  119 (179)
T ss_dssp             HHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGGSBHHHHHHHHHH-------TTCSCSSCCC
T ss_pred             HHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhhhhccchhhhccccee-------eeecccCceE
Confidence            467899999999997655999999999995431110         000011111111111111       1256779999


Q ss_pred             EeCCCCHHHHHHHHHhcCCCEEEEEcCCC-----ceEEEEeHHHHHHHHHHhhhhh
Q 039385           74 CQVDSPLSEVIGKALTKHVHRVWVVDQQR-----LLLGLVSLTDMIRVLRTSILAD  124 (126)
Q Consensus        74 v~~~~~l~~~~~~m~~~~~~~lpVvd~~~-----~lvGivs~~dil~~~~~~~~~~  124 (126)
                      |.+++|+.+|+.+|.+++++++||+|++|     +++|+||++||++++...+-+.
T Consensus       120 v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~~~~~  175 (179)
T d2ooxe1         120 VHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKET  175 (179)
T ss_dssp             BCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTTCGGG
T ss_pred             ECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHhhhHh
Confidence            99999999999999999999999998654     6999999999999998766543

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=6.2e-19  Score=108.87  Aligned_cols=98  Identities=20%  Similarity=0.379  Sum_probs=79.1

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeecccccc-CcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRG-CHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      |.+++++++||+|+++ +++|++|..|+.. +.....  ....++.+                +|.+++.++++++++.+
T Consensus        31 m~~~~~~~~~Vvd~~~-~~~Giit~~di~~~~~~~~~--~~~~~v~~----------------im~~~~~~v~~~~~~~~   91 (132)
T d2yzia1          31 MMEFDVGSLVVINDDG-NVVGFFTKSDIIRRVIVPGL--PYDIPVER----------------IMTRNLITANVNTPLGE   91 (132)
T ss_dssp             HHHHTCSEEEEECTTS-CEEEEEEHHHHHHHTTTTCC--CTTSBGGG----------------TCBCSCCEEETTSBHHH
T ss_pred             HHHcCCcEEEEecccc-eeeeeeeHHHHHHHHhhccC--ccceeEee----------------cccccccccCcchHHHH
Confidence            5678999999999988 9999999999953 211110  01122333                66778999999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~  121 (126)
                      +++.|.+++++++||++ +|+++|+||..|+++++.+.+
T Consensus        92 ~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~~l  129 (132)
T d2yzia1          92 VLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRRL  129 (132)
T ss_dssp             HHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHCCS
T ss_pred             HHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHH
Confidence            99999999999999887 799999999999999987654

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.73  E-value=4.9e-18  Score=103.15  Aligned_cols=95  Identities=19%  Similarity=0.267  Sum_probs=76.6

Q ss_pred             cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      .|.+++++.+||+++ + +++|++|.+|+....... ..+...++.+                +|.+++.++++++++.+
T Consensus        25 ~~~~~~~~~~~V~~~-~-~~~Gvit~~Di~~~l~~~-~~~~~~~v~~----------------~m~~~~~~v~~~~~l~~   85 (120)
T d1pbja3          25 NYVENAKGSSVVVKE-G-VRVGIVTTWDVLEAIAEG-DDLAEVKVWE----------------VMERDLVTISPRATIKE   85 (120)
T ss_dssp             HHHHHCCCEEEEEET-T-EEEEEEEHHHHHHHHHHT-CCTTTSBHHH----------------HCBCGGGEECTTSCHHH
T ss_pred             HHHHcCceEEEEEeC-C-cEEEEEEeeecccccccc-ccccceeEee----------------ecccccccccchhHHHH
Confidence            356788999999974 6 999999999996432221 1122345555                45678999999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      |+++|.+++++++||++ +|+++|++|++|++++.
T Consensus        86 a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          86 AAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAK  119 (120)
T ss_dssp             HHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             HHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhcC
Confidence            99999999999999987 78999999999999874

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.72  E-value=4.9e-18  Score=104.87  Aligned_cols=106  Identities=13%  Similarity=0.101  Sum_probs=77.9

Q ss_pred             ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385            4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV   83 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~   83 (126)
                      |.+++++++||+|+   +++|+++..|+..........   .............   + .+.+|+.+++++++++++.+|
T Consensus        27 m~~~~~~~l~V~d~---~lvg~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~-v~~im~~~~~~v~~~~~l~~a   96 (135)
T d3ddja2          27 INEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCKD---SCSQGDLYHISTT---P-IIDYMTPNPVTVYNTSDEFTA   96 (135)
T ss_dssp             TTGGGCCEEEEESS---SEEEEEEHHHHHGGGTTCC------CCHHHHHHHHTS---B-GGGTSEESCCCEETTSCHHHH
T ss_pred             HHHhCCeEEEEEec---ceeceeeccchhhhhcccccc---chhhhhccccccC---C-HHHHhCCccceEEeccccchh
Confidence            67899999999973   699999999995431111000   0001111111111   1 123778899999999999999


Q ss_pred             HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      +++|.+++++++||+|++|+++|+||++|+++.+.+
T Consensus        97 ~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          97 INIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             HHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG
T ss_pred             hhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence            999999999999999999999999999999998764

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.70  E-value=3.9e-17  Score=103.03  Aligned_cols=114  Identities=11%  Similarity=0.148  Sum_probs=80.6

Q ss_pred             cccCCCCceeeEeeCCC-ceeEEEeeccccccCcHHHHHhhh------hhc---HHHHHHHHhcCCCCCCCccccccceE
Q 039385            3 WYKKPNVERNSISLGNG-WRLIGTFSASDLRGCHYAVLQTWL------PLT---ALEFTQQVLTSPLFSESNTTQQRELL   72 (126)
Q Consensus         3 ~~~~~~~~~~pVvd~~~-~~l~G~is~~dl~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~m~~~~~   72 (126)
                      .|.+++++++||+|+.+ +.++|+++..|+............      ...   ...+...... .........|.++++
T Consensus        36 ~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  114 (160)
T d2d4za3          36 VLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKN-VVVNFETCRIDQSPF  114 (160)
T ss_dssp             HHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBHHHHHHHHHHHTT-CBCCTTSSCEECCSC
T ss_pred             HHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhccccchhhhhhhhhcc-cccceeeecccCCCE
Confidence            36788999999999642 389999999999654222111000      001   1111111111 111222347888999


Q ss_pred             EEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           73 TCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        73 ~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++.+++|+.++++.|.+++++++||+| +|+++|+||++||++++-
T Consensus       115 tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3         115 QLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             CBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             EEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhC
Confidence            999999999999999999999999998 699999999999999863

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.7e-18  Score=107.51  Aligned_cols=119  Identities=13%  Similarity=0.113  Sum_probs=80.2

Q ss_pred             ccCCCCceeeEeeC-CCceeEEEeeccccccCcHHHHHhhh---hhcHHHHHHHHhcCCC----CCCCccccccceEEEe
Q 039385            4 YKKPNVERNSISLG-NGWRLIGTFSASDLRGCHYAVLQTWL---PLTALEFTQQVLTSPL----FSESNTTQQRELLTCQ   75 (126)
Q Consensus         4 ~~~~~~~~~pVvd~-~~~~l~G~is~~dl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~m~~~~~~v~   75 (126)
                      |.+++++++||+++ ++++++|++|.+|+............   ......+.........    ......+|.++++++.
T Consensus        35 l~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~  114 (169)
T d2j9la1          35 ISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVT  114 (169)
T ss_dssp             HHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEE
T ss_pred             HHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhhccccccchhhhccCCCEEEC
Confidence            57889999999953 23489999999999643211100000   0000000000000000    0001347888999999


Q ss_pred             CCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhh
Q 039385           76 VDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA  123 (126)
Q Consensus        76 ~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~  123 (126)
                      +++++.+++++|.+++.+++||+| +|+++|+||+.|+++++.+...+
T Consensus       115 ~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~~~~~  161 (169)
T d2j9la1         115 DLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMANQ  161 (169)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHCC-
T ss_pred             CCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHHHhcC
Confidence            999999999999999999999998 78999999999999999876544

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.66  E-value=1.1e-16  Score=98.29  Aligned_cols=97  Identities=18%  Similarity=0.166  Sum_probs=74.6

Q ss_pred             ccCCCCceeeEeeCC-CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385            4 YKKPNVERNSISLGN-GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE   82 (126)
Q Consensus         4 ~~~~~~~~~pVvd~~-~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~   82 (126)
                      |.+++++++||++.+ .++++|+++..|+.........                  ... ....+..++.++.+++++.+
T Consensus        27 m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~------------------~~~-~~~~~~~~~~~v~~~~~~~~   87 (131)
T d2riha1          27 LAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD------------------LDG-PAMPIANSPITVLDTDPVHV   87 (131)
T ss_dssp             HHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCC------------------TTS-BSGGGCBCCCEEETTSBHHH
T ss_pred             HHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccc------------------ccc-ccccccccceeEeeecchHH
Confidence            567899999999543 2389999999999533111100                  000 01134457789999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      |+++|.+++++++||+|++|+++|+||+.||++.+..
T Consensus        88 a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~~~  124 (131)
T d2riha1          88 AAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI  124 (131)
T ss_dssp             HHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred             HHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            9999999999999999999999999999999987654

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.24  E-value=7.6e-12  Score=77.02  Aligned_cols=56  Identities=23%  Similarity=0.255  Sum_probs=52.4

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      ++|++++.++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+++.+...
T Consensus         6 diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~   61 (139)
T d2o16a3           6 DMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESS   61 (139)
T ss_dssp             GTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             HhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhh
Confidence            47888999999999999999999999999999999999999999999999887654

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.24  E-value=1e-11  Score=75.71  Aligned_cols=54  Identities=15%  Similarity=0.145  Sum_probs=49.9

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++..++.++.+++++.+|+++|.+++++++||+|++|+++|++|..|+++++..
T Consensus         9 ip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~   62 (132)
T d1yava3           9 IEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFG   62 (132)
T ss_dssp             EEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBC
T ss_pred             ccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhc
Confidence            335688999999999999999999999999999999999999999999998864

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.20  E-value=2e-11  Score=74.51  Aligned_cols=55  Identities=16%  Similarity=0.268  Sum_probs=51.2

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ++|+++++++++++++.+|++.|.+++++.+||+|++|+++|+||..|+++.+..
T Consensus         9 ~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~   63 (132)
T d2yzia1           9 VYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV   63 (132)
T ss_dssp             GTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT
T ss_pred             HHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhh
Confidence            4788899999999999999999999999999999999999999999999987543

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=7.4e-12  Score=75.55  Aligned_cols=53  Identities=8%  Similarity=0.053  Sum_probs=49.1

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      ++|+++++++.+++++.+|++.|.+++++.+||+|++|+++|++|..|+++..
T Consensus         5 diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~   57 (123)
T d1y5ha3           5 DIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKG   57 (123)
T ss_dssp             HHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTT
T ss_pred             HhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhh
Confidence            36778999999999999999999999999999999899999999999998754

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.16  E-value=5.4e-11  Score=73.32  Aligned_cols=56  Identities=18%  Similarity=0.355  Sum_probs=51.9

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~  121 (126)
                      +|..+++++.+++|+.+|+++|.+++++.+||+|++|+++|+||..|+++.+....
T Consensus         9 ~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~   64 (145)
T d1o50a3           9 LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHF   64 (145)
T ss_dssp             SSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHH
T ss_pred             hCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhccc
Confidence            67789999999999999999999999999999999999999999999999876543

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.16  E-value=1.7e-11  Score=76.59  Aligned_cols=52  Identities=27%  Similarity=0.291  Sum_probs=49.0

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      +|.++++++.+++|+.+|++.|.++++.++||+|++|+++|+||..|+++.+
T Consensus         9 ~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~   60 (156)
T d2yzqa1           9 YYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDS   60 (156)
T ss_dssp             TSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCG
T ss_pred             HhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhh
Confidence            7888999999999999999999999999999999999999999999997643

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.14  E-value=6.6e-11  Score=73.01  Aligned_cols=54  Identities=15%  Similarity=0.171  Sum_probs=50.6

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++|.+++.++++++++.+|++.|.+++.+.+||+|++|+++|++|..|+++.+.
T Consensus         7 dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~   60 (142)
T d1pvma4           7 KIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI   60 (142)
T ss_dssp             GTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTG
T ss_pred             HhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhh
Confidence            378889999999999999999999999999999999999999999999998754

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=5.6e-11  Score=73.04  Aligned_cols=56  Identities=21%  Similarity=0.429  Sum_probs=51.2

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~  121 (126)
                      .+..++.++.+++|+.+|+++|.++++..+||+|++|+++|+||..|+++.+....
T Consensus        14 ~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~   69 (140)
T d2nyca1          14 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI   69 (140)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC-
T ss_pred             ccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhcc
Confidence            56678999999999999999999999999999999999999999999999876543

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.14  E-value=4.9e-11  Score=72.17  Aligned_cols=50  Identities=18%  Similarity=0.178  Sum_probs=45.2

Q ss_pred             ccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC--CCceEEEEeHHHHHHHH
Q 039385           68 QRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ--QRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        68 ~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--~~~lvGivs~~dil~~~  117 (126)
                      ..+++++++++++.+|+++|.++++..+||+|+  +++++|+||..|+.+..
T Consensus         4 i~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~   55 (126)
T d1zfja4           4 IIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS   55 (126)
T ss_dssp             SSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS
T ss_pred             EeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhh
Confidence            346789999999999999999999999999986  68999999999997753

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.10  E-value=1.5e-10  Score=70.05  Aligned_cols=56  Identities=16%  Similarity=0.326  Sum_probs=51.3

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~  121 (126)
                      ++|+++++++.+++++.+|+++|.+++++.+||+| +|+++|++|..|+++++.+..
T Consensus         8 d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~~~~   63 (127)
T d2ef7a1           8 EYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGK   63 (127)
T ss_dssp             GTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTC
T ss_pred             HhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHHhhc
Confidence            37888999999999999999999999999999998 589999999999999887543

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.10  E-value=1.4e-10  Score=69.54  Aligned_cols=54  Identities=15%  Similarity=0.256  Sum_probs=49.8

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      +|++++.++.+++|+.+|++.|.+++.+.+||++ +|+++|+||..||++.+.+.
T Consensus         5 iM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~   58 (120)
T d1pbja3           5 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEG   58 (120)
T ss_dssp             HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHT
T ss_pred             hCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeecccccccc
Confidence            6788999999999999999999999999999998 58999999999999987654

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.08  E-value=1.3e-11  Score=74.42  Aligned_cols=57  Identities=14%  Similarity=0.148  Sum_probs=34.2

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL  122 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~  122 (126)
                      +|.++++++++++++.+|+++|.+++.+.+||+|++|+++|+||..|++........
T Consensus         6 iM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~~~~~   62 (122)
T d2yzqa2           6 IMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQL   62 (122)
T ss_dssp             HSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC---------
T ss_pred             ccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhcccch
Confidence            567789999999999999999999999999999999999999999999987655444

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.08  E-value=4.4e-11  Score=71.88  Aligned_cols=52  Identities=12%  Similarity=0.194  Sum_probs=48.9

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      +|++++.++.+++|+.+|+++|.+++.+.+||+|++|+++|+++..|+++..
T Consensus         6 ~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~   57 (121)
T d1vr9a3           6 WVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD   57 (121)
T ss_dssp             GCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC
T ss_pred             hhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhh
Confidence            6788999999999999999999999999999999999999999999998654

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.05  E-value=2.4e-10  Score=70.04  Aligned_cols=55  Identities=18%  Similarity=0.317  Sum_probs=51.0

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      +|++++.++++++|+.+|++.|.+++++++||+|++++++|++|..|+++.+...
T Consensus         7 iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~   61 (141)
T d3ddja1           7 FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKA   61 (141)
T ss_dssp             HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             hCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhcc
Confidence            5677899999999999999999999999999999999999999999999887654

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.00  E-value=4.5e-10  Score=68.01  Aligned_cols=57  Identities=16%  Similarity=0.219  Sum_probs=51.3

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEE--cCCCceEEEEeHHHHHHHHHHhh
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVV--DQQRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d~~~~lvGivs~~dil~~~~~~~  121 (126)
                      ++|+++++++++++++.+|+++|.+++.+++||+  |++++++|+++..|+++.+....
T Consensus         5 dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~   63 (131)
T d2riha1           5 ELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRL   63 (131)
T ss_dssp             GGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTC
T ss_pred             HhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccc
Confidence            4788899999999999999999999999999999  55689999999999999876543

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.97  E-value=1.3e-09  Score=67.78  Aligned_cols=58  Identities=17%  Similarity=0.220  Sum_probs=52.3

Q ss_pred             ccccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC--CCceEEEEeHHHHHHHHHHhh
Q 039385           64 NTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ--QRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        64 ~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--~~~lvGivs~~dil~~~~~~~  121 (126)
                      +++|+++++++++++++.+|++.|.+++.+.+||+|+  ++.++|++|..|++..+....
T Consensus        14 ~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~   73 (160)
T d2d4za3          14 GDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRI   73 (160)
T ss_dssp             TSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             HHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhcc
Confidence            3488999999999999999999999999999999984  468999999999999887654

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.96  E-value=5.5e-10  Score=69.47  Aligned_cols=52  Identities=19%  Similarity=0.344  Sum_probs=48.6

Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      .+++++.+++|+.+|++.|.++++.++||+|++|+++|++|..|+++.+...
T Consensus        12 ~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~   63 (153)
T d2ooxe2          12 SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDG   63 (153)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGG
T ss_pred             CCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccc
Confidence            4789999999999999999999999999999999999999999999987654

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.96  E-value=1.5e-09  Score=65.47  Aligned_cols=49  Identities=14%  Similarity=0.257  Sum_probs=45.4

Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++++++++++++.+|+++|.+++++.+||++ +++++|++|..|+++.+.
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~   61 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSY   61 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGG
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhh
Confidence            4789999999999999999999999999998 799999999999988653

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.91  E-value=2.3e-09  Score=67.96  Aligned_cols=52  Identities=13%  Similarity=0.211  Sum_probs=47.4

Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC-CCceEEEEeHHHHHHHHHHh
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ-QRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~~~lvGivs~~dil~~~~~~  120 (126)
                      .+++++.++.|+.+|+..|.++++.++||+|+ +++++|++|..|+++.+...
T Consensus        30 ~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~   82 (179)
T d2ooxe1          30 FRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYY   82 (179)
T ss_dssp             EEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHH
T ss_pred             CcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhc
Confidence            57899999999999999999999999999985 57999999999999987543

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=5.6e-10  Score=68.73  Aligned_cols=52  Identities=17%  Similarity=0.276  Sum_probs=48.0

Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      ++++++.+++|+.+|++.|.++++..+||+|++|+++|+||..|+++.+...
T Consensus        20 ~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~   71 (145)
T d2v8qe1          20 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEK   71 (145)
T ss_dssp             SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSS
T ss_pred             CCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcc
Confidence            5789999999999999999999999999999999999999999998776543

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.89  E-value=1.1e-10  Score=72.24  Aligned_cols=55  Identities=22%  Similarity=0.266  Sum_probs=48.7

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhc-----CCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTK-----HVHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~-----~~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      .+|+++++++++++|+.+|++.|.++     ++..+||+|++|+++|+++..|+......
T Consensus         5 ~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~~~   64 (144)
T d2yvxa2           5 GLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADPR   64 (144)
T ss_dssp             GGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSCTT
T ss_pred             cccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhcccc
Confidence            38999999999999999999999766     47899999999999999999999765433

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.86  E-value=9.3e-10  Score=66.52  Aligned_cols=52  Identities=23%  Similarity=0.333  Sum_probs=47.2

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhc-----CCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTK-----HVHRVWVVDQQRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~-----~~~~lpVvd~~~~lvGivs~~dil~~~  117 (126)
                      +|+++++++++++++.+|++.|.++     +++.+||+|++|+++|+++..+++..-
T Consensus         6 iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~~   62 (127)
T d2ouxa2           6 IMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND   62 (127)
T ss_dssp             HCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC
T ss_pred             hCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeecccccc
Confidence            7889999999999999999999776     478999999999999999999987653

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=1.8e-08  Score=62.59  Aligned_cols=53  Identities=17%  Similarity=0.297  Sum_probs=47.6

Q ss_pred             cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC-CCceEEEEeHHHHHHHHHHhh
Q 039385           69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ-QRLLLGLVSLTDMIRVLRTSI  121 (126)
Q Consensus        69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~~~lvGivs~~dil~~~~~~~  121 (126)
                      .+++++..++|+.+|++.|.++++..+||+|+ +++++|++|..|++..+....
T Consensus        23 ~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~   76 (159)
T d2v8qe2          23 SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYY   76 (159)
T ss_dssp             EEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHH
T ss_pred             CceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhcc
Confidence            47799999999999999999999999999975 679999999999999876543

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.75  E-value=5.8e-11  Score=71.31  Aligned_cols=50  Identities=12%  Similarity=0.138  Sum_probs=16.1

Q ss_pred             ccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC---CCceEEEEeHHHHHHHH
Q 039385           68 QRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ---QRLLLGLVSLTDMIRVL  117 (126)
Q Consensus        68 ~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~~~lvGivs~~dil~~~  117 (126)
                      .++++++.+++++.+|+++|.++++.++||+|+   +++++|+||..|+....
T Consensus         3 ~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~   55 (120)
T d1jr1a4           3 ITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLK   55 (120)
T ss_dssp             ECTTCC----CCCC--CCBC---------------CTTCCC------------
T ss_pred             ccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehh
Confidence            346679999999999999999999999999984   67999999999986544

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.62  E-value=2e-08  Score=60.75  Aligned_cols=52  Identities=15%  Similarity=0.218  Sum_probs=47.0

Q ss_pred             cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385           65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR  118 (126)
Q Consensus        65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~  118 (126)
                      ++|.+++.++.+++++.+|++.|.+++++++||+|  ++++|+++..++++.+.
T Consensus         5 ~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d--~~lvg~~~~~~~~~~~~   56 (135)
T d3ddja2           5 TLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN--EKIEGLLTTRDLLSTVE   56 (135)
T ss_dssp             GTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES--SSEEEEEEHHHHHGGGT
T ss_pred             EEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEe--cceeceeeccchhhhhc
Confidence            37788899999999999999999999999999997  37999999999997753

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1e-07  Score=59.78  Aligned_cols=49  Identities=18%  Similarity=0.170  Sum_probs=43.2

Q ss_pred             EEEeCCCCHHHHHHHHHhcCCCEEEEE--cCCCceEEEEeHHHHHHHHHHh
Q 039385           72 LTCQVDSPLSEVIGKALTKHVHRVWVV--DQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        72 ~~v~~~~~l~~~~~~m~~~~~~~lpVv--d~~~~lvGivs~~dil~~~~~~  120 (126)
                      .++.++.++.+|++.|.+++++.+||+  +++++++|+||.+|++.++...
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~   70 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENA   70 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcc
Confidence            446678899999999999999999999  5577999999999999988654

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=91.63  E-value=0.0019  Score=40.95  Aligned_cols=51  Identities=12%  Similarity=0.028  Sum_probs=45.1

Q ss_pred             ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385           66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV  116 (126)
Q Consensus        66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~  116 (126)
                      ++...+.++..+++-..+...|.+......||++++++++|.|+..|+..+
T Consensus       142 i~~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A  192 (213)
T d1lkvx_         142 VDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEA  192 (213)
T ss_dssp             SCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHH
T ss_pred             hhhhhheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHHHH
Confidence            555567788999999999999999999999999999999999999998554

>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Translation initiation factor IF3, N-terminal domain
family: Translation initiation factor IF3, N-terminal domain
domain: Translation initiation factor IF3, N-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.59  E-value=0.87  Score=23.80  Aligned_cols=28  Identities=21%  Similarity=0.328  Sum_probs=21.0

Q ss_pred             CCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385           92 VHRVWVVDQQRLLLGLVSLTDMIRVLRT  119 (126)
Q Consensus        92 ~~~lpVvd~~~~lvGivs~~dil~~~~~  119 (126)
                      ...+-++|++|.-+|++++.+-+....+
T Consensus        11 a~~VrlI~~~G~~lGv~~~~eAl~~A~~   38 (76)
T d1tifa_          11 AREVRLIDQNGDQLGIKSKQEALEIAAR   38 (76)
T ss_dssp             CSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             CCEEEEECCCCcEeCeecHHHHHHHHHH
Confidence            4567788888888888888887766544

>d3by8a1 d.110.6.1 (A:46-178) Fumarate sensor DcuS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Sensory domain-like
family: Sensory domain of two-component sensor kinase
domain: Fumarate sensor DcuS
species: Escherichia coli [TaxId: 562]

Probab=80.11  E-value=0.48  Score=27.37  Aligned_cols=31  Identities=10%  Similarity=0.059  Sum_probs=22.8

Q ss_pred             cCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385           90 KHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS  120 (126)
Q Consensus        90 ~~~~~lpVvd~~~~lvGivs~~dil~~~~~~  120 (126)
                      .-.-..||.+++|+++|+|+..-.+..+.+.
T Consensus       100 ~~~~~~Pv~~~~G~viGvV~Vg~~~~~ie~~  130 (133)
T d3by8a1         100 ALRVFTPIYDENHKQIGVVAIGLELSRVTQQ  130 (133)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEHHHHHHH
T ss_pred             EEEEEEeeECCCCcEEEEEEEEEEHHHHHHH
Confidence            3446789999899999999876555555443