Citrus Sinensis ID: 039386

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580--
Protein Sequence
MGPRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWRECNFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFGALTKKDSDDTQTPMLENRVVGDGTAEGKLTQLCRIMEANEPSFLAPFQRGDTIVSLGQEKREELRLPFVEVGTGFSSPTKLSSRSSKFTKPDGSRSMLDVRDMPESLAQRSSSMSLGVPAGCSNFVPPFSNGAADGREPCKAHPSFQQGQRSRPILPKPSKTGLTISSETKKSTASQLRIARPPAEGRGKNHLLPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNGCPGESFLSGVTENLPTVSGYSGHFQMLKGSKDPHIDALSEHLSLAEGGNGWHKSENHGQKTNEDSPQKSLLGMEKKRTRNIGSKSKRLLMHSEEAMELRLTWEEAQDLLRPSPSARTKHCHY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccEEcccccccccccccccccccHHcccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccHHHHHHccccccccEEccEEEEcccccccccccEEEcHHHHHHHcccccccccccEEEEEccccEEEEEEEEEcccccEEEEEcccHHHHHHcccccccEEEEEcccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccccccccccccHHHHHHHcccHHHccccHHHHccccccccccccccccEEEEEEEEHHHEEEEcccccEEHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccEcHHHHEEccHccccccccEEEcHHHHHHHcccccccccEEEEEEEccccEEEEEEEEcccccccEEEEccccHHHHHcccccccEEEEEEccccccEEEEEEEccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccHHHcccccccccccEEEEccHHHHHHHccHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mgpricmnpkcrtanthewkkgwllrsgVCADLCYDcgsayenfifcntfhleepgwrecnfcskrlhcgcrasnsFLELldyggvgcrscamsprlhliqrdeipngfgaltkkdsddtqtpmlenrvvgdgtaegKLTQLCRImeanepsflapfqrgdtIVSLGQEkreelrlpfvevgtgfssptklssrsskftkpdgsrsmldvrdmpeslaqrsssmslgvpagcsnfvppfsngaadgrepckahpsfqqgqrsrpilpkpsktgltissetkkstasqlriarppaegrgknhllprywpritDQELQQLSGDLNSTIVPLFEKILsasdagrigrlvlpkacaeayfphisqsegvplrvqdvkgkEWVFQFrfwpnnnsrmyvlEGVTPciqsmqlragdtsMIHSILtrddkitfsridpggklvmgfrkapipgdmqdaqtsaitngcpgesflsgvtenlptvsgysghfqmlkgskdphidALSEHlslaeggngwhksenhgqktnedspqksllgMEKKRTRNIGSKSKRLLMHSEEAMELRLTWEEAQdllrpspsartkhchy
Flexible Loop (DISEMBL)
mgpricmnpkcrtanthewkkgwLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWRECNFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFGALtkkdsddtqtpmlenrvvgdgtaEGKLTQLCRIMEAnepsflapfqrGDTIVSLGQEKREElrlpfvevgtgfssptklssrsskftkpdgsrsmldvRDMPESLAQRSSSMSLGVPAGCSNFVPPFSNGAADGREPCKAhpsfqqgqrsrpilpkpsktgltissetkkstasqlriarppaegrgknhllPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYfphisqsegvpLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSIltrddkitfsridpggkLVMGFRKAPIPGDMQDAQTSAITNGCPGESFLSGVTENLPTVSGYSGHFQMLKGSKDPHIDALSEHLSLAEGGNGWHKsenhgqktnedspqksllgmekkrtrnigskskrllMHSEEAMELRLTWEeaqdllrpspsartkhchy
Low Complexity Region (SEG)
MGPRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWRECNFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFGALTKKDSDDTQTPMLENRVVGDGTAEGKLTQLCRIMEANEPSFLAPFQRGDTIVSLGQEKREELRLPFVEVGTGFssptklssrssKFTKPDGSRSMLDVRDMPESLAQRSSSMSLGVPAGCSNFVPPFSNGAADGREPCKAHPSFQQGQRSRPILPKPSKTGLTISSETKKSTASQLRIARPPAEGRGKNHLLPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNGCPGESFLSGVTENLPTVSGYSGHFQMLKGSKDPHIDALSEHLSLAEGGNGWHKSENHGQKTNEDSPQKSLLGMEKKRTRNIGSKSKRLLMHSEEAMELRLTWEEAQDLLRPSPSARTKHCHY
Disordered region (IsUnstruct)
*****CMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWRECNFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFG*************************EGKLTQLCRIMEANEPSFLAPFQRGDTIVSL********RLPFVEV************************************************************************************************************************HLLPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRIDPGGKLVMGFRKA*****************C***SFLSGVTENLPTVSGYSGHF**************************************************************************************************
Disordered Region (DISOPRED)
**PRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWRECNFCSKRLHCGCRASNSFLELLDYGGVGCRS***********************************************************************************************************************************************************************************************************************************************LFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRI*******************************************************************************************************************KRLLMHSEEAMELRLTWEEAQDL**************
Disordered Region (DISEMBL)
MGPRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWRECNFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFGALTKKDSDDTQTPMLENRVVGDGTAEGKLTQLCRIMEANEPSFLAPFQRGDTIVSLGQEKREELRLPFVEVGT**********************SMLDVRDMP***********LGVPAGCSNFVPPFSNGAADG***************SRPILPKPSKTGLTI*************IARPPAEGRGKNHLLPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNGCPGESFLSGVTENLPTVSGYSGHFQMLKGSKDPHIDALSEHLSLAEGGNGW*****************SLLGMEKKRTRNIGSKSKRLLMHSEEAMELRLTWEEAQDLLR************
Disordered Region (DISPRO)
**PRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWRECNFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPR********************************************Q**********SFLA*FQRGDTIVSLGQEKREELRLPFVEVGTGFSSPTKL***SS*************************SSMS******************************************************************************LPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRIDPGGKLVMGFRKAP**************************************************I*AL********************************************S*SKRLLMHSEEAMELRLTWEEAQDLLRPSPS********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGPRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWRECNFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFGALTKKDSDDTQTPMLENRVVGDGTAEGKLTQLCRIMEANEPSFLAPFQRGDTIVSLGQEKREELRLPFVEVGTGFSSPTKLSSRSSKFTKPDGSRSMLDVRDMPESLAQRSSSMSLGVPAGCSNFVPPFSNGAADGREPCKAHPSFQQGQRSRPILPKPSKTGLTISSETKKSTASQLRIARPPAEGRGKNHLLPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNGCPGESFLSGVTENLPTVSGYSGHFQMLKGSKDPHIDALSEHLSLAEGGNGWHKSENHGQKTNEDSPQKSLLGMEKKRTRNIGSKSKRLLMHSEEAMELRLTWEEAQDLLRPSPSARTKHCHY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	582	2.2.26 [Sep-21-2011]
Q6Z3U3	949	B3 domain-containing prot	yes	no	0.950	0.582	0.466	1e-138
Q8W4L5	790	B3 domain-containing tran	yes	no	0.857	0.631	0.495	1e-136
Q5CCK4	780	B3 domain-containing tran	no	no	0.814	0.607	0.447	1e-120
Q0D5G4	955	B3 domain-containing prot	no	no	0.463	0.282	0.548	5e-76
O65420	713	B3 domain-containing tran	no	no	0.362	0.295	0.379	9e-41
Q9LW31	313	B3 domain-containing tran	no	no	0.171	0.319	0.405	7e-18
Q7XKC5	433	B3 domain-containing prot	no	no	0.149	0.200	0.465	4e-16
Q7XKC4	438	Putative B3 domain-contai	no	no	0.149	0.198	0.465	6e-16
P26307	691	Regulatory protein vivipa	N/A	no	0.189	0.159	0.344	3e-15
Q01593	720	B3 domain-containing tran	no	no	0.151	0.122	0.404	7e-15

>sp|Q6Z3U3|Y7797_ORYSJ B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1

 Score =  491 bits (1264), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 277/594 (46%), Positives = 356/594 (59%), Gaps = 41/594 (6%)

Query: 6   CMNPKCRTANTH----EWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWRECN 61
           CMN  C          EW+KGW LRSG  A LC  CG AYE  +FC+ FH +E GWR+C+
Sbjct: 17  CMNAACGAPAPSPAGGEWRKGWPLRSGGFAVLCDKCGLAYEQLVFCDIFHQKESGWRDCS 76

Query: 62  FCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFGALTKKDSDDTQ 121
           FC KRLHCGC AS +  +LLD GGV C +C  +  +  +    +P  F +   +      
Sbjct: 77  FCGKRLHCGCIASKNSFDLLDSGGVQCVTCIKNSAVQSVPSPVVPKLFSSQNNQRLFGKS 136

Query: 122 TPMLENRVVGDGT--AEGKLTQLCRIMEANEPSFLAPFQRGDTIVSLGQEKRE------E 173
             +L  R +   +   + +   L  I + N P  +   + G +   L Q++ E      +
Sbjct: 137 DDLLSGRPLETSSLMVDARNDDLTIIAKNNLPFMVKNVEAGQSSNILRQKELENGARQIK 196

Query: 174 LRLPFVEVGTGFSSPTKLSSRSSKFTKPDGSRSMLDVRDMPESLAQRSSSMSLGVPA--- 230
             LP + +G     P    S+S+  ++ D ++         ESL++   +MSLG+ +   
Sbjct: 197 WELPTLSIGDMGRIPFLTRSQSALESRRDENKDPTTESTTSESLSEACLNMSLGIASNGN 256

Query: 231 ---GCSNFVPPF---SNGAADGREPCKAHPSFQQGQRSRPILPKPSKTGLTISSETKKST 284
                S    P    + G  +GRE   A   FQ  QR+R  L +P + G     +  K  
Sbjct: 257 KLEATSTVERPMLSPTTGFPEGRELTTALSPFQHAQRARHFLTRPPRVGEGAVFDPTKDM 316

Query: 285 ASQLRIARPPAEGRGKNHLLPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIG 344
              LR+ARPPAEGRG+N LLPRYWPRITDQELQQ+SGD NSTIVPLFEK+LSASDAGRIG
Sbjct: 317 LPHLRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKVLSASDAGRIG 376

Query: 345 RLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQS 404
           RLVLPKACAEAYFP ISQ EG PL +QD KGKEW FQFRFWPNNNSRMYVLEGVTPCIQS
Sbjct: 377 RLVLPKACAEAYFPPISQPEGRPLTIQDAKGKEWHFQFRFWPNNNSRMYVLEGVTPCIQS 436

Query: 405 MQLRAGDTSMIHSILTRDDKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNGCP-G 463
           +QL+AGDT            +TFSRI+PGGKLVMGFRKA     + D+Q SAI NG   G
Sbjct: 437 LQLQAGDT------------VTFSRIEPGGKLVMGFRKATNTVSLPDSQISAIANGSILG 484

Query: 464 ESFLSGVTENLPTVSGYSGHFQMLKGSKDPHIDALSE-HLSLAEGGNGWHKSENHGQKTN 522
           ++  S   ENL  VSGYSG  Q +KG+ D H  ++ + H++ A+G   W K++  G + +
Sbjct: 485 DTLFSSTNENLAIVSGYSGFLQSIKGAADLHTSSIYDHHVNSADGDVSWLKTDKFGSRPD 544

Query: 523 EDSPQKSLLGMEKKRTRNIGSKSKRLLMHSEEAMELRLTWEEAQDLLRPSPSAR 576
           E S Q        KR RNIGSKS+RL M +EEA EL+L W+E Q+LLRP+P+A+
Sbjct: 545 EGSLQF------LKRGRNIGSKSRRLSMDAEEAWELKLYWDEVQELLRPAPTAK 592

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8W4L5|VAL1_ARATH B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana GN=VAL1 PE=1 SV=1

 Score =  484 bits (1246), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 287/579 (49%), Positives = 354/579 (61%), Gaps = 80/579 (13%)

Query: 1   MGPRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWREC 60
           MG ++CMN  C T +T EWKKGW LRSG+ ADLCY CGSAYE+ +FC  FH ++ GWREC
Sbjct: 6   MGSKMCMNASCGTTSTVEWKKGWPLRSGLLADLCYRCGSAYESSLFCEQFHKDQSGWREC 65

Query: 61  NFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFGALTKKDSDDT 120
             CSKRLHCGC AS   +EL+DYGGVGC +CA   +L+L  R E P  F  L  K   D 
Sbjct: 66  YLCSKRLHCGCIASKVTIELMDYGGVGCSTCACCHQLNLNTRGENPGVFSRLPMKTLADR 125

Query: 121 QTPMLENRVVGDGTAEGKLTQLCRIMEANEPSFLAPFQRGDTIVSLGQEKREELRLPFVE 180
           Q    E+     G  EG L             F  P         +G +KREE  +P   
Sbjct: 126 QHVNGES----GGRNEGDL-------------FSQPL-------VMGGDKREEF-MPHRG 160

Query: 181 VGTGFSSPTKLSSRSSKFT--KPDGSRSMLDVRDMPESLAQRSSSMSLGVPAGCSNFVPP 238
            G       KL S  S  T  + D +  M +   +  SL     +M L V    + F P 
Sbjct: 161 FG-------KLMSPESTTTGHRLDAAGEMHESSPLQPSL-----NMGLAV----NPFSPS 204

Query: 239 FSNGAADGREPCKAHPSFQQGQRSRPILPKPSKTGLTISSETKKSTASQLRIARPPAEGR 298
           F+  A +G +      S      +  IL KPS+    IS+    S ++Q RI RPP EGR
Sbjct: 205 FATEAVEGMKHISPSQSNMVHCSASNILQKPSRPA--ISTPPVASKSAQARIGRPPVEGR 262

Query: 299 GKNHLLPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFP 358
           G+ HLLPRYWP+ TD+E+QQ+SG+LN  IVPLFEK LSASDAGRIGRLVLPKACAEAYFP
Sbjct: 263 GRGHLLPRYWPKYTDKEVQQISGNLNLNIVPLFEKTLSASDAGRIGRLVLPKACAEAYFP 322

Query: 359 HISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSI 418
            ISQSEG+PL++QDV+G+EW FQFR+WPNNNSRMYVLEGVTPCIQSM L+AGDT      
Sbjct: 323 PISQSEGIPLKIQDVRGREWTFQFRYWPNNNSRMYVLEGVTPCIQSMMLQAGDT------ 376

Query: 419 LTRDDKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNGCPGE-SFLSGVTENLPTV 477
                 +TFSR+DPGGKL+MG RKA   GDMQ      +TNG   E +  SGVTEN P++
Sbjct: 377 ------VTFSRVDPGGKLIMGSRKAANAGDMQGC---GLTNGTSTEDTSSSGVTENPPSI 427

Query: 478 SGYSGHFQMLKGSKDPHIDALSEHLSLAEGGNGWHKSENHGQKTNEDSPQKSLLGMEKKR 537
           +G S    + K      ++ + E+L+          SE +G +  +D  +      EKKR
Sbjct: 428 NGSSCISLIPK-----ELNGMPENLN----------SETNGGRIGDDPTRVK----EKKR 468

Query: 538 TRNIGSKSKRLLMHSEEAMELRLTWEEAQDLLRPSPSAR 576
           TR IG+K+KRLL+HSEE+MELRLTWEEAQDLLRPSPS +
Sbjct: 469 TRTIGAKNKRLLLHSEESMELRLTWEEAQDLLRPSPSVK 507

Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5CCK4|VAL2_ARATH B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1

 Score =  433 bits (1113), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 259/579 (44%), Positives = 312/579 (53%), Gaps = 105/579 (18%)

Query: 4   RICMNPKCRTANTH-EWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWRECNF 62
           ++CMN  C  A+T  EWKKGW +RSG  A LC  CG AYE  IFC  FH +E GWRECN 
Sbjct: 5   KVCMNALCGAASTSGEWKKGWPMRSGDLASLCDKCGCAYEQSIFCEVFHAKESGWRECNS 64

Query: 63  CSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFGALTKKDSDDTQT 122
           C KRLHCGC AS   +ELL+ GGV C SCA    L  +      NG              
Sbjct: 65  CDKRLHCGCIASRFMMELLENGGVTCISCAKKSGLISMNVSHESNG-------------- 110

Query: 123 PMLENRVVGDGTAEGKLTQLCRIMEANEPSFLAPFQRGDTIVSLGQEKREELRLPFVEVG 182
                    D  +      +  ++E      L  FQR D   S  Q K+EE  LP     
Sbjct: 111 --------KDFPSFASAEHVGSVLERTNLKHLLHFQRIDPTHSSLQMKQEESLLP----- 157

Query: 183 TGFSSPTKLSSRSSKFTKPDGSRSMLDVRDMPESLAQRSSSMSLGVPAGCSNFVPPFSNG 242
                                  S LD         + S+  +L +  G +    PF + 
Sbjct: 158 -----------------------SSLDALRHKTERKELSAQPNLSISLGPTLMTSPFHDA 194

Query: 243 AADGREPCKAHPSFQQGQRSRPILPKPSKTG-LTISSETKKSTASQLRIARPPAEGRGKN 301
           A D R   K +  FQ   RSR +LPKP+ +  +    E   S  SQ+ +ARPP EGRGK 
Sbjct: 195 AVDDRS--KTNSIFQLAPRSRQLLPKPANSAPIAAGMEPSGSLVSQIHVARPPPEGRGKT 252

Query: 302 HLLPRYWPRITDQELQQLSGDL----NSTIVPLFEKILSASDAGRIGRLVLPKACAEAYF 357
            LLPRYWPRITDQEL QLSG      NS I+PLFEK+LSASDAGRIGRLVLPKACAEAYF
Sbjct: 253 QLLPRYWPRITDQELLQLSGQYPHLSNSKIIPLFEKVLSASDAGRIGRLVLPKACAEAYF 312

Query: 358 PHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHS 417
           P IS  EG+PL++QD+KGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQL+AGDT     
Sbjct: 313 PPISLPEGLPLKIQDIKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT----- 367

Query: 418 ILTRDDKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNGCPGESFLSGVTENLPTV 477
                  +TFSR +P GKLVMG+RKA              TN                  
Sbjct: 368 -------VTFSRTEPEGKLVMGYRKA--------------TN------------------ 388

Query: 478 SGYSGHFQMLKGSKDPHIDALSEHLSLAEGGNGWHKSENHGQKTNEDSPQKSLLGMEKKR 537
              S   QM KGS +P+++  S  L+   G   W K E       ++   +S L   +KR
Sbjct: 389 ---STATQMFKGSSEPNLNMFSNSLNPGCGDINWSKLEKSEDMAKDNLFLQSSLTSARKR 445

Query: 538 TRNIGSKSKRLLMHSEEAMELRLTWEEAQDLLRPSPSAR 576
            RNIG+KSKRLL+ S + +EL++TWEEAQ+LLRP  S +
Sbjct: 446 VRNIGTKSKRLLIDSVDVLELKITWEEAQELLRPPQSTK 484

Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0D5G4|Y7633_ORYSJ B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2

 Score =  285 bits (730), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 159/290 (54%), Positives = 191/290 (65%), Gaps = 20/290 (6%)

Query: 286 SQLRIARPPAEGRGKNHLLPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGR 345
           +QLR  RP  + + ++ LLPRYWPRITDQELQ LSGD NS I PLFEK+LSASDAGRIGR
Sbjct: 408 AQLRNGRPRMDAKARSQLLPRYWPRITDQELQHLSGDSNSVITPLFEKMLSASDAGRIGR 467

Query: 346 LVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSM 405
           LVLPK CAEAYFP ISQ+EG+PL+VQD  GKEWVFQFRFWPNNNSRMYVLEGVTPCIQSM
Sbjct: 468 LVLPKKCAEAYFPAISQAEGLPLKVQDATGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSM 527

Query: 406 QLRAGDTSMIHSILTRDDKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNGCPGES 465
           QL+AGDT            +TFSRIDP GKLVMGFRKA      QD  T       P   
Sbjct: 528 QLQAGDT------------VTFSRIDPEGKLVMGFRKATNLSAEQDQPTKPANGVLPPPE 575

Query: 466 FLSGVTENLPTVSGYSGHFQMLKGSKDPHIDALSEHLSLAEGGNGWHKSENHGQKTNEDS 525
             + V   +P  S  +   + +K + +    +  E  +  +   G    +  G  T+  S
Sbjct: 576 ANNKVV--VPDSSPNAAVPRPIKVNTESKSSSPVEQATACKIDKG-ALPQKEGPGTSSSS 632

Query: 526 PQKSLLGMEKKRTRNIGSKSKRLLMHSEEAMELRLTWEEAQDLLRPSPSA 575
           P    L +++K T ++G K KR  M SEE+MEL++TWEEAQ+LLRP P A
Sbjct: 633 P----LPVKRKAT-SVGPKIKRFHMDSEESMELKITWEEAQELLRPPPKA 677

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O65420|VAL3_ARATH B3 domain-containing transcription factor VAL3 OS=Arabidopsis thaliana GN=VAL3 PE=4 SV=3

 Score =  168 bits (426), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 146/282 (51%), Gaps = 71/282 (25%)

Query: 296 EGRGKNHLLPRYWPRIT--DQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACA 353
           E  GK  ++PR+WP+++  +Q LQ  S +  S + PLFEKILSA+D G+  RLVLPK  A
Sbjct: 291 ETPGKYQVVPRFWPKVSYKNQVLQNQSKESESVVTPLFEKILSATDTGK--RLVLPKKYA 348

Query: 354 EAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTS 413
           EA+ P +S ++GVPL VQD  GKEW FQFRFWP++  R+YVLEGVTP IQ++QL+AGDT 
Sbjct: 349 EAFLPQLSHTKGVPLTVQDPMGKEWRFQFRFWPSSKGRIYVLEGVTPFIQTLQLQAGDT- 407

Query: 414 MIHSILTRDDKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNGCPGESFLSG-VTE 472
                      + FSR+DP  KL++GFRKA I      A  + + +  P E   S  +T+
Sbjct: 408 -----------VIFSRLDPERKLILGFRKASITQSSDQADPADMHS--PFEVKKSAYITK 454

Query: 473 NLPTVSGYSGHFQMLKGSKDPHIDALSEHLSLAEGGNGWHKSENHGQKTNEDSPQKSLLG 532
             P V   SG                                                  
Sbjct: 455 ETPGVECSSG-------------------------------------------------- 464

Query: 533 MEKKRTRNIGSKSKRLLMHSEEAMELRLTWEEAQDLLRPSPS 574
             KK++  + ++SKR  +   +   L+LTWEEAQ  L P P+
Sbjct: 465 --KKKSSMMITRSKRQKVEKGDDNLLKLTWEEAQGFLLPPPN 504

May be involved in plant development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW31|FUS3_ARATH B3 domain-containing transcription factor FUS3 OS=Arabidopsis thaliana GN=FUS3 PE=2 SV=2

 Score = 92.8 bits (229), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)

Query: 330 LFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKG-KEWVFQFRFWPNN 388
           LF+K L  SD   + R++LPK  AEA+ P +   EG+P+R++D+ G   W F++R+WPNN
Sbjct: 91  LFQKELKNSDVSSLRRMILPKKAAEAHLPALECKEGIPIRMEDLDGFHVWTFKYRYWPNN 150

Query: 389 NSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSR 429
           NSRMYVLE     + +  L+ GD  M++  L  ++ +  +R
Sbjct: 151 NSRMYVLENTGDFVNAHGLQLGDFIMVYQDLYSNNYVIQAR 191

Transcription regulator involved in gene regulation during late embryogenesis. Its expression to the epidermis is sufficient to control foliar organ identity by regulating positively the synthesis abscisic acid (ABA) and negatively gibberellin production. Negatively regulates TTG1 in the embryo. Positively regulates the abundance of the ABI3 protein in the seed.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XKC5|IDEFH_ORYSJ B3 domain-containing protein Os04g0676600 OS=Oryza sativa subsp. japonica GN=Os04g0676600 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 57/88 (64%), Gaps = 1/88 (1%)

Query: 330 LFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGK-EWVFQFRFWPNN 388
           +  K L+ SD G IGR+V+PK  AEA+ P + Q EGV L++ D K +  W F++RFWPNN
Sbjct: 296 ILRKELTNSDVGNIGRIVMPKRDAEAHLPALHQREGVMLKMDDFKLETTWNFKYRFWPNN 355

Query: 389 NSRMYVLEGVTPCIQSMQLRAGDTSMIH 416
            SRMYVLE     ++   L+ GD  +I+
Sbjct: 356 KSRMYVLESTGGFVKQHVLQTGDIFIIY 383

Probable transcription regulator that binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XKC4|Y4765_ORYSJ Putative B3 domain-containing protein Os04g0676650 OS=Oryza sativa subsp. japonica GN=Os04g0676650 PE=3 SV=2

 Score = 86.3 bits (212), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 57/88 (64%), Gaps = 1/88 (1%)

Query: 330 LFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGK-EWVFQFRFWPNN 388
           +  K L+ SD G IGR+V+PK  AEA+ P + Q EGV L++ D K +  W F++RFWPNN
Sbjct: 301 ILRKELTNSDVGNIGRIVMPKRDAEAHLPALHQREGVTLKMDDFKFETTWNFKYRFWPNN 360

Query: 389 NSRMYVLEGVTPCIQSMQLRAGDTSMIH 416
            SRMYVLE     ++   L+ GD  +I+
Sbjct: 361 KSRMYVLESTGGFVKHHGLQTGDIFIIY 388

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P26307|VIV1_MAIZE Regulatory protein viviparous-1 OS=Zea mays GN=VP1 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 12/122 (9%)

Query: 330 LFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDV-KGKEWVFQFRFWPNN 388
           L +K+L  SD G +GR+VLPK  AE + P +   +G+ + ++D+   + W  ++RFWPNN
Sbjct: 516 LLQKVLKQSDVGSLGRIVLPKKEAEVHLPELKTRDGISIPMEDIGTSRVWNMRYRFWPNN 575

Query: 389 NSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRIDPGGKLVMGFRKAPIPGD 448
            SRMY+LE     ++S +L+ GD  +I           +S +  G  L+ G +  P P  
Sbjct: 576 KSRMYLLENTGEFVRSNELQEGDFIVI-----------YSDVKSGKYLIRGVKVRPPPAQ 624

Query: 449 MQ 450
            Q
Sbjct: 625 EQ 626

Transcriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly.

Zea mays (taxid: 4577)

>sp|Q01593|ABI3_ARATH B3 domain-containing transcription factor ABI3 OS=Arabidopsis thaliana GN=ABI3 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 1/89 (1%)

Query: 330 LFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDV-KGKEWVFQFRFWPNN 388
           L +K+L  SD G +GR+VLPK  AE + P +   +G+ L ++D+   + W  ++RFWPNN
Sbjct: 571 LLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISLAMEDIGTSRVWNMRYRFWPNN 630

Query: 389 NSRMYVLEGVTPCIQSMQLRAGDTSMIHS 417
            SRMY+LE     +++  L+ GD  +I+S
Sbjct: 631 KSRMYLLENTGDFVKTNGLQEGDFIVIYS 659

Participates in abscisic acid-regulated gene expression during seed development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	582
255565913	861	transcription factor, putative [Ricinus	0.907	0.613	0.615	0.0
224145431	786	predicted protein [Populus trichocarpa]	0.833	0.617	0.590	1e-180
359478914	881	PREDICTED: B3 domain-containing protein	0.922	0.609	0.577	1e-175
356537702	898	PREDICTED: B3 domain-containing transcri	0.948	0.614	0.556	1e-170
356569441	895	PREDICTED: B3 domain-containing transcri	0.948	0.616	0.558	1e-170
225439689	924	PREDICTED: B3 domain-containing protein	0.958	0.603	0.559	1e-169
224140599	917	predicted protein [Populus trichocarpa]	0.943	0.598	0.56	1e-167
297735542	856	unnamed protein product [Vitis vinifera]	0.917	0.623	0.550	1e-165
297745757	708	unnamed protein product [Vitis vinifera]	0.840	0.690	0.548	1e-161
224091110	714	predicted protein [Populus trichocarpa]	0.874	0.712	0.554	1e-158

>gi|255565913|ref|XP_002523945.1| transcription factor, putative [Ricinus communis] gi|223536792|gb|EEF38432.1| transcription factor, putative [Ricinus communis]

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/578 (61%), Positives = 411/578 (71%), Gaps = 50/578 (8%)

Query: 1   MGPRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWREC 60
           MG +ICMN  C    THEW++GW LRSG  A LCY CGSAYEN ++C+TFHLEEPGWREC
Sbjct: 1   MGSKICMNASCGVTKTHEWRRGWTLRSGGYALLCYTCGSAYENSVYCDTFHLEEPGWREC 60

Query: 61  NFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFGALTKKDSDDT 120
             C+KRLHCGC AS S  ELLDYGGV C  C  S +LH I  DEIP GFG+LT  ++ D 
Sbjct: 61  YNCNKRLHCGCIASKSLFELLDYGGVECTGCVKSSQLHSIHGDEIPKGFGSLTLNNAGDP 120

Query: 121 QTPMLENRVVGDGTAEGKLTQLCRIMEANEPSFLAPFQRGDTIVSLGQEKREELRLPFVE 180
            +  LENR       +G+L QLCR+MEANEP  L   +  DT   LGQ ++EE+  P  E
Sbjct: 121 DSIPLENRATNGALDDGRLAQLCRLMEANEPQLLCQSEGADTNAGLGQFRQEEVMHPIGE 180

Query: 181 VGTGFSSPTKLSSRSSKFTKPDGSRSMLDVRDMPESLAQRSSSMSLGVPAGCSNFVPPFS 240
            GT FS  ++ S   SKF  P+G RS+LD+RDM  S AQ S +M+LG P+G ++F+  ++
Sbjct: 181 AGTSFSIASQSSVVPSKF--PNGGRSILDMRDMHGSHAQPSLNMALGAPSGTTSFIQ-YA 237

Query: 241 NGAADGREPCKAHPSFQQGQRSRPILPKPSKTGLTISSETKKSTASQLRIARPPAEGRGK 300
            GA DGRE  K  P F QGQRSRPILPKPSKTG + SS+T K+  ++LRIARPPAEGRGK
Sbjct: 238 CGAVDGREQGKT-PPFLQGQRSRPILPKPSKTGFSGSSDTNKTAVTELRIARPPAEGRGK 296

Query: 301 NHLLPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHI 360
           N LLPRYWPRITDQELQQLSGDLNS IVPLFEK+LSASDAGRIGRLVLPKACAEAYFP I
Sbjct: 297 NQLLPRYWPRITDQELQQLSGDLNSNIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPI 356

Query: 361 SQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILT 420
           SQSEG+PLR+QDVKG+EW FQFRFWPNNNSRMYVLEGVTPCIQ+M+LRAGDT        
Sbjct: 357 SQSEGLPLRIQDVKGREWTFQFRFWPNNNSRMYVLEGVTPCIQAMKLRAGDT-------- 408

Query: 421 RDDKITFSRIDPGGKLVMGFRKAPIPG-DMQDAQTSAITNGCP-GESFLSGVTENLPTVS 478
               ITFSRIDPGGKLV+GFRKA     D QDAQTSA+ NG    E+  SG      TVS
Sbjct: 409 ----ITFSRIDPGGKLVVGFRKATNNSLDTQDAQTSALPNGAASAETSFSGTV----TVS 460

Query: 479 GYSGHFQMLKGSKDPHIDALSEHLSLAEGGNGWHKSENHGQKTNEDSPQKSLLGMEKKRT 538
                                     A+G  G +KSEN+G + N D+ Q+S    EKKRT
Sbjct: 461 --------------------------ADGDTGGNKSENYGGRINGDAVQQST--AEKKRT 492

Query: 539 RNIGSKSKRLLMHSEEAMELRLTWEEAQDLLRPSPSAR 576
           RNIG KSKRLLMHSE+A+ELRLTWEEAQDLLRP PS +
Sbjct: 493 RNIGPKSKRLLMHSEDALELRLTWEEAQDLLRPPPSVK 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145431|ref|XP_002325640.1| predicted protein [Populus trichocarpa] gi|222862515|gb|EEF00022.1| predicted protein [Populus trichocarpa]

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 340/576 (59%), Positives = 389/576 (67%), Gaps = 91/576 (15%)

Query: 1   MGPRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWREC 60
           MG +ICMN  C+T  THEWK+GW LRSG  A LC++CGSAYE+ +FC+TFH EEPGWREC
Sbjct: 1   MGTKICMNASCQTTTTHEWKRGWPLRSGGHALLCFNCGSAYEDSLFCDTFHSEEPGWREC 60

Query: 61  NFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFGALTKKDSDDT 120
           N C+KRLHCGC AS   LELLDYGGVGC SCA S RLH             L K  +  T
Sbjct: 61  NICTKRLHCGCIASKFLLELLDYGGVGCSSCARSSRLH-----------SRLNKLHA--T 107

Query: 121 QTPMLENRVVGDGTAEGKLTQLCRIMEANEPSFLAPFQRGDTIVSLGQEKREELRLPFVE 180
                E+    +G                                LGQ ++EE+R    +
Sbjct: 108 HVYGFEDFANANGC-------------------------------LGQFRQEEIRHAIGD 136

Query: 181 VGTGFSSPTKLSSRSSKFTKPDGSRSMLDVRDMPESLAQRSSSMSLGVPAGCSNFVPPFS 240
           +GTGFS+ T  S  SSKFT PD   S+LD+RDM  SL++ S SM+LG P+G +NF P F 
Sbjct: 137 IGTGFSNMTLPSVGSSKFTNPDNMSSLLDMRDMHCSLSEPSLSMALGAPSGTTNFAP-FP 195

Query: 241 NGAADGREPCKAHPSFQQGQRSRPILPKPSKTGLTISSETKKSTASQLRIARPPAEGRGK 300
            GA +GRE  K   SFQQGQRSRPILPKPSK GL  SSE  K +AS+LRIARPPAEGRGK
Sbjct: 196 GGAVEGREQGKTPSSFQQGQRSRPILPKPSKPGLLSSSENNKGSASELRIARPPAEGRGK 255

Query: 301 NHLLPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHI 360
           N LLPRYWPRITDQELQQLSGDLNS IVPLFEKILSASDAGRIGRLVLPKACAEAYFP I
Sbjct: 256 NQLLPRYWPRITDQELQQLSGDLNSNIVPLFEKILSASDAGRIGRLVLPKACAEAYFPPI 315

Query: 361 SQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILT 420
           SQSEG+PL++QD+KG+EW FQFRFWPNNNSRMYVLEGVTPCIQSMQL+AGDT        
Sbjct: 316 SQSEGIPLKIQDIKGREWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLKAGDT-------- 367

Query: 421 RDDKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNGCPGESFLSGVTENLPTVSGY 480
               ITFSRIDPGGKLVMGFRK+                                  +  
Sbjct: 368 ----ITFSRIDPGGKLVMGFRKS----------------------------------TNN 389

Query: 481 SGHFQMLKGSKDPHIDALSEHLSLAEGGNGWHKSENHGQKTNEDSPQKSLLGMEKKRTRN 540
           +   Q++KGS+DP +++LSEHL LA+G  GW+ SENHG   N D  Q++    EKKRTRN
Sbjct: 390 NEDIQIIKGSRDPDLNSLSEHLKLADGYIGWNNSENHGGGINGDLLQQTTAPTEKKRTRN 449

Query: 541 IGSKSKRLLMHSEEAMELRLTWEEAQDLLRPSPSAR 576
           IG KSKRLLMHSE+AMELRLTWEEAQDLLRP PS +
Sbjct: 450 IGPKSKRLLMHSEDAMELRLTWEEAQDLLRPPPSVK 485

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478914|ref|XP_002276326.2| PREDICTED: B3 domain-containing protein Os07g0679700-like [Vitis vinifera]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 332/575 (57%), Positives = 391/575 (68%), Gaps = 38/575 (6%)

Query: 1   MGPRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWREC 60
           MG RIC N  C T  + EWKKGW ++SG   DLCY CGSAYEN +FC TFH EE GWR+C
Sbjct: 1   MGSRICKNKWCGTTASFEWKKGWTIKSGAVVDLCYKCGSAYENLVFCETFHQEEDGWRQC 60

Query: 61  NFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFGALTKKDSDDT 120
           + C KR+HCGC  SN   E LDYGGV C SC  SP+ H +Q DE PN FG  T    ++ 
Sbjct: 61  SLCHKRIHCGCIVSNYQFEALDYGGVRCSSCLKSPQCHPMQNDETPNEFGTSTANSINNL 120

Query: 121 QTPMLENRVVGDGTAEGKLTQLCRIMEANEPSFLAPFQRGDTIVSLGQEKREELRLPFVE 180
           Q P +ENR+  +   +    QL + MEA+E + L   Q+GD  VSLGQ K+++      E
Sbjct: 121 QHPCVENRMNCNIVGKDNFMQLGKTMEADELNHLLQSQKGDANVSLGQIKQDDSMHAVRE 180

Query: 181 VGTGFSSPTKLSSRSSKFTKPDGSRSMLDVRDMPESLAQRSSSMSLGVPAGCSNFVPPFS 240
           V T F + +  S   S+F K D S  ML  +D+ ESL Q S ++SL   +G  NF+ PF 
Sbjct: 181 VNTIFPTTSLPSIGPSEFAKSDNSIPMLMGKDVYESLVQPSLNISLSSSSGPPNFLLPFP 240

Query: 241 NGAADGREPCKAHPSFQQGQRSRPILPKPSKTGLTISSETKKSTASQLRIARPPAEGRGK 300
             A +G E  K+  +FQQGQR+R ILPKP  + L+I SE  KS   ++RIARPPAEGRG+
Sbjct: 241 GNAVEGMEHSKSAFTFQQGQRTRHILPKPPNSSLSIGSEANKSMVPEIRIARPPAEGRGR 300

Query: 301 NHLLPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHI 360
           N LLPRYWPRITDQELQQLSGDLNSTIVPLFEK+LSASDAGRIGRLVLPKACAEAYFP I
Sbjct: 301 NQLLPRYWPRITDQELQQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPI 360

Query: 361 SQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILT 420
           SQSEG+PLRVQD KG EW FQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDT        
Sbjct: 361 SQSEGLPLRVQDAKGTEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDT-------- 412

Query: 421 RDDKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNGCPGESFLSGVTENLPTVSGY 480
               + FSRIDPG KLV+G RKA    D+QDAQTSA++NG               T+ G 
Sbjct: 413 ----VIFSRIDPGNKLVIGCRKASNCVDVQDAQTSALSNG---------------TIYGG 453

Query: 481 SGHFQMLKGSKDPHIDALSEHLSLAEGGNGWHKSENHGQKTNEDSPQKSLLGMEKKRTRN 540
           S  F ML     P+I  LS      +G   WH +E    K NEDSPQ+SLL  EKKRTRN
Sbjct: 454 SS-FSMLC----PNISILS------DGDIVWHTNEKCAGKMNEDSPQQSLLIPEKKRTRN 502

Query: 541 IGSKSKRLLMHSEEAMELRLTWEEAQDLLRPSPSA 575
           IGSK+KRLLMHSE+A+EL++TW+E QD+LRP PS 
Sbjct: 503 IGSKNKRLLMHSEDALELKITWQETQDILRPPPSV 537

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537702|ref|XP_003537364.1| PREDICTED: B3 domain-containing transcription repressor VAL1-like [Glycine max]

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 321/577 (55%), Positives = 394/577 (68%), Gaps = 25/577 (4%)

Query: 1   MGPRICM-NPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWRE 59
           MG  IC+ N  C    THEW+KGW LRSG  A LC  CGSAYEN +FCN FH ++ GWRE
Sbjct: 1   MGSDICVVNGSC----THEWRKGWPLRSGGFAQLCCKCGSAYENSVFCNKFHRQQTGWRE 56

Query: 60  CNFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFGALTKKDSDD 119
           CNFC+K +H GC  S S    LD+GG+GC SC  + +L +++  E PN   +  K ++ D
Sbjct: 57  CNFCNKPIHSGCIVSRSLFGYLDFGGIGCVSCVNTTQLSMMRNTENPNVSVSSIKNNASD 116

Query: 120 TQTPMLENRVVGDGTAEGKLTQLCRIMEANEPSFLAPFQRGDTIVSLGQEKREELRLPFV 179
             +   + R++  G  EGKL Q C+I+EA+E S     Q    I   GQ   +E +  F 
Sbjct: 117 RHSAHFDGRLLVGGVDEGKLMQFCKIIEASESSHWNHAQSDGIIAHHGQ-NNQEAKCSFR 175

Query: 180 EVGTGFSSPTKLSSRSSKFTKPDGSRSMLDVRDMPESLAQRSSSMSLGVPAGCSNFVPPF 239
           E   GFS+  K S +S  F   + +RS  ++++M ES AQ S SM LG  +G ++ VPP 
Sbjct: 176 EGDIGFSNVRKPSVQSLTFATLENNRSTWEIKNMHESNAQPSFSMYLGNASG-NDSVPPS 234

Query: 240 SNGAADGREPCKAHPSFQQGQRSRPILPKPSKTGLTISSETKKSTASQLRIARPPAEGRG 299
           +  A +GR   K  P FQ   RSRPI PKP K+GLT++ ET K   SQ R+ARPPA+GRG
Sbjct: 235 AGEAVEGRLEGKTSPPFQ---RSRPICPKPLKSGLTMNVETDKGAISQSRVARPPADGRG 291

Query: 300 KNHLLPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPH 359
           KN LLPRYWPRITDQEL++L+GDL ST+VPLFEK+LSASDAGRIGRLVLPKACAEAYFP 
Sbjct: 292 KNQLLPRYWPRITDQELERLAGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPP 351

Query: 360 ISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSIL 419
           ISQSEGVPLR+QDVKG EW FQFRFWPNNNSRMYVLEGVTPCIQ+MQL AGDT       
Sbjct: 352 ISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLCAGDT------- 404

Query: 420 TRDDKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNGCPGESFLSGVTENLPTVSG 479
                +TFSRIDPGGKLVMGFRKA    D QDA TSA +N   G   +S  TENLP+ S 
Sbjct: 405 -----VTFSRIDPGGKLVMGFRKASNSTDTQDASTSAQSNSAKGT--ISSGTENLPSGSN 457

Query: 480 YSGHFQMLKGSKDPHIDALSEHLSLAEGGNGWHKSENHGQKTNEDSPQKSLLGMEKKRTR 539
           ++     L G+ + H++  +EHL L  G  G  K+EN+ + TN  SPQ+ +  +EKKRTR
Sbjct: 458 HANLLHSLTGNVETHLNGHTEHLHLGTGTAGLLKTENN-EMTNSSSPQQQISVLEKKRTR 516

Query: 540 NIGSKSKRLLMHSEEAMELRLTWEEAQDLLRPSPSAR 576
           NIG KSKRLL+ +E+AMEL+LTWEEAQDLLRP PS +
Sbjct: 517 NIGPKSKRLLIDNEDAMELKLTWEEAQDLLRPPPSVK 553

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569441|ref|XP_003552909.1| PREDICTED: B3 domain-containing transcription repressor VAL1-like [Glycine max]

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 322/577 (55%), Positives = 392/577 (67%), Gaps = 25/577 (4%)

Query: 1   MGPRICM-NPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWRE 59
           MG  IC+ N  C    THEW+KGW LRSG  A LC  CGSAYEN +FCN FH ++ GWRE
Sbjct: 1   MGSNICVVNGSC----THEWRKGWPLRSGGFAQLCCKCGSAYENSVFCNKFHCQQTGWRE 56

Query: 60  CNFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFGALTKKDSDD 119
           CNFC+K +HCGC  S S  E LD+GG+GC SC  + +L +++  E PN      K ++ D
Sbjct: 57  CNFCNKPIHCGCIVSRSLFEYLDFGGIGCVSCVNTTQLSMMRNMENPNVTVLSIKNNAGD 116

Query: 120 TQTPMLENRVVGDGTAEGKLTQLCRIMEANEPSFLAPFQRGDTIVSLGQEKREELRLPFV 179
             +   + R+   G  EGKL Q C+I+EA+E S     QR   I   GQ K +E +  F 
Sbjct: 117 RHSAHFDGRLPVGGVDEGKLMQFCKIIEASESSRWNHAQRDGIIAHRGQ-KNQEAKSSFR 175

Query: 180 EVGTGFSSPTKLSSRSSKFTKPDGSRSMLDVRDMPESLAQRSSSMSLGVPAGCSNFVPPF 239
           EV  GFS+    S +S  F   + +RS  ++++M ES  + S SM LG  +G +N VPP 
Sbjct: 176 EVEIGFSNVMNPSVQSLTFATLENNRSTWEIKNMHESNTKPSLSMYLGNASG-NNSVPPS 234

Query: 240 SNGAADGREPCKAHPSFQQGQRSRPILPKPSKTGLTISSETKKSTASQLRIARPPAEGRG 299
           +  A +GR   K  P FQ    SR I PKP K GLT++ ET K T SQ R+ARPPA+GRG
Sbjct: 235 AGEAVEGRLDGKTSPPFQG---SRSIFPKPLKNGLTMNMETNKGTMSQSRVARPPADGRG 291

Query: 300 KNHLLPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPH 359
           KN LLPRYWPRITD+EL++L+GDL ST+VPLFEK+LSASDAGRIGRLVLPKACAEAYFP 
Sbjct: 292 KNQLLPRYWPRITDEELERLAGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPP 351

Query: 360 ISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSIL 419
           ISQSEGVPLR+QDVKG EW FQFRFWPNNNSRMYVLEGVTPCIQ+MQL AGDT       
Sbjct: 352 ISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLCAGDT------- 404

Query: 420 TRDDKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNGCPGESFLSGVTENLPTVSG 479
                +TFSRIDPGGKLVMGFRKA    D QDA TSA +N   G   +S  TENLP+ S 
Sbjct: 405 -----VTFSRIDPGGKLVMGFRKASNSTDTQDASTSAQSNSAKGT--VSSGTENLPSGSN 457

Query: 480 YSGHFQMLKGSKDPHIDALSEHLSLAEGGNGWHKSENHGQKTNEDSPQKSLLGMEKKRTR 539
            +     L G+ + H++  +EHL L  G  G  K+EN+ + TN  SPQ+ +  +EKKRTR
Sbjct: 458 NADLLHSLTGNVECHLNGHTEHLHLGTGTAGLLKTENN-EMTNSSSPQQQISVLEKKRTR 516

Query: 540 NIGSKSKRLLMHSEEAMELRLTWEEAQDLLRPSPSAR 576
           NIG KSKRLL+ +E+AMEL+LTWEEAQDLLRP PS +
Sbjct: 517 NIGPKSKRLLIDNEDAMELKLTWEEAQDLLRPPPSVK 553

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439689|ref|XP_002267484.1| PREDICTED: B3 domain-containing protein Os07g0679700-like [Vitis vinifera]

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 327/584 (55%), Positives = 394/584 (67%), Gaps = 26/584 (4%)

Query: 1   MGPRICMNPKC---RTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGW 57
           M  + C N  C    + +T EW+KGW LRSG  A LC  CGSA+E  +FC+ FH ++ GW
Sbjct: 1   MASKTCANVSCPGASSGSTIEWRKGWALRSGDFAILCDKCGSAFEQLVFCDMFHSKDSGW 60

Query: 58  RECNFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFGALTKKDS 117
           R+C  C KRLHCGC AS S LELLD GGV C +C  S   H +  DE  N  GA+T  + 
Sbjct: 61  RKCTACGKRLHCGCIASRSLLELLDSGGVNCINCIRSSGPHPMTGDEKANESGAMTVDNV 120

Query: 118 DDTQTPMLENRVVGDGTAEGKLTQLCRIMEANE-PSFLAPFQRGDTIV--SLGQEKREEL 174
            + +   ++N++ G    + KLTQL      +   +FL   Q G+  +  SLGQ K+EE+
Sbjct: 121 GEIRCTSVDNQLDGGSVEKMKLTQLGNDTSGDGLKNFL---QSGNDNINGSLGQMKQEEV 177

Query: 175 RLPFVEVG-TGFSSPTKLSSRSSKFTKPDGSRSMLDVRDMPESLAQRSSSMSLGVPAGCS 233
             P  E G T  S+  + S  SS   K D  ++ + V+D+ ESL Q + S++LG P+G  
Sbjct: 178 LPPQGETGSTCLSNLNQASIGSSIHAKLDICKANMMVKDIHESLVQTNLSITLGAPSGNP 237

Query: 234 NFVPPFSNGAADGREPCKAHPSFQQGQRSRPILPKPSKTGLTISSETKKSTASQLRIARP 293
           N  P   +   + RE  K     QQG RSR +LPKP ++ L+   ET      Q+R+ARP
Sbjct: 238 NVFP---SAVVEEREQHKTSTPIQQGPRSRHLLPKPPRSALSPVLETNTGIVPQIRVARP 294

Query: 294 PAEGRGKNHLLPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACA 353
           PAEGRG+N LLPRYWPRITDQELQQ+SGD NSTIVPLFEK+LSASDAGRIGRLVLPKACA
Sbjct: 295 PAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACA 354

Query: 354 EAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTS 413
           EAYFP ISQ EG+PLR+QDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQL+AGDT 
Sbjct: 355 EAYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT- 413

Query: 414 MIHSILTRDDKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNGC-PGESFLSGVTE 472
                      +TFSR+DP GKLVMGFRKA     MQD Q SAI NG    E+F SGV E
Sbjct: 414 -----------VTFSRMDPEGKLVMGFRKASNSVSMQDTQLSAIPNGAHSSETFFSGVIE 462

Query: 473 NLPTVSGYSGHFQMLKGSKDPHIDALSEHLSLAEGGNGWHKSENHGQKTNEDSPQKSLLG 532
           N P +SGYSG  Q LKGS DPH++ALS+HL+ A G  GWHK+E HG KT E     S+L 
Sbjct: 463 NQPIISGYSGILQSLKGSTDPHLNALSKHLNSASGDIGWHKTEKHGGKTREGLLLPSMLV 522

Query: 533 MEKKRTRNIGSKSKRLLMHSEEAMELRLTWEEAQDLLRPSPSAR 576
            EKKRTR IGSKSKRLL+  ++A+ELRLTWEEAQ LLRP PS +
Sbjct: 523 PEKKRTRTIGSKSKRLLIDGQDALELRLTWEEAQSLLRPPPSVK 566

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140599|ref|XP_002323669.1| predicted protein [Populus trichocarpa] gi|222868299|gb|EEF05430.1| predicted protein [Populus trichocarpa]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 322/575 (56%), Positives = 385/575 (66%), Gaps = 26/575 (4%)

Query: 6   CMNPKC--RTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWRECNFC 63
           CMN  C   T+++  W+KGW LRSG  A LC +CGSAYE  +FC  FH ++ GWREC  C
Sbjct: 9   CMNATCGVSTSSSGGWRKGWALRSGDFAILCDNCGSAYEQSVFCEVFHSKDSGWRECTSC 68

Query: 64  SKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFGALTKKDSDDTQTP 123
            KRLHCGC AS S LELLD GGV C SC+ S  +  +  DE  NGFG     D+ + Q+ 
Sbjct: 69  GKRLHCGCIASKSLLELLDGGGVNCTSCSKSAGVSSVNGDEKTNGFGMSKVDDAGELQSA 128

Query: 124 MLENRVVGDGTAEGKLTQLCRIMEANEPSFLAPFQRGDTIVSLGQEKREELRLPFVEVG- 182
             +N++    T E KL QL   ++      L   Q  +T  S  + K+E++  P  E+  
Sbjct: 129 SADNQL----TTETKLMQLGNCIDRIATRNLLQLQSSETDGSYRKMKQEDIIPPVGEIAS 184

Query: 183 TGFSSPTKLSSRSSKFTKPDGSRSMLDVRDMPESLAQRSSSMSLGVPAGCSNFVPPFSNG 242
           T F +   +S+ SS+  KP+  ++    +D+ ESLAQ + S+SLG   G  N   PF  G
Sbjct: 185 TSFLNFNHISNASSQTAKPEIHKTTA-AKDLYESLAQTNLSISLGSSLGNPN---PFPGG 240

Query: 243 AADGREPCKAHPSFQQGQRSRPILPKPSKTGLTISSETKKSTASQLRIARPPAEGRGKNH 302
             D R   KA    QQG RSR +LPKP K  L +  +      SQ+R+ARPPAEGRG+N 
Sbjct: 241 VVDERVLAKASSPLQQGPRSRHLLPKPPKPALVL--DANAGMVSQIRVARPPAEGRGRNQ 298

Query: 303 LLPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQ 362
           LLPRYWPRITDQELQQ+SGD NSTIVPLFEK+LSASDAGRIGRLVLPKACAEAYFP ISQ
Sbjct: 299 LLPRYWPRITDQELQQISGDPNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQ 358

Query: 363 SEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRD 422
            EG+PLR+QDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSM+L+AGDT          
Sbjct: 359 PEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMKLQAGDT---------- 408

Query: 423 DKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNGCP-GESFLSGVTENLPTVSGYS 481
             +TFSR+DP GKLVMGFRKA     MQD Q SAI NG P  ES+ SGV ENLP +SGYS
Sbjct: 409 --VTFSRMDPEGKLVMGFRKASNSIAMQDTQPSAIPNGVPSSESYFSGVFENLPIISGYS 466

Query: 482 GHFQMLKGSKDPHIDALSEHLSLAEGGNGWHKSENHGQKTNEDSPQKSLLGMEKKRTRNI 541
           G    LKGS D H+ ALS+HL  A G   WHKSE    +T +     SLL  E+KR RNI
Sbjct: 467 GLLHSLKGSTDTHLSALSKHLHSASGDISWHKSEKQEARTRDGLLLPSLLAPERKRLRNI 526

Query: 542 GSKSKRLLMHSEEAMELRLTWEEAQDLLRPSPSAR 576
           GSKSKRLL+ S +A+EL++TWEEAQDLLRP PS +
Sbjct: 527 GSKSKRLLIDSLDALELKVTWEEAQDLLRPEPSIK 561

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735542|emb|CBI18036.3| unnamed protein product [Vitis vinifera]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 321/583 (55%), Positives = 385/583 (66%), Gaps = 49/583 (8%)

Query: 1   MGPRICMNPKC---RTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGW 57
           M  + C N  C    + +T EW+KGW LRSG  A LC  CGSA+E  +FC+ FH ++ GW
Sbjct: 1   MASKTCANVSCPGASSGSTIEWRKGWALRSGDFAILCDKCGSAFEQLVFCDMFHSKDSGW 60

Query: 58  RECNFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFGALTKKDS 117
           R+C  C KRLHCGC AS S LELLD GGV C +C  S   H +  DE  N  GA+T  + 
Sbjct: 61  RKCTACGKRLHCGCIASRSLLELLDSGGVNCINCIRSSGPHPMTGDEKANESGAMTVDNV 120

Query: 118 DDTQTPMLENRVVGDGTAEGKLTQLCRIMEANE-PSFLAPFQRGDTIV--SLGQEKREEL 174
            + +   ++N++ G    + KLTQL      +   +FL   Q G+  +  SLGQ K+EE+
Sbjct: 121 GEIRCTSVDNQLDGGSVEKMKLTQLGNDTSGDGLKNFL---QSGNDNINGSLGQMKQEEV 177

Query: 175 RLPFVEVGTGFSSPTKLSSRSSKFTKPDGSRSMLDVRDMPESLAQRSSSMSLGVPAGCSN 234
            LP                       P G  + + V+D+ ESL Q + S++LG P+G  N
Sbjct: 178 -LP-----------------------PQGETANMMVKDIHESLVQTNLSITLGAPSGNPN 213

Query: 235 FVPPFSNGAADGREPCKAHPSFQQGQRSRPILPKPSKTGLTISSETKKSTASQLRIARPP 294
             P   +   + RE  K     QQG RSR +LPKP ++ L+   ET      Q+R+ARPP
Sbjct: 214 VFP---SAVVEEREQHKTSTPIQQGPRSRHLLPKPPRSALSPVLETNTGIVPQIRVARPP 270

Query: 295 AEGRGKNHLLPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAE 354
           AEGRG+N LLPRYWPRITDQELQQ+SGD NSTIVPLFEK+LSASDAGRIGRLVLPKACAE
Sbjct: 271 AEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAE 330

Query: 355 AYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSM 414
           AYFP ISQ EG+PLR+QDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQL+AGDT  
Sbjct: 331 AYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT-- 388

Query: 415 IHSILTRDDKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNGC-PGESFLSGVTEN 473
                     +TFSR+DP GKLVMGFRKA     MQD Q SAI NG    E+F SGV EN
Sbjct: 389 ----------VTFSRMDPEGKLVMGFRKASNSVSMQDTQLSAIPNGAHSSETFFSGVIEN 438

Query: 474 LPTVSGYSGHFQMLKGSKDPHIDALSEHLSLAEGGNGWHKSENHGQKTNEDSPQKSLLGM 533
            P +SGYSG  Q LKGS DPH++ALS+HL+ A G  GWHK+E HG KT E     S+L  
Sbjct: 439 QPIISGYSGILQSLKGSTDPHLNALSKHLNSASGDIGWHKTEKHGGKTREGLLLPSMLVP 498

Query: 534 EKKRTRNIGSKSKRLLMHSEEAMELRLTWEEAQDLLRPSPSAR 576
           EKKRTR IGSKSKRLL+  ++A+ELRLTWEEAQ LLRP PS +
Sbjct: 499 EKKRTRTIGSKSKRLLIDGQDALELRLTWEEAQSLLRPPPSVK 541

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745757|emb|CBI15813.3| unnamed protein product [Vitis vinifera]

 Score =  576 bits (1484), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 316/576 (54%), Positives = 367/576 (63%), Gaps = 87/576 (15%)

Query: 1   MGPRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWREC 60
           MG RIC N  C T  + EWKKGW ++SG   DLCY CGSAYEN +FC TFH EE GWR+C
Sbjct: 1   MGSRICKNKWCGTTASFEWKKGWTIKSGAVVDLCYKCGSAYENLVFCETFHQEEDGWRQC 60

Query: 61  NFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFGALTKKDSDDT 120
           + C KR+HCGC  SN   E LDYGGV C SC  SP+ H ++ D                 
Sbjct: 61  SLCHKRIHCGCIVSNYQFEALDYGGVRCSSCLKSPQCHPVRSD----------------- 103

Query: 121 QTPMLENRVVGDGTAEGKLTQLCRIMEANEPSFLAPFQRGDTIVSLGQEKREELRLPFVE 180
                               QL + MEA+E + L   Q+GD  VSLGQ K+++      E
Sbjct: 104 -----------------NFMQLGKTMEADELNHLLQSQKGDANVSLGQIKQDDSMHAVRE 146

Query: 181 VGTGFSSPTKLSSRSSKFTKPDGSRSMLDVRDMPESLAQRSSSMSLGVPAGCSNFVPPFS 240
           V T F + +  S   S+F K D S  ML  +D+ ESL Q S ++SL   +G  NF+ PF 
Sbjct: 147 VNTIFPTTSLPSIGPSEFAKSDNSIPMLMGKDVYESLVQPSLNISLSSSSGPPNFLLPFP 206

Query: 241 NGAADGREPCKAHPSFQQGQRSRPILPKPSKTGLTISSETKKSTASQLRIARPPAEGRGK 300
             A +G E  K+  +FQQGQR+R ILPKP  + L+I SE  KS   ++RIARPPAEGRG+
Sbjct: 207 GNAVEGMEHSKSAFTFQQGQRTRHILPKPPNSSLSIGSEANKSMVPEIRIARPPAEGRGR 266

Query: 301 NHLLPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHI 360
           N LLPRYWPRITDQELQQLSGDLNSTIVPLFEK+LSASDAGRIGRLVLPKACAEAYFP I
Sbjct: 267 NQLLPRYWPRITDQELQQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPI 326

Query: 361 SQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILT 420
           SQSEG+PLRVQD KG EW FQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDT        
Sbjct: 327 SQSEGLPLRVQDAKGTEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDT-------- 378

Query: 421 RDDKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNG-CPGESFLSGVTENLPTVSG 479
               + FSRIDPG KLV+G RKA    D+QDAQTSA++NG   G S  S VTENL T +G
Sbjct: 379 ----VIFSRIDPGNKLVIGCRKASNCVDVQDAQTSALSNGTIYGGSSFSSVTENLSTCAG 434

Query: 480 YSGHFQMLKGSKDPHIDALSEHLSLAEGGNGWHKSENHGQKTNEDSPQKSLLGMEKKRTR 539
                                                   K NEDSPQ+SLL  EKKRTR
Sbjct: 435 ----------------------------------------KMNEDSPQQSLLIPEKKRTR 454

Query: 540 NIGSKSKRLLMHSEEAMELRLTWEEAQDLLRPSPSA 575
           NIGSK+KRLLMHSE+A+EL++TW+E QD+LRP PS 
Sbjct: 455 NIGSKNKRLLMHSEDALELKITWQETQDILRPPPSV 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091110|ref|XP_002309182.1| predicted protein [Populus trichocarpa] gi|222855158|gb|EEE92705.1| predicted protein [Populus trichocarpa]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 319/575 (55%), Positives = 368/575 (64%), Gaps = 66/575 (11%)

Query: 6   CMNPKC--RTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWRECNFC 63
           CMN  C   T+N+  W+KGW LRSG  A LC +CGSAYE  IFC  FH ++ GWREC  C
Sbjct: 3   CMNATCGVSTSNSGGWRKGWALRSGDFAILCDNCGSAYEQSIFCEVFHSKDSGWRECTSC 62

Query: 64  SKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRLHLIQRDEIPNGFGALTKKDSDDTQTP 123
           SKRLHCGC AS S LELLD GGV C SC+ +  +  +  DE PNGFG    K   DT   
Sbjct: 63  SKRLHCGCIASRSLLELLDGGGVNCTSCSRTSGVGPMNGDEKPNGFG----KPKVDTVGE 118

Query: 124 MLENRVVGDGTAEGKLTQLCRIMEANEPSFLAPFQRGDTIVSLGQEKREELRLPFVEVGT 183
           +          AE KL QL                 G+ I  +G   R  L+L   E   
Sbjct: 119 LHSASADSQLAAETKLMQL-----------------GNCIDGIG--TRNLLQLQSDETNG 159

Query: 184 GFSSPTKLSSRSSKFTKPDGSRSMLDVRDMPESLAQRSSSMSLGVPAGCSNFVPPFSNGA 243
             ++                       +D+ ESLAQ + SMSLG   G  N  P    G 
Sbjct: 160 TVTA----------------------AKDLYESLAQTNLSMSLGSSLGNPNLFP---GGV 194

Query: 244 ADGREPCKAHPSFQQGQRSRPILPKPSKTGLTISSETKKSTASQLRIARPPAEGRGKNHL 303
            D R P KA    QQG RSR +LPKP K+ L++  +      SQ+R+ARPPAEGRG+N L
Sbjct: 195 VDERVPSKASSPLQQGPRSRHLLPKPPKSALSM--DANAGMVSQIRVARPPAEGRGRNQL 252

Query: 304 LPRYWPRITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQS 363
           LPRYWPRITDQELQQ+SGD NSTIVPLFEK+LSASDAGRIGRLVLPKACAEAYFP ISQ 
Sbjct: 253 LPRYWPRITDQELQQISGDPNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQP 312

Query: 364 EGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDD 423
           EG+PLR+QDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSM+L+AGDT           
Sbjct: 313 EGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMKLQAGDT----------- 361

Query: 424 KITFSRIDPGGKLVMGFRKAPIPGDM-QDAQTSAITNGCP-GESFLSGVTENLPTVSGYS 481
            +TFSR+DP GKLVMGFRKA     M QD Q SAI NG P  ES+ SGV ENLP +SGYS
Sbjct: 362 -VTFSRMDPEGKLVMGFRKASNSIAMQQDTQPSAIPNGVPSSESYFSGVFENLPIISGYS 420

Query: 482 GHFQMLKGSKDPHIDALSEHLSLAEGGNGWHKSENHGQKTNEDSPQKSLLGMEKKRTRNI 541
           G  Q LKGS D H+ ALS+HL  A G   W+KSE    +T +     SL+  E+KRTRNI
Sbjct: 421 GLLQSLKGSTDTHLSALSKHLHSASGDISWNKSEKQEDRTRDGLLLPSLMVPERKRTRNI 480

Query: 542 GSKSKRLLMHSEEAMELRLTWEEAQDLLRPSPSAR 576
           GSKSKRLL+ S +A EL+LTWEEAQDLLRP+PS +
Sbjct: 481 GSKSKRLLIDSLDAFELKLTWEEAQDLLRPAPSVK 515

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	582
TAIR|locus:2064417	790	HSI2 "high-level expression of	0.453	0.334	0.551	2.4e-130
TAIR|locus:2116592	780	HSL1 "HSI2-like 1" [Arabidopsi	0.384	0.287	0.592	1.3e-117
TAIR|locus:2088439	313	FUS3 "FUSCA 3" [Arabidopsis th	0.171	0.319	0.405	6e-16
UNIPROTKB|P37398	727	VP1 "B3 domain-containing prot	0.180	0.144	0.394	2e-13
UNIPROTKB|Q7XKC5	433	LOC_Os04g58000 "B3 domain-cont	0.149	0.200	0.465	2.4e-13
TAIR|locus:2032170	363	LEC2 "LEAFY COTYLEDON 2" [Arab	0.182	0.292	0.4	4.1e-12
TAIR|locus:2093166	720	ABI3 "AT3G24650" [Arabidopsis	0.151	0.122	0.404	4.7e-12
UNIPROTKB|A4LBC0	402	LFL1 "B3 domain-containing pro	0.185	0.268	0.368	5.7e-12
TAIR|locus:2039165	244	ABS2 "ABNORMAL SHOOT 2" [Arabi	0.326	0.778	0.273	2.2e-11
UNIPROTKB|Q6Z1Z3	362	IDEF1 "B3 domain-containing pr	0.154	0.248	0.406	4.3e-11

TAIR|locus:2064417 HSI2 "high-level expression of sugar-inducible gene 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 2.4e-130, Sum P(3) = 2.4e-130
 Identities = 160/290 (55%), Positives = 195/290 (67%)

Query:   197 KFTKPDGSRS--MLDVR-DMPESLA-QRSSSMSLGVPAGCSNFVPPFSNGAADGREPCKA 252
             K   P+ + +   LD   +M ES   Q S +M L V    + F P F+  A +G +    
Sbjct:   163 KLMSPESTTTGHRLDAAGEMHESSPLQPSLNMGLAV----NPFSPSFATEAVEGMKHISP 218

Query:   253 HPSFQQGQRSRPILPKPSKTGLTISSETKKSTASQLRIARPPAEGRGKNHLLPRYWPRIT 312
               S      +  IL KPS+    IS+    S ++Q RI RPP EGRG+ HLLPRYWP+ T
Sbjct:   219 SQSNMVHCSASNILQKPSRPA--ISTPPVASKSAQARIGRPPVEGRGRGHLLPRYWPKYT 276

Query:   313 DQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQD 372
             D+E+QQ+SG+LN  IVPLFEK LSASDAGRIGRLVLPKACAEAYFP ISQSEG+PL++QD
Sbjct:   277 DKEVQQISGNLNLNIVPLFEKTLSASDAGRIGRLVLPKACAEAYFPPISQSEGIPLKIQD 336

Query:   373 VKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRIDP 432
             V+G+EW FQFR+WPNNNSRMYVLEGVTPCIQSM L+AGDT            +TFSR+DP
Sbjct:   337 VRGREWTFQFRYWPNNNSRMYVLEGVTPCIQSMMLQAGDT------------VTFSRVDP 384

Query:   433 GGKLVMGFRKAPIPGDMQDAQTSAITNGCPGE-SFLSGVTENLPTVSGYS 481
             GGKL+MG RKA   GDMQ      +TNG   E +  SGVTEN P+++G S
Sbjct:   385 GGKLIMGSRKAANAGDMQGC---GLTNGTSTEDTSSSGVTENPPSINGSS 431

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=TAS

GO:0009744 "response to sucrose stimulus" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0010030 "positive regulation of seed germination" evidence=IGI

GO:2000034 "regulation of seed maturation" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2116592 HSL1 "HSI2-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 1.3e-117, Sum P(3) = 1.3e-117
 Identities = 144/243 (59%), Positives = 167/243 (68%)

Query:   206 SMLDVRDMPESLAQRSSSMSLGVPAGCSNFVPPFSNGAADGREPCKAHPSFQQGQRSRPI 265
             S LD         + S+  +L +  G +    PF + A D R   K +  FQ   RSR +
Sbjct:   158 SSLDALRHKTERKELSAQPNLSISLGPTLMTSPFHDAAVDDRS--KTNSIFQLAPRSRQL 215

Query:   266 LPKPSKTG-LTISSETKKSTASQLRIARPPAEGRGKNHLLPRYWPRITDQELQQLSGDL- 323
             LPKP+ +  +    E   S  SQ+ +ARPP EGRGK  LLPRYWPRITDQEL QLSG   
Sbjct:   216 LPKPANSAPIAAGMEPSGSLVSQIHVARPPPEGRGKTQLLPRYWPRITDQELLQLSGQYP 275

Query:   324 ---NSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVF 380
                NS I+PLFEK+LSASDAGRIGRLVLPKACAEAYFP IS  EG+PL++QD+KGKEWVF
Sbjct:   276 HLSNSKIIPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISLPEGLPLKIQDIKGKEWVF 335

Query:   381 QFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRIDPGGKLVMGF 440
             QFRFWPNNNSRMYVLEGVTPCIQSMQL+AGDT            +TFSR +P GKLVMG+
Sbjct:   336 QFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDT------------VTFSRTEPEGKLVMGY 383

Query:   441 RKA 443
             RKA
Sbjct:   384 RKA 386

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010030 "positive regulation of seed germination" evidence=IGI

GO:2000034 "regulation of seed maturation" evidence=IGI

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009790 "embryo development" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048316 "seed development" evidence=RCA

GO:0048366 "leaf development" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0051301 "cell division" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2088439 FUS3 "FUSCA 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 41/101 (40%), Positives = 64/101 (63%)

Query:   330 LFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKE-WVFQFRFWPNN 388
             LF+K L  SD   + R++LPK  AEA+ P +   EG+P+R++D+ G   W F++R+WPNN
Sbjct:    91 LFQKELKNSDVSSLRRMILPKKAAEAHLPALECKEGIPIRMEDLDGFHVWTFKYRYWPNN 150

Query:   389 NSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSR 429
             NSRMYVLE     + +  L+ GD  M++  L  ++ +  +R
Sbjct:   151 NSRMYVLENTGDFVNAHGLQLGDFIMVYQDLYSNNYVIQAR 191

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI;IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010116 "positive regulation of abscisic acid biosynthetic process" evidence=IMP

GO:0010373 "negative regulation of gibberellin biosynthetic process" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

UNIPROTKB|P37398 VP1 "B3 domain-containing protein VP1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 205 (77.2 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
 Identities = 43/109 (39%), Positives = 65/109 (59%)

Query:   310 RITDQELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLR 369
             R T  E +Q   D N     L +K+L  SD G +GR+VLPK  AE + P +   +GV + 
Sbjct:   518 RSTASEKRQAKTDKNLRF--LLQKVLKQSDVGSLGRIVLPKE-AEVHLPELKTRDGVSIP 574

Query:   370 VQDVKGKE-WVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHS 417
             ++D+   + W  ++RFWPNN SRMY+LE     ++S +L+ GD  +I+S
Sbjct:   575 MEDIGTSQVWNMRYRFWPNNKSRMYLLENTGDFVRSNELQEGDFIVIYS 623

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009790 "embryo development" evidence=IEP

UNIPROTKB|Q7XKC5 LOC_Os04g58000 "B3 domain-containing protein Os04g0676600" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 204 (76.9 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 41/88 (46%), Positives = 57/88 (64%)

Query:   330 LFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKE-WVFQFRFWPNN 388
             +  K L+ SD G IGR+V+PK  AEA+ P + Q EGV L++ D K +  W F++RFWPNN
Sbjct:   296 ILRKELTNSDVGNIGRIVMPKRDAEAHLPALHQREGVMLKMDDFKLETTWNFKYRFWPNN 355

Query:   389 NSRMYVLEGVTPCIQSMQLRAGDTSMIH 416
              SRMYVLE     ++   L+ GD  +I+
Sbjct:   356 KSRMYVLESTGGFVKQHVLQTGDIFIIY 383

GO:0003677 "DNA binding" evidence=IDA

TAIR|locus:2032170 LEC2 "LEAFY COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 44/110 (40%), Positives = 65/110 (59%)

Query:   310 RITDQE--LQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVP 367
             +I+D++   QQ + D N  +  L EK L  SD G +GR+VLPK  AEA  P +S  EG+ 
Sbjct:   149 QISDKKDSYQQSTFD-NKKLRVLCEKELKNSDVGSLGRIVLPKRDAEANLPKLSDKEGIV 207

Query:   368 LRVQDVKGKE-WVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIH 416
             ++++DV   + W F+++FW NN SRMYVLE     ++      GD   I+
Sbjct:   208 VQMRDVFSMQSWSFKYKFWSNNKSRMYVLENTGEFVKQNGAEIGDFLTIY 257

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010344 "seed oilbody biogenesis" evidence=IMP

GO:0010431 "seed maturation" evidence=IMP

GO:0010601 "positive regulation of auxin biosynthetic process" evidence=IMP

TAIR|locus:2093166 ABI3 "AT3G24650" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
 Identities = 36/89 (40%), Positives = 57/89 (64%)

Query:   330 LFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDV-KGKEWVFQFRFWPNN 388
             L +K+L  SD G +GR+VLPK  AE + P +   +G+ L ++D+   + W  ++RFWPNN
Sbjct:   571 LLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISLAMEDIGTSRVWNMRYRFWPNN 630

Query:   389 NSRMYVLEGVTPCIQSMQLRAGDTSMIHS 417
              SRMY+LE     +++  L+ GD  +I+S
Sbjct:   631 KSRMYLLENTGDFVKTNGLQEGDFIVIYS 659

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS;IDA

GO:0009657 "plastid organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009790 "embryo development" evidence=IEP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IDA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0051301 "cell division" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

UNIPROTKB|A4LBC0 LFL1 "B3 domain-containing protein LFL1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 191 (72.3 bits), Expect = 5.7e-12, P = 5.7e-12
 Identities = 46/125 (36%), Positives = 73/125 (58%)

Query:   330 LFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVP-LRVQDVKGKE-WVFQFRFWPN 387
             + +K L  SD  ++GR+VLPK  AEAY P ++  +G   L + D++  + W F++R+WPN
Sbjct:   180 ILQKELRYSDVSQLGRIVLPKKEAEAYLPILTSKDGKKSLCMHDLQNAQLWTFKYRYWPN 239

Query:   388 NNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRIDPGGKLVMGFRKAPIPG 447
             N SRMYVLE     +++  L+ GD+ +I+    +DD+          + V+G +KA   G
Sbjct:   240 NKSRMYVLENTGDYVRTHDLQLGDSIVIY----KDDE--------NNRFVIGAKKA---G 284

Query:   448 DMQDA 452
             D Q A
Sbjct:   285 DQQAA 289

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0048573 "photoperiodism, flowering" evidence=IMP

TAIR|locus:2039165 ABS2 "ABNORMAL SHOOT 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 58/212 (27%), Positives = 100/212 (47%)

Query:   314 QELQQLSGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQS-----EGVPL 368
             Q+ QQ   D+      LFEK L+ SD G++ RLV+PK  AE YFP  + +     +G+ L
Sbjct:    21 QQQQQHQNDVVEEKEALFEKPLTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEKGLLL 80

Query:   369 RVQDVKGKEWVFQFRFWPNNNSRMYVL-EGVTPCIQSMQLRAGDTSMIHSILTRDDKITF 427
               +D +GK W F++ +W  N+S+ YVL +G +  ++   L AGD  + H    R D    
Sbjct:    81 CFEDEEGKPWRFRYSYW--NSSQSYVLTKGWSRYVKEKHLDAGDVVLFHR--HRSD---- 132

Query:   428 SRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNGCPGESFLSGVTENLPTVSGYSGHFQML 487
                  GG+  +G+R+        D+     +N    + +     + + +  G S   ++ 
Sbjct:   133 -----GGRFFIGWRRRGDSSSSSDSYRHVQSNASL-QYYPHAGAQAVESQRGNSKTLRLF 186

Query:   488 KGSKDPHIDALSEHLSLAEGGNGWHKSENHGQ 519
               + +  +D+     S  +G N +  + NH Q
Sbjct:   187 GVNMECQLDSDWSEPSTPDGSNTY--TTNHDQ 216

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009062 "fatty acid catabolic process" evidence=RCA

UNIPROTKB|Q6Z1Z3 IDEF1 "B3 domain-containing protein IDEF1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 182 (69.1 bits), Expect = 4.3e-11, P = 4.3e-11
 Identities = 37/91 (40%), Positives = 56/91 (61%)

Query:   330 LFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQD-VKGKEWVFQFRFWPNN 388
             +  K L+ SD G +GR+VLPK  AEA  P + Q + + L + D V    W F++R+WPNN
Sbjct:   252 ILRKELTKSDVGNVGRIVLPKKDAEASLPPLLQRDPLILHMDDMVLPVTWKFKYRYWPNN 311

Query:   389 NSRMYVLEGVTPCIQSMQLRAGDTSMIHSIL 419
              SRMY+L+     +++  L+AGD  +I+  L
Sbjct:   312 KSRMYILDSAGEFLKTHGLQAGDVIIIYKNL 342

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIII.273.1 annotation not avaliable (831 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	582
cd10017	98	cd10017, B3_DNA, Plant-specific B3-DNA binding dom	3e-19
pfam02362	97	pfam02362, B3, B3 DNA binding domain	2e-17
smart01019	96	smart01019, B3, B3 DNA binding domain	1e-14
cd10015	109	cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o	7e-07

>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain

 Score = 82.4 bits (204), Expect = 3e-19
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 329 PLFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNN 388
           PLF K+L+ SD   +GRLVLPK  A+A+ P     EGV + ++D  GK+W  + +   N+
Sbjct: 1   PLFFKVLTPSDVSSLGRLVLPKKFAKAHLPP---KEGVEVTLEDPDGKKWTVKLKKRKNS 57

Query: 389 NSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRIDPGGKLVMGFRK 442
             RM +  G    +++  L+ GD             + F       K  +   +
Sbjct: 58  G-RMVLSGGWKEFVRANGLKEGDF------------LVFELDGRNSKFKVRIFR 98

The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families, as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development, while other members of the LAV family seem to have a more general role, being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain, they activate or repress transcription. RAV and REM families are less studied B3 protein famillies. Length = 98

>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain

 Score = 77.0 bits (190), Expect = 2e-17
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 19/114 (16%)

Query: 331 FEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNS 390
           F K+L+ SD  + GRLVLPK  AE    +    +G  + + D  GK W  + R+    + 
Sbjct: 1   FVKVLTPSDVSKDGRLVLPKKFAEENGLN---KKGQEITLLDPDGKSWTVKLRYR--KSG 55

Query: 391 RMYVLE-GVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRIDPGGKLVMGFRKA 443
           R Y+L  G    +++  L+AGD+            + F   D GGK V+G  + 
Sbjct: 56  RRYLLTSGWKEFVKANGLKAGDS------------LVFKL-DGGGKFVVGIFRK 96

This is a family of plant transcription factors with various roles in development, the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by. Length = 97

>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain

 Score = 69.2 bits (170), Expect = 1e-14
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 18/113 (15%)

Query: 331 FEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNS 390
           F K L+ SD  + GRLVLPK  AE+  P +   E   + + D  GK W  + ++    +S
Sbjct: 1   FFKTLTTSDVSKHGRLVLPKQFAESNGPPLKPKE---ITLLDPDGKSWKVKLKYR--GSS 55

Query: 391 RMYVLEGVTPCI-QSMQLRAGDTSMIHSILTRDDKITFSRIDPGGKLVMGFRK 442
            M++L G      ++  L+AGD+            +TF     G  +V  FRK
Sbjct: 56  GMFLLTGGWKEFVKANGLKAGDS------------LTFELDGNGEFVVSIFRK 96

Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations. Length = 96

>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 9/102 (8%)

Query: 330 LFEKILSASDAGRIG----RLVLPKACAEAYFPHISQSE----GVPLRVQDV-KGKEWVF 380
           +  K LSA+D G  G     L +PK   E + P I+ +      + L + D+   ++W  
Sbjct: 2   VLIKRLSANDTGATGGHQVGLYIPKGIVEKFPPSINHTREANPSIFLTMHDISDCRDWEA 61

Query: 381 QFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRD 422
           +  F+ +N +   +  G    ++   L  GD ++I   L ++
Sbjct: 62  RAIFYNSNRNEKRLTRGGRGFVKQNPLNTGDLTLIAFDLDKE 103

This family contains the N-terminal DNA binding domain of type IIE restriction endonuclease EcoRII-like proteins, the C-terminal DNA binding domain of type IIS restriction endonuclease BfiI-like proteins and plant-specific B3 proteins. Type II restriction endonucleases are components of restriction modification (RM) systems that protect bacteria and archaea against invading foreign DNA. They usually function as homodimers or homotetramers that cleave DNA at defined sites of 4 to 8 bp in length, and they require Mg2+, not ATP or GTP, for catalysis. EcoRII is specific for the 5'-CCWGG sequence (W stands for A or T). EcoRII consists of 2 domains, the C-terminal catalytic/dimerization domain (EcoRII-C), and the N-terminal effector DNA binding domain (EcoRII-N). BfiI is unique in cleaving DNA at fixed positions downstream of an asymmetric sequence in the absence of Mg2+. BfiI consists of two discrete domains with distinct functions: an N-terminal catalytic domain with non-specific nuclease activity and dimerization function that is more closely related to Nuc, an EDTA-resistant nuclease from the phospholipase D (PLD) superfamily; and a C-terminal domain that specifically recognizes its target sequences, 5'-ACTGGG-3'. B3 proteins are a family of plant-specific transcription factors, involved in a great variety of processes, including seed development and auxin response. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	582
PF02362	100	B3: B3 DNA binding domain; InterPro: IPR003340 Two	99.63
PF03754	114	DUF313: Domain of unknown function (DUF313) ; Inte	97.97
PF09217	156	EcoRII-N: Restriction endonuclease EcoRII, N-termi	97.84
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	91.34
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	90.65
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	89.42
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	88.56

>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species

Probab=99.63  E-value=1.9e-15  Score=127.51  Aligned_cols=98  Identities=24%  Similarity=0.432  Sum_probs=69.9

Q ss_pred             EEEeccccCCCCCCceEeehhhhhhcCCCCCCCCCceEEEEECCCCeEEEEEEEcCCCCCcceEe-cCchhhhhccCCcc
Q 039386          331 FEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVL-EGVTPCIQSMQLRA  409 (582)
Q Consensus       331 F~KvLT~SDVg~~gRLVIPK~~AEa~FP~Ld~~eGv~L~v~D~~Gk~W~FRf~yw~Nn~SR~YvL-tGWs~FVrsK~LqA  409 (582)
                      |.|+|+++|+....+|+||++.|+.|  .+....+..|.+.|..|++|.+++.++. ++.+ |+| .||..||++++|++
T Consensus         1 F~K~l~~s~~~~~~~l~iP~~f~~~~--~~~~~~~~~v~l~~~~g~~W~v~~~~~~-~~~~-~~l~~GW~~Fv~~n~L~~   76 (100)
T PF02362_consen    1 FFKVLKPSDVSSSCRLIIPKEFAKKH--GGNKRKSREVTLKDPDGRSWPVKLKYRK-NSGR-YYLTGGWKKFVRDNGLKE   76 (100)
T ss_dssp             EEEE--TTCCCCTT-EEE-HHHHTTT--S--SS--CEEEEEETTTEEEEEEEEEEC-CTTE-EEEETTHHHHHHHCT--T
T ss_pred             CEEEEEccCcCCCCEEEeCHHHHHHh--CCCcCCCeEEEEEeCCCCEEEEEEEEEc-cCCe-EEECCCHHHHHHHcCCCC
Confidence            89999999999888999999999998  2222356899999999999999999883 3344 555 59999999999999


Q ss_pred             ccccccccccccCceEEEEeeC-CCCeEEEeEEeCC
Q 039386          410 GDTSMIHSILTRDDKITFSRID-PGGKLVMGFRKAP  444 (582)
Q Consensus       410 GD~i~iy~~~~~~~kVvFsR~~-~~GkL~IG~RRa~  444 (582)
                      ||.            ++|.... ...++.|.+.|++
T Consensus        77 GD~------------~~F~~~~~~~~~~~v~i~~~~  100 (100)
T PF02362_consen   77 GDV------------CVFELIGNSNFTLKVHIFRKS  100 (100)
T ss_dssp             T-E------------EEEEE-SSSCE-EEEEEE---
T ss_pred             CCE------------EEEEEecCCCceEEEEEEECc
Confidence            999            9999875 3456799988763

The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.

>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function

Probab=97.97  E-value=2.1e-05  Score=71.63  Aligned_cols=80  Identities=23%  Similarity=0.425  Sum_probs=63.6

Q ss_pred             CcccccEEEeccccCCCC-CCceEeehhhhhh--cCCC-----C-------CCCCCceEEEEECCCCeEEEEEEEcCC-C
Q 039386          325 STIVPLFEKILSASDAGR-IGRLVLPKACAEA--YFPH-----I-------SQSEGVPLRVQDVKGKEWVFQFRFWPN-N  388 (582)
Q Consensus       325 ~~~~~LF~KvLT~SDVg~-~gRLVIPK~~AEa--~FP~-----L-------d~~eGv~L~v~D~~Gk~W~FRf~yw~N-n  388 (582)
                      .....+|+|+|++|||.. .+||.||-.....  +|-+     |       ....|+.+.+.|..++.|..+++.|.- +
T Consensus        18 ~d~kli~~K~L~~tDv~~~qsRLsmP~~qi~~~dFLt~eE~~~i~~~~~~~~~~~Gv~V~lvdp~~~~~~m~lkkW~mg~   97 (114)
T PF03754_consen   18 EDPKLIIEKTLFKTDVDPHQSRLSMPFNQIIDNDFLTEEEKRIIKEEKKNNDKKKGVEVILVDPSLRKWTMRLKKWNMGN   97 (114)
T ss_pred             CCCeEEEeeeecccCCCCCCceeeccHHHhcccccCCHHHHHHHHHhhccCcccCCceEEEECCcCcEEEEEEEEecccC
Confidence            556789999999999994 7899999887633  2221     2       224689999999999999999999964 4


Q ss_pred             CCcceEec-Cchhhhhc
Q 039386          389 NSRMYVLE-GVTPCIQS  404 (582)
Q Consensus       389 ~SR~YvLt-GWs~FVrs  404 (582)
                      ..-.|+|. ||.+.|.+
T Consensus        98 ~~~~YvL~~gWn~VV~~  114 (114)
T PF03754_consen   98 GTSNYVLNSGWNKVVED  114 (114)
T ss_pred             CceEEEEEcChHhhccC
Confidence            56789996 99999863

>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV

Probab=97.84  E-value=4.9e-05  Score=72.62  Aligned_cols=85  Identities=21%  Similarity=0.339  Sum_probs=54.5

Q ss_pred             cccEEEeccccCCCCC----CceEeehhhhhhcCCCCCCCCC----ceEEEEECCC--CeEEEEEEEcCC----CCCcce
Q 039386          328 VPLFEKILSASDAGRI----GRLVLPKACAEAYFPHISQSEG----VPLRVQDVKG--KEWVFQFRFWPN----NNSRMY  393 (582)
Q Consensus       328 ~~LF~KvLT~SDVg~~----gRLVIPK~~AEa~FP~Ld~~eG----v~L~v~D~~G--k~W~FRf~yw~N----n~SR~Y  393 (582)
                      ...|.|.|++.|++.+    .++.|||..++..||.+....+    +.|.+.+..+  ..|+|||+|..|    ..+..|
T Consensus         7 ~~~~~K~LSaNDtGaTGgHQaGiyIpk~~~~~lFp~~~~~~~~Np~~~~~~~~~s~~~~~~~~r~iYYnn~~~~gTRNE~   86 (156)
T PF09217_consen    7 WAIYCKRLSANDTGATGGHQAGIYIPKSAAELLFPSINHTKEENPDIWLKARWQSHFVTDSQVRFIYYNNRLFGGTRNEY   86 (156)
T ss_dssp             EEEEEEE--CCCCTTTSSS--EEEE-HHHHHHH-GGG-SSSSSS-EEEEEEEETTTT---EEEEEEEE-CCCTTSS--EE
T ss_pred             eEEEEEEccCCCCCCcCcccceeEecccHHHHhCCCCCcccccCCceeEEEEECCCCccceeEEEEEEcccccCCCcCce
Confidence            4589999999999963    4899999999999998776443    6799999877  678899999943    247889


Q ss_pred             EecCchhhhhccC-Cccccc
Q 039386          394 VLEGVTPCIQSMQ-LRAGDT  412 (582)
Q Consensus       394 vLtGWs~FVrsK~-LqAGD~  412 (582)
                      -++.|+....--+ =.+||.
T Consensus        87 RIT~~G~~~~~~~~~~tGaL  106 (156)
T PF09217_consen   87 RITRFGRGFPLQNPENTGAL  106 (156)
T ss_dssp             EEE---TTSGGG-GGGTT-E
T ss_pred             EEeeecCCCccCCccccccE
Confidence            9999987665222 356777

All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the N-terminal effector-binding domain of the type II restriction endonuclease EcoRII, which has a DNA recognition fold, allowing for binding to 5'-CCWGG sequences. It assumes a structure composed of an eight-stranded beta-sheet with the strands in the order of b2, b5, b4, b3, b7, b6, b1 and b8. They are mostly antiparallel to each other except that b3 is parallel to b7. Alternatively, it may also be viewed as consisting of two mini beta-sheets of four antiparallel beta-strands, sheet I from beta-strands b2, b5, b4, b3 and sheet II from strands b7, b6, b1, b8, folded into an open mixed beta-barrel with a novel topology. Sheet I has a simple Greek key motif while sheet II does not []. The domain represented by this entry is only found in bacterial proteins.; PDB: 3HQF_A 1NA6_A.

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.34  E-value=0.069  Score=39.52  Aligned_cols=29  Identities=38%  Similarity=0.918  Sum_probs=20.6

Q ss_pred             CCCCCCCcccccCeeeccCCchhhchhhhhhcc
Q 039386           10 KCRTANTHEWKKGWLLRSGVCADLCYDCGSAYE   42 (582)
Q Consensus        10 ~C~~~~~~~wrkGW~lrsG~~a~LC~~CgsayE   42 (582)
                      .|+++.+..||+|.   .|... ||..||..|.
T Consensus         3 ~C~tt~t~~WR~~~---~g~~~-LCn~Cg~~~k   31 (36)
T PF00320_consen    3 NCGTTETPQWRRGP---NGNRT-LCNACGLYYK   31 (36)
T ss_dssp             TT--ST-SSEEEET---TSEE--EEHHHHHHHH
T ss_pred             CCcCCCCchhhcCC---CCCCH-HHHHHHHHHH
Confidence            59999999999998   44433 9999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=90.65  E-value=0.15  Score=41.14  Aligned_cols=33  Identities=33%  Similarity=0.728  Sum_probs=27.1

Q ss_pred             CCCCCCCCcccccCeeeccCCchhhchhhhhhccccc
Q 039386            9 PKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFI   45 (582)
Q Consensus         9 ~~C~~~~~~~wrkGW~lrsG~~a~LC~~CgsayE~~~   45 (582)
                      +.|+++.|..||+|.   .| -..||..||.-|-...
T Consensus         3 ~~C~~~~Tp~WR~g~---~~-~~~LCNaCgl~~~k~~   35 (54)
T cd00202           3 SNCGTTTTPLWRRGP---SG-GSTLCNACGLYWKKHG   35 (54)
T ss_pred             CCCCCCCCcccccCC---CC-cchHHHHHHHHHHhcC
Confidence            369999999999998   22 3589999999987665

>smart00249 PHD PHD zinc finger

Probab=89.42  E-value=0.23  Score=35.77  Aligned_cols=38  Identities=21%  Similarity=0.415  Sum_probs=25.8

Q ss_pred             CCCCcccccccCCccccccccccccceeecCCCcccccc
Q 039386           53 EEPGWRECNFCSKRLHCGCRASNSFLELLDYGGVGCRSC   91 (582)
Q Consensus        53 ~~sGWR~C~~C~KrlHcgCi~s~~~f~lLD~GGv~C~~C   91 (582)
                      ....|..|..|.++.|..|...... +......-.|..|
T Consensus        10 ~~~~~i~C~~C~~~~H~~C~~~~~~-~~~~~~~~~C~~C   47 (47)
T smart00249       10 DGGELLQCDGCDRWYHQTCLGPPLL-EEEPDGKWYCPKC   47 (47)
T ss_pred             CCCCEEECCCCCchhhhhhCCCccc-CCCCCCCEECcCC
Confidence            5677999999999999999876444 2233334444433

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=88.56  E-value=0.2  Score=39.96  Aligned_cols=35  Identities=34%  Similarity=0.750  Sum_probs=27.6

Q ss_pred             ccccCCCCCCCCCcccccCeeeccCCchhhchhhhhhcccc
Q 039386            4 RICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENF   44 (582)
Q Consensus         4 k~C~N~~C~~~~~~~wrkGW~lrsG~~a~LC~~CgsayE~~   44 (582)
                      +.|.  .|++..+..||+|..-.    ..||+.||.-|...
T Consensus         4 ~~C~--~C~~~~T~~WR~g~~g~----~~LCnaCgl~~~k~   38 (52)
T smart00401        4 RSCS--NCGTTETPLWRRGPSGN----KTLCNACGLYYKKH   38 (52)
T ss_pred             CCcC--CCCCCCCCccccCCCCC----CcEeecccHHHHHc
Confidence            4564  48999999999986433    69999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	582
1wid_A	130	Solution Structure Of The B3 Dna-Binding Domain Of		2e-11

>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 6/86 (6%)
Query: 330 LFEKILSASDAGRIGRLVLPKACAEAYFPHISQS---EGVPLRVQDVKGKEWVFQFRFWP 386
           LFEK ++ SD G++ RLV+PK  AE +FP  S +   +GV L  +DV GK W F++ +W 
Sbjct: 13  LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW- 71
Query: 387 NNNSRMYVL-EGVTPCIQSMQLRAGD 411
            N+S+ YVL +G +  ++   LRAGD
Sbjct: 72  -NSSQSYVLTKGWSRFVKEKNLRAGD 96
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	582
1wid_A	130	DNA-binding protein RAV1; DNA-binding domain, stru	2e-24
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130

 Score = 97.9 bits (243), Expect = 2e-24
 Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 23/146 (15%)

Query: 320 SGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQS---EGVPLRVQDVKGK 376
           SG    +   LFEK ++ SD G++ RLV+PK  AE +FP  S +   +GV L  +DV GK
Sbjct: 3   SGSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGK 62

Query: 377 EWVFQFRFWPNNNSRMYVL-EGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRID-PGG 434
            W F++ +W  N+S+ YVL +G +  ++   LRAGD             ++FSR +    
Sbjct: 63  VWRFRYSYW--NSSQSYVLTKGWSRFVKEKNLRAGDV------------VSFSRSNGQDQ 108

Query: 435 KLVMGFRKAPIPGDMQDAQTSAITNG 460
           +L +G++         D   S  ++G
Sbjct: 109 QLYIGWKSRS----GSDLDASGPSSG 130

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 77/511 (15%), Positives = 137/511 (26%), Gaps = 176/511 (34%)

Query: 145 IMEANEPSFLAPFQRGDTIVSLGQEKREELR--LPFVEVGTGFSSPTKLSSRSSKFTKPD 202
           I+   E +F+  F   D         ++  +  L   E+     S   +S          
Sbjct: 21  ILSVFEDAFVDNFDCKDV--------QDMPKSILSKEEIDHIIMSKDAVS---------- 62

Query: 203 GSRSMLDV-RDMPESLAQRSSSMSLGVPAGCSNFVPPF--SNGAADGREPCKAHPSFQQG 259
           G+  +        E + Q+     L       N+   F  S    + R+P      + + 
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLR-----INY--KFLMSPIKTEQRQPSMMTRMYIE- 114

Query: 260 QRSR-----PILPKPSKTGLTISSETK----KSTASQLRIARPPAE--------GRGKNH 302
           QR R      +  K       +S        +    +LR    PA+        G GK  
Sbjct: 115 QRDRLYNDNQVFAK-----YNVSRLQPYLKLRQALLELR----PAKNVLIDGVLGSGKTW 165

Query: 303 L-------------LPR--YW-----PRITDQELQQLSGDLNSTIVPLFEKILSASDAGR 342
           +             +    +W         +  L+ L   L   I P +    S SD   
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-KLLYQIDPNWT---SRSD--- 218

Query: 343 IGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGV--TP 400
                               S  + LR+  ++ +      +  P  N  + VL  V    
Sbjct: 219 -------------------HSSNIKLRIHSIQAELRRL-LKSKPYENC-LLVLLNVQNAK 257

Query: 401 CIQSMQLRAGDTSMIHSIL--TRDDKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAIT 458
              +  L          IL  TR  ++T         L                 T    
Sbjct: 258 AWNAFNLSC-------KILLTTRFKQVTDF-------LSAATTTHISLDHHSMTLT---- 299

Query: 459 NGCPGES------FLSGVTENLPTVSGYSGHFQMLKGSKDP-HIDALSEHLSLAEGGNGW 511
              P E       +L    ++LP         ++L  +  P  +  ++E  S+ +G   W
Sbjct: 300 ---PDEVKSLLLKYLDCRPQDLPR--------EVLTTN--PRRLSIIAE--SIRDGLATW 344

Query: 512 HKSENHGQKTNEDSPQKSLLGMEKKRTR-------------NIGSKSKRLL---MHSEEA 555
              ++          + SL  +E    R             +I +    L+   +   + 
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 556 MELRLTWEEAQDLLRPS-----PSARTKHCH 581
           M +         L + S     P   T    
Sbjct: 405 MVV------VNKLHKYSLVEKQPKESTISIP 429

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	582
1wid_A	130	DNA-binding protein RAV1; DNA-binding domain, stru	99.95
4i1k_A	146	B3 domain-containing transcription factor VRN1; B3	99.58
1yel_A	104	AT1G16640; CESG, protein structure initiative, str	99.35
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	95.25
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	95.08
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	94.51
3dfx_A	63	Trans-acting T-cell-specific transcription factor	94.34
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	93.59
1na6_A	404	Ecorii, restriction endonuclease ecorii; site-spec	91.61
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	89.66
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	88.78

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2

Probab=99.95  E-value=1.1e-27  Score=215.34  Aligned_cols=116  Identities=38%  Similarity=0.685  Sum_probs=100.9

Q ss_pred             cCCCCcccccEEEeccccCCCCCCceEeehhhhhhcCCCCCC---CCCceEEEEECCCCeEEEEEEEcCCCCCcceEec-
Q 039386          321 GDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQ---SEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLE-  396 (582)
Q Consensus       321 ~~~~~~~~~LF~KvLT~SDVg~~gRLVIPK~~AEa~FP~Ld~---~eGv~L~v~D~~Gk~W~FRf~yw~Nn~SR~YvLt-  396 (582)
                      +....+..++|+|+||+|||++++||+||+++|+.|||.++.   .+++.|.++|.+|++|+|+|+||  +.+++|+|+ 
T Consensus         4 ~~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~--~~~~~~~Lt~   81 (130)
T 1wid_A            4 GSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW--NSSQSYVLTK   81 (130)
T ss_dssp             ----CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEE--TTTTEEEEES
T ss_pred             CCCCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEE--CCCCceEEcC
Confidence            445667788999999999999889999999999999999985   46799999999999999999999  556788886 


Q ss_pred             CchhhhhccCCccccccccccccccCceEEEEeeC-CCCeEEEeEEeCCCCCCCc
Q 039386          397 GVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRID-PGGKLVMGFRKAPIPGDMQ  450 (582)
Q Consensus       397 GWs~FVrsK~LqAGD~i~iy~~~~~~~kVvFsR~~-~~GkL~IG~RRa~~~~~~~  450 (582)
                      ||..||++|+|++||+            |+|++.+ ++++|+|++||+..+...|
T Consensus        82 GW~~FV~~~~L~~GD~------------~~F~~~~~~~~~l~I~~rr~~~~~~~~  124 (130)
T 1wid_A           82 GWSRFVKEKNLRAGDV------------VSFSRSNGQDQQLYIGWKSRSGSDLDA  124 (130)
T ss_dssp             SHHHHHHHTTCCTTCE------------EEEEECCSSSCCEEEEEECCCSCSSCC
T ss_pred             ChHHHHHHcCCCCCCE------------EEEEEecCCCcEEEEEEEECCCCCccc
Confidence            9999999999999999            9999986 4579999999998766443

>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}

Probab=99.58  E-value=5.9e-15  Score=135.60  Aligned_cols=114  Identities=22%  Similarity=0.267  Sum_probs=89.6

Q ss_pred             CCChHHHHhh---hcCCCCcccccEEEeccccCCCCCCceEeehhhhhhcCCCCCCCCCceEEEEECCCCeEEEEEEEcC
Q 039386          310 RITDQELQQL---SGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWP  386 (582)
Q Consensus       310 ~~td~e~qq~---s~~~~~~~~~LF~KvLT~SDVg~~gRLVIPK~~AEa~FP~Ld~~eGv~L~v~D~~Gk~W~FRf~yw~  386 (582)
                      .+|++|.+..   +.... ...+.|.|+|++|||.+..+|+||++.|+.|||..+    ..|.++|. |+.|.|++.|+.
T Consensus        26 ~~t~~~k~~a~~~A~~~~-s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~----~~i~L~~~-gk~W~v~~~~~~   99 (146)
T 4i1k_A           26 TVTAEERERAINAAKTFE-PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS----GFIKVQLA-EKQWPVRCLYKA   99 (146)
T ss_dssp             CCCHHHHHHHHHHHHHCC-CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC----SEEEEEET-TEEEEEEEEEET
T ss_pred             CCCHHHHHHHHHHHHHcC-CCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC----eEEEEEEC-CcEEEEEEEEeC
Confidence            4777655432   22222 346799999999999876689999999999999764    67888998 699999999983


Q ss_pred             CCCCcceEecCchhhhhccCCccccccccccccccCceEEEEeeCCCC-eEEEeEEeCC
Q 039386          387 NNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRIDPGG-KLVMGFRKAP  444 (582)
Q Consensus       387 Nn~SR~YvLtGWs~FVrsK~LqAGD~i~iy~~~~~~~kVvFsR~~~~G-kL~IG~RRa~  444 (582)
                         +++++..||..||++++|++||+            ++|...+... .|.|.+-|+.
T Consensus       100 ---~~~~ls~GW~~Fv~dn~L~~GD~------------cvFeli~~~~~~f~V~IfR~~  143 (146)
T 4i1k_A          100 ---GRAKFSQGWYEFTLENNLGEGDV------------CVFELLRTRDFVLKVTAFRVN  143 (146)
T ss_dssp             ---TEEEECTTHHHHHHHTTCCTTCE------------EEEEECSSSSCEEEEEEECCC
T ss_pred             ---CcEEECCchHHHHHHcCCCCCCE------------EEEEEecCCceEEEEEEEecc
Confidence               35555569999999999999999            9999886432 5777777653

>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2

Probab=99.35  E-value=2.4e-12  Score=110.85  Aligned_cols=92  Identities=13%  Similarity=0.227  Sum_probs=74.6

Q ss_pred             ccccEEEeccccCCCCCCceEeehhhhhhcCCCCCCCCCceEEEEECCCCeEEEEEEEcCCCCCcceEecCchhhhhccC
Q 039386          327 IVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQ  406 (582)
Q Consensus       327 ~~~LF~KvLT~SDVg~~gRLVIPK~~AEa~FP~Ld~~eGv~L~v~D~~Gk~W~FRf~yw~Nn~SR~YvLtGWs~FVrsK~  406 (582)
                      ..+.|.|+|+++|.  ..+|.||++.++.+.+.+    +..+.++|..|+.|.+++.++.   .+.++..||..||++++
T Consensus         7 ~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~----~~~v~L~~~~G~~W~v~~~~~~---~~~~l~~GW~~Fv~~~~   77 (104)
T 1yel_A            7 GEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF----PITVDLLDYSGRSWTVRMKKRG---EKVFLTVGWENFVKDNN   77 (104)
T ss_dssp             CCEEEEEECCHHHH--TTCEECCHHHHTTCCCCC----CSEEEEEETTSCEEEEEEEEET---TEEEECTTHHHHHHHHT
T ss_pred             CCCCEEEEECCCCc--cceEECCHHHHHhcCccC----CCEEEEECCCCCEEEEEEEEEC---CcEEEccChHHHHHHcC
Confidence            45689999999994  479999999998876544    3689999999999999999872   34444459999999999


Q ss_pred             CccccccccccccccCceEEEEeeCCCCeEEEeE
Q 039386          407 LRAGDTSMIHSILTRDDKITFSRIDPGGKLVMGF  440 (582)
Q Consensus       407 LqAGD~i~iy~~~~~~~kVvFsR~~~~GkL~IG~  440 (582)
                      |++||.            ++|.... +..+.|-+
T Consensus        78 L~~GD~------------lvF~~~~-~~~f~V~I   98 (104)
T 1yel_A           78 LEDGKY------------LQFIYDR-DRTFYVII   98 (104)
T ss_dssp             CCTTCE------------EEEEECS-SSEEEEEE
T ss_pred             CCCCCE------------EEEEEcC-CCeEEEEE
Confidence            999999            9998764 56666654

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=95.25  E-value=0.0069  Score=45.86  Aligned_cols=33  Identities=33%  Similarity=0.696  Sum_probs=27.2

Q ss_pred             ccccCCCCCCCCCcccccCeeeccCCchhhchhhhhhccc
Q 039386            4 RICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYEN   43 (582)
Q Consensus         4 k~C~N~~C~~~~~~~wrkGW~lrsG~~a~LC~~CgsayE~   43 (582)
                      +.|.|  |+++.+..||+|.   .|.  .||+.||.-|..
T Consensus         2 ~~C~~--C~tt~Tp~WR~gp---~G~--~LCNaCGl~~k~   34 (43)
T 2vut_I            2 TTCTN--CFTQTTPLWRRNP---EGQ--PLCNACGLFLKL   34 (43)
T ss_dssp             CCCSS--SCCCCCSCCEECT---TSC--EECHHHHHHHHH
T ss_pred             CcCCc--cCCCCCCccccCC---CCC--cccHHHHHHHHH
Confidence            46665  9999999999995   576  899999997753

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=95.08  E-value=0.0097  Score=45.67  Aligned_cols=34  Identities=32%  Similarity=0.735  Sum_probs=27.9

Q ss_pred             CccccCCCCCCCCCcccccCeeeccCCchhhchhhhhhccc
Q 039386            3 PRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYEN   43 (582)
Q Consensus         3 ~k~C~N~~C~~~~~~~wrkGW~lrsG~~a~LC~~CgsayE~   43 (582)
                      .+.|.|  |+++.+..||+|.   .|.  .||+.||.-|..
T Consensus         4 ~~~C~~--C~tt~Tp~WR~gp---~G~--~LCNaCGl~~k~   37 (46)
T 1gnf_A            4 ARECVN--CGATATPLWRRDR---TGH--YLCNACGLYHKM   37 (46)
T ss_dssp             SCCCTT--TCCCCCSSCBCCT---TCC--CBCSHHHHHHHH
T ss_pred             CCCCCC--cCCCCCCcCccCC---CCC--ccchHHHHHHHH
Confidence            467765  9999999999997   565  899999996643

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=94.51  E-value=0.01  Score=48.65  Aligned_cols=34  Identities=35%  Similarity=0.750  Sum_probs=28.6

Q ss_pred             CccccCCCCCCCCCcccccCeeeccCCchhhchhhhhhccc
Q 039386            3 PRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYEN   43 (582)
Q Consensus         3 ~k~C~N~~C~~~~~~~wrkGW~lrsG~~a~LC~~CgsayE~   43 (582)
                      .+.|.|  |+++.|..||+|.   .|.  .||..||.-|..
T Consensus         9 ~~~C~~--C~t~~Tp~WR~gp---~G~--~LCNaCGl~~~~   42 (66)
T 4gat_A            9 PTTCTN--CFTQTTPLWRRNP---EGQ--PLCNACGLFLKL   42 (66)
T ss_dssp             SCCCTT--TCCCCCSSCEEET---TTE--EECHHHHHHHHH
T ss_pred             CCCCCC--CCCCCCCcCCcCC---CCC--CccHHHHHHHHH
Confidence            467765  9999999999997   576  899999998864

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=94.34  E-value=0.015  Score=47.30  Aligned_cols=36  Identities=31%  Similarity=0.702  Sum_probs=29.3

Q ss_pred             CccccCCCCCCCCCcccccCeeeccCCchhhchhhhhhccccc
Q 039386            3 PRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFI   45 (582)
Q Consensus         3 ~k~C~N~~C~~~~~~~wrkGW~lrsG~~a~LC~~CgsayE~~~   45 (582)
                      .+.|.|  |+++.|..||+|.   .|.  .||+.||.-|....
T Consensus         7 ~~~C~~--C~tt~Tp~WR~gp---~G~--~LCNACGl~~~~~~   42 (63)
T 3dfx_A            7 GTSCAN--CQTTTTTLWRRNA---NGD--PVCNACGLYYKLHN   42 (63)
T ss_dssp             TCCCTT--TCCSCCSSCCCCT---TSC--CCCHHHHHHHHHHS
T ss_pred             CCcCCC--cCCCCCCccCCCC---CCC--chhhHHHHHHHHcC
Confidence            356765  9999999999997   466  89999999887543

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=93.59  E-value=0.024  Score=47.05  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=27.6

Q ss_pred             CccccCCCCCCCCCcccccCeeeccCCchhhchhhhhhccc
Q 039386            3 PRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYEN   43 (582)
Q Consensus         3 ~k~C~N~~C~~~~~~~wrkGW~lrsG~~a~LC~~CgsayE~   43 (582)
                      .+.|.|  |+++.|..||+|+.-. |   .||..||.-|..
T Consensus         8 ~~~C~n--C~tt~Tp~WRrg~~~~-g---~LCNACGl~~~~   42 (71)
T 2kae_A            8 SFQCSN--CSVTETIRWRNIRSKE-G---IQCNACFIYQRK   42 (71)
T ss_dssp             CCCCSS--SCCSCCSSCCCCSSSS-C---CCSSHHHHHHHH
T ss_pred             CCcCCc--cCCCCCCccccCCCCC-C---ccchHHHHHHHH
Confidence            367876  9999999999986322 2   899999998754

>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A

Probab=91.61  E-value=0.21  Score=53.10  Aligned_cols=86  Identities=17%  Similarity=0.146  Sum_probs=60.8

Q ss_pred             ccccEEEeccccCCCC----CCceEeehhhhhhcCCCCCCC---CC-ce--EEEEECCCCeEEEEEEEcCC----CCCcc
Q 039386          327 IVPLFEKILSASDAGR----IGRLVLPKACAEAYFPHISQS---EG-VP--LRVQDVKGKEWVFQFRFWPN----NNSRM  392 (582)
Q Consensus       327 ~~~LF~KvLT~SDVg~----~gRLVIPK~~AEa~FP~Ld~~---eG-v~--L~v~D~~Gk~W~FRf~yw~N----n~SR~  392 (582)
                      -...|.|.|++.|++.    ...+.+||..++.+||.|...   .. +.  +.+-|...-.+.++++|+.|    ..+..
T Consensus        17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE   96 (404)
T 1na6_A           17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE   96 (404)
T ss_dssp             SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred             cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCc
Confidence            3568999999999995    458999998789999988732   22 22  33334434455999999931    23457


Q ss_pred             eEecCch-hhhhccCCccccc
Q 039386          393 YVLEGVT-PCIQSMQLRAGDT  412 (582)
Q Consensus       393 YvLtGWs-~FVrsK~LqAGD~  412 (582)
                      |-|+.|. .+.=.....+||.
T Consensus        97 yRLt~~~~~~~~~~~a~~GDL  117 (404)
T 1na6_A           97 KRITRWGRGSPLQDPENTGAL  117 (404)
T ss_dssp             EEEECCCTTSGGGCGGGTTCE
T ss_pred             eEEeecCCCCcccccCCCCCE
Confidence            8888774 4555677888998

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=89.66  E-value=0.08  Score=50.53  Aligned_cols=56  Identities=21%  Similarity=0.542  Sum_probs=43.6

Q ss_pred             chhhhhhcccccccccccCCCCCcccccccCCcccccccccc-ccceeec----CCCcccccccCCCc
Q 039386           34 CYDCGSAYENFIFCNTFHLEEPGWRECNFCSKRLHCGCRASN-SFLELLD----YGGVGCRSCAMSPR   96 (582)
Q Consensus        34 C~~CgsayE~~~FCe~FH~~~sGWR~C~~C~KrlHcgCi~s~-~~f~lLD----~GGv~C~~C~~~~~   96 (582)
                      |.-|+..|....|       +.-|..|..|..|+|-.|+.-. ..+++++    .....|..|..+..
T Consensus         5 CpiC~k~Y~~~~~-------~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~   65 (183)
T 3lqh_A            5 CPLCDKCYDDDDY-------ESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP   65 (183)
T ss_dssp             CTTTCCBCTTCCT-------TCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred             CCCCcCccCCccc-------CCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence            8888888888765       5679999999999999999542 2245553    34789999998864

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=88.78  E-value=0.18  Score=45.03  Aligned_cols=78  Identities=21%  Similarity=0.446  Sum_probs=44.3

Q ss_pred             CccccCCCCCCCCCcccccCeeeccCCchhhchhhhhhccccccccccc-------CCCCCcccccccCCcccccccccc
Q 039386            3 PRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFH-------LEEPGWRECNFCSKRLHCGCRASN   75 (582)
Q Consensus         3 ~k~C~N~~C~~~~~~~wrkGW~lrsG~~a~LC~~CgsayE~~~FCe~FH-------~~~sGWR~C~~C~KrlHcgCi~s~   75 (582)
                      .+.|.|  |+++.+..||+|   -.|.  .||+.||.-|-.-.+=.-..       .....=+.|..|+-       ...
T Consensus         5 ~~~C~~--Cg~~~Tp~WRr~---~~g~--~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t-------~~t   70 (115)
T 4hc9_A            5 GRECVN--CGATSTPLWRRD---GTGH--YLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQT-------TTT   70 (115)
T ss_dssp             -CCCTT--TCCSCCSSCEEC---TTSC--EECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCC-------SCC
T ss_pred             CCCCCC--CCCccCCcceEC---CCCC--CcCcchhhhhhhcccccccccccccccccccccccCCCcCC-------CCc
Confidence            366754  999999999998   4453  69999999653211111000       01122356766653       122


Q ss_pred             ccceeecCCCcccccccCC
Q 039386           76 SFLELLDYGGVGCRSCAMS   94 (582)
Q Consensus        76 ~~f~lLD~GGv~C~~C~~~   94 (582)
                      ...--=+.|-+-|-+|.--
T Consensus        71 p~WRr~~~g~~lCNaCgl~   89 (115)
T 4hc9_A           71 TLWRRNANGDPVCNACGLY   89 (115)
T ss_dssp             SSCEECTTSCEECHHHHHH
T ss_pred             ceeEECCCCCCcchHHHHH
Confidence            3333335666788888643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	582
d1wida_	117	b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre	3e-26
d1na6a1	175	b.142.1.1 (A:4-178) Restriction endonuclease EcoRI	1e-20
d1yela1	102	b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid	2e-10

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  101 bits (253), Expect = 3e-26
 Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 17/120 (14%)

Query: 329 PLFEKILSASDAGRIGRLVLPKACAEAYFPHISQS---EGVPLRVQDVKGKEWVFQFRFW 385
            LFEK ++ SD G++ RLV+PK  AE +FP  S +   +GV L  +DV GK W F++ +W
Sbjct: 5   ALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW 64

Query: 386 PNNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRIDP-GGKLVMGFRKAP 444
            ++ S +   +G +  ++   LRAGD             ++FSR +    +L +G++   
Sbjct: 65  NSSQSYVL-TKGWSRFVKEKNLRAGDV------------VSFSRSNGQDQQLYIGWKSRS 111

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: Type II restriction endonuclease effector domain
domain: Restriction endonuclease EcoRII, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 87.3 bits (216), Expect = 1e-20
 Identities = 21/164 (12%), Positives = 40/164 (24%), Gaps = 33/164 (20%)

Query: 322 DLNSTIVPLFEKILSASDAGRIGR----LVLPKACAEAYFPHISQSE------GVPLRVQ 371
           ++      ++ K LSA+D G  G     L +P    E  FP I+ +        +   V 
Sbjct: 9   EIACENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVS 68

Query: 372 DVKGKEWVFQFRFWPN-------NNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDK 424
                +   +  ++ +       N  R+      +P         G              
Sbjct: 69  SHDCPDSEARAIYYNSAHFGKTRNEKRITRWGRGSPLQD--PENTGAL------------ 114

Query: 425 ITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNG--CPGESF 466
              +                +     +        G   PG   
Sbjct: 115 TLLAFKLDEQGGDCKEVNIWVCASTDEEDVIETAIGEVIPGALI 158

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 55.7 bits (134), Expect = 2e-10
 Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 9/84 (10%)

Query: 329 PLFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNN 388
             F K   +  + +   L +P    E +      +    + + D  G+ W  + +     
Sbjct: 7   VQFMKPFISEKSSK--SLEIPLGFNEYFPAPFPIT----VDLLDYSGRSWTVRMK---KR 57

Query: 389 NSRMYVLEGVTPCIQSMQLRAGDT 412
             ++++  G    ++   L  G  
Sbjct: 58  GEKVFLTVGWENFVKDNNLEDGKY 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	582
d1wida_	117	DNA-binding protein RAV1 {Thale cress (Arabidopsis	99.92
d1na6a1	175	Restriction endonuclease EcoRII, N-terminal domain	99.7
d1yela1	102	At1g16640 {Thale cress (Arabidopsis thaliana) [Tax	99.28
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	96.37
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	94.35
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	93.06
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	85.65

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=3.2e-25  Score=192.10  Aligned_cols=108  Identities=35%  Similarity=0.679  Sum_probs=94.3

Q ss_pred             ccccEEEeccccCCCCCCceEeehhhhhhcCCCCCCC---CCceEEEEECCCCeEEEEEEEcCCCCCcceEecCchhhhh
Q 039386          327 IVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQS---EGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQ  403 (582)
Q Consensus       327 ~~~LF~KvLT~SDVg~~gRLVIPK~~AEa~FP~Ld~~---eGv~L~v~D~~Gk~W~FRf~yw~Nn~SR~YvLtGWs~FVr  403 (582)
                      ..++|+|+||+|||++.+||+||+++|++|||+++..   +++.|.+.|.+|++|.|+|+||. +..++++..||..||+
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~-~~~~~~l~~GW~~Fv~   81 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWN-SSQSYVLTKGWSRFVK   81 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEET-TTTEEEEESSHHHHHH
T ss_pred             CceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEEC-CCCceEEecCHHHHHH
Confidence            4579999999999998899999999999999998764   57899999999999999999994 3333344569999999


Q ss_pred             ccCCccccccccccccccCceEEEEeeC-CCCeEEEeEEeCCCCC
Q 039386          404 SMQLRAGDTSMIHSILTRDDKITFSRID-PGGKLVMGFRKAPIPG  447 (582)
Q Consensus       404 sK~LqAGD~i~iy~~~~~~~kVvFsR~~-~~GkL~IG~RRa~~~~  447 (582)
                      +++|++||+            |+|+|.+ ++++|+|++||++...
T Consensus        82 ~~~Lk~GD~------------~~F~~~~~~~~~~~i~~r~~~~~~  114 (117)
T d1wida_          82 EKNLRAGDV------------VSFSRSNGQDQQLYIGWKSRSGSD  114 (117)
T ss_dssp             HTTCCTTCE------------EEEEECCSSSCCEEEEEECCCSCS
T ss_pred             HcCCCCCCE------------EEEEEEeCCCCEEEEEEEECCCCC
Confidence            999999999            9999986 4579999999998654

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: Type II restriction endonuclease effector domain
domain: Restriction endonuclease EcoRII, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=7.6e-19  Score=163.94  Aligned_cols=126  Identities=13%  Similarity=0.043  Sum_probs=91.7

Q ss_pred             CCcccccEEEeccccCCCCCCc----eEeehhhhhhcCCCCCCCC------CceEEEEECCCCeEEEEEEEcCC----CC
Q 039386          324 NSTIVPLFEKILSASDAGRIGR----LVLPKACAEAYFPHISQSE------GVPLRVQDVKGKEWVFQFRFWPN----NN  389 (582)
Q Consensus       324 ~~~~~~LF~KvLT~SDVg~~gR----LVIPK~~AEa~FP~Ld~~e------Gv~L~v~D~~Gk~W~FRf~yw~N----n~  389 (582)
                      .+...++|+|+||+|||+++||    |+|||++||.+||+|+..+      ++.+.+.|.+|++|+|||+||.|    ..
T Consensus        11 ~~~~~~~F~K~LtasD~g~tg~HQaG~~IPK~~ae~~FP~l~~~~e~nP~~~l~~~i~d~~g~~w~fR~iYyn~~~~ggT   90 (175)
T d1na6a1          11 ACENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKT   90 (175)
T ss_dssp             HHSSEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSC
T ss_pred             CCCceEEEEEEcccccccccCCccceeeecHHHHHHhCCCCCcccccCCCceEEEEEecCCCCeeEEEEEEECCccCCCc
Confidence            3456889999999999999886    9999999999999998643      34456779999999999999943    12


Q ss_pred             CcceEec-CchhhhhccCCccccccccccccccCceEEEEeeCCCCeEEEeEEeCCCCCCCcccccccccCCC
Q 039386          390 SRMYVLE-GVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRIDPGGKLVMGFRKAPIPGDMQDAQTSAITNGC  461 (582)
Q Consensus       390 SR~YvLt-GWs~FVrsK~LqAGD~i~iy~~~~~~~kVvFsR~~~~GkL~IG~RRa~~~~~~~~~~~~~~~ng~  461 (582)
                      +..|.++ .|..|+..+.+.+||+            ++|.+..+.+....++...-+-.+.++.......+|-
T Consensus        91 RneyRiT~~g~~~~~~~~~n~G~l------------~i~af~~~~~~~~~~~~~vwvc~~~~e~d~le~~iGe  151 (175)
T d1na6a1          91 RNEKRITRWGRGSPLQDPENTGAL------------TLLAFKLDEQGGDCKEVNIWVCASTDEEDVIETAIGE  151 (175)
T ss_dssp             CCEEEEECCCTTSGGGCGGGTTCE------------EEEEEECCTTSCCCCEEEEEECCSHHHHHHHHHHHCC
T ss_pred             cccEEEEeccccccccCccccccE------------EEEEeecCCCCCceeEEEEEEecCcchhHHHHhcccc
Confidence            5789888 6789999999999999            8998864333222222222233344444455555555

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.28  E-value=4.5e-12  Score=107.64  Aligned_cols=91  Identities=13%  Similarity=0.269  Sum_probs=75.4

Q ss_pred             cccEEEeccccCCCCCCceEeehhhhhhcCCCCCCCCCceEEEEECCCCeEEEEEEEcCCCCCcceEecCchhhhhccCC
Q 039386          328 VPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQL  407 (582)
Q Consensus       328 ~~LF~KvLT~SDVg~~gRLVIPK~~AEa~FP~Ld~~eGv~L~v~D~~Gk~W~FRf~yw~Nn~SR~YvLtGWs~FVrsK~L  407 (582)
                      .+-|.|+|.++++.  .+|.||+..+..+.+.+.    ..|.++|..|+.|.+++...   +..+|+..||..||++++|
T Consensus         6 ~~~Ffkv~~~~~~~--~~L~IP~~F~~~~~~~~~----~~i~L~d~~G~~W~v~~~~~---~~~~~~~~GW~~Fv~~n~L   76 (102)
T d1yela1           6 EVQFMKPFISEKSS--KSLEIPLGFNEYFPAPFP----ITVDLLDYSGRSWTVRMKKR---GEKVFLTVGWENFVKDNNL   76 (102)
T ss_dssp             CEEEEEECCHHHHT--TCEECCHHHHTTCCCCCC----SEEEEEETTSCEEEEEEEEE---TTEEEECTTHHHHHHHHTC
T ss_pred             CCeEEEEEcCcccC--CCEECCHHHHHhCCCCCC----CEEEEEcCCCCEEEEEEEEe---CCeEEEccCHHHHHHHcCC
Confidence            44689999999976  689999999988776553    67899999999999998865   3566777799999999999


Q ss_pred             ccccccccccccccCceEEEEeeCCCCeEEEeE
Q 039386          408 RAGDTSMIHSILTRDDKITFSRIDPGGKLVMGF  440 (582)
Q Consensus       408 qAGD~i~iy~~~~~~~kVvFsR~~~~GkL~IG~  440 (582)
                      ++||.            ++|.... +..+.|.+
T Consensus        77 ~~GD~------------~vF~~~~-~~~f~V~I   96 (102)
T d1yela1          77 EDGKY------------LQFIYDR-DRTFYVII   96 (102)
T ss_dssp             CTTCE------------EEEEECS-SSEEEEEE
T ss_pred             CcCCE------------EEEEEcC-CcEEEEEE
Confidence            99999            9998764 66666654

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.37  E-value=0.00058  Score=49.29  Aligned_cols=34  Identities=32%  Similarity=0.749  Sum_probs=28.6

Q ss_pred             CCccccCCCCCCCCCcccccCeeeccCCchhhchhhhhhcc
Q 039386            2 GPRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYE   42 (582)
Q Consensus         2 ~~k~C~N~~C~~~~~~~wrkGW~lrsG~~a~LC~~CgsayE   42 (582)
                      +.+.|.|  |+++.+..||+|.   +|.  .||+.||.-|-
T Consensus         1 e~r~C~~--Cgtt~Tp~WR~gp---~G~--~LCNACGl~~r   34 (39)
T d1y0ja1           1 EARECVN--CGATATPLWRRDR---TGH--YLCNACGLYHK   34 (39)
T ss_dssp             CCCCCSS--SCCCCCSCCEECT---TSC--EECSSHHHHHH
T ss_pred             CcCCCCC--CCCCCCcccccCC---CCC--EeeHHhHHHHH
Confidence            4688987  9999999999995   674  69999999774

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=94.35  E-value=0.007  Score=44.15  Aligned_cols=30  Identities=37%  Similarity=0.847  Sum_probs=25.2

Q ss_pred             cccCCCCCCCCCcccccCeeeccCCchhhchhhhhhc
Q 039386            5 ICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAY   41 (582)
Q Consensus         5 ~C~N~~C~~~~~~~wrkGW~lrsG~~a~LC~~Cgsay   41 (582)
                      .|.|  |+++.+..||+|   ..|  ..||+.||.-|
T Consensus         2 ~C~n--C~tt~Tp~WRr~---~~G--~~lCNACGl~~   31 (42)
T d2vuti1           2 TCTN--CFTQTTPLWRRN---PEG--QPLCNACGLFL   31 (42)
T ss_dssp             CCSS--SCCCCCSCCEEC---TTS--CEECHHHHHHH
T ss_pred             cCCC--CCCCCCccceeC---CCC--CCchhhhhHHH
Confidence            4665  999999999998   567  47999999966

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.06  E-value=0.016  Score=45.64  Aligned_cols=33  Identities=33%  Similarity=0.862  Sum_probs=27.7

Q ss_pred             ccccCCCCCCCCCcccccCeeeccCCchhhchhhhhhccc
Q 039386            4 RICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYEN   43 (582)
Q Consensus         4 k~C~N~~C~~~~~~~wrkGW~lrsG~~a~LC~~CgsayE~   43 (582)
                      ..|.|  |++..+..||+|   -.|.  .||..||.-|-.
T Consensus         5 ~~C~n--Cgt~~Tp~WRr~---~~G~--~lCNACGl~~~~   37 (66)
T d3gata_           5 TVCSN--CQTSTTTLWRRS---PMGD--PVCNACGLYYKL   37 (66)
T ss_dssp             CCCTT--TCCCCCSSEEEC---TTSC--EEEHHHHHHHHH
T ss_pred             CCCCC--CCCCCCcccccC---CCCC--cccchhHHHHHH
Confidence            46876  999999999998   5774  699999998854

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.65  E-value=0.13  Score=38.57  Aligned_cols=40  Identities=20%  Similarity=0.419  Sum_probs=29.9

Q ss_pred             CcccccccCCccccccccccccceeecCCCcccccccCCCc
Q 039386           56 GWRECNFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPR   96 (582)
Q Consensus        56 GWR~C~~C~KrlHcgCi~s~~~f~lLD~GGv~C~~C~~~~~   96 (582)
                      -|-.|..|++|.|--|+--. ....-+...-.|..|.+++.
T Consensus        21 ~~I~Cd~C~~w~H~~C~~~~-~~~~~~~~~w~C~~C~~~~~   60 (64)
T d1we9a_          21 FWICCDLCEMWFHGKCVKIT-PARAEHIKQYKCPSCSNKSG   60 (64)
T ss_dssp             CEEECSSSCCEEETTTTTCC-TTGGGGCSSCCCHHHHTTTC
T ss_pred             CEEEcCCCCccCCcccCCcC-hHHCCCCCeEECcCCcCcCC
Confidence            49999999999999999532 22223445788999988753