Citrus Sinensis ID: 039394

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASSYM
Secondary Structure (PSIPRED)
ccEEEcccccccccccHHHHccccccccccccccccccHHccccccccEEEcccccccccccccccccHHHHHccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHcccccEEEccccccEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccccHHHHHHHHHHHHccccccccccHHHcccccccEEEcccccccccccHHHcccccHHHHccccccEEEEcccccccccccHHHHHcccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcc
Coil and Loop (DISEMBL)
meyldlsdnqlseeiphcsRYWQSLKVLKSnhingcvpirlcyvrpvqvldisyssilgdIIIVSMIDLQMVQKKNSIAIINVVVVGelfkrpiptkidqLTMLHAldlsrnqpigkipegisqlGLLGVLSlsnnklsgkipsgtklqtldassym
Flexible Loop (DISEMBL)
meyldlsdnqlseeiPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSnnklsgkipsgtklqtldassym
Low Complexity Region (SEG)
MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEgisqlgllgvlslsnnklsgkiPSGTKLQTLDASSYM
Disordered region (IsUnstruct)
**************IPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSL************************
Disordered Region (DISOPRED)
MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASSYM
Disordered Region (DISEMBL)
MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASSYM
Disordered Region (DISPRO)
MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASSYM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASSYM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
C0LGX3	993	LRR receptor-like serine/	yes	no	0.834	0.131	0.287	4e-12
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.917	0.126	0.347	2e-11
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.904	0.139	0.333	1e-10
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.929	0.139	0.322	4e-10
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.910	0.122	0.298	6e-10
Q9LJF3	1164	Receptor-like protein kin	no	no	0.917	0.123	0.290	1e-09
Q9FL28	1173	LRR receptor-like serine/	no	no	0.847	0.113	0.303	1e-09
P47735	999	Receptor-like protein kin	no	no	0.929	0.146	0.306	2e-09
C0LGW6	966	LRR receptor-like serine/	no	no	0.859	0.139	0.296	3e-09
Q9FL51	872	Probably inactive leucine	no	no	0.840	0.151	0.296	4e-09

>sp|C0LGX3|HSL2_ARATH LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 43/174 (24%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQ----------------------------SLKVLKSNH 32
           + Y+ ++DN+LS E+P  +R+W+                            S   + +N+
Sbjct: 413 LNYIRMADNKLSGEVP--ARFWELPLTRLELANNNQLQGSIPPSISKARHLSQLEISANN 470

Query: 33  INGCVPIRLCYVRPVQVLDISYSSILGDI--IIVSMIDLQMVQKKNSIAIINVVVVGELF 90
            +G +P++LC +R ++V+D+S +S LG I   I  + +L+ V+ + ++      + GE  
Sbjct: 471 FSGVIPVKLCDLRDLRVIDLSRNSFLGSIPSCINKLKNLERVEMQENM------LDGE-- 522

Query: 91  KRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPS 144
              IP+ +   T L  L+LS N+  G IP  +  L +L  L LSNN+L+G+IP+
Sbjct: 523 ---IPSSVSSCTELTELNLSNNRLRGGIPPELGDLPVLNYLDLSNNQLTGEIPA 573

Receptor-like serine/threonine-kinase acting on substrates that controls floral organ abscission. Regulated by the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) family of ligands.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 17/161 (10%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL 58
           +E L L++N L+ EIP   +   SL VL  + N + G +P  L Y++ ++VL +  +S  
Sbjct: 358 LEELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFS 417

Query: 59  GDIIIVSMIDLQMVQKKNSIAIINVVVVGEL-FKRPIPTKIDQLTMLHALDLSRNQPIGK 117
           G  +  SM++LQ +++ N         +GE       P ++  LT L  LDLS N+  G 
Sbjct: 418 G-YVPSSMVNLQQLERLN---------LGENNLNGSFPVELMALTSLSELDLSGNRFSGA 467

Query: 118 IPEGISQLGLLGVLSLSNNKLSGKIPSGT----KLQTLDAS 154
           +P  IS L  L  L+LS N  SG+IP+      KL  LD S
Sbjct: 468 VPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLS 508

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 78/171 (45%), Gaps = 29/171 (16%)

Query: 3   YLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPI------------RLCYVRPVQ-- 48
           YLDLS+N    EIPH     QSL V K N +    P              L Y +P    
Sbjct: 477 YLDLSNNTFIGEIPHSLTSLQSL-VSKENAVEEPSPDFPFFKKKNTNAGGLQYNQPSSFP 535

Query: 49  -VLDISYSSILGDII--IVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLH 105
            ++D+SY+S+ G I      +  L ++  KN+    N           IP  +  +T L 
Sbjct: 536 PMIDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSGN-----------IPANLSGMTSLE 584

Query: 106 ALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASSY 156
            LDLS N   G IP  + +L  L   S++ NKLSG IP+G + QT   SS+
Sbjct: 585 VLDLSHNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPTGVQFQTFPNSSF 635

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 15/161 (9%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSL-KV-LKSNHINGCVPIRLCYVRPVQVLDISYSSIL 58
           +E L L DN     +P   R  +SL +V  K N  +G +         +  +D+S ++  
Sbjct: 408 LENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFH 467

Query: 59  GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
           G +      + +  QK  +  + N  + G      IP +I  +T L  LDLS N+  G++
Sbjct: 468 GQL----SANWEQSQKLVAFILSNNSITGA-----IPPEIWNMTQLSQLDLSSNRITGEL 518

Query: 119 PEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASS 155
           PE IS +  +  L L+ N+LSGKIPSG    T L+ LD SS
Sbjct: 519 PESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSS 559

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 21/164 (12%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLK-----SNHINGCVPIRLCYVRPVQVLDISYS 55
           +  LDLS N  +  +P      QS  VL+     +N+++G VP+ L   + ++ +D+S++
Sbjct: 377 LRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLSGTVPMELGKCKSLKTIDLSFN 436

Query: 56  SILGDI-----IIVSMIDLQMVQKKNSIAIINVVVV-----------GELFKRPIPTKID 99
            + G I     ++ ++ DL M     +  I   V V             L    IP  I 
Sbjct: 437 ELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPESIS 496

Query: 100 QLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP 143
           + T +  + LS N+  GKIP GI  L  L +L L NN LSG +P
Sbjct: 497 RCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVP 540

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 21/165 (12%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLK-----SNHINGCVPIRLCYVRPVQVLDISYS 55
           +  LDLS N+ + E+P      QS  VL+     +N+++G VP+ L   + ++ +D+S++
Sbjct: 377 LRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPVELGKCKSLKTIDLSFN 436

Query: 56  SILGDI-----IIVSMIDLQMVQKKNSIAIINVVVV-----------GELFKRPIPTKID 99
           ++ G I      +  + DL M     +  I   + V             L    +P  I 
Sbjct: 437 ALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETLILNNNLLTGSLPESIS 496

Query: 100 QLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPS 144
           + T +  + LS N   G+IP GI +L  L +L L NN L+G IPS
Sbjct: 497 KCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPS 541

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 12/145 (8%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSIL 58
           + +L LS+N L   I     + +SL+VL   SN+  G  P  +  +R + VL + +++I 
Sbjct: 314 LTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNIS 373

Query: 59  GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
           G++      DL ++    +++  + ++ G     PIP+ I   T L  LDLS NQ  G+I
Sbjct: 374 GEL----PADLGLLTNLRNLSAHDNLLTG-----PIPSSISNCTGLKLLDLSHNQMTGEI 424

Query: 119 PEGISQLGLLGVLSLSNNKLSGKIP 143
           P G  ++ L   +S+  N  +G+IP
Sbjct: 425 PRGFGRMNLT-FISIGRNHFTGEIP 448

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P47735|RLK5_ARATH Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 14/160 (8%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSIL 58
           +++L++S N LS+ IP     ++ L+ L    N ++G +P  L  V  ++ L ++Y+   
Sbjct: 141 LKFLEISGNNLSDTIPSSFGEFRKLESLNLAGNFLSGTIPASLGNVTTLKELKLAYNLFS 200

Query: 59  GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
              I   + +L  +Q    + +    +VG     PIP  + +LT L  LDL+ NQ  G I
Sbjct: 201 PSQIPSQLGNLTELQ---VLWLAGCNLVG-----PIPPSLSRLTSLVNLDLTFNQLTGSI 252

Query: 119 PEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDAS 154
           P  I+QL  +  + L NN  SG++P      T L+  DAS
Sbjct: 253 PSWITQLKTVEQIELFNNSFSGELPESMGNMTTLKRFDAS 292

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates that controls floral organ abscission. May interact with the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) ligands family.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 80/145 (55%), Gaps = 10/145 (6%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKV-LKSNHINGCVPIRLCYVRPVQVLDISYSSILG 59
            + LD+S NQ++ EIP+   + Q   + L+ N + G +P  +  ++ + VLD+S + ++G
Sbjct: 241 FQILDISYNQITGEIPYNIGFLQVATLSLQGNRLTGRIPEVIGLMQALAVLDLSDNELVG 300

Query: 60  DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP 119
            I  + + +L    K        + + G +   PIP+++  ++ L  L L+ N+ +G IP
Sbjct: 301 PIPPI-LGNLSFTGK--------LYLHGNMLTGPIPSELGNMSRLSYLQLNDNKLVGTIP 351

Query: 120 EGISQLGLLGVLSLSNNKLSGKIPS 144
             + +L  L  L+L+NN+L G IPS
Sbjct: 352 PELGKLEQLFELNLANNRLVGPIPS 376

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL51|Y5694_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 13/145 (8%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLKS--NHINGCVPIRLCYVRPVQVLDISYSSIL 58
           +E +++ +N  S EIPH     +SL    +  N  +G +P   C    + +++IS++ +L
Sbjct: 367 LEQVEIVNNSFSGEIPHGLGLVKSLYKFSASQNRFSGELPPNFCDSPVLSIVNISHNRLL 426

Query: 59  GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
           G I           + KN   ++++ + G  F   IP  +  L +L  LDLS N   G I
Sbjct: 427 GKI----------PELKNCKKLVSLSLAGNAFTGEIPPSLADLHVLTYLDLSDNSLTGLI 476

Query: 119 PEGISQLGLLGVLSLSNNKLSGKIP 143
           P+G+  L  L + ++S N LSG++P
Sbjct: 477 PQGLQNLK-LALFNVSFNGLSGEVP 500

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
147843620	722	hypothetical protein VITISV_031344 [Viti	0.993	0.216	0.347	2e-16
359490562	1412	PREDICTED: LRR receptor-like serine/thre	0.993	0.110	0.325	5e-16
357493295	1251	Receptor protein kinase-like protein [Me	0.949	0.119	0.322	8e-15
147839869	2041	hypothetical protein VITISV_037104 [Viti	1.0	0.076	0.293	1e-14
147834202	1270	hypothetical protein VITISV_011552 [Viti	0.968	0.119	0.315	3e-14
222630747	703	hypothetical protein OsJ_17682 [Oryza sa	0.955	0.213	0.333	3e-14
225462661	1485	PREDICTED: LRR receptor-like serine/thre	0.968	0.102	0.324	4e-14
147795695	1680	hypothetical protein VITISV_022720 [Viti	0.821	0.076	0.335	5e-14
359490576	972	PREDICTED: LRR receptor-like serine/thre	0.821	0.132	0.335	7e-14
357443741	251	Receptor-like protein kinase [Medicago t	0.866	0.541	0.358	3e-13

>gi|147843620|emb|CAN79880.1| hypothetical protein VITISV_031344 [Vitis vinifera]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 95/170 (55%), Gaps = 14/170 (8%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVL-------D 51
           + +LDLS+N+LS E+P+C   W+ L VL   +N+ +G +      +  +Q L       +
Sbjct: 452 LSHLDLSNNRLSGELPNCWGQWKDLIVLNLANNNFSGKIKNSXGLLHQIQTLHLRNNRKE 511

Query: 52  ISYSSILGDIIIVSMIDLQMVQK-----KNSIAIINVVVVGELFKRPIPTKIDQLTMLHA 106
           + Y   LG I  +   + +++ +      + + ++++ +        IP+ I QL  L  
Sbjct: 512 LEYKKTLGLIRSIDFSNNKLIGEIPXEVTDLVELVSLNLSRNNLTGSIPSMIGQLKSLDF 571

Query: 107 LDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASSY 156
           LDLS+NQ  G+IP  +SQ+  L VL LSNN L GKIPSGT+LQ+  AS+Y
Sbjct: 572 LDLSQNQLHGRIPASLSQIADLSVLDLSNNNLLGKIPSGTQLQSFSASTY 621

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490562|ref|XP_003634112.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 101/218 (46%), Gaps = 62/218 (28%)

Query: 1    MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL 58
            +  +D   N+LS  +P       SL VL  +SN  NG +P+ LC ++ +Q+LD+S +++ 
Sbjct: 1026 LHLVDFGRNKLSGNVPAWMGSLSSLIVLNLRSNEFNGNIPLNLCQLKKIQMLDLSSNNLF 1085

Query: 59   G-------DIIIV---------------------SMIDLQMVQKKN-------------S 77
            G       D+I +                     S ID  ++Q K              S
Sbjct: 1086 GTIPKCLNDLIALTQKGSLVIAYNERQFHSGWDFSYIDDTLIQWKGKELEYKKTLGLIRS 1145

Query: 78   IAIINVVVVGEL-------------------FKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
            I   N  ++GE+                       IP+ I QL  L  LDLS+NQ  G+I
Sbjct: 1146 IDFSNNKLIGEIPVEVTDLVELVSLNLSRNNLTGSIPSMIGQLKSLDFLDLSQNQLHGRI 1205

Query: 119  PEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASSY 156
            P  +SQ+  L VL LSNN LSGKIPSGT+LQ+  AS+Y
Sbjct: 1206 PASLSQIADLSVLDLSNNNLSGKIPSGTQLQSFSASTY 1243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493295|ref|XP_003616936.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355518271|gb|AES99894.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 43/192 (22%)

Query: 4    LDLSDNQLSEEIPHCSRYW--QSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG 59
            LDL DN+ +  IP    YW  Q +++L  + N   G +P  LCY++ +++LD+S +++ G
Sbjct: 822  LDLGDNRFTGPIP----YWLGQQMQMLSLRRNQFYGSLPQSLCYLQNIELLDLSENNLSG 877

Query: 60   DI---------------------------IIVSMIDLQMVQK--------KNSIAIINVV 84
             I                           +I+  IDL   Q          N I ++++ 
Sbjct: 878  RIFKCLKNFSAMSQNVSSTSVERQFKNNKLILRSIDLSRNQLIGDIPEEIGNLIELVSLN 937

Query: 85   VVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPS 144
            +        I +KI +LT L +LDLSRN   G IP  ++Q+  + +L+L++N LSG+IP 
Sbjct: 938  LSSNKLTGEISSKIGRLTSLDSLDLSRNHLSGPIPPSLAQIDRVSMLNLADNNLSGRIPI 997

Query: 145  GTKLQTLDASSY 156
            GT+LQ+ DASSY
Sbjct: 998  GTQLQSFDASSY 1009

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147839869|emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 54/211 (25%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLK--------------------------VLKSNHIN 34
           +E LD+S N LS E+P+C  YW+ L                           VL SN   
Sbjct: 522 LESLDISGNLLSGELPNCWMYWRELTRNFDGKFIETLPGDGEIRYTPGLMVLVLHSNKFK 581

Query: 35  GCVPIRLCYVRPVQVLDISYSSILGDI------------------IIVSMIDLQMVQKKN 76
           G +P+ LC++  +Q+LD+   ++ G I                   +  ++ + +   K 
Sbjct: 582 GSIPLELCHLDSLQILDLGNDNLSGTIPRCFATLVMKGVEYEYGNTLGLLVGIDLSSNKF 641

Query: 77  SIAIINVV--VVGELF--------KRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLG 126
           S  I+  +  + G +F        +  IP KI  LT L +LDLS N+  G IP+G++++ 
Sbjct: 642 SGEILEELTGLHGFIFLNLSNNHLQGKIPVKIGALTSLESLDLSMNRLSGVIPQGVAKIS 701

Query: 127 LLGVLSLSNNKLSGKIPSGTKLQTLDASSYM 157
            L  L+LS N  SGKIPSGT++Q     S++
Sbjct: 702 FLSHLNLSYNNFSGKIPSGTQIQGFSPFSFI 732

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834202|emb|CAN64227.1| hypothetical protein VITISV_011552 [Vitis vinifera]

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 100/222 (45%), Gaps = 70/222 (31%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKV-------LKSNHINGCVPIRLCYVRPVQVLDIS 53
           +  LDL  N+LS +IP     W    +       L+SN  NG +P+ LC ++ + +LD+S
Sbjct: 578 LRLLDLGKNKLSGKIPG----WIGGSLSNLIVVNLRSNEFNGSIPLNLCQLKKIHMLDLS 633

Query: 54  YSSILGDI---------------------------IIVSMIDLQMVQKKN---------- 76
            +++ G I                           + +S  D  +VQ K           
Sbjct: 634 SNNLSGTIPKCLNNLSGMAQNGSLVITYEEDLLFLMSLSYYDNTLVQWKGKELEYNKTLG 693

Query: 77  ---SIAIINVVVVGELFKR-------------------PIPTKIDQLTMLHALDLSRNQP 114
              SI   N  ++GE+                      PIP  I QL  L +LDLSRN+ 
Sbjct: 694 LVKSIDFSNNKLIGEIPTEVTDLVELVSLNLSRNYLIGPIPLMIGQLKSLDSLDLSRNRL 753

Query: 115 IGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASSY 156
            G IP  +SQ+  L VL LS+N LSGKIPSGT+LQ+ +AS+Y
Sbjct: 754 HGGIPXSLSQIARLSVLDLSDNILSGKIPSGTQLQSFNASTY 795

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222630747|gb|EEE62879.1| hypothetical protein OsJ_17682 [Oryza sativa Japonica Group]

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 24/174 (13%)

Query: 3   YLDLSDNQLSEEIPHCSRYWQ--------SLKVLKSNHINGCVPIRLCYVRPVQVLDISY 54
           +LDLS NQ S  +P     W         SL  L+SN  +G +P  L  +  +Q LD++ 
Sbjct: 440 FLDLSYNQFSGNLP----LWMGKKFLPILSLLRLRSNMFSGHIPTELTRIDQLQFLDLAE 495

Query: 55  SSILGDIIIVSMIDLQMVQKKNSIAII--NVVVVGE---------LFKRPIPTKIDQLTM 103
           +   G I   S+++L  + + +  +++   V+  G+         L    IP  I QL  
Sbjct: 496 NYFSGSIP-DSLVNLSAMARTSGYSVLLDEVIATGQGAILNFSWNLINGEIPETIGQLKQ 554

Query: 104 LHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASSYM 157
           L +LDLS N+  G+IP  +  L  LG ++LS N LSG+IP G  + + DASSY+
Sbjct: 555 LESLDLSHNELSGEIPSSMQDLNALGTMNLSYNNLSGRIPRGNTMGSYDASSYI 608

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462661|ref|XP_002266475.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 102/222 (45%), Gaps = 70/222 (31%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYW-----QSLKV--LKSNHINGCVPIRLCYVRPVQVLDIS 53
           +  LDL  N+LS +IP     W      +L V  L+SN  NG +P+ LC ++ + +LD+S
Sbjct: 648 LRLLDLGKNKLSGKIPG----WIGGSLSNLIVVNLRSNEFNGSIPLNLCQLKKIHMLDLS 703

Query: 54  YSSILGDI---------------------------IIVSMIDLQMVQKKN---------- 76
            +++ G I                           + +S  D  +VQ K           
Sbjct: 704 SNNLSGTIPKCLNNLSGMAQNGSLVITYEEDLLFLMSLSYYDNTLVQWKGKELEYNKTLG 763

Query: 77  ---SIAIINVVVVGELFKR-------------------PIPTKIDQLTMLHALDLSRNQP 114
              SI   N  ++GE+                      PIP  I QL  L +LDLSRN+ 
Sbjct: 764 LVKSIDFSNNKLIGEIPTEVTDLVELVSLNLSRNYLIGPIPLMIGQLKSLDSLDLSRNRL 823

Query: 115 IGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASSY 156
            G IP  +SQ+  L VL LS+N LSGKIPSGT+LQ+ +AS+Y
Sbjct: 824 HGGIPISLSQIARLSVLDLSDNILSGKIPSGTQLQSFNASTY 865

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147795695|emb|CAN67736.1| hypothetical protein VITISV_022720 [Vitis vinifera]

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 87/188 (46%), Gaps = 59/188 (31%)

Query: 28  LKSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------------------------- 61
           L+SN  NG +P  LC ++ +Q+LD+S +++ G I                          
Sbjct: 395 LRSNEFNGSIPSSLCQLKQIQMLDLSSNNLSGKIPKCLKNLTAMAQKGSPVLSYETIYNL 454

Query: 62  -IIVSMIDLQMVQKKN-------------SIAIINVVVVGEL--------------FKR- 92
            I    +D  +VQ K              SI      ++GE+                R 
Sbjct: 455 SIPYHYVDSTLVQWKGKEQEYKKTLRFIKSIDFSRNXLIGEIPIEVTDLVELVSLNLSRN 514

Query: 93  ----PIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKL 148
                IPT I QL +L  LDLS+NQ  G+IP+ +SQ+  L VL LSNN LSGKIP GT+L
Sbjct: 515 NLIGSIPTTIGQLKLLDVLDLSQNQLNGRIPDTLSQIADLSVLDLSNNTLSGKIPLGTQL 574

Query: 149 QTLDASSY 156
           Q+ DAS+Y
Sbjct: 575 QSFDASTY 582

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490576|ref|XP_003634117.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 87/188 (46%), Gaps = 59/188 (31%)

Query: 28  LKSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------------------------- 61
           L+SN  NG +P  LC ++ +Q+LD+S +++ G I                          
Sbjct: 683 LRSNEFNGSIPSSLCQLKQIQMLDLSSNNLSGKIPKCLKNLTAMAQKGSPVLSYETIYNL 742

Query: 62  -IIVSMIDLQMVQKKN-------------SIAIINVVVVGEL--------------FKR- 92
            I    +D  +VQ K              SI      ++GE+                R 
Sbjct: 743 SIPYHYVDSTLVQWKGKEQEYKKTLRFIKSIDFSRNQLIGEIPIEVTDLVELVSLNLSRN 802

Query: 93  ----PIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKL 148
                IPT I QL +L  LDLS+NQ  G+IP+ +SQ+  L VL LSNN LSGKIP GT+L
Sbjct: 803 NLIGSIPTTIGQLKLLDVLDLSQNQLNGRIPDTLSQIADLSVLDLSNNTLSGKIPLGTQL 862

Query: 149 QTLDASSY 156
           Q+ DAS+Y
Sbjct: 863 QSFDASTY 870

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443741|ref|XP_003592148.1| Receptor-like protein kinase [Medicago truncatula] gi|355481196|gb|AES62399.1| Receptor-like protein kinase [Medicago truncatula]

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 83/156 (53%), Gaps = 20/156 (12%)

Query: 4   LDLSDNQLSEEIPHC-SRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD 60
           LDL +N+    +P       Q+L++L  +SN+  G +P  LCY+  +QVLD+S ++I G 
Sbjct: 71  LDLGENKFHGPLPSWIGDSLQNLEILSLRSNNFYGSLPSNLCYLTKLQVLDLSLNNISGR 130

Query: 61  IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPE 120
           I      D +   K               F + I    + LT    LDLSRN   GKIP 
Sbjct: 131 IPTCVDQDFKNADK---------------FLKTIDLSSNHLTEF--LDLSRNHLSGKIPS 173

Query: 121 GISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASSY 156
            ++ +  L +L+ SNN+L G+IP GT+LQT +ASS+
Sbjct: 174 SLAHIDRLTMLNFSNNELYGEIPIGTQLQTFNASSF 209

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
TAIR|locus:2169975	993	HSL2 "HAESA-like 2" [Arabidops	0.732	0.115	0.296	6.3e-07
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.675	0.093	0.354	7.4e-07
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.694	0.111	0.305	2.1e-06
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.515	0.086	0.294	2.2e-06
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.363	0.064	0.327	2.9e-06
TAIR|locus:2206245	720	CLV2 "clavata 2" [Arabidopsis	0.681	0.148	0.313	5e-06
TAIR|locus:2007918	1088	PEPR2 "PEP1 receptor 2" [Arabi	0.681	0.098	0.313	5e-06
TAIR|locus:2094613	784	RLP38 "receptor like protein 3	0.363	0.072	0.349	5.2e-06
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.700	0.093	0.305	7e-06
TAIR|locus:2052367	462	RLP29 "receptor like protein 2	0.904	0.307	0.277	7.2e-06

TAIR|locus:2169975 HSL2 "HAESA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 40/135 (29%), Positives = 76/135 (56%)

Query:     4 LDLSDN-QLSEEIPHC---SRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILG 59
             L+L++N QL   IP     +R+   L++  +N+ +G +P++LC +R ++V+D+S +S LG
Sbjct:   439 LELANNNQLQGSIPPSISKARHLSQLEI-SANNFSGVIPVKLCDLRDLRVIDLSRNSFLG 497

Query:    60 DI--IIVSMIDLQMVQKKNSI-------AIINVVVVGEL------FKRPIPTKIDQLTML 104
              I   I  + +L+ V+ + ++       ++ +   + EL       +  IP ++  L +L
Sbjct:   498 SIPSCINKLKNLERVEMQENMLDGEIPSSVSSCTELTELNLSNNRLRGGIPPELGDLPVL 557

Query:   105 HALDLSRNQPIGKIP 119
             + LDLS NQ  G+IP
Sbjct:   558 NYLDLSNNQLTGEIP 572

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 7.4e-07, P = 7.4e-07
 Identities = 45/127 (35%), Positives = 66/127 (51%)

Query:     1 MEYLDLSDNQLSEEIP----HCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSS 56
             + +LDLS+N LS  +P    +C R  Q L  L +N + G +P+ L  +  +QVLD+S + 
Sbjct:   493 LSFLDLSENNLSGPVPLEISNC-RQLQMLN-LSNNTLQGYLPLSLSSLTKLQVLDVSSND 550

Query:    57 ILGDI--IIVSMIDL-QMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQ 113
             + G I   +  +I L +++  KNS    N    GE     IP+ +   T L  LDLS N 
Sbjct:   551 LTGKIPDSLGHLISLNRLILSKNSF---N----GE-----IPSSLGHCTNLQLLDLSSNN 598

Query:   114 PIGKIPE 120
               G IPE
Sbjct:   599 ISGTIPE 605

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 36/118 (30%), Positives = 63/118 (53%)

Query:     4 LDLSDNQLSEEIPHCSRYWQSLK--VLKSNHINGCVPIRLCYVRPVQVLDISYSSILGDI 61
             LD+S N LS  IP        L+  +L  NH++G VP  L     +++LD+S++++ G I
Sbjct:   374 LDVSRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTI 433

Query:    62 IIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP 119
              +  + +L     +N    +N+         PIP ++ ++ M+ ++DLS N+  GKIP
Sbjct:   434 PVEVVSNL-----RNLKLYLNLS--SNHLSGPIPLELSKMDMVLSVDLSSNELSGKIP 484

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
 Identities = 25/85 (29%), Positives = 47/85 (55%)

Query:     1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL 58
             ++ LDL +N+LS  IP      QS+ +L  K N++ G +P  LC +  V++LD+S + + 
Sbjct:   606 VQILDLRNNKLSGSIPQFDDT-QSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLN 664

Query:    59 GDIIIVSMIDLQMVQKKNSIAIINV 83
             G +I   + +L   + +     +N+
Sbjct:   665 G-VIPSCLSNLSFGRLQEDAMALNI 688

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 89 (36.4 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query:     4 LDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGDI 61
             +DLS N  +  IP C R  + L  L++N++ G +P  LC    ++ LD+S++ + G +
Sbjct:   512 IDLSYNNFTGPIPPCLRNLE-LVYLRNNNLEGSIPDALCDGASLRTLDVSHNRLTGKL 568

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2206245 CLV2 "clavata 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 5.0e-06, P = 5.0e-06
 Identities = 37/118 (31%), Positives = 66/118 (55%)

Query:     4 LDLSDNQLSEEIPHCSRYWQSLKVLKSNH--INGCVPIRLCYVRPVQVLDISYSSILGDI 61
             LDLS N  S +IP      +SL+ L+ +H  + G +P R+  +  +QV+D+S++++ G I
Sbjct:   320 LDLSHNSFSGDIPLRITELKSLQALRLSHNLLTGDIPARIGNLTYLQVIDLSHNALTGSI 379

Query:    62 IIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP 119
              +  +   Q++    ++ I N  + GE+  +P   ++D L  L  LD+S N   G+IP
Sbjct:   380 PLNIVGCFQLL----ALMISNNNLSGEI--QP---ELDALDSLKILDISNNHISGEIP 428

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=TAS

GO:0016020 "membrane" evidence=ISS

GO:0048507 "meristem development" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=IMP;RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0009653 "anatomical structure morphogenesis" evidence=IMP

GO:0040008 "regulation of growth" evidence=IMP

TAIR|locus:2007918 PEPR2 "PEP1 receptor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 5.0e-06, P = 5.0e-06
 Identities = 37/118 (31%), Positives = 58/118 (49%)

Query:     4 LDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSILGDI 61
             +DLSDN+LS  IP       SL+ LK   N + G +P  L  ++ +Q L++ ++ + G+I
Sbjct:   297 IDLSDNRLSGNIPQELGNCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEI 356

Query:    62 IIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP 119
                  I +  +Q    + + N  + GEL     P ++ QL  L  L L  N   G IP
Sbjct:   357 ----PIGIWKIQSLTQMLVYNNTLTGEL-----PVEVTQLKHLKKLTLFNNGFYGDIP 405

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042277 "peptide binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2094613 RLP38 "receptor like protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 87 (35.7 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
 Identities = 22/63 (34%), Positives = 39/63 (61%)

Query:     3 YLDLSDNQLSEEIPHC---SRYWQSLKVLKSNHINGCVPIRLCYVRPV-QVLDISYSSIL 58
             +LDLSDN+ +  IP C   S  + +L  L++N ++G +P  LC    + + LD+SY++ +
Sbjct:   403 FLDLSDNRFTGSIPQCLKNSTDFNTLN-LRNNSLSGFLP-ELCMDSTMLRSLDVSYNNFV 460

Query:    59 GDI 61
             G +
Sbjct:   461 GKL 463

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 37/121 (30%), Positives = 63/121 (52%)

Query:     1 MEYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSIL 58
             + +L LS+N L   I     + +SL+VL   SN+  G  P  +  +R + VL + +++I 
Sbjct:   314 LTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNIS 373

Query:    59 GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
             G++      DL ++    +++  + ++ G     PIP+ I   T L  LDLS NQ  G+I
Sbjct:   374 GEL----PADLGLLTNLRNLSAHDNLLTG-----PIPSSISNCTGLKLLDLSHNQMTGEI 424

Query:   119 P 119
             P
Sbjct:   425 P 425

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2052367 RLP29 "receptor like protein 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 7.2e-06, P = 7.2e-06
 Identities = 43/155 (27%), Positives = 66/155 (42%)

Query:     1 MEYLDLSDN-QLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSI 57
             ++ L L  N  LS +IP      +SL++L    N + G +P  +  ++ +  LD+SY+ +
Sbjct:   142 LQQLSLRSNPSLSGQIPPRISSLKSLQILTLSQNRLTGDIPPAIFSLKSLVHLDLSYNKL 201

Query:    58 LGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK 117
              G I       LQ+    N   ++ + +        IP  I QL ML  LDLS N   G+
Sbjct:   202 TGKI------PLQLGNLNN---LVGLDLSYNSLTGTIPPTISQLGMLQKLDLSSNSLFGR 252

Query:   118 IPEXXXXXXXXXXXXXXXXXXXXXXPSG-TKLQTL 151
             IPE                      P G + LQ+L
Sbjct:   253 IPEGVEKLRSLSFMALSNNKLKGAFPKGISNLQSL 287

GO:0005886 "plasma membrane" evidence=ISM

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006450001 SubName- Full=Chromosome undetermined scaffold_171, whole genome shotgun sequence; (958 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	157
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-05

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.1 bits (156), Expect = 1e-12
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 11/147 (7%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLK--VLKSNHINGCVPIRLCYVRPVQVLDISYSSIL 58
           +E+L L+ NQL  +IP      +SLK   L  N+++G +P  +  +  +  LD+ Y+++ 
Sbjct: 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249

Query: 59  GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
           G I   S+ +L+ +Q         + +       PIP  I  L  L +LDLS N   G+I
Sbjct: 250 GPIP-SSLGNLKNLQY--------LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 119 PEGISQLGLLGVLSLSNNKLSGKIPSG 145
           PE + QL  L +L L +N  +GKIP  
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVA 327

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.2 bits (133), Expect = 1e-09
 Identities = 45/142 (31%), Positives = 62/142 (43%), Gaps = 35/142 (24%)

Query: 4   LDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSILGDI 61
           LDLSDN LS EIP      Q+L++L   SN+  G +P+ L  +  +QVL +  +   G+I
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348

Query: 62  IIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEG 121
                                            P  + +   L  LDLS N   G+IPEG
Sbjct: 349 ---------------------------------PKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Query: 122 ISQLGLLGVLSLSNNKLSGKIP 143
           +   G L  L L +N L G+IP
Sbjct: 376 LCSSGNLFKLILFSNSLEGEIP 397

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 16/158 (10%)

Query: 4   LDLSDNQLSEEIPHCSRYWQSLKV--LKSNHINGCVPIRLCYVRPVQVLDISYSSILGDI 61
           L L  N L  EIP      +SL+   L+ N  +G +P     +  V  LDIS +++ G I
Sbjct: 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444

Query: 62  --IIVSMIDLQMV------------QKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHAL 107
                 M  LQM+                S  + N+ +    F   +P K+  L+ L  L
Sbjct: 445 NSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQL 504

Query: 108 DLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG 145
            LS N+  G+IP+ +S    L  L LS+N+LSG+IP+ 
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 34/144 (23%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKV-LKSNHINGCVPIRLCYVRPVQVLDISYSSILG 59
           ++ L L+ N+    +P      +   + L  N  +G VP +L  +  +  L +S + + G
Sbjct: 454 LQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513

Query: 60  DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP 119
           +I                                 P ++     L +LDLS NQ  G+IP
Sbjct: 514 EI---------------------------------PDELSSCKKLVSLDLSHNQLSGQIP 540

Query: 120 EGISQLGLLGVLSLSNNKLSGKIP 143
              S++ +L  L LS N+LSG+IP
Sbjct: 541 ASFSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 5e-08
 Identities = 23/51 (45%), Positives = 32/51 (62%)

Query: 94  IPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPS 144
           IP  +  +T L  LDLS N   G IPE + QL  L +L+L+ N LSG++P+
Sbjct: 458 IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 14/146 (9%)

Query: 1   MEYLDLSDNQLSEEIPH-CSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILG 59
           ++ ++LS+NQLS  IP        SL+ L  ++ N    I    +  ++ LD+S + + G
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG 154

Query: 60  DII--IVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK 117
           +I   I S   L+++    +      V+VG+     IP  +  LT L  L L+ NQ +G+
Sbjct: 155 EIPNDIGSFSSLKVLDLGGN------VLVGK-----IPNSLTNLTSLEFLTLASNQLVGQ 203

Query: 118 IPEGISQLGLLGVLSLSNNKLSGKIP 143
           IP  + Q+  L  + L  N LSG+IP
Sbjct: 204 IPRELGQMKSLKWIYLGYNNLSGEIP 229

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 76  NSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGL-LGVLSLS 134
           NS  ++++ + G+     I + I +L  +  ++LS NQ  G IP+ I      L  L+LS
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 135 NNKLSGKIPSGT--KLQTLDASSYM 157
           NN  +G IP G+   L+TLD S+ M
Sbjct: 127 NNNFTGSIPRGSIPNLETLDLSNNM 151

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 94  IPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQ 149
           IP  I +L  L +++LS N   G IP  +  +  L VL LS N  +G IP      T L+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 150 TL 151
            L
Sbjct: 494 IL 495

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.78
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.76
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.57
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.49
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.48
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.48
PLN03150	623	hypothetical protein; Provisional	99.36
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.34
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.34
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.3
PLN03150	623	hypothetical protein; Provisional	99.25
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.18
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.14
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.05
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.03
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.03
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.01
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.0
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.98
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.96
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.9
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.88
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.88
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.68
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.51
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.46
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.43
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.3
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.25
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.23
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.22
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.03
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.97
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.95
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.94
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.92
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.87
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.86
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.82
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.64
PRK15386	426	type III secretion protein GogB; Provisional	97.54
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.47
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.45
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.43
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.29
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.97
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.72
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.62
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.46
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.36
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.29
PRK15386	426	type III secretion protein GogB; Provisional	96.27
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.21
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.06
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.8
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.09
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.56
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.28
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.72
KOG2982	418	consensus Uncharacterized conserved protein [Funct	93.48
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	91.58
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.23
smart00370	26	LRR Leucine-rich repeats, outliers.	91.23
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.02
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.63
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.36
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	87.33
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	84.7
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	83.71
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.22

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.78  E-value=7.3e-19  Score=145.52  Aligned_cols=155  Identities=28%  Similarity=0.415  Sum_probs=95.3

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCC------------------------CCCCEEEccCC
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYV------------------------RPVQVLDISYS   55 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l------------------------~~L~~L~l~~n   55 (157)
                      +.+++++|.+.+.+|..+..+++|+.|  .+|.+.+..|..+..+                        ++|++|++++|
T Consensus       383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  462 (968)
T PLN00113        383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN  462 (968)
T ss_pred             CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCc
Confidence            445555555555555555555555555  4444444444444444                        44455555555


Q ss_pred             cceeecc------eeeeeecccccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChh
Q 039394           56 SILGDII------IVSMIDLQMVQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEG  121 (157)
Q Consensus        56 ~~~~~~~------~l~~l~l~~n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~  121 (157)
                      .+.+.+|      +++.|++++|.+.+..  .+..+..+..+      +.+.+|..+..+++|++|++++|.+.+.+|..
T Consensus       463 ~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  542 (968)
T PLN00113        463 KFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS  542 (968)
T ss_pred             eeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence            4444433      4566666666665443  33333334333      55667777777888888888888888788888


Q ss_pred             hhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394          122 ISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY  156 (157)
Q Consensus       122 ~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~  156 (157)
                      +..+++|+.|++++|.++|.+|..    +.++.++++.+
T Consensus       543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N  581 (968)
T PLN00113        543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN  581 (968)
T ss_pred             HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence            888888888888888888777765    55667776654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.76  E-value=1.4e-18  Score=143.92  Aligned_cols=143  Identities=36%  Similarity=0.484  Sum_probs=71.6

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~   71 (157)
                      |++|++++|.+.+.+|..+..+++|++|  .+|.+.+..|..++.+++|++|++++|.+.+.+|       +++.|++++
T Consensus       142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  221 (968)
T PLN00113        142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY  221 (968)
T ss_pred             CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence            3455555555555555555556666665  4555555555555556666666666555544333       455555555


Q ss_pred             ccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394           72 VQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP  143 (157)
Q Consensus        72 n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  143 (157)
                      |.+.+..  .+..+..++++      +.+.+|..++.+++|+.|++++|++.+.+|..+..+++|+.|++++|.+.+.+|
T Consensus       222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  301 (968)
T PLN00113        222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP  301 (968)
T ss_pred             CccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence            5554322  23333333333      333444444444445555555444444444444444444444444444444444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.57  E-value=5e-16  Score=118.95  Aligned_cols=140  Identities=21%  Similarity=0.135  Sum_probs=96.1

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-------ecceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-------DIIIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-------~~~~l~~l~l~~   71 (157)
                      +++|+|+.|+++..-..+|..+.+|.+|  +.|+++...+..|+++++|+.|++.+|+|.-       .+|+++.+.+..
T Consensus       175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqr  254 (873)
T KOG4194|consen  175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQR  254 (873)
T ss_pred             ceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhh
Confidence            4678888888886666778888888888  8888887777788889999999999998752       345777777777


Q ss_pred             ccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394           72 VQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus        72 n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                      |.+....  .|-.+..++++      +...-..++..++.|+.|++++|.+...-++.+.-+++|++|++++|.|..
T Consensus       255 N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~  331 (873)
T KOG4194|consen  255 NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR  331 (873)
T ss_pred             cCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence            7777654  44444444444      333334455566666666666666666556666666666666666666653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=1.5e-16  Score=105.40  Aligned_cols=141  Identities=23%  Similarity=0.384  Sum_probs=110.6

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcce------eecceeeeeeccccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL------GDIIIVSMIDLQMVQ   73 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~------~~~~~l~~l~l~~n~   73 (157)
                      +.|.||+|.++ .+|+.++.+.+|+.|  .+|.++ .+|..++++++|++|+++.|++.      |.+|.++.+|++.|.
T Consensus        36 TrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynn  113 (264)
T KOG0617|consen   36 TRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNN  113 (264)
T ss_pred             hhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccc
Confidence            34678888888 677788888888888  566666 67888888888888888888764      566788888888887


Q ss_pred             ccceE---EEceeeeecccc-----ccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC
Q 039394           74 KKNSI---AIINVVVVGELF-----KRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG  145 (157)
Q Consensus        74 l~~~~---~~~~~~~l~~~~-----~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~  145 (157)
                      +..-.   .+..+..++.+.     -..+|..++++++|+.|.+++|.+. .+|.+++.+..|++|++.+|.++...|+.
T Consensus       114 l~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  114 LNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             cccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhh
Confidence            76533   555555555441     1267889999999999999999987 89999999999999999999998655544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.49  E-value=9e-16  Score=101.77  Aligned_cols=103  Identities=19%  Similarity=0.318  Sum_probs=73.1

Q ss_pred             hhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee------ecceeeeeecccccccceEEEceeeeecccc
Q 039394           19 SRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG------DIIIVSMIDLQMVQKKNSIAIINVVVVGELF   90 (157)
Q Consensus        19 ~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~------~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~   90 (157)
                      +..+.+++.|  +-|.++ .+|+.+..+.+|+.|++.+|+++.      .+|.++.++++.|++.               
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~---------------   92 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN---------------   92 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh---------------
Confidence            4556677777  677777 678889999999999999999873      3448888999999998               


Q ss_pred             ccccccccccccCCCEEecCCCccCC-CCChhhhcCCCCCeEEccCCcce
Q 039394           91 KRPIPTKIDQLTMLHALDLSRNQPIG-KIPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        91 ~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                        .+|..|+.++.|+.||+.+|++.. .+|..|..+..|+.|++++|.+.
T Consensus        93 --~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe  140 (264)
T KOG0617|consen   93 --ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE  140 (264)
T ss_pred             --cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc
Confidence              566666666666666666666543 34555555555555555555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.48  E-value=9.7e-15  Score=112.04  Aligned_cols=157  Identities=22%  Similarity=0.139  Sum_probs=113.4

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-------ecceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-------DIIIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-------~~~~l~~l~l~~   71 (157)
                      |+.||||.|.++...-++|..-++++.|  +.|+++..--+.|..+.+|..|.+++|+++.       .+|.|+.|++..
T Consensus       151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR  230 (873)
T ss_pred             hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence            3556677776663333455555667777  6666665555667777777777777777652       234677777877


Q ss_pred             ccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394           72 VQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP  143 (157)
Q Consensus        72 n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  143 (157)
                      |++.-..  .|..+.+++.+      +..---..|..+..+++|++..|+++..-..++.+++.|++|++|+|.|...-+
T Consensus       231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~  310 (873)
T KOG4194|consen  231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI  310 (873)
T ss_pred             cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence            7776543  66666666666      222223457889999999999999987778889999999999999999998777


Q ss_pred             CC----CCcccccCCCCC
Q 039394          144 SG----TKLQTLDASSYM  157 (157)
Q Consensus       144 ~~----~~l~~l~~~~~~  157 (157)
                      +.    ++++.||+++++
T Consensus       311 d~WsftqkL~~LdLs~N~  328 (873)
T KOG4194|consen  311 DSWSFTQKLKELDLSSNR  328 (873)
T ss_pred             chhhhcccceeEeccccc
Confidence            76    999999998863

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.48  E-value=3.5e-15  Score=115.66  Aligned_cols=155  Identities=27%  Similarity=0.290  Sum_probs=119.4

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc------eeeeeecccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII------IVSMIDLQMV   72 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------~l~~l~l~~n   72 (157)
                      |+.||||+|++. +.|..+..-+++-+|  +.|++...+-+-+-+++-|-+||+|.|++....|      .+++|.+++|
T Consensus       105 Lt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  105 LTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN  183 (1255)
T ss_pred             ceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence            567899999998 888888888888888  7777775544556678888899999998874333      7888899999


Q ss_pred             cccceE--EEceeeeeccc-------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394           73 QKKNSI--AIINVVVVGEL-------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP  143 (157)
Q Consensus        73 ~l~~~~--~~~~~~~l~~~-------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  143 (157)
                      ++...-  .+..++.+..+       ....+|.++..+.+|..+|+++|.+. .+|+++..+++|+.|++|+|.|+..-.
T Consensus       184 PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~  262 (1255)
T KOG0444|consen  184 PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM  262 (1255)
T ss_pred             hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec
Confidence            887543  44455555544       23378999999999999999999977 899999999999999999999875444


Q ss_pred             CC---CCcccccCCCCC
Q 039394          144 SG---TKLQTLDASSYM  157 (157)
Q Consensus       144 ~~---~~l~~l~~~~~~  157 (157)
                      ..   ..+.+|+++-+|
T Consensus       263 ~~~~W~~lEtLNlSrNQ  279 (1255)
T KOG0444|consen  263 TEGEWENLETLNLSRNQ  279 (1255)
T ss_pred             cHHHHhhhhhhccccch
Confidence            33   666677766553

>PLN03150 hypothetical protein; Provisional

Probab=99.36  E-value=1.7e-12  Score=103.35  Aligned_cols=104  Identities=29%  Similarity=0.428  Sum_probs=64.4

Q ss_pred             EEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceEEE
Q 039394            3 YLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSIAI   80 (157)
Q Consensus         3 ~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~~~   80 (157)
                      .|+|++|.+.+.+|..+..+++|+.|  ..|.+.+.+|..++.+++|+.|++++|.+.+                     
T Consensus       422 ~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg---------------------  480 (623)
T PLN03150        422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG---------------------  480 (623)
T ss_pred             EEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC---------------------
Confidence            34555555555555555555555555  4455555555555555555555555555443                     


Q ss_pred             ceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcC-CCCCeEEccCCcce
Q 039394           81 INVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQL-GLLGVLSLSNNKLS  139 (157)
Q Consensus        81 ~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l-~~L~~L~ls~N~l~  139 (157)
                                  .+|..++.+++|+.|++++|.+.+.+|..+... .++..+++++|...
T Consensus       481 ------------~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        481 ------------SIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             ------------CCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence                        567777888888888888888888888777653 35567777777643

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.34  E-value=1.4e-13  Score=101.62  Aligned_cols=135  Identities=22%  Similarity=0.284  Sum_probs=106.2

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeecccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQMV   72 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~n   72 (157)
                      +.++++.|++. ++|..+..++.+.+.  ..|...+.+|..++.++++..|++++|-+. .+|       .++.+++++|
T Consensus       391 t~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~N  468 (565)
T KOG0472|consen  391 TSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFN  468 (565)
T ss_pred             EEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccc
Confidence            35789999999 889888877777766  555555588899999999999999998775 344       7889999999


Q ss_pred             cccceEEEceeee-eccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394           73 QKKNSIAIINVVV-VGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        73 ~l~~~~~~~~~~~-l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                      +|...+++..... ++.+      +....|..+..+.+|..||+..|.+. .+|+.+++|+++++|++.+|+|.
T Consensus       469 rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  469 RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            9987662221111 1111      33344556899999999999999977 89999999999999999999998

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.34  E-value=2.2e-14  Score=105.84  Aligned_cols=139  Identities=24%  Similarity=0.246  Sum_probs=97.6

Q ss_pred             EECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc------eeeeeeccccccc
Q 039394            4 LDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII------IVSMIDLQMVQKK   75 (157)
Q Consensus         4 L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------~l~~l~l~~n~l~   75 (157)
                      ++..+|+++ ..|+.+..+.++..+  .+|.+.. .|+..-.|++|+++|+..|.+...-|      ++..+++..|++.
T Consensus       142 l~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~  219 (565)
T KOG0472|consen  142 LDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR  219 (565)
T ss_pred             hhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc
Confidence            344444444 344444444444444  4444443 33333347777777777776652222      6777888999998


Q ss_pred             ceEEEceeeeeccc-----cccccccccc-cccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC
Q 039394           76 NSIAIINVVVVGEL-----FKRPIPTKID-QLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG  145 (157)
Q Consensus        76 ~~~~~~~~~~l~~~-----~~~~~p~~~~-~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~  145 (157)
                      ..++|..|..+.++     ....+|.+.. ++.++..||+++|++. ++|+++..+++|..||+|+|.+++-.++-
T Consensus       220 ~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sL  294 (565)
T KOG0472|consen  220 FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSL  294 (565)
T ss_pred             cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCccc
Confidence            88888888888877     3336777765 8899999999999976 99999999999999999999999765544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.30  E-value=1.3e-13  Score=107.19  Aligned_cols=138  Identities=24%  Similarity=0.307  Sum_probs=85.4

Q ss_pred             ccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee------cceeeeeecccccccceE-EEceee
Q 039394           14 EIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD------IIIVSMIDLQMVQKKNSI-AIINVV   84 (157)
Q Consensus        14 ~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~------~~~l~~l~l~~n~l~~~~-~~~~~~   84 (157)
                      .+|.++..+.+|..+  +.|.+. .+|+++..+++|+-|++|+|+|+..      ...+++|+++.|.+...+ .+++++
T Consensus       213 N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~  291 (1255)
T KOG0444|consen  213 NIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLT  291 (1255)
T ss_pred             cCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhH
Confidence            356666666666666  556655 6788888888888888888887632      227788888888888777 666666


Q ss_pred             eeccc-------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CCcccccC
Q 039394           85 VVGEL-------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDA  153 (157)
Q Consensus        85 ~l~~~-------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~  153 (157)
                      .++.+       --..+|..++++.+|+.+..++|++. -+|+.++.|..|+.|.++.|.+- .+|+.    +.+++||+
T Consensus       292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDl  369 (1255)
T KOG0444|consen  292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDL  369 (1255)
T ss_pred             HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeec
Confidence            65555       11245666666666665555555544 45555555555555555555543 23333    44444444


Q ss_pred             C
Q 039394          154 S  154 (157)
Q Consensus       154 ~  154 (157)
                      .
T Consensus       370 r  370 (1255)
T KOG0444|consen  370 R  370 (1255)
T ss_pred             c
Confidence            3

>PLN03150 hypothetical protein; Provisional

Probab=99.25  E-value=1.2e-11  Score=98.51  Aligned_cols=83  Identities=34%  Similarity=0.505  Sum_probs=69.0

Q ss_pred             CCEEEccCCcceeecc-------eeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCC
Q 039394           47 VQVLDISYSSILGDII-------IVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP  119 (157)
Q Consensus        47 L~~L~l~~n~~~~~~~-------~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  119 (157)
                      ++.|++++|.+.|.+|       +|+.|++++|.+.+                .+|..+..+++|+.|++++|++.+.+|
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g----------------~iP~~~~~l~~L~~LdLs~N~lsg~iP  483 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG----------------NIPPSLGSITSLEVLDLSYNSFNGSIP  483 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC----------------cCChHHhCCCCCCEEECCCCCCCCCCc
Confidence            4556666666665544       56666666666653                688899999999999999999999999


Q ss_pred             hhhhcCCCCCeEEccCCcceecCCCC
Q 039394          120 EGISQLGLLGVLSLSNNKLSGKIPSG  145 (157)
Q Consensus       120 ~~~~~l~~L~~L~ls~N~l~~~~p~~  145 (157)
                      +.++.+++|+.|++++|.++|.+|..
T Consensus       484 ~~l~~L~~L~~L~Ls~N~l~g~iP~~  509 (623)
T PLN03150        484 ESLGQLTSLRILNLNGNSLSGRVPAA  509 (623)
T ss_pred             hHHhcCCCCCEEECcCCcccccCChH
Confidence            99999999999999999999999986

>PLN03210 Resistant to P

Probab=99.18  E-value=1.3e-10  Score=98.33  Aligned_cols=54  Identities=30%  Similarity=0.356  Sum_probs=32.9

Q ss_pred             ccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC---CCcccccCC
Q 039394          101 LTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG---TKLQTLDAS  154 (157)
Q Consensus       101 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~---~~l~~l~~~  154 (157)
                      +++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..   +.++.|+++
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls  833 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLS  833 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECC
Confidence            346667777776666667777777777777777766444445543   444445444

syringae 6; Provisional

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.14  E-value=4e-12  Score=91.30  Aligned_cols=120  Identities=28%  Similarity=0.301  Sum_probs=96.8

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee------cceeeeeecccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD------IIIVSMIDLQMV   72 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~------~~~l~~l~l~~n   72 (157)
                      |+++|||+|.++ .+.+++.-.|.++.|  +.|.+.. + +.+..+++|++||+|+|.++..      +.+.+.|.++.|
T Consensus       286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence            567899999998 888888888999999  7888773 3 3488999999999999987632      338889999999


Q ss_pred             cccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCC-CChhhhcCCCCCeEEccCCcceec
Q 039394           73 QKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK-IPEGISQLGLLGVLSLSNNKLSGK  141 (157)
Q Consensus        73 ~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~  141 (157)
                      .+.+                  -..++++-+|..||+++|++..- --..++.++.|..+.+.+|++.+.
T Consensus       363 ~iE~------------------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  363 KIET------------------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hHhh------------------hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            8863                  34577888999999999998631 123478999999999999999754

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.05  E-value=3.3e-10  Score=91.57  Aligned_cols=133  Identities=20%  Similarity=0.260  Sum_probs=76.1

Q ss_pred             CcEEECcCCccccccCcchhcc-----------------cccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYW-----------------QSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI   61 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l-----------------~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~   61 (157)
                      |++|++++|.+++ +|.....+                 .+|+.|  .+|.+.+ +|..   .++|+.|++++|.+.+ +
T Consensus       304 L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-L  377 (788)
T PRK15387        304 LQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-L  377 (788)
T ss_pred             cceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-C
Confidence            5677777777774 33321111                 244555  4555542 3332   2344455555555542 3


Q ss_pred             c----eeeeeecccccccceE----EEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEc
Q 039394           62 I----IVSMIDLQMVQKKNSI----AIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSL  133 (157)
Q Consensus        62 ~----~l~~l~l~~n~l~~~~----~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l  133 (157)
                      |    +++.|++++|.+...+    .+..+....+.+. .+|..   ..+|+.|++++|++. .+|+.+..+++++.+++
T Consensus       378 P~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        378 PALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  452 (788)
T ss_pred             cccccccceEEecCCcccCCCCcccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence            3    5556666666665443    1111111111122 34542   246778899999977 78999999999999999


Q ss_pred             cCCcceecCCC
Q 039394          134 SNNKLSGKIPS  144 (157)
Q Consensus       134 s~N~l~~~~p~  144 (157)
                      ++|++++.+|.
T Consensus       453 s~N~Ls~~~~~  463 (788)
T PRK15387        453 EGNPLSERTLQ  463 (788)
T ss_pred             CCCCCCchHHH
Confidence            99999887554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.03  E-value=6.3e-10  Score=90.00  Aligned_cols=142  Identities=24%  Similarity=0.342  Sum_probs=71.2

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-----eeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-----IVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-----~l~~l~l~~n~   73 (157)
                      |++|++++|.++ .+|..+.  .+|+.|  ..|.+. .+|..+.  ++|+.|++++|.+.. +|     +|+.|++++|.
T Consensus       222 L~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~~sL~~L~Ls~N~  294 (754)
T PRK15370        222 IKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLPEELRYLSVYDNS  294 (754)
T ss_pred             CCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccCCCCcEEECCCCc
Confidence            467777777777 4555443  345555  455554 4444432  356666666665542 22     45566666665


Q ss_pred             ccceE-EEc----ee---------------eeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCC
Q 039394           74 KKNSI-AII----NV---------------VVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGL  127 (157)
Q Consensus        74 l~~~~-~~~----~~---------------~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~  127 (157)
                      +...+ .+.    .+               ..++.+      +. .+|..+  .++|+.|++++|++. .+|..+.  +.
T Consensus       295 Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~  368 (754)
T PRK15370        295 IRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASL--PPELQVLDVSKNQIT-VLPETLP--PT  368 (754)
T ss_pred             cccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhh--cCcccEEECCCCCCC-cCChhhc--CC
Confidence            55433 110    00               011111      11 133222  246666666666655 4555442  46


Q ss_pred             CCeEEccCCcceecCCCC--CCcccccCCCC
Q 039394          128 LGVLSLSNNKLSGKIPSG--TKLQTLDASSY  156 (157)
Q Consensus       128 L~~L~ls~N~l~~~~p~~--~~l~~l~~~~~  156 (157)
                      |+.|++++|.+. .+|..  ..++.|+++.+
T Consensus       369 L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~N  398 (754)
T PRK15370        369 ITTLDVSRNALT-NLPENLPAALQIMQASRN  398 (754)
T ss_pred             cCEEECCCCcCC-CCCHhHHHHHHHHhhccC
Confidence            667777777666 33433  34555555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.03  E-value=1.5e-11  Score=94.40  Aligned_cols=120  Identities=28%  Similarity=0.369  Sum_probs=75.0

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc------eeeeeeccccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII------IVSMIDLQMVQ   73 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------~l~~l~l~~n~   73 (157)
                      ++++|+.|+++ .+|..++.++ |+.|  .+|.+. .+|+.++....|.++|.+.|.+....+      +++.+.+..|.
T Consensus       124 t~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~  200 (722)
T KOG0532|consen  124 TFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH  200 (722)
T ss_pred             HHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh
Confidence            34455555555 4444444444 4444  333333 445555555555555555555432111      44444555555


Q ss_pred             ccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394           74 KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP  143 (157)
Q Consensus        74 l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  143 (157)
                      +.                 .+|.++..+ .|..||+++|++. .+|-.|..|+.|++|-|.+|++..+..
T Consensus       201 l~-----------------~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPA  251 (722)
T KOG0532|consen  201 LE-----------------DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPA  251 (722)
T ss_pred             hh-----------------hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChH
Confidence            54                 578888744 5889999999976 899999999999999999999875433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.01  E-value=2e-11  Score=97.93  Aligned_cols=114  Identities=23%  Similarity=0.218  Sum_probs=63.9

Q ss_pred             ccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc--------eeeeeecccccccceE-EEceeeeeccc-
Q 039394           22 WQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII--------IVSMIDLQMVQKKNSI-AIINVVVVGEL-   89 (157)
Q Consensus        22 l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~--------~l~~l~l~~n~l~~~~-~~~~~~~l~~~-   89 (157)
                      +..|+.|  .+|+++...-+.+..+.+|++|++++|++. .+|        .++.|++++|++...+ .+..+..++.+ 
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLR  436 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHh
Confidence            4445555  566666555455666666666666666654 233        5556666666666544 33333333333 


Q ss_pred             ----cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCc
Q 039394           90 ----FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNK  137 (157)
Q Consensus        90 ----~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~  137 (157)
                          ....+| ++..+++|+.+|++.|.+.-..-..-...++|++||+++|.
T Consensus       437 ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  437 AHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence                111455 66777777777777777653222222223677777777775

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.00  E-value=4.3e-10  Score=90.94  Aligned_cols=140  Identities=21%  Similarity=0.322  Sum_probs=81.6

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee------------------
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD------------------   60 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~------------------   60 (157)
                      |+.|++++|.+. .+|..+.  .+|+.|  ..|.+. .+|+.+.  ++|+.|++++|++++.                  
T Consensus       243 L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~L  316 (754)
T PRK15370        243 IQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSL  316 (754)
T ss_pred             ccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCcc
Confidence            456777777776 5555443  356666  555555 3455442  3566666666655421                  


Q ss_pred             --c-----ceeeeeecccccccceE-EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCC
Q 039394           61 --I-----IIVSMIDLQMVQKKNSI-AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLG  126 (157)
Q Consensus        61 --~-----~~l~~l~l~~n~l~~~~-~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~  126 (157)
                        +     ++++.|++++|.+...+ .+.  ..+..+      +. .+|..+  .+.|+.|++++|++. .+|..+..  
T Consensus       317 t~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~~--  388 (754)
T PRK15370        317 TALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLPA--  388 (754)
T ss_pred             ccCCccccccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHHH--
Confidence              1     14455555555554433 111  122222      22 355544  368999999999988 67776653  


Q ss_pred             CCCeEEccCCcceecCCCC--------CCcccccCCC
Q 039394          127 LLGVLSLSNNKLSGKIPSG--------TKLQTLDASS  155 (157)
Q Consensus       127 ~L~~L~ls~N~l~~~~p~~--------~~l~~l~~~~  155 (157)
                      .|+.|++++|.+. .+|..        +.+..+++..
T Consensus       389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~  424 (754)
T PRK15370        389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEY  424 (754)
T ss_pred             HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeC
Confidence            6899999999997 55543        3445565544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=6.1e-10  Score=75.12  Aligned_cols=112  Identities=29%  Similarity=0.325  Sum_probs=43.0

Q ss_pred             cccccc--ccccceeecCccCc-CCCCCCEEEccCCccee-----ecceeeeeecccccccceEEEceeeeecccccccc
Q 039394           23 QSLKVL--KSNHINGCVPIRLC-YVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPI   94 (157)
Q Consensus        23 ~~L~~L--~~n~~~~~~p~~~~-~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~   94 (157)
                      ..++.|  .+|.+.. + +.++ .+.+|+.|++++|.++.     .++.++.|++++|++.                 .+
T Consensus        19 ~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~-----------------~i   79 (175)
T PF14580_consen   19 VKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRIS-----------------SI   79 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS--------------------S-
T ss_pred             ccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCC-----------------cc
Confidence            345666  5666653 2 2344 46777778888877752     2237777778888776                 34


Q ss_pred             cccc-ccccCCCEEecCCCccCCCC-ChhhhcCCCCCeEEccCCcceecCCCC--------CCcccccCC
Q 039394           95 PTKI-DQLTMLHALDLSRNQPIGKI-PEGISQLGLLGVLSLSNNKLSGKIPSG--------TKLQTLDAS  154 (157)
Q Consensus        95 p~~~-~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p~~--------~~l~~l~~~  154 (157)
                      +..+ ..+++|++|++++|++...- -..+..+++|+.|++.+|+++.. +..        +.++.||..
T Consensus        80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   80 SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred             ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence            4444 35788999999999886421 24567788999999999988743 333        677777653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.98  E-value=1.1e-11  Score=95.15  Aligned_cols=147  Identities=27%  Similarity=0.384  Sum_probs=111.8

Q ss_pred             EEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc------eeeeeecccccc
Q 039394            3 YLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII------IVSMIDLQMVQK   74 (157)
Q Consensus         3 ~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------~l~~l~l~~n~l   74 (157)
                      +.|++.|++. ++|..+..+..|+.+  ..|.+. .+|..++.+..|.++|++.|+++ .+|      .|+.+.+++|++
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~sNNkl  155 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVSNNKL  155 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEecCcc
Confidence            4689999998 899999889999988  444444 78899999999999999999987 444      889999999999


Q ss_pred             cceE-EEceeeeeccc-----cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC---
Q 039394           75 KNSI-AIINVVVVGEL-----FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG---  145 (157)
Q Consensus        75 ~~~~-~~~~~~~l~~~-----~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~---  145 (157)
                      ...+ +++-...+..+     -...+|..++.+.+|+.|.++.|++. .+|+.+.++ .|..||++.|+++. +|..   
T Consensus       156 ~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~-iPv~fr~  232 (722)
T KOG0532|consen  156 TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISY-LPVDFRK  232 (722)
T ss_pred             ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceee-cchhhhh
Confidence            8766 55533333333     11246777788888888888888866 778887755 58899999999884 4544   


Q ss_pred             -CCcccccCCC
Q 039394          146 -TKLQTLDASS  155 (157)
Q Consensus       146 -~~l~~l~~~~  155 (157)
                       +.|++|.+..
T Consensus       233 m~~Lq~l~Len  243 (722)
T KOG0532|consen  233 MRHLQVLQLEN  243 (722)
T ss_pred             hhhheeeeecc
Confidence             6677766654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.96  E-value=6.9e-10  Score=62.14  Aligned_cols=44  Identities=41%  Similarity=0.519  Sum_probs=39.8

Q ss_pred             ccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcc
Q 039394           95 PTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKL  138 (157)
Q Consensus        95 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l  138 (157)
                      +..+..+++|+++++++|++....|+.|..+++|+++++++|+|
T Consensus        18 ~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen   18 PDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             HHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            45788999999999999999977788999999999999999975

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.96  E-value=5e-11  Score=95.73  Aligned_cols=152  Identities=26%  Similarity=0.357  Sum_probs=99.6

Q ss_pred             CcEEECcCCccccccCcch-hcccc-cccc--ccccceeecCc-cCcCCCCCCEEEccCCcceeec-c------eeeeee
Q 039394            1 MEYLDLSDNQLSEEIPHCS-RYWQS-LKVL--KSNHINGCVPI-RLCYVRPVQVLDISYSSILGDI-I------IVSMID   68 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~-~~l~~-L~~L--~~n~~~~~~p~-~~~~l~~L~~L~l~~n~~~~~~-~------~l~~l~   68 (157)
                      |++|+|..|++. ..|+.+ .-... +..|  +.|.+.. .|. .-..++.|+.|++.+|.++..+ |      .|+.|+
T Consensus       312 L~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh  389 (1081)
T KOG0618|consen  312 LRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH  389 (1081)
T ss_pred             eeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence            578999999998 556544 22222 4445  4454442 332 2234678999999999998543 3      999999


Q ss_pred             cccccccceE--EEceeeeeccc-cc----cccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec
Q 039394           69 LQMVQKKNSI--AIINVVVVGEL-FK----RPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK  141 (157)
Q Consensus        69 l~~n~l~~~~--~~~~~~~l~~~-~~----~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  141 (157)
                      ++.|++...+  .+.++..++++ ++    ..+|..+..+..|+.|....|++. .+| .+..++.|+.+|++.|+++..
T Consensus       390 LsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~  467 (1081)
T KOG0618|consen  390 LSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV  467 (1081)
T ss_pred             ecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence            9999998665  45555555554 22    245666666777777777777766 555 667777888888888877543


Q ss_pred             -CCCC---CCcccccCCCC
Q 039394          142 -IPSG---TKLQTLDASSY  156 (157)
Q Consensus       142 -~p~~---~~l~~l~~~~~  156 (157)
                       +|..   ++|+.||++.+
T Consensus       468 ~l~~~~p~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  468 TLPEALPSPNLKYLDLSGN  486 (1081)
T ss_pred             hhhhhCCCcccceeeccCC
Confidence             2222   67777777654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.96  E-value=9e-11  Score=86.11  Aligned_cols=14  Identities=7%  Similarity=0.107  Sum_probs=7.0

Q ss_pred             CCCCEEEccCCcce
Q 039394           45 RPVQVLDISYSSIL   58 (157)
Q Consensus        45 ~~L~~L~l~~n~~~   58 (157)
                      ++|+.+++++|.++
T Consensus       137 ~~L~~L~L~~n~l~  150 (319)
T cd00116         137 PALEKLVLGRNRLE  150 (319)
T ss_pred             CCceEEEcCCCcCC
Confidence            44555555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.95  E-value=3e-09  Score=90.21  Aligned_cols=119  Identities=22%  Similarity=0.255  Sum_probs=81.1

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc----eeeeeecccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII----IVSMIDLQMVQK   74 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~----~l~~l~l~~n~l   74 (157)
                      |+.|++++|.....+|.++..+++|+.|  .+|...+.+|..+ .+++|+.|++++|.....+|    +++.|++++|.+
T Consensus       780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i  858 (1153)
T PLN03210        780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI  858 (1153)
T ss_pred             chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCC
Confidence            3556677666555677777777777777  4443333555554 56777777777764333333    666777777777


Q ss_pred             cceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCc
Q 039394           75 KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNK  137 (157)
Q Consensus        75 ~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~  137 (157)
                      .                 .+|.++..+++|+.|+++++.-...+|..+..++.|+.+++++|.
T Consensus       859 ~-----------------~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        859 E-----------------EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             c-----------------cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            6                 578888888888888888754444677777888888888888774

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.90  E-value=4.8e-11  Score=88.15  Aligned_cols=43  Identities=28%  Similarity=0.244  Sum_probs=34.5

Q ss_pred             ccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394           97 KIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        97 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                      .|+.+++|+.+++++|++...-+.+|.....++.|++..|++.
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~  311 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE  311 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH
Confidence            4788999999999999998777777777777777777777663

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.89  E-value=3.2e-10  Score=83.18  Aligned_cols=139  Identities=20%  Similarity=0.158  Sum_probs=71.2

Q ss_pred             cEEECcCCcccc------ccCcchhcccccccc--ccccceeecCccCcCCCC---CCEEEccCCccee-----------
Q 039394            2 EYLDLSDNQLSE------EIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRP---VQVLDISYSSILG-----------   59 (157)
Q Consensus         2 ~~L~L~~n~l~~------~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~---L~~L~l~~n~~~~-----------   59 (157)
                      ++++++++.+.+      .++..+..+++|+.|  .+|.+.+..+..+..+.+   |++|++++|++.+           
T Consensus        54 ~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~  133 (319)
T cd00116          54 KELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK  133 (319)
T ss_pred             eEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH
Confidence            445555555441      123344555566666  555554434444434433   7777777776641           


Q ss_pred             ec-ceeeeeecccccccceE------EEceeeeeccc------ccc----ccccccccccCCCEEecCCCccCCC----C
Q 039394           60 DI-IIVSMIDLQMVQKKNSI------AIINVVVVGEL------FKR----PIPTKIDQLTMLHALDLSRNQPIGK----I  118 (157)
Q Consensus        60 ~~-~~l~~l~l~~n~l~~~~------~~~~~~~l~~~------~~~----~~p~~~~~l~~L~~L~l~~N~l~~~----~  118 (157)
                      .. ++++.+++++|.+.+..      .+..+..++++      +.+    .++..+..+++|++|++++|.+.+.    +
T Consensus       134 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  213 (319)
T cd00116         134 DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL  213 (319)
T ss_pred             hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH
Confidence            12 45677777777666311      12222222222      211    1223334445677777777766532    2


Q ss_pred             ChhhhcCCCCCeEEccCCccee
Q 039394          119 PEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus       119 p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                      +..+..+++|++|++++|.+++
T Consensus       214 ~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         214 AETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHHhcccCCCCEEecCCCcCch
Confidence            3344556677777777776653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.88  E-value=9.9e-09  Score=83.18  Aligned_cols=141  Identities=21%  Similarity=0.299  Sum_probs=87.3

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee---cceeeeeecccccccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD---IIIVSMIDLQMVQKKN   76 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~---~~~l~~l~l~~n~l~~   76 (157)
                      ..|+++.+.++ .+|+.+.  .+|+.|  ..|.++ .+|.   .+++|++|++++|+++..   .++++.|++++|.+..
T Consensus       204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~  276 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH  276 (788)
T ss_pred             cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcccCcccccceeeccCCchhh
Confidence            46899999998 7787765  468888  677777 4554   257899999999988732   2378889999998876


Q ss_pred             eE----EEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcC-----------------CCCCeEEccC
Q 039394           77 SI----AIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQL-----------------GLLGVLSLSN  135 (157)
Q Consensus        77 ~~----~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l-----------------~~L~~L~ls~  135 (157)
                      .+    .+..+....+.+. .+|.   ..++|+.|++++|++.+ +|.....+                 .+|+.|++++
T Consensus       277 Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~  351 (788)
T PRK15387        277 LPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSD  351 (788)
T ss_pred             hhhchhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCC
Confidence            54    2222221111122 2343   23678999999998874 44321111                 2455566666


Q ss_pred             CcceecCCCC-CCcccccCCC
Q 039394          136 NKLSGKIPSG-TKLQTLDASS  155 (157)
Q Consensus       136 N~l~~~~p~~-~~l~~l~~~~  155 (157)
                      |.+.+ +|.. ..++.|+++.
T Consensus       352 N~Ls~-LP~lp~~L~~L~Ls~  371 (788)
T PRK15387        352 NQLAS-LPTLPSELYKLWAYN  371 (788)
T ss_pred             CccCC-CCCCCcccceehhhc
Confidence            66653 3332 5555555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.88  E-value=2.7e-09  Score=59.73  Aligned_cols=57  Identities=28%  Similarity=0.430  Sum_probs=51.2

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSI   57 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~   57 (157)
                      |++|++++|+++...+..|..+++|++|  ..|.+....|..|..+++|+++++++|++
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999996666788999999999  89999988888999999999999999975

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.68  E-value=1.5e-08  Score=76.77  Aligned_cols=49  Identities=41%  Similarity=0.491  Sum_probs=30.9

Q ss_pred             ccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC
Q 039394           95 PTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG  145 (157)
Q Consensus        95 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~  145 (157)
                      +..++.+.+++.+++++|.+. .++. ++...+++.+++++|.+....|..
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             cchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence            455566666777777777765 3333 666677777777777666555444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.51  E-value=1.4e-07  Score=63.68  Aligned_cols=95  Identities=28%  Similarity=0.297  Sum_probs=33.5

Q ss_pred             CcCCCCCCEEEccCCccee------ecceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCcc
Q 039394           41 LCYVRPVQVLDISYSSILG------DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQP  114 (157)
Q Consensus        41 ~~~l~~L~~L~l~~n~~~~------~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l  114 (157)
                      +.+..++++|++++|.|+.      .+.+++.|++++|.+..                 ++ .+..++.|+.|++++|++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~-----------------l~-~l~~L~~L~~L~L~~N~I   76 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK-----------------LE-GLPGLPRLKTLDLSNNRI   76 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S-------------------T-T----TT--EEE--SS--
T ss_pred             cccccccccccccccccccccchhhhhcCCCEEECCCCCCcc-----------------cc-CccChhhhhhcccCCCCC
Confidence            3455678999999998862      23478999999999983                 33 577789999999999998


Q ss_pred             CCCCChhh-hcCCCCCeEEccCCcceecCCCC------CCcccccCCC
Q 039394          115 IGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG------TKLQTLDASS  155 (157)
Q Consensus       115 ~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~~------~~l~~l~~~~  155 (157)
                      . .+.+.+ ..+++|+.|++++|.|... .+.      ++|+.|++..
T Consensus        77 ~-~i~~~l~~~lp~L~~L~L~~N~I~~l-~~l~~L~~l~~L~~L~L~~  122 (175)
T PF14580_consen   77 S-SISEGLDKNLPNLQELYLSNNKISDL-NELEPLSSLPKLRVLSLEG  122 (175)
T ss_dssp             --S-CHHHHHH-TT--EEE-TTS---SC-CCCGGGGG-TT--EEE-TT
T ss_pred             C-ccccchHHhCCcCCEEECcCCcCCCh-HHhHHHHcCCCcceeeccC
Confidence            8 565555 4699999999999998642 222      6777777654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.46  E-value=1.3e-07  Score=71.70  Aligned_cols=152  Identities=29%  Similarity=0.390  Sum_probs=104.3

Q ss_pred             cEEECcCCccccccCcchhccc-ccccc--ccccceeecCccCcCCCCCCEEEccCCccee------ecceeeeeecccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQ-SLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG------DIIIVSMIDLQMV   72 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~-~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~------~~~~l~~l~l~~n   72 (157)
                      +.+++.+|.++ .++.....+. +|+.|  ..|.+. .+|..+..++.|+.|+++.|++..      ..+.++.+++++|
T Consensus       119 ~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N  196 (394)
T COG4886         119 TSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN  196 (394)
T ss_pred             eEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC
Confidence            46777788877 5666666663 78888  566665 455567788888888888887752      3347777888888


Q ss_pred             cccceE-EEceeeeeccc-c----ccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC--C
Q 039394           73 QKKNSI-AIINVVVVGEL-F----KRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP--S  144 (157)
Q Consensus        73 ~l~~~~-~~~~~~~l~~~-~----~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p--~  144 (157)
                      .+.... .+.....+.++ +    .-..+..+..+..+..+.+.+|++. .++..++.+..++.|++++|.++...+  .
T Consensus       197 ~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~  275 (394)
T COG4886         197 KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISSLGS  275 (394)
T ss_pred             ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceeccccccccccccccc
Confidence            888766 22233333333 1    1135566777888888888888865 557778888899999999998875433  2


Q ss_pred             CCCcccccCCCC
Q 039394          145 GTKLQTLDASSY  156 (157)
Q Consensus       145 ~~~l~~l~~~~~  156 (157)
                      ...++.+|++..
T Consensus       276 ~~~l~~L~~s~n  287 (394)
T COG4886         276 LTNLRELDLSGN  287 (394)
T ss_pred             cCccCEEeccCc
Confidence            277777777653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.43  E-value=8e-08  Score=69.52  Aligned_cols=81  Identities=22%  Similarity=0.171  Sum_probs=55.6

Q ss_pred             ccCcCCCCCCEEEccCCcce------eecceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCC
Q 039394           39 IRLCYVRPVQVLDISYSSIL------GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRN  112 (157)
Q Consensus        39 ~~~~~l~~L~~L~l~~n~~~------~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N  112 (157)
                      .....|..|+++|+|+|.|+      ..+|.++.|+++.|.+..                  -..+..+.+|++||+++|
T Consensus       278 ~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~------------------v~nLa~L~~L~~LDLS~N  339 (490)
T KOG1259|consen  278 VSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT------------------VQNLAELPQLQLLDLSGN  339 (490)
T ss_pred             EecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceee------------------ehhhhhcccceEeecccc
Confidence            34556778999999999875      346788999999998863                  234666777777777777


Q ss_pred             ccCCCCChhhhcCCCCCeEEccCCcc
Q 039394          113 QPIGKIPEGISQLGLLGVLSLSNNKL  138 (157)
Q Consensus       113 ~l~~~~p~~~~~l~~L~~L~ls~N~l  138 (157)
                      .+. .+..+-..+-+++.|.++.|.+
T Consensus       340 ~Ls-~~~Gwh~KLGNIKtL~La~N~i  364 (490)
T KOG1259|consen  340 LLA-ECVGWHLKLGNIKTLKLAQNKI  364 (490)
T ss_pred             hhH-hhhhhHhhhcCEeeeehhhhhH
Confidence            765 4444444555556666666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.30  E-value=8.2e-07  Score=46.15  Aligned_cols=38  Identities=45%  Similarity=0.544  Sum_probs=31.0

Q ss_pred             cCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394          102 TMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus       102 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                      ++|++|++++|++. .+|..++.+++|+.|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            46889999999988 677778999999999999998873

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.25  E-value=1.2e-08  Score=80.97  Aligned_cols=116  Identities=25%  Similarity=0.251  Sum_probs=83.8

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeecccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQMV   72 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~n   72 (157)
                      .+.+.++|.+. .+..++.-++.++.|  ..|.+.. + +.+.+++.|++||+++|.+. .+|       .|..|.+++|
T Consensus       167 ~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN  242 (1096)
T KOG1859|consen  167 ATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNN  242 (1096)
T ss_pred             hhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhc-cccccchhhhhheeeeeccc
Confidence            45567778777 677778888888888  6676663 3 36788888889999888875 233       6777888888


Q ss_pred             cccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCC-ChhhhcCCCCCeEEccCCcce
Q 039394           73 QKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI-PEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        73 ~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~  139 (157)
                      .+..                  -..+.++++|..||+++|-+.+.- -..+..+..|+.|++.+|++.
T Consensus       243 ~l~t------------------L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  243 ALTT------------------LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHHh------------------hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            8763                  235677888899999999887532 122455667888888888873

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.23  E-value=8.5e-08  Score=71.35  Aligned_cols=108  Identities=18%  Similarity=0.120  Sum_probs=73.1

Q ss_pred             ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eee-eeecccccccceE--EEceeeeeccc------ccc
Q 039394           29 KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVS-MIDLQMVQKKNSI--AIINVVVVGEL------FKR   92 (157)
Q Consensus        29 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~-~l~l~~n~l~~~~--~~~~~~~l~~~------~~~   92 (157)
                      ..|.++...|..|+.+++|+.||+|.|.|+..-|       ++. .+..++|++.+.+  .+..+..+.-+      +..
T Consensus        75 dqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~C  154 (498)
T KOG4237|consen   75 DQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINC  154 (498)
T ss_pred             ccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcc
Confidence            6777776777778888888888888887763333       332 3344557777665  44444444333      333


Q ss_pred             ccccccccccCCCEEecCCCccCCCCCh-hhhcCCCCCeEEccCCc
Q 039394           93 PIPTKIDQLTMLHALDLSRNQPIGKIPE-GISQLGLLGVLSLSNNK  137 (157)
Q Consensus        93 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~L~~L~ls~N~  137 (157)
                      ...+.+..++++..|.+.+|.+. .++. ++..+.+++.+.++.|+
T Consensus       155 ir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  155 IRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCc
Confidence            45667788888888888888866 4544 67788888888888877

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.22  E-value=8.4e-08  Score=70.12  Aligned_cols=44  Identities=23%  Similarity=0.268  Sum_probs=33.9

Q ss_pred             cccccccCCCEEecCCCccCCC----CChhhhcCCCCCeEEccCCcce
Q 039394           96 TKIDQLTMLHALDLSRNQPIGK----IPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        96 ~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                      ..+..+++|+.||+++|.|...    +...+..+++|+.++++++.+.
T Consensus       207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            4567889999999999988653    3445667888889999888764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.03  E-value=2.2e-07  Score=59.95  Aligned_cols=78  Identities=17%  Similarity=0.172  Sum_probs=54.6

Q ss_pred             CCCCCEEEccCCcceee-------cceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCC
Q 039394           44 VRPVQVLDISYSSILGD-------IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIG  116 (157)
Q Consensus        44 l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~  116 (157)
                      -..|..+++++|.++..       +|..+.+++++|+++                 .+|.++..++.|+.++++.|.+. 
T Consensus        52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-----------------dvPeE~Aam~aLr~lNl~~N~l~-  113 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-----------------DVPEELAAMPALRSLNLRFNPLN-  113 (177)
T ss_pred             CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-----------------hchHHHhhhHHhhhcccccCccc-
Confidence            34455566777766522       225566677777776                 57888888888888888888876 


Q ss_pred             CCChhhhcCCCCCeEEccCCcce
Q 039394          117 KIPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus       117 ~~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                      ..|..+..+.++..|+..+|.+.
T Consensus       114 ~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  114 AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             cchHHHHHHHhHHHhcCCCCccc
Confidence            56677777888888888777754

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.97  E-value=1.2e-06  Score=67.01  Aligned_cols=115  Identities=27%  Similarity=0.350  Sum_probs=72.4

Q ss_pred             EECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-----cceeeeeecccccccc
Q 039394            4 LDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQKKN   76 (157)
Q Consensus         4 L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~l~~   76 (157)
                      +.+..|.+. .+-..+..+.+++.+  ..|.+.+ +...+..+++|++|++++|.|+..     ++.|+.|++.+|.++.
T Consensus        77 l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~  154 (414)
T KOG0531|consen   77 LNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISD  154 (414)
T ss_pred             hccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccchhhccchhhheeccCcchh
Confidence            344555555 233445666777777  6666664 333366788888888888887633     2267777888888763


Q ss_pred             eEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChh-hhcCCCCCeEEccCCcce
Q 039394           77 SIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEG-ISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        77 ~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~L~ls~N~l~  139 (157)
                      .                  ..+..++.|+.+++++|.+.. +... ...+.+++.+++++|.+.
T Consensus       155 ~------------------~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  155 I------------------SGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             c------------------cCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchh
Confidence            2                  234446777777888887663 3321 356667777777777654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.95  E-value=1.2e-05  Score=41.69  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.7

Q ss_pred             ccccccccccCCCEEecCCCccC
Q 039394           93 PIPTKIDQLTMLHALDLSRNQPI  115 (157)
Q Consensus        93 ~~p~~~~~l~~L~~L~l~~N~l~  115 (157)
                      .+|..+..+++|+.|++++|++.
T Consensus        15 ~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen   15 DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ccCchHhCCCCCCEEEecCCCCC
Confidence            57777999999999999999977

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.94  E-value=5.7e-06  Score=68.58  Aligned_cols=96  Identities=24%  Similarity=0.277  Sum_probs=57.5

Q ss_pred             ccccc--cccc--ceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeecccccccceEEEceeeeecccccc
Q 039394           24 SLKVL--KSNH--INGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQMVQKKNSIAIINVVVVGELFKR   92 (157)
Q Consensus        24 ~L~~L--~~n~--~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~   92 (157)
                      .|++|  ..|.  +....+..|..++.|++||+++|.--+.+|       +|+.|+++...+.                 
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-----------------  608 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-----------------  608 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-----------------
Confidence            46666  4443  343344456678888888888765444444       5556666665555                 


Q ss_pred             ccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCC
Q 039394           93 PIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNN  136 (157)
Q Consensus        93 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N  136 (157)
                      .+|..+..++.|.+|++..+.....+|.....+++|++|.+..-
T Consensus       609 ~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  609 HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            46666666666666666666554445555555666666666543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=2.9e-06  Score=64.03  Aligned_cols=140  Identities=22%  Similarity=0.190  Sum_probs=81.5

Q ss_pred             CcEEECcCCccccccCcc-hhcccccccc--ccccce-eecCccCcCCCCCCEEEccCCc-ceee------cceeeeeec
Q 039394            1 MEYLDLSDNQLSEEIPHC-SRYWQSLKVL--KSNHIN-GCVPIRLCYVRPVQVLDISYSS-ILGD------IIIVSMIDL   69 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~-~~~l~~L~~L--~~n~~~-~~~p~~~~~l~~L~~L~l~~n~-~~~~------~~~l~~l~l   69 (157)
                      |+.|+++.|.+.--+... -..+++|+.|  +.+.++ ..+......+|++++|++..|. +...      +..++.|++
T Consensus       174 Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL  253 (505)
T KOG3207|consen  174 LENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL  253 (505)
T ss_pred             chhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence            467888888876322211 1356677777  555554 3455556678888888888884 2111      117788888


Q ss_pred             ccccccceE---EEceeeeeccc---ccc----ccccc-----cccccCCCEEecCCCccCCCCC--hhhhcCCCCCeEE
Q 039394           70 QMVQKKNSI---AIINVVVVGEL---FKR----PIPTK-----IDQLTMLHALDLSRNQPIGKIP--EGISQLGLLGVLS  132 (157)
Q Consensus        70 ~~n~l~~~~---~~~~~~~l~~~---~~~----~~p~~-----~~~l~~L~~L~l~~N~l~~~~p--~~~~~l~~L~~L~  132 (157)
                      ++|.+-+..   ....++.++.+   ..+    ..|+.     ...++.|++|++..|++. .++  ..+..+.+++.+.
T Consensus       254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~  332 (505)
T KOG3207|consen  254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLR  332 (505)
T ss_pred             cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhh
Confidence            888876544   22233222222   111    22322     244567888888888874 222  2345566777777


Q ss_pred             ccCCcceec
Q 039394          133 LSNNKLSGK  141 (157)
Q Consensus       133 ls~N~l~~~  141 (157)
                      +..|.+..+
T Consensus       333 ~~~n~ln~e  341 (505)
T KOG3207|consen  333 ITLNYLNKE  341 (505)
T ss_pred             ccccccccc
Confidence            777776543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=3.2e-06  Score=63.78  Aligned_cols=138  Identities=18%  Similarity=0.175  Sum_probs=85.4

Q ss_pred             CcEEECcCCcccc--ccCcchhcccccccc--ccccceeecCcc-CcCCCCCCEEEccCCcce--------eecceeeee
Q 039394            1 MEYLDLSDNQLSE--EIPHCSRYWQSLKVL--KSNHINGCVPIR-LCYVRPVQVLDISYSSIL--------GDIIIVSMI   67 (157)
Q Consensus         1 L~~L~L~~n~l~~--~~p~~~~~l~~L~~L--~~n~~~~~~p~~-~~~l~~L~~L~l~~n~~~--------~~~~~l~~l   67 (157)
                      ++.|||++|-+..  .+-.....+++|+.|  +.|.+.-..... -..++.++.|.++.|.++        ..+|+++.|
T Consensus       148 v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L  227 (505)
T KOG3207|consen  148 VRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVL  227 (505)
T ss_pred             ceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHh
Confidence            3578999998872  122334678899999  777776322221 225788999999999875        356799999


Q ss_pred             ecccccccce-E-EEceeeeeccc-------cccccccccccccCCCEEecCCCccCC-CCChh-----hhcCCCCCeEE
Q 039394           68 DLQMVQKKNS-I-AIINVVVVGEL-------FKRPIPTKIDQLTMLHALDLSRNQPIG-KIPEG-----ISQLGLLGVLS  132 (157)
Q Consensus        68 ~l~~n~l~~~-~-~~~~~~~l~~~-------~~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~-----~~~l~~L~~L~  132 (157)
                      ++..|..... . ....+..+.++       +.-..-...+.++.|..|+++.+.+.. ..|+.     ...+++|++|+
T Consensus       228 ~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~  307 (505)
T KOG3207|consen  228 YLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLN  307 (505)
T ss_pred             hhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeee
Confidence            9999952211 1 11112222222       111111235667777777777777653 23333     45678888999


Q ss_pred             ccCCcc
Q 039394          133 LSNNKL  138 (157)
Q Consensus       133 ls~N~l  138 (157)
                      +..|++
T Consensus       308 i~~N~I  313 (505)
T KOG3207|consen  308 ISENNI  313 (505)
T ss_pred             cccCcc
Confidence            999888

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.86  E-value=1.9e-06  Score=55.69  Aligned_cols=83  Identities=18%  Similarity=0.242  Sum_probs=46.7

Q ss_pred             CCCCCEEEccCCccee------ecceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCC
Q 039394           44 VRPVQVLDISYSSILG------DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK  117 (157)
Q Consensus        44 l~~L~~L~l~~n~~~~------~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~  117 (157)
                      ++.++.++++.|.+..      .+|.|+.+++++|++.                 ..|+-+..+.++-.|+...|.+. +
T Consensus        76 f~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~-----------------~~p~vi~~L~~l~~Lds~~na~~-e  137 (177)
T KOG4579|consen   76 FPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN-----------------AEPRVIAPLIKLDMLDSPENARA-E  137 (177)
T ss_pred             cchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc-----------------cchHHHHHHHhHHHhcCCCCccc-c
Confidence            3345555555555541      1225555555555554                 46666666778888888888865 5


Q ss_pred             CChhhhcCCCCCeEEccCCcceecCCC
Q 039394          118 IPEGISQLGLLGVLSLSNNKLSGKIPS  144 (157)
Q Consensus       118 ~p~~~~~l~~L~~L~ls~N~l~~~~p~  144 (157)
                      +|-.+-.-......+++++++.+.-+.
T Consensus       138 id~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  138 IDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             CcHHHhccccHHHHHhcCCcccccCcc
Confidence            554433333333445566666665443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.82  E-value=8.1e-06  Score=67.69  Aligned_cols=100  Identities=22%  Similarity=0.260  Sum_probs=60.2

Q ss_pred             chhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeecccccccceEEEceeeeecc
Q 039394           18 CSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQMVQKKNSIAIINVVVVGE   88 (157)
Q Consensus        18 ~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~n~l~~~~~~~~~~~l~~   88 (157)
                      .|..|+.|.+|  +.|.--+.+|..++.+-+|++|++++..+. ++|       .+..|++..+.-..            
T Consensus       566 ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~------------  632 (889)
T KOG4658|consen  566 FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLE------------  632 (889)
T ss_pred             HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccc------------
Confidence            35667777777  445555567777777777777777777766 444       55556665544321            


Q ss_pred             ccccccccccccccCCCEEecCCCcc--CCCCChhhhcCCCCCeEEcc
Q 039394           89 LFKRPIPTKIDQLTMLHALDLSRNQP--IGKIPEGISQLGLLGVLSLS  134 (157)
Q Consensus        89 ~~~~~~p~~~~~l~~L~~L~l~~N~l--~~~~p~~~~~l~~L~~L~ls  134 (157)
                          .+|.....+.+|++|.+..-..  .+..-+.+..+.+|+.+...
T Consensus       633 ----~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  633 ----SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             ----cccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence                2345556688888888776542  22333445556666655554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.64  E-value=5.5e-06  Score=63.46  Aligned_cols=75  Identities=24%  Similarity=0.269  Sum_probs=54.3

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----ecceeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~   73 (157)
                      |+.+++..|.+. .+...+..+++|++|  +.|.+...-  .+..++.|+.|++++|.+..     .++.++.+++++|.
T Consensus        97 l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~  173 (414)
T KOG0531|consen   97 LEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNR  173 (414)
T ss_pred             eeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccCCccchhhhcccCCcch
Confidence            457888889888 555447778889998  778777532  24567778899999998762     23477788888888


Q ss_pred             ccceE
Q 039394           74 KKNSI   78 (157)
Q Consensus        74 l~~~~   78 (157)
                      +....
T Consensus       174 i~~ie  178 (414)
T KOG0531|consen  174 IVDIE  178 (414)
T ss_pred             hhhhh
Confidence            77544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.54  E-value=0.00038  Score=53.06  Aligned_cols=123  Identities=15%  Similarity=0.176  Sum_probs=66.1

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--c-cccceeecCccCcCCCCCCEEEccCC-cceeecc-eeeeeeccccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--K-SNHINGCVPIRLCYVRPVQVLDISYS-SILGDII-IVSMIDLQMVQKK   75 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~-~n~~~~~~p~~~~~l~~L~~L~l~~n-~~~~~~~-~l~~l~l~~n~l~   75 (157)
                      ++.|++++|.++ .+|. +  -.+|+.|  . .+.+ ..+|+.+  .++|++|++++| .+. .+| +++.|++..+...
T Consensus        54 l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~sLe~L~L~~n~~~  125 (426)
T PRK15386         54 SGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEIS-GLPESVRSLEIKGSATD  125 (426)
T ss_pred             CCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccc-ccccccceEEeCCCCCc
Confidence            467888888777 5552 2  2347777  2 2333 3455544  357888888887 554 444 7777887766543


Q ss_pred             ce---E-EEceeeeecc--ccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCC
Q 039394           76 NS---I-AIINVVVVGE--LFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNN  136 (157)
Q Consensus        76 ~~---~-~~~~~~~l~~--~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N  136 (157)
                      ..   + .+..+..-..  .....+|.  ....+|++|+++++... .+|+.+.  .+|+.|+++.+
T Consensus       126 ~L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        126 SIKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             ccccCcchHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            22   1 1221111000  00000110  11247888888877754 3444333  47788888765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.47  E-value=1.4e-05  Score=64.13  Aligned_cols=56  Identities=32%  Similarity=0.400  Sum_probs=34.5

Q ss_pred             ccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CCcccccCCC
Q 039394           97 KIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASS  155 (157)
Q Consensus        97 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~  155 (157)
                      ++..++.++.|++++|++++ +. .+..++.|++||+++|.+. .+|..    .+++.|.++.
T Consensus       182 SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence            45556677777777777663 32 5667777777777777765 33333    4455555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.45  E-value=1.3e-05  Score=59.03  Aligned_cols=62  Identities=21%  Similarity=0.276  Sum_probs=43.9

Q ss_pred             ccccccccCCCEEecCCCccCCC----CChhhhcCCCCCeEEccCCcceec--------CCCCCCcccccCCCC
Q 039394           95 PTKIDQLTMLHALDLSRNQPIGK----IPEGISQLGLLGVLSLSNNKLSGK--------IPSGTKLQTLDASSY  156 (157)
Q Consensus        95 p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~--------~p~~~~l~~l~~~~~  156 (157)
                      ...+..++.|+.+.++.|.+...    +...+..+++|+.||+.+|-++..        +|.-+.++.++++.+
T Consensus       178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            34567778899999999987532    223467899999999999987532        222266777777665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=9.7e-05  Score=53.77  Aligned_cols=57  Identities=28%  Similarity=0.324  Sum_probs=38.7

Q ss_pred             cccccCCCEEecCCCccCCC-CChhhhcCCCCCeEEccCCcceecCCCC----------CCcccccCC
Q 039394           98 IDQLTMLHALDLSRNQPIGK-IPEGISQLGLLGVLSLSNNKLSGKIPSG----------TKLQTLDAS  154 (157)
Q Consensus        98 ~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p~~----------~~l~~l~~~  154 (157)
                      ...++.+..|+++.|++... .-+.+..++.+..+.+++|+++..+-..          ++.++|+-+
T Consensus       220 se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  220 SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            44566677788888887642 1345788999999999999885433222          666666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.29  E-value=0.00011  Score=59.81  Aligned_cols=124  Identities=19%  Similarity=0.206  Sum_probs=67.9

Q ss_pred             CcEEECcCCccc-cccCcch-hcccccccc--ccccce-eecCccCcCCCCCCEEEccCCccee-----ecceeeeeecc
Q 039394            1 MEYLDLSDNQLS-EEIPHCS-RYWQSLKVL--KSNHIN-GCVPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQ   70 (157)
Q Consensus         1 L~~L~L~~n~l~-~~~p~~~-~~l~~L~~L--~~n~~~-~~~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~   70 (157)
                      |++|++++.+.- ..+|..+ ..+|+|+.|  .+-.+. +....-+.++++|..||+|+..++.     .+.+|+.|.+.
T Consensus       124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mr  203 (699)
T KOG3665|consen  124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMR  203 (699)
T ss_pred             hhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhcc
Confidence            455666654432 1233333 446777777  222221 2233345567777777777776651     22355555555


Q ss_pred             cccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhh-------hcCCCCCeEEccCCccee
Q 039394           71 MVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGI-------SQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus        71 ~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-------~~l~~L~~L~ls~N~l~~  140 (157)
                      +-.+...               ..-..+..+++|+.||+|..+... .+..+       ..++.|+.||+|+..+..
T Consensus       204 nLe~e~~---------------~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  204 NLEFESY---------------QDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             CCCCCch---------------hhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchhH
Confidence            5444321               112245678888888888866442 22221       237788889988776644

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.97  E-value=0.002  Score=44.45  Aligned_cols=39  Identities=10%  Similarity=-0.098  Sum_probs=25.1

Q ss_pred             ccCcCCCCCCEEEccCCcceeec-------ceeeeeecccccccce
Q 039394           39 IRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQMVQKKNS   77 (157)
Q Consensus        39 ~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~n~l~~~   77 (157)
                      +.|.++++|.+|.+++|+|+..-       |.++.|.+.+|.+...
T Consensus        58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l  103 (233)
T KOG1644|consen   58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL  103 (233)
T ss_pred             ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh
Confidence            34667777777777777776322       2566677777766543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.72  E-value=0.00031  Score=50.62  Aligned_cols=122  Identities=16%  Similarity=0.102  Sum_probs=67.9

Q ss_pred             hhcccccccc--ccccceeecCc----cCcCCCCCCEEEccCCccee--------------------ecceeeeeecccc
Q 039394           19 SRYWQSLKVL--KSNHINGCVPI----RLCYVRPVQVLDISYSSILG--------------------DIIIVSMIDLQMV   72 (157)
Q Consensus        19 ~~~l~~L~~L--~~n~~~~~~p~----~~~~l~~L~~L~l~~n~~~~--------------------~~~~l~~l~l~~n   72 (157)
                      +..|+.++..  +.|.+....|.    .+++-+.|.+|.+++|.+..                    .-|.++.+++..|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            4555666666  66666544333    35566777777777776531                    1227777777777


Q ss_pred             cccceE------EEceeeeeccc---cccccccc--------cccccCCCEEecCCCccCCC----CChhhhcCCCCCeE
Q 039394           73 QKKNSI------AIINVVVVGEL---FKRPIPTK--------IDQLTMLHALDLSRNQPIGK----IPEGISQLGLLGVL  131 (157)
Q Consensus        73 ~l~~~~------~~~~~~~l~~~---~~~~~p~~--------~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L  131 (157)
                      ++....      .+.....+.++   -.+.-|..        +..+++|+.||+.+|.++..    +...+..++.|+.|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            776543      11111111111   12223332        33467788888888877643    23344556667777


Q ss_pred             EccCCccee
Q 039394          132 SLSNNKLSG  140 (157)
Q Consensus       132 ~ls~N~l~~  140 (157)
                      .+.+|-++.
T Consensus       248 ~lnDClls~  256 (388)
T COG5238         248 RLNDCLLSN  256 (388)
T ss_pred             cccchhhcc
Confidence            777776543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.62  E-value=0.00088  Score=29.17  Aligned_cols=20  Identities=50%  Similarity=0.775  Sum_probs=16.5

Q ss_pred             CcEEECcCCccccccCcchhc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRY   21 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~   21 (157)
                      |++|++++|+++ .+|+.|..
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            689999999999 78876654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=7.8e-05  Score=54.26  Aligned_cols=137  Identities=17%  Similarity=0.142  Sum_probs=76.7

Q ss_pred             CcEEECcCCccccc-cCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCC-ccee--------ecceeeeee
Q 039394            1 MEYLDLSDNQLSEE-IPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYS-SILG--------DIIIVSMID   68 (157)
Q Consensus         1 L~~L~L~~n~l~~~-~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n-~~~~--------~~~~l~~l~   68 (157)
                      |++||||+-.++.. +-.-+..+.+|+.|  .++++...+-..+..=.+|+.++++.+ .++.        ....+..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            35677777776621 22234556677777  677777666666777777777777764 2321        111555556


Q ss_pred             cccccccceE----------EEceeeeeccc---cccccccccccccCCCEEecCCCccCC-CCChhhhcCCCCCeEEcc
Q 039394           69 LQMVQKKNSI----------AIINVVVVGEL---FKRPIPTKIDQLTMLHALDLSRNQPIG-KIPEGISQLGLLGVLSLS  134 (157)
Q Consensus        69 l~~n~l~~~~----------~~~~~~~l~~~---~~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~ls  134 (157)
                      ++.+-+....          .+.+++...+.   ....+..-...++++.+||++++.... ..-.++..++-|+++.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            6655554321          22222222111   111233334678888899998875432 233345667778888887


Q ss_pred             CCc
Q 039394          135 NNK  137 (157)
Q Consensus       135 ~N~  137 (157)
                      .+-
T Consensus       347 RCY  349 (419)
T KOG2120|consen  347 RCY  349 (419)
T ss_pred             hhc
Confidence            764

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.36  E-value=0.0011  Score=28.86  Aligned_cols=19  Identities=47%  Similarity=0.583  Sum_probs=11.1

Q ss_pred             CCEEecCCCccCCCCChhhh
Q 039394          104 LHALDLSRNQPIGKIPEGIS  123 (157)
Q Consensus       104 L~~L~l~~N~l~~~~p~~~~  123 (157)
                      |++|++++|++. .+|+.|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            556666666655 5555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.29  E-value=0.0015  Score=53.38  Aligned_cols=94  Identities=21%  Similarity=0.208  Sum_probs=59.3

Q ss_pred             CCCCCEEEccCCcce--------eecceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccC
Q 039394           44 VRPVQVLDISYSSIL--------GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI  115 (157)
Q Consensus        44 l~~L~~L~l~~n~~~--------~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~  115 (157)
                      +|+|+.|.+++=.+.        ..+|+|..||+++..+..                 + .+++.+++|+.|.+.+=.+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-----------------l-~GIS~LknLq~L~mrnLe~e  208 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-----------------L-SGISRLKNLQVLSMRNLEFE  208 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-----------------c-HHHhccccHHHHhccCCCCC
Confidence            677777777664332        356688888888877762                 2 45677777777777665544


Q ss_pred             C-CCChhhhcCCCCCeEEccCCcceec--CCCC--------CCcccccCCC
Q 039394          116 G-KIPEGISQLGLLGVLSLSNNKLSGK--IPSG--------TKLQTLDASS  155 (157)
Q Consensus       116 ~-~~p~~~~~l~~L~~L~ls~N~l~~~--~p~~--------~~l~~l~~~~  155 (157)
                      . .--..+..+++|++||+|.......  +...        +.|+.||++.
T Consensus       209 ~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  209 SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             chhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            2 1123466799999999997543211  1111        6777777763

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.27  E-value=0.019  Score=44.06  Aligned_cols=53  Identities=13%  Similarity=0.171  Sum_probs=29.4

Q ss_pred             hcccccccc--ccccceeecCccCcCCCCCCEEEccCC-cce---eecc-eeeeeecccc-cccc
Q 039394           20 RYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYS-SIL---GDII-IVSMIDLQMV-QKKN   76 (157)
Q Consensus        20 ~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n-~~~---~~~~-~l~~l~l~~n-~l~~   76 (157)
                      ..+.++..|  ..|.+. .+|.   -.++|+.|.++++ .++   +.+| +|+.|.+++| .+..
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~s  109 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISG  109 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccc
Confidence            345667777  455444 3442   2345788887663 322   1222 7777888777 4443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.21  E-value=0.005  Score=43.88  Aligned_cols=15  Identities=13%  Similarity=0.191  Sum_probs=9.3

Q ss_pred             CcCCCCCCEEEccCC
Q 039394           41 LCYVRPVQVLDISYS   55 (157)
Q Consensus        41 ~~~l~~L~~L~l~~n   55 (157)
                      +-.+++|+.|.++.|
T Consensus        61 ~P~Lp~LkkL~lsdn   75 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDN   75 (260)
T ss_pred             CCCcchhhhhcccCC
Confidence            444566666666666

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.06  E-value=0.0095  Score=41.22  Aligned_cols=72  Identities=19%  Similarity=0.213  Sum_probs=52.0

Q ss_pred             EEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcce--------eecceeeeeecccc
Q 039394            3 YLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL--------GDIIIVSMIDLQMV   72 (157)
Q Consensus         3 ~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~--------~~~~~l~~l~l~~n   72 (157)
                      .+||++|.+. .+ .-+..++.|++|  .+|+++..-|.--.-+++|..|.+.+|.|.        ..+|.|+.|.+=+|
T Consensus        46 ~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N  123 (233)
T KOG1644|consen   46 AIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN  123 (233)
T ss_pred             eecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence            5788888886 33 346677888888  788888665655455678999999999875        24557777777777


Q ss_pred             cccc
Q 039394           73 QKKN   76 (157)
Q Consensus        73 ~l~~   76 (157)
                      ....
T Consensus       124 pv~~  127 (233)
T KOG1644|consen  124 PVEH  127 (233)
T ss_pred             chhc
Confidence            7654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.00051  Score=49.68  Aligned_cols=45  Identities=27%  Similarity=0.260  Sum_probs=21.6

Q ss_pred             cccccCCCEEecCCCccCCCCCh--hhhcCCCCCeEEccCCcceecCC
Q 039394           98 IDQLTMLHALDLSRNQPIGKIPE--GISQLGLLGVLSLSNNKLSGKIP  143 (157)
Q Consensus        98 ~~~l~~L~~L~l~~N~l~~~~p~--~~~~l~~L~~L~ls~N~l~~~~p  143 (157)
                      +..|+.|++|.+..|.|. .+.+  .+.++++|+.|.+..|+=.|.-+
T Consensus        59 l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   59 LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAG  105 (388)
T ss_pred             HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccc
Confidence            344555555555555544 2211  23445555555555555444333

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.09  E-value=0.0091  Score=43.32  Aligned_cols=44  Identities=32%  Similarity=0.297  Sum_probs=35.8

Q ss_pred             cccccccCCCEEecCCCccCCCCChhh----hcCCCCCeEEccCCcce
Q 039394           96 TKIDQLTMLHALDLSRNQPIGKIPEGI----SQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        96 ~~~~~l~~L~~L~l~~N~l~~~~p~~~----~~l~~L~~L~ls~N~l~  139 (157)
                      ..+-+|+.++..++|+|.|....|+.+    .....+.+|.+++|.+.
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            346678999999999999988777764    45678999999999763

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.56  E-value=0.0039  Score=45.27  Aligned_cols=77  Identities=18%  Similarity=0.104  Sum_probs=47.1

Q ss_pred             CcCCCCCCEEEccCCcceeecc-----eeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccC
Q 039394           41 LCYVRPVQVLDISYSSILGDII-----IVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI  115 (157)
Q Consensus        41 ~~~l~~L~~L~l~~n~~~~~~~-----~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~  115 (157)
                      +..|+.|++|.+|-|+|+..-|     .|+.|++.-|.+.+..++               .-+.++++|+.|++..|.-.
T Consensus        37 c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL---------------~YLknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   37 CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDEL---------------EYLKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHH---------------HHHhcCchhhhHhhccCCcc
Confidence            3456777777777777764433     566666666666532111               12456777888888888777


Q ss_pred             CCCChh-----hhcCCCCCeEE
Q 039394          116 GKIPEG-----ISQLGLLGVLS  132 (157)
Q Consensus       116 ~~~p~~-----~~~l~~L~~L~  132 (157)
                      +..+..     +.-+++|+.||
T Consensus       102 ~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  102 GEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cccchhHHHHHHHHcccchhcc
Confidence            765442     44566666655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.28  E-value=0.034  Score=39.78  Aligned_cols=88  Identities=15%  Similarity=0.117  Sum_probs=50.7

Q ss_pred             cCccCcCCCCCCEEEccCCccee-----ecceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCC
Q 039394           37 VPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSR  111 (157)
Q Consensus        37 ~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~  111 (157)
                      +....-.+..++.+.+.+..++.     .+|+|+.|.++.|.+...              ..++.-...+++|+++++++
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~--------------~~l~vl~e~~P~l~~l~ls~  100 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVS--------------GGLEVLAEKAPNLKVLNLSG  100 (260)
T ss_pred             cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCccccc--------------ccceehhhhCCceeEEeecC
Confidence            33333444555566555555542     233777777777744321              23333445557888888888


Q ss_pred             CccCCCCChh---hhcCCCCCeEEccCCccee
Q 039394          112 NQPIGKIPEG---ISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus       112 N~l~~~~p~~---~~~l~~L~~L~ls~N~l~~  140 (157)
                      |++..  +++   +..+.+|..|++.+|..++
T Consensus       101 Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  101 NKIKD--LSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             Ccccc--ccccchhhhhcchhhhhcccCCccc
Confidence            88662  333   3445667777877776554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.72  E-value=0.039  Score=22.25  Aligned_cols=12  Identities=50%  Similarity=0.811  Sum_probs=8.2

Q ss_pred             CcEEECcCCccc
Q 039394            1 MEYLDLSDNQLS   12 (157)
Q Consensus         1 L~~L~L~~n~l~   12 (157)
                      |++|++++|+++
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            688999999987

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.48  E-value=0.026  Score=41.52  Aligned_cols=80  Identities=21%  Similarity=0.259  Sum_probs=46.3

Q ss_pred             CCCCCEEEccCCcce---------eecceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCcc
Q 039394           44 VRPVQVLDISYSSIL---------GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQP  114 (157)
Q Consensus        44 l~~L~~L~l~~n~~~---------~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l  114 (157)
                      .+.++.+|+.+|.|+         ..+|.+++|+++.|++...+             +..|   ....+|+.+-+.+..+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-------------~~lp---~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-------------KSLP---LPLKNLRVLVLNGTGL  133 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-------------ccCc---ccccceEEEEEcCCCC
Confidence            456777788888765         35667777777777776421             0122   2234556665555443


Q ss_pred             CC-CCChhhhcCCCCCeEEccCCcce
Q 039394          115 IG-KIPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus       115 ~~-~~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                      .= .....+..++.++.|+++.|.+.
T Consensus       134 ~w~~~~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  134 SWTQSTSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             Chhhhhhhhhcchhhhhhhhccchhh
Confidence            21 22334556677777777777543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=91.58  E-value=0.027  Score=41.48  Aligned_cols=133  Identities=17%  Similarity=0.205  Sum_probs=74.0

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--c-ccccee-ecCccCcCCCCCCEEEccCCcceee---------cceeeee
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--K-SNHING-CVPIRLCYVRPVQVLDISYSSILGD---------IIIVSMI   67 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~-~n~~~~-~~p~~~~~l~~L~~L~l~~n~~~~~---------~~~l~~l   67 (157)
                      |+-|.+.++++.+.+-..++.=.+|+.+  + .+.++. ...-.+.+++.|..|+++++.+...         .+.+..|
T Consensus       212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L  291 (419)
T KOG2120|consen  212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL  291 (419)
T ss_pred             hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence            4567788888887777777777778877  2 233331 1222355677888888888765321         1144555


Q ss_pred             eccccccc--c-eE--EEceeeeeccc-------cccccccccccccCCCEEecCCCccCCCCChh---hhcCCCCCeEE
Q 039394           68 DLQMVQKK--N-SI--AIINVVVVGEL-------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEG---ISQLGLLGVLS  132 (157)
Q Consensus        68 ~l~~n~l~--~-~~--~~~~~~~l~~~-------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~---~~~l~~L~~L~  132 (157)
                      +++++.-.  . +.  -..+++.+.++       +......++.+++.|+++.++.+.  +.+|..   +...+++.+||
T Consensus       292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLd  369 (419)
T KOG2120|consen  292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLD  369 (419)
T ss_pred             hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEE
Confidence            55544211  1 00  11222222222       222344556777888888877765  234554   45667777777


Q ss_pred             ccC
Q 039394          133 LSN  135 (157)
Q Consensus       133 ls~  135 (157)
                      +.+
T Consensus       370 v~g  372 (419)
T KOG2120|consen  370 VFG  372 (419)
T ss_pred             ecc
Confidence            654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.23  E-value=0.24  Score=21.99  Aligned_cols=18  Identities=44%  Similarity=0.558  Sum_probs=11.3

Q ss_pred             cCCCEEecCCCccCCCCCh
Q 039394          102 TMLHALDLSRNQPIGKIPE  120 (157)
Q Consensus       102 ~~L~~L~l~~N~l~~~~p~  120 (157)
                      ++|+.|++++|++. .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45677777777766 4443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.23  E-value=0.24  Score=21.99  Aligned_cols=18  Identities=44%  Similarity=0.558  Sum_probs=11.3

Q ss_pred             cCCCEEecCCCccCCCCCh
Q 039394          102 TMLHALDLSRNQPIGKIPE  120 (157)
Q Consensus       102 ~~L~~L~l~~N~l~~~~p~  120 (157)
                      ++|+.|++++|++. .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45677777777766 4443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.02  E-value=0.034  Score=24.42  Aligned_cols=13  Identities=54%  Similarity=0.547  Sum_probs=5.2

Q ss_pred             CCCEEecCCCccC
Q 039394          103 MLHALDLSRNQPI  115 (157)
Q Consensus       103 ~L~~L~l~~N~l~  115 (157)
                      +|++|++++|++.
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4445555555443

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.63  E-value=0.8  Score=28.68  Aligned_cols=38  Identities=8%  Similarity=0.061  Sum_probs=17.5

Q ss_pred             chhcccccccc-ccccceeecCccCcCCCCCCEEEccCC
Q 039394           18 CSRYWQSLKVL-KSNHINGCVPIRLCYVRPVQVLDISYS   55 (157)
Q Consensus        18 ~~~~l~~L~~L-~~n~~~~~~p~~~~~l~~L~~L~l~~n   55 (157)
                      +|..+.+|+.+ -.+.+.......|..+++++.+.+..+
T Consensus         7 ~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~   45 (129)
T PF13306_consen    7 AFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN   45 (129)
T ss_dssp             TTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST
T ss_pred             HHhCCCCCCEEEECCCeeEeChhhccccccccccccccc
Confidence            45555566666 333445444556666767777777554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.36  E-value=1.3  Score=27.77  Aligned_cols=52  Identities=10%  Similarity=0.126  Sum_probs=27.3

Q ss_pred             cEEECcCCccccccCcchhcccccccc-ccccceeecCccCcCCCCCCEEEccC
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL-KSNHINGCVPIRLCYVRPVQVLDISY   54 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L-~~n~~~~~~p~~~~~l~~L~~L~l~~   54 (157)
                      +.+.+.. .+...-..+|..+.+++.+ -.+.+.......+..+++++.+.+..
T Consensus        15 ~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen   15 ESITFPN-TIKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             -EEEETS-T--EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS
T ss_pred             CEEEECC-CeeEeChhhcccccccccccccccccccceeeeecccccccccccc
Confidence            4455553 4553445667788788888 33345545556677787888888854

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=87.33  E-value=0.55  Score=21.20  Aligned_cols=15  Identities=27%  Similarity=0.383  Sum_probs=11.4

Q ss_pred             CCCCCEEEccCCcce
Q 039394           44 VRPVQVLDISYSSIL   58 (157)
Q Consensus        44 l~~L~~L~l~~n~~~   58 (157)
                      +++|++|+++.|+|+
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            356788888888875

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=84.70  E-value=0.75  Score=20.78  Aligned_cols=17  Identities=41%  Similarity=0.616  Sum_probs=11.4

Q ss_pred             CCCEEecCCCccCCCCCh
Q 039394          103 MLHALDLSRNQPIGKIPE  120 (157)
Q Consensus       103 ~L~~L~l~~N~l~~~~p~  120 (157)
                      +|+.|++++|++. .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            5677777777766 5554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=83.71  E-value=0.91  Score=20.67  Aligned_cols=14  Identities=57%  Similarity=0.555  Sum_probs=9.6

Q ss_pred             CCCCeEEccCCcce
Q 039394          126 GLLGVLSLSNNKLS  139 (157)
Q Consensus       126 ~~L~~L~ls~N~l~  139 (157)
                      ++|++||+++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            45677777777764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.22  E-value=0.064  Score=38.22  Aligned_cols=81  Identities=16%  Similarity=0.154  Sum_probs=48.4

Q ss_pred             cCcCCCCCCEEEccCCcceee------cceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCc
Q 039394           40 RLCYVRPVQVLDISYSSILGD------IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQ  113 (157)
Q Consensus        40 ~~~~l~~L~~L~l~~n~~~~~------~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~  113 (157)
                      ++....+.+.||++.|++...      +..+..++++.|.+.                 ..|..++....+..++...|.
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-----------------~~~~d~~q~~e~~~~~~~~n~   99 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-----------------FLPKDAKQQRETVNAASHKNN   99 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-----------------hChhhHHHHHHHHHHHhhccc
Confidence            455666777777777765311      114455666666665                 456666666666666666565


Q ss_pred             cCCCCChhhhcCCCCCeEEccCCcc
Q 039394          114 PIGKIPEGISQLGLLGVLSLSNNKL  138 (157)
Q Consensus       114 l~~~~p~~~~~l~~L~~L~ls~N~l  138 (157)
                      . ...|..++..+.++.++...|++
T Consensus       100 ~-~~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  100 H-SQQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             h-hhCCccccccCCcchhhhccCcc
Confidence            3 35666666666666666666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	157
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.7 bits (213), Expect = 2e-20
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 35/159 (22%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSIL 58
               +++                S+  L    N ++G +P  +  +  + +L++ ++ I 
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 59  GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
           G                                  IP ++  L  L+ LDLS N+  G+I
Sbjct: 670 G---------------------------------SIPDEVGDLRGLNILDLSSNKLDGRI 696

Query: 119 PEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASSYM 157
           P+ +S L +L  + LSNN LSG IP   + +T   + ++
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.6 bits (210), Expect = 5e-20
 Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 39/161 (24%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL 58
           +  L LS N LS  IP        L+ L    N + G +P  L YV+ ++ L + ++ + 
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479

Query: 59  GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
           G                                  IP+ +   T L+ + LS N+  G+I
Sbjct: 480 G---------------------------------EIPSGLSNCTNLNWISLSNNRLTGEI 506

Query: 119 PEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASS 155
           P+ I +L  L +L LSNN  SG IP+       L  LD ++
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 29/170 (17%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPI-RLCYVRPVQVLDISYSSI 57
           +  LDLS N     +P        L+ L   SN+ +G +P+  L  +R ++VLD+S++  
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

Query: 58  LGDI------IIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKI--DQLTMLHALDL 109
            G++      +  S++ L +    N+            F  PI   +  +    L  L L
Sbjct: 356 SGELPESLTNLSASLLTLDLSS--NN------------FSGPILPNLCQNPKNTLQELYL 401

Query: 110 SRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASS 155
             N   GKIP  +S    L  L LS N LSG IPS     +KL+ L    
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 22/163 (13%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSILG 59
           E+LD+S N  S  IP       +L+ L    N ++G     +     +++L+IS +  +G
Sbjct: 203 EFLDVSSNNFSTGIPFLGD-CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 60  DIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKID-QLTMLHALDLSRNQPIGK 117
            I  + +  LQ +   +N             F   IP  +      L  LDLS N   G 
Sbjct: 262 PIPPLPLKSLQYLSLAENK------------FTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 118 IPEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASS 155
           +P       LL  L+LS+N  SG++P         L+ LD S 
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.6 bits (171), Expect = 8e-15
 Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 26/169 (15%)

Query: 1   MEYLDLSDNQLSEEIPHC-SRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSI 57
           ++YL L++N+ + EIP   S    +L  L    NH  G VP        ++ L +S ++ 
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 58  LGDI---IIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTM-LHALDLSRN 112
            G++    ++ M  L+++    N          G      +P  +  L+  L  LDLS N
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEF-------SG-----ELPESLTNLSASLLTLDLSSN 378

Query: 113 QPIGKIPEGISQLGL--LGVLSLSNNKLSGKIPSG----TKLQTLDASS 155
              G I   + Q     L  L L NN  +GKIP      ++L +L  S 
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.0 bits (167), Expect = 3e-14
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 26/166 (15%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSILG 59
           ++LD+S N+LS +          LK+L   SN   G +P      + +Q L ++ +   G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTG 283

Query: 60  DI---IIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI 115
           +I   +  +   L  +    N          G      +P      ++L +L LS N   
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHF-------YG-----AVPPFFGSCSLLESLALSSNNFS 331

Query: 116 GKIP-EGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASS 155
           G++P + + ++  L VL LS N+ SG++P         L TLD SS
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 21/148 (14%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSILG 59
             L L  N L  EIP    Y ++L+ L    N + G +P  L     +  + +S + + G
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504

Query: 60  DI--IIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIG 116
           +I   I  + +L +++   NS            F   IP ++     L  LDL+ N   G
Sbjct: 505 EIPKWIGRLENLAILKLSNNS------------FSGNIPAELGDCRSLIWLDLNTNLFNG 552

Query: 117 KIPEGISQLGLLGVLSLSNNKLSGKIPS 144
            IP  + +        ++ N ++GK   
Sbjct: 553 TIPAAMFKQSGK----IAANFIAGKRYV 576

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.5 bits (158), Expect = 4e-13
 Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 28/168 (16%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRP-VQVLDISYSSIL 58
           + L++S NQ    IP      +SL+ L    N   G +P  L      +  LD+S +   
Sbjct: 250 KLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

Query: 59  GDI--IIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTK-IDQLTMLHALDLSRNQP 114
           G +     S   L+ +    N+         G      +P   + ++  L  LDLS N+ 
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNF-------SG-----ELPMDTLLKMRGLKVLDLSFNEF 355

Query: 115 IGKIPEGISQL-GLLGVLSLSNNKLSGKIPSG------TKLQTLDASS 155
            G++PE ++ L   L  L LS+N  SG I           LQ L   +
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.7 bits (148), Expect = 9e-12
 Identities = 34/163 (20%), Positives = 55/163 (33%), Gaps = 42/163 (25%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIR--LCYVRPVQVLDISYSSI 57
           E L LS++ ++  +        SL  L    N ++G V     L     ++ L++S +++
Sbjct: 80  ESLFLSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138

Query: 58  LGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK 117
                                               +     +L  L  LDLS N   G 
Sbjct: 139 DFPG-------------------------------KVSG-GLKLNSLEVLDLSANSISGA 166

Query: 118 IPEGISQLGLLG---VLSLSNNKLSGKIPSG--TKLQTLDASS 155
              G       G    L++S NK+SG +       L+ LD SS
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSS 209

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 93  PIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG------T 146
            + + +  LT L +L LS +   G +         L  L LS N LSG + +       +
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCS 126

Query: 147 KLQTLDASS 155
            L+ L+ SS
Sbjct: 127 GLKFLNVSS 135

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 104 LHALDLSRNQ---PIGKIPEGISQLGLLGVLSLSNNKLSGKIPS---GTKLQTLDASS 155
           + ++DLS          +   +  L  L  L LSN+ ++G +        L +LD S 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 81.4 bits (202), Expect = 2e-19
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 20/162 (12%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKV---LKSNHINGCVPIRLCYVRPVQVLDISYSSIL 58
             +    N++S  IP     +  L     +  N + G +P     +  +  +D+S + + 
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210

Query: 59  GDI--IIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI 115
           GD   +  S  + Q +   KNS                +  K+     L+ LDL  N+  
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNS------------LAFDLG-KVGLSKNLNGLDLRNNRIY 257

Query: 116 GKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASSYM 157
           G +P+G++QL  L  L++S N L G+IP G  LQ  D S+Y 
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 65.6 bits (161), Expect = 1e-13
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 93  PIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKL 148
           PIP  I +LT LH L ++     G IP+ +SQ+  L  L  S N LSG +P        L
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 149 QTLDASS 155
             +    
Sbjct: 152 VGITFDG 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.6 bits (153), Expect = 2e-12
 Identities = 30/161 (18%), Positives = 52/161 (32%), Gaps = 41/161 (25%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSILG 59
            YL ++   +S  IP      ++L  L    N ++G +P  +  +  +  +    + I G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 60  DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLH-ALDLSRNQPIGKI 118
                                             IP      + L  ++ +SRN+  GKI
Sbjct: 164 ---------------------------------AIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 119 PEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASS 155
           P   + L  L  + LS N L G            Q +  + 
Sbjct: 191 PPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.2 bits (152), Expect = 2e-12
 Identities = 34/146 (23%), Positives = 52/146 (35%), Gaps = 38/146 (26%)

Query: 4   LDLSDNQLS--EEIPHCSRYWQSLKVL---KSNHINGCVPIRLCYVRPVQVLDISYSSIL 58
           LDLS   L     IP        L  L     N++ G +P  +  +  +  L I+++++ 
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 59  GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
           G                                  IP  + Q+  L  LD S N   G +
Sbjct: 115 G---------------------------------AIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 119 PEGISQLGLLGVLSLSNNKLSGKIPS 144
           P  IS L  L  ++   N++SG IP 
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPD 167

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.7 bits (158), Expect = 4e-13
 Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 24/166 (14%)

Query: 2   EYLDLSDNQLSEEIPH-CSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL 58
           E+LD   + L +          ++L  L     H           +  ++VL ++ +S  
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 59  GDIIIVSMIDLQMVQK----KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQP 114
            + +     +L+ +      +  +            ++  PT  + L+ L  L++S N  
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQL------------EQLSPTAFNSLSSLQVLNMSHNNF 506

Query: 115 IGKIPEGISQLGLLGVLSLSNNKLSGKIPS-----GTKLQTLDASS 155
                     L  L VL  S N +            + L  L+ + 
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 27/160 (16%), Positives = 44/160 (27%), Gaps = 40/160 (25%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGD 60
            ++L+L + +  +      +   SLK L      G        +  ++ LD+S + +   
Sbjct: 306 WQHLELVNCKFGQFPTLKLK---SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL--- 359

Query: 61  IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPE 120
                                        FK          T L  LDLS N  +  +  
Sbjct: 360 ----------------------------SFKGCCSQSDFGTTSLKYLDLSFNG-VITMSS 390

Query: 121 GISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASS 155
               L  L  L   ++ L              L  LD S 
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 20/150 (13%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSILG 59
           + LDLS N L     +    +  L+VL      I          +  +  L ++ + I  
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 60  DIIIVSMIDLQMVQK----KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI 115
            + + +   L  +QK    + ++A +                I  L  L  L+++ N   
Sbjct: 91  -LALGAFSGLSSLQKLVAVETNLASL------------ENFPIGHLKTLKELNVAHNLIQ 137

Query: 116 G-KIPEGISQLGLLGVLSLSNNKLSGKIPS 144
             K+PE  S L  L  L LS+NK+     +
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 25/167 (14%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSILG 59
           + LDLS  ++        +    L  L    N I          +  +Q L    +++  
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 60  DIIIVSMIDLQMVQK----KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI 115
            +    +  L+ +++     N I               +P     LT L  LDLS N+  
Sbjct: 115 -LENFPIGHLKTLKELNVAHNLIQSF-----------KLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 116 GKIPEGISQLGLLGV----LSLSNNKLSGKIPS---GTKLQTLDASS 155
                 +  L  + +    L LS N ++   P      +L  L   +
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 23/155 (14%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG 59
             L L+ N +            SL+ L     ++       + +++ ++ L+++++ I  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 60  DIIIVSMIDLQMVQ----KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHA----LDLSR 111
             +     +L  ++      N I  I              T +  L  +      LDLS 
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSI------------YCTDLRVLHQMPLLNLSLDLSL 186

Query: 112 NQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGT 146
           N  +  I  G  +   L  L+L NN  S  +    
Sbjct: 187 NP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 15/70 (21%), Positives = 20/70 (28%), Gaps = 4/70 (5%)

Query: 90  FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG---- 145
            +            L  LDLSR +           L  L  L L+ N +           
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99

Query: 146 TKLQTLDASS 155
           + LQ L A  
Sbjct: 100 SSLQKLVAVE 109

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 31/161 (19%), Positives = 47/161 (29%), Gaps = 29/161 (18%)

Query: 3   YLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSI--LGD 60
           YLD   + + + + +C     S   L S  I         +    Q L++          
Sbjct: 266 YLDYYLDDIID-LFNCLTNVSSFS-LVSVTIERVKDFSYNF--GWQHLELVNCKFGQFPT 321

Query: 61  IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQ--PIGKI 118
           + + S+  L     K                         L  L  LDLSRN     G  
Sbjct: 322 LKLKSLKRLTFTSNKGGN----------------AFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 119 PEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASS 155
            +       L  L LS N +   + S      +L+ LD   
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 405

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 22/165 (13%), Positives = 54/165 (32%), Gaps = 14/165 (8%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKV------LKSNHINGCVPIRLCYVRPVQVLDISYS 55
           E+LDLS N++        R    + +      L  N +N   P     +R +  L +  +
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNN 210

Query: 56  SILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQ-- 113
               +++   +  L  ++    +  +         ++   + ++ L  L   +       
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLV--LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 114 -PIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--TKLQTLDASS 155
             +  I +  + L  +   SL +  +            Q L+  +
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 29/164 (17%), Positives = 50/164 (30%), Gaps = 39/164 (23%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSIL 58
           + +LDLS  QL +  P       SL+VL    N+           +  +QVLD S     
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL---- 527

Query: 59  GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
                            N I       +               + L  L+L++N      
Sbjct: 528 -----------------NHIMTSKKQELQHFP-----------SSLAFLNLTQNDFACTC 559

Query: 119 PEG--ISQLGLLGVLSLSNNKLSGKIPS---GTKLQTLDASSYM 157
                +  +     L +   ++    PS   G  + +L+ +  M
Sbjct: 560 EHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNITCQM 603

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.9 bits (156), Expect = 7e-13
 Identities = 23/170 (13%), Positives = 55/170 (32%), Gaps = 23/170 (13%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHING-------CVPIRLCYVRPVQVLD 51
           +  ++LS+NQ+S+           L  +    N +                    +  +D
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494

Query: 52  ISY---SSILGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHAL 107
           + +   + +  D    ++  L  +    NS +        +       + +    + +  
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF----PTQPLN---SSTLKGFGIRNQR 547

Query: 108 DLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--TKLQTLDASS 155
           D   N+ + + PEGI+    L  L + +N +   +       +  LD   
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITPNISVLDIKD 596

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 9e-12
 Identities = 16/161 (9%), Positives = 53/161 (32%), Gaps = 14/161 (8%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGDI 61
               + ++    E    +      +  +         ++   ++ +  +++     L  +
Sbjct: 209 RQFYMGNSPFVAENICEA---WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

Query: 62  --IIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQ-PIGK 117
              + ++ ++Q++    N       +                   +  + +  N      
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKDD----WQALADAPVGEKIQIIYIGYNNLKTFP 321

Query: 118 IPEGISQLGLLGVLSLSNNKLSGKIPS---GTKLQTLDASS 155
           +   + ++  LG+L    N+L GK+P+     KL +L+ + 
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAY 362

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 21/169 (12%), Positives = 54/169 (31%), Gaps = 29/169 (17%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSIL 58
           +    ++ +   + I   SR       +   SN+I   V   +  +  ++   +  S  +
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFV 219

Query: 59  GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
            + I  +  +      +                +    K D L  L  +++     + K+
Sbjct: 220 AENICEAWENENSEYAQQY--------------KTEDLKWDNLKDLTDVEVYNCPNLTKL 265

Query: 119 PEGISQLGLLGVLSLSNNKLSG------------KIPSGTKLQTLDASS 155
           P  +  L  + +++++ N+                 P G K+Q +    
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 8e-09
 Identities = 16/149 (10%), Positives = 38/149 (25%), Gaps = 14/149 (9%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHING----CVPIRLCYVRPVQVLDISYS 55
             L L     S  +P        L+VL   S+          P  +      +       
Sbjct: 84  TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143

Query: 56  SILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI 115
                 +           +++   +I   +  +  ++ I            +    N  I
Sbjct: 144 HYQKTFV-------DYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN-I 195

Query: 116 GKIPEGISQLGLLGVLSLSNNKLSGKIPS 144
             + + + +L  L    + N+    +   
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENIC 224

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 32/176 (18%), Positives = 55/176 (31%), Gaps = 33/176 (18%)

Query: 2   EYLDLSDNQLSEEIP---HCSRYWQSLKVLK--SNHINGCVPIRLCYV-RPVQVLDISY- 54
             L+   NQL  ++P           L  L    N I   +P   C     V+ L  ++ 
Sbjct: 333 GMLECLYNQLEGKLPAFGSEI----KLASLNLAYNQITE-IPANFCGFTEQVENLSFAHN 387

Query: 55  --SSILGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSR 111
               I       S+  +  +    N I  ++          P+     +   + +++LS 
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD-----PLDPTPFKGINVSSINLSN 442

Query: 112 NQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG------------TKLQTLDASS 155
           NQ      E  S    L  ++L  N L+  IP                L ++D   
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRF 497

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 28/172 (16%), Positives = 46/172 (26%), Gaps = 45/172 (26%)

Query: 1   MEYLDLSDNQLSEEIPHCS--RYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSS 56
           +E L  + N+L   IP+    +    +  +    N I                       
Sbjct: 379 VENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF----------DPLDP 427

Query: 57  ILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQ--- 113
                I VS I+L      N I+                      + L +++L  N    
Sbjct: 428 TPFKGINVSSINLS----NNQISKF------------PKELFSTGSPLSSINLMGNMLTE 471

Query: 114 ----PIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG------TKLQTLDASS 155
                +    E      LL  + L  NKL+  +           L  +D S 
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSY 522

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 8/66 (12%)

Query: 98  IDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG--------KIPSGTKLQ 149
           ++    +  L L      G++P+ I QL  L VL+L ++             I +    +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 150 TLDASS 155
                 
Sbjct: 137 QKQKMR 142

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 17/166 (10%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGC--VPIRLCYVRPVQVLDISYSSI 57
             + LS N+  +   +      SL+ L      +      P     +R + +LD+S ++I
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

Query: 58  LGDIIIVSMIDLQMVQK----KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQ 113
              I    +  L+ ++      N++A +                +  L+ LH L+L  N 
Sbjct: 493 AN-INDDMLEGLEKLEILDLQHNNLARLW----KHANPGGPIYFLKGLSHLHILNLESNG 547

Query: 114 PIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASS 155
                 E    L  L ++ L  N L+    S       L++L+   
Sbjct: 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 22/166 (13%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSI-- 57
           + L+L  N+LS+       +  +L  L   SN I           + +  LD+S++ +  
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 58  LGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIG 116
                 V + +LQ +    N I  +                I   + L  L+LS NQ   
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALK----------SEELDIFANSSLKKLELSSNQIKE 185

Query: 117 KIPEGISQLGLLGVLSLSNNKLSGKIP-------SGTKLQTLDASS 155
             P     +G L  L L+N +L   +        + T ++ L  S+
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 26/170 (15%), Positives = 60/170 (35%), Gaps = 27/170 (15%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVL-----------KSNHINGCVPIRLCYVRPVQVL 50
           EY  L  N +     H      +++ L               +         +++ ++ L
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334

Query: 51  DISYSSILGDI--IIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHAL 107
           ++  + I G    +   +I+L+ +    +  ++  +    E F           + LH L
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT--NETFVSL------AHSPLHIL 386

Query: 108 DLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
           +L++N+      +  S LG L VL L  N++  ++          +  + 
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 24/169 (14%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK-----SNHINGCVPIRLCYVRPVQVLDISYSS 56
           + L L    L   +      +Q L+ L      +N+I       L  +  +++LD+ +++
Sbjct: 457 QRLMLRRVALKN-VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515

Query: 57  ILGDIIIVSMIDLQMVQKKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLS 110
           +       + +            +  +  +  L      F          L  L  +DL 
Sbjct: 516 L-------ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568

Query: 111 RNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDAS 154
            N          +    L  L+L  N ++             L  LD  
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 31/165 (18%), Positives = 51/165 (30%), Gaps = 34/165 (20%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL 58
           +  LDLS N L+        +   L+    + N+I       L  +  V+ L++  S   
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 59  GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
             I               S+  I                   L  L  L++  N   G  
Sbjct: 310 QSI------------SLASLPKI------------DDFSFQWLKCLEHLNMEDNDIPGIK 345

Query: 119 PEGISQLGLLGVLSLSNNKLSGKIPSG--------TKLQTLDASS 155
               + L  L  LSLSN+  S +  +         + L  L+ + 
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 27/163 (16%), Positives = 48/163 (29%), Gaps = 40/163 (24%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRP---VQVLDISYSS 56
           + L+LS NQ+ E  P C      L  L   +  +   +  +LC       ++ L +S   
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN-- 231

Query: 57  ILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIG 116
                              + ++  +      L          + T L  LDLS N    
Sbjct: 232 -------------------SQLSTTSNTTFLGL----------KWTNLTMLDLSYNNLNV 262

Query: 117 KIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASS 155
              +  + L  L    L  N +             ++ L+   
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 36/174 (20%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYV----RPVQVLDISY- 54
           E+L++ DN +     +      +LK L   ++  +        +V     P+ +L+++  
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

Query: 55  ------SSILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTK-IDQLTMLHAL 107
                 S     +  + ++DL +    N I             + +  +    L  +  +
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGL----NEI------------GQELTGQEWRGLENIFEI 435

Query: 108 DLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG--KIPSG----TKLQTLDASS 155
            LS N+ +       + +  L  L L    L      PS       L  LD S+
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 28/160 (17%), Positives = 43/160 (26%), Gaps = 39/160 (24%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG 59
             L+L+ NQL          +  L  L    N I+   P     +  ++VL++ ++ +  
Sbjct: 28  TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87

Query: 60  DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP 119
                                                     T L  L L  N       
Sbjct: 88  ---------------------------------LSDKTFAFCTNLTELHLMSNSIQKIKN 114

Query: 120 EGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASS 155
               +   L  L LS+N LS            LQ L  S+
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 22/165 (13%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG 59
           + LDL+   LSE +P       +LK L   +N       I       +  L I  ++   
Sbjct: 281 QELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339

Query: 60  DIIIVSMIDLQMVQK----KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI 115
           ++    + +L+ +++     + I   +              ++  L+ L +L+LS N+P+
Sbjct: 340 ELGTGCLENLENLRELDLSHDDIETSD----------CCNLQLRNLSHLQSLNLSYNEPL 389

Query: 116 GKIPEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASS 155
               E   +   L +L L+  +L  K           L+ L+ S 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 31/172 (18%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLKS-----NHINGCVPIRLCYVRPVQVLDISY- 54
           +  LDLS + +      C+   ++L  L+S     N               +++LD+++ 
Sbjct: 352 LRELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410

Query: 55  --SSILGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSR 111
                       ++  L+++    + + I +                D L  L  L+L  
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISS------------EQLFDGLPALQHLNLQG 458

Query: 112 NQ---PIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGT-----KLQTLDASS 155
           N       +    +  LG L +L LS   LS  I          +  +D S 
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSH 509

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 31/167 (18%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK----SNHINGCVPIRLCYVRPVQVLDISYSSI 57
           + LD  +N +           Q    L      N I   +          Q L+   +  
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQN 214

Query: 58  LGDII-------IVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLS 110
           L  I        I S+       +      I+          P   +      + +++L 
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTF--EDMDDEDIS----------PAVFEGLCEMSVESINLQ 262

Query: 111 RNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG----TKLQTLD 152
           ++     I          L  L L+   LS ++PSG    + L+ L 
Sbjct: 263 KHY-FFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLV 307

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 43/163 (26%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIR---LCYVRPVQVLDISYSS 56
           + L+LS + L            +L+ L    NH       +   L  +  +++L +S+  
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF-- 485

Query: 57  ILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIG 116
                                ++ I                   L M++ +DLS N+   
Sbjct: 486 -------------------CDLSSI------------DQHAFTSLKMMNHVDLSHNRLTS 514

Query: 117 KIPEGISQLGLLGVLSLSNNKLSGKIPS----GTKLQTLDASS 155
              E +S L  +  L+L++N +S  +PS     ++ +T++   
Sbjct: 515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 20/151 (13%), Positives = 40/151 (26%), Gaps = 20/151 (13%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG 59
           E L+ S N L            +L  L      I             +  L ++ + ++ 
Sbjct: 36  ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95

Query: 60  DIIIVSMIDLQMVQK----KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI 115
            +   ++   + ++     +  I+ I                +     L +L L  N   
Sbjct: 96  -MAETALSGPKALKHLFFIQTGISSI------------DFIPLHNQKTLESLYLGSNHIS 142

Query: 116 GKIPEGISQLGLLGVLSLSNNKLSGKIPSGT 146
                       L VL   NN +   +    
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHY-LSKED 172

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 100 QLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASS 155
           +L  L  LDL+R Q      +       L  L L+ N L     +       L+ L    
Sbjct: 55  RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 9e-11
 Identities = 24/176 (13%), Positives = 55/176 (31%), Gaps = 35/176 (19%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHI-------NGCVPIRLCYVRPVQVLD 51
              + LS N++ +           +  +   +N +                    +  +D
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 52  ISY---SSILGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHAL 107
           + +   +S+  D    ++  L  +    N  +               PT+    + L A 
Sbjct: 735 LRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-------------PTQPLNSSQLKAF 781

Query: 108 DLSR------NQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--TKLQTLDASS 155
            +        N+ + + P GI+    L  L + +N +  K+      +L  LD + 
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQLYILDIAD 836

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 22/157 (14%), Positives = 44/157 (28%), Gaps = 20/157 (12%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGC------VPIRLCYVRPVQVLDISY 54
           +   DL  + ++           S   LK   I         +   +  +  +Q++  + 
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 55  SSILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQP 114
           S    D I V   D      K                         L  L  ++L     
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQY--------------ENEELSWSNLKDLTDVELYNCPN 503

Query: 115 IGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTL 151
           + ++P+ +  L  L  L+++ N+             L
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 4e-08
 Identities = 31/175 (17%), Positives = 48/175 (27%), Gaps = 34/175 (19%)

Query: 2   EYLDLSDNQLSE--EIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRP-VQVLDISY-- 54
             LD   N++               L  LK   N I   +P   C     V+ L  S+  
Sbjct: 576 GLLDCVHNKVRHLEAFGTNV----KLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNK 630

Query: 55  -SSILGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRN 112
              I       S+  +  V    N I      +              +      + LS N
Sbjct: 631 LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI-------SCSMDDYKGINASTVTLSYN 683

Query: 113 QPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG------------TKLQTLDASS 155
           +      E  +    +  + LSNN ++  IP                L T+D   
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRF 737

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 4e-08
 Identities = 17/185 (9%), Positives = 51/185 (27%), Gaps = 36/185 (19%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGD 60
           ++ +  +++  + +                        +    ++ +  +++     +  
Sbjct: 450 LQIIYFANSPFTYDNIAVD---WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

Query: 61  I--IIVSMIDLQMVQ-KKNSIAIINVVVVG----------------------ELFKRPIP 95
           +   +  + +LQ +    N       +                          L + P  
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566

Query: 96  TKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQT 150
             + ++  L  LD   N+ +  +         L  L L  N++   IP        +++ 
Sbjct: 567 ASLQKMVKLGLLDCVHNK-VRHLEA-FGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEG 623

Query: 151 LDASS 155
           L  S 
Sbjct: 624 LGFSH 628

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 19/152 (12%), Positives = 44/152 (28%), Gaps = 6/152 (3%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG 59
             L L+       +P        LKVL   ++       +         + +     I  
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 60  DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP 119
               + +   Q +   + +   + +      K         L      +L+ N+ I  I 
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQ--DAINRNPEMKPIKKDSRISLKDTQIGNLT-NR-ITFIS 441

Query: 120 EGISQLGLLGVLSLSNNKLSGKIPSGTKLQTL 151
           + I +L  L ++  +N+  +    +       
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN 473

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 13/63 (20%), Positives = 22/63 (34%)

Query: 94  IPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDA 153
               +D    +  L L+     G++P+ I QL  L VLS   +  +         +    
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 154 SSY 156
            S 
Sbjct: 375 MSE 377

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 25/167 (14%)

Query: 1   MEYLDLSDNQLSEEIPHCS-RYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSI 57
           +++LD   + L       +    + L  L     +           +  +  L ++ +S 
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 58  LGDIIIVSMIDLQMVQK----KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQ 113
             + +     +   +      K  +  I                 D L  L  L++S N 
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQI------------SWGVFDTLHRLQLLNMSHNN 508

Query: 114 PIGKIPEG-ISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASS 155
            +  +     +QL  L  L  S N++             L   + ++
Sbjct: 509 -LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 28/167 (16%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHIN--GCVPIRLCYVRPVQVLDISYSSI 57
           + L L+ N+ S  I        SL  L    N ++  GC          ++ LD+S++  
Sbjct: 331 KSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 58  LGDIIIVSMIDLQMVQK----KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQ 113
           +  I+  + + L+ +Q      +++  +              +    L  L  LD+S   
Sbjct: 389 I--IMSANFMGLEELQHLDFQHSTLKRV-----------TEFSAFLSLEKLLYLDISYTN 435

Query: 114 PIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASS 155
                      L  L  L ++ N       S      T L  LD S 
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 21/163 (12%), Positives = 54/163 (33%), Gaps = 11/163 (6%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKV------LKSNHINGCVPIRLCYVRPVQVLDISYS 55
            ++DLS N +     +  ++ +          +  N I+  +  +      +  L +  +
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGN 214

Query: 56  SILGDIIIVSMIDLQMVQK-KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQP 114
               +I+   + +L  +   +  +         E+F+  I   +  +T+     L+    
Sbjct: 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE-FRLTYTND 273

Query: 115 IGKIPEGISQLGLLGVLSLSNNKLSG--KIPSGTKLQTLDASS 155
                     L  +  +SL+   +     +P   K Q+L    
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIR 316

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 34/168 (20%), Positives = 51/168 (30%), Gaps = 27/168 (16%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSI-- 57
           ++LDLS  ++             L  L    N I    P     +  ++ L    + +  
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 58  LGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIG 116
           L    I  +I L+ +    N I               +P     LT L  +DLS N  I 
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSC-----------KLPAYFSNLTNLVHVDLSYNY-IQ 166

Query: 117 KIPEGISQL-----GLLGVLSLSNNKLSGKIPSGT----KLQTLDASS 155
            I     Q       +   L +S N +   I        KL  L    
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRG 213

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 6/60 (10%)

Query: 101 LTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASS 155
            + L  LDLSR +      +    L  L  L L+ N +      G     T L+ L A  
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVE 113

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 37/183 (20%), Positives = 57/183 (31%), Gaps = 33/183 (18%)

Query: 2   EYLDLSDNQLSEEIP-HCSRYWQSLKVLKSNHINGCVPIRLCYVRP----------VQVL 50
             L L  N  S  I   C +    L V +           L    P          +   
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 51  DISYSSILGDIIIV--SMIDLQMVQ-KKNSIAIINVVVVGELFK---------RPIPTKI 98
            ++Y++   D I+    + ++  +     SI  +  V     ++         +  PT  
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL- 325

Query: 99  DQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP------SGTKLQTLD 152
             L  L +L L+ N+  G I      L  L  L LS N LS              L+ LD
Sbjct: 326 -DLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 153 ASS 155
            S 
Sbjct: 383 LSF 385

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 32/148 (21%), Positives = 49/148 (33%), Gaps = 33/148 (22%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGC-VPIRLCYVRPVQVLDISYSSIL 58
           E L   + +L+           +LK L    N I+ C +P     +  +  +D+SY    
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY---- 162

Query: 59  GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
                            N I  I V  +  L + P         +  +LD+S N  I  I
Sbjct: 163 -----------------NYIQTITVNDLQFLRENPQ--------VNLSLDMSLNP-IDFI 196

Query: 119 PEGISQLGLLGVLSLSNNKLSGKIPSGT 146
            +   Q   L  L+L  N  S  I    
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTC 224

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 29/164 (17%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISY---SS 56
           E L  ++N +S  +       Q  K +   +N I     +       VQ LD+      +
Sbjct: 102 ETLHAANNNISR-VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 57  ILGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI 115
           +    +  S   L+ +  + N I  +     G++              L  LDLS N+ +
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVK----GQVV----------FAKLKTLDLSSNK-L 203

Query: 116 GKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASS 155
             +         +  +SL NNKL   I         L+  D   
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 22/162 (13%), Positives = 60/162 (37%), Gaps = 29/162 (17%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG 59
           +   ++D+ L + +    +   ++K L    N ++      L     +++L++S + +  
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

Query: 60  DIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
            + + S+  L+ +    N +                  ++     +  L  + N  I ++
Sbjct: 73  TLDLESLSTLRTLDLNNNYV-----------------QELLVGPSIETLHAANNN-ISRV 114

Query: 119 PEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASS 155
                Q      + L+NNK++  +        +++Q LD   
Sbjct: 115 SCSRGQ--GKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKL 153

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 40/142 (28%)

Query: 1   MEYLDLSDNQLSE-EIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSI 57
           ++YLDL  N++        +    +L+ L    N I   V  ++ + + ++ LD+S    
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVVFAK-LKTLDLSS--- 200

Query: 58  LGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK 117
                             N +A              +  +      +  + L  N+ +  
Sbjct: 201 ------------------NKLAF-------------MGPEFQSAAGVTWISLRNNK-LVL 228

Query: 118 IPEGISQLGLLGVLSLSNNKLS 139
           I + +     L    L  N   
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 29/164 (17%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISY---SS 56
           E L  ++N +S  +       Q  K +   +N I     +       VQ LD+      +
Sbjct: 102 ETLHAANNNISR-VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 57  ILGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI 115
           +    +  S   L+ +  + N I  +     G++              L  LDLS N+ +
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVK----GQVV----------FAKLKTLDLSSNK-L 203

Query: 116 GKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASS 155
             +         +  +SL NNKL   I         L+  D   
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 8e-07
 Identities = 21/162 (12%), Positives = 59/162 (36%), Gaps = 29/162 (17%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG 59
           +   ++D+ L + +    +   ++K L    N ++      L     +++L++S + +  
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

Query: 60  DIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
            + + S+  L+ +    N +                  ++     +  L  + N  I ++
Sbjct: 73  TLDLESLSTLRTLDLNNNYV-----------------QELLVGPSIETLHAANNN-ISRV 114

Query: 119 PEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASS 155
                       + L+NNK++  +        +++Q LD   
Sbjct: 115 SCSR--GQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKL 153

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.0 bits (96), Expect = 5e-05
 Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 45/163 (27%)

Query: 1   MEYLDLSDNQLSE-EIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSI 57
           ++YLDL  N++        +    +L+ L    N I   V  ++ + + ++ LD+S    
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVVFAK-LKTLDLSS--- 200

Query: 58  LGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK 117
                             N +A              +  +      +  + L  N+ +  
Sbjct: 201 ------------------NKLAF-------------MGPEFQSAAGVTWISLRNNK-LVL 228

Query: 118 IPEGISQLGLLGVLSLSNNKLSGKIP-----SGTKLQTLDASS 155
           I + +     L    L  N               ++QT+   +
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 94  IPTKIDQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TK 147
           +P     L  L  LD+S N+ +  +P G    LG L  L L  N+L   +P G      K
Sbjct: 92  LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPK 149

Query: 148 LQTLD 152
           L+ L 
Sbjct: 150 LEKLS 154

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.2 bits (102), Expect = 8e-06
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
             L +L  LDLS NQ +  +P     L  L VL +S N+L+  +P G      +LQ L 
Sbjct: 74  GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELY 130

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 7/59 (11%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSGT----KLQTLD 152
                L  L L+ N  + ++P G+ + L  L  L L  N L   IP G      L    
Sbjct: 145 TPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAF 201

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 94  IPTKIDQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TK 147
           +P ++     L  +DLS N+ I  +     S +  L  L LS N+L   IP         
Sbjct: 46  VPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKS 103

Query: 148 LQTLD 152
           L+ L 
Sbjct: 104 LRLLS 108

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTL 151
             +T L  L LS N+ +  IP      L  L +LSL  N +S  +P G     + L  L
Sbjct: 75  SNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHL 131

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 30/178 (16%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGC----VPIRLCYVRPVQVLDISY--- 54
           E+LDLS N LS     CS+       LK   ++      +      +  ++ LD  +   
Sbjct: 350 EFLDLSRNGLSF-KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408

Query: 55  SSILGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGEL------------FKRPIPTKI-DQ 100
             +    + +S+ +L  +        +    +   L            F+      I  +
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 101 LTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
           L  L  LDLS+ Q + ++     + L  L VL++++N+L   +P G     T LQ + 
Sbjct: 469 LRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIW 524

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 23/161 (14%), Positives = 45/161 (27%), Gaps = 20/161 (12%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGD 60
           +    L    +   +   S Y    + L+  +           ++ ++ L  + +     
Sbjct: 284 VSSFSLVSVTIER-VKDFS-YNFGWQHLELVN-CKFGQFPTLKLKSLKRLTFTSNKGGNA 340

Query: 61  IIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP 119
              V +  L+ +   +N ++                      T L  LDLS N  +  + 
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGC----------CSQSDFGTTSLKYLDLSFNG-VITMS 389

Query: 120 EGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASS 155
                L  L  L   ++ L              L  LD S 
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 8/67 (11%)

Query: 95  PTKIDQLTMLHALDLSRNQPIGKIPEG-ISQLGLLGVLSLSNNKLSGKIPSG-----TKL 148
                    L  LDLSR + I  I +G    L  L  L L+ N +   +  G     + L
Sbjct: 45  SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSL 102

Query: 149 QTLDASS 155
           Q L A  
Sbjct: 103 QKLVAVE 109

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 15/151 (9%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISY---SS 56
             L L+ N +            SL+ L     ++       + +++ ++ L++++    S
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 57  ILGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI 115
                   ++ +L+ +    N I  I    +  L + P+        +  +LDLS N  +
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL--------LNLSLDLSLNP-M 189

Query: 116 GKIPEGISQLGLLGVLSLSNNKLSGKIPSGT 146
             I  G  +   L  L+L NN  S  +    
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 37/168 (22%), Positives = 58/168 (34%), Gaps = 27/168 (16%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSI-- 57
           + LDLS  ++        +    L  L    N I          +  +Q L    +++  
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 58  LGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIG 116
           L +  I  +  L+ +    N I               +P     LT L  LDLS N+ I 
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSF-----------KLPEYFSNLTNLEHLDLSSNK-IQ 162

Query: 117 KIPEGI----SQLGLLGV-LSLSNNKLSGKIPSGT----KLQTLDASS 155
            I         Q+ LL + L LS N ++  I  G     +L  L   +
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRN 209

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 29/141 (20%)

Query: 22  WQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSI-----LGDIIIVSMIDLQMVQKKN 76
             +      +       +       V+VL +++  +     L  +++V+ +DL      N
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLS----HN 473

Query: 77  SIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNN 136
            +             R +P  +  L  L  L  S N  +  +  G++ L  L  L L NN
Sbjct: 474 RL-------------RALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNN 518

Query: 137 KLS-----GKIPSGTKLQTLD 152
           +L        + S  +L  L+
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLN 539

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 4e-07
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 98  IDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS--GKIPSGTKLQTLDASS 155
           ++QL ++  LDLS N+ +  +P  ++ L  L VL  S+N L     + +  +LQ L   +
Sbjct: 459 LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN 517

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 34/160 (21%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG 59
           +++ +    L  E+P   + +  L+ L    N +   +P  +  +  ++ L I     L 
Sbjct: 107 QHMTIDAAGL-MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT 164

Query: 60  DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP 119
           ++                           L       +   L  L +L L     I  +P
Sbjct: 165 EL------------------------PEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLP 199

Query: 120 EGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASS 155
             I+ L  L  L + N+ LS  +        KL+ LD   
Sbjct: 200 ASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRG 238

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 25/144 (17%), Positives = 59/144 (40%), Gaps = 21/144 (14%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSILG 59
           + L L    +   +P      Q+LK LK  ++ ++  +   + ++  ++ LD+   + L 
Sbjct: 186 QSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALR 243

Query: 60  DI--IIVSMIDLQM--VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI 115
           +   I      L+   ++  +++               +P  I +LT L  LDL     +
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNL-------------LTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 116 GKIPEGISQLGLLGVLSLSNNKLS 139
            ++P  I+QL    ++ +  +  +
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 94  IPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQ 149
            P +  +L+ L  + +     + ++P+ + Q   L  L+L+ N L   +P+      +L+
Sbjct: 96  FPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153

Query: 150 TLDASS 155
            L   +
Sbjct: 154 ELSIRA 159

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 22/171 (12%), Positives = 49/171 (28%), Gaps = 56/171 (32%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGC----VPIRLCYVRPVQVLDISYSSI 57
             L+L    L  + P  +     L+ +    I+      +P  +     ++ L ++ + +
Sbjct: 84  VALELRSVPL-PQFPDQAFRLSHLQHM---TIDAAGLMELPDTMQQFAGLETLTLARNPL 139

Query: 58  LGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK 117
                                             R +P  I  L  L  L +     + +
Sbjct: 140 ----------------------------------RALPASIASLNRLRELSIRACPELTE 165

Query: 118 IPEGISQLGLLG---------VLSLSNNKLSGKIPSG----TKLQTLDASS 155
           +PE ++     G          L L    +   +P+       L++L   +
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRN 215

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 24/166 (14%), Positives = 61/166 (36%), Gaps = 26/166 (15%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLC-YVRPVQVLDISYSSIL 58
             L +    L  ++       + +K +   ++ +   VP     +++ ++ LD+S + + 
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM- 346

Query: 59  GDIIIVSMIDLQMVQK-------KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSR 111
            +  + +                +N +  +          +     +  L  L +LD+SR
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSM----------QKTGEILLTLKNLTSLDISR 396

Query: 112 NQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--TKLQTLDASS 155
           N     +P+       +  L+LS+  +   + +     L+ LD S+
Sbjct: 397 NT-FHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSN 440

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 25/166 (15%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCY-VRPVQVLDISYSSI- 57
           + LDLS N+++       R   +L+VL   S+ IN  +     Y +  ++ LD+S + + 
Sbjct: 29  KSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 58  -LGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI 115
            L       +  L+ +    N    +            + +    LT L  L +   +  
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTL-----------GVTSLFPNLTNLQTLRIGNVETF 136

Query: 116 GKIPEG-ISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASS 155
            +I     + L  L  L +    L     S        +  L    
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHL 181

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 51/161 (31%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSILG 59
             LD+S N        C    + ++ L   S  I     ++ C  + ++VLD+S      
Sbjct: 390 TSLDISRNTFHPMPDSCQW-PEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSN----- 440

Query: 60  DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP 119
                           N++   ++                 L  L  L +SRN+ +  +P
Sbjct: 441 ----------------NNLDSFSL----------------FLPRLQELYISRNK-LKTLP 467

Query: 120 EGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASS 155
           +  S   +L V+ +S N+L   +P G     T LQ +   +
Sbjct: 468 DA-SLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHT 506

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.2 bits (112), Expect = 4e-07
 Identities = 35/159 (22%), Positives = 55/159 (34%), Gaps = 45/159 (28%)

Query: 2   EYLDLSDNQLSEEIPH----CSRYWQSLKVL-----KSNHINGCVPIRLCYVRPVQVLDI 52
             LDLSDN    E       C   + +L+VL          +G           +Q LD+
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235

Query: 53  SYSSILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRN 112
           S+                     NS+                    D  + L++L+LS  
Sbjct: 236 SH---------------------NSLRDA-----------AGAPSCDWPSQLNSLNLSFT 263

Query: 113 QPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTL 151
             + ++P+G+     L VL LS N+L    PS  +L  +
Sbjct: 264 G-LKQVPKGLPAK--LSVLDLSYNRLDR-NPSPDELPQV 298

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 29/166 (17%), Positives = 51/166 (30%), Gaps = 37/166 (22%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQ----SLKVLKSNHIN-GCVPIRLCYV-RPVQVLDISY 54
           +  L+L +   +      +   Q     LKVL     +          V   +  LD+S 
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 55  SSILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQP 114
           +  LG+  ++S +                           P K   L +L   +     P
Sbjct: 183 NPELGERGLISAL--------------------------CPLKFPTLQVLALRNAGMETP 216

Query: 115 IGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASS 155
            G      +    L  L LS+N L     +      ++L +L+ S 
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 9e-07
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 9/66 (13%)

Query: 94  IPTKI-DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----T 146
           +P  I  +L  L  L ++ N+ +  +P G+  QL  L  L L  N+L   +P       T
Sbjct: 76  LPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLT 133

Query: 147 KLQTLD 152
           KL  L 
Sbjct: 134 KLTYLS 139

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 9/66 (13%)

Query: 94  IPTKI-DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----T 146
           +P ++ D LT L  L L  N+ +  +P+G+  +L  L  L L NN+L  ++P G     T
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLT 181

Query: 147 KLQTLD 152
           +L+TL 
Sbjct: 182 ELKTLK 187

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
            +LT L  L L+ N+ +  +P GI  +L  L  L +++NKL   +P G       L  L 
Sbjct: 58  HRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELR 115

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 35/160 (21%), Positives = 53/160 (33%), Gaps = 28/160 (17%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILG- 59
           +  LDLS N   E +        +   ++S  ++                D    +  G 
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS-NSYNMGSSFGHTNFKDPDNFTFKGL 272

Query: 60  DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKI-DQLTMLHALDLSRNQPIGKI 118
           +   V   DL     K+ I  +                +    T L  L L++N+ I KI
Sbjct: 273 EASGVKTCDLS----KSKIFAL-------------LKSVFSHFTDLEQLTLAQNE-INKI 314

Query: 119 PEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
            +     L  L  L+LS N L   I S       KL+ LD
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLD 353

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 7/64 (10%)

Query: 95  PTKIDQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKL 148
            T   +L  L  L + +  P   I       L  L +L L  N+   ++ +G       L
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANL 105

Query: 149 QTLD 152
           + L 
Sbjct: 106 EVLT 109

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
             LT L  L+LS+N  +G I   +   L  L VL LS N +   +          L+ L 
Sbjct: 320 WGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELA 377

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 33/200 (16%), Positives = 60/200 (30%), Gaps = 51/200 (25%)

Query: 2   EYLDLSDNQLSEEIPH----------------------CSRYWQSLKV-------LKSNH 32
           E L L DN + +  P                       C     + +        L S  
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191

Query: 33  INGCVPIRLCYVRP--------VQVLDISYSSI--LGDIIIVSMIDLQMVQ--KKNSIAI 80
           +       L + +         +  LD+S +             I    +Q    ++   
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 81  INVVVVGELFKRPIPTKIDQLTM--LHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNK 137
           +        FK P       L    +   DLS+++ I  + + + S    L  L+L+ N+
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNE 310

Query: 138 LSGKIPSG-----TKLQTLD 152
           ++ KI        T L  L+
Sbjct: 311 IN-KIDDNAFWGLTHLLKLN 329

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
           + L  L  LDLS N  I  + +     L  L  L+L  N+L   +P G     T LQ + 
Sbjct: 344 ENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIW 401

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 37.4 bits (87), Expect = 9e-04
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 7/61 (11%)

Query: 99  DQLTMLHALDLSRNQ-PIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTL 151
           + L  L  L L++       +       L  L +L L +N +    P+       +   L
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159

Query: 152 D 152
           D
Sbjct: 160 D 160

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 29/158 (18%)

Query: 4   LDLSDNQLS---EEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSI--L 58
            +   N +S    +       W+   +   N       ++ C +     L ++  ++  L
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL 74

Query: 59  GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
            D +   +  L++   +N++               +P     L     LD   N+ +  +
Sbjct: 75  PDNLPPQITVLEI--TQNAL-------------ISLPELPASLE---YLDACDNR-LSTL 115

Query: 119 PEGISQLGLLGVLSLSNNKLSGKIPSG-TKLQTLDASS 155
           PE  +    L  L + NN+L+  +P     L+ ++A +
Sbjct: 116 PELPAS---LKHLDVDNNQLT-MLPELPALLEYINADN 149

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 94  IPTKIDQLTML----HALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQ 149
           +P    +               N+ I  IPE I  L     + L +N LS +I      Q
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253

Query: 150 TL 151
           T 
Sbjct: 254 TA 255

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 10/62 (16%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGISQLG----LLGVLSLSNNKLSGKIPSG----TKLQT 150
           +    L ALD+S N  +  +P    +               N+++  IP          T
Sbjct: 177 ELPESLEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT 234

Query: 151 LD 152
           + 
Sbjct: 235 II 236

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
           D LT L  L L+ NQ +  +P G+   L  L  L L  N+L   +PSG     TKL+ L 
Sbjct: 80  DDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELR 137

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
           D LT L  L L  NQ +  +P G+  +L  L  L L+ N+L   IP+G     T LQTL 
Sbjct: 104 DHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLS 161

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
            +L  L  L+L RNQ +  I          +  L L  NK+  +I +       +L+TL+
Sbjct: 51  GRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLN 108

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTL 151
           +  + +  L L  N+ I +I   +   L  L  L+L +N++S  +  G       L +L
Sbjct: 75  EGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSL 131

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 8/63 (12%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
                L  LDLSR + I  I +G    L  L  L L+ N +   +  G     + LQ L 
Sbjct: 49  FSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 106

Query: 153 ASS 155
           A  
Sbjct: 107 AVE 109

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
             L+ L  L L+ N  I  +  G  S L  L  L      L+  + +        L+ L+
Sbjct: 73  QSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELN 130

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
            +L  L  ++ S N+ I  I EG       +  + L++N+L   +          L+TL 
Sbjct: 54  KKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLM 111

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 8/60 (13%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
           +  + ++ + L+ N+ +  +   +   L  L  L L +N+++  + +      + ++ L 
Sbjct: 78  EGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLS 135

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 94  IPTKI-DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSGT----- 146
           +  K+   L  L  L L  N+ I  +       L  + +LSL +N+++  +  G      
Sbjct: 96  VQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLH 153

Query: 147 KLQTL 151
            L TL
Sbjct: 154 SLSTL 158

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 29/167 (17%)

Query: 2   EYLDLSDNQLSEEIPHCS----RYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSI 57
             L L    ++  I   S       + L+ +        +     Y   +  L I++ ++
Sbjct: 179 IVLRLRHLNINA-IRDYSFKRLYRLKVLE-ISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236

Query: 58  --LGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQP 114
             +  + +  ++ L+ +    N I+ I     G +          +L  L  + L   Q 
Sbjct: 237 TAVPYLAVRHLVYLRFLNLSYNPISTIE----GSMLH--------ELLRLQEIQLVGGQ- 283

Query: 115 IGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSGT-----KLQTLDASS 155
           +  +       L  L VL++S N+L+  +          L+TL   S
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 27/162 (16%), Positives = 63/162 (38%), Gaps = 25/162 (15%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIR-LCYVRPVQVLDISYSSI- 57
             LD+S+N++   + +  +   +LK L+   N +   +  R    +  ++ L +   ++ 
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT 165

Query: 58  -LGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI 115
            +    +  +  L +++ +  +I  I        FKR        L  L  L++S    +
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIR----DYSFKR--------LYRLKVLEISHWPYL 213

Query: 116 GKIPEGISQLGLLGVLSLSNNKLSGKIPSGT-----KLQTLD 152
             +         L  LS+++  L+  +P         L+ L+
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLN 254

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 25/162 (15%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSI-- 57
           E L+L++N +S   P       +L+ L   SN +          +  +  LDIS + I  
Sbjct: 59  EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118

Query: 58  LGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIG 116
           L D +   + +L+ ++   N +  I+       F          L  L  L L +   + 
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISH----RAF--------SGLNSLEQLTLEKCN-LT 165

Query: 117 KIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
            IP    S L  L VL L +  ++  I         +L+ L+
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLE 206

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 101 LTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSGT-----KLQTLDAS 154
              L  L+L+ N  +  +  G  + L  L  L L +N+L   IP G       L  LD S
Sbjct: 55  FPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDIS 112

Query: 155 S 155
            
Sbjct: 113 E 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 7/68 (10%)

Query: 94  IPTKIDQLTMLHALDLSRNQPIGKIPEG-ISQLGLLGVLSLSNNKLSGKIPSGT-----K 147
               +     L  L +   Q +  +    +  LG L  L++  + L   +         +
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 148 LQTLDASS 155
           L  L+ S 
Sbjct: 82  LSRLNLSF 89

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 26/173 (15%), Positives = 52/173 (30%), Gaps = 41/173 (23%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGDI 61
            +L+ + N  ++ +       + L+ L     NG        +    +  +         
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRLQTL-ILQRNGLKNFFKVALMTKNMSSLETLD----- 409

Query: 62  IIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKI-------------DQLTM-LHAL 107
                          S+  +N               +               L   +  L
Sbjct: 410 --------------VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL 455

Query: 108 DLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASS 155
           DL  N+ I  IP+ ++ L  L  L++++N+L   +P G     T LQ +    
Sbjct: 456 DLHNNR-IMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 95  PTKIDQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG--TKLQTL 151
              I  L+ L  L LS N+ I  +   +      L  L +S+N+L   I       L+ L
Sbjct: 69  MPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPMASLRHL 126

Query: 152 DASS 155
           D S 
Sbjct: 127 DLSF 130

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.1 bits (104), Expect = 5e-06
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
             +  L  LDLS N  +  + E + S L  L VL L NN +   +         +LQ L 
Sbjct: 85  VPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLY 142

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.1 bits (104), Expect = 5e-06
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
            +LT LH+L LS N  +  I       +  L  L LS+N L   +          L+ L 
Sbjct: 61  TRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLL 118

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
                L  +DLS NQ I ++       L  L  L L  NK++ ++P         LQ L 
Sbjct: 53  SPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
             L  L++L L  N+ I ++P+ +   L  L +L L+ NK++  +          L  L 
Sbjct: 77  QGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLS 134

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 8/59 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSGT-----KLQTL 151
           + L  L  L L+ N+ I  +       L  L +LSL +NKL   I  GT      +QT+
Sbjct: 101 EGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTM 157

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 30/166 (18%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK-----SNHINGCVPIRLCYVRPVQVLDISY-- 54
             L LS N LS     CS+       LK      N +   +      +  ++ LD  +  
Sbjct: 55  TKLSLSSNGLSF-KGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN 112

Query: 55  -SSILGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRN 112
              +    + +S+ +L  +        +        +F        + L+ L  L ++ N
Sbjct: 113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFN----GIF--------NGLSSLEVLKMAGN 160

Query: 113 QPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
                    I ++L  L  L LS  +L  ++        + LQ L+
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLN 205

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 26/162 (16%), Positives = 46/162 (28%), Gaps = 47/162 (29%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHIN--GCVPIRLCYVRPVQVLDISYSSI 57
             L+L  N+L             L  L   SN ++  GC          ++ LD+S+   
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF--- 87

Query: 58  LGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK 117
                             N +               + +    L  L  LD   +  + +
Sbjct: 88  ------------------NGVIT-------------MSSNFLGLEQLEHLDFQHSN-LKQ 115

Query: 118 IPEG--ISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
           + E      L  L  L +S+        +G     + L+ L 
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLK 156

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 8e-06
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 98  IDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--TKLQTLDASS 155
           +  LT +++L+L  N  +      +S +  L  L+++ +K+    P    T L +L  + 
Sbjct: 128 LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNY 186

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 23/159 (14%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSILG 59
            Y     NQ+++  P  +     L  LK  +N I    P+       +  L+I  + I  
Sbjct: 202 HYFTAYVNQITDITPVAN--MTRLNSLKIGNNKITDLSPLANL--SQLTWLEIGTNQISD 257

Query: 60  DIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
              +  +  L+M+    N I+ I+V              ++ L+ L++L L+ NQ   + 
Sbjct: 258 INAVKDLTKLKMLNVGSNQISDISV--------------LNNLSQLNSLFLNNNQLGNED 303

Query: 119 PEGISQLGLLGVLSLSNNKLSGKIPSG--TKLQTLDASS 155
            E I  L  L  L LS N ++   P    +K+ + D ++
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 39/162 (24%), Positives = 61/162 (37%), Gaps = 27/162 (16%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSIL 58
           +  L L+ NQ+ +  P  S    SL       N I    P  +  +  +  L I  + I 
Sbjct: 179 LYSLSLNYNQIEDISPLAS--LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT 234

Query: 59  GDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK 117
               + ++  L  ++   N I+ IN               +  LT L  L++  NQ I  
Sbjct: 235 DLSPLANLSQLTWLEIGTNQISDINA--------------VKDLTKLKMLNVGSNQ-ISD 279

Query: 118 IPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASS 155
           I   ++ L  L  L L+NN+L  +        T L TL  S 
Sbjct: 280 ISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 26/160 (16%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSILG 59
               L    +++ +       +S+  L      +     I       ++ L+++ + I  
Sbjct: 25  IRAVLQKASVTDVVTQEEL--ESITKLVVAGEKVASIQGIEYL--TNLEYLNLNGNQITD 80

Query: 60  DIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
              + +++ L  +    N I  I+               +  LT L  L L+ +  I  I
Sbjct: 81  ISPLSNLVKLTNLYIGTNKITDISA--------------LQNLTNLRELYLNEDN-ISDI 125

Query: 119 PEGISQLGLLGVLSLSNNKLSGKIPSG---TKLQTLDASS 155
              ++ L  +  L+L  N     +      T L  L  + 
Sbjct: 126 SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE 164

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 94  IPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--TKLQTL 151
             + +  +T L+ L ++ ++ +  +   I+ L  L  LSL+ N++    P    T L   
Sbjct: 147 DLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYF 204

Query: 152 DASS 155
            A  
Sbjct: 205 TAYV 208

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 23/157 (14%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSI--L 58
           +E LD S N ++      +     LK L+ N++       L Y   +  +D+SY+ +  +
Sbjct: 207 VEELDASHNSINVVRGPVNVELTILK-LQHNNLTD-TAWLLNYPG-LVEVDLSYNELEKI 263

Query: 59  GDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK 117
                V M  L+ +    N +               +      +  L  LDLS N  +  
Sbjct: 264 MYHPFVKMQRLERLYISNNRLVA-------------LNLYGQPIPTLKVLDLSHNH-LLH 309

Query: 118 IPEGISQLGLLGVLSLSNNKLSGKIPSGT--KLQTLD 152
           +     Q   L  L L +N +   +   T   L+ L 
Sbjct: 310 VERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNLT 345

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 23/162 (14%), Positives = 59/162 (36%), Gaps = 22/162 (13%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSI-- 57
           + +   ++ + +        ++ +++L      I         Y   +Q L + +++I  
Sbjct: 48  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 107

Query: 58  LGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIG 116
           L   +  ++  L ++  ++N ++ +       +F             L  L +S N  + 
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLP----RGIFHN--------TPKLTTLSMSNNN-LE 154

Query: 117 KIPEGI-SQLGLLGVLSLSNNKLSGKIPSG--TKLQTLDASS 155
           +I +        L  L LS+N+L+  +       L   + S 
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSY 195

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 21/159 (13%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSI-- 57
           E L+L+D Q+ E   +   Y  +++ L    N I    P     V  + VL +  + +  
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 58  LGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIG 116
           L   I  +   L  +    N++  I      + F+          T L  L LS N+ + 
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIE----DDTFQ--------ATTSLQNLQLSSNR-LT 178

Query: 117 KIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASS 155
            +   +S +  L   ++S N LS  +     ++ LDAS 
Sbjct: 179 HVD--LSLIPSLFHANVSYNLLS-TLAIPIAVEELDASH 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
             L +L  LDLS N  +  +       LG L  L L    L  ++  G       LQ L 
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLY 135

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
             L  L  L L  N+ I  +PE     L  L  L L  N+++  +         +L TL 
Sbjct: 150 RDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLY 207

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
             L  L  L L  N  +  +P+     LG L  L L  N++S  +P         L  L 
Sbjct: 126 RGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLL 183

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 94  IPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGT--KLQTL 151
           +      +  L  LDLS N  +  +     Q   L  L L +N +   +   T   L+ L
Sbjct: 293 LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNL 350

Query: 152 D 152
            
Sbjct: 351 T 351

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.5 bits (97), Expect = 4e-05
 Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 21/159 (13%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKV--LKSNHINGCVPIRLCYVRPVQVLDISYSSI-- 57
           E L+L+D Q+ E   +   Y  +++   +  N I    P     V  + VL +  + +  
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 58  LGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIG 116
           L   I  +   L  +    N++  I      + F+          T L  L LS N+ + 
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIE----DDTFQ--------ATTSLQNLQLSSNR-LT 184

Query: 117 KIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASS 155
            +   +S +  L   ++S N LS  +     ++ LDAS 
Sbjct: 185 HVD--LSLIPSLFHANVSYNLLS-TLAIPIAVEELDASH 220

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 6e-05
 Identities = 23/162 (14%), Positives = 59/162 (36%), Gaps = 22/162 (13%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSI-- 57
           + +   ++ + +        ++ +++L      I         Y   +Q L + +++I  
Sbjct: 54  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 113

Query: 58  LGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIG 116
           L   +  ++  L ++  ++N ++ +       +F             L  L +S N  + 
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLP----RGIFH--------NTPKLTTLSMSNNN-LE 160

Query: 117 KIPEGI-SQLGLLGVLSLSNNKLSGKIPSG--TKLQTLDASS 155
           +I +        L  L LS+N+L+  +       L   + S 
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSY 201

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
           D+LT L  L+L+ NQ +  +P+G+  +L  L  L LS N+L   +P G     T+L+ L 
Sbjct: 130 DKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLR 187

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 9/66 (13%)

Query: 94  IPTKI-DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----T 146
           +P  + D+LT L  L L  NQ +  +P+G+  +L  L  L+L++N+L   +P G     T
Sbjct: 100 LPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLT 157

Query: 147 KLQTLD 152
            L  LD
Sbjct: 158 NLTELD 163

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 101 LTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSGT-----KLQTLD 152
           L  L  L L RN  I +I  G  + L  L  L L +N L+  IPSG      KL+ L 
Sbjct: 98  LHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELW 153

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 101 LTMLHALDLSRNQPIGKIPEG-ISQLGLLGVLSLSNNKLSGKIPSGT-----KLQTLDAS 154
           L  L  L++S N    +I  G    L  L  L + N+++S  I          L  L+ +
Sbjct: 217 LVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLA 274

Query: 155 S 155
            
Sbjct: 275 H 275

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSGT-----KLQTLD 152
           + L  L+ L+L  N  +  IP G    L  L  L L NN +   IPS        L  LD
Sbjct: 120 NGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLD 177

Query: 153 ASSY 156
               
Sbjct: 178 LGEL 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSGTKLQTL 151
           +++  L  LDL   + +  I EG    L  L  L+L    +   +P+ T L  L
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGL 220

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 10/68 (14%)

Query: 94  IPTKIDQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TK 147
           +P  I   T    L+L  N  I  I       L  L VL L  N +  +I  G       
Sbjct: 69  VPQGIPSNT--RYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLAS 124

Query: 148 LQTLDASS 155
           L TL+   
Sbjct: 125 LNTLELFD 132

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 29/173 (16%), Positives = 55/173 (31%), Gaps = 42/173 (24%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRP--------VQVLDIS 53
             L L +N +   IP  S  +  +  L    +     +   Y+          ++ L++ 
Sbjct: 150 RELWLRNNPIES-IP--SYAFNRVPSLMRLDLGELKKLE--YISEGAFEGLFNLKYLNLG 204

Query: 54  YSSI-----LGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALD 108
             +I     L  ++ +  +++      N    I        F          L+ L  L 
Sbjct: 205 MCNIKDMPNLTPLVGLEELEMS----GNHFPEIR----PGSFHG--------LSSLKKLW 248

Query: 109 LSRNQPIGKIPEG-ISQLGLLGVLSLSNNKLSGKIPSGT-----KLQTLDASS 155
           +  +Q +  I       L  L  L+L++N LS  +P         L  L    
Sbjct: 249 VMNSQ-VSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHH 299

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 25/177 (14%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSIL 58
           ++ L+LS N L E           +  +    NHI         ++  +Q LD+  +++ 
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

Query: 59  GDIIIVSMIDLQMVQKKNSIAIINVVVVG---------ELFKRPIPTKIDQLTMLHALDL 109
               I S+ D+ +    N +  +  + +           L    I   + ++  L  L L
Sbjct: 376 TIHFIPSIPDIFL--SGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433

Query: 110 SRNQPIGKIPEG--ISQLGLLGVLSLSNNKLSGKIPSG---------TKLQTLDASS 155
           ++N+           S+   L  L L  N L     +          + LQ L  + 
Sbjct: 434 NQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 38/162 (23%)

Query: 2   EYLDLSDNQLSE-EIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRP-VQVLDISYSSI 57
             + LS+N+L   +I +       L++L    N  + C   +     P ++ L +     
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE--- 460

Query: 58  LGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK 117
                             N + +     +            + L+ L  L L+ N  +  
Sbjct: 461 ------------------NMLQLAWETELC-------WDVFEGLSHLQVLYLNHNY-LNS 494

Query: 118 IPEGI-SQLGLLGVLSLSNNKLSGKIPSG---TKLQTLDASS 155
           +P G+ S L  L  LSL++N+L+  +        L+ LD S 
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 8e-05
 Identities = 30/166 (18%), Positives = 58/166 (34%), Gaps = 27/166 (16%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGD 60
           ++ LDL DN L+  I         +  L  N +   +P        + + +    ++   
Sbjct: 364 LQTLDLRDNALTT-IHFIPSI-PDI-FLSGNKLV-TLPKINLTANLIHLSENRLENLDIL 419

Query: 61  IIIVSMIDLQMV-QKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQ----PI 115
             ++ +  LQ++   +N  +                    +   L  L L  N       
Sbjct: 420 YFLLRVPHLQILILNQNRFSSC-----------SGDQTPSENPSLEQLFLGENMLQLAWE 468

Query: 116 GKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASS 155
            ++   +   L  L VL L++N L+  +P G     T L+ L  +S
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNS 513

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 32/157 (20%), Positives = 49/157 (31%), Gaps = 38/157 (24%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSILG 59
            +LDLS   +           + LKVL    N IN         +  +QVL++SY     
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY----- 323

Query: 60  DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP 119
                           N +  +        F          L  +  +DL +N  I  I 
Sbjct: 324 ----------------NLLGELY----SSNFYG--------LPKVAYIDLQKNH-IAIIQ 354

Query: 120 EGI-SQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASS 155
           +     L  L  L L +N L+  I     +  +  S 
Sbjct: 355 DQTFKFLEKLQTLDLRDNALT-TIHFIPSIPDIFLSG 390

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 27/158 (17%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGDI 61
           E LD+S N  + +I        ++   ++  +     I         + D   ++  G  
Sbjct: 207 EILDVSGNGWTVDITGNF--SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264

Query: 62  -IIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPE 120
              V  +DL        +  +N                + L  L  L+L+ N+ I KI +
Sbjct: 265 RSSVRHLDLS----HGFVFSLN------------SRVFETLKDLKVLNLAYNK-INKIAD 307

Query: 121 GI-SQLGLLGVLSLSNNKLSGKIPSGT-----KLQTLD 152
                L  L VL+LS N L  ++ S       K+  +D
Sbjct: 308 EAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYID 344

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 15/63 (23%), Positives = 19/63 (30%), Gaps = 7/63 (11%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
             L     L LS N  I  +       L  L +L L +      I          L+ LD
Sbjct: 21  QVLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 153 ASS 155
             S
Sbjct: 80  LGS 82

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 35/176 (19%)

Query: 2   EYLDLSDNQLSEEIPHCS-RYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL 58
           + L+L        I   + R   +L++L   S+ I    P     +  +  L + +  + 
Sbjct: 51  QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS 110

Query: 59  GDIIIVSMI-DLQMVQK----KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQ 113
             ++      +L+ + +    KN I  +            +     +L  L ++D S NQ
Sbjct: 111 DAVLKDGYFRNLKALTRLDLSKNQIRSL-----------YLHPSFGKLNSLKSIDFSSNQ 159

Query: 114 PIGKIPE----GISQLGLLGVLSLSNNKLSGKIPSG----------TKLQTLDASS 155
            I  + E     +    L    SL+ N L  ++               L+ LD S 
Sbjct: 160 -IFLVCEHELEPLQGKTLS-FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 23/164 (14%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHIN--GCVPIRLCYVRPVQVLDISYSSI 57
            +LD S+N L++ +     +   L+ L  + N +     +      ++ +Q LDIS +S+
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386

Query: 58  LGDIIIVSMIDLQMVQKKN-SIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIG 116
             D         + +   N S  I+   +   L              +  LDL  N+ I 
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-----------PPRIKVLDLHSNK-IK 434

Query: 117 KIPEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASS 155
            IP+ + +L  L  L++++N+L   +P G     T LQ +   +
Sbjct: 435 SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 95  PTKIDQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG--TKLQTL 151
            + I  L+ L  L +S N+ I  +   +      L  L LS+NKL  KI       L+ L
Sbjct: 38  TSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKLV-KISCHPTVNLKHL 95

Query: 152 DASS 155
           D S 
Sbjct: 96  DLSF 99

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 30/161 (18%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSI---- 57
           + L +SDNQL+  +P        L    +N +   +P+    +   Q L +S + +    
Sbjct: 144 QELSVSDNQLAS-LPALPSELCKLWAY-NNQLT-SLPMLPSGL---QELSVSDNQLASLP 197

Query: 58  --LGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHA--------- 106
               ++  +   + ++       + +  ++V       +P    +L  L           
Sbjct: 198 TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLP 257

Query: 107 --------LDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS 139
                   L + RNQ + ++PE +  L     ++L  N LS
Sbjct: 258 MLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 24/163 (14%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSI-- 57
             L++ ++ L   +P C      +  L    N++   +P     +R    L++S + +  
Sbjct: 43  AVLNVGESGL-TTLPDCL--PAHITTLVIPDNNLT-SLPALPPELR---TLEVSGNQLTS 95

Query: 58  ----LGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQ 113
                  ++ +S+    +       + +  + +       +P     L  L    +S NQ
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQEL---SVSDNQ 152

Query: 114 PIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-TKLQTLDASS 155
            +  +P   S+L     L   NN+L+  +P   + LQ L  S 
Sbjct: 153 -LASLPALPSELC---KLWAYNNQLT-SLPMLPSGLQELSVSD 190

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 38.0 bits (88), Expect = 7e-04
 Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 37/179 (20%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHIN--GCVPIRLCYVRPVQVLDISYSSI-- 57
             L++S NQL+  +P        L +  SN +     +P  LC       L I  + +  
Sbjct: 84  RTLEVSGNQLTS-LPVLPPGLLELSIF-SNPLTHLPALPSGLCK------LWIFGNQLTS 135

Query: 58  ----LGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQ 113
                  +  +S+ D Q+       + +  +         +P     L  L    +S NQ
Sbjct: 136 LPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQEL---SVSDNQ 192

Query: 114 PIGKIPEGISQL-----------------GLLGVLSLSNNKLSGKIPSGTKLQTLDASS 155
            +  +P   S+L                   L  L +S N+L+      ++L+ L  S 
Sbjct: 193 -LASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSG 250

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
            +   L AL L+ N  I  I E   S LG L  L LS N LS  + S      + L  L+
Sbjct: 73  QRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN 130

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG----TKLQTLD 152
           D LT L  LDL  NQ +  +P  +  +L  L  L +  NKL+ ++P G    T L  L 
Sbjct: 85  DSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTL 151
           D+L  L  L +  N+ + ++P GI +L  L  L+L  N+L   IP G     + L   
Sbjct: 109 DRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHA 164

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSGTKLQTLDA 153
             L+ +  +++   + +  I      +L LL  L + N  L    P  TK+ + D 
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDI 131

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 93  PIPTKIDQLTMLHALDLSRNQPIGKIPEGI--SQLGLLGVLSLSNNKLSGKIPS----GT 146
           P  TK+    +   L+++ N  +  IP             L L NN  +  +      GT
Sbjct: 121 PDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGT 179

Query: 147 KLQTLD 152
           KL  + 
Sbjct: 180 KLDAVY 185

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 6/58 (10%)

Query: 101 LTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
           L  +  + +S +  + ++       L  +  + + N +    I          L+ L 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 33/158 (20%), Positives = 66/158 (41%), Gaps = 24/158 (15%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG 59
             + +++NQ+++  P  +    +L  L   +N I    P++      +  L++S ++I  
Sbjct: 93  VDILMNNNQIADITPLAN--LTNLTGLTLFNNQITDIDPLKNL--TNLNRLELSSNTISD 148

Query: 60  DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP 119
              +  +  LQ +   N +  +                +  LT L  LD+S N+ +  I 
Sbjct: 149 ISALSGLTSLQQLSFGNQVTDL--------------KPLANLTTLERLDISSNK-VSDIS 193

Query: 120 EGISQLGLLGVLSLSNNKLSGKIPSG--TKLQTLDASS 155
             +++L  L  L  +NN++S   P G  T L  L  + 
Sbjct: 194 -VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNG 230

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 28/160 (17%)

Query: 2   EYLDLSDNQLS--EEIPHCSRYWQSLKVLK-SNHINGCVPIRLCYVRPVQVLDISYSSIL 58
             L+LS N +S    +   +    SL+ L   N +    P+       ++ LDIS + + 
Sbjct: 137 NRLELSSNTISDISALSGLT----SLQQLSFGNQVTDLKPLANL--TTLERLDISSNKVS 190

Query: 59  GDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK 117
              ++  + +L+ +    N I+ I              T +  LT L  L L+ NQ +  
Sbjct: 191 DISVLAKLTNLESLIATNNQISDI--------------TPLGILTNLDELSLNGNQ-LKD 235

Query: 118 IPEGISQLGLLGVLSLSNNKLSGKIPSG--TKLQTLDASS 155
           I   ++ L  L  L L+NN++S   P    TKL  L   +
Sbjct: 236 IG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 274

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 29/162 (17%)

Query: 1   MEYLDLSDNQLS--EEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSS 56
           +E LD+S N++S    +   +    +L+ L   +N I+   P+ +     +  L ++ + 
Sbjct: 179 LERLDISSNKVSDISVLAKLT----NLESLIATNNQISDITPLGIL--TNLDELSLNGNQ 232

Query: 57  ILGDIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI 115
           +     + S+ +L  +    N I+ +                +  LT L  L L  NQ I
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQISNL--------------APLSGLTKLTELKLGANQ-I 277

Query: 116 GKIPEGISQLGLLGVLSLSNNKLSGKIPSG--TKLQTLDASS 155
             I   ++ L  L  L L+ N+L    P      L  L    
Sbjct: 278 SNIS-PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 318

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 21/136 (15%)

Query: 23  QSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQ-KKNSIAII 81
            S  + +   IN                 +  +++   +    +  +  +Q  +  I  I
Sbjct: 4   GSATITQDTPINQIFTDTAL--AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI 61

Query: 82  NVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK 141
                           ++ L  L  ++ S NQ +  I   +  L  L  + ++NN+++  
Sbjct: 62  --------------DGVEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQIADI 105

Query: 142 IPSG--TKLQTLDASS 155
            P    T L  L   +
Sbjct: 106 TPLANLTNLTGLTLFN 121

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 21/154 (13%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGDI 61
               L    +++ +         +  L+++ +       + Y+  +  ++ S + +    
Sbjct: 27  MKTVLGKTNVTDTVSQTD--LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT 84

Query: 62  IIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPE 120
            + ++  L  +    N IA I              T +  LT L  L L  NQ I  I  
Sbjct: 85  PLKNLTKLVDILMNNNQIADI--------------TPLANLTNLTGLTLFNNQ-ITDIDP 129

Query: 121 GISQLGLLGVLSLSNNKLSGKIPSG--TKLQTLD 152
            +  L  L  L LS+N +S        T LQ L 
Sbjct: 130 -LKNLTNLNRLELSSNTISDISALSGLTSLQQLS 162

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 101 LTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSGT-----KLQTLD 152
           L  L  L LSRN  I  I  G  + L  L  L L +N+L+  IP+G      KL+ L 
Sbjct: 87  LRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELW 142

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.5 bits (95), Expect = 9e-05
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
           + L  L+ L+L  N+ +  IP G    L  L  L L NN +   IPS        L+ LD
Sbjct: 109 NGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLD 166

Query: 153 ASSY 156
               
Sbjct: 167 LGEL 170

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 9/68 (13%)

Query: 94  IPTKIDQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSGT-----K 147
           IP  +  L  L  LDLS N  +  I  G    L  L  L +  +++   I          
Sbjct: 200 IPN-LTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQS 256

Query: 148 LQTLDASS 155
           L  ++ + 
Sbjct: 257 LVEINLAH 264

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSGTKLQTL 151
           +++  L  LDL   + +  I EG    L  L  L+L+   L  +IP+ T L  L
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKL 209

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
           ++LT L  L+LS NQ +  +P G+  +L  L  L+L+ N+L   +P G     T+L+ L 
Sbjct: 73  NKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLR 130

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 36/166 (21%), Positives = 58/166 (34%), Gaps = 36/166 (21%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHI-NGCVPIRLCYVRPVQVLDISYSSIL 58
             L + DN++ +         +++  ++   N + N            +  L IS + + 
Sbjct: 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL- 184

Query: 59  GDIIIVSMIDLQMVQK-------KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSR 111
                 + I   + +         N I  I      E   R         + L+ L L  
Sbjct: 185 ------TGIPKDLPETLNELHLDHNKIQAIE----LEDLLR--------YSKLYRLGLGH 226

Query: 112 NQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG----TKLQTLD 152
           NQ I  I  G  S L  L  L L NNKLS ++P+G      LQ + 
Sbjct: 227 NQ-IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGT 146
             L  L  L L  N+ + ++P G+  L LL V+ L  N ++ K+    
Sbjct: 238 SFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNIT-KVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 104 LHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSGT-----KLQTLDASS 155
           L+ L L  N+ I  I      +   L  L L +N++   I +G+      L+ L   +
Sbjct: 195 LNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDN 250

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 100 QLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSGT--KLQTLD 152
            L  L+AL L  N+ I KI E   S L  L  L +S N L  +IP      L  L 
Sbjct: 76  GLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELR 129

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 29/157 (18%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHIN--GCVPIRLCYVRPVQVLDISYSSILG 59
           E L  S N L+E +P   +  +SL V  +N++     +P  L      + L +S + +  
Sbjct: 94  ESLVASCNSLTE-LPELPQSLKSLLVD-NNNLKALSDLPPLL------EYLGVSNNQLEK 145

Query: 60  DIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
              + +   L+++    NS+  +                 D    L  +    NQ + ++
Sbjct: 146 LPELQNSSFLKIIDVDNNSLKKL----------------PDLPPSLEFIAAGNNQ-LEEL 188

Query: 119 PEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASS 155
           PE +  L  L  +   NN L         L+++ A +
Sbjct: 189 PE-LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN 224

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 25/158 (15%), Positives = 53/158 (33%), Gaps = 13/158 (8%)

Query: 2   EYLDLSDNQLSE--EIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSI 57
           E +   +N L E  E+ +       L  +   +N +   +P     +  + V D   + +
Sbjct: 218 ESIVAGNNILEELPELQNLP----FLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDL 272

Query: 58  LGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK 117
                 ++ +D+          +   +         I +  D    L  L++S N+ + +
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIE 331

Query: 118 IPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASS 155
           +P    +L     L  S N L+        L+ L    
Sbjct: 332 LPALPPRLE---RLIASFNHLAEVPELPQNLKQLHVEY 366

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 8/60 (13%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLD 152
           D+LT L  L LS+NQ I  +P+G+  +L  L +L L  NKL   +P+G     T+L+ L 
Sbjct: 49  DKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELA 106

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG----TKLQTLD 152
             L  L  L LS N  I  +  G  +    L  L L+NNKL  K+P G      +Q + 
Sbjct: 213 KGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 269

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 101 LTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSGT--KLQTLDASS 155
           L  LH L L  N+ I KI  G  + L  L  L LS N+L  ++P      LQ L    
Sbjct: 75  LKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHE 130

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 99  DQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGT 146
                L  L L+ N+ + K+P G++    + V+ L NN +S  I S  
Sbjct: 237 ANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNIS-AIGSND 282

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 94  IPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNN---KLSGKIPSGTKLQT 150
           +   +  L     L LS N  I KI   +S +  L +LSL  N   K+         L+ 
Sbjct: 40  MDATLSTLKACKHLALSTNN-IEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEE 97

Query: 151 LDAS 154
           L  S
Sbjct: 98  LWIS 101

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 98  IDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDA 153
           I  L+ L  L +            +S L  L +L +S++     I +      K+ ++D 
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 154 SS 155
           S 
Sbjct: 144 SY 145

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 37/164 (22%)

Query: 2   EYLDLSDNQLS--EEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSI 57
           + +  +++ +   + I +      ++  L    N +    P  L  ++ +  L +  + I
Sbjct: 46  DQIIANNSDIKSVQGIQYL----PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99

Query: 58  -----LGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRN 112
                L D+  +  + L+     N I+ IN               +  L  L +L L  N
Sbjct: 100 KDLSSLKDLKKLKSLSLE----HNGISDING--------------LVHLPQLESLYLGNN 141

Query: 113 QPIGKIPEGISQLGLLGVLSLSNNKLS--GKIPSGTKLQTLDAS 154
           + I  I   +S+L  L  LSL +N++S    +   TKLQ L  S
Sbjct: 142 K-ITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 183

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.84
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.79
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.78
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.77
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.76
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.74
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.74
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.74
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.74
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.73
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.73
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.73
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.73
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.73
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.73
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.73
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.72
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.72
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.72
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.72
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.72
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.72
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.71
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.71
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.71
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.71
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.7
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.7
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.7
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.69
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.69
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.68
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.68
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.67
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.67
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.66
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.66
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.66
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.66
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.65
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.65
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.65
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.64
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.63
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.62
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.62
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.62
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.61
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.6
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.6
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.58
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.58
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.56
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.53
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.53
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.52
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.52
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.51
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.5
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.5
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.49
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.49
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.49
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.47
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.46
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.46
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.45
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.45
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.43
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.42
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.4
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.37
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.36
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.33
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.31
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.3
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.3
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.27
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.24
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.07
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.02
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.77
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.72
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.63
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.5
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.5
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.49
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.38
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.36
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.22
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.1
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.08
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.93
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.93
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.17
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.98
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.83
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.64
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.57
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.31
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.3
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.72
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.56
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.25
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.1
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.1

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=1e-22  Score=163.70  Aligned_cols=75  Identities=25%  Similarity=0.337  Sum_probs=41.9

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~   71 (157)
                      |++|++++|.+++.+|..+..+++|++|  .+|.+.+.+|..++.+++|++|++++|.+.+.+|       +++.+++++
T Consensus       468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  547 (768)
T 3rgz_A          468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT  547 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred             ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence            3455666666665555555555555555  5555555555555555555555555555554443       445555555


Q ss_pred             cccc
Q 039394           72 VQKK   75 (157)
Q Consensus        72 n~l~   75 (157)
                      |.+.
T Consensus       548 N~l~  551 (768)
T 3rgz_A          548 NLFN  551 (768)
T ss_dssp             SEEE
T ss_pred             CccC
Confidence            5443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=9.8e-22  Score=143.13  Aligned_cols=155  Identities=24%  Similarity=0.342  Sum_probs=97.3

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCC-CCCEEEccCCcceeecc------eeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVR-PVQVLDISYSSILGDII------IVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~------~l~~l~l~~   71 (157)
                      |++|++++|.+++.+|..+..+++|++|  ..|.+.+.+|..+..++ +|++|++++|.+++..|      .++.|++++
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~  206 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR  206 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCS
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcC
Confidence            3445555555555555555555555555  44555545555555554 55555555555554433      355555555


Q ss_pred             ccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394           72 VQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP  143 (157)
Q Consensus        72 n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  143 (157)
                      |.+.+..  .+..+..++.+      +.+..|. +..+++|++|++++|++.+.+|..+..+++|+.|++++|.++|.+|
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            5554332  23333344433      3333443 6778899999999999988999999999999999999999999999


Q ss_pred             CC---CCcccccCCCC
Q 039394          144 SG---TKLQTLDASSY  156 (157)
Q Consensus       144 ~~---~~l~~l~~~~~  156 (157)
                      ..   +.++.++++.+
T Consensus       286 ~~~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          286 QGGNLQRFDVSAYANN  301 (313)
T ss_dssp             CSTTGGGSCGGGTCSS
T ss_pred             CCccccccChHHhcCC
Confidence            87   55666666654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.87  E-value=8.9e-22  Score=158.22  Aligned_cols=155  Identities=30%  Similarity=0.460  Sum_probs=110.5

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc----------------
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII----------------   62 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~----------------   62 (157)
                      |++|++++|.+++.+|..+..+++|++|  .+|.+.+.+|..++.+++|++|++++|.+.|.+|                
T Consensus       492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~  571 (768)
T 3rgz_A          492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA  571 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred             CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence            5678888888888888888888888888  7788888888888888888888888887765443                


Q ss_pred             -------------------------------------------------------------eeeeeecccccccceE--E
Q 039394           63 -------------------------------------------------------------IVSMIDLQMVQKKNSI--A   79 (157)
Q Consensus        63 -------------------------------------------------------------~l~~l~l~~n~l~~~~--~   79 (157)
                                                                                   +++.+++++|.+.+..  +
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~  651 (768)
T 3rgz_A          572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE  651 (768)
T ss_dssp             SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG
T ss_pred             cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH
Confidence                                                                         2455667777766544  4


Q ss_pred             Eceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCCCCcccccC
Q 039394           80 IINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDA  153 (157)
Q Consensus        80 ~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~l~~l~~  153 (157)
                      +..+..++.+      +.+.+|..++.+++|+.||+++|++.|.+|..+..++.|++|++++|+++|.+|+...++.++.
T Consensus       652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~  731 (768)
T 3rgz_A          652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP  731 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCG
T ss_pred             HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCH
Confidence            4444444444      6666777777777777777777777777777777777777777777777777777655555554


Q ss_pred             CC
Q 039394          154 SS  155 (157)
Q Consensus       154 ~~  155 (157)
                      .+
T Consensus       732 ~~  733 (768)
T 3rgz_A          732 AK  733 (768)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.84  E-value=3.6e-21  Score=140.11  Aligned_cols=74  Identities=22%  Similarity=0.360  Sum_probs=35.4

Q ss_pred             cEEECcC-CccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394            2 EYLDLSD-NQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM   71 (157)
Q Consensus         2 ~~L~L~~-n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~   71 (157)
                      ++|++++ |.+.+.+|..+..+++|++|  ..|.+.+..|..+..+++|++|++++|.+.+.+|       +++.|++++
T Consensus        79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  158 (313)
T 1ogq_A           79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG  158 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred             CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence            4444442 44444444445455555555  4444444444445555555555555554443222       444455555


Q ss_pred             cccc
Q 039394           72 VQKK   75 (157)
Q Consensus        72 n~l~   75 (157)
                      |.+.
T Consensus       159 N~l~  162 (313)
T 1ogq_A          159 NRIS  162 (313)
T ss_dssp             SCCE
T ss_pred             Cccc
Confidence            5444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=2e-20  Score=137.12  Aligned_cols=152  Identities=19%  Similarity=0.289  Sum_probs=70.7

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee----------------cc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD----------------II   62 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~----------------~~   62 (157)
                      |++|++++|.++ .+|..+..+++|++|  ..|.+. .+|..+..+++|++|++++|.+.+.                ++
T Consensus       106 L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~  183 (328)
T 4fcg_A          106 LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV  183 (328)
T ss_dssp             CSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEEST
T ss_pred             CCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCC
Confidence            344555555555 445555555555555  444444 4444555555555555555433221                22


Q ss_pred             eeeeeecccccccceE-EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccC
Q 039394           63 IVSMIDLQMVQKKNSI-AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSN  135 (157)
Q Consensus        63 ~l~~l~l~~n~l~~~~-~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~  135 (157)
                      +++.|++++|.+...+ .+..+..++++      +. .+|..+..+++|++|++++|.+.+.+|..++.+++|+.|++++
T Consensus       184 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~  262 (328)
T 4fcg_A          184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD  262 (328)
T ss_dssp             TCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred             CCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence            3444555555444332 22333333322      11 2333444455555555555555555555555555555555555


Q ss_pred             CcceecCCCC----CCcccccCCC
Q 039394          136 NKLSGKIPSG----TKLQTLDASS  155 (157)
Q Consensus       136 N~l~~~~p~~----~~l~~l~~~~  155 (157)
                      |.+.+.+|..    +.++.|+++.
T Consensus       263 n~~~~~~p~~~~~l~~L~~L~L~~  286 (328)
T 4fcg_A          263 CSNLLTLPLDIHRLTQLEKLDLRG  286 (328)
T ss_dssp             CTTCCBCCTTGGGCTTCCEEECTT
T ss_pred             CCchhhcchhhhcCCCCCEEeCCC
Confidence            5544444443    4444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=1.1e-20  Score=138.49  Aligned_cols=152  Identities=20%  Similarity=0.181  Sum_probs=130.9

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcC---------CCCCCEEEccCCcceeecc-------
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCY---------VRPVQVLDISYSSILGDII-------   62 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~---------l~~L~~L~l~~n~~~~~~~-------   62 (157)
                      |++|++++|.++ .+|..+..+++|++|  ..|...+.+|..+..         +++|++|++++|.++ .+|       
T Consensus       129 L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~  206 (328)
T 4fcg_A          129 LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ  206 (328)
T ss_dssp             CSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT
T ss_pred             CCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC
Confidence            689999999999 889999999999999  677777788887765         999999999999887 443       


Q ss_pred             eeeeeecccccccceE-EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccC
Q 039394           63 IVSMIDLQMVQKKNSI-AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSN  135 (157)
Q Consensus        63 ~l~~l~l~~n~l~~~~-~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~  135 (157)
                      +++.|++++|.+.+.+ .+..+..++++      +.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++
T Consensus       207 ~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~  286 (328)
T 4fcg_A          207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG  286 (328)
T ss_dssp             TCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT
T ss_pred             CCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC
Confidence            8899999999999876 56666666655      6668899999999999999999999999999999999999999999


Q ss_pred             CcceecCCCC----CCcccccCC
Q 039394          136 NKLSGKIPSG----TKLQTLDAS  154 (157)
Q Consensus       136 N~l~~~~p~~----~~l~~l~~~  154 (157)
                      |++.+.+|..    ++++.+++.
T Consensus       287 n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          287 CVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             CTTCCCCCGGGGGSCTTCEEECC
T ss_pred             CCchhhccHHHhhccCceEEeCC
Confidence            9999999987    666666554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=5.8e-19  Score=124.65  Aligned_cols=140  Identities=24%  Similarity=0.165  Sum_probs=101.7

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~   71 (157)
                      ++.|++++|.+++..+..+..+++|++|  .+|.+.+..+..+..+++|++|++++|.+++.       +++++.|++++
T Consensus        37 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  116 (251)
T 3m19_A           37 TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG  116 (251)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCC
Confidence            4678888888887777778888888888  77888877777788888888888888887643       23788888888


Q ss_pred             ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CC
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TK  147 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~  147 (157)
                      |.+.+.                .+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+..    ++
T Consensus       117 N~l~~~----------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  180 (251)
T 3m19_A          117 NQLKSL----------------PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK  180 (251)
T ss_dssp             SCCCCC----------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             CcCCCc----------------ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence            888742                2333566777777777777777555556777777777777777777555433    56


Q ss_pred             cccccCCCC
Q 039394          148 LQTLDASSY  156 (157)
Q Consensus       148 l~~l~~~~~  156 (157)
                      ++.++++.+
T Consensus       181 L~~L~l~~N  189 (251)
T 3m19_A          181 LQTITLFGN  189 (251)
T ss_dssp             CCEEECCSC
T ss_pred             CCEEEeeCC
Confidence            666666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.79  E-value=5.4e-19  Score=126.79  Aligned_cols=154  Identities=18%  Similarity=0.120  Sum_probs=80.2

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCc-ceee-------cceeeeeecc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSS-ILGD-------IIIVSMIDLQ   70 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~-~~~~-------~~~l~~l~l~   70 (157)
                      |++|++++|.+++..+..+..+++|++|  ..|.+.+..|..+..+++|++|++++|. +...       +++++.|+++
T Consensus        34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~  113 (285)
T 1ozn_A           34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (285)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             ceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC
Confidence            4566666666665555556666666666  5566665556666666666666666665 4322       1255666666


Q ss_pred             cccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecC
Q 039394           71 MVQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKI  142 (157)
Q Consensus        71 ~n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~  142 (157)
                      +|.+.+..  .+..+..++++      +....+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..
T Consensus       114 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  193 (285)
T 1ozn_A          114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH  193 (285)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC
Confidence            66655443  23333333333      22222333445555555555555554433334555555555555555555444


Q ss_pred             CCC----CCcccccCC
Q 039394          143 PSG----TKLQTLDAS  154 (157)
Q Consensus       143 p~~----~~l~~l~~~  154 (157)
                      |..    +.++.|+++
T Consensus       194 ~~~~~~l~~L~~L~l~  209 (285)
T 1ozn_A          194 PHAFRDLGRLMTLYLF  209 (285)
T ss_dssp             TTTTTTCTTCCEEECC
T ss_pred             HhHccCcccccEeeCC
Confidence            433    344444444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.79  E-value=2.5e-19  Score=128.54  Aligned_cols=156  Identities=19%  Similarity=0.112  Sum_probs=122.4

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--cccc-ceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeecc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNH-INGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQ   70 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~-~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~   70 (157)
                      |++|++++|.+++..|..+..+++|++|  ..|. +....|..+..+++|++|++++|.+++..       ++++.|+++
T Consensus        58 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  137 (285)
T 1ozn_A           58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ  137 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC
Confidence            5789999999987778888889999999  6665 66555778888999999999999887543       378888999


Q ss_pred             cccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecC
Q 039394           71 MVQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKI  142 (157)
Q Consensus        71 ~n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~  142 (157)
                      +|.+.+..  .+..+..++++      +.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..
T Consensus       138 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence            99888765  35555555555      44344456888899999999999998888889999999999999999988754


Q ss_pred             CCC----CCcccccCCCC
Q 039394          143 PSG----TKLQTLDASSY  156 (157)
Q Consensus       143 p~~----~~l~~l~~~~~  156 (157)
                      +..    +.++.++++.+
T Consensus       218 ~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          218 TEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             HHHHTTCTTCCEEECCSS
T ss_pred             HHHcccCcccCEEeccCC
Confidence            432    77888888764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.78  E-value=1.4e-18  Score=123.84  Aligned_cols=156  Identities=21%  Similarity=0.182  Sum_probs=111.7

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~   71 (157)
                      +++|++++|.+++..+..+..+++|++|  ..|.+....+..+..+++|++|++++|.+++.       +++++.|++++
T Consensus        39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  118 (270)
T 2o6q_A           39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR  118 (270)
T ss_dssp             CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred             CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC
Confidence            4678888888886656678888888888  67777755555567788888888888887632       23788888888


Q ss_pred             ccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394           72 VQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP  143 (157)
Q Consensus        72 n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  143 (157)
                      |.+....  .+..+..++++      +....+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (270)
T 2o6q_A          119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE  198 (270)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence            8887665  34455555554      333334457778888888888888886666678888888888888888876544


Q ss_pred             CC----CCcccccCCCC
Q 039394          144 SG----TKLQTLDASSY  156 (157)
Q Consensus       144 ~~----~~l~~l~~~~~  156 (157)
                      ..    +.++.++++.+
T Consensus       199 ~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          199 GAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             TTTTTCTTCCEEECCSS
T ss_pred             HHhccccCCCEEEecCC
Confidence            32    66777777654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.77  E-value=2.2e-18  Score=124.65  Aligned_cols=155  Identities=19%  Similarity=0.163  Sum_probs=110.9

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecC-ccCcCCCCCCEEEccCCcceeec-------ceeeeeecc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVP-IRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQ   70 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~   70 (157)
                      |++|++++|.+. .+|..+..+++|++|  ..|.+.+..+ ..+..+++|++|++++|.+.+..       ++++.|+++
T Consensus        80 L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  158 (306)
T 2z66_A           80 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA  158 (306)
T ss_dssp             CCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred             cCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence            456666666666 455566677777777  5666664433 46777778888888887776433       377788888


Q ss_pred             cccccc-e-E-EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec
Q 039394           71 MVQKKN-S-I-AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK  141 (157)
Q Consensus        71 ~n~l~~-~-~-~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  141 (157)
                      +|.+.+ . + .+..+..++++      +.+..|..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+.
T Consensus       159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            887765 2 2 45555555555      5555677788888999999999998877777888889999999999999887


Q ss_pred             CCCC-----CCcccccCCCC
Q 039394          142 IPSG-----TKLQTLDASSY  156 (157)
Q Consensus       142 ~p~~-----~~l~~l~~~~~  156 (157)
                      .|..     ..++.++++.+
T Consensus       239 ~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          239 KKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             SSSSCCCCCTTCCEEECTTC
T ss_pred             CHHHHHhhhccCCEEEccCC
Confidence            7755     36778888764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=2.6e-18  Score=131.90  Aligned_cols=154  Identities=19%  Similarity=0.108  Sum_probs=112.9

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec--ceeeeeecccccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI--IIVSMIDLQMVQKKN   76 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~--~~l~~l~l~~n~l~~   76 (157)
                      |++|++++|.+++..|..+..+++|++|  .+|.+.+..|  +..+++|++|++++|.+++..  ++++.|++++|.+.+
T Consensus        36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~  113 (487)
T 3oja_A           36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR  113 (487)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCC
T ss_pred             ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCC
Confidence            5789999999998888899999999999  8888887655  889999999999999987543  478888888888877


Q ss_pred             eE--EEc---eeeeeccccccccccccccccCCCEEecCCCccCCCCChhhh-cCCCCCeEEccCCcceecCCCC--CCc
Q 039394           77 SI--AII---NVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGIS-QLGLLGVLSLSNNKLSGKIPSG--TKL  148 (157)
Q Consensus        77 ~~--~~~---~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~l~~L~~L~ls~N~l~~~~p~~--~~l  148 (157)
                      ..  .+.   .+......+.+..|..++.+++|++|++++|.+.+..|..+. .+++|+.|++++|.+++..+..  +.+
T Consensus       114 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L  193 (487)
T 3oja_A          114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL  193 (487)
T ss_dssp             EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTC
T ss_pred             CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCC
Confidence            65  221   111111225555666777777888888888887776666665 5777777777777776653333  566


Q ss_pred             ccccCCCC
Q 039394          149 QTLDASSY  156 (157)
Q Consensus       149 ~~l~~~~~  156 (157)
                      +.|+++.+
T Consensus       194 ~~L~Ls~N  201 (487)
T 3oja_A          194 KTLDLSSN  201 (487)
T ss_dssp             CEEECCSS
T ss_pred             CEEECCCC
Confidence            66666553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.77  E-value=2.2e-18  Score=123.11  Aligned_cols=155  Identities=21%  Similarity=0.136  Sum_probs=105.7

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~   71 (157)
                      |++|++++|.+++..+..+..+++|++|  .+|.+.+..+..+..+++|++|++++|.+++..       ++++.|++++
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  109 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE  109 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence            5788999999987666688888889988  778888777778888999999999999886543       2788888888


Q ss_pred             ccccceE--EEceeeeeccc------ccc-ccccccccccCCCEEecCCCccCCCCChhhhcCCCCC----eEEccCCcc
Q 039394           72 VQKKNSI--AIINVVVVGEL------FKR-PIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLG----VLSLSNNKL  138 (157)
Q Consensus        72 n~l~~~~--~~~~~~~l~~~------~~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~----~L~ls~N~l  138 (157)
                      |.+.+..  .+..+..++++      +.. .+|..+..+++|++|++++|++.+..+..+..++.++    .+++++|.+
T Consensus       110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l  189 (276)
T 2z62_A          110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM  189 (276)
T ss_dssp             SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCC
T ss_pred             CCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcc
Confidence            8887654  34444444444      332 3577777778888888888877765555555444444    555555555


Q ss_pred             eecCCCC---CCcccccCCC
Q 039394          139 SGKIPSG---TKLQTLDASS  155 (157)
Q Consensus       139 ~~~~p~~---~~l~~l~~~~  155 (157)
                      .+..+..   .+++.|+++.
T Consensus       190 ~~~~~~~~~~~~L~~L~L~~  209 (276)
T 2z62_A          190 NFIQPGAFKEIRLKELALDT  209 (276)
T ss_dssp             CEECTTSSCSCCEEEEECCS
T ss_pred             cccCccccCCCcccEEECCC
Confidence            5443333   3444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.76  E-value=4.7e-18  Score=129.13  Aligned_cols=156  Identities=21%  Similarity=0.143  Sum_probs=101.6

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cc---------
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------II---------   62 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~---------   62 (157)
                      |++|++++|.+++..+..+..+++|++|  ..|.+.+..+..+..+++|++|++++|.+++.       ++         
T Consensus       101 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  180 (452)
T 3zyi_A          101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE  180 (452)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             CCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCC
Confidence            5677777777776666777777777777  66666655555677777777777777766521       11         


Q ss_pred             ----------------eeeeeecccccccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCCh
Q 039394           63 ----------------IVSMIDLQMVQKKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPE  120 (157)
Q Consensus        63 ----------------~l~~l~l~~n~l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  120 (157)
                                      +++.|++++|.+.+...+..+..++++      +.+..|..+..+++|+.|++++|++.+..+.
T Consensus       181 ~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  260 (452)
T 3zyi_A          181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN  260 (452)
T ss_dssp             CTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT
T ss_pred             CCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH
Confidence                            445555555555544433333333333      4445566777777778888888877777777


Q ss_pred             hhhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394          121 GISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY  156 (157)
Q Consensus       121 ~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~  156 (157)
                      .+..+++|+.|++++|.+++..+..    +.++.|+++.+
T Consensus       261 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence            7777788888888888777544433    56666766654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=6.8e-18  Score=117.81  Aligned_cols=124  Identities=22%  Similarity=0.187  Sum_probs=92.9

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~   71 (157)
                      |++|++++|.+++..|..+..+++|++|  .+|.+.+..+..+..+++|++|++++|.+++.       +++++.|++++
T Consensus        42 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~  121 (229)
T 3e6j_A           42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC  121 (229)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccC
Confidence            4677888888887667777777888877  67777655555567788888888888877632       23777778888


Q ss_pred             ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK  141 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  141 (157)
                      |.+.                 .+|..+..+++|++|++++|++.+..+..+..+++|+.|++++|++...
T Consensus       122 N~l~-----------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          122 NKLT-----------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             SCCC-----------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             Cccc-----------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            8776                 5777788888888888888888866666778888888888888887654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.76  E-value=4.9e-18  Score=128.66  Aligned_cols=156  Identities=17%  Similarity=0.142  Sum_probs=96.2

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee------------------
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD------------------   60 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~------------------   60 (157)
                      |++|+|++|.+++..+..|..+++|++|  ..|.+.+..+..+..+++|++|++++|.+...                  
T Consensus        90 L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A           90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             CCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             CCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence            4667777777775555666667777777  56666655455566666677777766665421                  


Q ss_pred             --------------cceeeeeecccccccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCCh
Q 039394           61 --------------IIIVSMIDLQMVQKKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPE  120 (157)
Q Consensus        61 --------------~~~l~~l~l~~n~l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  120 (157)
                                    +++|+.|++++|.+...+.+..+..++++      +.+..|..+..+++|+.|++++|++.+..+.
T Consensus       170 ~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  249 (440)
T 3zyj_A          170 LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN  249 (440)
T ss_dssp             CTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             CCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh
Confidence                          11445555555555544433333333333      4444566677777777777777777766677


Q ss_pred             hhhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394          121 GISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY  156 (157)
Q Consensus       121 ~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~  156 (157)
                      .+..+++|+.|++++|.+++..+..    +.++.++++.+
T Consensus       250 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred             hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence            7777777777777777777544433    56666666543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.76  E-value=1.4e-17  Score=118.83  Aligned_cols=137  Identities=23%  Similarity=0.176  Sum_probs=72.7

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~   71 (157)
                      |++|++++|.+++ + +.+..+++|++|  .+|.+.+..+..+..+++|++|++++|.+++..       ++++.|++++
T Consensus        65 L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  142 (272)
T 3rfs_A           65 VRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH  142 (272)
T ss_dssp             CCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC
Confidence            3455555555553 2 244555555555  455555444444555555555555555554221       2555555555


Q ss_pred             ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CC
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TK  147 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~  147 (157)
                      |.+.+.                .+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..|..    +.
T Consensus       143 n~l~~~----------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (272)
T 3rfs_A          143 NQLQSL----------------PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS  206 (272)
T ss_dssp             SCCCCC----------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             CccCcc----------------CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence            555432                3333455666666666666666555555556666666666666666544432    45


Q ss_pred             cccccCCC
Q 039394          148 LQTLDASS  155 (157)
Q Consensus       148 l~~l~~~~  155 (157)
                      ++.++++.
T Consensus       207 L~~L~l~~  214 (272)
T 3rfs_A          207 LQYIWLHD  214 (272)
T ss_dssp             CCEEECCS
T ss_pred             CCEEEccC
Confidence            55555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.8e-17  Score=115.07  Aligned_cols=121  Identities=17%  Similarity=0.165  Sum_probs=59.8

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeecccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQMV   72 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~n   72 (157)
                      +.|++++|.+++..+..+..+++|++|  .+|.+.+..|..|..+++|++|++++|.+++.       +++++.|++++|
T Consensus        35 ~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N  114 (220)
T 2v9t_B           35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN  114 (220)
T ss_dssp             CEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCC
Confidence            344555555543333344445555555  44444444444455555555555555544311       124444445554


Q ss_pred             cccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcc
Q 039394           73 QKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKL  138 (157)
Q Consensus        73 ~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l  138 (157)
                      .+.+                ..|..+..+++|++|++++|++.+..+..+..+++|+.+++++|++
T Consensus       115 ~l~~----------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          115 KINC----------------LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCCC----------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCE----------------eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            4442                2344455555555555555555544444555555555555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=2.2e-17  Score=114.56  Aligned_cols=121  Identities=16%  Similarity=0.084  Sum_probs=62.2

Q ss_pred             EEECcCCccccccC-cchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeecccc
Q 039394            3 YLDLSDNQLSEEIP-HCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQMV   72 (157)
Q Consensus         3 ~L~L~~n~l~~~~p-~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~n   72 (157)
                      +|++++|.+++..+ ..+..+++|++|  .+|.+.+..+..+..+++|++|++++|.+++..       ++++.|++++|
T Consensus        36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  115 (220)
T 2v70_A           36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN  115 (220)
T ss_dssp             EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred             EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence            44555555543322 224445555555  444444444444555555555555555444221       14444555555


Q ss_pred             cccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394           73 QKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        73 ~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                      .+.+                ..|..+..+++|++|++++|++.+..|..+..+++|+.|++++|++.
T Consensus       116 ~l~~----------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          116 RITC----------------VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCCC----------------BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             cCCe----------------ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            5442                23455556666666666666666555666666666666666666654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.74  E-value=5.4e-18  Score=128.45  Aligned_cols=58  Identities=24%  Similarity=0.410  Sum_probs=32.1

Q ss_pred             CcEEECcCCccccccCcc--hhcccccccc--ccccceeecCcc-CcCCCCCCEEEccCCcce
Q 039394            1 MEYLDLSDNQLSEEIPHC--SRYWQSLKVL--KSNHINGCVPIR-LCYVRPVQVLDISYSSIL   58 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~--~~~l~~L~~L--~~n~~~~~~p~~-~~~l~~L~~L~l~~n~~~   58 (157)
                      |++|++++|.+++.++..  +..+++|++|  ..|.+.+..|.. +..+++|++|++++|.+.
T Consensus       105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A          105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            455666666665433333  5556666666  555555444443 555666666666665554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=5.5e-17  Score=112.58  Aligned_cols=135  Identities=21%  Similarity=0.209  Sum_probs=114.7

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeecccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQMV   72 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~n   72 (157)
                      +.+++++++++ .+|..+.  ++++.|  .+|.+.+..+..+..+++|++|++++|.+++..|       +++.|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            46788999988 6776554  678888  8889988777789999999999999999986533       8999999999


Q ss_pred             cccceEEEceeeeecccccccccc-ccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CC
Q 039394           73 QKKNSIAIINVVVVGELFKRPIPT-KIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TK  147 (157)
Q Consensus        73 ~l~~~~~~~~~~~l~~~~~~~~p~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~  147 (157)
                      .+.                 .+|. .+..+++|++|++++|++.+..|..+..+++|+.|++++|.+.+..+..    +.
T Consensus        91 ~l~-----------------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  153 (220)
T 2v9t_B           91 KIT-----------------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA  153 (220)
T ss_dssp             CCC-----------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             cCC-----------------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCC
Confidence            998                 4554 4688999999999999999888999999999999999999999776654    77


Q ss_pred             cccccCCCC
Q 039394          148 LQTLDASSY  156 (157)
Q Consensus       148 l~~l~~~~~  156 (157)
                      ++.++++.+
T Consensus       154 L~~L~L~~N  162 (220)
T 2v9t_B          154 IQTMHLAQN  162 (220)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEEeCCC
Confidence            888888765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.74  E-value=8.1e-18  Score=128.42  Aligned_cols=154  Identities=16%  Similarity=0.138  Sum_probs=117.2

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~   71 (157)
                      +++|++++|.+++..+..|..+++|++|  ..|.+.+..|..+..+++|++|++++|.+++.       +++|+.|++++
T Consensus        34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  113 (477)
T 2id5_A           34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE  113 (477)
T ss_dssp             CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred             CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence            5788999999997778888899999999  78888887788899999999999999887632       23788899999


Q ss_pred             ccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394           72 VQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP  143 (157)
Q Consensus        72 n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  143 (157)
                      |.+....  .+..+..++++      +.+..|..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+.+..+
T Consensus       114 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~  193 (477)
T 2id5_A          114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD  193 (477)
T ss_dssp             SCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred             CccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence            9887654  44445555544      444556678888888888888888876666678888888888888888776555


Q ss_pred             CC----CCcccccCC
Q 039394          144 SG----TKLQTLDAS  154 (157)
Q Consensus       144 ~~----~~l~~l~~~  154 (157)
                      ..    +.++.|+++
T Consensus       194 ~~~~~l~~L~~L~l~  208 (477)
T 2id5_A          194 YSFKRLYRLKVLEIS  208 (477)
T ss_dssp             TCSCSCTTCCEEEEE
T ss_pred             hhcccCcccceeeCC
Confidence            33    555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.74  E-value=2.2e-17  Score=116.48  Aligned_cols=125  Identities=20%  Similarity=0.178  Sum_probs=110.0

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~   71 (157)
                      |++|++++|.+++..+..+..+++|++|  .+|.+.+..+..+..+++|++|++++|.+++.       +++++.|++++
T Consensus        61 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  140 (251)
T 3m19_A           61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT  140 (251)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC
Confidence            6899999999998888889999999999  88999877778889999999999999998743       33889999999


Q ss_pred             ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK  141 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  141 (157)
                      |.+.+                ..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.+.
T Consensus       141 N~l~~----------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          141 NQLQS----------------IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SCCCC----------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CcCCc----------------cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99983                2344688999999999999999987788899999999999999999765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.74  E-value=2.9e-18  Score=135.36  Aligned_cols=153  Identities=18%  Similarity=0.238  Sum_probs=127.9

Q ss_pred             CcEEECcCCccccc-----------------cCcchh--cccccccc--ccccceeecCccCcCCCCCCEEEccCCc-ce
Q 039394            1 MEYLDLSDNQLSEE-----------------IPHCSR--YWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSS-IL   58 (157)
Q Consensus         1 L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~-~~   58 (157)
                      |++|++++|.+++.                 +|+.++  .+++|++|  ..|.+.+.+|+.++.+++|++|++++|+ ++
T Consensus       208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~  287 (636)
T 4eco_A          208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS  287 (636)
T ss_dssp             CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred             CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence            68999999999985                 999988  99999999  8888999999999999999999999998 87


Q ss_pred             e-ec-------------ceeeeeecccccccceEE---Eceeeeeccc------cccccccccccccCCCEEecCCCccC
Q 039394           59 G-DI-------------IIVSMIDLQMVQKKNSIA---IINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPI  115 (157)
Q Consensus        59 ~-~~-------------~~l~~l~l~~n~l~~~~~---~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~  115 (157)
                      + .+             ++++.|++++|.+...+.   +..+..++++      +.+.+| .+..+++|++|++++|++.
T Consensus       288 ~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~  366 (636)
T 4eco_A          288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT  366 (636)
T ss_dssp             HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE
T ss_pred             cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc
Confidence            6 33             478999999999986543   5555555555      666788 7888888999999999888


Q ss_pred             CCCChhhhcCCC-CCeEEccCCcceecCCCC------CCcccccCCCC
Q 039394          116 GKIPEGISQLGL-LGVLSLSNNKLSGKIPSG------TKLQTLDASSY  156 (157)
Q Consensus       116 ~~~p~~~~~l~~-L~~L~ls~N~l~~~~p~~------~~l~~l~~~~~  156 (157)
                       .+|..+..+++ |+.|++++|.++ .+|..      .+++.|+++.+
T Consensus       367 -~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N  412 (636)
T 4eco_A          367 -EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYN  412 (636)
T ss_dssp             -ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSS
T ss_pred             -cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCC
Confidence             78888888888 999999999988 66765      25778887764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.74  E-value=2.3e-17  Score=118.94  Aligned_cols=136  Identities=19%  Similarity=0.154  Sum_probs=62.4

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee------ecceeeeeeccccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG------DIIIVSMIDLQMVQ   73 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~------~~~~l~~l~l~~n~   73 (157)
                      ++|++++|.+++..+..+..+++|++|  ..|.+.+..+.  ..+++|++|++++|.++.      .+++++.|++++|.
T Consensus        34 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~  111 (290)
T 1p9a_G           34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR  111 (290)
T ss_dssp             CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc
Confidence            445555555554444555555555555  44444432221  455555555555555441      12255555555555


Q ss_pred             ccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394           74 KKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        74 l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                      +.+..  .+..+..++++      +....+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+.
T Consensus       112 l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            55433  22333333332      22222233344445555555555544333333444555555555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.73  E-value=1.2e-17  Score=126.83  Aligned_cols=155  Identities=19%  Similarity=0.142  Sum_probs=117.7

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~   71 (157)
                      +++|++++|.+++..|..|..+++|++|  ..|.+.+..+..+..+++|++|++++|.+++.       +++|+.|++++
T Consensus        77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  156 (452)
T 3zyi_A           77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN  156 (452)
T ss_dssp             CSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCS
T ss_pred             ccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCC
Confidence            5789999999998888999999999999  88999988889999999999999999998743       34899999999


Q ss_pred             ccccceE--EEceeeeeccc-------ccc-----------------------ccccccccccCCCEEecCCCccCCCCC
Q 039394           72 VQKKNSI--AIINVVVVGEL-------FKR-----------------------PIPTKIDQLTMLHALDLSRNQPIGKIP  119 (157)
Q Consensus        72 n~l~~~~--~~~~~~~l~~~-------~~~-----------------------~~p~~~~~l~~L~~L~l~~N~l~~~~p  119 (157)
                      |.+....  .+..+..++.+       +..                       .+| .+..+++|+.|++++|.+.+..|
T Consensus       157 N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~  235 (452)
T 3zyi_A          157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRP  235 (452)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECG
T ss_pred             CCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCc
Confidence            9988654  23333333332       000                       122 24556667777777777776677


Q ss_pred             hhhhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394          120 EGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY  156 (157)
Q Consensus       120 ~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~  156 (157)
                      ..+..+++|+.|++++|.+.+..|..    +.++.||++.+
T Consensus       236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN  276 (452)
T ss_dssp             GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence            77888888888888888887776654    67777777754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.73  E-value=2.4e-17  Score=118.85  Aligned_cols=153  Identities=17%  Similarity=0.115  Sum_probs=124.9

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----ecceeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~   73 (157)
                      ++++++++++++ .+|..+.  ++++.|  .+|.+.+..+..+..+++|++|++++|.+++     .+++++.|++++|.
T Consensus        12 l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~   88 (290)
T 1p9a_G           12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ   88 (290)
T ss_dssp             CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSC
T ss_pred             ccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCc
Confidence            578999999998 6676554  678888  8899988888899999999999999999874     34489999999999


Q ss_pred             ccceE-EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC-
Q 039394           74 KKNSI-AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-  145 (157)
Q Consensus        74 l~~~~-~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-  145 (157)
                      +...+ .+..+..++++      +.+..|..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+.. 
T Consensus        89 l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~  168 (290)
T 1p9a_G           89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL  168 (290)
T ss_dssp             CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTT
T ss_pred             CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHh
Confidence            98776 45555555555      55555677899999999999999999777778899999999999999998654433 


Q ss_pred             ---CCcccccCCCC
Q 039394          146 ---TKLQTLDASSY  156 (157)
Q Consensus       146 ---~~l~~l~~~~~  156 (157)
                         ++++.|+++.+
T Consensus       169 ~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          169 NGLENLDTLLLQEN  182 (290)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             cCcCCCCEEECCCC
Confidence               77888887764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.73  E-value=1.9e-17  Score=125.38  Aligned_cols=156  Identities=16%  Similarity=0.116  Sum_probs=109.7

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~   71 (157)
                      ++.|+|++|++++..+..+..+++|++|  ..|.+.+..+..|..+++|++|++++|.+++.       +++|+.|++++
T Consensus        66 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  145 (440)
T 3zyj_A           66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN  145 (440)
T ss_dssp             CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCS
T ss_pred             CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCC
Confidence            5789999999998888899999999999  88889888888999999999999999988743       23899999999


Q ss_pred             ccccceE--EEceeeeeccc-------cccccccc----------------------cccccCCCEEecCCCccCCCCCh
Q 039394           72 VQKKNSI--AIINVVVVGEL-------FKRPIPTK----------------------IDQLTMLHALDLSRNQPIGKIPE  120 (157)
Q Consensus        72 n~l~~~~--~~~~~~~l~~~-------~~~~~p~~----------------------~~~l~~L~~L~l~~N~l~~~~p~  120 (157)
                      |.+....  .+..+..++++       +....+..                      +..+++|+.|++++|++.+..|.
T Consensus       146 N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  225 (440)
T 3zyj_A          146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPG  225 (440)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTT
T ss_pred             CcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChh
Confidence            9988654  33444333333       11111122                      34445555666666666555566


Q ss_pred             hhhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394          121 GISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY  156 (157)
Q Consensus       121 ~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~  156 (157)
                      .+..+++|+.|++++|.+.+..+..    ++|+.||++.+
T Consensus       226 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred             hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence            6666666666666666666655543    56666666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.73  E-value=3.6e-17  Score=116.70  Aligned_cols=128  Identities=21%  Similarity=0.163  Sum_probs=110.5

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~   71 (157)
                      |++|++++|.+++..+..+..+++|++|  ..|.+.+..+..+..+++|++|++++|.+++..       ++++.|++++
T Consensus        87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  166 (272)
T 3rfs_A           87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY  166 (272)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence            6899999999997777778999999999  888888777777899999999999999987432       3899999999


Q ss_pred             ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCC
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPS  144 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~  144 (157)
                      |.+.+                ..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.+..|.
T Consensus       167 n~l~~----------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          167 NQLQS----------------LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             SCCCC----------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCcCc----------------cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            99974                2445578899999999999999988888889999999999999998876653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.73  E-value=1e-17  Score=132.22  Aligned_cols=92  Identities=20%  Similarity=0.334  Sum_probs=51.8

Q ss_pred             eeeeeecccccccceE-EEc--eeeeeccc------cccccccccccccCCCEEec------CCCccCCCCChhhhcCCC
Q 039394           63 IVSMIDLQMVQKKNSI-AII--NVVVVGEL------FKRPIPTKIDQLTMLHALDL------SRNQPIGKIPEGISQLGL  127 (157)
Q Consensus        63 ~l~~l~l~~n~l~~~~-~~~--~~~~l~~~------~~~~~p~~~~~l~~L~~L~l------~~N~l~~~~p~~~~~l~~  127 (157)
                      +++.|++++|.+...+ .+.  .+..++++      +.+ +|..+..+++|+.|++      ++|++.+.+|..+..+++
T Consensus       489 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~  567 (636)
T 4eco_A          489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS  567 (636)
T ss_dssp             GCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred             CccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence            3455555555555433 222  33333333      333 5666666666666666      345556666666666666


Q ss_pred             CCeEEccCCcceecCCCC--CCcccccCCCC
Q 039394          128 LGVLSLSNNKLSGKIPSG--TKLQTLDASSY  156 (157)
Q Consensus       128 L~~L~ls~N~l~~~~p~~--~~l~~l~~~~~  156 (157)
                      |+.|++++|.+ +.+|..  +.++.||++.+
T Consensus       568 L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N  597 (636)
T 4eco_A          568 LTQLQIGSNDI-RKVNEKITPNISVLDIKDN  597 (636)
T ss_dssp             CCEEECCSSCC-CBCCSCCCTTCCEEECCSC
T ss_pred             CCEEECCCCcC-CccCHhHhCcCCEEECcCC
Confidence            66666666666 455554  56666666554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.73  E-value=5.5e-17  Score=111.35  Aligned_cols=127  Identities=21%  Similarity=0.171  Sum_probs=95.9

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~   71 (157)
                      |++|++++|.+++..+..+..+++|++|  .+|.+.+..+..+..+++|++|++++|.+++.       +++++.|++++
T Consensus        30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  109 (208)
T 2o6s_A           30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT  109 (208)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence            4678888888886556667788888888  67777765555677888888888888877632       23778888888


Q ss_pred             ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP  143 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  143 (157)
                      |.+.+                ..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.+..|
T Consensus       110 N~l~~----------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          110 NQLQS----------------LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             SCCCC----------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             CcCcc----------------cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            88763                234446788889999999998886666668888889999999888776655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.73  E-value=1.6e-17  Score=121.03  Aligned_cols=152  Identities=19%  Similarity=0.095  Sum_probs=102.6

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec--ceeeeeecccccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI--IIVSMIDLQMVQKKN   76 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~--~~l~~l~l~~n~l~~   76 (157)
                      |++|++++|.+++..|..+..+++|++|  ..|.+.+..+  +..+++|++|++++|.+++..  ++++.|++++|.+.+
T Consensus        36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~  113 (317)
T 3o53_A           36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR  113 (317)
T ss_dssp             CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSE
T ss_pred             CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCC
Confidence            5789999999998777889999999999  8888886554  889999999999999987532  477788888887776


Q ss_pred             eEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhh-hcCCCCCeEEccCCcceecCCCC--CC
Q 039394           77 SIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG--TK  147 (157)
Q Consensus        77 ~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~~--~~  147 (157)
                      ... ..+..++++      +.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+..  ++
T Consensus       114 ~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~  192 (317)
T 3o53_A          114 VSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK  192 (317)
T ss_dssp             EEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTT
T ss_pred             cCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccccccc
Confidence            541 111222222      444445556666667777777776665555544 35566666666666665442221  55


Q ss_pred             cccccCCC
Q 039394          148 LQTLDASS  155 (157)
Q Consensus       148 l~~l~~~~  155 (157)
                      ++.|+++.
T Consensus       193 L~~L~Ls~  200 (317)
T 3o53_A          193 LKTLDLSS  200 (317)
T ss_dssp             CCEEECCS
T ss_pred             CCEEECCC
Confidence            55555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.73  E-value=6.6e-18  Score=132.15  Aligned_cols=128  Identities=19%  Similarity=0.068  Sum_probs=93.0

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~   71 (157)
                      +++|++++|.+++..+..+..+++|++|  .+|.+.+..|..|..+++|++|++++|.+++..|       +|+.|++++
T Consensus        34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  113 (606)
T 3vq2_A           34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE  113 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTT
T ss_pred             cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccC
Confidence            5788999999987777788899999999  7888888778888999999999999998875533       888999999


Q ss_pred             ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCC-CCChhhhcCCCCCeEEccCCcceecCCC
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIG-KIPEGISQLGLLGVLSLSNNKLSGKIPS  144 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~  144 (157)
                      |.+.+.                .+..++.+++|++|++++|.+.+ .+|..++.+++|++|++++|.+.+..|.
T Consensus       114 n~l~~~----------------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A          114 TKLASL----------------ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             SCCCCS----------------SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred             Cccccc----------------cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence            988743                22445555566666666665553 3455556666666666666655554444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.72  E-value=5.1e-17  Score=118.71  Aligned_cols=76  Identities=16%  Similarity=0.175  Sum_probs=56.0

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-----eeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-----IVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-----~l~~l~l~~n~   73 (157)
                      +++|++++|.+++..+..+..+++|++|  ..|.+.+..|..+..+++|++|++++|.++. +|     +++.|++++|.
T Consensus        54 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~~L~~L~l~~n~  132 (330)
T 1xku_A           54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENE  132 (330)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCCTTCCEEECCSSC
T ss_pred             CeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhcccccEEECCCCc
Confidence            4678888888886666678888888888  7778877778888888888888888887752 22     55556666555


Q ss_pred             ccce
Q 039394           74 KKNS   77 (157)
Q Consensus        74 l~~~   77 (157)
                      +.+.
T Consensus       133 l~~~  136 (330)
T 1xku_A          133 ITKV  136 (330)
T ss_dssp             CCBB
T ss_pred             cccc
Confidence            5543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=1.1e-16  Score=111.11  Aligned_cols=136  Identities=21%  Similarity=0.155  Sum_probs=113.9

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecC-ccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVP-IRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM   71 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~   71 (157)
                      +.+++++|.++ .+|..+.  ..+++|  ..|.+.+..+ ..+..+++|++|++++|.+++..+       +++.|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            47899999998 6776654  346777  8888887644 458899999999999999875433       899999999


Q ss_pred             ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CC
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TK  147 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~  147 (157)
                      |.+.+                ..+..+..+++|++|++++|++.+..|..+..+++|+.|++++|.+++..|..    ++
T Consensus        91 N~l~~----------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  154 (220)
T 2v70_A           91 NRLEN----------------VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS  154 (220)
T ss_dssp             SCCCC----------------CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTT
T ss_pred             CccCc----------------cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCC
Confidence            99974                34556889999999999999999888999999999999999999999887766    77


Q ss_pred             cccccCCCC
Q 039394          148 LQTLDASSY  156 (157)
Q Consensus       148 l~~l~~~~~  156 (157)
                      ++.|+++.+
T Consensus       155 L~~L~L~~N  163 (220)
T 2v70_A          155 LSTLNLLAN  163 (220)
T ss_dssp             CCEEECCSC
T ss_pred             CCEEEecCc
Confidence            888888765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.72  E-value=1.9e-17  Score=129.49  Aligned_cols=155  Identities=17%  Similarity=0.069  Sum_probs=123.9

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~   71 (157)
                      +++|++++|.+++..|..+..+++|++|  ..|.+.+..|..|..+++|++|++++|.+.+..|       +++.|++++
T Consensus        35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  114 (606)
T 3t6q_A           35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ  114 (606)
T ss_dssp             CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTT
T ss_pred             CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccc
Confidence            5789999999998888899999999999  7888888889999999999999999999875543       889999999


Q ss_pred             ccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCC--eEEccCCcceec
Q 039394           72 VQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLG--VLSLSNNKLSGK  141 (157)
Q Consensus        72 n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~--~L~ls~N~l~~~  141 (157)
                      |.+.+..  .+..+..++++      +.+..+..+..+++|++|++++|.+.+..|..++.+++++  .+++++|.+.+.
T Consensus       115 n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~  194 (606)
T 3t6q_A          115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI  194 (606)
T ss_dssp             SCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred             cCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc
Confidence            9998753  55666666665      3332223344488999999999998877788889999998  889999999887


Q ss_pred             CCCC---CCcccccCCC
Q 039394          142 IPSG---TKLQTLDASS  155 (157)
Q Consensus       142 ~p~~---~~l~~l~~~~  155 (157)
                      .|..   ..++.++++.
T Consensus       195 ~~~~~~~~~L~~L~l~~  211 (606)
T 3t6q_A          195 EPGAFDSAVFQSLNFGG  211 (606)
T ss_dssp             CTTTTTTCEEEEEECTT
T ss_pred             ChhHhhhccccccccCC
Confidence            7766   5566666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.72  E-value=1.4e-17  Score=130.29  Aligned_cols=153  Identities=19%  Similarity=0.136  Sum_probs=88.5

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecC-ccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVP-IRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM   71 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~   71 (157)
                      ++|++++|.++ .+|..+..+++|++|  ..|.+.+..| ..+..+++|++|++++|.+.+..|       +++.|++++
T Consensus       379 ~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  457 (606)
T 3vq2_A          379 RHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG  457 (606)
T ss_dssp             CEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred             cEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence            44555555544 234445555555555  4555554444 455566666666666666554332       566666666


Q ss_pred             ccccce-E--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecC
Q 039394           72 VQKKNS-I--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKI  142 (157)
Q Consensus        72 n~l~~~-~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~  142 (157)
                      |.+.+. .  .+..+..++.+      +.+..|..+..+++|++|++++|++.+..|..+..+++|+.|++++|.++ .+
T Consensus       458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~  536 (606)
T 3vq2_A          458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TS  536 (606)
T ss_dssp             CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CE
T ss_pred             CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-cc
Confidence            666552 1  34444444444      44455666677777777777777777666777777777777777777766 34


Q ss_pred             CCC----C-CcccccCCCC
Q 039394          143 PSG----T-KLQTLDASSY  156 (157)
Q Consensus       143 p~~----~-~l~~l~~~~~  156 (157)
                      |..    + .++.++++.+
T Consensus       537 p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          537 KGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             ESCGGGSCTTCCEEECCSC
T ss_pred             CHhHhhhcccCcEEEccCC
Confidence            443    2 3666666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.72  E-value=1.3e-17  Score=130.46  Aligned_cols=154  Identities=19%  Similarity=0.167  Sum_probs=75.4

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCcc-CcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIR-LCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM   71 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~-~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~   71 (157)
                      ++|++++|.+.+..|..+..+++|++|  ..|.+.+..+.. +..+++|++|++++|.+.+.       +++++.|++++
T Consensus       379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  458 (606)
T 3t6q_A          379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG  458 (606)
T ss_dssp             CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCC
Confidence            344444444443334444444444444  334443332222 44444444444444444322       12455555555


Q ss_pred             ccccceE-----EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394           72 VQKKNSI-----AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus        72 n~l~~~~-----~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                      |.+.+..     .+..+..++.+      +.+..|..+..+++|++|++++|++.+..|+.+..++.+ .|++++|.+++
T Consensus       459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~  537 (606)
T 3t6q_A          459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI  537 (606)
T ss_dssp             CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred             CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence            5554311     12223333333      334445556666666666666666666666666666666 66666666665


Q ss_pred             cCCCC----CCcccccCCCC
Q 039394          141 KIPSG----TKLQTLDASSY  156 (157)
Q Consensus       141 ~~p~~----~~l~~l~~~~~  156 (157)
                      ..|..    +.++.++++.+
T Consensus       538 ~~~~~~~~l~~L~~L~l~~N  557 (606)
T 3t6q_A          538 ILPSLLPILSQQRTINLRQN  557 (606)
T ss_dssp             CCGGGHHHHHTSSEEECTTC
T ss_pred             cCHhhcccCCCCCEEeCCCC
Confidence            55543    55566665543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.72  E-value=5.4e-17  Score=122.96  Aligned_cols=129  Identities=18%  Similarity=0.085  Sum_probs=107.4

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~   71 (157)
                      |++|++++|.+.+.+|..+..+++|++|  ..|.+.+..|..+..+++|++|++++|.+.+..       ++++.|++++
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  356 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY  356 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred             ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence            5678888888888788888888888888  788888777888888888999999888886543       3788888888


Q ss_pred             ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG  145 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~  145 (157)
                      |.+.+                ..|.++..+++|++|++++|++.+..+..+..+++|+.|++++|++.+..|..
T Consensus       357 N~l~~----------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          357 NHIRA----------------LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             SCCCE----------------ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             Ccccc----------------cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence            88863                45778899999999999999998766677889999999999999999888754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.72  E-value=9.5e-18  Score=121.32  Aligned_cols=156  Identities=22%  Similarity=0.235  Sum_probs=82.7

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--cccccee--ecCccCcCCCCCCEEEccCCcc-------------------
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHING--CVPIRLCYVRPVQVLDISYSSI-------------------   57 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~--~~p~~~~~l~~L~~L~l~~n~~-------------------   57 (157)
                      |++|++++|.++...+..+..+++|++|  .+|.+..  ..+..+..+++|++|++++|.+                   
T Consensus        30 l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~  109 (306)
T 2z66_A           30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ  109 (306)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECT
T ss_pred             CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECC
Confidence            4566666666663333335666666666  4554442  1133333444444444444444                   


Q ss_pred             ----eee--------cceeeeeecccccccceE--EEceeeeeccc------ccc-ccccccccccCCCEEecCCCccCC
Q 039394           58 ----LGD--------IIIVSMIDLQMVQKKNSI--AIINVVVVGEL------FKR-PIPTKIDQLTMLHALDLSRNQPIG  116 (157)
Q Consensus        58 ----~~~--------~~~l~~l~l~~n~l~~~~--~~~~~~~l~~~------~~~-~~p~~~~~l~~L~~L~l~~N~l~~  116 (157)
                          ++.        +++++.|++++|.+.+..  .+..+..++++      +.+ ..|..+..+++|++|++++|++.+
T Consensus       110 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  189 (306)
T 2z66_A          110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ  189 (306)
T ss_dssp             TSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             CCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC
Confidence                321        114455555555444322  22233333333      222 355666667777777777777766


Q ss_pred             CCChhhhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394          117 KIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY  156 (157)
Q Consensus       117 ~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~  156 (157)
                      ..|..+..+++|+.|++++|.+.+..+..    +.++.||++.+
T Consensus       190 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred             cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence            66666777777777777777766543322    56666666543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.72  E-value=4.8e-17  Score=118.98  Aligned_cols=58  Identities=28%  Similarity=0.244  Sum_probs=43.2

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcce
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL   58 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~   58 (157)
                      |++|++++|.+++..|..+..+++|++|  ..|.+.+..|..+..+++|++|++++|.++
T Consensus        56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  115 (332)
T 2ft3_A           56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV  115 (332)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC
T ss_pred             CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC
Confidence            4677888888776666677777888877  677777666777777777777777777665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.72  E-value=7e-17  Score=107.33  Aligned_cols=120  Identities=18%  Similarity=0.162  Sum_probs=101.9

Q ss_pred             CcEEECcCCccc-cccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeecc
Q 039394            1 MEYLDLSDNQLS-EEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQ   70 (157)
Q Consensus         1 L~~L~L~~n~l~-~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~   70 (157)
                      |++|++++|.++ +.+|..+..+++|++|  ..|.+.+.  ..+..+++|++|++++|.+.+.+|       +++.|+++
T Consensus        26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred             CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence            578999999998 7888888999999999  78888754  778999999999999999986443       88999999


Q ss_pred             cccccceEEEceeeeeccccccccc--cccccccCCCEEecCCCccCCCCC---hhhhcCCCCCeEEccCCcce
Q 039394           71 MVQKKNSIAIINVVVVGELFKRPIP--TKIDQLTMLHALDLSRNQPIGKIP---EGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        71 ~n~l~~~~~~~~~~~l~~~~~~~~p--~~~~~l~~L~~L~l~~N~l~~~~p---~~~~~l~~L~~L~ls~N~l~  139 (157)
                      +|.+.+                 +|  ..+..+++|++|++++|.+.+..+   ..+..+++|+.|++++|.+.
T Consensus       104 ~N~l~~-----------------~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          104 GNKLKD-----------------ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             SSSCCS-----------------SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCccCc-----------------chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            999873                 44  678889999999999999886555   47889999999999999876

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.71  E-value=6.7e-17  Score=126.40  Aligned_cols=129  Identities=22%  Similarity=0.126  Sum_probs=106.6

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~   71 (157)
                      +++|||++|.+++..+.+|..+++|++|  ..|.+.+..|+.|..+++|++|++++|++++..       ++|+.|++++
T Consensus        54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~  133 (635)
T 4g8a_A           54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE  133 (635)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTT
T ss_pred             CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCC
Confidence            5789999999997777889999999999  888898877888999999999999999987432       3889999999


Q ss_pred             ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCC-CCChhhhcCCCCCeEEccCCcceecCCCC
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIG-KIPEGISQLGLLGVLSLSNNKLSGKIPSG  145 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~  145 (157)
                      |.+.+                ..+..++.+++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+..|..
T Consensus       134 N~l~~----------------l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  192 (635)
T 4g8a_A          134 TNLAS----------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  192 (635)
T ss_dssp             SCCCC----------------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             CcCCC----------------CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence            99873                233457888889999999998865 46778888888999999998888766544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.71  E-value=1.6e-17  Score=120.53  Aligned_cols=34  Identities=18%  Similarity=0.229  Sum_probs=18.8

Q ss_pred             CcEEECcCCccccccCcch--hcccccccc--ccccce
Q 039394            1 MEYLDLSDNQLSEEIPHCS--RYWQSLKVL--KSNHIN   34 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~--~~l~~L~~L--~~n~~~   34 (157)
                      |++|++++|.+.+..|..+  ..+++|++|  .+|.+.
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~  130 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA  130 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccccc
Confidence            4556666666665555554  455555555  444444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.71  E-value=1.9e-17  Score=126.34  Aligned_cols=143  Identities=18%  Similarity=0.103  Sum_probs=98.3

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~   71 (157)
                      |++|++++|.+++..|..+..+++|++|  ..|.+.+..+..+..+++|++|++++|.+.+..+       +|+.|++++
T Consensus        58 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~  137 (477)
T 2id5_A           58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD  137 (477)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC
T ss_pred             CCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC
Confidence            6788999999887778888888899988  7777776656667888889999998888765433       778888888


Q ss_pred             ccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394           72 VQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP  143 (157)
Q Consensus        72 n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  143 (157)
                      |.+....  .+..+..++++      +....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|
T Consensus       138 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  217 (477)
T 2id5_A          138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT  217 (477)
T ss_dssp             TTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred             CccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence            8877654  44444444444      333334446666677777777777665555556666666666666554443333

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.71  E-value=5.9e-17  Score=115.45  Aligned_cols=141  Identities=19%  Similarity=0.178  Sum_probs=112.7

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~   71 (157)
                      |++|++++|.++...+..+..+++|++|  ..|.+.+..+..+..+++|++|++++|.+++.       +++++.|++++
T Consensus        63 L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  142 (270)
T 2o6q_A           63 LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY  142 (270)
T ss_dssp             CCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC
Confidence            6789999999985555566888999999  77888876667788899999999999988643       33888999999


Q ss_pred             ccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec
Q 039394           72 VQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK  141 (157)
Q Consensus        72 n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  141 (157)
                      |.+.+..  .+..+..++++      +....+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++...
T Consensus       143 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            9888766  35555555555      4444555688899999999999999976677789999999999999997543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.70  E-value=1.6e-17  Score=128.50  Aligned_cols=129  Identities=21%  Similarity=0.167  Sum_probs=90.5

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~   71 (157)
                      |++|++++|.+++..|..+..+++|++|  ..|.+.+..|..+..+++|++|++++|.+++..+       +++.|++++
T Consensus        28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  107 (549)
T 2z81_A           28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG  107 (549)
T ss_dssp             CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred             ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence            5789999999998888889999999999  8888888888889999999999999998875433       889999999


Q ss_pred             ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCC-hhhhcCCCCCeEEccCCcceecCCC
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP-EGISQLGLLGVLSLSNNKLSGKIPS  144 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~  144 (157)
                      |.+.+.               ..|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+.+..|.
T Consensus       108 n~l~~~---------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  166 (549)
T 2z81_A          108 NPYQTL---------------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ  166 (549)
T ss_dssp             CCCSSS---------------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             Cccccc---------------chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence            998743               223344455555555555554333332 3444555555555555555544443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.70  E-value=4.8e-17  Score=118.18  Aligned_cols=150  Identities=21%  Similarity=0.265  Sum_probs=72.8

Q ss_pred             CcEEECcCCccccccCcchhcc-----cccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----------ecc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYW-----QSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----------DII   62 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----------~~~   62 (157)
                      |++|++++|.+++. |+.+..+     ++|++|  .+|.+.+..|..+..+++|++|++++|++.+           .++
T Consensus       123 L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~  201 (312)
T 1wwl_A          123 LNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP  201 (312)
T ss_dssp             CSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT
T ss_pred             ccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCC
Confidence            34555555555543 4445444     555555  5555555555566666666666666665432           223


Q ss_pred             eeeeeecccccccceE-----EEceeeeeccc------cccccc-cccccccCCCEEecCCCccCCCCChhhhcCCCCCe
Q 039394           63 IVSMIDLQMVQKKNSI-----AIINVVVVGEL------FKRPIP-TKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGV  130 (157)
Q Consensus        63 ~l~~l~l~~n~l~~~~-----~~~~~~~l~~~------~~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~  130 (157)
                      +++.|++++|.+.+..     .+..+..++++      +.+..| ..+..+++|++|++++|++. .+|..+.  ++|+.
T Consensus       202 ~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~  278 (312)
T 1wwl_A          202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSV  278 (312)
T ss_dssp             TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEE
T ss_pred             CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceE
Confidence            5666666666665321     01111222222      222222 22333455555555555554 4444443  45555


Q ss_pred             EEccCCcceecCCCC---CCcccccCCC
Q 039394          131 LSLSNNKLSGKIPSG---TKLQTLDASS  155 (157)
Q Consensus       131 L~ls~N~l~~~~p~~---~~l~~l~~~~  155 (157)
                      |++++|.+++. |..   ++++.++++.
T Consensus       279 L~Ls~N~l~~~-p~~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          279 LDLSYNRLDRN-PSPDELPQVGNLSLKG  305 (312)
T ss_dssp             EECCSSCCCSC-CCTTTSCEEEEEECTT
T ss_pred             EECCCCCCCCC-hhHhhCCCCCEEeccC
Confidence            55555555543 222   4444555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=2.9e-17  Score=133.40  Aligned_cols=152  Identities=18%  Similarity=0.176  Sum_probs=124.9

Q ss_pred             CcEEECcCCcccc-----------------ccCcchh--cccccccc--ccccceeecCccCcCCCCCCEEEccCCc-ce
Q 039394            1 MEYLDLSDNQLSE-----------------EIPHCSR--YWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSS-IL   58 (157)
Q Consensus         1 L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~-~~   58 (157)
                      |++|+|++|.+++                 .+|+.++  .+++|++|  ..|.+.+.+|..++.+++|++|++++|+ ++
T Consensus       450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls  529 (876)
T 4ecn_A          450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS  529 (876)
T ss_dssp             CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred             CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence            6899999999998                 3898877  99999999  7888899999999999999999999998 87


Q ss_pred             e-ecc--------------eeeeeecccccccceEE---Eceeeeeccc------cccccccccccccCCCEEecCCCcc
Q 039394           59 G-DII--------------IVSMIDLQMVQKKNSIA---IINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQP  114 (157)
Q Consensus        59 ~-~~~--------------~l~~l~l~~n~l~~~~~---~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l  114 (157)
                      + .+|              +++.|++++|.+...+.   +..+..++.+      +. .+| .+..+++|+.|++++|++
T Consensus       530 g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l  607 (876)
T 4ecn_A          530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQI  607 (876)
T ss_dssp             HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCC
T ss_pred             cccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCcc
Confidence            6 444              69999999999985544   5555555555      44 677 788888889999999988


Q ss_pred             CCCCChhhhcCCC-CCeEEccCCcceecCCCC------CCcccccCCCC
Q 039394          115 IGKIPEGISQLGL-LGVLSLSNNKLSGKIPSG------TKLQTLDASSY  156 (157)
Q Consensus       115 ~~~~p~~~~~l~~-L~~L~ls~N~l~~~~p~~------~~l~~l~~~~~  156 (157)
                      . .+|..+..+++ |+.|++++|.+. .+|..      ..++.|+++.+
T Consensus       608 ~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N  654 (876)
T 4ecn_A          608 E-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN  654 (876)
T ss_dssp             S-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS
T ss_pred             c-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC
Confidence            8 88888888888 999999999888 66655      23777877764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.69  E-value=3.3e-17  Score=120.80  Aligned_cols=138  Identities=19%  Similarity=0.203  Sum_probs=94.9

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~   71 (157)
                      |++|++++|++++..+..+..+++|++|  .+|.+.+..|..+..+++|++|++++|.+++.       +++++.|++++
T Consensus        54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  133 (353)
T 2z80_A           54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG  133 (353)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTT
T ss_pred             CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCC
Confidence            5789999999986666688889999999  78888877788899999999999999988632       33888999999


Q ss_pred             ccccceE---EEceeeeeccc-------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcc
Q 039394           72 VQKKNSI---AIINVVVVGEL-------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKL  138 (157)
Q Consensus        72 n~l~~~~---~~~~~~~l~~~-------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l  138 (157)
                      |.+.+..   .+..+..++++       +....|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus       134 n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             CCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            9887543   13333333333       1222234455555666666666666555555666666666666666655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.69  E-value=4.1e-17  Score=126.58  Aligned_cols=145  Identities=21%  Similarity=0.112  Sum_probs=101.8

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~   71 (157)
                      +++|++++|.+++..+.+|..+++|++|  .+|.+.+..+..|..+++|++|++++|.+++..       ++++.|++++
T Consensus        30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  109 (570)
T 2z63_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE  109 (570)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccc
Confidence            5789999999997777889999999999  788888777888999999999999999887543       3889999999


Q ss_pred             ccccceE--EEceeeeeccc------ccc-ccccccccccCCCEEecCCCccCCCCChhhhcCCCC----CeEEccCCcc
Q 039394           72 VQKKNSI--AIINVVVVGEL------FKR-PIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLL----GVLSLSNNKL  138 (157)
Q Consensus        72 n~l~~~~--~~~~~~~l~~~------~~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L----~~L~ls~N~l  138 (157)
                      |.+.+..  .+..+..++++      +.+ .+|..+..+++|++|++++|++.+..+..++.+++|    ..+++++|.+
T Consensus       110 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l  189 (570)
T 2z63_A          110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM  189 (570)
T ss_dssp             SCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred             cccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCc
Confidence            9887543  23444444443      222 345556666666666666666655555555555555    5666666666


Q ss_pred             eecCCCC
Q 039394          139 SGKIPSG  145 (157)
Q Consensus       139 ~~~~p~~  145 (157)
                      .+..|..
T Consensus       190 ~~~~~~~  196 (570)
T 2z63_A          190 NFIQPGA  196 (570)
T ss_dssp             CEECTTT
T ss_pred             eecCHHH
Confidence            5554443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.69  E-value=6.5e-17  Score=115.40  Aligned_cols=139  Identities=18%  Similarity=0.116  Sum_probs=79.1

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~   71 (157)
                      |++|++++|.+++..+..+..+++|++|  .+|.+.+..+..+..+++|++|++++|.+.+.       +++++.|++++
T Consensus        54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  133 (276)
T 2z62_A           54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH  133 (276)
T ss_dssp             CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred             CcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC
Confidence            5677778877776556667777777777  66777766666677777777777777766532       22666777777


Q ss_pred             ccccce--E-EEceeeeeccc------cccccccccccccCCC----EEecCCCccCCCCChhhhcCCCCCeEEccCCcc
Q 039394           72 VQKKNS--I-AIINVVVVGEL------FKRPIPTKIDQLTMLH----ALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKL  138 (157)
Q Consensus        72 n~l~~~--~-~~~~~~~l~~~------~~~~~p~~~~~l~~L~----~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l  138 (157)
                      |.+.+.  + .+..+..++++      +.+..+..+..+..++    .+++++|.+.+..+..+. ..+|+.|++++|.+
T Consensus       134 n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l  212 (276)
T 2z62_A          134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQL  212 (276)
T ss_dssp             SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCC
T ss_pred             CccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCce
Confidence            776652  2 34444444443      3333334444444444    455555555433222222 22455555555555


Q ss_pred             ee
Q 039394          139 SG  140 (157)
Q Consensus       139 ~~  140 (157)
                      ++
T Consensus       213 ~~  214 (276)
T 2z62_A          213 KS  214 (276)
T ss_dssp             SC
T ss_pred             ee
Confidence            43

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.69  E-value=4.3e-17  Score=126.46  Aligned_cols=155  Identities=24%  Similarity=0.227  Sum_probs=100.2

Q ss_pred             CcEEECcCCcccccc--Ccchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec--------ceeeeee
Q 039394            1 MEYLDLSDNQLSEEI--PHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI--------IIVSMID   68 (157)
Q Consensus         1 L~~L~L~~n~l~~~~--p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~--------~~l~~l~   68 (157)
                      |++|++++|.+++..  |..+..+++|++|  .+|.+.+..+ .+..+++|++|++++|.+.+..        ++++.|+
T Consensus       349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  427 (570)
T 2z63_A          349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD  427 (570)
T ss_dssp             CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred             CCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence            456777777766432  5556667777777  5666554333 3666777777777777665332        2666677


Q ss_pred             cccccccceE--EEceeeeeccc------cc-cccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394           69 LQMVQKKNSI--AIINVVVVGEL------FK-RPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        69 l~~n~l~~~~--~~~~~~~l~~~------~~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                      +++|.+.+..  .+..+..++++      +. +.+|..+..+++|++|++++|++.+..|..+..+++|+.|++++|.++
T Consensus       428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  507 (570)
T 2z63_A          428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK  507 (570)
T ss_dssp             CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence            7777665543  33334444443      22 356777777888888888888877777777778888888888888877


Q ss_pred             ecCCCC----CCcccccCCCC
Q 039394          140 GKIPSG----TKLQTLDASSY  156 (157)
Q Consensus       140 ~~~p~~----~~l~~l~~~~~  156 (157)
                      +..|..    +.++.++++.+
T Consensus       508 ~~~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          508 SVPDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             CCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCHHHhhcccCCcEEEecCC
Confidence            765543    66777777654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=4.2e-16  Score=108.69  Aligned_cols=135  Identities=19%  Similarity=0.203  Sum_probs=112.6

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeecccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQMV   72 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~n   72 (157)
                      +.++.++++++ .+|..+.  ++|++|  .+|.+.+..|..+..+++|++|++++|.+.+.       +++|+.|++++|
T Consensus        22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            46788888888 6776554  789999  88999988889999999999999999998632       238899999999


Q ss_pred             cccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CCc
Q 039394           73 QKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKL  148 (157)
Q Consensus        73 ~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l  148 (157)
                      .+.+                ..+..+..+++|++|++++|++. .+|..+..+++|+.|++++|.+.+..+..    +++
T Consensus        99 ~l~~----------------l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  161 (229)
T 3e6j_A           99 QLTV----------------LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL  161 (229)
T ss_dssp             CCCC----------------CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCc----------------cChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC
Confidence            9983                23445788999999999999988 88999999999999999999998665543    778


Q ss_pred             ccccCCCC
Q 039394          149 QTLDASSY  156 (157)
Q Consensus       149 ~~l~~~~~  156 (157)
                      +.++++.+
T Consensus       162 ~~L~l~~N  169 (229)
T 3e6j_A          162 THAYLFGN  169 (229)
T ss_dssp             CEEECTTS
T ss_pred             CEEEeeCC
Confidence            88887764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.69  E-value=2e-16  Score=124.02  Aligned_cols=61  Identities=26%  Similarity=0.199  Sum_probs=43.1

Q ss_pred             cccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC---CCcccccCCCC
Q 039394           96 TKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG---TKLQTLDASSY  156 (157)
Q Consensus        96 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~---~~l~~l~~~~~  156 (157)
                      ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..+..   +.++.|+++.+
T Consensus       248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N  311 (597)
T 3oja_B          248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN  311 (597)
T ss_dssp             GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS
T ss_pred             hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC
Confidence            44667777888888888877777777777888888888888776642222   56667776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=2.1e-17  Score=134.20  Aligned_cols=41  Identities=20%  Similarity=0.229  Sum_probs=19.4

Q ss_pred             ccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394           97 KIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        97 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                      .+..+++|+.|++++|++. .+| .++.+++|+.|++++|.+.
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~  608 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE  608 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS
T ss_pred             hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc
Confidence            4444444444444444444 444 4444444444444444444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.68  E-value=1.8e-16  Score=103.38  Aligned_cols=119  Identities=18%  Similarity=0.200  Sum_probs=71.5

Q ss_pred             CcEEECcCCccc-cccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccce
Q 039394            1 MEYLDLSDNQLS-EEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNS   77 (157)
Q Consensus         1 L~~L~L~~n~l~-~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~   77 (157)
                      |+.|++++|.++ +.+|..+..+++|++|  .+|.+.+.  ..+..+++|++|++++|.+++                  
T Consensus        19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~------------------   78 (149)
T 2je0_A           19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG------------------   78 (149)
T ss_dssp             CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS------------------
T ss_pred             CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc------------------
Confidence            456777777776 5666666667777777  56665543  556667777777777776654                  


Q ss_pred             EEEceeeeeccccccccccccccccCCCEEecCCCccCCC-CChhhhcCCCCCeEEccCCcceecCC---CC----CCcc
Q 039394           78 IAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK-IPEGISQLGLLGVLSLSNNKLSGKIP---SG----TKLQ  149 (157)
Q Consensus        78 ~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p---~~----~~l~  149 (157)
                                     .+|..+..+++|++|++++|++.+. .+..+..+++|++|++++|++++..+   ..    ++++
T Consensus        79 ---------------~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A           79 ---------------GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT  143 (149)
T ss_dssp             ---------------CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred             ---------------hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence                           2444555566666666666665532 23556666666666666666654433   11    5555


Q ss_pred             cccCC
Q 039394          150 TLDAS  154 (157)
Q Consensus       150 ~l~~~  154 (157)
                      .||++
T Consensus       144 ~L~l~  148 (149)
T 2je0_A          144 YLDGY  148 (149)
T ss_dssp             EETTB
T ss_pred             cccCC
Confidence            55553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=1.7e-16  Score=117.45  Aligned_cols=125  Identities=26%  Similarity=0.184  Sum_probs=93.4

Q ss_pred             CcEEECcCCccccccCcchh-cccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeecc
Q 039394            1 MEYLDLSDNQLSEEIPHCSR-YWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQ   70 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~-~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~   70 (157)
                      ++.|+|++|.+++..+..+. .+++|++|  ..|.+.+..+..|..+++|++|++++|++++..       ++|+.|+++
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            46788888888866666665 77888888  777777766677888888888888888876432       277788888


Q ss_pred             cccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhh---hcCCCCCeEEccCCcceec
Q 039394           71 MVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGI---SQLGLLGVLSLSNNKLSGK  141 (157)
Q Consensus        71 ~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~---~~l~~L~~L~ls~N~l~~~  141 (157)
                      +|.+..                ..|..+..+++|++|++++|++.+..+..+   ..+++|+.|++++|.+.+.
T Consensus       121 ~N~i~~----------------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A          121 NNHIVV----------------VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             SSCCCE----------------ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             CCcccE----------------ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            888763                356778888999999999999885444444   5688999999999988753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=3e-16  Score=106.97  Aligned_cols=135  Identities=21%  Similarity=0.282  Sum_probs=103.9

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~   71 (157)
                      |++|++++|.++ .+| .+..+++|++|  .+|.+.  .++.+..+++|++|++++|.+++.       +++++.|++++
T Consensus        46 L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           46 LTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             CCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred             ccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence            578899999998 566 68888999999  566443  345788899999999999988752       23888999999


Q ss_pred             ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--CCcc
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--TKLQ  149 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--~~l~  149 (157)
                      |.+.+                ..|..+..+++|++|++++|.+.+.+| .+..+++|+.|++++|.+.+..+-.  ++++
T Consensus       122 n~i~~----------------~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~  184 (197)
T 4ezg_A          122 SAHDD----------------SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLN  184 (197)
T ss_dssp             SBCBG----------------GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCC
T ss_pred             CccCc----------------HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCC
Confidence            98873                357778888899999999998444666 6788889999999999887632211  7788


Q ss_pred             cccCCCC
Q 039394          150 TLDASSY  156 (157)
Q Consensus       150 ~l~~~~~  156 (157)
                      .|+++.+
T Consensus       185 ~L~l~~N  191 (197)
T 4ezg_A          185 QLYAFSQ  191 (197)
T ss_dssp             EEEECBC
T ss_pred             EEEeeCc
Confidence            8887764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.68  E-value=1.1e-16  Score=112.02  Aligned_cols=155  Identities=14%  Similarity=0.062  Sum_probs=112.9

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--cccc-ceeecCccCcCCCCCCEEEccC-Ccceee-------cceeeeeec
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNH-INGCVPIRLCYVRPVQVLDISY-SSILGD-------IIIVSMIDL   69 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~-~~~~~p~~~~~l~~L~~L~l~~-n~~~~~-------~~~l~~l~l   69 (157)
                      |++|++++|++++..+..+..+++|++|  ..|. +.+..+..+..+++|++|++++ |.+++.       +++++.|++
T Consensus        33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l  112 (239)
T 2xwt_C           33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI  112 (239)
T ss_dssp             CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE
T ss_pred             ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC
Confidence            5789999999997666788899999999  7775 7766666889999999999998 888643       338899999


Q ss_pred             ccccccceEEEceeeeec---cc-------cccccccccccccCCC-EEecCCCccCCCCChhhhcCCCCCeEEccCCc-
Q 039394           70 QMVQKKNSIAIINVVVVG---EL-------FKRPIPTKIDQLTMLH-ALDLSRNQPIGKIPEGISQLGLLGVLSLSNNK-  137 (157)
Q Consensus        70 ~~n~l~~~~~~~~~~~l~---~~-------~~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~-  137 (157)
                      ++|.+.+.+.+..+..++   .+       +....+..+..+++|+ .+++++|++. .+|......++|+.|++++|+ 
T Consensus       113 ~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~  191 (239)
T 2xwt_C          113 FNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKY  191 (239)
T ss_dssp             EEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTT
T ss_pred             CCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCC
Confidence            999988755444444443   22       3333344577888888 8888888877 555543334788888888884 


Q ss_pred             ceecCCCC-----CCcccccCCCC
Q 039394          138 LSGKIPSG-----TKLQTLDASSY  156 (157)
Q Consensus       138 l~~~~p~~-----~~l~~l~~~~~  156 (157)
                      +.+..+..     +.++.+|++.+
T Consensus       192 l~~i~~~~~~~l~~~L~~L~l~~N  215 (239)
T 2xwt_C          192 LTVIDKDAFGGVYSGPSLLDVSQT  215 (239)
T ss_dssp             CCEECTTTTTTCSBCCSEEECTTC
T ss_pred             cccCCHHHhhccccCCcEEECCCC
Confidence            77554443     46777777654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.68  E-value=2.5e-16  Score=117.46  Aligned_cols=60  Identities=27%  Similarity=0.199  Sum_probs=41.1

Q ss_pred             ccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC---CCcccccCCCC
Q 039394           97 KIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG---TKLQTLDASSY  156 (157)
Q Consensus        97 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~---~~l~~l~~~~~  156 (157)
                      .+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..   +.++.|+++.+
T Consensus       243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n  305 (390)
T 3o6n_A          243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN  305 (390)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS
T ss_pred             HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC
Confidence            4566677777777777777766777777777777777777776532222   56666666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.67  E-value=6.1e-17  Score=113.36  Aligned_cols=154  Identities=14%  Similarity=0.090  Sum_probs=120.0

Q ss_pred             CcEEECcCCc-cccccCcchhcccccccc--cc-ccceeecCccCcCCCCCCEEEccCCcceeecc------eee---ee
Q 039394            1 MEYLDLSDNQ-LSEEIPHCSRYWQSLKVL--KS-NHINGCVPIRLCYVRPVQVLDISYSSILGDII------IVS---MI   67 (157)
Q Consensus         1 L~~L~L~~n~-l~~~~p~~~~~l~~L~~L--~~-n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------~l~---~l   67 (157)
                      |++|++++|. ++...+..|..+++|++|  .+ |.+.+..+..+..+++|++|++++|.+++ +|      +++   .+
T Consensus        57 L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L  135 (239)
T 2xwt_C           57 ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFIL  135 (239)
T ss_dssp             CCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEEE
T ss_pred             CcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccccccccccccccEE
Confidence            6789999997 886666688999999999  65 88887777788999999999999998874 33      555   99


Q ss_pred             ecccc-cccceE--EEceeeeec-cc------cccccccccccccCCCEEecCCCc-cCCCCChhhhcC-CCCCeEEccC
Q 039394           68 DLQMV-QKKNSI--AIINVVVVG-EL------FKRPIPTKIDQLTMLHALDLSRNQ-PIGKIPEGISQL-GLLGVLSLSN  135 (157)
Q Consensus        68 ~l~~n-~l~~~~--~~~~~~~l~-~~------~~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l-~~L~~L~ls~  135 (157)
                      ++++| .+....  .+..+..++ ++      +. .+|......++|+.+++++|+ +.+..+..+..+ ++|+.|++++
T Consensus       136 ~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             EEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred             ECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence            99999 887766  356666665 54      33 455544344789999999995 886667788999 9999999999


Q ss_pred             CcceecCCCC-CCcccccCCCC
Q 039394          136 NKLSGKIPSG-TKLQTLDASSY  156 (157)
Q Consensus       136 N~l~~~~p~~-~~l~~l~~~~~  156 (157)
                      |++++..+.. ..++.|++++.
T Consensus       215 N~l~~l~~~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          215 TSVTALPSKGLEHLKELIARNT  236 (239)
T ss_dssp             CCCCCCCCTTCTTCSEEECTTC
T ss_pred             CccccCChhHhccCceeeccCc
Confidence            9998543333 78888887653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.67  E-value=3.3e-16  Score=120.61  Aligned_cols=135  Identities=24%  Similarity=0.290  Sum_probs=74.4

Q ss_pred             cEEECcCCccccccCcchhcccccccc--cccccee--ecCccCcCCCCCCEEEccCCcceeecc--------eeeeeec
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHING--CVPIRLCYVRPVQVLDISYSSILGDII--------IVSMIDL   69 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~--------~l~~l~l   69 (157)
                      ++|++++|.+++.+|..+..+++|++|  ..|.+.+  .+|..+..+++|++|++++|.+.+.+|        +++.|++
T Consensus       327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L  406 (520)
T 2z7x_B          327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM  406 (520)
T ss_dssp             CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred             cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence            344444444444444444444444444  3444443  233344444444444444444443111        3444444


Q ss_pred             ccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----
Q 039394           70 QMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----  145 (157)
Q Consensus        70 ~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----  145 (157)
                      ++|.+.                +..|..+.  ++|+.|++++|++. .+|..+..+++|++|++++|.++. +|..    
T Consensus       407 s~N~l~----------------~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~  466 (520)
T 2z7x_B          407 SSNILT----------------DTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDR  466 (520)
T ss_dssp             CSSCCC----------------GGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTT
T ss_pred             cCCCCC----------------cchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhcc
Confidence            444443                34444433  67888888888877 777777788888888888888774 4432    


Q ss_pred             -CCcccccCCCC
Q 039394          146 -TKLQTLDASSY  156 (157)
Q Consensus       146 -~~l~~l~~~~~  156 (157)
                       +.++.++++.+
T Consensus       467 l~~L~~L~l~~N  478 (520)
T 2z7x_B          467 LTSLQKIWLHTN  478 (520)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CCcccEEECcCC
Confidence             56777777654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.67  E-value=3.5e-17  Score=118.90  Aligned_cols=154  Identities=21%  Similarity=0.203  Sum_probs=87.2

Q ss_pred             CcEEECcCCccccccCcch--hcccccccc--ccccceeecCccCcCC-----CCCCEEEccCCcceeec-------cee
Q 039394            1 MEYLDLSDNQLSEEIPHCS--RYWQSLKVL--KSNHINGCVPIRLCYV-----RPVQVLDISYSSILGDI-------IIV   64 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~--~~l~~L~~L--~~n~~~~~~p~~~~~l-----~~L~~L~l~~n~~~~~~-------~~l   64 (157)
                      |++|++++|.+++.+|..+  ..+++|++|  .+|.+.+. |..+..+     ++|++|++++|.+.+..       +++
T Consensus        97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L  175 (312)
T 1wwl_A           97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL  175 (312)
T ss_dssp             CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred             ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence            4566777777766666654  666677777  56666654 5555554     66777777777665433       266


Q ss_pred             eeeecccccccceE----EE--ceeeeeccc------ccc--ccc-cccccccCCCEEecCCCccCCCCC-hhhhcCCCC
Q 039394           65 SMIDLQMVQKKNSI----AI--INVVVVGEL------FKR--PIP-TKIDQLTMLHALDLSRNQPIGKIP-EGISQLGLL  128 (157)
Q Consensus        65 ~~l~l~~n~l~~~~----~~--~~~~~l~~~------~~~--~~p-~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L  128 (157)
                      +.|++++|++.+..    .+  ..+..++++      +.+  .++ ..+..+++|++|++++|++.+..| ..+..+++|
T Consensus       176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  255 (312)
T 1wwl_A          176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL  255 (312)
T ss_dssp             CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred             CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence            67777777654321    11  333344433      220  111 122345666666666666665553 334455666


Q ss_pred             CeEEccCCcceecCCCC--CCcccccCCCC
Q 039394          129 GVLSLSNNKLSGKIPSG--TKLQTLDASSY  156 (157)
Q Consensus       129 ~~L~ls~N~l~~~~p~~--~~l~~l~~~~~  156 (157)
                      ++|++++|.++ .+|..  +.++.||++.+
T Consensus       256 ~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N  284 (312)
T 1wwl_A          256 NSLNLSFTGLK-QVPKGLPAKLSVLDLSYN  284 (312)
T ss_dssp             CEEECTTSCCS-SCCSSCCSEEEEEECCSS
T ss_pred             CEEECCCCccC-hhhhhccCCceEEECCCC
Confidence            77777777666 44544  45666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=5e-16  Score=105.54  Aligned_cols=123  Identities=19%  Similarity=0.169  Sum_probs=100.6

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCc-cCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPI-RLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM   71 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~   71 (157)
                      +++++++++++ .+|..+..  ++++|  .+|.+.+..+. .+..+++|++|++++|.+++..|       +++.|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            57899999997 77765543  78888  78888765554 48899999999999999886543       788899999


Q ss_pred             ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP  143 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  143 (157)
                      |.+.+                ..|..+..+++|++|++++|++.+..|..+..+++|++|++++|++.+..+
T Consensus        88 N~l~~----------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKE----------------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCE----------------ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCc----------------cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99874                345568889999999999999998889999999999999999999876543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=3.3e-16  Score=106.45  Aligned_cols=103  Identities=21%  Similarity=0.165  Sum_probs=89.7

Q ss_pred             CcEEECcCCccccccCc-chhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeecc
Q 039394            1 MEYLDLSDNQLSEEIPH-CSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQ   70 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~-~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~   70 (157)
                      |++|++++|.+++..+. .+..+++|++|  .+|.+.+..|..+..+++|++|++++|.+++..+       +++.|+++
T Consensus        31 l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  110 (192)
T 1w8a_A           31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY  110 (192)
T ss_dssp             CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECC
T ss_pred             CCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence            57899999999966554 48999999999  8999998889999999999999999999985443       88999999


Q ss_pred             cccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCC
Q 039394           71 MVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP  119 (157)
Q Consensus        71 ~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  119 (157)
                      +|.+.+                ..|..+..+++|+++++++|.+.+..+
T Consensus       111 ~N~l~~----------------~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          111 DNQISC----------------VMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SSCCCE----------------ECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCcCCe----------------eCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            999984                468889999999999999999987654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.67  E-value=5.2e-16  Score=113.33  Aligned_cols=141  Identities=15%  Similarity=0.181  Sum_probs=83.4

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccce--eecCccCcCCCCCCEEEccCCcceee----cceeeeeecccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHIN--GCVPIRLCYVRPVQVLDISYSSILGD----IIIVSMIDLQMV   72 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~--~~~p~~~~~l~~L~~L~l~~n~~~~~----~~~l~~l~l~~n   72 (157)
                      |++|++++|.+++..+..+..+++|++|  ..|.+.  +..+..+..+++|++|++++|.++..    .++++.|++++|
T Consensus       123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n  202 (330)
T 1xku_A          123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN  202 (330)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTS
T ss_pred             ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCC
Confidence            3455555555554444445566666666  445443  24455566666666666666665521    126667777777


Q ss_pred             cccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecC
Q 039394           73 QKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKI  142 (157)
Q Consensus        73 ~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~  142 (157)
                      .+.+..  .+..+..++.+      +.+..+..+..+++|++|++++|++. .+|..+..+++|+.|++++|.+++..
T Consensus       203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~  279 (330)
T 1xku_A          203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG  279 (330)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccC
Confidence            766543  33344444433      44444556667777777777777766 66777777777777777777776543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.66  E-value=5.1e-16  Score=122.98  Aligned_cols=62  Identities=21%  Similarity=0.123  Sum_probs=46.3

Q ss_pred             ccccccccccC--CCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CCcccccCC
Q 039394           93 PIPTKIDQLTM--LHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDAS  154 (157)
Q Consensus        93 ~~p~~~~~l~~--L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~  154 (157)
                      ..|..+..++.  |+.|++++|++.+..|..+..+++|+.|++++|.+.+..|..    +.++.++++
T Consensus       237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  304 (680)
T 1ziw_A          237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK  304 (680)
T ss_dssp             ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred             cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence            34555666654  888888888888777788888888888999888888776654    566666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.66  E-value=6.3e-16  Score=115.25  Aligned_cols=123  Identities=15%  Similarity=0.196  Sum_probs=84.2

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~   71 (157)
                      +++++++++.++...+..+..+++|++|  ..|.+.+..+..+..+++|++|++++|.+.+..|       +++.|++++
T Consensus        47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  126 (390)
T 3o6n_A           47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER  126 (390)
T ss_dssp             CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence            4678888888884444456888889988  7788887777788889999999999988875432       788889999


Q ss_pred             ccccceEEEceeeeeccccccccccc-cccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPTK-IDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                      |.+..                 +|.. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus       127 n~l~~-----------------l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          127 NDLSS-----------------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             SCCCC-----------------CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             CccCc-----------------CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            88874                 3333 3455555555555555554445555555555555555555543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.66  E-value=1.8e-16  Score=125.56  Aligned_cols=125  Identities=22%  Similarity=0.140  Sum_probs=78.5

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~   71 (157)
                      +++|++++|.+++..+..+..+++|++|  ..|.+.+..|..+..+++|++|++++|.+++.       +++++.|++++
T Consensus        27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~  106 (680)
T 1ziw_A           27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS  106 (680)
T ss_dssp             CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC
Confidence            4677777777776666667777777777  66777766677777777777777777776532       22677777777


Q ss_pred             ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK  141 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  141 (157)
                      |.+.+.                .|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus       107 n~l~~~----------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A          107 NSIQKI----------------KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             SCCCCC----------------CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             CccCcc----------------ChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence            777643                233445555555555555555544444555555555555555555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.66  E-value=6.1e-16  Score=121.29  Aligned_cols=123  Identities=15%  Similarity=0.196  Sum_probs=87.8

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~   71 (157)
                      ++.+++++|.+....+..+..+++|++|  .+|.+.+..|..+..+++|++|++++|.+.+..       ++|+.|++++
T Consensus        53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  132 (597)
T 3oja_B           53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER  132 (597)
T ss_dssp             CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence            4678888888885555567888888888  778888777778888999999999988886543       3788888888


Q ss_pred             ccccceEEEceeeeeccccccccccc-cccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPTK-IDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                      |.+..                 +|.. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++
T Consensus       133 n~l~~-----------------l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          133 NDLSS-----------------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             SCCCC-----------------CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             CCCCC-----------------CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            88874                 3333 3556666666666666665555566666666666666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.66  E-value=5.6e-16  Score=125.78  Aligned_cols=156  Identities=20%  Similarity=0.195  Sum_probs=115.5

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeec-CccCcCCCCCCEEEccCCcceeecc-------eeeeeecc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCV-PIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQ   70 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~-p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~   70 (157)
                      +++|+|++|.+++..|..+..+++|++|  ..|...+.+ |..+..+++|++|++++|.+.+..|       +|+.|+++
T Consensus        26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  105 (844)
T 3j0a_A           26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY  105 (844)
T ss_dssp             CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred             cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence            5789999999998888899999999999  666455444 7789999999999999999876544       88899999


Q ss_pred             cccccceE----EEceeeeeccc------ccccc-ccccccccCCCEEecCCCccCCCCChhhhcC--CCCCeEEccCCc
Q 039394           71 MVQKKNSI----AIINVVVVGEL------FKRPI-PTKIDQLTMLHALDLSRNQPIGKIPEGISQL--GLLGVLSLSNNK  137 (157)
Q Consensus        71 ~n~l~~~~----~~~~~~~l~~~------~~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l--~~L~~L~ls~N~  137 (157)
                      +|.+.+..    .+..+..++++      +.+.. +..++.+++|++|++++|.+.+..+..+..+  ++|+.|+++.|.
T Consensus       106 ~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~  185 (844)
T 3j0a_A          106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS  185 (844)
T ss_dssp             TCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred             CCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence            99987632    25555555555      33332 3467777888888888888777777777766  777888888887


Q ss_pred             ceecCCCC----------CCcccccCCCC
Q 039394          138 LSGKIPSG----------TKLQTLDASSY  156 (157)
Q Consensus       138 l~~~~p~~----------~~l~~l~~~~~  156 (157)
                      +.+..|..          ..++.|+++.+
T Consensus       186 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  214 (844)
T 3j0a_A          186 LYSRVSVDWGKCMNPFRNMVLEILDVSGN  214 (844)
T ss_dssp             SCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred             cccccccchhhcCCccccCceeEEecCCC
Confidence            77766543          12677777654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.65  E-value=5.9e-16  Score=113.17  Aligned_cols=139  Identities=21%  Similarity=0.247  Sum_probs=79.1

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee--e----------------
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG--D----------------   60 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~--~----------------   60 (157)
                      |++|++++|.++ .+|..+.  ++|++|  ..|.+.+..+..+..+++|++|++++|.++.  .                
T Consensus       104 L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~  180 (332)
T 2ft3_A          104 LQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS  180 (332)
T ss_dssp             CCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCC
T ss_pred             CCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECc
Confidence            455666666665 4443332  455555  4555554444445555555555555555431  1                


Q ss_pred             ------c-----ceeeeeecccccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChh
Q 039394           61 ------I-----IIVSMIDLQMVQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEG  121 (157)
Q Consensus        61 ------~-----~~l~~l~l~~n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~  121 (157)
                            +     ++++.|++++|.+.+..  .+..+..++.+      +.+..+..+..+++|++|++++|++. .+|..
T Consensus       181 ~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~  259 (332)
T 2ft3_A          181 EAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG  259 (332)
T ss_dssp             SSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT
T ss_pred             CCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh
Confidence                  1     14555556666555443  34444444444      44444556677777777777777766 67777


Q ss_pred             hhcCCCCCeEEccCCcceecCC
Q 039394          122 ISQLGLLGVLSLSNNKLSGKIP  143 (157)
Q Consensus       122 ~~~l~~L~~L~ls~N~l~~~~p  143 (157)
                      +..+++|+.|++++|.+++..+
T Consensus       260 l~~l~~L~~L~l~~N~l~~~~~  281 (332)
T 2ft3_A          260 LPDLKLLQVVYLHTNNITKVGV  281 (332)
T ss_dssp             GGGCTTCCEEECCSSCCCBCCT
T ss_pred             hhcCccCCEEECCCCCCCccCh
Confidence            7777777777777777765433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.65  E-value=2.6e-15  Score=102.97  Aligned_cols=136  Identities=17%  Similarity=0.095  Sum_probs=109.9

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeecccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQMV   72 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~n   72 (157)
                      +.++.+.++++ .+|..+  .+++++|  ..|.+.+..+..+..+++|++|++++|.+++.       +++++.|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            35778888887 556544  3578888  78888876677788999999999999998743       238899999999


Q ss_pred             cccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CCc
Q 039394           73 QKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKL  148 (157)
Q Consensus        73 ~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l  148 (157)
                      .+.+                ..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+++..+..    +++
T Consensus        87 ~l~~----------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  150 (208)
T 2o6s_A           87 QLQS----------------LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL  150 (208)
T ss_dssp             CCCC----------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             cCCc----------------cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence            9973                23445788999999999999999777777899999999999999998765543    788


Q ss_pred             ccccCCCC
Q 039394          149 QTLDASSY  156 (157)
Q Consensus       149 ~~l~~~~~  156 (157)
                      +.++++.+
T Consensus       151 ~~L~l~~N  158 (208)
T 2o6s_A          151 QYIWLHDN  158 (208)
T ss_dssp             CEEECCSC
T ss_pred             cEEEecCC
Confidence            88888764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.65  E-value=9.1e-16  Score=119.38  Aligned_cols=136  Identities=20%  Similarity=0.346  Sum_probs=79.6

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--cccccee--ecCccCcCCCCCCEEEccCCcceeecc--------eeeeee
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHING--CVPIRLCYVRPVQVLDISYSSILGDII--------IVSMID   68 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~--------~l~~l~   68 (157)
                      |++|++++|.+++.+|..+..+++|++|  ..|.+.+  ..|..+..+++|++|++++|.+++.+|        +++.++
T Consensus       355 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~  434 (562)
T 3a79_B          355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN  434 (562)
T ss_dssp             CCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEE
T ss_pred             ceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEE
Confidence            3455666666655555555555666655  4555543  223445555666666666665554222        455555


Q ss_pred             cccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC---
Q 039394           69 LQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG---  145 (157)
Q Consensus        69 l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~---  145 (157)
                      +++|.+.+                ..|..+.  ++|+.|++++|++. .+|..+..+++|+.|++++|.+++ +|..   
T Consensus       435 l~~n~l~~----------------~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~  494 (562)
T 3a79_B          435 LSSNMLTG----------------SVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFD  494 (562)
T ss_dssp             CCSSCCCG----------------GGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTT
T ss_pred             CCCCCCCc----------------chhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHh
Confidence            55555542                3443332  57777777777766 666666677777778887777774 3432   


Q ss_pred             --CCcccccCCCC
Q 039394          146 --TKLQTLDASSY  156 (157)
Q Consensus       146 --~~l~~l~~~~~  156 (157)
                        +.++.++++.+
T Consensus       495 ~l~~L~~L~l~~N  507 (562)
T 3a79_B          495 RLTSLQYIWLHDN  507 (562)
T ss_dssp             TCTTCCCEECCSC
T ss_pred             cCCCCCEEEecCC
Confidence              56666666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.64  E-value=5.4e-16  Score=112.49  Aligned_cols=153  Identities=20%  Similarity=0.229  Sum_probs=112.2

Q ss_pred             CcEEECcCCccccccC----cchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----------ecce
Q 039394            1 MEYLDLSDNQLSEEIP----HCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----------DIII   63 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p----~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----------~~~~   63 (157)
                      |++|++++|.+++..+    ..+..+++|++|  ..|.+.+..+..+..+++|++|++++|++.+           .+++
T Consensus       119 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~  198 (310)
T 4glp_A          119 LSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPA  198 (310)
T ss_dssp             CSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCC
T ss_pred             CCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCC
Confidence            5788999999986544    334568889999  7888887778889999999999999998642           3458


Q ss_pred             eeeeecccccccceEE-----Eceeeeeccc------cccccccccccc---cCCCEEecCCCccCCCCChhhhcCCCCC
Q 039394           64 VSMIDLQMVQKKNSIA-----IINVVVVGEL------FKRPIPTKIDQL---TMLHALDLSRNQPIGKIPEGISQLGLLG  129 (157)
Q Consensus        64 l~~l~l~~n~l~~~~~-----~~~~~~l~~~------~~~~~p~~~~~l---~~L~~L~l~~N~l~~~~p~~~~~l~~L~  129 (157)
                      ++.|++++|.+.....     +..+..++++      +.+..|..+..+   ++|++|++++|++. .+|..+.  ++|+
T Consensus       199 L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~  275 (310)
T 4glp_A          199 IQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLR  275 (310)
T ss_dssp             CCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCS
T ss_pred             CCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCC
Confidence            8999999999875331     2333444444      555556666666   58888888888877 6677653  6888


Q ss_pred             eEEccCCccee-cCCCC-CCcccccCCCC
Q 039394          130 VLSLSNNKLSG-KIPSG-TKLQTLDASSY  156 (157)
Q Consensus       130 ~L~ls~N~l~~-~~p~~-~~l~~l~~~~~  156 (157)
                      .|++++|.+++ +.+.. ++++.|+++.+
T Consensus       276 ~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          276 VLDLSSNRLNRAPQPDELPEVDNLTLDGN  304 (310)
T ss_dssp             CEECCSCCCCSCCCTTSCCCCSCEECSST
T ss_pred             EEECCCCcCCCCchhhhCCCccEEECcCC
Confidence            88888888886 33333 77888887765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.64  E-value=2.2e-16  Score=116.34  Aligned_cols=37  Identities=30%  Similarity=0.353  Sum_probs=21.5

Q ss_pred             ChhhhcCCCCCeEEccCCcceecCCCC-----CCcccccCCCC
Q 039394          119 PEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASSY  156 (157)
Q Consensus       119 p~~~~~l~~L~~L~ls~N~l~~~~p~~-----~~l~~l~~~~~  156 (157)
                      |+.+..+++|+.|++++|.++ .+|..     +.++.++++.+
T Consensus       270 ~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          270 MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             HHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             HHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCC
Confidence            334556667777777777666 33432     55666666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=2e-15  Score=117.84  Aligned_cols=114  Identities=19%  Similarity=0.222  Sum_probs=91.4

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceE
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSI   78 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~   78 (157)
                      |++|++++|.+++ +|. +..+++|+.|  ..|.+. .+|..++.+++|++|++++|.++                    
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--------------------  499 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--------------------  499 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC--------------------
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC--------------------
Confidence            4677888888874 565 7777788877  667776 66777778888888888777776                    


Q ss_pred             EEceeeeeccccccccccccccccCCCEEecCCCccCCCC-ChhhhcCCCCCeEEccCCcceecCCCC-------CCccc
Q 039394           79 AIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI-PEGISQLGLLGVLSLSNNKLSGKIPSG-------TKLQT  150 (157)
Q Consensus        79 ~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p~~-------~~l~~  150 (157)
                                    .+| .++.+++|+.|++++|++.+.. |..++.+++|+.|++++|++++..|..       ++++.
T Consensus       500 --------------~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          500 --------------NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             --------------CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             --------------CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence                          366 7889999999999999999776 999999999999999999999876654       56666


Q ss_pred             cc
Q 039394          151 LD  152 (157)
Q Consensus       151 l~  152 (157)
                      ||
T Consensus       565 L~  566 (567)
T 1dce_A          565 IL  566 (567)
T ss_dssp             EE
T ss_pred             cC
Confidence            65

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.63  E-value=1.1e-15  Score=123.94  Aligned_cols=145  Identities=15%  Similarity=0.167  Sum_probs=119.7

Q ss_pred             CcEEECcCCcccccc-Ccchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec---------ceeeeee
Q 039394            1 MEYLDLSDNQLSEEI-PHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI---------IIVSMID   68 (157)
Q Consensus         1 L~~L~L~~n~l~~~~-p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~---------~~l~~l~   68 (157)
                      |++|++++|...+.+ |..+..+++|++|  ..|.+.+..|+.+..+++|++|++++|.+.+..         ++|+.|+
T Consensus        50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~  129 (844)
T 3j0a_A           50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD  129 (844)
T ss_dssp             CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred             CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence            678999999766666 7788999999999  788888888999999999999999999887533         3889999


Q ss_pred             cccccccceE---EEceeeeeccc------cccccccccccc--cCCCEEecCCCccCCCCChhhhcCCC------CCeE
Q 039394           69 LQMVQKKNSI---AIINVVVVGEL------FKRPIPTKIDQL--TMLHALDLSRNQPIGKIPEGISQLGL------LGVL  131 (157)
Q Consensus        69 l~~n~l~~~~---~~~~~~~l~~~------~~~~~p~~~~~l--~~L~~L~l~~N~l~~~~p~~~~~l~~------L~~L  131 (157)
                      +++|.+.+..   .+..+..++++      +.+..|..+..+  ++|+.|+++.|.+.+..|..++.+.+      |+.|
T Consensus       130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L  209 (844)
T 3j0a_A          130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL  209 (844)
T ss_dssp             EESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEE
T ss_pred             CCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEE
Confidence            9999998764   45666666666      555677777777  89999999999999988887777665      9999


Q ss_pred             EccCCcceecCCCC
Q 039394          132 SLSNNKLSGKIPSG  145 (157)
Q Consensus       132 ~ls~N~l~~~~p~~  145 (157)
                      ++++|.+++..|..
T Consensus       210 ~Ls~n~l~~~~~~~  223 (844)
T 3j0a_A          210 DVSGNGWTVDITGN  223 (844)
T ss_dssp             BCSSCCSSTTTTSG
T ss_pred             ecCCCcCchhHHHH
Confidence            99999988877654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.63  E-value=7.6e-16  Score=112.98  Aligned_cols=150  Identities=23%  Similarity=0.258  Sum_probs=98.4

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-----cceeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~   73 (157)
                      |++|++++|.+.+ ++. +..+++|+++  ..|.+.+..+  +..+++|++|++++|.+++.     +++++.|++++|.
T Consensus       179 L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~  254 (347)
T 4fmz_A          179 LYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ  254 (347)
T ss_dssp             CSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             CCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc
Confidence            3455555555552 222 4455555555  4444443222  55666777777777766532     2366777777777


Q ss_pred             ccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--
Q 039394           74 KKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--  145 (157)
Q Consensus        74 l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--  145 (157)
                      +.+...+..+..++++      +. .+ ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++++..|-.  
T Consensus       255 l~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l  332 (347)
T 4fmz_A          255 ISDINAVKDLTKLKMLNVGSNQIS-DI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASL  332 (347)
T ss_dssp             CCCCGGGTTCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGC
T ss_pred             cCCChhHhcCCCcCEEEccCCccC-CC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhh
Confidence            6654333333344433      22 23 35788899999999999998888888999999999999999998876633  


Q ss_pred             CCcccccCCCC
Q 039394          146 TKLQTLDASSY  156 (157)
Q Consensus       146 ~~l~~l~~~~~  156 (157)
                      ++++.+|++.+
T Consensus       333 ~~L~~L~l~~N  343 (347)
T 4fmz_A          333 SKMDSADFANQ  343 (347)
T ss_dssp             TTCSEESSSCC
T ss_pred             hccceeehhhh
Confidence            88889988875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=3.8e-15  Score=101.36  Aligned_cols=118  Identities=20%  Similarity=0.222  Sum_probs=96.0

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeecccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQMV   72 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~n   72 (157)
                      +++++++++++ .+|..+.  +++++|  .+|.+. .+|..+..+++|++|++++|.+++..       ++|+.|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            46889999988 6676553  578888  777777 67788999999999999999987533       37888999999


Q ss_pred             cccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394           73 QKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        73 ~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                      .+..                ..|..+..+++|++|++++|++....+..+..+++|+.|++++|++.
T Consensus        89 ~l~~----------------i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRC----------------IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCB----------------CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCE----------------eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            8873                34567888999999999999998666667889999999999999875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.62  E-value=1.5e-15  Score=110.29  Aligned_cols=41  Identities=27%  Similarity=0.335  Sum_probs=20.7

Q ss_pred             cccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394           98 IDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus        98 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                      +..+++|+.|++++|++.+ ++. +..+++|+.|++++|.+.+
T Consensus       169 l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          169 LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB
T ss_pred             hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCc
Confidence            4445555555555555442 222 4555555555555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.62  E-value=3.2e-15  Score=101.81  Aligned_cols=118  Identities=19%  Similarity=0.165  Sum_probs=98.4

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~   71 (157)
                      |++|++++|.++  .++.+..+++|++|  .+|.+.+..+..+..+++|++|++++|.+++.       +++++.|++++
T Consensus        68 L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~  145 (197)
T 4ezg_A           68 IKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY  145 (197)
T ss_dssp             CSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCS
T ss_pred             CCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccC
Confidence            678999999775  33478889999999  88888887888999999999999999999853       33899999999


Q ss_pred             cc-ccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394           72 VQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus        72 n~-l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                      |. +.                 .+| .+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|++.+
T Consensus       146 n~~i~-----------------~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          146 NGAIT-----------------DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CTBCC-----------------CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             CCCcc-----------------ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            98 65                 455 68899999999999999885 55 78899999999999999875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.62  E-value=1.7e-15  Score=116.30  Aligned_cols=134  Identities=16%  Similarity=0.098  Sum_probs=70.6

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec--------ceeeeeecc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI--------IIVSMIDLQ   70 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~--------~~l~~l~l~   70 (157)
                      |++|++++|.+++..+.   .+++|++|  .+|.+.+..|..+..+++|++|++++|.+++..        ++++.|+++
T Consensus       101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls  177 (487)
T 3oja_A          101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (487)
T ss_dssp             CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence            34555555555543332   23556666  566666555666666666666666666665422        256666666


Q ss_pred             cccccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394           71 MVQKKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        71 ~n~l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                      +|.+.+......+..+..+      +. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.+++++|++.
T Consensus       178 ~N~l~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          178 YNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             TSCCCEEECCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred             CCccccccccccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence            6666543211111111111      11 23444555666666666666655 35555555666666666666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.62  E-value=9.8e-16  Score=111.20  Aligned_cols=148  Identities=20%  Similarity=0.247  Sum_probs=81.6

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-----cceeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~   73 (157)
                      |++|++++|.++ .+| .+..+++|++|  .+|.+.+. +. +..+++|++|++++|.+++.     +++++.|++++|.
T Consensus        43 L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~  118 (308)
T 1h6u_A           43 ITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ  118 (308)
T ss_dssp             CCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSC
T ss_pred             cCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCC
Confidence            455666666665 333 45556666666  55555532 22 55666666666666655421     2255666666666


Q ss_pred             ccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--
Q 039394           74 KKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--  145 (157)
Q Consensus        74 l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--  145 (157)
                      +.+...+..+..++++      +. .++. +..+++|++|++++|++.+ ++. +..+++|+.|++++|.+.+..+-.  
T Consensus       119 l~~~~~l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l  194 (308)
T 1h6u_A          119 ITDVTPLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISPLASL  194 (308)
T ss_dssp             CCCCGGGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             CCCchhhcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChhhcCC
Confidence            5544333333333333      21 2222 5666777777777777663 333 667777777777777766543311  


Q ss_pred             CCcccccCCCC
Q 039394          146 TKLQTLDASSY  156 (157)
Q Consensus       146 ~~l~~l~~~~~  156 (157)
                      ++++.|+++.+
T Consensus       195 ~~L~~L~L~~N  205 (308)
T 1h6u_A          195 PNLIEVHLKNN  205 (308)
T ss_dssp             TTCCEEECTTS
T ss_pred             CCCCEEEccCC
Confidence            56666666544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=2.7e-15  Score=100.43  Aligned_cols=123  Identities=19%  Similarity=0.140  Sum_probs=97.4

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeecccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQMV   72 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~n   72 (157)
                      +.+++++++++ .+|..+  .+++++|  .+|.+.+..+..+..+++|++|++++|.+++.       +++++.|++++|
T Consensus        10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            46888899888 556444  3678888  77888866666788999999999999988743       237889999999


Q ss_pred             cccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394           73 QKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP  143 (157)
Q Consensus        73 ~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  143 (157)
                      .+.+                ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..|
T Consensus        87 ~l~~----------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQS----------------LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCC----------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             Cccc----------------cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            8873                234456889999999999999986666667889999999999999887544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.61  E-value=2.4e-15  Score=109.48  Aligned_cols=134  Identities=16%  Similarity=0.101  Sum_probs=74.6

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee--------cceeeeeecc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD--------IIIVSMIDLQ   70 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~--------~~~l~~l~l~   70 (157)
                      |++|++++|.+++..+.   .+++|++|  ..|.+.+..+..+..+++|++|++++|.+.+.        +++++.|+++
T Consensus       101 L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  177 (317)
T 3o53_A          101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (317)
T ss_dssp             CCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             cCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence            34555566655543332   24556666  66666655555666667777777777766532        2366667777


Q ss_pred             cccccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394           71 MVQKKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        71 ~n~l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                      +|.+.+......+..++++      +. .+|..+..+++|++|++++|++. .+|..+..+++|+.|++++|++.
T Consensus       178 ~N~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          178 YNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             TSCCCEEECCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             CCcCcccccccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            7766643211112222222      11 34444666666666666666655 45555666666666666666665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.61  E-value=5.4e-15  Score=105.11  Aligned_cols=116  Identities=17%  Similarity=0.230  Sum_probs=76.6

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec----ceeeeeecccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI----IIVSMIDLQMVQK   74 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~----~~l~~l~l~~n~l   74 (157)
                      |++|++++|.++ .++ .+..+++|++|  .+|.+.+.. + +..+++|++|++++|++++.-    ++++.|++++|.+
T Consensus        43 L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N~l  118 (263)
T 1xeu_A           43 VQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLS-P-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNEL  118 (263)
T ss_dssp             CSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSSCC
T ss_pred             CcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCCh-h-hccCCCCCEEECCCCccCCcCccccCcccEEEccCCcc
Confidence            578899999888 555 67888889988  777777543 3 888999999999999886421    3788889999988


Q ss_pred             cceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394           75 KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus        75 ~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                      .+..                  .+..+++|+.|++++|++.+ ++ .+..+++|+.|++++|.+.+
T Consensus       119 ~~~~------------------~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          119 RDTD------------------SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             SBSG------------------GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred             CCCh------------------hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence            7432                  24444445555555554442 22 34444455555555554443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.60  E-value=1.8e-15  Score=108.99  Aligned_cols=145  Identities=19%  Similarity=0.260  Sum_probs=78.9

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----ecceeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~   73 (157)
                      |++|++++|.+. .++ .+..+++|++|  ..|.+.+.. + +..+++|++|++++|.+++     .+++++.|++++|.
T Consensus        48 L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~  123 (291)
T 1h6t_A           48 IDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG  123 (291)
T ss_dssp             CCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSC
T ss_pred             ccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCc
Confidence            456666666665 333 35666666666  556555432 2 5666666666666666553     12256666666666


Q ss_pred             ccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--
Q 039394           74 KKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--  145 (157)
Q Consensus        74 l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--  145 (157)
                      +.+...+..+..++.+      +. .+ ..+..+++|++|++++|++.+..+  +..+++|+.|++++|.+++. |..  
T Consensus       124 i~~~~~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~l~~  198 (291)
T 1h6t_A          124 ISDINGLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAG  198 (291)
T ss_dssp             CCCCGGGGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTT
T ss_pred             CCCChhhcCCCCCCEEEccCCcCC-cc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hhhcc
Confidence            6543323333333333      11 12 345666666777777776664333  66666667777776666542 222  


Q ss_pred             -CCcccccCC
Q 039394          146 -TKLQTLDAS  154 (157)
Q Consensus       146 -~~l~~l~~~  154 (157)
                       ++++.|+++
T Consensus       199 l~~L~~L~l~  208 (291)
T 1h6t_A          199 LKNLDVLELF  208 (291)
T ss_dssp             CTTCSEEEEE
T ss_pred             CCCCCEEECc
Confidence             455555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.60  E-value=3.8e-15  Score=114.65  Aligned_cols=123  Identities=25%  Similarity=0.353  Sum_probs=107.4

Q ss_pred             CcEEECcCCcccc--ccCcchhcccccccc--ccccceeecCc-cCcCCCCCCEEEccCCcceeecc-----eeeeeecc
Q 039394            1 MEYLDLSDNQLSE--EIPHCSRYWQSLKVL--KSNHINGCVPI-RLCYVRPVQVLDISYSSILGDII-----IVSMIDLQ   70 (157)
Q Consensus         1 L~~L~L~~n~l~~--~~p~~~~~l~~L~~L--~~n~~~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~-----~l~~l~l~   70 (157)
                      |++|++++|.+++  .+|..+..+++|++|  ..|.+.+.+|. .+..+++|++|++++|.+++..|     +++.|+++
T Consensus       350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls  429 (520)
T 2z7x_B          350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH  429 (520)
T ss_dssp             CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECC
T ss_pred             CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECC
Confidence            6899999999996  567788999999999  88998875665 48889999999999999976543     89999999


Q ss_pred             cccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChh-hhcCCCCCeEEccCCcceec
Q 039394           71 MVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEG-ISQLGLLGVLSLSNNKLSGK  141 (157)
Q Consensus        71 ~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~L~ls~N~l~~~  141 (157)
                      +|.+.                 .+|..+..+++|++|++++|++. .+|.. +..+++|+.+++++|++.+.
T Consensus       430 ~N~l~-----------------~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          430 SNKIK-----------------SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             SSCCC-----------------CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCccc-----------------ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence            99998                 68888889999999999999998 56665 89999999999999998763

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.60  E-value=6.6e-16  Score=119.50  Aligned_cols=140  Identities=14%  Similarity=0.160  Sum_probs=109.5

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-e-------cceeeeeecc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-D-------IIIVSMIDLQ   70 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~-------~~~l~~l~l~   70 (157)
                      |++|++++|++++..|..+..+++|++|  .+|.+.+..|..++.+++|++|++++|.+++ .       +++++.|+++
T Consensus        52 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~  131 (549)
T 2z81_A           52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG  131 (549)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred             ccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECC
Confidence            6899999999998888899999999999  8888887777779999999999999998874 1       2388999999


Q ss_pred             cccc-cceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhh-hcCCCCCeEEccCCccee
Q 039394           71 MVQK-KNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus        71 ~n~l-~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~L~ls~N~l~~  140 (157)
                      +|.+ ....  .+..+..++++      +.+..|..+..+++|++|+++.|.+. .+|..+ ..+++|+.|++++|.+.+
T Consensus       132 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             CCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccc
Confidence            9984 3332  34444555444      56667888888888888888888865 455543 568889999999988876


Q ss_pred             c
Q 039394          141 K  141 (157)
Q Consensus       141 ~  141 (157)
                      .
T Consensus       211 ~  211 (549)
T 2z81_A          211 F  211 (549)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.59  E-value=4.3e-15  Score=109.97  Aligned_cols=122  Identities=24%  Similarity=0.192  Sum_probs=103.9

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~   71 (157)
                      |++|+|++|++++..+..|..+++|++|  ..|.+.+..+..|..+++|++|++++|.+.+..       ++|+.|++++
T Consensus        66 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  145 (361)
T 2xot_A           66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ  145 (361)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence            6899999999997777889999999999  889998877788999999999999999997543       3899999999


Q ss_pred             ccccceEEEceeeeecccccccccccc----ccccCCCEEecCCCccCCCCChhhhcCCC--CCeEEccCCcce
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPTKI----DQLTMLHALDLSRNQPIGKIPEGISQLGL--LGVLSLSNNKLS  139 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~~~----~~l~~L~~L~l~~N~l~~~~p~~~~~l~~--L~~L~ls~N~l~  139 (157)
                      |.+.                 .+|..+    ..+++|+.|++++|++.+..+..+..++.  ++.|++++|++.
T Consensus       146 N~l~-----------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          146 NQIS-----------------RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             SCCC-----------------SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CcCC-----------------eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            9998                 455554    56899999999999999666677888876  488999999875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=1.4e-14  Score=98.57  Aligned_cols=109  Identities=21%  Similarity=0.175  Sum_probs=88.5

Q ss_pred             ccccceeecCccCcCCCCCCEEEccCCcceee------cceeeeeecccccccceEEEceeeeecccccccccccccccc
Q 039394           29 KSNHINGCVPIRLCYVRPVQVLDISYSSILGD------IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLT  102 (157)
Q Consensus        29 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~------~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~  102 (157)
                      .++.+. .+|..+  .+++++|++++|.++..      +++++.|++++|.+.+                ..+..+..++
T Consensus        18 ~~~~l~-~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~----------------i~~~~f~~l~   78 (193)
T 2wfh_A           18 SNKGLK-VLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST----------------LSNQSFSNMT   78 (193)
T ss_dssp             TTSCCS-SCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC----------------CCTTTTTTCT
T ss_pred             CCCCCC-cCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE----------------eCHhHccCCC
Confidence            566666 566654  36899999999998721      2388999999999984                3456789999


Q ss_pred             CCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394          103 MLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY  156 (157)
Q Consensus       103 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~  156 (157)
                      +|++|++++|++.+..|..+..+++|+.|++++|.+++..+..    ++++.++++.+
T Consensus        79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence            9999999999999888889999999999999999998655543    77888888764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.58  E-value=1.1e-14  Score=113.75  Aligned_cols=116  Identities=18%  Similarity=0.168  Sum_probs=77.6

Q ss_pred             CcCCCCCCEEEccCCcceeecc-------eeeeeecccccccce-E--EEceeeeeccc------cccccccccccccCC
Q 039394           41 LCYVRPVQVLDISYSSILGDII-------IVSMIDLQMVQKKNS-I--AIINVVVVGEL------FKRPIPTKIDQLTML  104 (157)
Q Consensus        41 ~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~n~l~~~-~--~~~~~~~l~~~------~~~~~p~~~~~l~~L  104 (157)
                      +..+++++.++++.|.+.+..+       .++.+++++|.+... .  .+..+..++++      +.+..|..+..+++|
T Consensus       441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L  520 (635)
T 4g8a_A          441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  520 (635)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence            3444444555555544443222       445555555543221 1  23333333333      344578889999999


Q ss_pred             CEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC-----CCcccccCCCC
Q 039394          105 HALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASSY  156 (157)
Q Consensus       105 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-----~~l~~l~~~~~  156 (157)
                      ++|++++|++.+..|..+..+++|++|++++|.+++..|..     +.++.|+++.+
T Consensus       521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N  577 (635)
T 4g8a_A          521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN  577 (635)
T ss_dssp             CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred             CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence            99999999999888888999999999999999999888875     56888888764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.58  E-value=9.2e-15  Score=113.72  Aligned_cols=118  Identities=22%  Similarity=0.220  Sum_probs=55.4

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-----eeeeeecccccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-----IVSMIDLQMVQK   74 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-----~l~~l~l~~n~l   74 (157)
                      ++|++++|.+++..|..+..+++|++|  ..|.+.+..|+.+..+++|++|++++|.++ .+|     +++.|++++|.+
T Consensus        55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~l~~L~~L~Ls~N~l  133 (562)
T 3a79_B           55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPMASLRHLDLSFNDF  133 (562)
T ss_dssp             CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSCCCTTCSEEECCSSCC
T ss_pred             CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCccccccCCEEECCCCCc
Confidence            344444444443333444444444444  444444444444444444444444444443 121     444444444444


Q ss_pred             cceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCC--CeEEccCCcc
Q 039394           75 KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLL--GVLSLSNNKL  138 (157)
Q Consensus        75 ~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L--~~L~ls~N~l  138 (157)
                      .+.               ..|..++.+++|++|++++|++.+.   .+..++++  +.|++++|.+
T Consensus       134 ~~l---------------~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          134 DVL---------------PVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             SBC---------------CCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred             ccc---------------CchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence            321               2345566666666666666665532   23333444  6666666655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.57  E-value=1.5e-14  Score=113.59  Aligned_cols=132  Identities=20%  Similarity=0.255  Sum_probs=65.4

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----ecceeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~   73 (157)
                      |+.|+|++|.+.+..|  +..+++|+.|  ..|.+.+ + +.+..+++|++|++++|.+.+     .+++|+.|++++|.
T Consensus        67 L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~  142 (605)
T 1m9s_A           67 VTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK  142 (605)
T ss_dssp             CCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred             CCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCc
Confidence            4556666666653322  5556666666  4555543 2 245666666666666666543     12356666666666


Q ss_pred             ccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394           74 KKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus        74 l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                      +.+...+..+..++.+      +.+..|  +..+++|+.|++++|.+.+ + +.+..+++|+.|++++|++.+
T Consensus       143 l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          143 ITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CCCCGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEEC
T ss_pred             cCCchhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcC
Confidence            6543222222222222      222222  4445555555555555443 2 234455555555555555543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.56  E-value=2.4e-14  Score=95.44  Aligned_cols=104  Identities=23%  Similarity=0.204  Sum_probs=84.5

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceEE
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSIA   79 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~~   79 (157)
                      +.+++++|.++ .+|..+.  .++++|  ..|.+.+..|..+..+++|++|++++|++++                    
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------------   68 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV--------------------   68 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--------------------
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc--------------------
Confidence            57899999998 5776553  778888  8888888778889999999999999998873                    


Q ss_pred             EceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec
Q 039394           80 IINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK  141 (157)
Q Consensus        80 ~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  141 (157)
                                   ..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++...
T Consensus        69 -------------l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           69 -------------LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             -------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             -------------cChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence                         2344467888999999999998876666788899999999999987644

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.56  E-value=2.5e-15  Score=114.46  Aligned_cols=149  Identities=15%  Similarity=0.162  Sum_probs=73.4

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCC-------------CEEEccCCccee--ec-c
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPV-------------QVLDISYSSILG--DI-I   62 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L-------------~~L~l~~n~~~~--~~-~   62 (157)
                      |+++++++|.+ +.+|++++.+.+|++|  .+|.+.+..|..++.+++|             +++++++|.+++  .+ +
T Consensus        13 L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~   91 (454)
T 1jl5_A           13 LQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPP   91 (454)
T ss_dssp             ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCT
T ss_pred             chhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcC
Confidence            57889999999 6999999999999999  7888888999999888764             888888888765  22 2


Q ss_pred             eeeeeecccccccceEEEceeeeeccc-cccccccccccc-cCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394           63 IVSMIDLQMVQKKNSIAIINVVVVGEL-FKRPIPTKIDQL-TMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus        63 ~l~~l~l~~n~l~~~~~~~~~~~l~~~-~~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                      +++.+++++|.+.+.+..  ...++++ +.+.--..+... ++|++|++++|++.+ +| .++.+++|++|++++|.+.+
T Consensus        92 ~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~  167 (454)
T 1jl5_A           92 HLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK  167 (454)
T ss_dssp             TCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC
T ss_pred             CCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc
Confidence            777788887777764310  0111111 000000011111 355666666666553 44 35556666666666665554


Q ss_pred             cCCCC-CCcccccCCC
Q 039394          141 KIPSG-TKLQTLDASS  155 (157)
Q Consensus       141 ~~p~~-~~l~~l~~~~  155 (157)
                       +|.. ..++.|+++.
T Consensus       168 -lp~~~~~L~~L~L~~  182 (454)
T 1jl5_A          168 -LPDLPPSLEFIAAGN  182 (454)
T ss_dssp             -CCCCCTTCCEEECCS
T ss_pred             -cCCCcccccEEECcC
Confidence             3332 4455554443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=5.1e-14  Score=94.21  Aligned_cols=109  Identities=20%  Similarity=0.157  Sum_probs=85.9

Q ss_pred             ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeecccccccceEEEceeeeeccccccccccccccc
Q 039394           29 KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQL  101 (157)
Q Consensus        29 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l  101 (157)
                      ..+.+. .+|..+  .+++++|++++|.+++..       ++++.|++++|.+.+                ..+..+..+
T Consensus        15 ~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------~~~~~~~~l   75 (177)
T 2o6r_A           15 NSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS----------------LPDGVFDKL   75 (177)
T ss_dssp             CSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC----------------CCTTTTTTC
T ss_pred             cCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE----------------eChhHccCC
Confidence            455555 455443  478999999999987432       388999999999973                234457889


Q ss_pred             cCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394          102 TMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY  156 (157)
Q Consensus       102 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~  156 (157)
                      ++|++|++++|++.+..+..+..+++|+.|++++|.+++..+..    ++++.++++.+
T Consensus        76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            99999999999999777777899999999999999998655543    67888888765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=2.7e-14  Score=95.55  Aligned_cols=118  Identities=17%  Similarity=0.134  Sum_probs=83.5

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM   71 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~   71 (157)
                      |+.|++++|.++ .+|......++|++|  ..|.+.+.  +.+..+++|++|++++|.+++.       +++++.|++++
T Consensus        21 L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~   97 (176)
T 1a9n_A           21 DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   97 (176)
T ss_dssp             CEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             ceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence            567888888888 455433333488888  77777754  5678888888888888887642       23677777777


Q ss_pred             ccccceEEEceeeeecccccccccc--ccccccCCCEEecCCCccCCCCChh----hhcCCCCCeEEccCCcce
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPT--KIDQLTMLHALDLSRNQPIGKIPEG----ISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~--~~~~l~~L~~L~l~~N~l~~~~p~~----~~~l~~L~~L~ls~N~l~  139 (157)
                      |.+.                 .+|.  .+..+++|+.+++++|.+. .+|..    +..+++|+.||++.|.+.
T Consensus        98 N~i~-----------------~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           98 NSLV-----------------ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCCC-----------------CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CcCC-----------------cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            7776                 3454  6677777888888888776 45553    777778888887777653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.56  E-value=1.6e-14  Score=110.06  Aligned_cols=55  Identities=24%  Similarity=0.312  Sum_probs=28.9

Q ss_pred             cccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--CCcccccCC
Q 039394           98 IDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--TKLQTLDAS  154 (157)
Q Consensus        98 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--~~l~~l~~~  154 (157)
                      +..+++|+.|++++|++.+.  ..+..+++|+.|++++|.+++..|-.  +.++.++++
T Consensus       327 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~  383 (466)
T 1o6v_A          327 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN  383 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECC
T ss_pred             hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEecc
Confidence            44555555555555555432  34555566666666666655544422  445555444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=9.3e-15  Score=117.02  Aligned_cols=109  Identities=15%  Similarity=0.131  Sum_probs=66.2

Q ss_pred             Ccchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeecccccccceEEEceeeee
Q 039394           16 PHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQMVQKKNSIAIINVVVV   86 (157)
Q Consensus        16 p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~n~l~~~~~~~~~~~l   86 (157)
                      +..+..+..|+.|  .+|.+. .+|..+..+++|++|++++|.++ .+|       +|+.|++++|.+.           
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-----------  283 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-----------  283 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-----------
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-----------
Confidence            5556666666666  555555 45555566666667777666665 333       5666666666665           


Q ss_pred             ccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCC
Q 039394           87 GELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPS  144 (157)
Q Consensus        87 ~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~  144 (157)
                            .+|..++.+++|++|++++|.+. .+|..|+.+++|+.|++++|.+++.+|.
T Consensus       284 ------~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          284 ------SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             ------SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             ------ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence                  45666666667777777777655 5666666667777777777666655443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.54  E-value=1.7e-14  Score=109.89  Aligned_cols=146  Identities=23%  Similarity=0.313  Sum_probs=84.7

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-----cceeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~   73 (157)
                      |++|++++|.+++. ++ +..+++|++|  ..|.+.+..+  +..+++|++|++++|.+++.     +++++.|++++|.
T Consensus        70 L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~  145 (466)
T 1o6v_A           70 LTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT  145 (466)
T ss_dssp             CCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEE
T ss_pred             CCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCc
Confidence            56778888877744 33 7777778877  6666664433  77788888888888877643     2377788888887


Q ss_pred             ccceEEEceeeeeccc-----cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--C
Q 039394           74 KKNSIAIINVVVVGEL-----FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--T  146 (157)
Q Consensus        74 l~~~~~~~~~~~l~~~-----~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--~  146 (157)
                      +.+...+..+..++++     +. ..+ .+..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+.+..|..  +
T Consensus       146 l~~~~~~~~l~~L~~L~l~~~~~-~~~-~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~  221 (466)
T 1o6v_A          146 ISDISALSGLTSLQQLSFGNQVT-DLK-PLANLTTLERLDISSNKVSD-I-SVLAKLTNLESLIATNNQISDITPLGILT  221 (466)
T ss_dssp             ECCCGGGTTCTTCSEEEEEESCC-CCG-GGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGGCT
T ss_pred             cCCChhhccCCcccEeecCCccc-Cch-hhccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEecCCcccccccccccC
Confidence            7654333333333322     11 111 25556666666666666543 2 23555566666666666555443322  4


Q ss_pred             CcccccCC
Q 039394          147 KLQTLDAS  154 (157)
Q Consensus       147 ~l~~l~~~  154 (157)
                      .++.|+++
T Consensus       222 ~L~~L~l~  229 (466)
T 1o6v_A          222 NLDELSLN  229 (466)
T ss_dssp             TCCEEECC
T ss_pred             CCCEEECC
Confidence            44444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.54  E-value=5.2e-14  Score=94.21  Aligned_cols=102  Identities=24%  Similarity=0.247  Sum_probs=80.2

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceEE
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSIA   79 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~~   79 (157)
                      +.+++++|+++ .+|..+.  .+|++|  .+|.+.+..|..+..+++|++|++++|++++                    
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------------   71 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--------------------   71 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------------------
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--------------------
Confidence            46788888887 6776554  678888  7888887778888888999999988888763                    


Q ss_pred             Eceeeeecccccccccc-ccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394           80 IINVVVVGELFKRPIPT-KIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus        80 ~~~~~~l~~~~~~~~p~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                                    +|. .+..+++|++|++++|++.+..+..+..+++|+.|++++|++..
T Consensus        72 --------------i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           72 --------------IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             --------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             --------------cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence                          443 35778888999999998886555568888889999999888763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=1.3e-14  Score=94.41  Aligned_cols=100  Identities=22%  Similarity=0.202  Sum_probs=80.3

Q ss_pred             ccccccc--ccccce-eecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceEEEceeeeecccccccccccc
Q 039394           22 WQSLKVL--KSNHIN-GCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKI   98 (157)
Q Consensus        22 l~~L~~L--~~n~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~   98 (157)
                      .++++.|  .+|.+. +.+|..+..+++|++|++++|.+++                                  + ..+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------------------~-~~~   60 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS----------------------------------I-ANL   60 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC----------------------------------C-TTC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC----------------------------------c-hhh
Confidence            4667777  677776 5677777888888888888887763                                  3 567


Q ss_pred             ccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec-CCCC----CCcccccCCCC
Q 039394           99 DQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK-IPSG----TKLQTLDASSY  156 (157)
Q Consensus        99 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~----~~l~~l~~~~~  156 (157)
                      ..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++. .+..    ++++.|+++.+
T Consensus        61 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           61 PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             hcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence            8889999999999999987899888999999999999999873 2222    78888988765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.53  E-value=1.4e-15  Score=110.98  Aligned_cols=155  Identities=18%  Similarity=0.161  Sum_probs=98.4

Q ss_pred             CcEEECcCCccccc-cCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCC-ccee--------ecceeeeee
Q 039394            1 MEYLDLSDNQLSEE-IPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYS-SILG--------DIIIVSMID   68 (157)
Q Consensus         1 L~~L~L~~n~l~~~-~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n-~~~~--------~~~~l~~l~   68 (157)
                      |++|++++|.+++. ++..+..+++|++|  .+|.+.+..+..+..+++|++|++++| .+++        .+++++.|+
T Consensus        95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~  174 (336)
T 2ast_B           95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN  174 (336)
T ss_dssp             CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence            46677777777654 66666777777777  566666666666777777777777777 4543        233777777


Q ss_pred             cccc-cccce--E-EEceee-eeccc-cc--------cccccccccccCCCEEecCCCc-cCCCCChhhhcCCCCCeEEc
Q 039394           69 LQMV-QKKNS--I-AIINVV-VVGEL-FK--------RPIPTKIDQLTMLHALDLSRNQ-PIGKIPEGISQLGLLGVLSL  133 (157)
Q Consensus        69 l~~n-~l~~~--~-~~~~~~-~l~~~-~~--------~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l~~L~~L~l  133 (157)
                      +++| .+.+.  . .+..+. .++++ +.        ..+|..+..+++|++|++++|. +.+..+..+..+++|+.|++
T Consensus       175 l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l  254 (336)
T 2ast_B          175 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL  254 (336)
T ss_dssp             CCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             CCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence            7777 66642  1 234444 44444 11        2345556677788888888887 55566667777788888888


Q ss_pred             cCCc-ceec----CCCCCCcccccCCC
Q 039394          134 SNNK-LSGK----IPSGTKLQTLDASS  155 (157)
Q Consensus       134 s~N~-l~~~----~p~~~~l~~l~~~~  155 (157)
                      ++|. +...    +...++++.|+++.
T Consensus       255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~  281 (336)
T 2ast_B          255 SRCYDIIPETLLELGEIPTLKTLQVFG  281 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             CCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence            8774 3222    22226677777654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.53  E-value=2.3e-14  Score=103.24  Aligned_cols=132  Identities=20%  Similarity=0.254  Sum_probs=103.4

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----ecceeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~   73 (157)
                      |++|++++|.+++..+  +..+++|++|  ..|.+.+ ++ .+..+++|++|++++|.+++     .+++++.|++++|.
T Consensus        70 L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~  145 (291)
T 1h6t_A           70 VTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK  145 (291)
T ss_dssp             CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCc
Confidence            6789999999985443  8889999999  7777775 33 48889999999999998864     23488899999998


Q ss_pred             ccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394           74 KKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus        74 l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                      +.+...+..+..++++      +.+..|  +..+++|++|++++|.+.+ ++ .+..+++|+.|++++|++..
T Consensus       146 l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          146 ITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCcchhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            8876544455555555      333333  8889999999999999884 55 48999999999999999875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.52  E-value=5.5e-14  Score=110.49  Aligned_cols=147  Identities=20%  Similarity=0.262  Sum_probs=112.5

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-----cceeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~   73 (157)
                      |+.|++++|.+. .++ .+..+++|+.|  ..|.+.+..|  +..+++|+.|++++|.+.+.     +++|+.|++++|.
T Consensus        45 L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~  120 (605)
T 1m9s_A           45 IDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNG  120 (605)
T ss_dssp             CCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSC
T ss_pred             CCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCC
Confidence            567899999988 444 58889999999  7888886444  88999999999999998742     3489999999999


Q ss_pred             ccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--
Q 039394           74 KKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--  145 (157)
Q Consensus        74 l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--  145 (157)
                      +.+...+..+..++.+      +.+ + ..+..+++|+.|++++|.+.+..|  +..+++|+.|++++|.+++. |..  
T Consensus       121 l~~l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~  195 (605)
T 1m9s_A          121 ISDINGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAG  195 (605)
T ss_dssp             CCCCGGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTT
T ss_pred             CCCCccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHcc
Confidence            9876545555555555      332 2 467788899999999999886555  78889999999999988764 322  


Q ss_pred             -CCcccccCCCC
Q 039394          146 -TKLQTLDASSY  156 (157)
Q Consensus       146 -~~l~~l~~~~~  156 (157)
                       +.|+.|+++.+
T Consensus       196 l~~L~~L~L~~N  207 (605)
T 1m9s_A          196 LKNLDVLELFSQ  207 (605)
T ss_dssp             CTTCSEEECCSE
T ss_pred             CCCCCEEEccCC
Confidence             77777777653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.52  E-value=6.4e-17  Score=126.27  Aligned_cols=152  Identities=18%  Similarity=0.194  Sum_probs=101.2

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--cccc-------------ceeecCccCcCCCCCCEEE-ccCCccee-----
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNH-------------INGCVPIRLCYVRPVQVLD-ISYSSILG-----   59 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~-------------~~~~~p~~~~~l~~L~~L~-l~~n~~~~-----   59 (157)
                      |+.|+|++|.++ .+|+.++.+++|+.|  .+|.             ..+..|..++.+++|+.|+ ++.|.+..     
T Consensus       351 L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~  429 (567)
T 1dce_A          351 LFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  429 (567)
T ss_dssp             SSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             ceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhh
Confidence            356788888887 778888888888887  3332             2334445555555555554 33332110     


Q ss_pred             -------ecc--eeeeeecccccccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhc
Q 039394           60 -------DII--IVSMIDLQMVQKKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQ  124 (157)
Q Consensus        60 -------~~~--~l~~l~l~~n~l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~  124 (157)
                             .++  .++.|++++|.+.+.+.+..+..++.+      +. .+|..++.+++|+.|++++|++.+ +| .++.
T Consensus       430 l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~  506 (567)
T 1dce_A          430 LLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVAN  506 (567)
T ss_dssp             HHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTT
T ss_pred             hhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCC
Confidence                   011  344555555555544333333333333      22 689999999999999999999985 77 8899


Q ss_pred             CCCCCeEEccCCcceecC-CCC----CCcccccCCCC
Q 039394          125 LGLLGVLSLSNNKLSGKI-PSG----TKLQTLDASSY  156 (157)
Q Consensus       125 l~~L~~L~ls~N~l~~~~-p~~----~~l~~l~~~~~  156 (157)
                      +++|+.|++++|.+++.. |..    +.|+.|+++.+
T Consensus       507 l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence            999999999999999876 665    88888988765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.51  E-value=2.5e-14  Score=104.86  Aligned_cols=133  Identities=21%  Similarity=0.260  Sum_probs=97.0

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----ecceeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~   73 (157)
                      |+++++++|.+.+..+  +..+++|++|  .+|.+.+.. . +..+++|++|++++|.+++     .+++++.+++++|.
T Consensus       201 L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~  276 (347)
T 4fmz_A          201 LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQ  276 (347)
T ss_dssp             CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             cceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCc
Confidence            5678888888874433  6777888888  677766433 3 7778888888888887763     23377888888888


Q ss_pred             ccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394           74 KKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        74 l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                      +.+...+..+..++.+      +.+..|..+..+++|++|++++|.+.+..|  +..+++|+.+++++|+++
T Consensus       277 l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          277 ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            7765434444444444      555677888999999999999999886555  889999999999999875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.50  E-value=1.5e-13  Score=104.70  Aligned_cols=130  Identities=17%  Similarity=0.198  Sum_probs=71.4

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-------------------
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-------------------   59 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-------------------   59 (157)
                      |++|++++|.+++. +  +..+++|++|  ..|.+.+ +|  +..+++|++|++++|.+++                   
T Consensus        87 L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~  160 (457)
T 3bz5_A           87 LTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKK  160 (457)
T ss_dssp             CSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSC
T ss_pred             CCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCc
Confidence            45666666666642 2  5555666666  4555543 22  4555555555555555442                   


Q ss_pred             --e-----cceeeeeecccccccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCC
Q 039394           60 --D-----IIIVSMIDLQMVQKKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLG  126 (157)
Q Consensus        60 --~-----~~~l~~l~l~~n~l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~  126 (157)
                        .     +++++.|++++|.+.+.. +..+..++.+      +.+ +  .+..+++|++|++++|++.+ +|  +..++
T Consensus       161 ~~~~~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~  233 (457)
T 3bz5_A          161 ITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNKLTE-ID--VTPLT  233 (457)
T ss_dssp             CCCCCCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSCCSC-CC--CTTCT
T ss_pred             ccccccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCcccc-cC--ccccC
Confidence              1     124555555555555432 2222222222      221 1  25666777777777777775 55  66777


Q ss_pred             CCCeEEccCCcceecCC
Q 039394          127 LLGVLSLSNNKLSGKIP  143 (157)
Q Consensus       127 ~L~~L~ls~N~l~~~~p  143 (157)
                      +|+.|++++|.+++..+
T Consensus       234 ~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          234 QLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             TCSEEECCSSCCSCCCC
T ss_pred             CCCEEEeeCCcCCCcCH
Confidence            77777777777776543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.50  E-value=1.7e-13  Score=104.41  Aligned_cols=109  Identities=19%  Similarity=0.271  Sum_probs=61.0

Q ss_pred             cccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc----eeeeeecccccccceEEEceeeeeccc------c
Q 039394           23 QSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII----IVSMIDLQMVQKKNSIAIINVVVVGEL------F   90 (157)
Q Consensus        23 ~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~----~l~~l~l~~n~l~~~~~~~~~~~l~~~------~   90 (157)
                      ++|++|  .+|.+.+ +| .++.+++|++|++++|.+++ +|    +++.|++++|.+.+.+.+..+..++++      +
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l  207 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL  207 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcC
Confidence            456666  5666664 55 47778888888888887764 32    677777777777765444444444433      1


Q ss_pred             ccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394           91 KRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus        91 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                      . .+|..   ..+|++|++++|.+. .+|. ++.+++|+.|++++|.+.+
T Consensus       208 ~-~l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          208 K-KLPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             S-SCCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS
T ss_pred             C-cCCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc
Confidence            1 12211   124555555555544 4442 4555555555555555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.49  E-value=3.4e-13  Score=102.81  Aligned_cols=144  Identities=17%  Similarity=0.207  Sum_probs=106.4

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee----ecceeeeeecccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG----DIIIVSMIDLQMVQK   74 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~----~~~~l~~l~l~~n~l   74 (157)
                      |++|++++|.+++ +| .+..+++|++|  ..|.+.+. |  ++.+++|++|++++|.+++    .+++++.|++++|.+
T Consensus        44 L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l  118 (457)
T 3bz5_A           44 LTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKL  118 (457)
T ss_dssp             CCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCC
T ss_pred             CCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcC
Confidence            5789999999995 45 68889999999  78888763 3  7889999999999998874    234889999999998


Q ss_pred             cceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--C
Q 039394           75 KNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--T  146 (157)
Q Consensus        75 ~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--~  146 (157)
                      .+.. +..+..++++      +.+ +  .+..+++|++|++++|...+.+  .+..+++|+.|++++|.+++. |-.  +
T Consensus       119 ~~l~-~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~l~~l~  191 (457)
T 3bz5_A          119 TKLD-VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-DVSQNK  191 (457)
T ss_dssp             SCCC-CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-CCTTCT
T ss_pred             Ceec-CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-ccccCC
Confidence            8653 4444444444      332 2  2667778888888888666565  367788888888888888763 322  6


Q ss_pred             CcccccCCCC
Q 039394          147 KLQTLDASSY  156 (157)
Q Consensus       147 ~l~~l~~~~~  156 (157)
                      .++.|+++.+
T Consensus       192 ~L~~L~l~~N  201 (457)
T 3bz5_A          192 LLNRLNCDTN  201 (457)
T ss_dssp             TCCEEECCSS
T ss_pred             CCCEEECcCC
Confidence            7777777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.49  E-value=1.6e-13  Score=97.45  Aligned_cols=116  Identities=19%  Similarity=0.237  Sum_probs=97.5

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-----cceeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~   73 (157)
                      |++|++++|.+++. ++ +..+++|++|  ..|.+.+ +|.. .. ++|++|++++|.+++.     +++++.|++++|+
T Consensus        65 L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~  139 (263)
T 1xeu_A           65 LKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNK  139 (263)
T ss_dssp             CCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSC
T ss_pred             CCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCChhhcCcccccEEECCCCc
Confidence            68999999999954 44 8899999999  7888875 4443 33 9999999999998742     3489999999999


Q ss_pred             ccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec
Q 039394           74 KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK  141 (157)
Q Consensus        74 l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  141 (157)
                      +.                 .++ .+..+++|++|++++|++.+.  ..+..+++|+.|++++|++.+.
T Consensus       140 i~-----------------~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          140 LK-----------------SIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CC-----------------BCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CC-----------------CCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            98                 344 688899999999999999865  6788999999999999998765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.49  E-value=7.8e-16  Score=114.65  Aligned_cols=140  Identities=16%  Similarity=0.145  Sum_probs=66.3

Q ss_pred             CcEEECcCC---ccccccCcch-------hcccccccc--cccccee----ecCccCcCCCCCCEEEccCCcceee----
Q 039394            1 MEYLDLSDN---QLSEEIPHCS-------RYWQSLKVL--KSNHING----CVPIRLCYVRPVQVLDISYSSILGD----   60 (157)
Q Consensus         1 L~~L~L~~n---~l~~~~p~~~-------~~l~~L~~L--~~n~~~~----~~p~~~~~l~~L~~L~l~~n~~~~~----   60 (157)
                      |++|++++|   ++.+.+|..+       ..+++|++|  ..|.+.+    .+|..+..+++|++|++++|.+.+.    
T Consensus        62 L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~  141 (386)
T 2ca6_A           62 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK  141 (386)
T ss_dssp             CCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHH
T ss_pred             ccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHH
Confidence            455666664   2333344333       455566666  5555554    2444555566666666666655311    


Q ss_pred             ----c------------ceeeeeecccccccceE------EEceeeeeccc------ccc-----ccccccccccCCCEE
Q 039394           61 ----I------------IIVSMIDLQMVQKKNSI------AIINVVVVGEL------FKR-----PIPTKIDQLTMLHAL  107 (157)
Q Consensus        61 ----~------------~~l~~l~l~~n~l~~~~------~~~~~~~l~~~------~~~-----~~p~~~~~l~~L~~L  107 (157)
                          +            ++++.|++++|.+....      .+..+..++.+      +..     ..|..+..+++|++|
T Consensus       142 l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L  221 (386)
T 2ca6_A          142 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL  221 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEE
T ss_pred             HHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEE
Confidence                0            45555666666554211      12222222222      110     122244455555555


Q ss_pred             ecCCCccC----CCCChhhhcCCCCCeEEccCCccee
Q 039394          108 DLSRNQPI----GKIPEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus       108 ~l~~N~l~----~~~p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                      ++++|.+.    +.+|..+..+++|+.|++++|.+++
T Consensus       222 ~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             ECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence            55555553    3444555555555555555555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.48  E-value=2.2e-15  Score=112.26  Aligned_cols=47  Identities=17%  Similarity=0.160  Sum_probs=21.1

Q ss_pred             cccccccccCCCEEecCCCccCCC----CChhhhc--CCCCCeEEccCCccee
Q 039394           94 IPTKIDQLTMLHALDLSRNQPIGK----IPEGISQ--LGLLGVLSLSNNKLSG  140 (157)
Q Consensus        94 ~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~--l~~L~~L~ls~N~l~~  140 (157)
                      +|..+..+++|++|++++|.+.+.    ++..+..  +++|+.|++++|.+++
T Consensus       236 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            344444444555555555544432    2333322  4445555555554444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=3.9e-16  Score=106.44  Aligned_cols=122  Identities=20%  Similarity=0.204  Sum_probs=98.9

Q ss_pred             cEEECcCCccccccCc------chhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeee
Q 039394            2 EYLDLSDNQLSEEIPH------CSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSM   66 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~------~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~   66 (157)
                      +.++++.+.+.+.+|.      .+..+++|++|  .+|.+.+ +| .+..+++|++|++++|.++ .+|       +++.
T Consensus        21 ~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~   97 (198)
T 1ds9_A           21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEE   97 (198)
T ss_dssp             CCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSE
T ss_pred             cCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCE
Confidence            4456777777777665      88999999999  7788775 66 7888999999999999887 333       8899


Q ss_pred             eecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCC-hhhhcCCCCCeEEccCCcceecCCC
Q 039394           67 IDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP-EGISQLGLLGVLSLSNNKLSGKIPS  144 (157)
Q Consensus        67 l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~  144 (157)
                      |++++|.+.                 .+| .+..+++|++|++++|++.+..+ ..+..+++|++|++++|++.+..|.
T Consensus        98 L~L~~N~l~-----------------~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           98 LWISYNQIA-----------------SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             EEEEEEECC-----------------CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             EECcCCcCC-----------------cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            999999987                 345 57888999999999999874322 4788999999999999999877554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.48  E-value=1e-13  Score=91.93  Aligned_cols=120  Identities=17%  Similarity=0.112  Sum_probs=97.7

Q ss_pred             cccccccc--ccccce-eecCccCcCCCCCCEEEccCCcceee-----cceeeeeecccccccceEEEceeeeecccccc
Q 039394           21 YWQSLKVL--KSNHIN-GCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQKKNSIAIINVVVVGELFKR   92 (157)
Q Consensus        21 ~l~~L~~L--~~n~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~   92 (157)
                      ..++|++|  .+|.+. +.+|..+..+++|++|++++|.+++.     +++++.|++++|.+.+                
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~----------------   85 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG----------------   85 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCS----------------
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCch----------------
Confidence            34778888  778777 67888889999999999999988743     3488999999999973                


Q ss_pred             ccccccccccCCCEEecCCCccCCCC-ChhhhcCCCCCeEEccCCcceecCC-------CCCCcccccCCCC
Q 039394           93 PIPTKIDQLTMLHALDLSRNQPIGKI-PEGISQLGLLGVLSLSNNKLSGKIP-------SGTKLQTLDASSY  156 (157)
Q Consensus        93 ~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p-------~~~~l~~l~~~~~  156 (157)
                      .+|..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|++++..+       ..++++.||++.+
T Consensus        86 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           86 GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            36777778999999999999988532 2788999999999999999986654       1278888887654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.47  E-value=5.9e-15  Score=109.18  Aligned_cols=140  Identities=19%  Similarity=0.143  Sum_probs=71.3

Q ss_pred             CcEEECcCCccccccC----cchhccc-ccccc--ccccceeecCccCcCC-----CCCCEEEccCCcceeec-------
Q 039394            1 MEYLDLSDNQLSEEIP----HCSRYWQ-SLKVL--KSNHINGCVPIRLCYV-----RPVQVLDISYSSILGDI-------   61 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L--~~n~~~~~~p~~~~~l-----~~L~~L~l~~n~~~~~~-------   61 (157)
                      |++|++++|.+++..+    ..+..++ +|++|  .+|.+.+..+..+..+     ++|++|++++|.+++..       
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  103 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT  103 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence            4566777777664444    4555555 66666  5666655444444443     66666666666664321       


Q ss_pred             -----ceeeeeecccccccceE--EE----ce-eeeeccc------ccc----cccccccccc-CCCEEecCCCccCCCC
Q 039394           62 -----IIVSMIDLQMVQKKNSI--AI----IN-VVVVGEL------FKR----PIPTKIDQLT-MLHALDLSRNQPIGKI  118 (157)
Q Consensus        62 -----~~l~~l~l~~n~l~~~~--~~----~~-~~~l~~~------~~~----~~p~~~~~l~-~L~~L~l~~N~l~~~~  118 (157)
                           ++++.|++++|.+.+..  .+    .. ...++++      +..    .++..+..++ +|++|++++|++.+..
T Consensus       104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~  183 (362)
T 3goz_A          104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN  183 (362)
T ss_dssp             HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence                 35666666666665543  11    11 1223333      221    1222233333 5666666666655444


Q ss_pred             Chhhh----cC-CCCCeEEccCCccee
Q 039394          119 PEGIS----QL-GLLGVLSLSNNKLSG  140 (157)
Q Consensus       119 p~~~~----~l-~~L~~L~ls~N~l~~  140 (157)
                      +..+.    .+ ++|++|++++|.++.
T Consensus       184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          184 CAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            43332    23 356666666665554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.46  E-value=2.2e-14  Score=104.71  Aligned_cols=136  Identities=17%  Similarity=0.156  Sum_probs=101.3

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccc-ccee-ecCccCcCCCCCCEEEccCC-ccee--------ecc-eeee
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSN-HING-CVPIRLCYVRPVQVLDISYS-SILG--------DII-IVSM   66 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n-~~~~-~~p~~~~~l~~L~~L~l~~n-~~~~--------~~~-~l~~   66 (157)
                      |++|++++|.+++..+..++.+++|++|  .+| .+.+ .++..+..+++|++|++++| .+++        .+| +++.
T Consensus       120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~  199 (336)
T 2ast_B          120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ  199 (336)
T ss_dssp             CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred             CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence            6789999999988888888889999999  666 4554 35666788899999999999 7763        345 8899


Q ss_pred             eeccccc--ccc--eE-EEceeeeeccc-------cccccccccccccCCCEEecCCCc-cCCCCChhhhcCCCCCeEEc
Q 039394           67 IDLQMVQ--KKN--SI-AIINVVVVGEL-------FKRPIPTKIDQLTMLHALDLSRNQ-PIGKIPEGISQLGLLGVLSL  133 (157)
Q Consensus        67 l~l~~n~--l~~--~~-~~~~~~~l~~~-------~~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l~~L~~L~l  133 (157)
                      |++++|.  +.+  .. .+..+..++++       +....+..+..+++|++|++++|. +.......+..+++|+.|++
T Consensus       200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  279 (336)
T 2ast_B          200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV  279 (336)
T ss_dssp             EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence            9999984  432  12 33344444444       344567788899999999999996 22222235788999999999


Q ss_pred             cCC
Q 039394          134 SNN  136 (157)
Q Consensus       134 s~N  136 (157)
                      ++|
T Consensus       280 ~~~  282 (336)
T 2ast_B          280 FGI  282 (336)
T ss_dssp             TTS
T ss_pred             cCc
Confidence            998

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.46  E-value=2.8e-13  Score=105.76  Aligned_cols=38  Identities=29%  Similarity=0.333  Sum_probs=19.4

Q ss_pred             CEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394          105 HALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP  143 (157)
Q Consensus       105 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  143 (157)
                      +.|++++|++. .+|..+..+++|+.|++++|++++.+|
T Consensus       210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            55555555544 345544445555555555555554443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.45  E-value=2e-13  Score=100.54  Aligned_cols=76  Identities=8%  Similarity=-0.052  Sum_probs=39.2

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecC-ccCcCCCCCCE-EEccCCcceee-------cceeeeeec
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVP-IRLCYVRPVQV-LDISYSSILGD-------IIIVSMIDL   69 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p-~~~~~l~~L~~-L~l~~n~~~~~-------~~~l~~l~l   69 (157)
                      +++|+|++|+++...+.+|..+++|++|  ..|.+.+.+| ..|..++++.+ +.++.|++...       +++|+.+++
T Consensus        32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l  111 (350)
T 4ay9_X           32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI  111 (350)
T ss_dssp             CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred             CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence            3566777777764333456666677766  5555543333 34455555443 33344544322       125555555


Q ss_pred             ccccccc
Q 039394           70 QMVQKKN   76 (157)
Q Consensus        70 ~~n~l~~   76 (157)
                      ++|.+..
T Consensus       112 ~~n~l~~  118 (350)
T 4ay9_X          112 SNTGIKH  118 (350)
T ss_dssp             EEECCSS
T ss_pred             ccccccc
Confidence            5555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.45  E-value=1.5e-13  Score=110.15  Aligned_cols=134  Identities=19%  Similarity=0.188  Sum_probs=84.6

Q ss_pred             cEEECcCCccccccCcchhcccccccc-------ccccceeecCccCcCCCCCCEEEccCCccee------ecceeeeee
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL-------KSNHINGCVPIRLCYVRPVQVLDISYSSILG------DIIIVSMID   68 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L-------~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~------~~~~l~~l~   68 (157)
                      +.|+|.+|.+.. .+........|..+       ..|.+. ..++.+..++.|+.|++++|.+..      .+++|+.|+
T Consensus       176 ~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~  253 (727)
T 4b8c_D          176 PKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLY  253 (727)
T ss_dssp             ------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCB
T ss_pred             ceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEE
Confidence            356777787774 44444333333333       223333 567889999999999999999862      223889999


Q ss_pred             cccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC---
Q 039394           69 LQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG---  145 (157)
Q Consensus        69 l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~---  145 (157)
                      +++|.+.                 .+|..+..+++|++|++++|++. .+|..++.+++|+.|++++|.++ .+|..   
T Consensus       254 Ls~N~l~-----------------~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~  314 (727)
T 4b8c_D          254 LNGNSLT-----------------ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGN  314 (727)
T ss_dssp             CTTSCCS-----------------CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTS
T ss_pred             eeCCcCc-----------------ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhc
Confidence            9999997                 68999999999999999999988 88999999999999999999997 66765   


Q ss_pred             -CCcccccCCCC
Q 039394          146 -TKLQTLDASSY  156 (157)
Q Consensus       146 -~~l~~l~~~~~  156 (157)
                       +.|+.|+++.+
T Consensus       315 l~~L~~L~L~~N  326 (727)
T 4b8c_D          315 LCNLQFLGVEGN  326 (727)
T ss_dssp             CTTCCCEECTTS
T ss_pred             CCCccEEeCCCC
Confidence             78889998875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.43  E-value=2.6e-13  Score=105.92  Aligned_cols=122  Identities=23%  Similarity=0.327  Sum_probs=92.1

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc----eeeeeecccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII----IVSMIDLQMVQK   74 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~----~l~~l~l~~n~l   74 (157)
                      |++|++++|.+++ +|. +..  +|++|  ..|.+.+ +|.   .+++|++|++++|.+++ +|    +++.|++++|.+
T Consensus       102 L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~L  172 (571)
T 3cvr_A          102 LEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQL  172 (571)
T ss_dssp             CCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCC
T ss_pred             CCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCCcCCCcCEEECCCCCC
Confidence            5678888888885 666 543  78888  6777775 555   57888888888888774 33    778888888888


Q ss_pred             cceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCC-------CeEEccCCcceecCCCC--
Q 039394           75 KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLL-------GVLSLSNNKLSGKIPSG--  145 (157)
Q Consensus        75 ~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L-------~~L~ls~N~l~~~~p~~--  145 (157)
                      .                 .+|. +.  ++|+.|++++|++. .+|. +..  +|       +.|++++|.++ .+|..  
T Consensus       173 ~-----------------~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~  227 (571)
T 3cvr_A          173 T-----------------FLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL  227 (571)
T ss_dssp             S-----------------CCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGG
T ss_pred             C-----------------Ccch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh
Confidence            7                 4666 55  89999999999988 6776 554  67       99999999998 46664  


Q ss_pred             --CCcccccCCCC
Q 039394          146 --TKLQTLDASSY  156 (157)
Q Consensus       146 --~~l~~l~~~~~  156 (157)
                        ++++.|+++.+
T Consensus       228 ~l~~L~~L~L~~N  240 (571)
T 3cvr_A          228 SLDPTCTIILEDN  240 (571)
T ss_dssp             GSCTTEEEECCSS
T ss_pred             cCCCCCEEEeeCC
Confidence              78888888765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.42  E-value=2.5e-14  Score=105.86  Aligned_cols=141  Identities=18%  Similarity=0.146  Sum_probs=77.8

Q ss_pred             CcEEECcCCccccccCcchhcc-----cccccc--ccccceeecCcc----CcCC-CCCCEEEccCCcceeec-------
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYW-----QSLKVL--KSNHINGCVPIR----LCYV-RPVQVLDISYSSILGDI-------   61 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L--~~n~~~~~~p~~----~~~l-~~L~~L~l~~n~~~~~~-------   61 (157)
                      |++|++++|.+++..+..+..+     ++|++|  .+|.+.+..+..    +..+ ++|++|++++|.+++..       
T Consensus        53 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  132 (362)
T 3goz_A           53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA  132 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             eeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence            4667777777776656555554     677777  666666544443    2333 66777777777665321       


Q ss_pred             -----ceeeeeecccccccceE------EEceee-eeccc------cccccccc----cccc-cCCCEEecCCCccCCC-
Q 039394           62 -----IIVSMIDLQMVQKKNSI------AIINVV-VVGEL------FKRPIPTK----IDQL-TMLHALDLSRNQPIGK-  117 (157)
Q Consensus        62 -----~~l~~l~l~~n~l~~~~------~~~~~~-~l~~~------~~~~~p~~----~~~l-~~L~~L~l~~N~l~~~-  117 (157)
                           .+++.|++++|.+.+..      .+.... .++++      +....+..    +..+ ++|++|++++|.+.+. 
T Consensus       133 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~  212 (362)
T 3goz_A          133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS  212 (362)
T ss_dssp             HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence                 26666777777666422      111111 23333      33333322    2233 4677777777776642 


Q ss_pred             ---CChhhhc-CCCCCeEEccCCcceec
Q 039394          118 ---IPEGISQ-LGLLGVLSLSNNKLSGK  141 (157)
Q Consensus       118 ---~p~~~~~-l~~L~~L~ls~N~l~~~  141 (157)
                         ++..+.. .++|++|++++|.+++.
T Consensus       213 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          213 YAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence               3444444 34677777777776553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.40  E-value=1.5e-12  Score=95.55  Aligned_cols=101  Identities=23%  Similarity=0.148  Sum_probs=78.3

Q ss_pred             EEECcCC-ccccccCcchhcccccccc--cc-ccceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceE
Q 039394            3 YLDLSDN-QLSEEIPHCSRYWQSLKVL--KS-NHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSI   78 (157)
Q Consensus         3 ~L~L~~n-~l~~~~p~~~~~l~~L~~L--~~-n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~   78 (157)
                      .++++++ +++ .+|. +..+.+|++|  .+ |.+.+..+..|..+++|++|++++|++++                   
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-------------------   70 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-------------------   70 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-------------------
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-------------------
Confidence            4577777 777 5777 8888888888  54 78887777788888888888888888775                   


Q ss_pred             EEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394           79 AIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        79 ~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                                    ..|..|..+++|++|++++|++.+..+..+..+. |+.|++++|++.
T Consensus        71 --------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           71 --------------VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             --------------ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             --------------eCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence                          4566778888899999999998865555666555 889999988875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.37  E-value=5.5e-13  Score=98.22  Aligned_cols=151  Identities=20%  Similarity=0.196  Sum_probs=95.6

Q ss_pred             CcEEECcCCccccccC-cchhcccccccc---ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeec
Q 039394            1 MEYLDLSDNQLSEEIP-HCSRYWQSLKVL---KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDL   69 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p-~~~~~l~~L~~L---~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l   69 (157)
                      |++|+|++|.+.+.+| .+|..+++++.+   ..|.+....|..+..+++|++|++++|.+.+..+       .+..+++
T Consensus        56 L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l  135 (350)
T 4ay9_X           56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI  135 (350)
T ss_dssp             CCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred             CCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence            6788999998865555 456777777654   5677887777888888999999998888764322       4455555


Q ss_pred             cc-ccccceE--EEceee-eeccc------cccccccccccccCCCEEecCCCccCCCCC-hhhhcCCCCCeEEccCCcc
Q 039394           70 QM-VQKKNSI--AIINVV-VVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIP-EGISQLGLLGVLSLSNNKL  138 (157)
Q Consensus        70 ~~-n~l~~~~--~~~~~~-~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l  138 (157)
                      .+ +.+....  .+..+. .+..+      +. .+|.......+++.+++++++..+.+| +.|..+++|+.||+++|++
T Consensus       136 ~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l  214 (350)
T 4ay9_X          136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI  214 (350)
T ss_dssp             ESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred             ccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence            44 3444332  222211 11111      22 445555555678888887643344555 4678899999999999998


Q ss_pred             eecCCCC-CCccccc
Q 039394          139 SGKIPSG-TKLQTLD  152 (157)
Q Consensus       139 ~~~~p~~-~~l~~l~  152 (157)
                      +...+.. ..++.|.
T Consensus       215 ~~lp~~~~~~L~~L~  229 (350)
T 4ay9_X          215 HSLPSYGLENLKKLR  229 (350)
T ss_dssp             CCCCSSSCTTCCEEE
T ss_pred             CccChhhhccchHhh
Confidence            8543332 4444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.36  E-value=1.4e-12  Score=87.19  Aligned_cols=118  Identities=15%  Similarity=0.079  Sum_probs=93.3

Q ss_pred             chhcccccccc--ccccceeecCccCcCCC-CCCEEEccCCcceee-----cceeeeeecccccccceEEEceeeeeccc
Q 039394           18 CSRYWQSLKVL--KSNHINGCVPIRLCYVR-PVQVLDISYSSILGD-----IIIVSMIDLQMVQKKNSIAIINVVVVGEL   89 (157)
Q Consensus        18 ~~~~l~~L~~L--~~n~~~~~~p~~~~~l~-~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~l~~~~~~~~~~~l~~~   89 (157)
                      .+..+.+|+.|  .+|.+.. +|. +..+. +|++|++++|.+++.     +++++.|++++|.+.              
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~--------------   77 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC--------------   77 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCC--------------
T ss_pred             hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccc--------------
Confidence            45667888998  7787774 454 45554 999999999998753     348899999999997              


Q ss_pred             cccccccc-cccccCCCEEecCCCccCCCCCh--hhhcCCCCCeEEccCCcceecCCCC--------CCcccccCCCC
Q 039394           90 FKRPIPTK-IDQLTMLHALDLSRNQPIGKIPE--GISQLGLLGVLSLSNNKLSGKIPSG--------TKLQTLDASSY  156 (157)
Q Consensus        90 ~~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~--~~~~l~~L~~L~ls~N~l~~~~p~~--------~~l~~l~~~~~  156 (157)
                         .+|.. +..+++|++|++++|++. .+|.  .+..+++|+.|++++|++.. +|..        +.++.+|++.+
T Consensus        78 ---~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           78 ---RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             ---EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEEC
T ss_pred             ---ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcC
Confidence               35544 488999999999999985 6776  78999999999999999974 4541        78888887654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.33  E-value=3.9e-12  Score=100.25  Aligned_cols=44  Identities=27%  Similarity=0.332  Sum_probs=31.3

Q ss_pred             cccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCC
Q 039394          100 QLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPS  144 (157)
Q Consensus       100 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~  144 (157)
                      .+++|+.|++++|++. .+|..+..+++|+.|++++|++++.+|.
T Consensus       259 ~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          259 LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            4566777777777766 6677777777777777777777665544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.31  E-value=9.2e-14  Score=105.31  Aligned_cols=58  Identities=22%  Similarity=0.146  Sum_probs=26.6

Q ss_pred             CcEEECcCCccccc----cCcchhcccccccc--ccccceeec-----CccCcCCCCCCEEEccCCcce
Q 039394            1 MEYLDLSDNQLSEE----IPHCSRYWQSLKVL--KSNHINGCV-----PIRLCYVRPVQVLDISYSSIL   58 (157)
Q Consensus         1 L~~L~L~~n~l~~~----~p~~~~~l~~L~~L--~~n~~~~~~-----p~~~~~l~~L~~L~l~~n~~~   58 (157)
                      |++|++++|.+++.    ++..+..+++|++|  ..|.+....     +..+..+++|++|++++|.++
T Consensus       201 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~  269 (461)
T 1z7x_W          201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT  269 (461)
T ss_dssp             CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            34555555555532    34444455555555  444443211     111223455555555555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.30  E-value=6.6e-14  Score=95.37  Aligned_cols=117  Identities=21%  Similarity=0.206  Sum_probs=97.1

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-----cceeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~   73 (157)
                      |++|++++|.+++ +| .+..+++|++|  ..|.+. .+|..+..+++|++|++++|.+++.     +++++.|++++|.
T Consensus        50 L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~  126 (198)
T 1ds9_A           50 CKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             CSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEE
T ss_pred             CCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCc
Confidence            6789999999995 67 89999999999  778777 6777777889999999999998752     3389999999999


Q ss_pred             ccceEEEceeeeeccccccccc--cccccccCCCEEecCCCccCCCCCh----------hhhcCCCCCeEEccCCcce
Q 039394           74 KKNSIAIINVVVVGELFKRPIP--TKIDQLTMLHALDLSRNQPIGKIPE----------GISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        74 l~~~~~~~~~~~l~~~~~~~~p--~~~~~l~~L~~L~l~~N~l~~~~p~----------~~~~l~~L~~L~ls~N~l~  139 (157)
                      +.+                 ++  ..+..+++|+++++++|.+.+..|.          .+..+++|+.||  +|+++
T Consensus       127 i~~-----------------~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          127 ITN-----------------WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             CCC-----------------HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCc-----------------hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            973                 33  3688899999999999999776554          378899999987  56554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.30  E-value=1.9e-11  Score=96.44  Aligned_cols=50  Identities=18%  Similarity=0.459  Sum_probs=23.0

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcce
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL   58 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~   58 (157)
                      +.|++++|.++ .+|..+.  ++|++|  .+|.+. .+|.   .+++|++|++++|.++
T Consensus        43 ~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~   94 (622)
T 3g06_A           43 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT   94 (622)
T ss_dssp             CEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS
T ss_pred             cEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC
Confidence            34555555555 4444333  445555  444444 2333   2344555555555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.27  E-value=6.5e-13  Score=100.64  Aligned_cols=141  Identities=16%  Similarity=0.078  Sum_probs=93.5

Q ss_pred             CcEEECcCCcccccc-----Ccchhcccccccc--ccccceee----cCccCcCCCCCCEEEccCCcceee---------
Q 039394            1 MEYLDLSDNQLSEEI-----PHCSRYWQSLKVL--KSNHINGC----VPIRLCYVRPVQVLDISYSSILGD---------   60 (157)
Q Consensus         1 L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L--~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~---------   60 (157)
                      |++|++++|.+.+.-     +..+..+++|++|  ..|.+...    ++..+..+++|++|++++|.+.+.         
T Consensus       229 L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  308 (461)
T 1z7x_W          229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL  308 (461)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH
T ss_pred             ccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh
Confidence            578888888877532     1222346788888  67776643    566677788888888888887521         


Q ss_pred             ---cceeeeeecccccccceE------EEceeeeeccc------ccccccccccc-----ccCCCEEecCCCccCC----
Q 039394           61 ---IIIVSMIDLQMVQKKNSI------AIINVVVVGEL------FKRPIPTKIDQ-----LTMLHALDLSRNQPIG----  116 (157)
Q Consensus        61 ---~~~l~~l~l~~n~l~~~~------~~~~~~~l~~~------~~~~~p~~~~~-----l~~L~~L~l~~N~l~~----  116 (157)
                         .++++.|++++|.+.+..      .+..+..++++      +....+..+..     .++|++|++++|.+.+    
T Consensus       309 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  388 (461)
T 1z7x_W          309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS  388 (461)
T ss_dssp             TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred             ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHH
Confidence               137888888888877542      22233333333      22222332322     5688889999888775    


Q ss_pred             CCChhhhcCCCCCeEEccCCcceec
Q 039394          117 KIPEGISQLGLLGVLSLSNNKLSGK  141 (157)
Q Consensus       117 ~~p~~~~~l~~L~~L~ls~N~l~~~  141 (157)
                      .+|..+..+++|++|++++|++++.
T Consensus       389 ~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          389 SLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHHHHHhCCCccEEECCCCCCCHH
Confidence            6777888888899999998888654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.24  E-value=2.4e-11  Score=80.86  Aligned_cols=84  Identities=18%  Similarity=0.085  Sum_probs=72.2

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceE
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSI   78 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~   78 (157)
                      |++|++++|.+++..|..+..+++|++|  .+|.+.+..+..+..+++|++|++++|++++                   
T Consensus        32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-------------------   92 (170)
T 3g39_A           32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-------------------   92 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------------
T ss_pred             CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-------------------
Confidence            5789999999998888899999999999  8999997777778999999999999999874                   


Q ss_pred             EEceeeeeccccccccccccccccCCCEEecCCCccCCC
Q 039394           79 AIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK  117 (157)
Q Consensus        79 ~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~  117 (157)
                                    ..+..+..+++|++|++++|.+...
T Consensus        93 --------------~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           93 --------------IPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             --------------CCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             --------------eCHHHhcCCCCCCEEEeCCCCCCCC
Confidence                          2334578889999999999988754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.22  E-value=3.7e-11  Score=80.26  Aligned_cols=83  Identities=22%  Similarity=0.201  Sum_probs=71.1

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceE
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSI   78 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~   78 (157)
                      |++|++++|++++..|..+..+++|++|  ..|.+.+..+..+..+++|++|++++|.+++                   
T Consensus        35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-------------------   95 (174)
T 2r9u_A           35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-------------------   95 (174)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------------
T ss_pred             CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-------------------
Confidence            5789999999998888899999999999  8899987666667899999999999999873                   


Q ss_pred             EEceeeeecccccccccc-ccccccCCCEEecCCCccCCC
Q 039394           79 AIINVVVVGELFKRPIPT-KIDQLTMLHALDLSRNQPIGK  117 (157)
Q Consensus        79 ~~~~~~~l~~~~~~~~p~-~~~~l~~L~~L~l~~N~l~~~  117 (157)
                                     +|. .+..+++|++|++++|.+...
T Consensus        96 ---------------l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           96 ---------------IPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             ---------------CCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ---------------eCHHHhccccCCCEEEeCCCCcccc
Confidence                           443 478889999999999998743

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=9.5e-11  Score=85.92  Aligned_cols=90  Identities=19%  Similarity=0.067  Sum_probs=74.8

Q ss_pred             cceeecCccCcCCCCCCEEEccC-CcceeecceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecC
Q 039394           32 HINGCVPIRLCYVRPVQVLDISY-SSILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLS  110 (157)
Q Consensus        32 ~~~~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~  110 (157)
                      .+. .+|. +..+++|++|++++ |.+.+                                 ..+..+..+++|+.|+++
T Consensus        20 ~l~-~ip~-l~~~~~L~~L~l~~~n~l~~---------------------------------~~~~~~~~l~~L~~L~l~   64 (347)
T 2ifg_A           20 ALD-SLHH-LPGAENLTELYIENQQHLQH---------------------------------LELRDLRGLGELRNLTIV   64 (347)
T ss_dssp             CCT-TTTT-SCSCSCCSEEECCSCSSCCE---------------------------------ECGGGSCSCCCCSEEECC
T ss_pred             CCC-ccCC-CCCCCCeeEEEccCCCCCCC---------------------------------cChhHhccccCCCEEECC
Confidence            666 4777 88899999999986 88874                                 345678999999999999


Q ss_pred             CCccCCCCChhhhcCCCCCeEEccCCcceecCCCC---CCcccccCCCC
Q 039394          111 RNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG---TKLQTLDASSY  156 (157)
Q Consensus       111 ~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~---~~l~~l~~~~~  156 (157)
                      +|++.+..|..|..+++|+.|++++|.|++..+..   ..|+.|++..+
T Consensus        65 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           65 KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             SSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred             CCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCC
Confidence            99999988999999999999999999999765544   34777877654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.07  E-value=4.3e-12  Score=94.37  Aligned_cols=139  Identities=14%  Similarity=0.126  Sum_probs=68.2

Q ss_pred             CcEEECcCCccccccCcchhcc-----cccccc--ccccceeecCccC-cCCCCCCEEEccCCcceee------------
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYW-----QSLKVL--KSNHINGCVPIRL-CYVRPVQVLDISYSSILGD------------   60 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L--~~n~~~~~~p~~~-~~l~~L~~L~l~~n~~~~~------------   60 (157)
                      |+.|++++|.++......+...     .+|+.|  ..|.+.......+ ..+++|++|++++|.++..            
T Consensus        74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~  153 (372)
T 3un9_A           74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD  153 (372)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHST
T ss_pred             CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhc
Confidence            4567777777764433333322     466666  5555543222222 2245666777777766421            


Q ss_pred             cceeeeeecccccccceE------EEceeeeeccc------ccc----ccccccccccCCCEEecCCCccCCC----CCh
Q 039394           61 IIIVSMIDLQMVQKKNSI------AIINVVVVGEL------FKR----PIPTKIDQLTMLHALDLSRNQPIGK----IPE  120 (157)
Q Consensus        61 ~~~l~~l~l~~n~l~~~~------~~~~~~~l~~~------~~~----~~p~~~~~l~~L~~L~l~~N~l~~~----~p~  120 (157)
                      .+.++.|++++|.+.+..      .+.....++++      +..    .++..+...++|+.|++++|.+...    ++.
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            135666777777665321      11111112222      111    1233444555666666666665432    233


Q ss_pred             hhhcCCCCCeEEccCCcce
Q 039394          121 GISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus       121 ~~~~l~~L~~L~ls~N~l~  139 (157)
                      .+...++|++|++++|.++
T Consensus       234 ~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          234 AAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHCSSCCEEECTTSSCC
T ss_pred             HHHhCCCCCEEeccCCCCC
Confidence            3444566666666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.02  E-value=6.2e-10  Score=81.19  Aligned_cols=57  Identities=14%  Similarity=0.113  Sum_probs=42.5

Q ss_pred             CcEEECcCCccc--------------------cccCcchhc--------ccccccc-ccccceeecCccCcCCCCCCEEE
Q 039394            1 MEYLDLSDNQLS--------------------EEIPHCSRY--------WQSLKVL-KSNHINGCVPIRLCYVRPVQVLD   51 (157)
Q Consensus         1 L~~L~L~~n~l~--------------------~~~p~~~~~--------l~~L~~L-~~n~~~~~~p~~~~~l~~L~~L~   51 (157)
                      |++|||++|++.                    ...+.+|..        +.+|+.+ -.+.+....+.+|..+++|+.++
T Consensus        51 L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~  130 (329)
T 3sb4_A           51 LKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSEKIKNIEDAAFKGCDNLKICQ  130 (329)
T ss_dssp             CCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCTTCCEECTTTTTTCTTCCEEE
T ss_pred             CeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCccccchhHHHhhcCcccceEE
Confidence            678899999887                    122345666        8899988 33377766777899999999999


Q ss_pred             ccCCcc
Q 039394           52 ISYSSI   57 (157)
Q Consensus        52 l~~n~~   57 (157)
                      ++.|.+
T Consensus       131 l~~n~i  136 (329)
T 3sb4_A          131 IRKKTA  136 (329)
T ss_dssp             BCCSSC
T ss_pred             cCCCCc
Confidence            988865

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.95  E-value=7.9e-11  Score=87.57  Aligned_cols=125  Identities=14%  Similarity=0.063  Sum_probs=69.2

Q ss_pred             CcEEECcCCccccccCcch-hcccccccc--ccccceeecCccC-----cCCCCCCEEEccCCccee-----------ec
Q 039394            1 MEYLDLSDNQLSEEIPHCS-RYWQSLKVL--KSNHINGCVPIRL-----CYVRPVQVLDISYSSILG-----------DI   61 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~-~~l~~L~~L--~~n~~~~~~p~~~-----~~l~~L~~L~l~~n~~~~-----------~~   61 (157)
                      |++|+|++|.++......+ ..+++|+.|  .+|.+.......+     ...++|++|++++|.++.           ..
T Consensus       103 L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~  182 (372)
T 3un9_A          103 LDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN  182 (372)
T ss_dssp             EEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTC
T ss_pred             ceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcC
Confidence            3567777777664322222 335566666  5565543322222     234566777777776642           12


Q ss_pred             ceeeeeecccccccceE------EEceeeeeccc------ccc----ccccccccccCCCEEecCCCccCCCCChhhhcC
Q 039394           62 IIVSMIDLQMVQKKNSI------AIINVVVVGEL------FKR----PIPTKIDQLTMLHALDLSRNQPIGKIPEGISQL  125 (157)
Q Consensus        62 ~~l~~l~l~~n~l~~~~------~~~~~~~l~~~------~~~----~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l  125 (157)
                      ++++.|++++|.+.+..      .+.....++++      +..    .++..+...++|++|++++|.+.......+..+
T Consensus       183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~  262 (372)
T 3un9_A          183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL  262 (372)
T ss_dssp             SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred             CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence            36666777777665422      22223333333      211    234456677899999999999876555555444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.77  E-value=5.3e-10  Score=87.09  Aligned_cols=48  Identities=15%  Similarity=0.076  Sum_probs=36.5

Q ss_pred             cccccccccCCCEEecCCCccCCC-CChhhhcCCCCCeEEccCCcceec
Q 039394           94 IPTKIDQLTMLHALDLSRNQPIGK-IPEGISQLGLLGVLSLSNNKLSGK  141 (157)
Q Consensus        94 ~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~  141 (157)
                      ++..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|+++..
T Consensus       480 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            455567788999999999987644 344456788999999999987654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.72  E-value=8.8e-10  Score=85.84  Aligned_cols=134  Identities=12%  Similarity=0.058  Sum_probs=70.5

Q ss_pred             CcEEECcCCc-ccc-ccCcchhcccccccc--ccccceee----cCccCcCCCCCCEEEccCCcce----e-------ec
Q 039394            1 MEYLDLSDNQ-LSE-EIPHCSRYWQSLKVL--KSNHINGC----VPIRLCYVRPVQVLDISYSSIL----G-------DI   61 (157)
Q Consensus         1 L~~L~L~~n~-l~~-~~p~~~~~l~~L~~L--~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~----~-------~~   61 (157)
                      |++|++++|. ++. .++.....+++|++|  ..|.+.+.    ++.....+++|++|++++|.+.    +       ..
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            4667776665 211 122223456777777  55555433    2223445667777777777664    1       12


Q ss_pred             ceeeeeecccccccceE-EEceeeeeccc--------------------------------cccccccccccccCCCEEe
Q 039394           62 IIVSMIDLQMVQKKNSI-AIINVVVVGEL--------------------------------FKRPIPTKIDQLTMLHALD  108 (157)
Q Consensus        62 ~~l~~l~l~~n~l~~~~-~~~~~~~l~~~--------------------------------~~~~~p~~~~~l~~L~~L~  108 (157)
                      ++++.|++++|.+.+.. .+..+..++++                                ....+|..+..+++|++|+
T Consensus       220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~  299 (592)
T 3ogk_B          220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD  299 (592)
T ss_dssp             TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEE
T ss_pred             CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEe
Confidence            36677777766655432 11111111111                                1223455566677777777


Q ss_pred             cCCCccCCCCC-hhhhcCCCCCeEEcc
Q 039394          109 LSRNQPIGKIP-EGISQLGLLGVLSLS  134 (157)
Q Consensus       109 l~~N~l~~~~p-~~~~~l~~L~~L~ls  134 (157)
                      +++|.+.+... ..+..+++|+.|+++
T Consensus       300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          300 LLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             ETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             cCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            77777543322 334566677777766

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.63  E-value=6.1e-09  Score=81.06  Aligned_cols=73  Identities=14%  Similarity=0.178  Sum_probs=40.9

Q ss_pred             CcEEECcCCccccccCcchh-cccccccc--ccc-cceee-cCccCcCCCCCCEEEccCCccee-----------eccee
Q 039394            1 MEYLDLSDNQLSEEIPHCSR-YWQSLKVL--KSN-HINGC-VPIRLCYVRPVQVLDISYSSILG-----------DIIIV   64 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~-~l~~L~~L--~~n-~~~~~-~p~~~~~l~~L~~L~l~~n~~~~-----------~~~~l   64 (157)
                      |++|++++|.+++..+..+. .+++|++|  ..| .+... ++.....+++|++|++++|.+++           ..+++
T Consensus       107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L  186 (594)
T 2p1m_B          107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL  186 (594)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred             CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence            45667777766655554453 46667776  344 22221 33333456777777777776542           12266


Q ss_pred             eeeeccccc
Q 039394           65 SMIDLQMVQ   73 (157)
Q Consensus        65 ~~l~l~~n~   73 (157)
                      +.|++++|.
T Consensus       187 ~~L~l~~~~  195 (594)
T 2p1m_B          187 VSLNISCLA  195 (594)
T ss_dssp             CEEECTTCC
T ss_pred             cEEEecccC
Confidence            667766665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.50  E-value=1.9e-07  Score=66.29  Aligned_cols=78  Identities=21%  Similarity=0.224  Sum_probs=56.4

Q ss_pred             cceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCC--CCCeEEccCCcc
Q 039394           61 IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLG--LLGVLSLSNNKL  138 (157)
Q Consensus        61 ~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~--~L~~L~ls~N~l  138 (157)
                      +|.++.|++++|.+.+.              ..+|..+..+++|+.|++++|++.+.  ..+..+.  +|++|++++|++
T Consensus       169 l~~L~~L~Ls~N~l~~l--------------~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl  232 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRL--------------DDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSL  232 (267)
T ss_dssp             CTTCCEEECTTSCCCCC--------------GGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTT
T ss_pred             CCCCCEEECCCCCCCCC--------------ccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcC
Confidence            45777777888877632              12456667889999999999998854  3344444  899999999999


Q ss_pred             eecCCCC-----------CCcccccCC
Q 039394          139 SGKIPSG-----------TKLQTLDAS  154 (157)
Q Consensus       139 ~~~~p~~-----------~~l~~l~~~  154 (157)
                      .+.+|..           ++|+.||-.
T Consensus       233 ~~~~~~~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          233 CDTFRDQSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             GGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred             ccccCcchhHHHHHHHHCcccCeECCc
Confidence            8877632           777777754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.50  E-value=3.5e-07  Score=66.54  Aligned_cols=92  Identities=7%  Similarity=-0.085  Sum_probs=47.1

Q ss_pred             ccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc--------eee-eeecccccccceEEEceeeeecccc
Q 039394           22 WQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII--------IVS-MIDLQMVQKKNSIAIINVVVVGELF   90 (157)
Q Consensus        22 l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~--------~l~-~l~l~~n~l~~~~~~~~~~~l~~~~   90 (157)
                      +.+|+.+  ..|.+....+..|..+++|+.+++..| ++. ++        +|+ .+++.. .+.               
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~-~l~---------------  286 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA-SVT---------------  286 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT-TCC---------------
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc-cce---------------
Confidence            5566666  555566555556666777777776665 331 10        222 222222 111               


Q ss_pred             ccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEE
Q 039394           91 KRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLS  132 (157)
Q Consensus        91 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  132 (157)
                       ...+.+|..|++|+.++++.|++....+.+|..+++|+.++
T Consensus       287 -~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          287 -AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             -EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             -EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence             02234555566666666666655544444556666665554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.49  E-value=4.2e-09  Score=82.00  Aligned_cols=56  Identities=14%  Similarity=0.021  Sum_probs=33.6

Q ss_pred             ccCCCEEecCCCccCCCCChhh-hcCCCCCeEEccCCcceecCCC-----CCCcccccCCCC
Q 039394          101 LTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPS-----GTKLQTLDASSY  156 (157)
Q Consensus       101 l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~-----~~~l~~l~~~~~  156 (157)
                      +++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+++..+.     .++++.|+++.+
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~  516 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC  516 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence            6677777777777654444443 5577777777777776432221     156666666543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.38  E-value=6e-08  Score=65.20  Aligned_cols=111  Identities=10%  Similarity=-0.047  Sum_probs=77.9

Q ss_pred             cchhcccccccc--ccc-ccee----ecCccCcCCCCCCEEEccCCcceee-----------cceeeeeecccccccceE
Q 039394           17 HCSRYWQSLKVL--KSN-HING----CVPIRLCYVRPVQVLDISYSSILGD-----------IIIVSMIDLQMVQKKNSI   78 (157)
Q Consensus        17 ~~~~~l~~L~~L--~~n-~~~~----~~p~~~~~l~~L~~L~l~~n~~~~~-----------~~~l~~l~l~~n~l~~~~   78 (157)
                      ..+...++|++|  ..| .+..    .+...+...++|++|++++|.+...           .++++.|++++|.+.+..
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            344556777777  555 5543    2344566678899999999988531           137888999999887420


Q ss_pred             EEceeeeeccccccccccccccccCCCEEec--CCCccCCC----CChhhhcCCCCCeEEccCCcce
Q 039394           79 AIINVVVVGELFKRPIPTKIDQLTMLHALDL--SRNQPIGK----IPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        79 ~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l--~~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                                  ...+...+...++|++|++  ++|.+...    +.+.+...++|++|++++|.+.
T Consensus       110 ------------~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ------------ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             ------------HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             ------------HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence                        0023456777789999999  88998754    4455666789999999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.36  E-value=1.7e-07  Score=66.59  Aligned_cols=73  Identities=15%  Similarity=0.135  Sum_probs=54.4

Q ss_pred             cCCCCCCEEEccCCccee---------ecceeeeeecccccccceEEEceeeeecccccccccccccccc--CCCEEecC
Q 039394           42 CYVRPVQVLDISYSSILG---------DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLT--MLHALDLS  110 (157)
Q Consensus        42 ~~l~~L~~L~l~~n~~~~---------~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~--~L~~L~l~  110 (157)
                      ..+++|+.|++++|.+++         .+|+|+.|++++|.+.+                 + ..+..+.  .|++|+++
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-----------------~-~~l~~l~~l~L~~L~L~  228 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-----------------E-RELDKIKGLKLEELWLD  228 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-----------------G-GGGGGGTTSCCSEEECT
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-----------------c-hhhhhcccCCcceEEcc
Confidence            456788888888888765         23478888888888873                 2 2234444  89999999


Q ss_pred             CCccCCCCCh-------hhhcCCCCCeEE
Q 039394          111 RNQPIGKIPE-------GISQLGLLGVLS  132 (157)
Q Consensus       111 ~N~l~~~~p~-------~~~~l~~L~~L~  132 (157)
                      +|.+.+.+|+       .+..+++|+.||
T Consensus       229 ~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          229 GNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            9999887763       477899999887

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.22  E-value=3e-07  Score=61.73  Aligned_cols=108  Identities=11%  Similarity=0.081  Sum_probs=78.6

Q ss_pred             cCccCcCCCCCCEEEccCC-cceee-----------cceeeeeecccccccceEEEceeeeeccccccccccccccccCC
Q 039394           37 VPIRLCYVRPVQVLDISYS-SILGD-----------IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTML  104 (157)
Q Consensus        37 ~p~~~~~l~~L~~L~l~~n-~~~~~-----------~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L  104 (157)
                      +...+...+.|++|++++| .+...           .++++.|++++|.+.+..            ...+...+...++|
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g------------~~~l~~~L~~n~~L   95 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV------------AFALAEMLKVNNTL   95 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH------------HHHHHHHHHHCSSC
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHH------------HHHHHHHHHhCCCc
Confidence            3445677889999999999 87521           238999999999987421            00234456667889


Q ss_pred             CEEecCCCccCCC----CChhhhcCCCCCeEEc--cCCcceecC----CCC----CCcccccCCCC
Q 039394          105 HALDLSRNQPIGK----IPEGISQLGLLGVLSL--SNNKLSGKI----PSG----TKLQTLDASSY  156 (157)
Q Consensus       105 ~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l--s~N~l~~~~----p~~----~~l~~l~~~~~  156 (157)
                      ++|++++|.+...    +.+.+...+.|++|++  ++|.++..-    ...    +.++.|+++.+
T Consensus        96 ~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A           96 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             CEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            9999999998753    4566777889999999  889986532    111    77888888764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.10  E-value=7e-07  Score=66.11  Aligned_cols=53  Identities=13%  Similarity=0.043  Sum_probs=35.2

Q ss_pred             cCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee---------ecceeeeeecc
Q 039394           15 IPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG---------DIIIVSMIDLQ   70 (157)
Q Consensus        15 ~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~---------~~~~l~~l~l~   70 (157)
                      ++..+..+++|+.|  .++.-. .++. + .+++|++|++..+.+..         .+|+|+.|+++
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            44455777889999  444211 2333 3 37889999998887642         46788888875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.08  E-value=3.7e-06  Score=62.22  Aligned_cols=141  Identities=11%  Similarity=0.073  Sum_probs=75.7

Q ss_pred             Ccchhcccccccc-c-cccc---------eeecCccCcCCCCCCEEEccCCc-ce---eecceeeeeecccccccceE--
Q 039394           16 PHCSRYWQSLKVL-K-SNHI---------NGCVPIRLCYVRPVQVLDISYSS-IL---GDIIIVSMIDLQMVQKKNSI--   78 (157)
Q Consensus        16 p~~~~~l~~L~~L-~-~n~~---------~~~~p~~~~~l~~L~~L~l~~n~-~~---~~~~~l~~l~l~~n~l~~~~--   78 (157)
                      ..+...+++|+.| . ....         .+.+...+..+++|+.|.+++|. +.   -..++|+.|++..+.+....  
T Consensus       132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHH
T ss_pred             HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHH
Confidence            3445566777777 2 2211         11233445667888888887773 21   01357888888777665322  


Q ss_pred             EEc--eeeeeccc-cc-------cc-----ccccc--ccccCCCEEecCCCccCCCCChhhh---cCCCCCeEEccCCcc
Q 039394           79 AII--NVVVVGEL-FK-------RP-----IPTKI--DQLTMLHALDLSRNQPIGKIPEGIS---QLGLLGVLSLSNNKL  138 (157)
Q Consensus        79 ~~~--~~~~l~~~-~~-------~~-----~p~~~--~~l~~L~~L~l~~N~l~~~~p~~~~---~l~~L~~L~ls~N~l  138 (157)
                      .+.  .++.+..+ +.       +.     +...+  ..+++|++|++++|.+.+..+..+.   .++.|+.|+++.|.+
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence            111  22333332 10       00     11112  2467788888877776543333333   466778888888777


Q ss_pred             eec----CCCC----CCcccccCCCC
Q 039394          139 SGK----IPSG----TKLQTLDASSY  156 (157)
Q Consensus       139 ~~~----~p~~----~~l~~l~~~~~  156 (157)
                      ...    ++..    +.|+.|+++.+
T Consensus       292 ~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          292 TDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             BHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             ChHHHHHHHhhcccCCcceEEECCCC
Confidence            652    3332    66777776543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.93  E-value=8.6e-05  Score=55.62  Aligned_cols=40  Identities=8%  Similarity=-0.046  Sum_probs=22.1

Q ss_pred             cccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCC
Q 039394           96 TKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNN  136 (157)
Q Consensus        96 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N  136 (157)
                      ..|..|++|+.+++.. .+...-..+|..|.+|+.+++..|
T Consensus       294 ~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          294 YCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             TTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred             HHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence            3455566666666653 334333445666666666666443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.93  E-value=7.1e-05  Score=56.08  Aligned_cols=41  Identities=7%  Similarity=-0.089  Sum_probs=27.5

Q ss_pred             ccccccccCCCEEecCCCccC-----CCCChhhhcCCCCCeEEccC
Q 039394           95 PTKIDQLTMLHALDLSRNQPI-----GKIPEGISQLGLLGVLSLSN  135 (157)
Q Consensus        95 p~~~~~l~~L~~L~l~~N~l~-----~~~p~~~~~l~~L~~L~ls~  135 (157)
                      ..+|..|++|+.+++.+|.+.     ...+.+|..|++|+.+++..
T Consensus       264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~  309 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE  309 (401)
T ss_dssp             TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred             hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence            445677777887777776643     23455677777888877774

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.17  E-value=0.00016  Score=48.10  Aligned_cols=77  Identities=17%  Similarity=0.156  Sum_probs=48.1

Q ss_pred             CCCCEEEccCCccee-------ecceeeeeeccccc-ccceEEEceeeeecccccccccccccc----ccCCCEEecCCC
Q 039394           45 RPVQVLDISYSSILG-------DIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQ----LTMLHALDLSRN  112 (157)
Q Consensus        45 ~~L~~L~l~~n~~~~-------~~~~l~~l~l~~n~-l~~~~~~~~~~~l~~~~~~~~p~~~~~----l~~L~~L~l~~N  112 (157)
                      .+|+.||++++.++.       .+++|+.|++++|. +++.                .-..+..    +++|++|+++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~----------------gL~~L~~~~~~~~~L~~L~Ls~C  124 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG----------------CLERLSQLENLQKSMLEMEIISC  124 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH----------------HHHHHHTCHHHHHHCCEEEEESC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH----------------HHHHHHhcccccCCCCEEEcCCC
Confidence            357777777776542       23466777777664 3321                1112333    346889999887


Q ss_pred             c-cCCCCChhhhcCCCCCeEEccCCc
Q 039394          113 Q-PIGKIPEGISQLGLLGVLSLSNNK  137 (157)
Q Consensus       113 ~-l~~~~p~~~~~l~~L~~L~ls~N~  137 (157)
                      . ++..--..+..+++|+.|++++++
T Consensus       125 ~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          125 GNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             CcCCHHHHHHHhcCCCCCEEECCCCC
Confidence            4 554444456788899999999875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.98  E-value=0.00015  Score=48.16  Aligned_cols=77  Identities=9%  Similarity=-0.003  Sum_probs=53.4

Q ss_pred             cccccc--ccccceeecCccCcCCCCCCEEEccCCc-cee-------e----cceeeeeeccccc-ccceEEEceeeeec
Q 039394           23 QSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSS-ILG-------D----IIIVSMIDLQMVQ-KKNSIAIINVVVVG   87 (157)
Q Consensus        23 ~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~-~~~-------~----~~~l~~l~l~~n~-l~~~~~~~~~~~l~   87 (157)
                      ..|+.|  +++.++...-..+..+++|++|+++++. ++.       .    .++|+.|++++|. +++           
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD-----------  129 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD-----------  129 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH-----------
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH-----------
Confidence            357777  6666665555567889999999999885 441       1    1368899998875 543           


Q ss_pred             cccccccccccccccCCCEEecCCCccC
Q 039394           88 ELFKRPIPTKIDQLTMLHALDLSRNQPI  115 (157)
Q Consensus        88 ~~~~~~~p~~~~~l~~L~~L~l~~N~l~  115 (157)
                           .--..+..+++|++|+++++.-.
T Consensus       130 -----~Gl~~L~~~~~L~~L~L~~c~~I  152 (176)
T 3e4g_A          130 -----KGIIALHHFRNLKYLFLSDLPGV  152 (176)
T ss_dssp             -----HHHHHGGGCTTCCEEEEESCTTC
T ss_pred             -----HHHHHHhcCCCCCEEECCCCCCC
Confidence                 12234667899999999987633

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.83  E-value=0.0018  Score=40.69  Aligned_cols=36  Identities=22%  Similarity=0.125  Sum_probs=25.1

Q ss_pred             CCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcc
Q 039394          103 MLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKL  138 (157)
Q Consensus       103 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l  138 (157)
                      ++++|++++|+|....+..|..+++|+.|++++|++
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            567777777777755555667777777777777765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.64  E-value=0.018  Score=42.61  Aligned_cols=104  Identities=12%  Similarity=0.066  Sum_probs=63.9

Q ss_pred             Ccchhcccccccc-ccccceeecCccCcCCCCCCEEEccCCccee-------ecceeeeeecccccccceEEEceeeeec
Q 039394           16 PHCSRYWQSLKVL-KSNHINGCVPIRLCYVRPVQVLDISYSSILG-------DIIIVSMIDLQMVQKKNSIAIINVVVVG   87 (157)
Q Consensus        16 p~~~~~l~~L~~L-~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-------~~~~l~~l~l~~n~l~~~~~~~~~~~l~   87 (157)
                      ..+|..+..|+.+ -.+.........+..++.|+.+.+..+ ++.       ...+|+.+.+..+ +.            
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~------------  323 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-IT------------  323 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC------------
T ss_pred             cceeeecccccEEecccccceecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-cc------------
Confidence            3456677777777 333334445566777888888887533 221       0115555555433 11            


Q ss_pred             cccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcc
Q 039394           88 ELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKL  138 (157)
Q Consensus        88 ~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l  138 (157)
                          ..-..+|..|.+|+.+.+..+ +...-..+|.+|.+|+.+++.++..
T Consensus       324 ----~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          324 ----QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             ----EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             ----EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence                123456788888988888655 3433456788888999998887653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.57  E-value=0.00032  Score=47.45  Aligned_cols=18  Identities=22%  Similarity=0.267  Sum_probs=8.9

Q ss_pred             cccccCCCEEecCCCccC
Q 039394           98 IDQLTMLHALDLSRNQPI  115 (157)
Q Consensus        98 ~~~l~~L~~L~l~~N~l~  115 (157)
                      +..-+.|+.|+++.|.+.
T Consensus        94 L~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           94 IETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHCSSCCEEECCSSBCC
T ss_pred             HhcCCccCeEecCCCcCC
Confidence            333445555555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.31  E-value=0.011  Score=43.78  Aligned_cols=39  Identities=10%  Similarity=-0.017  Sum_probs=21.0

Q ss_pred             cccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccC
Q 039394           96 TKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSN  135 (157)
Q Consensus        96 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~  135 (157)
                      .+|..|.+|+.+.+..+ +...-..+|..|.+|+.+++..
T Consensus       337 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          337 RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            34555666666666554 3323344556666666666543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.30  E-value=0.016  Score=42.50  Aligned_cols=103  Identities=8%  Similarity=-0.006  Sum_probs=60.1

Q ss_pred             Ccchhcccccccc-ccccceeecCccCcCCCCCCEEEccCCcce------eecceeeeeecccccccceEEEceeeeecc
Q 039394           16 PHCSRYWQSLKVL-KSNHINGCVPIRLCYVRPVQVLDISYSSIL------GDIIIVSMIDLQMVQKKNSIAIINVVVVGE   88 (157)
Q Consensus        16 p~~~~~l~~L~~L-~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~------~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~   88 (157)
                      ..++..+..|+.+ -...+.......+..+.+++.+.+..+--.      ....+|+.+.+.++.+..            
T Consensus       233 ~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~------------  300 (379)
T 4h09_A          233 DGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIET------------  300 (379)
T ss_dssp             TTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCE------------
T ss_pred             cccccCCccceEEEcCCCccEeCccccceeehhccccccccceeccccccccccccccccccccccce------------
Confidence            3455666677766 333344445566777778888777543111      011256666665555442            


Q ss_pred             ccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccC
Q 039394           89 LFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSN  135 (157)
Q Consensus        89 ~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~  135 (157)
                          .-..+|..|.+|+.+.+..+ +...-..+|.+|.+|+.+.+..
T Consensus       301 ----I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          301 ----LEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             ----ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             ----ehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence                23456777888888888654 3323345677788888777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.72  E-value=0.0028  Score=42.83  Aligned_cols=90  Identities=6%  Similarity=0.023  Sum_probs=60.8

Q ss_pred             CccCcCCCCCCEEEccCCcceeec-----------ceeeeeecccccccceEEEceeeeeccccccccccccccccCCCE
Q 039394           38 PIRLCYVRPVQVLDISYSSILGDI-----------IIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHA  106 (157)
Q Consensus        38 p~~~~~l~~L~~L~l~~n~~~~~~-----------~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~  106 (157)
                      -..+..-+.|+.|++++|.+...-           ..++.|+++.|.+.+..            ...+...+..-+.|++
T Consensus        63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G------------a~ala~aL~~N~tL~~  130 (197)
T 1pgv_A           63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL------------LARLLRSTLVTQSIVE  130 (197)
T ss_dssp             HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH------------HHHHHHHTTTTCCCSE
T ss_pred             HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH------------HHHHHHHHhhCCceeE
Confidence            334556678899999999886321           18889999999987421            0023345666678999


Q ss_pred             EecCCCc---cCC----CCChhhhcCCCCCeEEccCCcce
Q 039394          107 LDLSRNQ---PIG----KIPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus       107 L~l~~N~---l~~----~~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                      |++++|.   +..    .+.+.+..-+.|..|+++.|.+.
T Consensus       131 L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          131 FKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             EECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             EECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            9998653   222    24455666788999999988754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.56  E-value=0.017  Score=36.12  Aligned_cols=53  Identities=13%  Similarity=0.169  Sum_probs=33.4

Q ss_pred             EEECcCCccc-cccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcc
Q 039394            3 YLDLSDNQLS-EEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSI   57 (157)
Q Consensus         3 ~L~L~~n~l~-~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~   57 (157)
                      .++.++++++ ..+|..+.  .++++|  .+|.+....+..|..+++|+.|++++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4566677765 24454332  346666  67777755556667777777777777755

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.25  E-value=0.044  Score=40.51  Aligned_cols=102  Identities=14%  Similarity=0.069  Sum_probs=61.4

Q ss_pred             Ccchhcccccccc-ccccceeecCccCcCCCCCCEEEccCCccee-------ecceeeeeecccccccceEEEceeeeec
Q 039394           16 PHCSRYWQSLKVL-KSNHINGCVPIRLCYVRPVQVLDISYSSILG-------DIIIVSMIDLQMVQKKNSIAIINVVVVG   87 (157)
Q Consensus        16 p~~~~~l~~L~~L-~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-------~~~~l~~l~l~~n~l~~~~~~~~~~~l~   87 (157)
                      ..+|..+..|+.+ -.+.+.......|..+++|+.+++..+ ++.       ...+|+.+.+..+ +.            
T Consensus       281 ~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~------------  346 (394)
T 4gt6_A          281 TGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT------------  346 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC------------
T ss_pred             CcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC------------
Confidence            4567778888888 556666566678888999999998654 221       1115555555433 22            


Q ss_pred             cccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcc
Q 039394           88 ELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKL  138 (157)
Q Consensus        88 ~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l  138 (157)
                          ..-..+|..|++|+.+++.++...   ...+..+..|+.+.+..|.+
T Consensus       347 ----~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          347 ----KIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             ----BCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             ----EEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence                123457899999999999988633   24566778888888776643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.10  E-value=0.25  Score=36.12  Aligned_cols=102  Identities=9%  Similarity=0.017  Sum_probs=65.5

Q ss_pred             cchhcccccccc-ccccceeecCccCcCCCCCCEEEccCCccee-------ecceeeeeecccccccceEEEceeeeecc
Q 039394           17 HCSRYWQSLKVL-KSNHINGCVPIRLCYVRPVQVLDISYSSILG-------DIIIVSMIDLQMVQKKNSIAIINVVVVGE   88 (157)
Q Consensus        17 ~~~~~l~~L~~L-~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-------~~~~l~~l~l~~n~l~~~~~~~~~~~l~~   88 (157)
                      ..+..+.+++.. ....+.......+..+..|+.+.+..+ ++.       ...+++.+.+..+ +.             
T Consensus       211 ~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-------------  275 (379)
T 4h09_A          211 YGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-------------  275 (379)
T ss_dssp             TTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-------------
T ss_pred             cccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-------------
Confidence            445556666666 444445455667788889999988655 221       0113444443322 11             


Q ss_pred             ccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCC
Q 039394           89 LFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNN  136 (157)
Q Consensus        89 ~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N  136 (157)
                         ..-...+..+.+|+.+.+..+.+...-..+|..|.+|+.+.+..+
T Consensus       276 ---~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          276 ---TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             ---EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             ---eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence               122346788999999999988876555678999999999999754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.10  E-value=0.035  Score=41.04  Aligned_cols=94  Identities=9%  Similarity=0.012  Sum_probs=58.1

Q ss_pred             cchhcccccccc-ccccceeecCccCcCCCCCCEEEccCCccee----e---cceeeeeecccccccceEEEceeeeecc
Q 039394           17 HCSRYWQSLKVL-KSNHINGCVPIRLCYVRPVQVLDISYSSILG----D---IIIVSMIDLQMVQKKNSIAIINVVVVGE   88 (157)
Q Consensus        17 ~~~~~l~~L~~L-~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~----~---~~~l~~l~l~~n~l~~~~~~~~~~~l~~   88 (157)
                      ..|..+.+|+.+ ..+.+......+|..+++|+.+++..+ ++.    .   ..+|+.+.+..+ +..            
T Consensus       291 ~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~------------  356 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK------------  356 (394)
T ss_dssp             TTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE------------
T ss_pred             ccccccccccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE------------
Confidence            456677778777 444455555667888888888888644 321    0   115555555443 221            


Q ss_pred             ccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCe
Q 039394           89 LFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGV  130 (157)
Q Consensus        89 ~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~  130 (157)
                          .-..+|..|.+|+.+++..+- . .+...|.++.+|+.
T Consensus       357 ----I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          357 ----IGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKW  392 (394)
T ss_dssp             ----ECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEE
T ss_pred             ----ehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcE
Confidence                234578899999999987652 2 33456777776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	157
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.0 bits (141), Expect = 1e-11
 Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 8/156 (5%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGD 60
           +  +    N++S  IP     +  L    +   N            + +  +  S  + +
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210

Query: 61  IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPE 120
                +       +K  +A                 K+     L+ LDL  N+  G +P+
Sbjct: 211 GDASVLFGSDKNTQKIHLAKN--------SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262

Query: 121 GISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASSY 156
           G++QL  L  L++S N L G+IP G  LQ  D S+Y
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.1 bits (105), Expect = 7e-07
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 90  FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP 143
               +P  + QL  LH+L++S N   G+IP+G   L    V + +NNK     P
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 5e-08
 Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 15/166 (9%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGD 60
           ++ L L+ NQL +     S    +   L +N I+   P  L  +  +  L +  + I   
Sbjct: 221 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 278

Query: 61  IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPI---------PTKIDQLTMLHALDLSR 111
             +  +  L  ++   +       +        +          + +  LT L  L  + 
Sbjct: 279 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFAN 338

Query: 112 NQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--TKLQTLDASS 155
           N+        ++ L  +  LS  +N++S   P    T++  L  + 
Sbjct: 339 NKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 15/166 (9%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGD 60
           +E L  ++NQ+S+  P           L  N +       L  +  +  LD++ + I   
Sbjct: 199 LESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 256

Query: 61  IIIVSM-----IDLQMVQKKNSIAIINVVVVGELFK----RPIPTKIDQLTMLHALDLSR 111
             +  +     + L   Q  N   +  +  +  L          + I  L  L  L L  
Sbjct: 257 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 316

Query: 112 NQPIGKIPEGISQLGLLGVLSLSNNKLSG--KIPSGTKLQTLDASS 155
           N      P  +S L  L  L  +NNK+S    + + T +  L A  
Sbjct: 317 NNISDISP--VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGH 360

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 6e-05
 Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 19/137 (13%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGD 60
           +  L L  NQ+S   P       +   L  N +    PI       +  L + +++I   
Sbjct: 265 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK--NLTYLTLYFNNISDI 322

Query: 61  IIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP 119
             + S+  LQ +    N ++                + +  LT ++ L    NQ     P
Sbjct: 323 SPVSSLTKLQRLFFANNKVSD--------------VSSLANLTNINWLSAGHNQISDLTP 368

Query: 120 EGISQLGLLGVLSLSNN 136
             ++ L  +  L L++ 
Sbjct: 369 --LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 98  IDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--TKLQTLDASS 155
              L  +  L   R   I  I +G+  L  L  ++ SNN+L+   P    TKL  +  ++
Sbjct: 40  QTDLDQVTTLQADRLG-IKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNN 97

Query: 156 YM 157
             
Sbjct: 98  NQ 99

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL 58
              LDL +N+++E      +  ++L  L   +N I+   P     +  ++ L +S + + 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 59  GDIIIVSMIDLQMVQKKNSIAIINVVVVGEL--------------FKRPIPTKIDQLTML 104
                +     ++   +N I  +   V   L                         +  L
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 105 HALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPS 144
             + ++    I  IP+G+     L  L L  NK++    +
Sbjct: 153 SYIRIADTN-ITTIPQGL--PPSLTELHLDGNKITKVDAA 189

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 21/154 (13%), Positives = 46/154 (29%), Gaps = 20/154 (12%)

Query: 1   MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGD 60
           + Y+ ++D  ++            L  L  N I       L  +  +  L +S++SI   
Sbjct: 152 LSYIRIADTNITTIPQGLPPSLTELH-LDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 210

Query: 61  IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPE 120
                     + +   +   +            +P  +     +  + L  N  I  I  
Sbjct: 211 DNGSLANTPHLRELHLNNNKLV----------KVPGGLADHKYIQVVYLHNNN-ISAIGS 259

Query: 121 G-------ISQLGLLGVLSLSNNKLS-GKIPSGT 146
                    ++      +SL +N +   +I   T
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 293

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 98  IDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDASS 155
            D    L  L++S N+ + ++P    +L     L  S N L+        L+ L    
Sbjct: 280 CDLPPSLEELNVSNNK-LIELPALPPRLE---RLIASFNHLAEVPELPQNLKQLHVEY 333

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 6e-04
 Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 1/45 (2%)

Query: 94  IPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKL 138
               ++ L  L  L L  N     IP+G     LL    L  N  
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 25/172 (14%), Positives = 47/172 (27%), Gaps = 19/172 (11%)

Query: 2   EYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGDI 61
             L LS+N L          +  L  L  +            +  +  LD+S++ +    
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP 93

Query: 62  IIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALD------------- 108
           ++   +    V   +   + ++ +        +     +   L  L              
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153

Query: 109 -LSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASS 155
            L+ N         ++ L  L  L L  N L   IP G      L       
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	157
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.81
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.75
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.71
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.67
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.66
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.61
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.59
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.48
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.46
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.44
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.43
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.42
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.33
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.32
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.31
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.23
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.13
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.11
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.03
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.02
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.72
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.61
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.58
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.54
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.39
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.22
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.83
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.38
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.93
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.89

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.81  E-value=3.7e-20  Score=132.79  Aligned_cols=60  Identities=33%  Similarity=0.565  Sum_probs=51.3

Q ss_pred             cccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCCC---CcccccCCC
Q 039394           96 TKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGT---KLQTLDASS  155 (157)
Q Consensus        96 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~---~l~~l~~~~  155 (157)
                      ..+..+++++.|++++|++.|.+|++++.+++|++|++++|.++|.+|+..   .++.++++.
T Consensus       238 ~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~  300 (313)
T d1ogqa_         238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN  300 (313)
T ss_dssp             GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS
T ss_pred             cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCC
Confidence            356778899999999999999999999999999999999999999999874   444455543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.8e-18  Score=118.88  Aligned_cols=153  Identities=20%  Similarity=0.168  Sum_probs=109.7

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee------cceeeeeecccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD------IIIVSMIDLQMV   72 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~------~~~l~~l~l~~n   72 (157)
                      +++|+|++|.+++..+.+|..+++|++|  ..|.++. +|. +..+++|++|++++|++++.      +++++.+++++|
T Consensus        33 l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~  110 (266)
T d1p9ag_          33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN  110 (266)
T ss_dssp             CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred             CCEEECcCCcCCCcCHHHhhccccccccccccccccc-ccc-cccccccccccccccccccccccccccccccccccccc
Confidence            4678888888875555667778888888  6676663 333 46778888888888877532      237777788777


Q ss_pred             cccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCC
Q 039394           73 QKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPS  144 (157)
Q Consensus        73 ~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~  144 (157)
                      .+....  .+..+..+.++      +....+..+..++.++.+++++|++.+..++.+..+++|++|++++|.|+ .+|+
T Consensus       111 ~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~  189 (266)
T d1p9ag_         111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK  189 (266)
T ss_dssp             CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             ccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccCh
Confidence            776644  22333333333      34344555677889999999999999877888999999999999999998 6776


Q ss_pred             C----CCcccccCCCC
Q 039394          145 G----TKLQTLDASSY  156 (157)
Q Consensus       145 ~----~~l~~l~~~~~  156 (157)
                      .    +.++.++++.+
T Consensus       190 ~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         190 GFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             TTTTTCCCSEEECCSC
T ss_pred             hHCCCCCCCEEEecCC
Confidence            5    77788887654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.71  E-value=2.5e-17  Score=117.84  Aligned_cols=128  Identities=26%  Similarity=0.418  Sum_probs=103.4

Q ss_pred             cEEECcCCcccc--ccCcchhcccccccc--c-cccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeec
Q 039394            2 EYLDLSDNQLSE--EIPHCSRYWQSLKVL--K-SNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDL   69 (157)
Q Consensus         2 ~~L~L~~n~l~~--~~p~~~~~l~~L~~L--~-~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l   69 (157)
                      +.|+|+++++.+  .+|+.++.+++|++|  . .|.+.|.+|+.++++++|++|++++|++.+..+       .++.+++
T Consensus        53 ~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l  132 (313)
T d1ogqa_          53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF  132 (313)
T ss_dssp             EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred             EEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccc
Confidence            578999999987  578999999999999  4 488999999999999999999999999987655       6888899


Q ss_pred             ccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCC-CeEEccCCcceecCCCC
Q 039394           70 QMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLL-GVLSLSNNKLSGKIPSG  145 (157)
Q Consensus        70 ~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L-~~L~ls~N~l~~~~p~~  145 (157)
                      +.|.+..                .+|.++..++.++.+++++|.+.+.+|+.+..+..+ +.++++.|.+++..|..
T Consensus       133 ~~N~~~~----------------~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~  193 (313)
T d1ogqa_         133 SYNALSG----------------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             CSSEEES----------------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             ccccccc----------------cCchhhccCcccceeecccccccccccccccccccccccccccccccccccccc
Confidence            9888764                466777777777777777777777777777766665 66777777777766654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3e-16  Score=109.95  Aligned_cols=152  Identities=17%  Similarity=0.118  Sum_probs=121.9

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----ecceeeeeecccccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQK   74 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~l   74 (157)
                      .+++.++++++ .+|+.+.  +++++|  ..|.+.+..+..|..+++|++|++++|+++.     .+++++.|++++|++
T Consensus        13 ~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l   89 (266)
T d1p9ag_          13 LEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL   89 (266)
T ss_dssp             CEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCC
T ss_pred             eEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            35788899998 6776654  578888  8899987777889999999999999999873     345999999999999


Q ss_pred             cceE-EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--
Q 039394           75 KNSI-AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--  145 (157)
Q Consensus        75 ~~~~-~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--  145 (157)
                      .... .+..+..++.+      +....+..+..+.+++.+++++|.+....+..+..++.++.+++++|.+++..+..  
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~  169 (266)
T d1p9ag_          90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN  169 (266)
T ss_dssp             SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred             cccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccc
Confidence            8766 45555555554      33445566778889999999999998777777888999999999999999776654  


Q ss_pred             --CCcccccCCCC
Q 039394          146 --TKLQTLDASSY  156 (157)
Q Consensus       146 --~~l~~l~~~~~  156 (157)
                        ++++.||++.+
T Consensus       170 ~l~~L~~L~Ls~N  182 (266)
T d1p9ag_         170 GLENLDTLLLQEN  182 (266)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             cccccceeecccC
Confidence              88889998875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.3e-16  Score=112.79  Aligned_cols=156  Identities=19%  Similarity=0.138  Sum_probs=108.2

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--cccccee-------------------------ecCccCcCCCCCCEEEcc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHING-------------------------CVPIRLCYVRPVQVLDIS   53 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~-------------------------~~p~~~~~l~~L~~L~l~   53 (157)
                      +++|+|++|.++...+.+|..+++|++|  .+|.+..                         ..+..+..+++|++|+++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence            4678999999885555678888888888  5554432                         225567778888888888


Q ss_pred             CCcceeecc-------eeeeeecccccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCC
Q 039394           54 YSSILGDII-------IVSMIDLQMVQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKI  118 (157)
Q Consensus        54 ~n~~~~~~~-------~l~~l~l~~n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~  118 (157)
                      +|.+....+       +++.+++++|.+.+..  .+..+..++.+      +....+.++..+++|+.+++++|++.+..
T Consensus       114 ~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~  193 (284)
T d1ozna_         114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH  193 (284)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccC
Confidence            887653222       7788888888887664  34444444443      44445566777788888888888877777


Q ss_pred             ChhhhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394          119 PEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY  156 (157)
Q Consensus       119 p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~  156 (157)
                      |..|..++++++|++++|.+.+..+..    ..++.++++.+
T Consensus       194 ~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             hhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            778888888888888888877654433    66777776653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=9.2e-16  Score=109.14  Aligned_cols=58  Identities=21%  Similarity=0.230  Sum_probs=49.8

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcce
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL   58 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~   58 (157)
                      +++|++++|+++...+.+|..+++|++|  ..|.+....|..|..+++|+++++++|+++
T Consensus        33 l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~   92 (305)
T d1xkua_          33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK   92 (305)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC
Confidence            5789999999995555678999999999  788888777888999999999999998764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=1.4e-15  Score=101.74  Aligned_cols=120  Identities=19%  Similarity=0.168  Sum_probs=95.6

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeec-CccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCV-PIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM   71 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~-p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~   71 (157)
                      ++++.++++++ .+|+.+.  .++++|  ..|.+.+.+ +..|..+++|++|++++|.+.+..+       +++.|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            46788888888 6776553  568888  788887543 5567889999999999998864332       888899999


Q ss_pred             ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394           72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus        72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                      |++..                ..|..|..+++|++|++++|++.+..+++|..+++|+++++++|++..
T Consensus        88 N~l~~----------------l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          88 NKIKE----------------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCE----------------ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccc----------------cCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            98873                245668889999999999999998778889999999999999998753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.2e-15  Score=106.33  Aligned_cols=151  Identities=15%  Similarity=0.084  Sum_probs=110.8

Q ss_pred             EEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc------------------
Q 039394            3 YLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII------------------   62 (157)
Q Consensus         3 ~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------------------   62 (157)
                      .++.++++++ .+|..+.  .++++|  ++|.+++..+..|..+++|+++++++|.+....+                  
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            4577778887 6776553  467888  8899987767789999999999999998753211                  


Q ss_pred             --------------eeeeeecccccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCCh
Q 039394           63 --------------IVSMIDLQMVQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPE  120 (157)
Q Consensus        63 --------------~l~~l~l~~n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  120 (157)
                                    +++.+++++|.+....  .+.....+..+      +.+..+..+..++.+++|++++|++.+..+.
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence                          6777777777776543  22222222222      4444456677888899999999998877778


Q ss_pred             hhhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394          121 GISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY  156 (157)
Q Consensus       121 ~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~  156 (157)
                      ++..+++|+.+++++|.+++..|..    ++++.+|++.+
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N  211 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             hhccccccchhhhhhccccccChhHhhhhhhccccccccc
Confidence            8888999999999999988877766    67778887764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=9.4e-15  Score=91.19  Aligned_cols=102  Identities=21%  Similarity=0.238  Sum_probs=84.7

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceEE
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSIA   79 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~~   79 (157)
                      ++|++++|+++ .++ .+..+.+|++|  +.|.+. .+|+.++.+++|++|++++|.+++                    
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~--------------------   57 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN--------------------   57 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--------------------
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc--------------------
Confidence            57999999998 555 48889999999  888887 577789999999999999999873                    


Q ss_pred             EceeeeeccccccccccccccccCCCEEecCCCccCCCC-ChhhhcCCCCCeEEccCCcceec
Q 039394           80 IINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI-PEGISQLGLLGVLSLSNNKLSGK  141 (157)
Q Consensus        80 ~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~  141 (157)
                                    +| .+..+++|+++++++|++.... ...+..+++|+.+++++|+++..
T Consensus        58 --------------l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          58 --------------VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             --------------CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             --------------cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence                          44 4788889999999999987433 35688899999999999998753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=5e-15  Score=99.01  Aligned_cols=109  Identities=17%  Similarity=0.162  Sum_probs=91.0

Q ss_pred             ccccceeecCccCcCCCCCCEEEccCCcceeec--------ceeeeeecccccccceEEEceeeeecccccccccccccc
Q 039394           29 KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI--------IIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQ  100 (157)
Q Consensus        29 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~--------~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~  100 (157)
                      +++.++ .+|..+  .+.+++|++++|.|++..        ++|+.|++++|.+..                ..+..+..
T Consensus        16 s~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~----------------~~~~~~~~   76 (192)
T d1w8aa_          16 TGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG----------------IEPNAFEG   76 (192)
T ss_dssp             TTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC----------------BCTTTTTT
T ss_pred             eCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccc----------------cccccccc
Confidence            566666 567665  368999999999996433        388999999999974                46677888


Q ss_pred             ccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394          101 LTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY  156 (157)
Q Consensus       101 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~  156 (157)
                      ++.|++|++++|++....|++|..+++|++|++++|.|++..|..    ++++.++++.+
T Consensus        77 ~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             ccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence            999999999999999878888999999999999999999877765    78888888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=3.5e-14  Score=96.08  Aligned_cols=148  Identities=18%  Similarity=0.228  Sum_probs=104.6

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-----cceeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~   73 (157)
                      |++|++++|.++. ++ .+..+++|++|  .+|.+.+ ++ .++.+++|++|++++|++++.     +++++.+++++|.
T Consensus        48 L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          48 IDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSC
T ss_pred             ccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccccccccccccccccccccccc
Confidence            5678888888874 33 47788889988  7777775 33 357888999999999987632     3378888888887


Q ss_pred             ccceEEEceeeeeccc-ccc---ccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC---C
Q 039394           74 KKNSIAIINVVVVGEL-FKR---PIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG---T  146 (157)
Q Consensus        74 l~~~~~~~~~~~l~~~-~~~---~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~---~  146 (157)
                      +.....+..+..++.+ +..   ..+..+..+++|+++++++|++.+ ++ .+..+++|+.|++++|.++. +|..   +
T Consensus       124 ~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~~l~~l~  200 (210)
T d1h6ta2         124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LRALAGLK  200 (210)
T ss_dssp             CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CGGGTTCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC-ChhhcCCC
Confidence            7654433333333333 110   123456778999999999999874 44 37899999999999999874 4422   7


Q ss_pred             CcccccCCC
Q 039394          147 KLQTLDASS  155 (157)
Q Consensus       147 ~l~~l~~~~  155 (157)
                      +|+.|++++
T Consensus       201 ~L~~L~Ls~  209 (210)
T d1h6ta2         201 NLDVLELFS  209 (210)
T ss_dssp             TCSEEEEEE
T ss_pred             CCCEEEccC
Confidence            888888753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.3e-13  Score=89.76  Aligned_cols=55  Identities=16%  Similarity=0.228  Sum_probs=34.6

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcce
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL   58 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~   58 (157)
                      +++|+|++|+++ .++..+..+++|++|  ++|.+.. ++ .+..+++|++|++++|.++
T Consensus        20 lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~   76 (162)
T d1a9na_          20 DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRIC   76 (162)
T ss_dssp             CEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCC
T ss_pred             CcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhccccccc
Confidence            356777777776 445555566667777  6666653 32 3566677777777777665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=6.6e-14  Score=101.70  Aligned_cols=57  Identities=23%  Similarity=0.343  Sum_probs=48.0

Q ss_pred             cccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--CCcccccCCCC
Q 039394           98 IDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--TKLQTLDASSY  156 (157)
Q Consensus        98 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--~~l~~l~~~~~  156 (157)
                      +..+++|+.|++++|++. .++ .+..+++|++|++++|++++..|-.  ++|+.|+++.+
T Consensus       325 l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         325 VSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCE
T ss_pred             cccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCCC
Confidence            788899999999999987 454 6889999999999999998765544  78999998765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.46  E-value=2.1e-13  Score=96.77  Aligned_cols=138  Identities=18%  Similarity=0.231  Sum_probs=82.9

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCc---------------------------------------
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPI---------------------------------------   39 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~---------------------------------------   39 (157)
                      |++|++++|.+....|..|..++.|++|  .+|.+.. +|.                                       
T Consensus        57 L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~  135 (305)
T d1xkua_          57 LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP  135 (305)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccchhhhhCCCccCEecccCCccCc-Cccchhhhhhhhhccccchhhhhhhhhhcccccccccccccc
Confidence            5677888888776556677777777777  5555442 222                                       


Q ss_pred             ---------cCcCCCCCCEEEccCCccee----ecceeeeeecccccccceE--EEceeeeeccc------ccccccccc
Q 039394           40 ---------RLCYVRPVQVLDISYSSILG----DIIIVSMIDLQMVQKKNSI--AIINVVVVGEL------FKRPIPTKI   98 (157)
Q Consensus        40 ---------~~~~l~~L~~L~l~~n~~~~----~~~~l~~l~l~~n~l~~~~--~~~~~~~l~~~------~~~~~p~~~   98 (157)
                               .+..+++|+++++++|.+..    ..++++.+++++|......  .+..+..++.+      +.+..+..+
T Consensus       136 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~  215 (305)
T d1xkua_         136 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL  215 (305)
T ss_dssp             CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred             ccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccc
Confidence                     22333444444444444321    1124555555555544332  22222222222      444556677


Q ss_pred             ccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394           99 DQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus        99 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                      ..+++|++|++++|++. .+|+.+..+++|++|++++|+|+.
T Consensus       216 ~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         216 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             cccccceeeeccccccc-ccccccccccCCCEEECCCCccCc
Confidence            77888888888888877 677788888888888888888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=3.8e-13  Score=90.11  Aligned_cols=134  Identities=19%  Similarity=0.223  Sum_probs=84.4

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----ecceeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~   73 (157)
                      +++|++++|.++ .++ .+..+++|++|  .+|.+.+. ++ ++.+++|++|++++|.+..     .++.++.++++++.
T Consensus        42 l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~  117 (199)
T d2omxa2          42 VTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ  117 (199)
T ss_dssp             CCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred             CCEEECCCCCCC-Ccc-ccccCCCcCcCccccccccCc-cc-ccCCcccccccccccccccccccccccccccccccccc
Confidence            467788888877 333 46777788888  66666643 32 6778888888888876652     22366777777776


Q ss_pred             ccceEEEceeeeeccc-ccc---ccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394           74 KKNSIAIINVVVVGEL-FKR---PIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus        74 l~~~~~~~~~~~l~~~-~~~---~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                      ......+..+..++.+ +.+   .....+..+++++.+++.+|++.+ ++ .++.+++|+.|++++|+++.
T Consensus       118 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         118 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccchhhhhHHhhhhhhhhcccccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCC
Confidence            6543322223333332 110   112246777788888888888764 33 36778888888888888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=9.3e-13  Score=88.19  Aligned_cols=145  Identities=21%  Similarity=0.241  Sum_probs=104.7

Q ss_pred             CcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-----cceeeeeecccccccceE
Q 039394            6 LSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQKKNSI   78 (157)
Q Consensus         6 L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~l~~~~   78 (157)
                      ++.+.+++.++  ...+.+++.|  .++.+.. + +.+..+++|++|++++|++++.     +++++.+++++|.+....
T Consensus        25 l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~  100 (199)
T d2omxa2          25 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT  100 (199)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             hCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCcccccCCccccccccccccccccc
Confidence            45555554433  3567888888  6776663 3 3478899999999999998753     348999999999887665


Q ss_pred             EEceeeeeccc-cc---cccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--CCccccc
Q 039394           79 AIINVVVVGEL-FK---RPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--TKLQTLD  152 (157)
Q Consensus        79 ~~~~~~~l~~~-~~---~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--~~l~~l~  152 (157)
                      .+..+..++++ +.   ......+..+++|+.+++++|++. .+ +.+..+++++.|++.+|.+++..+-.  ++++.|+
T Consensus       101 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~  178 (199)
T d2omxa2         101 PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLD  178 (199)
T ss_dssp             GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred             ccccccccccccccccccccccccchhhhhHHhhhhhhhhc-cc-ccccccccccccccccccccCCccccCCCCCCEEE
Confidence            44455555544 11   112234778899999999999976 44 35788999999999999987643322  8888898


Q ss_pred             CCCC
Q 039394          153 ASSY  156 (157)
Q Consensus       153 ~~~~  156 (157)
                      ++.+
T Consensus       179 ls~N  182 (199)
T d2omxa2         179 ISSN  182 (199)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            8865

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=4e-13  Score=91.63  Aligned_cols=148  Identities=20%  Similarity=0.231  Sum_probs=91.3

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----ecceeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~   73 (157)
                      |+.|++.+|+++ .++ .+..+++|++|  .+|.+.+..  .+..+++++++++++|.++.     .++.++.+.++++.
T Consensus        43 L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~  118 (227)
T d1h6ua2          43 ITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ  118 (227)
T ss_dssp             CCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSC
T ss_pred             cCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccccccccccccccccccccc
Confidence            467778888777 343 46777777777  666665432  25677777777777776542     12255555555555


Q ss_pred             ccceE----------------------EEceeeeeccc-ccc---ccccccccccCCCEEecCCCccCCCCChhhhcCCC
Q 039394           74 KKNSI----------------------AIINVVVVGEL-FKR---PIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGL  127 (157)
Q Consensus        74 l~~~~----------------------~~~~~~~l~~~-~~~---~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~  127 (157)
                      ..+..                      .+..+..++++ +.+   .....+..+++|+.|++++|++.+ ++ .+..+++
T Consensus       119 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~  196 (227)
T d1h6ua2         119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-IS-PLASLPN  196 (227)
T ss_dssp             CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTT
T ss_pred             ccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCC-Ch-hhcCCCC
Confidence            44321                      11122222222 111   112346788899999999998774 44 3788999


Q ss_pred             CCeEEccCCcceecCCCC--CCcccccCC
Q 039394          128 LGVLSLSNNKLSGKIPSG--TKLQTLDAS  154 (157)
Q Consensus       128 L~~L~ls~N~l~~~~p~~--~~l~~l~~~  154 (157)
                      |++|++++|+++...|-.  +.|+.|+++
T Consensus       197 L~~L~Ls~N~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         197 LIEVHLKNNQISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             CCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred             CCEEECcCCcCCCCcccccCCCCCEEEee
Confidence            999999999988643322  777777764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=2.7e-12  Score=87.42  Aligned_cols=146  Identities=16%  Similarity=0.173  Sum_probs=102.5

Q ss_pred             ECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-----eeeeeecccccccce
Q 039394            5 DLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-----IVSMIDLQMVQKKNS   77 (157)
Q Consensus         5 ~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-----~l~~l~l~~n~l~~~   77 (157)
                      +++.+.+++.+  +.+.+.+|+.|  .+|.+.. ++ .+.++++|++|++++|.+++..+     .++.+++++|.+...
T Consensus        25 ~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i  100 (227)
T d1h6ua2          25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV  100 (227)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC
T ss_pred             HhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccccccccccccccccccccccc
Confidence            45556666443  45778899999  6777764 43 58899999999999999875433     888899999988765


Q ss_pred             EEEceeeeeccc------c-----------------cc---ccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeE
Q 039394           78 IAIINVVVVGEL------F-----------------KR---PIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVL  131 (157)
Q Consensus        78 ~~~~~~~~l~~~------~-----------------~~---~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L  131 (157)
                      ..+..+..++.+      .                 ..   .....+..+++++++++++|.+...  ..+..+++|+.|
T Consensus       101 ~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L  178 (227)
T d1h6ua2         101 SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTL  178 (227)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred             ccccccccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccc--hhhcccccceec
Confidence            433333333333      0                 00   1122356778899999999997643  237889999999


Q ss_pred             EccCCcceecCCC--CCCcccccCCCC
Q 039394          132 SLSNNKLSGKIPS--GTKLQTLDASSY  156 (157)
Q Consensus       132 ~ls~N~l~~~~p~--~~~l~~l~~~~~  156 (157)
                      ++++|.+.+..+-  .+.++.|+++.+
T Consensus       179 ~Ls~n~l~~l~~l~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         179 KADDNKISDISPLASLPNLIEVHLKNN  205 (227)
T ss_dssp             ECCSSCCCCCGGGGGCTTCCEEECTTS
T ss_pred             ccCCCccCCChhhcCCCCCCEEECcCC
Confidence            9999998763221  288888888765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.7e-12  Score=81.31  Aligned_cols=101  Identities=22%  Similarity=0.071  Sum_probs=73.7

Q ss_pred             EEECcCCccccccCcchhcccccccc--ccc-cceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceEE
Q 039394            3 YLDLSDNQLSEEIPHCSRYWQSLKVL--KSN-HINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSIA   79 (157)
Q Consensus         3 ~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n-~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~~   79 (157)
                      .++.+++++. ..|..+..+++++.|  .+| .+....++.|..+++|+.|++++|+++.                    
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~--------------------   70 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--------------------   70 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE--------------------
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCC--------------------
Confidence            4666777776 566677777777777  334 4666556678888888888888887763                    


Q ss_pred             EceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcc
Q 039394           80 IINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKL  138 (157)
Q Consensus        80 ~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l  138 (157)
                                   ..|.+|..+++|++|++++|++. .+|........++.|++++|++
T Consensus        71 -------------i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          71 -------------VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             -------------ECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred             -------------cccccccccccccceeccCCCCc-ccChhhhccccccccccCCCcc
Confidence                         34667888889999999999988 4544444445788999999987

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=4e-12  Score=78.98  Aligned_cols=62  Identities=26%  Similarity=0.346  Sum_probs=50.5

Q ss_pred             ccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCC-C----CCcccccCCCC
Q 039394           93 PIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPS-G----TKLQTLDASSY  156 (157)
Q Consensus        93 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-~----~~l~~l~~~~~  156 (157)
                      .+|..+..+++|+.|++++|++. .+| .+..+++|+++++++|.+...... .    ++++.++++.+
T Consensus        34 ~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          34 ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCC
Confidence            57888999999999999999988 455 489999999999999999743221 1    77888888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=3.2e-12  Score=86.24  Aligned_cols=127  Identities=20%  Similarity=0.243  Sum_probs=93.8

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----ecceeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~   73 (157)
                      |++|++++|.+++ ++ .++.+++|++|  .+|.+.+ +| .+..+++|+.+++++|.+..     .++.++.++++.|.
T Consensus        70 L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~  145 (210)
T d1h6ta2          70 VTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK  145 (210)
T ss_dssp             CCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-ccccccccccccccccccccccccccccccccccccccc
Confidence            6789999999985 44 36788999999  6777774 44 47889999999999987652     23477788888888


Q ss_pred             ccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccC
Q 039394           74 KKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSN  135 (157)
Q Consensus        74 l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~  135 (157)
                      +.+...+..+..++.+      +. .++ .+..+++|+.|++++|++. .++ .+..+++|++|++++
T Consensus       146 l~~~~~~~~l~~L~~l~l~~n~l~-~i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         146 ITDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCCCGGGGGCTTCSEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccccccccccccccccc-ccc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            7754433333333333      32 233 3788999999999999987 565 589999999999874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.28  E-value=8.1e-12  Score=90.47  Aligned_cols=146  Identities=24%  Similarity=0.224  Sum_probs=101.5

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-----ceeeeeecccccc
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-----IIVSMIDLQMVQK   74 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-----~~l~~l~l~~n~l   74 (157)
                      +.+++++|.+++..|  ...+++|+.|  .+|.+.. + +.+..+++++++++++|.+++..     ++++.++++++.+
T Consensus       200 ~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l  275 (384)
T d2omza2         200 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI  275 (384)
T ss_dssp             SEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC
T ss_pred             ceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCcccccccCCEeeccCccc
Confidence            567788888775433  4556778877  6666653 3 35677888888888888876432     3778888888877


Q ss_pred             cceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC---
Q 039394           75 KNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG---  145 (157)
Q Consensus        75 ~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~---  145 (157)
                      .+...+..+..+..+      +.  ....+..+.+++.+++++|++.+. + .+..+++|+.|++++|++++. +..   
T Consensus       276 ~~~~~~~~~~~l~~l~~~~n~l~--~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~l-~~l~~l  350 (384)
T d2omza2         276 SNISPLAGLTALTNLELNENQLE--DISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSDV-SSLANL  350 (384)
T ss_dssp             CCCGGGTTCTTCSEEECCSSCCS--CCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCCC-GGGGGC
T ss_pred             CCCCccccccccccccccccccc--cccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCCC-hhHcCC
Confidence            754422222222222      11  133578889999999999998854 3 378999999999999998753 322   


Q ss_pred             CCcccccCCCC
Q 039394          146 TKLQTLDASSY  156 (157)
Q Consensus       146 ~~l~~l~~~~~  156 (157)
                      +.|+.|+++.+
T Consensus       351 ~~L~~L~l~~N  361 (384)
T d2omza2         351 TNINWLSAGHN  361 (384)
T ss_dssp             TTCCEEECCSS
T ss_pred             CCCCEEECCCC
Confidence            88999998875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=2.6e-13  Score=91.07  Aligned_cols=110  Identities=18%  Similarity=0.184  Sum_probs=86.3

Q ss_pred             ccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec------ceeeeeecccccccceEEEceeee
Q 039394           14 EIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI------IIVSMIDLQMVQKKNSIAIINVVV   85 (157)
Q Consensus        14 ~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~------~~l~~l~l~~n~l~~~~~~~~~~~   85 (157)
                      .+|.++..+++|++|  ..|.+. .++ .+..+++|++|++++|.++..-      +.++.|++++|.+.          
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~----------  106 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA----------  106 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECC----------
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhccccccccccccccccccccccccccccc----------
Confidence            455678889999999  777777 444 4788999999999999886321      27889999999887          


Q ss_pred             eccccccccccccccccCCCEEecCCCccCCCCC--hhhhcCCCCCeEEccCCcceecCCC
Q 039394           86 VGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP--EGISQLGLLGVLSLSNNKLSGKIPS  144 (157)
Q Consensus        86 l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~~l~~L~~L~ls~N~l~~~~p~  144 (157)
                             .+ ..+..+++|+.|++++|++. .++  ..+..+++|+.|++++|++....+.
T Consensus       107 -------~l-~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         107 -------SL-SGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             -------CH-HHHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             -------cc-ccccccccccccccccchhc-cccccccccCCCccceeecCCCccccCccc
Confidence                   23 34778899999999999987 444  4688999999999999998765443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.8e-11  Score=83.82  Aligned_cols=151  Identities=12%  Similarity=0.060  Sum_probs=88.2

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeec-CccCcCCCCCCEEEccC-Cccee-------ecceeeeeec
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCV-PIRLCYVRPVQVLDISY-SSILG-------DIIIVSMIDL   69 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~-p~~~~~l~~L~~L~l~~-n~~~~-------~~~~l~~l~l   69 (157)
                      +++|++++|.++...+.+|..+++|++|  ..|.+...+ +..|..++.++++++.. |.+..       .+++++.+++
T Consensus        31 l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l  110 (242)
T d1xwdc1          31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI  110 (242)
T ss_dssp             CSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEE
T ss_pred             CCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccccc
Confidence            4678899998885445567888888888  666665433 44567777777777653 44432       2347777777


Q ss_pred             ccccccceEEEceeeeeccc----------------------------------cccccccccccccCCCEE-ecCCCcc
Q 039394           70 QMVQKKNSIAIINVVVVGEL----------------------------------FKRPIPTKIDQLTMLHAL-DLSRNQP  114 (157)
Q Consensus        70 ~~n~l~~~~~~~~~~~l~~~----------------------------------~~~~~p~~~~~l~~L~~L-~l~~N~l  114 (157)
                      ++|.+........+..++.+                                  +. .++........+..+ ++.+|++
T Consensus       111 ~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l  189 (242)
T d1xwdc1         111 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNL  189 (242)
T ss_dssp             ESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTC
T ss_pred             chhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-ccccccccchhhhcccccccccc
Confidence            77776543311111110000                                  11 122222223333334 4566776


Q ss_pred             CCCCChhhhcCCCCCeEEccCCcceecCCCC-----CCcccccC
Q 039394          115 IGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDA  153 (157)
Q Consensus       115 ~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-----~~l~~l~~  153 (157)
                      ....+..+..+++|++|++++|+++. +|..     ..++.+++
T Consensus       190 ~~l~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         190 EELPNDVFHGASGPVILDISRTRIHS-LPSYGLENLKKLRARST  232 (242)
T ss_dssp             CCCCTTTTTTSCCCSEEECTTSCCCC-CCSSSCTTCCEEESSSE
T ss_pred             ccccHHHhcCCCCCCEEECCCCcCCc-cCHHHHcCCcccccCcC
Confidence            64334567889999999999999884 4443     44444444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.6e-11  Score=78.63  Aligned_cols=97  Identities=20%  Similarity=0.196  Sum_probs=77.2

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceE
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSI   78 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~   78 (157)
                      |++|++++|.++ .++ .+..+++|++|  ++|.+....+..+..+++|++|++++|.+..                   
T Consensus        43 L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~-------------------  101 (162)
T d1a9na_          43 FDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-------------------  101 (162)
T ss_dssp             CSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-------------------
T ss_pred             CCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceeccccccc-------------------
Confidence            688999999998 454 58889999999  8888886555556779999999999998862                   


Q ss_pred             EEceeeeeccccccccc--cccccccCCCEEecCCCccCCCCCh----hhhcCCCCCeEEcc
Q 039394           79 AIINVVVVGELFKRPIP--TKIDQLTMLHALDLSRNQPIGKIPE----GISQLGLLGVLSLS  134 (157)
Q Consensus        79 ~~~~~~~l~~~~~~~~p--~~~~~l~~L~~L~l~~N~l~~~~p~----~~~~l~~L~~L~ls  134 (157)
                                     ++  ..+..+++|+++++++|.+. ..|.    .+..+++|+.||-.
T Consensus       102 ---------------~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_         102 ---------------LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             ---------------GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTE
T ss_pred             ---------------cccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCCC
Confidence                           22  34678899999999999986 4443    57889999988743

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.13  E-value=9.6e-13  Score=88.23  Aligned_cols=112  Identities=22%  Similarity=0.216  Sum_probs=89.0

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-----cceeeeeeccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQ   73 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~   73 (157)
                      |++|++++|+++ .++ .+..+++|++|  ..|.+. .+|.....+++|++|++++|.++..     +++++.|++++|.
T Consensus        50 L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~~N~  126 (198)
T d1m9la_          50 CKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             CCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEESEEE
T ss_pred             cceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccccccccccccccccccccch
Confidence            679999999998 555 58899999999  778776 4566555677899999999998742     2389999999999


Q ss_pred             ccceEEEceeeeeccccccccc--cccccccCCCEEecCCCccCCCCCh----------hhhcCCCCCeEE
Q 039394           74 KKNSIAIINVVVVGELFKRPIP--TKIDQLTMLHALDLSRNQPIGKIPE----------GISQLGLLGVLS  132 (157)
Q Consensus        74 l~~~~~~~~~~~l~~~~~~~~p--~~~~~l~~L~~L~l~~N~l~~~~p~----------~~~~l~~L~~L~  132 (157)
                      +..                 ++  ..+..+++|+.|++++|.+....+.          .+..+++|+.||
T Consensus       127 i~~-----------------~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         127 ITN-----------------WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CCC-----------------HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             hcc-----------------ccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            973                 33  3578899999999999987653332          266789999987

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.1e-10  Score=79.82  Aligned_cols=150  Identities=18%  Similarity=0.076  Sum_probs=88.5

Q ss_pred             cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc--------eeeeeecc-
Q 039394            2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII--------IVSMIDLQ-   70 (157)
Q Consensus         2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~--------~l~~l~l~-   70 (157)
                      +.++.++.+++ .+|+.+.  .++++|  .+|.+....+..|..+++|++|++++|.+...++        .++.+.+. 
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            35677777787 6776553  478888  7888886666678999999999999998764432        55666654 


Q ss_pred             cccccceE--EEceeeeeccc------cccccc-------------------------cccccc-cCCCEEecCCCccCC
Q 039394           71 MVQKKNSI--AIINVVVVGEL------FKRPIP-------------------------TKIDQL-TMLHALDLSRNQPIG  116 (157)
Q Consensus        71 ~n~l~~~~--~~~~~~~l~~~------~~~~~p-------------------------~~~~~l-~~L~~L~l~~N~l~~  116 (157)
                      .|.+....  .+..+..++++      +....+                         ..+..+ ..++.+++++|++..
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence            34555433  34555555544      111000                         011222 245556677777663


Q ss_pred             CCChhhhcCCCCCeE-EccCCcceecCCCC-----CCcccccCCCC
Q 039394          117 KIPEGISQLGLLGVL-SLSNNKLSGKIPSG-----TKLQTLDASSY  156 (157)
Q Consensus       117 ~~p~~~~~l~~L~~L-~ls~N~l~~~~p~~-----~~l~~l~~~~~  156 (157)
                       ++.......++..+ ++++|.+.. +|..     ++++.||++.+
T Consensus       168 -i~~~~~~~~~l~~~~~l~~n~l~~-l~~~~f~~l~~L~~L~Ls~N  211 (242)
T d1xwdc1         168 -IHNCAFNGTQLDELNLSDNNNLEE-LPNDVFHGASGPVILDISRT  211 (242)
T ss_dssp             -ECTTTTTTCCEEEEECTTCTTCCC-CCTTTTTTSCCCSEEECTTS
T ss_pred             -cccccccchhhhcccccccccccc-ccHHHhcCCCCCCEEECCCC
Confidence             33333334454444 455666663 3332     67777777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=9.7e-10  Score=70.55  Aligned_cols=88  Identities=19%  Similarity=0.028  Sum_probs=68.2

Q ss_pred             ecCccCcCCCCCCEEEccCC-cceeecceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCcc
Q 039394           36 CVPIRLCYVRPVQVLDISYS-SILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQP  114 (157)
Q Consensus        36 ~~p~~~~~l~~L~~L~l~~n-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l  114 (157)
                      ..|..+..++++++|++++| .++.                                 ..+..|..+++|+.|++++|++
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~---------------------------------i~~~~f~~l~~L~~L~Ls~N~l   68 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQH---------------------------------LELRDLRGLGELRNLTIVKSGL   68 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCE---------------------------------ECGGGSCSCCCCSEEECCSSCC
T ss_pred             cCcccccCccccCeeecCCCccccc---------------------------------cCchhhccccccCcceeecccc
Confidence            45666777788888888655 3542                                 2355688899999999999999


Q ss_pred             CCCCChhhhcCCCCCeEEccCCcceecCCCC---CCcccccCCCC
Q 039394          115 IGKIPEGISQLGLLGVLSLSNNKLSGKIPSG---TKLQTLDASSY  156 (157)
Q Consensus       115 ~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~---~~l~~l~~~~~  156 (157)
                      ....+.+|..+++|++|++++|.+....+..   ..++.|+++.+
T Consensus        69 ~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          69 RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             CEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred             CCcccccccccccccceeccCCCCcccChhhhccccccccccCCC
Confidence            9777888999999999999999998443333   56777887754

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3.7e-11  Score=84.45  Aligned_cols=155  Identities=17%  Similarity=0.151  Sum_probs=104.0

Q ss_pred             CcEEECcCCccccc-cCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCC-cce--------eecceeeeee
Q 039394            1 MEYLDLSDNQLSEE-IPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYS-SIL--------GDIIIVSMID   68 (157)
Q Consensus         1 L~~L~L~~n~l~~~-~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n-~~~--------~~~~~l~~l~   68 (157)
                      |++||++++.++.. ++..+..+++|++|  .++.+.+..+..+..+++|++|+++++ .++        ...|+|+.|+
T Consensus        48 L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~  127 (284)
T d2astb2          48 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN  127 (284)
T ss_dssp             CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccc
Confidence            57899999988754 34556788999999  677777667778888999999999985 454        2346899999


Q ss_pred             ccccc-ccceE---EEce-eeeeccc-cc--------cccccccccccCCCEEecCCC-ccCCCCChhhhcCCCCCeEEc
Q 039394           69 LQMVQ-KKNSI---AIIN-VVVVGEL-FK--------RPIPTKIDQLTMLHALDLSRN-QPIGKIPEGISQLGLLGVLSL  133 (157)
Q Consensus        69 l~~n~-l~~~~---~~~~-~~~l~~~-~~--------~~~p~~~~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~l  133 (157)
                      ++++. +.+..   .+.. +..++.+ +.        ..+......+++|++|+++++ .+.+.....+..+++|++|++
T Consensus       128 ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L  207 (284)
T d2astb2         128 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL  207 (284)
T ss_dssp             CCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             cccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEEC
Confidence            98863 33211   1111 1222222 11        112233456789999999886 456567777888999999999


Q ss_pred             cCC-cceec----CCCCCCcccccCCC
Q 039394          134 SNN-KLSGK----IPSGTKLQTLDASS  155 (157)
Q Consensus       134 s~N-~l~~~----~p~~~~l~~l~~~~  155 (157)
                      +++ .++..    +...++++.|+++.
T Consensus       208 ~~C~~i~~~~l~~L~~~~~L~~L~l~~  234 (284)
T d2astb2         208 SRCYDIIPETLLELGEIPTLKTLQVFG  234 (284)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             CCCCCCChHHHHHHhcCCCCCEEeeeC
Confidence            985 55442    22227777777764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.87  E-value=1.9e-08  Score=71.27  Aligned_cols=52  Identities=27%  Similarity=0.284  Sum_probs=40.2

Q ss_pred             cccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC-CCcccccCCCC
Q 039394          100 QLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-TKLQTLDASSY  156 (157)
Q Consensus       100 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~l~~l~~~~~  156 (157)
                      .+++|++|++++|++. .+|..   +++|+.|++++|.++ .+|.. ..++.|+++.+
T Consensus       282 ~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~~~~L~~L~L~~N  334 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPELPQNLKQLHVEYN  334 (353)
T ss_dssp             CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSS
T ss_pred             cCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccccCCCCEEECcCC
Confidence            3568999999999987 67753   567888999988887 56655 67888888765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.72  E-value=4.1e-08  Score=69.55  Aligned_cols=89  Identities=18%  Similarity=0.313  Sum_probs=61.5

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee--ecc-eeeeeeccccccc
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG--DII-IVSMIDLQMVQKK   75 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~--~~~-~l~~l~l~~n~l~   75 (157)
                      ++.|+|++++++ .+|+.   .++|++|  ..|.++ .+|+.   +.+|+.|++++|.++.  .+| .++.|++++|.+.
T Consensus        40 l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~  111 (353)
T d1jl5a_          40 AHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE  111 (353)
T ss_dssp             CSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS
T ss_pred             CCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhhhhccccccccccccccc
Confidence            568999999998 67754   4678888  777777 56765   3578888888887762  233 6888999999887


Q ss_pred             ceEEEceeeeeccccccccccccccccCCCEEecCCCccC
Q 039394           76 NSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI  115 (157)
Q Consensus        76 ~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~  115 (157)
                      .                 +|. +..+++|+++++++|.+.
T Consensus       112 ~-----------------lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         112 K-----------------LPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             S-----------------CCC-CTTCTTCCEEECCSSCCS
T ss_pred             c-----------------ccc-hhhhccceeecccccccc
Confidence            4                 342 344555555555555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=5.5e-09  Score=73.14  Aligned_cols=136  Identities=18%  Similarity=0.147  Sum_probs=93.6

Q ss_pred             CcEEECcCCccccccCcchhcccccccc--cc-ccceee-cCccCcCCCCCCEEEccCC-ccee---------ecceeee
Q 039394            1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KS-NHINGC-VPIRLCYVRPVQVLDISYS-SILG---------DIIIVSM   66 (157)
Q Consensus         1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~-n~~~~~-~p~~~~~l~~L~~L~l~~n-~~~~---------~~~~l~~   66 (157)
                      |++|+++++.+.+..+..++.+++|++|  .+ +.++.. +......+++|++|+++++ .++.         ..+.++.
T Consensus        73 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~  152 (284)
T d2astb2          73 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ  152 (284)
T ss_dssp             CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred             cccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccch
Confidence            6789999999888778888888999999  44 344421 2222346789999999885 3431         1237888


Q ss_pred             eecccc--cccceE---EEceeeeeccc-------cccccccccccccCCCEEecCCC-ccCCCCChhhhcCCCCCeEEc
Q 039394           67 IDLQMV--QKKNSI---AIINVVVVGEL-------FKRPIPTKIDQLTMLHALDLSRN-QPIGKIPEGISQLGLLGVLSL  133 (157)
Q Consensus        67 l~l~~n--~l~~~~---~~~~~~~l~~~-------~~~~~p~~~~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~l  133 (157)
                      ++++++  .+.+..   ....++.++++       ++......+..+++|++|+++++ .+.......++.+++|+.|++
T Consensus       153 L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l  232 (284)
T d2astb2         153 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV  232 (284)
T ss_dssp             EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             hhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEee
Confidence            888764  233221   12233444444       44456667888999999999984 666666667889999999999


Q ss_pred             cCC
Q 039394          134 SNN  136 (157)
Q Consensus       134 s~N  136 (157)
                      +++
T Consensus       233 ~~~  235 (284)
T d2astb2         233 FGI  235 (284)
T ss_dssp             TTS
T ss_pred             eCC
Confidence            876

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.9e-09  Score=69.56  Aligned_cols=46  Identities=24%  Similarity=0.131  Sum_probs=24.2

Q ss_pred             cccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec
Q 039394           96 TKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK  141 (157)
Q Consensus        96 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  141 (157)
                      ..+..+++|+.|++++|.+....+-..-....++.+++++|++...
T Consensus        85 ~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          85 SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             THHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            3345566666666666665532221222334566666666666543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.54  E-value=7.9e-09  Score=73.90  Aligned_cols=42  Identities=24%  Similarity=0.193  Sum_probs=21.7

Q ss_pred             cccccCCCEEecCCCccCCC----CChhhhcCCCCCeEEccCCcce
Q 039394           98 IDQLTMLHALDLSRNQPIGK----IPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus        98 ~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                      +..+++|+.|++++|.+...    +...+..+++|++|++++|.++
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            44455566666666554321    2333445555666666665553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.2e-08  Score=73.15  Aligned_cols=58  Identities=14%  Similarity=0.153  Sum_probs=44.0

Q ss_pred             CcEEECcCCccccc-cCcchhcccccccc--cccccee----ecCccCcCCCCCCEEEccCCcce
Q 039394            1 MEYLDLSDNQLSEE-IPHCSRYWQSLKVL--KSNHING----CVPIRLCYVRPVQVLDISYSSIL   58 (157)
Q Consensus         1 L~~L~L~~n~l~~~-~p~~~~~l~~L~~L--~~n~~~~----~~p~~~~~l~~L~~L~l~~n~~~   58 (157)
                      |+.||++++++++. +.+-+..++++++|  .+|.++.    .+...+...++|++||+++|.++
T Consensus         4 l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1           4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred             CCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCC
Confidence            57899999999853 24445678888888  7776652    34455678899999999999875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=9.9e-08  Score=69.62  Aligned_cols=85  Identities=15%  Similarity=0.073  Sum_probs=51.5

Q ss_pred             CCCCCEEEccCCcceee-----------cceeeeeecccccccceEEEceeeeeccccccccccccc-cccCCCEEecCC
Q 039394           44 VRPVQVLDISYSSILGD-----------IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKID-QLTMLHALDLSR  111 (157)
Q Consensus        44 l~~L~~L~l~~n~~~~~-----------~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~-~l~~L~~L~l~~  111 (157)
                      .+.|+.++++++.+...           .++++.|++++|.+.+..            ...++..+. ..+.|++|++++
T Consensus       311 ~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g------------~~~l~~~l~~~~~~L~~L~Ls~  378 (460)
T d1z7xw1         311 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG------------VRELCQGLGQPGSVLRVLWLAD  378 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH------------HHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcc------------cchhhhhhhcccCCCCEEECCC
Confidence            34677777777765422           115777777777765210            001223332 345688888888


Q ss_pred             CccCCC----CChhhhcCCCCCeEEccCCccee
Q 039394          112 NQPIGK----IPEGISQLGLLGVLSLSNNKLSG  140 (157)
Q Consensus       112 N~l~~~----~p~~~~~l~~L~~L~ls~N~l~~  140 (157)
                      |.+...    +++.+..+++|++|++++|+++.
T Consensus       379 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         379 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            887642    44556667888888888888754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.21  E-value=3.1e-07  Score=65.38  Aligned_cols=38  Identities=26%  Similarity=0.230  Sum_probs=22.5

Q ss_pred             cCCCEEecCCCccCCC----CChhhh-cCCCCCeEEccCCcce
Q 039394          102 TMLHALDLSRNQPIGK----IPEGIS-QLGLLGVLSLSNNKLS  139 (157)
Q Consensus       102 ~~L~~L~l~~N~l~~~----~p~~~~-~l~~L~~L~ls~N~l~  139 (157)
                      ..|++|++++|.+...    +...+. .+++|+.|++++|.+.
T Consensus       273 ~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         273 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             CCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            4567777777776532    222232 4566777777777764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.5e-06  Score=55.46  Aligned_cols=80  Identities=14%  Similarity=0.000  Sum_probs=58.6

Q ss_pred             ecCccCcCCCCCCEEEccCCcceee---------cceeeeeecccccccceEEEceeeeecccccccccc-ccccccCCC
Q 039394           36 CVPIRLCYVRPVQVLDISYSSILGD---------IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPT-KIDQLTMLH  105 (157)
Q Consensus        36 ~~p~~~~~l~~L~~L~l~~n~~~~~---------~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~-~~~~l~~L~  105 (157)
                      .++.....+++|++|++++|+++..         +++++.|++++|.+.+                 ++. .......++
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-----------------l~~l~~l~~~~L~  118 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-----------------ERELDKIKGLKLE  118 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-----------------GGGHHHHTTCCCS
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-----------------chhhhhhhccccc
Confidence            3444445688999999999998732         3489999999999984                 332 223345689


Q ss_pred             EEecCCCccCCCCCh-------hhhcCCCCCeEE
Q 039394          106 ALDLSRNQPIGKIPE-------GISQLGLLGVLS  132 (157)
Q Consensus       106 ~L~l~~N~l~~~~p~-------~~~~l~~L~~L~  132 (157)
                      .+++++|.+......       .+..+++|+.||
T Consensus       119 ~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             eeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            999999998865442       356789999887

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.38  E-value=3.2e-05  Score=49.36  Aligned_cols=87  Identities=6%  Similarity=0.041  Sum_probs=54.6

Q ss_pred             cCcCCCCCCEEEccCCcceee-----------cceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEe
Q 039394           40 RLCYVRPVQVLDISYSSILGD-----------IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALD  108 (157)
Q Consensus        40 ~~~~l~~L~~L~l~~n~~~~~-----------~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~  108 (157)
                      .+...+.|+.|++++|.+...           .+.++.|++++|.+....            ...+...+...++|++|+
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g------------~~~l~~aL~~n~sL~~L~  106 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL------------LARLLRSTLVTQSIVEFK  106 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH------------HHHHHHHTTTTCCCSEEE
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHH------------HHHHHHHHHhCCcCCEEE
Confidence            455566777788877776521           126677777777765310            001233466677899999


Q ss_pred             cCCCccCCC-------CChhhhcCCCCCeEEccCCcc
Q 039394          109 LSRNQPIGK-------IPEGISQLGLLGVLSLSNNKL  138 (157)
Q Consensus       109 l~~N~l~~~-------~p~~~~~l~~L~~L~ls~N~l  138 (157)
                      +++|++...       +...+...++|+.|+++++..
T Consensus       107 l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         107 ADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             CCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            988865421       344556678888898887653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.93  E-value=0.00023  Score=45.12  Aligned_cols=85  Identities=12%  Similarity=0.064  Sum_probs=59.1

Q ss_pred             CCCCCCEEEccCC-cceee-----------cceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecC
Q 039394           43 YVRPVQVLDISYS-SILGD-----------IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLS  110 (157)
Q Consensus        43 ~l~~L~~L~l~~n-~~~~~-----------~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~  110 (157)
                      ..+.|++|+++++ .+...           .+.++.|++++|.+....            ...+...+...+.|++|+++
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~------------~~~la~~L~~n~~L~~L~L~   80 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSE------------ARGLIELIETSPSLRVLNVE   80 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHH------------HTTHHHHHHHCSSCCEEECC
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhH------------HHHHhhhhhhcccccceeee
Confidence            4578999999874 45421           127899999999886310            00233445667889999999


Q ss_pred             CCccCCC----CChhhhcCCCCCeEEccCCcce
Q 039394          111 RNQPIGK----IPEGISQLGLLGVLSLSNNKLS  139 (157)
Q Consensus       111 ~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~  139 (157)
                      +|.+...    +...+...++|++|++++|.+.
T Consensus        81 ~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          81 SNFLTPELLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             SSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             hhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence            9998753    3334666788999999988643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.07  E-value=0.00034  Score=44.15  Aligned_cols=107  Identities=10%  Similarity=-0.046  Sum_probs=63.2

Q ss_pred             hcccccccc--cc-cccee----ecCccCcCCCCCCEEEccCCcceee-----------cceeeeeecccccccceEEEc
Q 039394           20 RYWQSLKVL--KS-NHING----CVPIRLCYVRPVQVLDISYSSILGD-----------IIIVSMIDLQMVQKKNSIAII   81 (157)
Q Consensus        20 ~~l~~L~~L--~~-n~~~~----~~p~~~~~l~~L~~L~l~~n~~~~~-----------~~~l~~l~l~~n~l~~~~~~~   81 (157)
                      ...++|+.|  .+ +.+..    .+-..+...+.|++|++++|.+...           .++++.+++++|.+....   
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g---   90 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG---   90 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH---
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh---
Confidence            445666666  32 33332    2333455677888888888877521           126677777777765310   


Q ss_pred             eeeeeccccccccccccccccCCCEEec--CCCccCC----CCChhhhcCCCCCeEEccCCcc
Q 039394           82 NVVVVGELFKRPIPTKIDQLTMLHALDL--SRNQPIG----KIPEGISQLGLLGVLSLSNNKL  138 (157)
Q Consensus        82 ~~~~l~~~~~~~~p~~~~~l~~L~~L~l--~~N~l~~----~~p~~~~~l~~L~~L~ls~N~l  138 (157)
                               ...+...+...++|+.+++  ++|.+..    .+.+.+...+.++.|+++.+..
T Consensus        91 ---------~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          91 ---------ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             ---------HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             ---------HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence                     0023345666777876555  4566543    2445566788889998887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.89  E-value=0.015  Score=36.09  Aligned_cols=102  Identities=13%  Similarity=0.132  Sum_probs=65.2

Q ss_pred             CcCCCCCCEEEccC-Cccee-----------ecceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEe
Q 039394           41 LCYVRPVQVLDISY-SSILG-----------DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALD  108 (157)
Q Consensus        41 ~~~l~~L~~L~l~~-n~~~~-----------~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~  108 (157)
                      ....+.|++|++++ +.++.           ..+.++.|++++|.+....            ...+...+...+.++.++
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~------------~~~L~~~l~~~~~l~~l~   80 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV------------AFALAEMLKVNNTLKSLN   80 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH------------HHHHHHHHHHCSSCCEEE
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHH------------HHHHHHHHhhcccchhhh
Confidence            34568899999987 45642           2237889999999886321            001233456678899999


Q ss_pred             cCCCccCCC----CChhhhcCCCCCeEEcc--CCcceec----CCC----CCCcccccCC
Q 039394          109 LSRNQPIGK----IPEGISQLGLLGVLSLS--NNKLSGK----IPS----GTKLQTLDAS  154 (157)
Q Consensus       109 l~~N~l~~~----~p~~~~~l~~L~~L~ls--~N~l~~~----~p~----~~~l~~l~~~  154 (157)
                      +++|.+...    +.+.+...++++.++++  .|.+...    +..    .++++.|++.
T Consensus        81 l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~  140 (166)
T d1io0a_          81 VESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH  140 (166)
T ss_dssp             CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             hccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCc
Confidence            999987543    33556778889887665  4565331    111    1666666654