Citrus Sinensis ID: 039402
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1496 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LK64 | 1514 | ABC transporter C family | yes | no | 0.987 | 0.976 | 0.676 | 0.0 | |
| Q9LK62 | 1493 | ABC transporter C family | no | no | 0.984 | 0.986 | 0.619 | 0.0 | |
| Q8VZZ4 | 1466 | ABC transporter C family | no | no | 0.971 | 0.991 | 0.622 | 0.0 | |
| Q7GB25 | 1514 | ABC transporter C family | no | no | 0.909 | 0.898 | 0.527 | 0.0 | |
| Q9M1C7 | 1506 | ABC transporter C family | no | no | 0.951 | 0.944 | 0.505 | 0.0 | |
| Q7FB56 | 1053 | Putative ABC transporter | no | no | 0.697 | 0.990 | 0.558 | 0.0 | |
| Q7DM58 | 1516 | ABC transporter C family | no | no | 0.945 | 0.933 | 0.414 | 0.0 | |
| Q9LYS2 | 1453 | ABC transporter C family | no | no | 0.844 | 0.869 | 0.439 | 0.0 | |
| Q9LZJ5 | 1539 | ABC transporter C family | no | no | 0.901 | 0.875 | 0.418 | 0.0 | |
| Q8LGU1 | 1464 | ABC transporter C family | no | no | 0.834 | 0.853 | 0.447 | 0.0 |
| >sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1 | Back alignment and function desciption |
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Score = 2053 bits (5320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1008/1491 (67%), Positives = 1221/1491 (81%), Gaps = 13/1491 (0%)
Query: 7 FLLKPIFLRWFSCSLHLVLLVGLLVSWVWNKIKTGEGDHNRGSREMFKNKKALWYKLTLA 66
FLLKP+FLRW S LH VLL+ L SWV KI+ GD G E K+++ +K L
Sbjct: 31 FLLKPLFLRWLSGFLHSVLLLVLFFSWVRKKIR---GDS--GVTESLKDRRDFGFKSALF 85
Query: 67 CCFGVSLFNIVFSLLSYFYWYENGWSD-YQLVTLLDFGVKTLGWSAICVCLHTVFLNSRQ 125
C +SL N+V LS FYWYE+GW D QLV+ L F + + W + +CLH +
Sbjct: 86 CSLALSLLNLVLMSLSGFYWYESGWLDNEQLVSSLGFLLGMVSWGVLSICLHRC-RDCEH 144
Query: 126 PKLPILLKLWWAFYVFISCYCLIVDIVLCEKQVSLQIQYLISDVASAMTGLFLCFVGILS 185
K P LL+LW FY+ +SCY L+VD V+ E++ ++ + L+ D+ + + +FL +V +L
Sbjct: 145 KKAPFLLRLWLVFYLVVSCYSLVVDFVMYERRETVPVHLLVFDIVAFIAAVFLGYVAVLK 204
Query: 186 KIEGEDALLLREPLLKADSNET--DGTVPSIKSEGADKLTPYSRAGVLSVITYSWINSLI 243
K +L EPLL + D +V K+ G+ + TPYSRAG+LS++T+SW++ LI
Sbjct: 205 KDRSNSNGVLEEPLLNGGDSRVGGDDSVELNKTNGSGEATPYSRAGILSLLTFSWMSPLI 264
Query: 244 ALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLET-EGGVGSGLTTVKLIKAMFCSVWKD 302
+GNKKTLDLEDVPQL DSV G F++ LE+ +GG SG+TT KLIKA++ + +
Sbjct: 265 DIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLESPDGGERSGVTTFKLIKALYFTAQWE 324
Query: 303 VLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFR 362
+LVT F +YT+ASYVGP LIDTFVQYLNGRR + +EGYVLV F AK+VECL QR
Sbjct: 325 ILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYNHEGYVLVITFFAAKIVECLSQRHW 384
Query: 363 VFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDP 422
FRLQ++GIRMR+AL+AMIY KGLTLS Q+KQG++SGEIINFMTVDAER+ +FSWY+HDP
Sbjct: 385 FFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTSGEIINFMTVDAERIGNFSWYMHDP 444
Query: 423 WLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKA 482
W+VL +V L++ ILY+NLG+AS+AAL T+IVML+N P GR+QE FQ+KLM++KD RMK+
Sbjct: 445 WMVLLQVGLALWILYRNLGLASIAALVATIIVMLINFPFGRMQERFQEKLMEAKDSRMKS 504
Query: 483 TSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVAT 542
TSEILRNMRILKLQGWEMKFLSKI +LRK E GWLKKYVY SA+ SFVFWGAPT VSV+T
Sbjct: 505 TSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLKKYVYNSAVISFVFWGAPTLVSVST 564
Query: 543 FGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQ 602
FG CILL +PLESGK+LSA+ATFR+LQ PIYNLPD ISMI+QTKVSL R+AS+ CLD+LQ
Sbjct: 565 FGACILLGIPLESGKILSALATFRILQEPIYNLPDTISMIVQTKVSLDRLASYLCLDNLQ 624
Query: 603 PDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSL 662
PD+VE+ P GSS+ A+++++ SWD+SS NPTLKDIN KVF GM+VAVCGTVGSGKSSL
Sbjct: 625 PDIVERLPKGSSDVAVEVINSTLSWDVSSSNPTLKDINFKVFPGMKVAVCGTVGSGKSSL 684
Query: 663 LSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLK 722
LS +LGEVPK+SG+LK+CGTKAYVAQSPWIQSGKIEDNILFGK M RERY+ VL+ACSL
Sbjct: 685 LSSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGKIEDNILFGKPMERERYDKVLEACSLS 744
Query: 723 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLF 782
KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD+DIYLFDDPFSAVDAHTGSHLF
Sbjct: 745 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 804
Query: 783 QEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAH 842
+EVLLGLL SK+VIYVTHQVEFLPAADLILVMKDG+I+QAGKYND++NSGTDFMEL+GAH
Sbjct: 805 KEVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDGRISQAGKYNDILNSGTDFMELIGAH 864
Query: 843 EQALLALGSIEGRPASERASGENGGTVIANRIV--KEVENNKGQNDKADEVAVSKGQLVQ 900
++AL + S++ SE+++ ++ + I +++E+ +NDK + V + Q++Q
Sbjct: 865 QEALAVVDSVDANSVSEKSALGQENVIVKDAIAVDEKLESQDLKNDKLESVEPQR-QIIQ 923
Query: 901 EEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKP 960
EEEREKG V VYWKYIT A+GGALVPFILL Q LFQ+LQI SNYW+ WATP ++DV+
Sbjct: 924 EEEREKGSVALDVYWKYITLAYGGALVPFILLGQVLFQLLQIGSNYWMAWATPVSEDVQA 983
Query: 961 VVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATP 1020
V STL+IVYVALA GSS C+L R+TLL TAGYKTAT LF++MH+CIFR+PMSFFD+TP
Sbjct: 984 PVKLSTLMIVYVALAFGSSLCILLRATLLVTAGYKTATELFHKMHHCIFRSPMSFFDSTP 1043
Query: 1021 SGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIW 1080
SGRI++RASTDQSA DL +P G+ A ++I+++G I VMSQV+W VF+VF+P V + IW
Sbjct: 1044 SGRIMSRASTDQSAVDLELPYQFGSVAITVIQLIGIIGVMSQVSWLVFLVFIPVVAASIW 1103
Query: 1081 YQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRP 1140
YQ+YYI++ARELSRLVGVCKAP+IQHF+ET+SG+TTIRSF QE RFR NM+L D YSRP
Sbjct: 1104 YQRYYIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSRP 1163
Query: 1141 TFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATL 1200
F+ A AMEWL RLDMLSS+TF F+LVFL+SIP G IDP++AGLAVTYGL+LNTL A L
Sbjct: 1164 KFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDPSLAGLAVTYGLSLNTLQAWL 1223
Query: 1201 IWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMP 1260
IW C+LENKIISVERI QY +PSEPPL IE +RP SWPS G++++ DLQVRYAP MP
Sbjct: 1224 IWTLCNLENKIISVERILQYASVPSEPPLVIESNRPEQSWPSRGEVEIRDLQVRYAPHMP 1283
Query: 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1320
LVL+GI+CTF GG +TGIVGRTGSGKSTLIQTLFRIVEP+AG+I IDG++I IGLHDLR
Sbjct: 1284 LVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTLFRIVEPSAGEIRIDGVNILTIGLHDLR 1343
Query: 1321 SRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380
RLSIIPQDP MFEGT+RSNLDPLEE TD+QIWEALDKCQLGDEVRKKE KLDS V+ENG
Sbjct: 1344 LRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIWEALDKCQLGDEVRKKEQKLDSSVSENG 1403
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHR 1440
+NWSMGQRQLVCLGRVLLKRSKIL+LDEATASVDTATDNLIQ+TLR+HFSDCTV+TIAHR
Sbjct: 1404 DNWSMGQRQLVCLGRVLLKRSKILVLDEATASVDTATDNLIQKTLREHFSDCTVITIAHR 1463
Query: 1441 ITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSFE 1491
I+SVIDSD+VLLL++G+IEE+D P LLE+KSSSFS+LVAEYT RSSSSF+
Sbjct: 1464 ISSVIDSDMVLLLSNGIIEEYDTPVRLLEDKSSSFSKLVAEYTSRSSSSFD 1514
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Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1 | Back alignment and function description |
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Score = 1848 bits (4787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 921/1487 (61%), Positives = 1137/1487 (76%), Gaps = 14/1487 (0%)
Query: 7 FLLKPIFLRWFSCSLHLVLLVGLLVSWVWNKIKTGEGDHNRGSREMFKNKKALWYKLTLA 66
FLL+ + FS +L+LL+ + S V+ K + G + + + E FK+ + KL +
Sbjct: 14 FLLESNYFPMFSIFFNLLLLLVMFGSCVYKK-RLGWENSDAFTNERFKDMSLTYNKLVVI 72
Query: 67 CCFGVSLFNIVFSLLSYFYWYENGWSDYQLVTLLDFGVKTLGWSAICVCLHTVFLNSRQP 126
CC +S N V LLS F ++NGW +L+ LLD L W AI + + F S
Sbjct: 73 CCETLSALNSVLLLLSCFNLHKNGWDRSELMILLDLLFTALSWGAISFYIRSQFTYSHDQ 132
Query: 127 KLPILLKLWWAFYVFISCYCLIVDIVLCEKQVSLQIQYLISDVASAMTGLFLCFVGILSK 186
K PILL++WW Y SCY L+VDI L +KQ + + L+SDV + GLFLC+ + +
Sbjct: 133 KFPILLRVWWVLYFMFSCYRLLVDIALYKKQELVSVHLLLSDVLAVSVGLFLCYSCLQKQ 192
Query: 187 IEGEDALLLREPLLKADSNETDGTVPSI-KSEGADKLTPYSRAGVLSVITYSWINSLIAL 245
+GE LL E L + + T + K+E + +TP+S AG LS +++SW++ LI L
Sbjct: 193 GQGERINLLLEEPLLNGAESSAATSVQLDKAEDDEVVTPFSNAGFLSHVSFSWMSPLIVL 252
Query: 246 GNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVKLIKAMFCSVWKDVLV 305
GN+K +D EDVPQ+D+ D F F++KLE + G +TT KLIKA+F SVW+D+L+
Sbjct: 253 GNEKIIDSEDVPQVDNSDRAEKLFWIFRSKLEWDDG-ERRITTYKLIKALFFSVWRDILL 311
Query: 306 TGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFR 365
+ +YT++ YV PYL+DTFVQYLNG+R + N+G VLV+ F VAKLVEC +R FR
Sbjct: 312 STLFAFVYTVSCYVAPYLMDTFVQYLNGQRQYSNQGVVLVTTFFVAKLVECQARRNWYFR 371
Query: 366 LQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWLV 425
LQ+ GI MR+ L++MIY KGLTL +KQG +SGEIIN MTVDAER++ FSWY+HDPW++
Sbjct: 372 LQKAGIGMRSVLVSMIYEKGLTLPCYSKQGHTSGEIINLMTVDAERISAFSWYMHDPWIL 431
Query: 426 LFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSE 485
+ +++L++LILY++LG+ S+AA T +VML NIPL +++E FQ LM+SKD RMK TSE
Sbjct: 432 VLQISLALLILYRSLGLGSIAAFAATFLVMLGNIPLAKLEEKFQGNLMESKDNRMKKTSE 491
Query: 486 ILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATFGT 545
L NMRILKLQGWEMKFL KI++LR E GWLKK+VY SA S V W AP+FVS FG
Sbjct: 492 ALLNMRILKLQGWEMKFLHKILDLRGIEAGWLKKFVYNSAAISSVLWAAPSFVSATAFGA 551
Query: 546 CILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDL 605
C+LL +PLESGK+++A+ATFR+LQ PIY LPD ISMI+QTKVSL RIA+F CLDDLQ D
Sbjct: 552 CMLLKIPLESGKIIAALATFRILQTPIYKLPDTISMIVQTKVSLDRIATFLCLDDLQQDG 611
Query: 606 VEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSC 665
+E+ PSGSS+ +++ +G FSWD SS PTLKDI K+ HGM +A+CGTVGSGKSSLLS
Sbjct: 612 MERLPSGSSKMDVEVSNGAFSWDDSSPIPTLKDIRFKIPHGMNIAICGTVGSGKSSLLSS 671
Query: 666 ILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDL 725
ILGEVPKISG LK+CG KAY+AQSPWIQSGK+E+NILFGK M RE Y VL+ACSL KDL
Sbjct: 672 ILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENILFGKPMQREWYQRVLEACSLNKDL 731
Query: 726 EILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV 785
E+ F DQTVIGERGINLSGGQKQRIQIARALYQD+DIYLFDDPFSAVDAHTGSHLF+EV
Sbjct: 732 EVFPFRDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV 791
Query: 786 LLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQA 845
LLGLL +KTVIYVTHQ+EFLP ADLILVMKDG+ITQAGKYN+++ SGTDFMELVGAH A
Sbjct: 792 LLGLLRNKTVIYVTHQLEFLPEADLILVMKDGRITQAGKYNEILESGTDFMELVGAHTDA 851
Query: 846 LLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEERE 905
L A+ S E AS +++ KE + + + + +++ KGQLVQEEERE
Sbjct: 852 LAAVDSYEKGSASAQSTTS-----------KESKVSNDEEKQEEDLPSPKGQLVQEEERE 900
Query: 906 KGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGS 965
KGKVGF+VY KY+ A+GGALVP IL+ Q LFQ+L I SNYW+ W TP +KDVKP+V+GS
Sbjct: 901 KGKVGFTVYQKYMKLAYGGALVPIILVVQILFQVLNIGSNYWMAWVTPVSKDVKPLVSGS 960
Query: 966 TLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRII 1025
TL++VYV LA SSFC+L R+ L A G+K AT LFN+MH+ IFRA MSFFDATP GRI+
Sbjct: 961 TLILVYVFLATASSFCILVRAMLSAMTGFKIATELFNQMHFRIFRASMSFFDATPIGRIL 1020
Query: 1026 NRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYY 1085
NRASTDQSA DL +PS A + + ILG I VM QVAWQV IVF+P + +C WY+QYY
Sbjct: 1021 NRASTDQSAVDLRLPSQFSNLAIAAVNILGIIGVMGQVAWQVLIVFIPVIAACTWYRQYY 1080
Query: 1086 ISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIA 1145
IS+AREL+RL G+ ++P++QHF+ET+SG TTIRSFDQE RFR M+L D YSR FH
Sbjct: 1081 ISAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYSRLRFHAI 1140
Query: 1146 AAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFAC 1205
+AMEWL RLD+LS++ FA +LV L+S+P+G I+P+ AGLAVTY L LN+L ATLIW C
Sbjct: 1141 SAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAGLAVTYALNLNSLQATLIWTLC 1200
Query: 1206 DLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQG 1265
DLENK+ISVER+ QY IPSEP L IE +RP SWP G+I + +LQVRY P +P+VL+G
Sbjct: 1201 DLENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRGEITICNLQVRYGPHLPMVLRG 1260
Query: 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325
++CTF GG KTGIVGRTG GKSTLIQTLFRIVEPAAG+I IDGI+I IGLHDLRSRLSI
Sbjct: 1261 LTCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILTIGLHDLRSRLSI 1320
Query: 1326 IPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1385
IPQ+P MFEGTVRSNLDPLEE D+QIWEALDKCQLGDE+RKKE KLDS V+ENG+NWS+
Sbjct: 1321 IPQEPTMFEGTVRSNLDPLEEYADDQIWEALDKCQLGDEIRKKELKLDSPVSENGQNWSV 1380
Query: 1386 GQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVI 1445
GQRQLVCLGRVLLKRSK+L+LDEATASVDTATD LIQ+TLRQHFS CTV+TIAHRI+SVI
Sbjct: 1381 GQRQLVCLGRVLLKRSKVLILDEATASVDTATDTLIQETLRQHFSGCTVITIAHRISSVI 1440
Query: 1446 DSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSFEN 1492
DSD+VLLL+ GLIEE D+PA LLE+KSSSFS+LVAEYT S S F+
Sbjct: 1441 DSDMVLLLDQGLIEEHDSPARLLEDKSSSFSKLVAEYTASSDSRFKR 1487
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Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1842 bits (4770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 922/1482 (62%), Positives = 1137/1482 (76%), Gaps = 28/1482 (1%)
Query: 7 FLLKPIFLRWFSCSLHLVLLVGLLVSWVWNKIKTGEGDHNRGSREMFKNKKALWYKLTLA 66
LL+PI+L S L+LVLL+ L SW++ K E D + E FK+ + KL L
Sbjct: 8 LLLQPIYLSVLSFFLNLVLLLILFGSWLFKKRVACE-DTDAIMNEEFKHISFSYNKLVLI 66
Query: 67 CCFGVSLFNIVFSLLSYFYWYENGWSDYQLVTLLDFGVKTLGWSAICVCLHTVFLNSRQP 126
CC +S+F V SLLS +W+ NGW LD + L W +I V L + NS +
Sbjct: 67 CCVSLSVFYSVLSLLSCLHWHTNGWP------FLDLLLAALTWGSISVYLFGRYTNSCEQ 120
Query: 127 KLPILLKLWWAFYVFISCYCLIVDIVLCEKQVSLQIQYLISDVASAMTGLFLCFVGILSK 186
K+ LL++WW F+ +SCY L+VD VL +KQ + + ++ISD+ GLFLC + K
Sbjct: 121 KVLFLLRVWWVFFFVVSCYHLVVDFVLYKKQEMVSVHFVISDLVGVCAGLFLCCSCLWKK 180
Query: 187 IEGEDALLLREPLLKADSNETDGTVPSIKSEGADKLTPYSRAGVLSVITYSWINSLIALG 246
EGE LL+EPLL + + S+ + P+S+AG+LS +++SW++ LI LG
Sbjct: 181 GEGERIDLLKEPLLSSAES----------SDNEEVTAPFSKAGILSRMSFSWMSPLITLG 230
Query: 247 NKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVKLIKAMFCSVWKDVLVT 306
N+K +D++DVPQLD D+ F F++KLE + G +TT KLIKA+F SVW+D++++
Sbjct: 231 NEKIIDIKDVPQLDRSDTTESLFWIFRSKLEWDDG-ERRITTFKLIKALFLSVWRDIVLS 289
Query: 307 GFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRL 366
L +YT++ YV PYL+D FVQYLNG R ++N+GYVLV+ F VAKLVEC QR FR
Sbjct: 290 ALLAFVYTVSCYVAPYLMDNFVQYLNGNRQYKNQGYVLVTTFFVAKLVECQTQRQWFFRG 349
Query: 367 QQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWLVL 426
Q+ G+ MR+ L++MIY KGLTL +KQG +SGEIIN M VDA+R++ FSW++HDPW+++
Sbjct: 350 QKAGLGMRSVLVSMIYEKGLTLPCHSKQGHTSGEIINLMAVDADRISAFSWFMHDPWILV 409
Query: 427 FEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEI 486
+V+L++ ILYK+LG+ S+AA T++VML N P +++E FQ LMKSKD RMK TSE+
Sbjct: 410 LQVSLALWILYKSLGLGSIAAFPATILVMLANYPFAKLEEKFQSSLMKSKDNRMKKTSEV 469
Query: 487 LRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATFGTC 546
L NM+ILKLQGWEMKFLSKI+ LR E GWLKK+VY S+ + V W AP+F+S FG C
Sbjct: 470 LLNMKILKLQGWEMKFLSKILELRHIEAGWLKKFVYNSSAINSVLWAAPSFISATAFGAC 529
Query: 547 ILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLV 606
+LL +PLESGK+L+A+ATFR+LQ PIY LP+ ISMI+QTKVSL RIASF CLDDLQ D+V
Sbjct: 530 LLLKIPLESGKILAALATFRILQGPIYKLPETISMIVQTKVSLNRIASFLCLDDLQQDVV 589
Query: 607 EKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI 666
+ PSGSSE A++I +G FSWD SS PTL+D+N KV GM VA+CGTVGSGKSSLLS I
Sbjct: 590 GRLPSGSSEMAVEISNGTFSWDDSSPIPTLRDMNFKVSQGMNVAICGTVGSGKSSLLSSI 649
Query: 667 LGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLE 726
LGEVPKISG LK+CG KAY+AQSPWIQSGK+E+NILFGK M RE Y+ VL+ACSL KDLE
Sbjct: 650 LGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENILFGKPMEREWYDRVLEACSLNKDLE 709
Query: 727 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786
IL F DQTVIGERGINLSGGQKQRIQIARALYQD+DIYLFDDPFSAVDAHTGSHLF+EVL
Sbjct: 710 ILPFHDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 769
Query: 787 LGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQAL 846
LGLL KTVIYVTHQVEFLP ADLILVMKDGKITQAGKY+++++SGTDFMELVGAH +AL
Sbjct: 770 LGLLRHKTVIYVTHQVEFLPEADLILVMKDGKITQAGKYHEILDSGTDFMELVGAHTEAL 829
Query: 847 LALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEEREK 906
+ S E ASE+++ + V+ + KE + N N + GQLVQEEEREK
Sbjct: 830 ATIDSCETGYASEKSTTDKENEVLHH---KEKQENGSDNKPS-------GQLVQEEEREK 879
Query: 907 GKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGST 966
GKVGF+VY KY+ A+GGA++P IL+ Q LFQ+L I SNYW+ W TP +KDV+P V+G T
Sbjct: 880 GKVGFTVYKKYMALAYGGAVIPLILVVQVLFQLLSIGSNYWMTWVTPVSKDVEPPVSGFT 939
Query: 967 LLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIIN 1026
L++VYV LAV SSFC+L R+ L+A G+K AT LF +MH IFRA MSFFDATP GRI+N
Sbjct: 940 LILVYVLLAVASSFCILIRALLVAMTGFKMATELFTQMHLRIFRASMSFFDATPMGRILN 999
Query: 1027 RASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYI 1086
RASTDQS ADL +P A + I ILG I V+ QVAWQV IVF+P V +C WY+QYYI
Sbjct: 1000 RASTDQSVADLRLPGQFAYVAIAAINILGIIGVIVQVAWQVLIVFIPVVAACAWYRQYYI 1059
Query: 1087 SSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAA 1146
S+AREL+RL G+ ++PV+ HF+ET+SG TTIRSFDQE RFR M+L D YSR FH
Sbjct: 1060 SAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKFHSTG 1119
Query: 1147 AMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACD 1206
AMEWL RL++LS+ FA +LV L+S P+G I+P++AGLA+TY L LNTL ATLIW CD
Sbjct: 1120 AMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLAGLAITYALNLNTLQATLIWTLCD 1179
Query: 1207 LENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGI 1266
LENK+ISVER+ QYT IPSEPPL IE +RP SWPS G+I + +LQVRY P +P+VL G+
Sbjct: 1180 LENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITICNLQVRYGPHLPMVLHGL 1239
Query: 1267 SCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSII 1326
+CTFPGG KTGIVGRTG GKSTLIQTLFRIVEPAAG+I IDGI+I IGLHDLRSRLSII
Sbjct: 1240 TCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILSIGLHDLRSRLSII 1299
Query: 1327 PQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1386
PQDP MFEGT+RSNLDPLEE TD+QIWEALD CQLGDEVRKKE KLDS V+ENG+NWS+G
Sbjct: 1300 PQDPTMFEGTIRSNLDPLEEYTDDQIWEALDNCQLGDEVRKKELKLDSPVSENGQNWSVG 1359
Query: 1387 QRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID 1446
QRQLVCLGRVLLKRSK+L+LDEATAS+DTATDNLIQ+TLR HF+DCTV+TIAHRI+SVID
Sbjct: 1360 QRQLVCLGRVLLKRSKLLVLDEATASIDTATDNLIQETLRHHFADCTVITIAHRISSVID 1419
Query: 1447 SDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSS 1488
SD+VLLL+ GLI+E D+PA LLE++SS FS+LVAEYT S S
Sbjct: 1420 SDMVLLLDQGLIKEHDSPARLLEDRSSLFSKLVAEYTTSSES 1461
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7GB25|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1451 bits (3757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 746/1414 (52%), Positives = 974/1414 (68%), Gaps = 54/1414 (3%)
Query: 105 KTLGWSAIC-VCLHTVFLNSRQPKLPILLKLWWAFYVFISCYC-LIVD-IVLCEKQVSLQ 161
++L W + + LH + +S KLP L+++WW F F C C + VD L + S
Sbjct: 119 QSLAWFVLSFLVLHLKYKSSE--KLPFLVRIWW-FLAFSICLCTMYVDGRRLAIEGWSRC 175
Query: 162 IQYLISDVASAMTGLFLCFV------GILSKIEGEDALLLREPLLKADSNETDGTVPSIK 215
++++++A FLCF+ GI D L+EPLL ++
Sbjct: 176 SSHVVANLAVTPALGFLCFLAWRGVSGIQVTRSSSD---LQEPLL-------------VE 219
Query: 216 SEGAD-KLTPYSRAGVLSVITYSWINSLIALGNKKTLDLEDVPQLDSGDSVSGAFANFKN 274
E A K+TPYS AG++S+IT SW++ L++ G+K+ L+L+D+P L D ++ K+
Sbjct: 220 EEAACLKVTPYSTAGLVSLITLSWLDPLLSAGSKRPLELKDIPLLAPRDRAKSSYKVLKS 279
Query: 275 KLETEGGVGSGLTTVKLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGR 334
+ L +A+ S WK+ L TL SYVGPYLI FV YL G+
Sbjct: 280 NWKRCKSENPS-KPPSLARAIMKSFWKEAACNAVFAGLNTLVSYVGPYLISYFVDYLGGK 338
Query: 335 RDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQ 394
F +EGYVL F +KL+E + R + LG+ +R+AL AM+Y KGL LSS AKQ
Sbjct: 339 EIFPHEGYVLAGIFFTSKLIETVTTRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQ 398
Query: 395 GQSSGEIINFMTVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVIV 454
+SGEI+N+M VD +R+ D+SWY+HD W++ ++ L++ ILYK++GIA++A L T+I
Sbjct: 399 NHTSGEIVNYMAVDVQRIGDYSWYLHDIWMLPMQIVLALAILYKSVGIAAVATLVATIIS 458
Query: 455 MLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRET 514
+LV IPL +VQE++QDKLM +KDERM+ TSE LRNMR+LKLQ WE ++ ++ +R+ E
Sbjct: 459 ILVTIPLAKVQEDYQDKLMTAKDERMRKTSECLRNMRVLKLQAWEDRYRVRLEEMREEEY 518
Query: 515 GWLKKYVYTSAISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYN 574
GWL+K +Y+ A +F+FW +P FV+ TF T I L L +G +LSA+ATFR+LQ P+ N
Sbjct: 519 GWLRKALYSQAFVTFIFWSSPIFVAAVTFATSIFLGTQLTAGGVLSALATFRILQEPLRN 578
Query: 575 LPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNP 634
PD++SM+ QTKVSL RI+ F ++LQ D P G S A++I DG F WD S P
Sbjct: 579 FPDLVSMMAQTKVSLDRISGFLQEEELQEDATVVIPRGLSNIAIEIKDGVFCWDPFSSRP 638
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS 694
TL I +KV GMRVAVCGTVGSGKSS +SCILGE+PKISG +++CGT YV+QS WIQS
Sbjct: 639 TLSGIQMKVEKGMRVAVCGTVGSGKSSFISCILGEIPKISGEVRICGTTGYVSQSAWIQS 698
Query: 695 GKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754
G IE+NILFG M + +Y V+ ACSLKKD+E+ S GDQT+IGERGINLSGGQKQR+Q+A
Sbjct: 699 GNIEENILFGSPMEKTKYKNVIQACSLKKDIELFSHGDQTIIGERGINLSGGQKQRVQLA 758
Query: 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVM 814
RALYQD+DIYL DDPFSA+DAHTGS LF++ +L L+ KTV++VTHQVEFLPAADLILV+
Sbjct: 759 RALYQDADIYLLDDPFSALDAHTGSDLFRDYILSALAEKTVVFVTHQVEFLPAADLILVL 818
Query: 815 KDGKITQAGKYNDLINSGTDFMELVGAHEQALLALGSIEGRPASERASGEN--------- 865
K+G+I Q+GKY+DL+ +GTDF LV AH +A+ A+ P+SE S EN
Sbjct: 819 KEGRIIQSGKYDDLLQAGTDFKALVSAHHEAIEAMDI--PSPSSED-SDENPIRDSLVLH 875
Query: 866 --GGTVIANRI---VKEVENNKGQND-------KADEVAVSKGQLVQEEEREKGKVGFSV 913
V N I KEV+ +D K K QLVQEEER KGKV V
Sbjct: 876 NPKSDVFENDIETLAKEVQEGGSASDLKAIKEKKKKAKRSRKKQLVQEEERVKGKVSMKV 935
Query: 914 YWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVA 973
Y Y+ A+ GAL+P I+LAQ FQ LQIASN+W+ WA P T+ + V + LLIVY A
Sbjct: 936 YLSYMGAAYKGALIPLIILAQAAFQFLQIASNWWMAWANPQTEGDESKVDPTLLLIVYTA 995
Query: 974 LAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQS 1033
LA GSS + R+ L+AT G A LF M +FRAPMSFFD+TP+GRI+NR S DQS
Sbjct: 996 LAFGSSVFIFVRAALVATFGLAAAQKLFLNMLRSVFRAPMSFFDSTPAGRILNRVSIDQS 1055
Query: 1034 AADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELS 1093
DL IP +G +A + I++ G +AVM+ V WQVF++ VP +C W Q+YY++S+REL
Sbjct: 1056 VVDLDIPFRLGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELV 1115
Query: 1094 RLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGL 1153
R+V + K+P+I F E+++G+ TIR F QE RF RN+ L+D + RP F AA+EWL L
Sbjct: 1116 RIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFIKRNLYLLDCFVRPFFCSIAAIEWLCL 1175
Query: 1154 RLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIIS 1213
R+++LS++ FAF +V L+S P G IDP++AGLAVTYGL LN L+ I C LENKIIS
Sbjct: 1176 RMELLSTLVFAFCMVLLVSFPHGTIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIIS 1235
Query: 1214 VERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGG 1273
+ERI+QY+ I E P IE+ RP SWP+ G I+L+D++VRYA +P VL G+SC FPGG
Sbjct: 1236 IERIYQYSQIVGEAPAIIEDFRPPSSWPATGTIELVDVKVRYAENLPTVLHGVSCVFPGG 1295
Query: 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMF 1333
+K GIVGRTGSGKSTLIQ LFR++EP AG+I ID IDIS IGLHDLRSRL IIPQDP +F
Sbjct: 1296 KKIGIVGRTGSGKSTLIQALFRLIEPTAGKITIDNIDISQIGLHDLRSRLGIIPQDPTLF 1355
Query: 1334 EGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1393
EGT+R+NLDPLEE +D++IWEALDK QLGD VR K+ KLDS V ENG+NWS+GQRQLV L
Sbjct: 1356 EGTIRANLDPLEEHSDDKIWEALDKSQLGDVVRGKDLKLDSPVLENGDNWSVGQRQLVSL 1415
Query: 1394 GRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLL 1453
GR LLK++KIL+LDEATASVDTATDNLIQ+ +R F DCTV TIAHRI +VIDSDLVL+L
Sbjct: 1416 GRALLKQAKILVLDEATASVDTATDNLIQKIIRTEFEDCTVCTIAHRIPTVIDSDLVLVL 1475
Query: 1454 NHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSS 1487
+ G + EFD PA LLE+KSS F +LV EY+ RS+
Sbjct: 1476 SDGRVAEFDTPARLLEDKSSMFLKLVTEYSSRST 1509
|
Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1412 bits (3655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 737/1459 (50%), Positives = 991/1459 (67%), Gaps = 36/1459 (2%)
Query: 45 HNRGSREMFKN--------KKALWYKLTLACCFGVSLFNIVFSLLSYFYWYENGWSDYQL 96
NRGS ++ ++ K++ Y ++L C + L F LL F D +
Sbjct: 58 RNRGSNDVEEDLKKQSITVKQSFSYNISLLCSVSI-LGTHCFILLLLFRDSVVSRCDSSV 116
Query: 97 VTLLDFGVKTLGWSAICVCLHTVFLNSRQPKLPILLKLWWAFYVFISCYCLIVDIVLCEK 156
++ W + V + + R K P +L+ WW FI + + K
Sbjct: 117 SVFSAEVSQSFSWLFVSVVVVKI-RERRLVKFPWMLRSWW-LCSFILSFSFDAHFITA-K 173
Query: 157 QVSLQIQYLISDVASAMTGLFLCFVGILSKIEGE--DALLLREPLLKADSNETDGTVPSI 214
L+ Q +D+ + LFL V I K ++ EPLL D E +
Sbjct: 174 HEPLEFQDY-ADLTGLLASLFLLAVSIRGKTGFHLLESSGNTEPLLLGDQTEQN------ 226
Query: 215 KSEGADKLTPYSRAGVLSVITYSWINSLIALGNKKTLDLEDVPQLDSGDSVSGAFANFKN 274
K + +PY A + IT+SWIN L +LG K+ L+ +DVP +D DS F
Sbjct: 227 KKDSYSSSSPYGNATLFQRITFSWINPLFSLGYKRPLEKDDVPDIDVKDSARFCSHAFDQ 286
Query: 275 KLET---EGGVGSGLTTVKLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYL 331
KL+T + G G+ ++ VW+ + V+ +Y+GPYLI+ FV++L
Sbjct: 287 KLKTTKEKEGPGNAF----FYNSVLRYVWRKAAINAVFAVVNASTAYIGPYLINDFVEFL 342
Query: 332 NGRRDFE-NEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSS 390
+ ++ N GY+L F AK+VE + QR +F +QLG+R+RAALI+ IY KGL LSS
Sbjct: 343 SEKQSQSLNHGYLLALGFLTAKIVETVTQRQWIFGARQLGLRLRAALISHIYQKGLVLSS 402
Query: 391 QAKQGQSSGEIINFMTVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFG 450
Q++Q +SGEIIN+M+VD +R+ DF WY+++ W++ ++ +I IL K+LG+ +LAAL
Sbjct: 403 QSRQSHTSGEIINYMSVDVQRITDFIWYVNNIWMLPIQIFSAIYILQKHLGLGALAALVT 462
Query: 451 TVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLR 510
T++VM N PL R+Q N+Q +M +KD+RMKATSEIL+NM+ILKLQ W+ +FL+K+ LR
Sbjct: 463 TLMVMACNYPLTRLQRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLR 522
Query: 511 KRETGWLKKYVYTSAISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQV 570
K+E L K + A ++F+ WGAP+ +SV TF TC+L+ V L +G +LSA+ATF++LQ
Sbjct: 523 KKEYDCLWKSLRLQAFTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQS 582
Query: 571 PIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDIS 630
PI+ LPD++S ++Q+KVS RIAS+ + Q D VE +E +++I +G FSW+
Sbjct: 583 PIFGLPDLLSALVQSKVSADRIASYLQQSETQKDAVEYCSKDHTELSVEIENGAFSWEPE 642
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP 690
S PTL DI LKV GM+VAVCG VGSGKSSLLS ILGE+ K+ GT+++ G +AYV QSP
Sbjct: 643 SSRPTLDDIELKVKSGMKVAVCGAVGSGKSSLLSSILGEIQKLKGTVRVSGKQAYVPQSP 702
Query: 691 WIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750
WI SG I DNILFG E+Y + AC+L KD E+ S GD T IGERGIN+SGGQKQR
Sbjct: 703 WILSGTIRDNILFGSMYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQR 762
Query: 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADL 810
IQIARA+YQ++DIYL DDPFSAVDAHTG LF++ L+G+L KTV+YVTHQVEFLPAADL
Sbjct: 763 IQIARAVYQNADIYLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADL 822
Query: 811 ILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVI 870
ILVM++G++ QAGK+ +L+ F LVGAH +AL ++ SIE + + ++ I
Sbjct: 823 ILVMQNGRVMQAGKFEELLKQNIGFEVLVGAHNEALDSILSIEKSSRNFKEGSKDDTASI 882
Query: 871 ANRIVK--EVENNKGQNDKADEVAVSKGQLVQEEEREKGKVGFSVYWKYITTAFGGALVP 928
A + + E+N +K E +LVQ+EE EKG +G VY Y+TT GG LVP
Sbjct: 883 AESLQTHCDSEHNISTENKKKE-----AKLVQDEETEKGVIGKEVYLAYLTTVKGGLLVP 937
Query: 929 FILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTL 988
FI+LAQ+ FQ+LQIASNYW+ W P T + P + +L+VY LA GSS CVLAR+ L
Sbjct: 938 FIILAQSCFQMLQIASNYWMAWTAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTIL 997
Query: 989 LATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAF 1048
+A G TA F+ M IFRAPMSFFD+TP+GRI+NRASTDQS DL + +G AF
Sbjct: 998 VAIGGLSTAETFFSRMLCSIFRAPMSFFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAF 1057
Query: 1049 SIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFA 1108
SII+I+GTI VMSQVAWQV ++F+P +C++YQ+YY +ARELSR+ GV +AP++ HFA
Sbjct: 1058 SIIQIVGTIFVMSQVAWQVCVIFIPVAVACVFYQRYYTPTARELSRMSGVERAPILHHFA 1117
Query: 1109 ETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLV 1168
E+++G+TTIR+FDQ RF N+ L+D +SRP FH+A+AMEWL RL++LS FAF+LV
Sbjct: 1118 ESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLV 1177
Query: 1169 FLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPP 1228
L+++P+G I+P+IAGL VTYGL+LN L AT+IW C+ ENK+ISVERI QY+ IPSE P
Sbjct: 1178 LLVTLPEGVINPSIAGLGVTYGLSLNVLQATVIWNICNAENKMISVERILQYSKIPSEAP 1237
Query: 1229 LAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKST 1288
L I+ RP D+WP+ G I DLQVRYA P VL+ I+C FPGG+K G+VGRTGSGKST
Sbjct: 1238 LVIDGHRPLDNWPNVGSIVFRDLQVRYAEHFPAVLKNITCEFPGGKKIGVVGRTGSGKST 1297
Query: 1289 LIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEEST 1348
LIQ LFRIVEP+ G I+ID +DI+ IGLHDLRSRL IIPQDP +F+GT+R NLDPL + T
Sbjct: 1298 LIQALFRIVEPSQGTIVIDNVDITKIGLHDLRSRLGIIPQDPALFDGTIRLNLDPLAQYT 1357
Query: 1349 DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDE 1408
D +IWEA+DKCQLGD +R K+ +LD+ V ENGENWS+GQRQLVCLGRVLLK+S IL+LDE
Sbjct: 1358 DHEIWEAIDKCQLGDVIRAKDERLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDE 1417
Query: 1409 ATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLL 1468
ATASVD+ATD +IQ+ + Q F D TV+TIAHRI +VI+SDLVL+L+ G I EFD+PA LL
Sbjct: 1418 ATASVDSATDGVIQKIINQEFKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLL 1477
Query: 1469 ENKSSSFSQLVAEYTLRSS 1487
+ + S FS+L+ EY+LRS+
Sbjct: 1478 QREDSFFSKLIKEYSLRSN 1496
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 1248 bits (3228), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/1083 (55%), Positives = 790/1083 (72%), Gaps = 40/1083 (3%)
Query: 405 MTVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRV 464
M+VD +R+ DF WY++ W++ ++ +I IL K+LG+ +LAAL T++VM N PL R+
Sbjct: 1 MSVDVQRITDFIWYVNSIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVMACNYPLTRL 60
Query: 465 QENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTS 524
Q N+Q +M +KD+RMKATSEIL+NM+ILKLQ W+ +FL+K+ LRK+E L K +
Sbjct: 61 QRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQ 120
Query: 525 AISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQ 584
++F+ WGAP+ +SV TF TC+L+ V L +G +LSA+ATF++LQ PI+ LPD++S ++Q
Sbjct: 121 DFTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLSALVQ 180
Query: 585 TKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVF 644
+KVS RIAS+ + Q D VE + +E +++I +G FSW+ S PTL DI LKV
Sbjct: 181 SKVSADRIASYLQQSETQKDAVEYCSNDHTEFSVEIENGAFSWEPESSRPTLDDIELKVK 240
Query: 645 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFG 704
GM+VA+CG VGSGKSSL S ILGE+ K+ GT+++ G +AYV QSPWI SG I DNILFG
Sbjct: 241 SGMKVAICGAVGSGKSSLPSSILGEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNILFG 300
Query: 705 KEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIY 764
E+Y + AC+L KD E+ S GD T IGERGIN+SGGQKQRIQIARA+YQ++DIY
Sbjct: 301 SIYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVYQNADIY 360
Query: 765 LFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGK 824
L DDPFSAVDAHTG LF++ L+G+L KTV+YVTHQVEFLPAADLILVM++G++ QAGK
Sbjct: 361 LLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQAGK 420
Query: 825 YNDLINSGTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQ 884
+ +L+ F L + E+N
Sbjct: 421 FEELLKQNIGFEVLTQC-----------------------------------DSEHNIST 445
Query: 885 NDKADEVAVSKGQLVQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIAS 944
+K E +LVQ+EE EKG +G VY Y+TT GG LVPFI+LAQ+ FQ+LQIAS
Sbjct: 446 ENKKKE-----AKLVQDEETEKGVIGKEVYLTYLTTVKGGLLVPFIILAQSCFQMLQIAS 500
Query: 945 NYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEM 1004
NYW+ W P T + P + +L+VY LA GSS CVLAR+ L+A G TA F+ M
Sbjct: 501 NYWMAWTAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFFSRM 560
Query: 1005 HYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVA 1064
IFRAPMS+FD+TP+GRI+NRASTDQS DL + +G AFSII+I+GTI VMSQVA
Sbjct: 561 LCSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVA 620
Query: 1065 WQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQES 1124
WQV ++F+P +C++YQ+YY + RELSR+ GV +AP++ HFAE+++G+TTIR+FDQ
Sbjct: 621 WQVCVIFIPVAVACVFYQRYYTPTERELSRMSGVERAPILHHFAESLAGATTIRAFDQRD 680
Query: 1125 RFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAG 1184
RF N+ L+D +SRP FH+A+AMEWL RL++LS FAF+LV L+++P+G I+P+IAG
Sbjct: 681 RFISSNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAG 740
Query: 1185 LAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHG 1244
L VTYGL+LN L AT+IW C+ ENK+ISVERI Q++ IPSE PL I++ RP D+WP+ G
Sbjct: 741 LGVTYGLSLNVLQATVIWNICNAENKMISVERILQHSKIPSEAPLVIDDQRPLDNWPNVG 800
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304
I DLQVRYA P VL+ I+C FPGG+K G+VGRTGSGKSTLIQ LFRIVEP+ G I
Sbjct: 801 SIVFRDLQVRYAEHFPAVLKNITCAFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSHGTI 860
Query: 1305 LIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDE 1364
+ID +DI+ IGLHDLRSRL IIPQD +F+GT+R NLDPL + TD +IWEALDKCQLGD
Sbjct: 861 VIDNVDITKIGLHDLRSRLGIIPQDNALFDGTIRLNLDPLAQYTDREIWEALDKCQLGDV 920
Query: 1365 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424
+R K+ KLD+ V ENGENWS+GQRQLVCLGRVLLK+S IL+LDEATASVD+ATD +IQ+
Sbjct: 921 IRAKDEKLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKI 980
Query: 1425 LRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTL 1484
+ Q F D TV+TIAHRI +VI+SDLVL+L+ G I EFD+PA LL+ + S FS+L+ EY+L
Sbjct: 981 INQEFKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEYSL 1040
Query: 1485 RSS 1487
RS+
Sbjct: 1041 RSN 1043
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1100 bits (2846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/1454 (41%), Positives = 888/1454 (61%), Gaps = 39/1454 (2%)
Query: 48 GSREMFKNKKALWYKLTLACCFGVSLFNIVFSLLSYFYWYENGWSDYQLVTLLDFGVKTL 107
G R + W+K T+A +S ++V +L+ F + L+ L + + +
Sbjct: 86 GIRGRTPTRTTAWFKTTVAVTVLLSFCSVVLCVLA-FTGKRRTQRPWNLIDPLFWLIHAV 144
Query: 108 GWSAICVCLHTVFLNSRQPKL--PILLKLWW-AFYVFISCYCLI-VDIVLCEKQVSLQIQ 163
I V V R L P+ L+++W + +V S + + + L + SL+ +
Sbjct: 145 THLVIAVL---VLHQKRFAALNHPLSLRIYWISSFVLTSLFAVTGIFHFLSDAATSLRAE 201
Query: 164 YLISDVASAMTGLFLCFVGILSKIEGEDALLLREPLLKADSNETDGTVPSIKSEGADKLT 223
DVAS + F+ +++ + G L+ A++N ++ E +D ++
Sbjct: 202 ----DVASFFSFPLTAFL-LIASVRGITGLV------TAETNSPTKPSDAVSVEKSDNVS 250
Query: 224 PYSRAGVLSVITYSWINSLIALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVG 283
Y+ A V S + W+N L++ G K L LE VP L F++
Sbjct: 251 LYASASVFSKTFWLWMNPLLSKGYKSPLTLEQVPTLSPEHKAERLALLFESSWPKPSENS 310
Query: 284 SGLTTVKLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYV 343
S L++ WK++L T L ++ YVGP LI +FV + +G+R +GY
Sbjct: 311 SHPIRTTLLRCF----WKEILFTAILAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQGYY 366
Query: 344 LVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIIN 403
LV VAK VE L F Q+LG+ +R+ LI +Y KGL L+ A+Q G+I+N
Sbjct: 367 LVLILLVAKFVEVLTTHQFNFDSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVN 426
Query: 404 FMTVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGR 463
+M VDA++++D +H WL+ +V +++++LY +LG + + A+ G V V I LG
Sbjct: 427 YMAVDAQQLSDMMLQLHAIWLMPLQVTVALVLLYGSLGASVITAVIGLTGV-FVFILLGT 485
Query: 464 VQEN-FQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVY 522
+ N +Q LM ++D RMKAT+E+L MR++K Q WE F +I+ R E GWL K++Y
Sbjct: 486 QRNNGYQFSLMGNRDSRMKATNEMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKFLY 545
Query: 523 TSAISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMI 582
+ A + V W P +S TF T + L V L++G + + F++LQ PI P + +
Sbjct: 546 SIAGNIIVLWSTPVLISALTFATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISL 605
Query: 583 IQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLK 642
Q +SL R+ S+ +L D VE+ TA+++ DG+FSWD + P L DIN K
Sbjct: 606 SQAMISLGRLDSYMMSKELSEDAVERALGCDGNTAVEVRDGSFSWDDEDNEPALSDINFK 665
Query: 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNIL 702
V G A+ GTVGSGKSSLL+ +LGE+ +ISG +++CG+ YVAQ+ WI++G ++DNIL
Sbjct: 666 VKKGELTAIVGTVGSGKSSLLASVLGEMHRISGQVRVCGSTGYVAQTSWIENGTVQDNIL 725
Query: 703 FGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762
FG M RE+YN VL+ CSL+KDL+++ FGD+T IGERGINLSGGQKQRIQ+ARA+YQ+ D
Sbjct: 726 FGLPMVREKYNKVLNVCSLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLARAVYQECD 785
Query: 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQA 822
+YL DD FSAVDAHTGS +F++ + G L KTV+ VTHQV+FL D ILVM+DGKI ++
Sbjct: 786 VYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIVES 845
Query: 823 GKYNDLINSGTDFMELVGAHEQAL---------LALGSIEGRPASERASGENGGTVIANR 873
GKY++L++SG DF ELV AHE ++ A+ + P S AS T + +
Sbjct: 846 GKYDELVSSGLDFGELVAAHETSMELVEAGADSAAVATSPRTPTSPHASSPR--TSMESP 903
Query: 874 IVKEVENNKGQNDKADEVAVSKGQLVQEEEREKGKVGFSVYWKYITTAFGGALVPFILLA 933
+ ++ + ++ + +L++EEERE G+V VY +Y T A+G + +L
Sbjct: 904 HLSDLNDEHIKSFLGSHIVEDGSKLIKEEERETGQVSLGVYKQYCTEAYGWWGIVLVLFF 963
Query: 934 QTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAG 993
+Q +AS+YW+ + T + S ++ YV +A+ S V RS + G
Sbjct: 964 SLTWQGSLMASDYWLAYETSAKNAIS--FDASVFILGYVIIALVSIVLVSIRSYYVTHLG 1021
Query: 994 YKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRI 1053
KTA + F ++ I APMSFFD TPSGRI++RASTDQ+ D+ IP ++G +
Sbjct: 1022 LKTAQIFFRQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDILIPFMLGLVVSMYTTL 1081
Query: 1054 LGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSG 1113
L V Q AW +P IWY+ YY++S+REL+R+ + KAP+I HF+E+++G
Sbjct: 1082 LSIFIVTCQYAWPTAFFVIPLGWLNIWYRNYYLASSRELTRMDSITKAPIIHHFSESIAG 1141
Query: 1114 STTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISI 1173
TIRSF ++ FR N+K +++ R FH + EWLG RL+++ S + +F++ +
Sbjct: 1142 VMTIRSFRKQELFRQENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCISALFMVLL 1201
Query: 1174 PKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEE 1233
P I P GL+++YGL+LN++L I+ +C +ENK++SVERI Q+T IPSE +E
Sbjct: 1202 PSNVIRPENVGLSLSYGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPSESEWERKE 1261
Query: 1234 SRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTL 1293
+ P +WP HG + L DL+VRY P PLVL+GI+ GGEK G+VGRTGSGKSTLIQ L
Sbjct: 1262 TLPPSNWPFHGNVHLEDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVL 1321
Query: 1294 FRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIW 1353
FR+VEP+ G+I+IDGIDIS +GLHDLRSR IIPQ+PV+FEGTVRSN+DP E+ +DE+IW
Sbjct: 1322 FRLVEPSGGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIW 1381
Query: 1354 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASV 1413
++L++CQL D V K KLDS V +NGENWS+GQRQL+CLGRV+LKRS++L LDEATASV
Sbjct: 1382 KSLERCQLKDVVATKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFLDEATASV 1441
Query: 1414 DTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSS 1473
D+ TD +IQ+ +R+ F+ CT+++IAHRI +V+D D VL+++ G +EFD+PA LLE + S
Sbjct: 1442 DSQTDAVIQKIIREDFASCTIISIAHRIPTVMDGDRVLVIDAGKAKEFDSPARLLE-RPS 1500
Query: 1474 SFSQLVAEYTLRSS 1487
F+ LV EY LRS+
Sbjct: 1501 LFAALVQEYALRSA 1514
|
Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LYS2|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1089 bits (2816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/1297 (43%), Positives = 817/1297 (62%), Gaps = 34/1297 (2%)
Query: 189 GEDALLLREPLLKADSNETDGTVPSIKSEGADKLTPYSRAGVLSVITYSWINSLIALGNK 248
GE +L EPL DSN S K++ ++++ +++AG+ S +++ W+NSLI GN
Sbjct: 178 GESSLY--EPLNAGDSNGF-----SEKADFDNRVSQFAKAGLFSTLSFWWLNSLIKRGNV 230
Query: 249 KTLDLEDVPQLDSGDSVSGAFANFK-NKLETEGGVGSGLTTVKLIKAMFCSVWKDVLVTG 307
K L+ ED+P+L + ++ F+ N +E + +GS L + C VW+++L +G
Sbjct: 231 KDLEEEDIPELRKEERAETCYSLFEENLIEQKRRLGSSCQPSILKVTVLC-VWRELLTSG 289
Query: 308 FLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQ 367
F + +A GP L++ F+ G F EG VL +K++E L QR FR +
Sbjct: 290 FFAFMKIVAVSAGPLLLNAFILVAEGNASFRYEGLVLAVLLFFSKMIESLSQRQWYFRCR 349
Query: 368 QLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWLVLF 427
+G+R+R+ L A I K L L++ ++ S EI+N+ TVDA R+ +F ++ H W F
Sbjct: 350 IVGLRVRSLLTAAINKKQLRLNNSSRLIHSGSEIMNYATVDAYRIGEFPYWFHQLWTTSF 409
Query: 428 EVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEIL 487
++ +++ IL+ ++G+A+ +AL ++ +L N P+ ++Q FQ +LM S+DER+KA +E L
Sbjct: 410 QLLIALGILFHSVGVATFSALAVIILTVLCNAPIAKLQNKFQSELMTSQDERLKACNESL 469
Query: 488 RNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATFGTCI 547
NM++LKL WE F I LR E LK A ++ +FW +P FVS ATF TC
Sbjct: 470 VNMKVLKLYAWESHFKKVIEKLRNIELKSLKAVQMRKAYNAVLFWSSPVFVSAATFATCY 529
Query: 548 LLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQP-DLV 606
L++PL + + + +AT RL+Q P+ +PDVI + IQ KV+ RIA+F +LQ +
Sbjct: 530 FLDIPLRASNVFTFVATLRLVQDPVRMIPDVIGVTIQAKVAFSRIATFLEAPELQGGERR 589
Query: 607 EKQPSGSSETALDIVDGNFSWD-ISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSC 665
KQ S ++ A+ I +FSW+ S P L++++L+V G +VAVCG VGSGKS+LL+
Sbjct: 590 RKQRSEGNQNAIIIKSASFSWEEKGSTKPNLRNVSLEVKFGEKVAVCGEVGSGKSTLLAA 649
Query: 666 ILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDL 725
ILGE P +SGT+ GT AYV+Q+ WIQ+G I DNILFG M+ RY + SL KDL
Sbjct: 650 ILGETPCVSGTIDFYGTIAYVSQTAWIQTGTIRDNILFGGVMDEHRYRETIQKSSLDKDL 709
Query: 726 EILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV 785
E+L GDQT IGERG+NLSGGQKQRIQ+ARALYQD+DIYL DDPFSAVDAHT S LFQE
Sbjct: 710 ELLPDGDQTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFQEY 769
Query: 786 LLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQA 845
++ L+ K V+ VTHQV+FLPA D +L+M DG+IT+A Y +L+ DF +LV AH +
Sbjct: 770 VMDALAGKAVLLVTHQVDFLPAFDSVLLMSDGEITEADTYQELLARSRDFQDLVNAHRET 829
Query: 846 LLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEERE 905
SER T + VKE+ K + +L+++EERE
Sbjct: 830 ----------AGSERVVAVENPT----KPVKEINRVISSQSKV----LKPSRLIKQEERE 871
Query: 906 KGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGS 965
KG G Y +Y+ G LAQ F + QI N W+ P V+
Sbjct: 872 KGDTGLRPYIQYMNQNKGYIFFFIASLAQVTFAVGQILQNSWMAANVDN-----PQVSTL 926
Query: 966 TLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRII 1025
L++VY+ + + S C++ RS + K++ LF+++ +FRAPMSF+D+TP GRI+
Sbjct: 927 KLILVYLLIGLCSVLCLMVRSVCVVIMCMKSSASLFSQLLNSLFRAPMSFYDSTPLGRIL 986
Query: 1026 NRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYY 1085
+R S+D S DL +P + S + ++ V++ V WQV V VP V Q+YY
Sbjct: 987 SRVSSDLSIVDLDVPFGLIFVVASSVNTGCSLGVLAIVTWQVLFVSVPMVYLAFRLQKYY 1046
Query: 1086 ISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIA 1145
+A+EL R+ G ++ V H AE+V+G+ TIR+FD+E RF +++ L+D + P FH
Sbjct: 1047 FQTAKELMRINGTTRSYVANHLAESVAGAITIRAFDEEERFFKKSLTLIDTNASPFFHSF 1106
Query: 1146 AAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFAC 1205
AA EWL RL+ +S+I A T +I +P G G+A++YGL+LN L + C
Sbjct: 1107 AANEWLIQRLETVSAIVLASTAFCMILLPTGTFSSGFIGMALSYGLSLNMGLVYSVQNQC 1166
Query: 1206 DLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQG 1265
L N IISVER+ QYT + E P IEE+RP +WP G++++ DLQ+RY + PLVL+G
Sbjct: 1167 YLANWIISVERLNQYTHLTPEAPEVIEETRPPVNWPVTGRVEISDLQIRYRRESPLVLKG 1226
Query: 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325
ISCTF GG K GIVGRTGSGK+TLI LFR+VEP G+I++DG+DIS IG+HDLRSR I
Sbjct: 1227 ISCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPVGGKIVVDGVDISKIGVHDLRSRFGI 1286
Query: 1326 IPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1385
IPQDP +F GTVR NLDPL + +D +IWE L KCQL + V++KE LDS V E+G NWSM
Sbjct: 1287 IPQDPTLFNGTVRFNLDPLCQHSDAEIWEVLGKCQLKEVVQEKENGLDSLVVEDGSNWSM 1346
Query: 1386 GQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVI 1445
GQRQL CLGR +L+RS++L+LDEATAS+D ATD ++Q+T+R+ F+DCTV+T+AHRI +V+
Sbjct: 1347 GQRQLFCLGRAVLRRSRVLVLDEATASIDNATDLILQKTIRREFADCTVITVAHRIPTVM 1406
Query: 1446 DSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEY 1482
D +VL ++ G I E+D P L+++++S F +LV EY
Sbjct: 1407 DCTMVLSISDGRIVEYDEPMKLMKDENSLFGKLVKEY 1443
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1088 bits (2813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/1395 (41%), Positives = 854/1395 (61%), Gaps = 47/1395 (3%)
Query: 126 PKLPILLKLWWAFYVFISCYCLIVDIVLCEKQVSLQIQYLISDVASAMTGLFLCFVGILS 185
P P+ L+++W F ++ + I+ DVAS ++ L V +L
Sbjct: 157 PSHPLTLRIYWVFNFVVTTLFTVSGILHLLSDDPAAASLRADDVASFIS-FPLTAVLLLV 215
Query: 186 KIEGEDALLLREPLLKADSNETDGTVPSIKSEGADKLTPYSRAGVLSVITYSWINSLIAL 245
I+G +++ + A + D V E ++ ++ Y+ A +S + W+N L+
Sbjct: 216 SIKGSTGVVVTTSNVTAPAKSNDVVV-----EKSENVSLYASASFISKTFWLWMNPLLRK 270
Query: 246 GNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVKLIKAMFCSVWKDVLV 305
G K L+L+ VP L F++K LI+ WK++
Sbjct: 271 GYKSPLNLDQVPTLSPEHRAEKLATLFESKWPKPQENSRNPVRTTLIRCF----WKEIAF 326
Query: 306 TGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFR 365
T L ++ YVGP LI +FV + +G+R ++GY LV +AK VE L F
Sbjct: 327 TAVLAIIRLSVIYVGPVLIQSFVDFTSGKRSSPSQGYYLVLILLIAKFVEVLSTHQFNFN 386
Query: 366 LQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWLV 425
Q+LG+ +R+ LI +Y KGL L+ A+Q G+I+N+M VDA++++D +H WL+
Sbjct: 387 SQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLM 446
Query: 426 LFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQEN-FQDKLMKSKDERMKATS 484
+VA +I++LY LG + + + G + + V I LG + N +Q LM ++D RMKAT+
Sbjct: 447 PLQVAAAIVLLYNTLGPSVVTTVIG-LTGIFVFILLGTKRNNRYQFSLMMNRDSRMKATN 505
Query: 485 EILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATFG 544
E+L MR++K Q WE F +I+ R+ E GWL K++Y+ A + V W P +S TF
Sbjct: 506 EMLNYMRVIKFQAWEDHFNERILKFREMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFT 565
Query: 545 TCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPD 604
T + L V L++G + + F++LQ PI P + + Q +SL R+ ++ +L +
Sbjct: 566 TAVFLGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDAYMMSRELSEE 625
Query: 605 LVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLS 664
VE+ A++I DG+FSWD P +++IN +V G A+ GTVGSGKSSLL+
Sbjct: 626 TVERSQGCDGNVAVEIKDGSFSWDDEDDEPAIENINFEVKKGELAAIVGTVGSGKSSLLA 685
Query: 665 CILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKD 724
+LGE+ K+SG +++CGT AYVAQ+ WIQ+G ++DNILFG MNR +YN VL C L+KD
Sbjct: 686 SVLGEMHKLSGKVRVCGTTAYVAQTSWIQNGTVQDNILFGLPMNRSKYNEVLKVCCLEKD 745
Query: 725 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQE 784
++I+ FGDQT IGERGINLSGGQKQRIQ+ARA+YQ+SD+YL DD FSAVDAHTGS +F++
Sbjct: 746 MQIMEFGDQTEIGERGINLSGGQKQRIQLARAVYQESDVYLLDDVFSAVDAHTGSDIFKK 805
Query: 785 VLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQ 844
+ G L KT++ VTHQV+FL D ILVM+DG I Q+GKY++L++SG DF ELV AHE
Sbjct: 806 CVRGALKGKTILLVTHQVDFLHNVDRILVMRDGMIVQSGKYDELVSSGLDFGELVAAHET 865
Query: 845 A--LLALGSIEG--------RPASERASG------------ENGGTVIANRIVKEVENNK 882
+ L+ GS P ++R+ ++ + R+++
Sbjct: 866 SMELVEAGSASATAANVPMASPITQRSISIESPRQPKSPKVHRTTSMESPRVLRTTSMES 925
Query: 883 GQ----NDKA------DEVAVSKGQLVQEEEREKGKVGFSVYWKYITTAFGGALVPFILL 932
+ ND++ + +L++EEERE G+V F VY Y T A+G + ++
Sbjct: 926 PRLSELNDESIKSFLGSNIPEDGSRLIKEEEREVGQVSFQVYKLYSTEAYGWWGMILVVF 985
Query: 933 AQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATA 992
+Q +AS+YW+ + T +V + + VYV +A S V R+ +
Sbjct: 986 FSVAWQASLMASDYWLAYETSAKNEVS--FDATVFIRVYVIIAAVSIVLVCLRAFYVTHL 1043
Query: 993 GYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIR 1052
G KTA + F ++ + APMSFFD TPSGRI++RASTDQ+ D+ IP ++G A
Sbjct: 1044 GLKTAQIFFKQILNSLVHAPMSFFDTTPSGRILSRASTDQTNVDIFIPFMIGLVATMYTT 1103
Query: 1053 ILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVS 1112
+L V Q AW +P IWY+ YY++S+REL+RL + KAPVI HF+E+++
Sbjct: 1104 LLSIFIVTCQYAWPTVFFIIPLGWLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESIA 1163
Query: 1113 GSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLIS 1172
G TIR+F ++ FR N+K ++ R FH + EWLG RL+++ S + +F++
Sbjct: 1164 GVMTIRAFKKQPMFRQENVKRVNANLRMDFHNNGSNEWLGFRLELIGSWVLCISALFMVM 1223
Query: 1173 IPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIE 1232
+P I P GL+++YGL+LN +L I+ +C +ENK++SVERI Q+T IP+E I+
Sbjct: 1224 LPSNIIKPENVGLSLSYGLSLNGVLFWAIYLSCFIENKMVSVERIKQFTDIPAEAKWEIK 1283
Query: 1233 ESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQT 1292
ESRP +WP G I L D++VRY P PLVL+G++ GGEK G+VGRTGSGKSTLIQ
Sbjct: 1284 ESRPPPNWPYKGNIRLEDVKVRYRPNTPLVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQV 1343
Query: 1293 LFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQI 1352
LFR+VEP+ G+I+IDGIDI +GLHDLRSR IIPQ+PV+FEGTVRSN+DP E+ +DE+I
Sbjct: 1344 LFRLVEPSGGKIIIDGIDICTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEKYSDEEI 1403
Query: 1353 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATAS 1412
W++L++CQL D V K KLDS V +NGENWS+GQRQL+CLGRV+LKRS+IL LDEATAS
Sbjct: 1404 WKSLERCQLKDVVASKPEKLDSLVADNGENWSVGQRQLLCLGRVMLKRSRILFLDEATAS 1463
Query: 1413 VDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKS 1472
VD+ TD +IQ+ +R+ FSDCT+++IAHRI +V+D D VL+++ G +E+D+P LLE +
Sbjct: 1464 VDSQTDAMIQKIIREDFSDCTIISIAHRIPTVMDCDRVLVIDAGKAKEYDSPVRLLE-RQ 1522
Query: 1473 SSFSQLVAEYTLRSS 1487
S F+ LV EY LRS+
Sbjct: 1523 SLFAALVQEYALRSA 1537
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8LGU1|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1045 bits (2703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/1274 (44%), Positives = 804/1274 (63%), Gaps = 25/1274 (1%)
Query: 228 AGVLSVITYSWINSLIALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLT 287
AG S++++SW+N L++LG KK L ED+P + D A+ F +T G S
Sbjct: 206 AGFFSILSFSWMNPLLSLGFKKPLSPEDIPSVVPEDEAQLAYKKFSQAWDTLLGDESSTK 265
Query: 288 TVKLI-KAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNG-RRDFENEGYVLV 345
L+ +A+ +K+ + L T A P ++ FV Y N RD N G+ +
Sbjct: 266 ERNLVFRAVVKVYFKENIFIAVFAFLRTFAVVSLPLMLYVFVDYANSDHRDLRN-GFFNL 324
Query: 346 SAFCVAKLVECLCQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFM 405
+ + KLVE L R F ++ G+R+R+AL+ Y K L LSS ++ SSGEI+N++
Sbjct: 325 ACLVMLKLVESLTMRHWYFASRRSGMRIRSALMVAAYKKQLKLSSLGRKRHSSGEIVNYI 384
Query: 406 TVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQ 465
VDA R+ +F W+ H W + ++ LS +L+ +G + L ++ L+N+P ++
Sbjct: 385 AVDAYRMGEFLWWFHSGWSLSLQLLLSTAVLFGVVGAGAFPGLILLLLCGLLNLPFAKML 444
Query: 466 ENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSA 525
+N Q + M ++D+R+++TSEIL +M+++KLQ WE +F KI + R E WL K T A
Sbjct: 445 QNCQTQFMIAQDKRLRSTSEILNSMKVIKLQSWEDEFKKKIESCRDDEFTWLAKAQLTKA 504
Query: 526 ISSFVFWGAPTFVSVATFGTCILL-NVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQ 584
SF++W +PT VS F C LL + PL + + + +AT R++ P+ +PD IS IIQ
Sbjct: 505 FGSFLYWMSPTIVSSVVFLGCALLKSAPLNASTIFTVLATLRVMSEPVKIIPDAISAIIQ 564
Query: 585 TKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVF 644
VS QR+ +F D+L+ D +E+ +S TA+DI GNF W+ + PTL++I+L++
Sbjct: 565 GNVSFQRLNNFLLDDELKMDEIERSGLDASGTAVDIQVGNFGWEPETKIPTLRNIHLEIK 624
Query: 645 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFG 704
HG +VAVCG VG+GKSSLL +LGE+PK+SGT+K+ G+ AYV+Q+ WIQSG I DNIL+G
Sbjct: 625 HGQKVAVCGPVGAGKSSLLHAVLGEIPKVSGTVKVFGSIAYVSQTSWIQSGTIRDNILYG 684
Query: 705 KEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIY 764
K M RYNA + AC+L KD+ GD T IG+RGINLSGGQKQRIQ+ARA+Y D+D+Y
Sbjct: 685 KPMESRRYNAAIKACALDKDMNGFGHGDLTEIGQRGINLSGGQKQRIQLARAVYADADVY 744
Query: 765 LFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGK 824
L DDPFSAVDAHT LF + + L KTVI VTHQVEFL D ILVM++G ITQ+GK
Sbjct: 745 LLDDPFSAVDAHTAGVLFHKCVEDSLKEKTVILVTHQVEFLSEVDQILVMEEGTITQSGK 804
Query: 825 YNDLINSGTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVEN---N 881
Y +L+ GT F +LV AH A+ L AS E+ G + +E+ N
Sbjct: 805 YEELLMMGTAFQQLVNAHNDAVTVL---------PLASNESLGDLRKEGKDREIRNMTVV 855
Query: 882 KGQNDKADEVAVSKGQLVQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQ 941
+ ++ ++ + QL QEEE+E G VG + YI + G L+ +L Q F + Q
Sbjct: 856 EKIEEEIEKTDIPGVQLTQEEEKESGYVGMKPFLDYIGVSRGWCLLWSSVLGQVGFVVFQ 915
Query: 942 IASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLF 1001
AS YW+ +A P +T + L+ VY ++ S+ V AR+ A G K + F
Sbjct: 916 AASTYWLAFAIG-----IPKITNTMLIGVYSIISTLSAGFVYARAITTAHLGLKASKAFF 970
Query: 1002 NEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMS 1061
+ +F+APM FFD+TP GRI+ RAS+D + D +P + + + +M+
Sbjct: 971 SGFTNAVFKAPMLFFDSTPVGRILTRASSDLNVLDYDVPFAFIFVVAPAVELTAALLIMT 1030
Query: 1062 QVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFD 1121
V WQV I+ + A+ + Q YY++SAREL R+ G KAPV+ + AET G TIR+F
Sbjct: 1031 YVTWQVIIIALLALAATKVVQDYYLASARELIRINGTTKAPVMNYAAETSLGVVTIRAFG 1090
Query: 1122 QESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPA 1181
RF + L+D + F AAMEW+ LR++ L ++T + LI IPKG+I P
Sbjct: 1091 TAERFFKNYLNLVDADAVLFFLSNAAMEWVILRIETLQNVTLFTCALLLILIPKGYIAPG 1150
Query: 1182 IAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWP 1241
+ GL+++Y LTL L + C L N IISVERI QY IP EPP I++ RP SWP
Sbjct: 1151 LVGLSLSYALTLTQTQVFLTRWYCTLSNSIISVERIKQYMNIPEEPPAIIDDKRPPSSWP 1210
Query: 1242 SHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA 1301
S+G I L +L++RY P PLVL+GISCTF G + G+VGRTGSGKSTLI LFR+VEPA+
Sbjct: 1211 SNGTIHLQELKIRYRPNAPLVLKGISCTFREGTRVGVVGRTGSGKSTLISALFRLVEPAS 1270
Query: 1302 GQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQL 1361
G ILIDGIDIS IGL DLR +LSIIPQ+P +F G +R+NLDPL +D++IW+AL+KCQL
Sbjct: 1271 GCILIDGIDISKIGLKDLRMKLSIIPQEPTLFRGCIRTNLDPLGVYSDDEIWKALEKCQL 1330
Query: 1362 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI 1421
+ KLDS V++ GENWS+GQRQL CLGRVLLKR+KIL+LDEATAS+D+ATD +I
Sbjct: 1331 KTTISNLPNKLDSSVSDEGENWSVGQRQLFCLGRVLLKRNKILVLDEATASIDSATDAII 1390
Query: 1422 QQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481
Q+ +R+ F+DCTV+T+AHR+ +VIDSD+V++L+ G + E++ P+ L+E S FS+LVAE
Sbjct: 1391 QRIIREEFADCTVITVAHRVPTVIDSDMVMVLSFGDLVEYNEPSKLMET-DSYFSKLVAE 1449
Query: 1482 Y--TLRSSSSFENL 1493
Y + R +SS +NL
Sbjct: 1450 YWASCRGNSS-QNL 1462
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1496 | ||||||
| 224061172 | 1488 | multidrug resistance protein ABC transpo | 0.987 | 0.993 | 0.728 | 0.0 | |
| 359494293 | 1488 | PREDICTED: ABC transporter C family memb | 0.985 | 0.990 | 0.728 | 0.0 | |
| 359494289 | 1488 | PREDICTED: ABC transporter C family memb | 0.986 | 0.991 | 0.717 | 0.0 | |
| 359494168 | 1485 | PREDICTED: ABC transporter C family memb | 0.983 | 0.991 | 0.715 | 0.0 | |
| 356553519 | 1494 | PREDICTED: ABC transporter C family memb | 0.987 | 0.989 | 0.699 | 0.0 | |
| 356499431 | 2054 | PREDICTED: ABC transporter C family memb | 0.987 | 0.719 | 0.701 | 0.0 | |
| 356501620 | 1493 | PREDICTED: ABC transporter C family memb | 0.987 | 0.989 | 0.697 | 0.0 | |
| 356566246 | 1490 | PREDICTED: ABC transporter C family memb | 0.980 | 0.984 | 0.693 | 0.0 | |
| 147800077 | 1458 | hypothetical protein VITISV_007527 [Viti | 0.969 | 0.995 | 0.698 | 0.0 | |
| 449465513 | 1504 | PREDICTED: ABC transporter C family memb | 0.986 | 0.981 | 0.683 | 0.0 |
| >gi|224061172|ref|XP_002300362.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222847620|gb|EEE85167.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2225 bits (5766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1085/1490 (72%), Positives = 1268/1490 (85%), Gaps = 12/1490 (0%)
Query: 7 FLLKPIFLRWFSCSLHLVLLVGLLVSWVWNKIKTGEGDHNRGSREMF-KNKKALWYKLTL 65
FLLKPIFLR F+ SLHLVLL+ L VS+V K++ G+G +GS+E F NK+ +YK TL
Sbjct: 7 FLLKPIFLRGFTASLHLVLLLALFVSFVLKKLRVGDG--VQGSKERFSNNKRFFFYKQTL 64
Query: 66 ACCFGVSLFNIVFSLLSYFYWYENGWSDYQLVTLLDFGVKTLGWSAICVCLHTVFLNSRQ 125
C GVS N+V SL+SYFYWY NGWSD +LVTLLDF + L W+A+ V LHT NS +
Sbjct: 65 FCSLGVSSLNLVLSLVSYFYWYTNGWSDDKLVTLLDFVLTALSWAALSVYLHTQLFNSGE 124
Query: 126 PKLPILLKLWWAFYVFISCYCLIVDIVLCEKQVSLQIQYLISDVASAMTGLFLCFVGILS 185
K P LL++WWA + ISCYCL+VD ++ K S +IQYL+SD+ S T FLC+VG L
Sbjct: 125 TKFPFLLRVWWALFFSISCYCLVVDFLVFHKHGSFEIQYLVSDLVSVFTAFFLCYVGFL- 183
Query: 186 KIEGEDALLLREPLLKADSNETDGTVPSIKSEGADKLTPYSRAGVLSVITYSWINSLIAL 245
+ E +D LL +PLL DS+ +G + S KS G D LTPY+ AG+ S++T+SW+ SLIA
Sbjct: 184 RNECQDTLL-EQPLLNGDSSSING-LESSKSRGGDSLTPYANAGLFSILTFSWMGSLIAF 241
Query: 246 GNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVKLIKAMFCSVWKDVLV 305
GNKKTLDLEDVPQL S DSV GAF+ FKNKLE++ G S +T KL+KA+ S WK++L+
Sbjct: 242 GNKKTLDLEDVPQLHSVDSVVGAFSVFKNKLESDSGAASRVTAFKLLKALLLSAWKEILL 301
Query: 306 TGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFR 365
T L ++YT ASYVGPYLID+FVQ L+GR +++N+GY+L S F VAK+VECL QR FR
Sbjct: 302 TALLAIIYTSASYVGPYLIDSFVQCLDGRGEYKNQGYILASTFFVAKVVECLSQRHWFFR 361
Query: 366 LQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWLV 425
LQQ+GIR+RA MIYNK LTLSSQ+KQGQ+SGEIIN MTVDAER++DFSWY+HDPWLV
Sbjct: 362 LQQIGIRLRAVATTMIYNKALTLSSQSKQGQTSGEIINIMTVDAERISDFSWYMHDPWLV 421
Query: 426 LFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSE 485
+ +V L++LILYKNLG+A+++ T++VML+N PLGR+QE+FQDKLM+SKD+RMKAT+E
Sbjct: 422 ILQVGLALLILYKNLGLATVSTFVATIVVMLLNYPLGRLQEHFQDKLMESKDKRMKATTE 481
Query: 486 ILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATFGT 545
ILRNMRILKLQGWEMKFLSKI++LR+ ETGWLKKYVY SA+ SFVFWGAP+ V+VATFGT
Sbjct: 482 ILRNMRILKLQGWEMKFLSKILDLRQVETGWLKKYVYNSAMISFVFWGAPSLVAVATFGT 541
Query: 546 CILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDL 605
C+L+ PLESGK+LSA+ATFR+LQ PIYNLPD +SMI+QTKVSL RIASF LDDL+ D+
Sbjct: 542 CMLIGTPLESGKILSALATFRILQEPIYNLPDTVSMIVQTKVSLDRIASFISLDDLKNDV 601
Query: 606 VEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSC 665
+EK P GSS+TA++IVDGNFSWD+SS + TLK+I+ +VFHGMRVAVCGTVGSGKSSLLSC
Sbjct: 602 LEKLPIGSSDTAVEIVDGNFSWDVSSPSATLKNIDFQVFHGMRVAVCGTVGSGKSSLLSC 661
Query: 666 ILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDL 725
ILGEVP+ISGTLK+CGTKAYVAQSPWIQSGKIE+NILFGK+M+RERY VL+ACSLKKDL
Sbjct: 662 ILGEVPQISGTLKICGTKAYVAQSPWIQSGKIEENILFGKDMDRERYERVLEACSLKKDL 721
Query: 726 EILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV 785
EILSFGDQTVIGERGINLSGGQKQRIQIARALYQD+DIYLFDDPFSAVDAHTGSHLF+E
Sbjct: 722 EILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEA 781
Query: 786 LLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQA 845
LLGLL+SKTVIYVTHQVEFLPAADLILVMKDG+ITQAGKY+D++NSG+DFMELVGAH+ A
Sbjct: 782 LLGLLNSKTVIYVTHQVEFLPAADLILVMKDGRITQAGKYDDILNSGSDFMELVGAHKAA 841
Query: 846 LLALGSIEGRPASERASG--ENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEE 903
L A S + ASE S EN +RI+++ N QN K D VA K QL+QEEE
Sbjct: 842 LSAFDSKQAESASENESAGKENSS---GDRILQKEGNKDSQNGKEDVVAGPKAQLIQEEE 898
Query: 904 REKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVT 963
REKG VGF +YWK+ITTA+GGALVPFILLAQ LFQILQI SNYW+ WATP +KD+KPVV+
Sbjct: 899 REKGSVGFPIYWKFITTAYGGALVPFILLAQILFQILQIGSNYWMAWATPVSKDMKPVVS 958
Query: 964 GSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGR 1023
G TL++VYV LA+GSSFC+LAR+TLL TAGYKTATLLFN+MH CIFRAPMSFFD+TPSGR
Sbjct: 959 GYTLIMVYVCLAIGSSFCILARATLLVTAGYKTATLLFNKMHLCIFRAPMSFFDSTPSGR 1018
Query: 1024 IINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQ 1083
I+NRASTDQSA + IP VGA AFS I++LG IAVMSQVAWQVFIVF+P + +CIWYQ+
Sbjct: 1019 ILNRASTDQSAVETQIPYQVGALAFSSIQLLGIIAVMSQVAWQVFIVFIPVIAACIWYQR 1078
Query: 1084 YYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFH 1143
YYI SARELSRLVGVCKAPVIQHF+ET+SG+ TIRSFDQ+SRF++ NM + D YSRP FH
Sbjct: 1079 YYIPSARELSRLVGVCKAPVIQHFSETISGAATIRSFDQQSRFQETNMIVTDAYSRPKFH 1138
Query: 1144 IAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWF 1203
AAAMEWL RLDM SSITFAF+LVFL+S PKG IDPAIAGLAVTYGL LN L A +IW
Sbjct: 1139 AAAAMEWLCFRLDMFSSITFAFSLVFLVSFPKG-IDPAIAGLAVTYGLNLNMLQAWVIWN 1197
Query: 1204 ACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVL 1263
C+ ENKIISVERI QY IPSEPPL IE SRPN SWPSHG++++ +LQVRYAP MPLVL
Sbjct: 1198 LCNCENKIISVERILQYMSIPSEPPLIIEASRPNRSWPSHGEVEINNLQVRYAPHMPLVL 1257
Query: 1264 QGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323
+G++CTFPGG KTGIVGRTGSGKSTLIQTLFRIVEPAAG+I+ID IDISLIGLHDLRSRL
Sbjct: 1258 RGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGRIMIDDIDISLIGLHDLRSRL 1317
Query: 1324 SIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1383
SIIPQDP MFEGTVRSNLDPLEE TDEQIWEALDKCQLGDEVRKKE KLDS V ENGENW
Sbjct: 1318 SIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRKKERKLDSTVIENGENW 1377
Query: 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITS 1443
SMGQRQLVCLGRVLLK+SK+L+LDEATASVDT+TDNLIQQTLRQHFSDCTV+TIAHRITS
Sbjct: 1378 SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTSTDNLIQQTLRQHFSDCTVITIAHRITS 1437
Query: 1444 VIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSFENL 1493
V+DSD+VLLL++GLIEE+D+PA LLENKSSSF+QLVAEY +RS + FE
Sbjct: 1438 VLDSDMVLLLSNGLIEEYDSPARLLENKSSSFAQLVAEYRVRSDTGFEKF 1487
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494293|ref|XP_003634755.1| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2221 bits (5754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1089/1494 (72%), Positives = 1269/1494 (84%), Gaps = 20/1494 (1%)
Query: 4 GADFLLKPIFLRWFSCSLHLVLLVGLLVSWVWNKIKTGEGDHNRGSREMFKNKKALWYKL 63
G FLL P+FLR FS SLHLVLL+ L VSWV +IK G + E K + L+YK
Sbjct: 6 GTGFLLNPVFLRVFSASLHLVLLLLLFVSWVCKRIKGG-------APENCKRTRFLYYKQ 58
Query: 64 TLACCFGVSLFNIVFSLLSYFYWYENGWSDYQLVTLLDFGVKTLGWSAICVCLHTVFLNS 123
T ACC G+SL N++ L+YFYWY NGWSD +LVTLLD ++TL W A+CV LHT F+ S
Sbjct: 59 TFACCQGLSLLNLLLCFLNYFYWYRNGWSDERLVTLLDLVLRTLAWGAVCVYLHTQFIGS 118
Query: 124 RQPKLPILLKLWWAFYVFISCYCLIVDIVLCEKQVSLQIQYLISDVASAMTGLFLCFVGI 183
+PK P LL++WW FY ISCY L++DIV +K SL+IQYL+ D+ +TGLFLC+ G
Sbjct: 119 VEPKFPFLLRVWWGFYFSISCYFLVLDIV--KKHQSLRIQYLVPDIVYVITGLFLCYSGF 176
Query: 184 LSKIEGEDALLLREPLLKADSNETDGTVPSIKSEGADKLTPYSRAGVLSVITYSWINSLI 243
L K +GE+++L REPLL ++ + V S KS+G +TP+S+AG S++T+SWI LI
Sbjct: 177 LGKNQGEESIL-REPLLNGSTSIS--RVESNKSKGEATVTPFSKAGFFSLLTFSWIGPLI 233
Query: 244 ALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVKLIKAMFCSVWKDV 303
A GNKKTLDLEDVPQLD+ +SV+G F F NKL+ + G SG+TT+KL+KA+ + W ++
Sbjct: 234 AEGNKKTLDLEDVPQLDTSNSVAGVFPAFSNKLQCDSGGSSGVTTLKLVKALIFACWAEI 293
Query: 304 LVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRV 363
L+T FL ++ TLASYVGPYLIDTFVQYLNGRR+F+NEGY+L AF VAKLVE L R
Sbjct: 294 LLTAFLVLVKTLASYVGPYLIDTFVQYLNGRREFKNEGYLLAMAFFVAKLVERLSVRHWF 353
Query: 364 FRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPW 423
FRLQQ+GIR+RA LI MIYNKGLTLS Q+KQG S+GEIINFM+VDAER+ DFSWY+HDPW
Sbjct: 354 FRLQQVGIRIRAVLITMIYNKGLTLSCQSKQGHSTGEIINFMSVDAERIGDFSWYMHDPW 413
Query: 424 LVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKAT 483
+V+ +V L++LILYKNLG+AS+AA F TVIVML N+PLG+ QE FQDKLM+SKD+RMKAT
Sbjct: 414 MVIVQVTLALLILYKNLGLASVAAFFATVIVMLTNVPLGKWQEKFQDKLMESKDKRMKAT 473
Query: 484 SEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATF 543
SEILRNMRILKLQGWEMKFLSKI++LRK ETGWLKKY+YTSA+++FVFWGAPTFVSVATF
Sbjct: 474 SEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYLYTSAVTTFVFWGAPTFVSVATF 533
Query: 544 GTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQP 603
GTC+LL +PLESGK+LS++ATFR+LQ PIY+LPD+ISMI QTKVSL RIASF LDDL
Sbjct: 534 GTCMLLGIPLESGKILSSLATFRILQEPIYSLPDLISMIAQTKVSLDRIASFLRLDDLPS 593
Query: 604 DLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLL 663
D++E+ P GSS+TA++IVDGNFSWD+SS NPTLKDINL+V GMRVAVCGTVGSGKSSLL
Sbjct: 594 DVIERLPKGSSDTAIEIVDGNFSWDLSSPNPTLKDINLRVCRGMRVAVCGTVGSGKSSLL 653
Query: 664 SCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKK 723
SC+LGEVPKISG LKLCGTKAYVAQSPWIQSGKIE+NILFGKEM RERY VLDACSLKK
Sbjct: 654 SCMLGEVPKISGILKLCGTKAYVAQSPWIQSGKIEENILFGKEMERERYERVLDACSLKK 713
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
DLE+LSFGDQTVIGE GIN+SGGQKQRIQIARALYQ++DIYLFDDPFSAVDAHTG+HLF+
Sbjct: 714 DLEVLSFGDQTVIGEWGINMSGGQKQRIQIARALYQNADIYLFDDPFSAVDAHTGTHLFK 773
Query: 784 EVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHE 843
E LLGL SKTVIYVTHQVEFLPAADLILVMKDG++TQAGKYN+++NSGTDFMELVGAH+
Sbjct: 774 ECLLGLSGSKTVIYVTHQVEFLPAADLILVMKDGRVTQAGKYNEILNSGTDFMELVGAHK 833
Query: 844 QALLALGSIEGRPASERAS----GEN-GGTVIANRIVKEVENNKGQNDKADEVAVSKGQL 898
+ALLAL S+E SE+ S +N GGT + +V++ EN GQN KA+E+ KGQL
Sbjct: 834 KALLALNSVEAGSLSEKLSILEDSDNIGGT---SEVVEKEENRGGQNGKAEEIDGPKGQL 890
Query: 899 VQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDV 958
VQEEEREKGKVG VYWKYI TA+GGALVPFILL+Q LFQ+LQI SNYW+ WA+P + DV
Sbjct: 891 VQEEEREKGKVGLWVYWKYIRTAYGGALVPFILLSQILFQLLQIGSNYWMAWASPVSDDV 950
Query: 959 KPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDA 1018
KP V GSTL+IVYVALAVGSSFCVL+R+ LL TAGYKTAT+LFN+MH C+FRAPMSFFDA
Sbjct: 951 KPAVRGSTLIIVYVALAVGSSFCVLSRAMLLVTAGYKTATILFNKMHLCVFRAPMSFFDA 1010
Query: 1019 TPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSC 1078
TPSGRI+NRAS DQS D +P VGA+AF +I++LG IAVMSQVAWQVFIVF+P + +C
Sbjct: 1011 TPSGRILNRASADQSTIDTTMPMQVGAFAFQLIQLLGIIAVMSQVAWQVFIVFIPVIATC 1070
Query: 1079 IWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYS 1138
IWYQQYYI SARELSRL GVCKAPVIQHF+ET++GS TIRSFDQESRFRD NMKL+D Y
Sbjct: 1071 IWYQQYYIPSARELSRLAGVCKAPVIQHFSETIAGSMTIRSFDQESRFRDTNMKLVDGYL 1130
Query: 1139 RPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLA 1198
RP F+IA AMEWL RLDMLSS+TFAF+LVFLIS+P+G IDP IAGLA+TYGL LN + A
Sbjct: 1131 RPKFNIAGAMEWLCFRLDMLSSVTFAFSLVFLISVPEGVIDPGIAGLAMTYGLNLNMIQA 1190
Query: 1199 TLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQ 1258
+IW C++ENKIISVERI QYT IPSEPPL EE+R SWPSHG++D+ DLQVRYAP
Sbjct: 1191 RVIWNLCNMENKIISVERILQYTSIPSEPPLVTEENRLACSWPSHGEVDIQDLQVRYAPH 1250
Query: 1259 MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD 1318
MPLVL+G++CTF GG KTGIVGRTGSGKSTLIQTLFRIVEPAAGQI+IDG +IS IGL+D
Sbjct: 1251 MPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIMIDGTNISSIGLND 1310
Query: 1319 LRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1378
LR+RLSIIPQDP MFEGTVRSNLDPLEE +DEQIWEALDKCQLGDEVRKKEGKLDS V E
Sbjct: 1311 LRTRLSIIPQDPTMFEGTVRSNLDPLEEHSDEQIWEALDKCQLGDEVRKKEGKLDSAVIE 1370
Query: 1379 NGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIA 1438
NGENWSMGQRQLVCLGRVLLK+SK+L+LDEATASVDTATDNLIQQTLRQHF D TV+TIA
Sbjct: 1371 NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFVDSTVITIA 1430
Query: 1439 HRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSFEN 1492
HRITSV+DSD VLLL+HGLIEE+D P LLENKSSSF++LVAEYT+RS S+ EN
Sbjct: 1431 HRITSVLDSDKVLLLDHGLIEEYDTPTRLLENKSSSFAKLVAEYTVRSHSNLEN 1484
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494289|ref|XP_003634753.1| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2194 bits (5685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1073/1496 (71%), Positives = 1259/1496 (84%), Gaps = 20/1496 (1%)
Query: 4 GADFLLKPIFLRWFSCSLHLVLLVGLLVSWVWNKIKTGEGDHNRGSREMFKNKKALWYKL 63
G FLL P+FLR FS SLHLVLL+ L VSWV +I N G+ E +K + L+YK
Sbjct: 6 GIGFLLNPVFLRAFSASLHLVLLLLLFVSWVCKRI-------NGGALENYKRTRFLYYKQ 58
Query: 64 TLACCFGVSLFNIVFSLLSYFYWYENGWSDYQLVTLLDFGVKTLGWSAICVCLHTVFLNS 123
T ACC G+SL N L+YFYWY NGWS +LVTLLD ++TL W A+ V LHT F S
Sbjct: 59 TFACCQGLSLLNFFLCFLNYFYWYRNGWSGEKLVTLLDLVLRTLSWGAVSVYLHTQFHGS 118
Query: 124 RQPKLPILLKLWWAFYVFISCYCLIVDIVLCEKQVSLQIQYLISDVASAMTGLFLCFVGI 183
+PK P LL++WW FY ISCYCL++DIV +K SLQ+Q+L+ D+ +TGLFLC+ G
Sbjct: 119 VEPKFPFLLRVWWGFYFSISCYCLVIDIV--KKDQSLQVQFLVPDIVYVITGLFLCYSGF 176
Query: 184 LSKIEGEDALLLREPLLKADSNETDGTVPSIKSEGADKLTPYSRAGVLSVITYSWINSLI 243
L +GE+++L REPLL ++ + V S +S+G + +TP+S+AG S++T+SWI LI
Sbjct: 177 LGNNQGEESIL-REPLLNGGTSIS--IVESDESKGEETVTPFSKAGFFSLLTFSWIGPLI 233
Query: 244 ALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVKLIKAMFCSVWKDV 303
A GNKKTLDL DVPQLD+ +SV F F+NKL+ + G +G+TT+KL+KA+ + W ++
Sbjct: 234 AEGNKKTLDLGDVPQLDTSNSVVAVFPAFRNKLQCDCGGSNGVTTLKLVKALIFAFWAEI 293
Query: 304 LVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRV 363
L+T +L LASYVGPYLIDTFVQYLNGRR+F+NEGYVLV F +AKLVECL R
Sbjct: 294 LLTALFLLLDILASYVGPYLIDTFVQYLNGRREFKNEGYVLVMVFFLAKLVECLSLRQCS 353
Query: 364 FRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPW 423
FRLQQ+G R+RA +I MIYNKGLTLS Q+KQG ++GEIINFM+VDAER+ DF WY+H PW
Sbjct: 354 FRLQQVGFRIRAVMITMIYNKGLTLSCQSKQGHTTGEIINFMSVDAERIGDFIWYMHGPW 413
Query: 424 LVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKAT 483
+V+ +V L++LILYKN+G+AS+AA F T+IVML N+PLG+ +E FQ KLM+SKD+RMKAT
Sbjct: 414 MVIVQVTLALLILYKNVGLASVAAFFATIIVMLANVPLGKWEEKFQGKLMESKDKRMKAT 473
Query: 484 SEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATF 543
SEILRNMRILKLQGWEMKFLSKI++LRK ETGWLKKY+YTSA+++F FW APTFVSV TF
Sbjct: 474 SEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYLYTSAMTTFFFWVAPTFVSVVTF 533
Query: 544 GTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQP 603
GTC+L+ +PLESGK+LS++ATFR+LQ PIY LPD+ISMI+QTKVSL RI SF L DLQ
Sbjct: 534 GTCMLIGIPLESGKILSSLATFRILQQPIYLLPDLISMIVQTKVSLDRITSFLRLVDLQS 593
Query: 604 DLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLL 663
D++E+ P GSS+TA++IVDGNFSWD+SS NPTLKDINL+V GMRVAVCGTVGSGKSSLL
Sbjct: 594 DVIERLPKGSSDTAIEIVDGNFSWDLSSPNPTLKDINLRVCRGMRVAVCGTVGSGKSSLL 653
Query: 664 SCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKK 723
SC+LGEVPKISG LKLCGTKAYVAQSPWIQSGKIE+NILFGKEM+RERY VLDACSLKK
Sbjct: 654 SCMLGEVPKISGILKLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLDACSLKK 713
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
DLE+LSFGDQTVIGERGINLSGGQKQRIQIARALYQ++DIYLFDDPFSAVDAHTG+HLF+
Sbjct: 714 DLEVLSFGDQTVIGERGINLSGGQKQRIQIARALYQNADIYLFDDPFSAVDAHTGTHLFK 773
Query: 784 EVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHE 843
E LLGLL SKTVIYVTHQVEFLPAADLILVMKDG+ITQAGKYN+++NSGTDFMELVGAH+
Sbjct: 774 ECLLGLLGSKTVIYVTHQVEFLPAADLILVMKDGRITQAGKYNEILNSGTDFMELVGAHK 833
Query: 844 QALLALGSIEGRPASERAS----GEN-GGTVIANRIVKEVENNKGQNDKADEVAVSKGQL 898
+AL AL S+E SE+ S +N GGT + +V++ EN+ GQN KA+E+ KGQL
Sbjct: 834 KALSALNSVETGSLSEKLSIHEDSDNIGGT---SEVVEKEENSGGQNGKAEEIDGPKGQL 890
Query: 899 VQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDV 958
VQEEEREKGKVG VYW Y+ TA+GGALVPFILL+Q LFQ+LQI SNYW+ WA+P + DV
Sbjct: 891 VQEEEREKGKVGLWVYWNYMRTAYGGALVPFILLSQILFQLLQIGSNYWMAWASPVSDDV 950
Query: 959 KPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDA 1018
KP V GSTL+IVYVALAVGSSFCVL+R+ LL TAGYKTAT+LFN+MH C+FRAPMSFFDA
Sbjct: 951 KPAVRGSTLIIVYVALAVGSSFCVLSRAMLLVTAGYKTATILFNKMHLCVFRAPMSFFDA 1010
Query: 1019 TPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSC 1078
TPSGRI+NRASTDQS D I + VGA AF +I++LG IAVMSQVAWQVFIVF+P +C
Sbjct: 1011 TPSGRILNRASTDQSTIDTNIATQVGACAFQLIQLLGIIAVMSQVAWQVFIVFIPVAATC 1070
Query: 1079 IWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYS 1138
IWYQQYYI SARELSRL GVCKAP+IQHF+ET+SGS TIRSFDQESRFRD NMKL+D Y
Sbjct: 1071 IWYQQYYIPSARELSRLAGVCKAPIIQHFSETISGSMTIRSFDQESRFRDTNMKLIDGYI 1130
Query: 1139 RPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLA 1198
RP F IA A+EWL RLDMLSS+TFAF+LVFLIS+P+G IDP +AGL VTYGL LN +LA
Sbjct: 1131 RPKFSIAGAIEWLCFRLDMLSSVTFAFSLVFLISVPEGVIDPGLAGLTVTYGLNLNMILA 1190
Query: 1199 TLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQ 1258
+IW C++EN IISVERI QYT IPSEPPL IEE+RP SWPSHG++D+ DLQVRYAP
Sbjct: 1191 WVIWNFCNMENIIISVERILQYTSIPSEPPLVIEENRPACSWPSHGQVDIQDLQVRYAPH 1250
Query: 1259 MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD 1318
MPLVL+G++CTF GG KTGIVGRTGSGKSTLIQTLFRIVEPAAGQI IDG +IS IGLHD
Sbjct: 1251 MPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGQITIDGTNISSIGLHD 1310
Query: 1319 LRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1378
LRSRLSIIPQDP MFEGTVRSNLDPLEE +DEQIWEALDKCQLGDEVRKKEGKLDS VTE
Sbjct: 1311 LRSRLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWEALDKCQLGDEVRKKEGKLDSAVTE 1370
Query: 1379 NGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIA 1438
NGENWSMGQRQLVCLGRVLLK+SK+L+LDEATASVDTATDNLIQQTLRQHF D TV+TIA
Sbjct: 1371 NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFVDSTVITIA 1430
Query: 1439 HRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSFENLA 1494
HRITSV+DSD+VLLL+HGL+EE+D P LLENKSSSF++LVAEYT+RS+SS EN+A
Sbjct: 1431 HRITSVLDSDMVLLLDHGLVEEYDTPTRLLENKSSSFAKLVAEYTVRSNSSLENVA 1486
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494168|ref|XP_002265605.2| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2181 bits (5652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1065/1488 (71%), Positives = 1242/1488 (83%), Gaps = 16/1488 (1%)
Query: 4 GADFLLKPIFLRWFSCSLHLVLLVGLLVSWVWNKIKTGEGDHNRGSREMFKNKKALWYKL 63
G FLL P LR FS S HLVLL+ L VSW KIK G + E K +YK
Sbjct: 12 GIGFLLNPTSLRAFSASFHLVLLLFLFVSWACKKIKMG-------ALENCKRTGFSYYKQ 64
Query: 64 TLACCFGVSLFNIVFSLLSYFYWYENGWSDYQLVTLLDFGVKTLGWSAICVCLHTVFLNS 123
CC G+S+FN+ L+YFYWY+NGWSD QLVTL D ++T W+ +CV LHT FL S
Sbjct: 65 IFVCCLGLSVFNLALFFLNYFYWYKNGWSDEQLVTLSDLALRTFAWATVCVYLHTQFLGS 124
Query: 124 RQPKLPILLKLWWAFYVFISCYCLIVDIVLCEKQVSLQIQYLISDVASAMTGLFLCFVGI 183
+PK P L++WW FY ISCYCL++DIV ++ S IQ+L+ D +TGLFLC++G+
Sbjct: 125 VEPKFPFSLRVWWGFYFSISCYCLVIDIV--KQHQSQPIQFLVPDAVYVITGLFLCYLGL 182
Query: 184 LSKIEGEDALLLREPLLKADSNETDGTVPSIKSEGADKLTPYSRAGVLSVITYSWINSLI 243
K +GE+++L RE LL S V S KS+G + +TP+S AGV S++T+SW+ LI
Sbjct: 183 WGKNQGEESIL-RESLLHG-SASISTRVASNKSKGEETVTPFSNAGVFSLLTFSWMGPLI 240
Query: 244 ALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVKLIKAMFCSVWKDV 303
ALGNKKTLDLEDVPQLD+ +SV G F F++KLE +GG GSG+TT+KL+KAM S W ++
Sbjct: 241 ALGNKKTLDLEDVPQLDAVNSVVGGFPIFRSKLEGDGGGGSGVTTLKLVKAMILSAWAEI 300
Query: 304 LVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRV 363
L++ +LYTLASYVGPYLIDTFVQYLNG+R F+NEGY LVSAF VAKLVECL R
Sbjct: 301 LLSALFALLYTLASYVGPYLIDTFVQYLNGQRQFKNEGYFLVSAFLVAKLVECLSMRHWF 360
Query: 364 FRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPW 423
FRLQQ+GIRMRA L+ IYNK L +S +KQ +SGEIINF++VDAER+ DF WY+HDPW
Sbjct: 361 FRLQQVGIRMRAVLVTKIYNKVLAVSYHSKQCHTSGEIINFISVDAERIGDFGWYMHDPW 420
Query: 424 LVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKAT 483
+V +VAL++LILYKNLG+AS+AA F TVI+ML N+PL + QE FQDKLM+SKD+RMK+T
Sbjct: 421 MVTLQVALALLILYKNLGLASIAAFFATVIIMLANVPLAKFQEKFQDKLMESKDKRMKST 480
Query: 484 SEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATF 543
SEILRNMRILKLQGWEMKFLSKI++LRK ETGWLKKYVYT AI++FVFW P FVSV +F
Sbjct: 481 SEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYVYTLAITTFVFWVGPIFVSVVSF 540
Query: 544 GTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQP 603
GT +L+ +PLESGK+LS++ATFR+LQ PIYNLPD ISMI QTKVSL RIASF LDDLQP
Sbjct: 541 GTAMLMGIPLESGKILSSLATFRILQEPIYNLPDTISMIAQTKVSLDRIASFLRLDDLQP 600
Query: 604 DLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLL 663
D+VEK P G+S TA++IV+GNFSWD+SS +PTLKDINL+V HGMRVAVCG VGSGKSSLL
Sbjct: 601 DVVEKLPKGTSSTAIEIVNGNFSWDLSSPHPTLKDINLQVHHGMRVAVCGAVGSGKSSLL 660
Query: 664 SCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKK 723
SCILGEVPKISGTLKL GTKAYVAQSPWIQ GKIE+NILFGKEM+RERY VLDAC+LKK
Sbjct: 661 SCILGEVPKISGTLKLSGTKAYVAQSPWIQGGKIEENILFGKEMDRERYERVLDACTLKK 720
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
DLEIL FGDQTVIGERGINLSGGQKQRIQIARALYQD+DIYLFDDPFSAVDAHTG+HLF+
Sbjct: 721 DLEILPFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGTHLFK 780
Query: 784 EVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHE 843
E LLGLL SKTV+YVTHQVEFLPAADLILVMK+G+ITQAGKYND++N G+DF+ELVGAH+
Sbjct: 781 ECLLGLLDSKTVVYVTHQVEFLPAADLILVMKEGRITQAGKYNDILNYGSDFVELVGAHK 840
Query: 844 QALLALGSIEGRPAS--ERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQE 901
+AL AL SIE +S S + G T + +V + EN GQ + K QLVQE
Sbjct: 841 KALSALESIEAEKSSIMSENSVDTGST---SEVVPKEENRNGQTGNIEGTDGPKAQLVQE 897
Query: 902 EEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPV 961
EEREKGKVGFSVYWKYITTA+GGALVPFILL+Q LFQ+LQI SNYW+ WATP ++DVKP
Sbjct: 898 EEREKGKVGFSVYWKYITTAYGGALVPFILLSQILFQLLQIGSNYWMAWATPVSEDVKPA 957
Query: 962 VTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPS 1021
V GSTL++VYVALA+GSS CVL+R+ L+ TAGY+TAT+LFN+MH IFRAPMSFFDATPS
Sbjct: 958 VGGSTLILVYVALAIGSSLCVLSRAMLVVTAGYRTATILFNKMHLSIFRAPMSFFDATPS 1017
Query: 1022 GRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWY 1081
GRI+NRASTDQSA D+ IP ++ AFS I++LG IAVMSQV WQVFIVFVP + +CIWY
Sbjct: 1018 GRILNRASTDQSAVDMDIPMVIWKCAFSFIQLLGIIAVMSQVVWQVFIVFVPMIATCIWY 1077
Query: 1082 QQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPT 1141
Q+YYISSAREL+RLVGVCKAPVIQHF+ET+SGSTTIRSFDQESRFRD NMKL+D Y+RP
Sbjct: 1078 QRYYISSARELARLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLIDGYTRPK 1137
Query: 1142 FHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLI 1201
F+ AAAMEWL RLD+LSSITFAF+LVFLISIP+G IDP IAGLAVTYGL LNTL A ++
Sbjct: 1138 FNSAAAMEWLCFRLDVLSSITFAFSLVFLISIPEGAIDPGIAGLAVTYGLNLNTLQAWVV 1197
Query: 1202 WFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPL 1261
W C++ENKIISVER+ QYT IPSEPPL +E ++P SWPSHG++D+ DLQVRYAP +PL
Sbjct: 1198 WNLCNMENKIISVERMLQYTSIPSEPPLVMEGNKPACSWPSHGEVDIRDLQVRYAPHLPL 1257
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
VL+G++C FPGG KTGIVGRTGSGKSTLIQTLFRIVEP AG+I+IDG +ISLIGLHDLRS
Sbjct: 1258 VLRGLTCNFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIMIDGTNISLIGLHDLRS 1317
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1381
RLSIIPQDP MFEGTVRSNLDPLEE +DEQIWEALDKCQLGDEVRKKEGKLDS V ENGE
Sbjct: 1318 RLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWEALDKCQLGDEVRKKEGKLDSAVNENGE 1377
Query: 1382 NWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRI 1441
NWSMGQRQLVCLGRVLLK+SK+L+LDEATASVDTATDNLIQQTLRQHF D TV+TIAHRI
Sbjct: 1378 NWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFVDSTVITIAHRI 1437
Query: 1442 TSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSS 1489
TSV+DSD+VLLL+HGLIEE D PA LLENKSSSF++LVAEYT+RS S+
Sbjct: 1438 TSVLDSDMVLLLDHGLIEEHDTPARLLENKSSSFAKLVAEYTVRSKSN 1485
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553519|ref|XP_003545103.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2158 bits (5591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1044/1493 (69%), Positives = 1234/1493 (82%), Gaps = 15/1493 (1%)
Query: 3 LGADFLLKPIFLRWFSCSLHLVLLVGLLVSWVWNKIKTGEGDHNRGSREMFKNKKALWYK 62
L LLKPIFL FS +HL+LL+ + +SWVWNKI G D ++ + +K
Sbjct: 10 LSTAVLLKPIFLHGFSAFIHLLLLLAVSLSWVWNKITAGARDESK------EKPSHTLFK 63
Query: 63 LTLACCFGVSLFNIVFSLLSYFYWYENGWSDYQLVTLLDFGVKTLGWSAICVCLHTVFLN 122
T+ GVS FN + L +YFYWY +GWS+ +LVTLLD +KTL W +CVCL F +
Sbjct: 64 TTVFSSLGVSAFNFLLCLFTYFYWYTSGWSEEKLVTLLDLALKTLAWGVVCVCLQNGFFS 123
Query: 123 SRQPKLPILLKLWWAFYVFISCYCLIVDIVLC-EKQVSLQIQYLISDVASAMTGLFLCFV 181
S + + + W FY+ +SCYC +VDIV+ E++V+L +YL+SDV S GLF C+V
Sbjct: 124 SGERRFSFFFRAWCTFYLVVSCYCFVVDIVVVSERRVALPTRYLVSDVVSTCVGLFFCYV 183
Query: 182 GILSKIEGEDALLLREPLLKADSNETDGTVPSIKSEGADKLTPYSRAGVLSVITYSWINS 241
G K E ++EPLL +D+ E S +S+G D +TP+S AG LS++T+SW+
Sbjct: 184 GYFVKNEVHVDNGIQEPLLNSDALE------SKESKGGDTVTPFSYAGFLSILTFSWVGP 237
Query: 242 LIALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVKLIKAMFCSVWK 301
LIA+GNKKTLDLEDVPQLD DSV GAF +F+ KLE + G + +TT+KL K++ S WK
Sbjct: 238 LIAVGNKKTLDLEDVPQLDGRDSVIGAFPSFREKLEADCGGINRVTTLKLAKSLIMSAWK 297
Query: 302 DVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRF 361
++L+T FL +L TLASYVGPYLID FVQYL+G+R +EN+GY LVSAF AKLVECL QR
Sbjct: 298 EILITAFLALLNTLASYVGPYLIDGFVQYLDGQRLYENQGYFLVSAFFFAKLVECLTQRH 357
Query: 362 RVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHD 421
+F+LQQ+G+R+RA L+ MIYNK LTLS Q+KQG +SGEIINFMTVDAERV FSWY+HD
Sbjct: 358 WIFKLQQVGLRIRALLVTMIYNKALTLSCQSKQGHTSGEIINFMTVDAERVGVFSWYMHD 417
Query: 422 PWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMK 481
W+V +V L++LILYKNLG+AS+AAL TV++ML N+PLG +QE FQ KLM+SKD RMK
Sbjct: 418 LWMVALQVTLALLILYKNLGLASIAALVATVVIMLANVPLGSLQEKFQKKLMESKDTRMK 477
Query: 482 ATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVA 541
ATSEILRNMRILKLQGWE+KFLSKI LRK E GWLKKYVYT+A+++FVFWG+PTFVSV
Sbjct: 478 ATSEILRNMRILKLQGWEIKFLSKITELRKNEQGWLKKYVYTAAVTTFVFWGSPTFVSVV 537
Query: 542 TFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDL 601
TFGTC+L+ +PLESGK+LSA+ATFR+LQ PIY LPD ISMI QTKVSL RI SF LDDL
Sbjct: 538 TFGTCMLIGIPLESGKILSALATFRILQEPIYRLPDTISMIAQTKVSLDRIVSFLRLDDL 597
Query: 602 QPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSS 661
+ D+VEK P GSS+TA+++VDGNFSWD+SS NPTL++INLKVFHGMRVAVCGTVGSGKS+
Sbjct: 598 RSDVVEKLPWGSSDTAIEVVDGNFSWDLSSPNPTLQNINLKVFHGMRVAVCGTVGSGKST 657
Query: 662 LLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSL 721
LLSC+LGEVPKISG LK+CGTKAYVAQSPWIQSGKIEDNILFG+ M+RERY VL+ACSL
Sbjct: 658 LLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGERMDRERYEKVLEACSL 717
Query: 722 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL 781
KKDLEILSFGDQT+IGERGINLSGGQKQRIQIARALYQD+DIYLFDDPFSAVDAHTGSHL
Sbjct: 718 KKDLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 777
Query: 782 FQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGA 841
F+E LLGLLSSKTV+YVTHQVEFLPAADLILVMKDGKITQ GKY DL+NSG DFMELVGA
Sbjct: 778 FKECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYTDLLNSGADFMELVGA 837
Query: 842 HEQALLALGSIEGRPASERASG-ENGGTVIANRIVKEVENNKG-QNDKADEVAVSKGQLV 899
H++AL L S++G S + E V KE E K QN K D+ + +GQLV
Sbjct: 838 HKKALSTLDSLDGATVSNEINALEQDVNVSGTYGFKEKEARKDEQNGKTDKKSEPQGQLV 897
Query: 900 QEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVK 959
QEEEREKGKVGFSVYWK ITTA+GGALVPFILLAQ LFQ LQI SNYW+ WATP + DV+
Sbjct: 898 QEEEREKGKVGFSVYWKCITTAYGGALVPFILLAQILFQALQIGSNYWMAWATPISSDVE 957
Query: 960 PVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDAT 1019
P V G+TL+ VYV LA+GSSFC+LAR+ LL TAGYKTAT+LFN+MH+CIFRAPMSFFD+T
Sbjct: 958 PPVEGTTLIAVYVGLAIGSSFCILARAMLLVTAGYKTATILFNKMHFCIFRAPMSFFDST 1017
Query: 1020 PSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCI 1079
PSGRI+NRASTDQSA D IP + ++AF +I++LG IAVMSQ AWQVF+VF+P + I
Sbjct: 1018 PSGRILNRASTDQSALDTDIPYQIASFAFIMIQLLGIIAVMSQAAWQVFVVFIPVIAVSI 1077
Query: 1080 WYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSR 1139
WYQQYYI SAREL+RLVGVCKAP+IQHF+ET+SG++TIRSFDQ+SRF++ NMKL D YSR
Sbjct: 1078 WYQQYYIPSARELARLVGVCKAPIIQHFSETISGTSTIRSFDQQSRFQETNMKLTDGYSR 1137
Query: 1140 PTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLAT 1199
P F+IA AMEWL RLDMLSSITFAF+LVFLISIP+GFIDP +AGLAVTYGL LN + A
Sbjct: 1138 PKFNIAGAMEWLCFRLDMLSSITFAFSLVFLISIPQGFIDPGLAGLAVTYGLNLNMIQAW 1197
Query: 1200 LIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQM 1259
+IW C++ENKIISVERI QYTCI SEPPL ++E+RP+ SWPS+G++ + DLQVRYAP +
Sbjct: 1198 MIWNLCNMENKIISVERILQYTCISSEPPLVVDENRPDPSWPSYGEVGIQDLQVRYAPHL 1257
Query: 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL 1319
PLVL+G++C F GG KTGIVGRTGSGKSTLIQTLFRIV+P +GQI+ID I+IS IGLHDL
Sbjct: 1258 PLVLRGLTCKFRGGLKTGIVGRTGSGKSTLIQTLFRIVQPTSGQIMIDSINISSIGLHDL 1317
Query: 1320 RSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1379
RSRLSIIPQDP MFEGTVR+NLDPLEE +DEQIWEALDKCQLGDEVRKKEGKLDSKVTEN
Sbjct: 1318 RSRLSIIPQDPTMFEGTVRNNLDPLEEYSDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1377
Query: 1380 GENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439
GENWSMGQRQLVCLGRVLLK+SK+L+LDEATASVDTATDNLIQQTLRQ FS TV+TIAH
Sbjct: 1378 GENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQQFSGSTVITIAH 1437
Query: 1440 RITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSFEN 1492
RITSV+ SD+VLLL+ GLIEE+D P L+ENKSSSF+QLVAEYT+RS+SSFE
Sbjct: 1438 RITSVLHSDMVLLLSQGLIEEYDTPTRLIENKSSSFAQLVAEYTMRSNSSFEK 1490
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499431|ref|XP_003518544.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2155 bits (5585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1048/1493 (70%), Positives = 1232/1493 (82%), Gaps = 15/1493 (1%)
Query: 3 LGADFLLKPIFLRWFSCSLHLVLLVGLLVSWVWNKIKTGEGDHNRGSREMFKNKKALWYK 62
L LLKPIFL S LHL+LLV +++SWVW K G GD ++ K +K
Sbjct: 570 LSTAVLLKPIFLHGLSGFLHLLLLVAVVLSWVWRKFTAGPGDESK------KKPNNSLFK 623
Query: 63 LTLACCFGVSLFNIVFSLLSYFYWYENGWSDYQLVTLLDFGVKTLGWSAICVCLHTVFLN 122
T+ +S FN + ++YFYWY +GWS+ +LVTLLD +KTL W +CVCL F +
Sbjct: 624 TTVFSSLALSAFNFLLCFINYFYWYTSGWSEEKLVTLLDLALKTLAWGVVCVCLQKGFFS 683
Query: 123 SRQPKLPILLKLWWAFYVFISCYCLIVDIVLCE-KQVSLQIQYLISDVASAMTGLFLCFV 181
S Q + + W+ FY+F+SCYC++VDIV+ ++VSL QYL+SDV S GLF C+V
Sbjct: 684 SGQRRFSFFFRAWFTFYLFVSCYCIVVDIVVMSGRRVSLPTQYLVSDVVSTCVGLFFCYV 743
Query: 182 GILSKIEGEDALLLREPLLKADSNETDGTVPSIKSEGADKLTPYSRAGVLSVITYSWINS 241
G K E + EPLL ADS E+ T +G D +TP+S AG+LS++T+SW+
Sbjct: 744 GYFVKNEVHVDNGIHEPLLNADSLESKET------KGGDSVTPFSYAGILSILTFSWVGP 797
Query: 242 LIALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVKLIKAMFCSVWK 301
LIA+GNKKTLDLEDVPQLDS DSV GAF F+ K+E + G + +TT+KL+K++ S WK
Sbjct: 798 LIAVGNKKTLDLEDVPQLDSRDSVIGAFPTFREKVEADCGGINSVTTLKLVKSLIISAWK 857
Query: 302 DVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRF 361
++L+T FL +L TLASYVGPYLID FVQYL+G+R +EN+GY LVSAF AKLVECL QR
Sbjct: 858 EILITAFLVLLNTLASYVGPYLIDGFVQYLDGQRLYENQGYFLVSAFFFAKLVECLTQRH 917
Query: 362 RVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHD 421
FRLQQ+G+R+RA L+ MIYNK LTLS Q+KQG +SGEIINFMTVDAERV FSWY+HD
Sbjct: 918 WFFRLQQVGLRIRALLVTMIYNKALTLSCQSKQGHTSGEIINFMTVDAERVGVFSWYMHD 977
Query: 422 PWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMK 481
W+V +V L++LILYKNLG+AS+AA TV +ML N+PLG +QE FQ KLM+SKD RMK
Sbjct: 978 LWMVALQVTLALLILYKNLGLASIAAFVATVAIMLANVPLGSLQEKFQKKLMESKDTRMK 1037
Query: 482 ATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVA 541
ATSEILRNMRILKLQGWEMKFLSKI LRK E GWLKKYVYT+A+++FVFWG+PTFVSV
Sbjct: 1038 ATSEILRNMRILKLQGWEMKFLSKITELRKNEQGWLKKYVYTAAVTTFVFWGSPTFVSVV 1097
Query: 542 TFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDL 601
TFGTC+L+ +PLESGK+LSA+ATFR+LQ PIY LPD ISMI QTKVSL RI SF LDDL
Sbjct: 1098 TFGTCMLMGIPLESGKILSALATFRILQEPIYGLPDTISMIAQTKVSLDRIVSFLRLDDL 1157
Query: 602 QPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSS 661
+ D+VEK P GSS+TA+++VDGNFSWD+SS +PTL++INLKVFHGMRVAVCGTVGSGKS+
Sbjct: 1158 RSDVVEKLPWGSSDTAIEVVDGNFSWDLSSPSPTLQNINLKVFHGMRVAVCGTVGSGKST 1217
Query: 662 LLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSL 721
LLSC+LGEVPKISG LK+CGTKAYVAQSPWIQSGKIEDNILFG+ M+R+RY VL+ACSL
Sbjct: 1218 LLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGERMDRDRYEKVLEACSL 1277
Query: 722 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL 781
KKDLEILSFGDQT+IGERGINLSGGQKQRIQIARALYQD+DIYLFDDPFSAVDAHTGSHL
Sbjct: 1278 KKDLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 1337
Query: 782 FQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGA 841
F+E LLGLL SKTV+YVTHQVEFLPAADLILVMKDGKITQ GKY DL+NSG DFMELVGA
Sbjct: 1338 FKECLLGLLCSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYTDLLNSGADFMELVGA 1397
Query: 842 HEQALLALGSIEGRPASERASG-ENGGTVIANRIVKEVENNKG-QNDKADEVAVSKGQLV 899
H++AL L S++G S S E V KE E +K QN + D + +GQLV
Sbjct: 1398 HKKALSTLDSLDGAAVSNEISVLEQDVNVSDTHGFKEKEASKDEQNGQTDNKSELQGQLV 1457
Query: 900 QEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVK 959
QEEEREKGKVGFSVYWK ITTA+GGALVPFILLAQ LFQ LQI SNYW+ WATP ++DV+
Sbjct: 1458 QEEEREKGKVGFSVYWKCITTAYGGALVPFILLAQILFQALQIGSNYWMAWATPISEDVQ 1517
Query: 960 PVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDAT 1019
P V G+TL+ VYV LA+GSSFC+LAR+ LL TAGYKTAT+LFN+MH+CIFRAPMSFFD+T
Sbjct: 1518 PPVEGTTLIAVYVGLAIGSSFCILARAILLVTAGYKTATILFNKMHFCIFRAPMSFFDST 1577
Query: 1020 PSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCI 1079
PSGRI+NRASTDQSA D IP + ++AF +I++LG I VMSQ AWQVFIVF+P + I
Sbjct: 1578 PSGRILNRASTDQSALDTDIPYQIASFAFILIQLLGIIGVMSQAAWQVFIVFIPVIAISI 1637
Query: 1080 WYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSR 1139
YQQYYI SARELSRLVGVCKAP+IQHFAET+SG++TIRSFDQ+SRF++ NMKL D YSR
Sbjct: 1638 LYQQYYIPSARELSRLVGVCKAPIIQHFAETISGTSTIRSFDQQSRFQETNMKLTDGYSR 1697
Query: 1140 PTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLAT 1199
P F+IA AMEWL RLDMLSSITFAF+L+FLISIP+GFIDP +AGLAVTYGL LN + A
Sbjct: 1698 PKFNIAGAMEWLCFRLDMLSSITFAFSLIFLISIPQGFIDPGLAGLAVTYGLNLNMVQAW 1757
Query: 1200 LIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQM 1259
+IW C++ENKIISVERI QYTCIP EP L ++++RP+ SWPS+G++D+ DL+VRYAP +
Sbjct: 1758 MIWNLCNMENKIISVERILQYTCIPCEPSLVVDDNRPDPSWPSYGEVDIQDLKVRYAPHL 1817
Query: 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL 1319
PLVL+G++C F GG KTGIVGRTGSGKSTLIQTLFRIVEP AGQ++ID I+IS IGLHDL
Sbjct: 1818 PLVLRGLTCKFRGGLKTGIVGRTGSGKSTLIQTLFRIVEPTAGQVMIDNINISSIGLHDL 1877
Query: 1320 RSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1379
RSRLSIIPQDP MFEGTVR+NLDPLEE TDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN
Sbjct: 1878 RSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1937
Query: 1380 GENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439
GENWSMGQRQLVCLGRVLLK+SK+L+LDEATASVDTATDNLIQQTLRQHFSD TV+TIAH
Sbjct: 1938 GENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDSTVITIAH 1997
Query: 1440 RITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSFEN 1492
RITSV+DSD+VLLL+ GLIEE+D P LLENKSSSF+QLVAEYT+RS+SSFE
Sbjct: 1998 RITSVLDSDMVLLLSQGLIEEYDTPTRLLENKSSSFAQLVAEYTMRSNSSFEK 2050
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501620|ref|XP_003519622.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2142 bits (5549), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1042/1493 (69%), Positives = 1231/1493 (82%), Gaps = 15/1493 (1%)
Query: 3 LGADFLLKPIFLRWFSCSLHLVLLVGLLVSWVWNKIKTGEGDHNRGSREMFKNKKALWYK 62
L LLKPIFL S LHL+LLV +++SWVW K G GD ++ K +K
Sbjct: 9 LSTAVLLKPIFLHGLSGFLHLLLLVAVVLSWVWRKFTAGPGDESK------KKPNNSLFK 62
Query: 63 LTLACCFGVSLFNIVFSLLSYFYWYENGWSDYQLVTLLDFGVKTLGWSAICVCLHTVFLN 122
T+ +S FN + ++YFYWY +GWS+ +LVTLLD +KTL W +CVCL F +
Sbjct: 63 TTVFSSLALSAFNFLLCFINYFYWYTSGWSEEKLVTLLDLALKTLAWGVVCVCLQKAFFS 122
Query: 123 SRQPKLPILLKLWWAFYVFISCYCLIVDIVLCE-KQVSLQIQYLISDVASAMTGLFLCFV 181
S Q + W+ FY+ +SCYC++VDIV+ ++VSL QYL+SD S G F C+V
Sbjct: 123 SGQRRFSFFFSAWFTFYLSVSCYCIVVDIVVMSGRRVSLPTQYLVSDAVSTCVGFFFCYV 182
Query: 182 GILSKIEGEDALLLREPLLKADSNETDGTVPSIKSEGADKLTPYSRAGVLSVITYSWINS 241
G K E ++EPLL ADS E+ T +G D +TP+S AG+LS++T+SW+
Sbjct: 183 GYFVKNEVHVDNDIQEPLLNADSLESKET------KGGDTVTPFSNAGILSILTFSWVGP 236
Query: 242 LIALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVKLIKAMFCSVWK 301
LIA+GNKKTLDLEDVPQLDS DSV GAF F+ K+E + G + +TT+KL+K++ S WK
Sbjct: 237 LIAVGNKKTLDLEDVPQLDSRDSVIGAFPTFREKVEADCGGINSVTTLKLVKSLIISAWK 296
Query: 302 DVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRF 361
++L+T FL +L TLASYVGPYLID FVQYL G+R +EN+GY LVSAF AKLVECL +R
Sbjct: 297 EILITAFLVLLKTLASYVGPYLIDGFVQYLGGQRLYENQGYFLVSAFFFAKLVECLTRRH 356
Query: 362 RVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHD 421
FRLQQ+G+R+RA L+ MIYNK LTLS Q+KQG +SGEIINFMTVDAERV FSWY+HD
Sbjct: 357 WFFRLQQVGLRIRALLVTMIYNKALTLSCQSKQGHTSGEIINFMTVDAERVGVFSWYMHD 416
Query: 422 PWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMK 481
W+V+ +V L++LILYKNLG+AS+AA TVI+ML N+PLG +QE FQ KLM+SKD RMK
Sbjct: 417 LWMVVLQVTLALLILYKNLGLASIAAFVATVIIMLANVPLGSLQEKFQKKLMESKDTRMK 476
Query: 482 ATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVA 541
ATSEILRNMRILKLQGWEMKFL KI LRK E GWLKKYVYT+A+++FVFWG+PTFVSV
Sbjct: 477 ATSEILRNMRILKLQGWEMKFLLKITELRKNEQGWLKKYVYTAALTTFVFWGSPTFVSVV 536
Query: 542 TFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDL 601
TFGTC+L+ +PLESGK+LSA+ATFR LQ PIYNLPD ISMI QTKVSL RI SF LDDL
Sbjct: 537 TFGTCMLIGIPLESGKILSALATFRTLQEPIYNLPDTISMIAQTKVSLDRIVSFLRLDDL 596
Query: 602 QPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSS 661
+ D+VEK P GSS+TA+++VDGNFSWD+SS +PTL++INLKVFHGMRVAVCGTVGSGKS+
Sbjct: 597 RSDVVEKLPWGSSDTAIEVVDGNFSWDLSSPSPTLQNINLKVFHGMRVAVCGTVGSGKST 656
Query: 662 LLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSL 721
LLSC+LGEVPKISG LK+CGTKAYVAQS WIQSGKIEDNILFG+ M+RERY VL+ACSL
Sbjct: 657 LLSCVLGEVPKISGILKVCGTKAYVAQSSWIQSGKIEDNILFGECMDRERYEKVLEACSL 716
Query: 722 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL 781
KKDLEILSFGDQT+IGERGINLSGGQKQRIQIARALYQD+DIYLFDDPFSAVDAHTGSHL
Sbjct: 717 KKDLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 776
Query: 782 FQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGA 841
F+E LLGLL SKTV+YVTHQVEFLPAADLILVMKDGKITQ GKY DL+NSG DFMELVGA
Sbjct: 777 FKECLLGLLCSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYTDLLNSGADFMELVGA 836
Query: 842 HEQALLALGSIEGRPASERASG-ENGGTVIANRIVKEVENNKG-QNDKADEVAVSKGQLV 899
H++AL L S++G S S E + KE +++K QN K D+ + +GQLV
Sbjct: 837 HKKALSTLDSLDGAAVSNEISVLEQDVNLSGAHGFKEKKDSKDEQNGKTDDKSEPQGQLV 896
Query: 900 QEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVK 959
QEEEREKGKVGFSVYWK ITTA+GGALVPFILLAQ LFQ LQI SNYW+VWATP ++DV+
Sbjct: 897 QEEEREKGKVGFSVYWKCITTAYGGALVPFILLAQILFQALQIGSNYWMVWATPISEDVQ 956
Query: 960 PVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDAT 1019
P V G+TL+ VYV LA+GSSFC+LAR+ LL TAGYKTAT+LFN+MH+CIFRAPMSFFD+T
Sbjct: 957 PPVEGTTLIAVYVGLAIGSSFCILARAILLVTAGYKTATILFNKMHFCIFRAPMSFFDST 1016
Query: 1020 PSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCI 1079
PSGRI+NRASTDQSA D IP + ++AF +I++LG IAVMSQ AWQVF+VF+P + +
Sbjct: 1017 PSGRILNRASTDQSALDTDIPYQIASFAFILIQLLGIIAVMSQAAWQVFVVFIPVIAISV 1076
Query: 1080 WYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSR 1139
YQQYYI SARELSRLVGVCKAP+IQHFAET+SG+TTIRSFDQ+SRF++ NMKL D YSR
Sbjct: 1077 LYQQYYIPSARELSRLVGVCKAPIIQHFAETISGTTTIRSFDQQSRFQETNMKLTDGYSR 1136
Query: 1140 PTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLAT 1199
P F+IA A+EWL RLDMLSSITFAF+L+FLISIP+GFIDP +AGLAVTYGL LN +
Sbjct: 1137 PMFNIAGAVEWLCFRLDMLSSITFAFSLIFLISIPQGFIDPGLAGLAVTYGLNLNIVQGW 1196
Query: 1200 LIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQM 1259
+IW C++ENKIISVERI QYTCIP EP L ++++RP+ SWPS+G++D+ DL+VRYAP +
Sbjct: 1197 MIWNLCNMENKIISVERILQYTCIPCEPSLVVDDNRPDPSWPSYGEVDIQDLKVRYAPHL 1256
Query: 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL 1319
PLVL+G++C F GG KTGIVGRTGSGKSTLIQTLFRIVEP AGQ++ID I+IS IGLHDL
Sbjct: 1257 PLVLRGLTCKFRGGLKTGIVGRTGSGKSTLIQTLFRIVEPTAGQVMIDSINISSIGLHDL 1316
Query: 1320 RSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1379
RSRLSIIPQDP MFEGTVR+NLDPLEE TDE+IWEALDKCQLGDEVRKKEGKLDSKVTEN
Sbjct: 1317 RSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEEIWEALDKCQLGDEVRKKEGKLDSKVTEN 1376
Query: 1380 GENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439
GENWSMGQRQLVCLGRVLLK+SK+L+LDEATASVDTATDNLIQQTLRQHFSD TV+TIAH
Sbjct: 1377 GENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDSTVITIAH 1436
Query: 1440 RITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSFEN 1492
RITSV+DSD+VLLL+ GLIEE+D P LLENKSSSF+QLVAEYT+RS+SSFE
Sbjct: 1437 RITSVLDSDMVLLLSQGLIEEYDTPTRLLENKSSSFAQLVAEYTMRSNSSFEK 1489
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566246|ref|XP_003551345.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2135 bits (5533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1038/1496 (69%), Positives = 1221/1496 (81%), Gaps = 29/1496 (1%)
Query: 8 LLKPIFLRWFSCSLHLVLLVGLLVSWVWNKIK-TGEGDHNRGSRE--MFKNKKALWYKLT 64
+L+PIFL S S+HL LLV + + W+WNK+ T S+E N +K T
Sbjct: 9 ILQPIFLHALSASIHLFLLVSVSLHWLWNKVTFTPPAAREEKSKEEKHRPNSNNTLFKTT 68
Query: 65 LACCFGVSLFNIVFSLLSYFYWYENGWSDYQLVTLLDFGVKTLGWSAICVCLHT----VF 120
+ C VS F+ V L +YFYWY +GWS+ LVT LD +KTL W + V LH F
Sbjct: 69 VFCSLAVSAFSFVLCLFNYFYWYTSGWSEQNLVTFLDLALKTLAWGVVSVSLHNGFSFFF 128
Query: 121 LNSRQPKLPILLKLWWAFYVFISCYCLIVDIVLCEKQVSLQIQYLISDVASAMTGLFLCF 180
++ + W FY+ SCY +V IV+ ++ IQYL+SDV S G F C+
Sbjct: 129 TEKKRFRFSFFFGAWCTFYLVFSCYSFVVGIVVLPER---PIQYLVSDVVSTCAGFFFCY 185
Query: 181 VGILSKIEGEDALLLREPLLKADSNETDGTVPSIK-SEGADKLTPYSRAGVLSVITYSWI 239
V K +G A + EPLL D+N VP+ K ++G D +TP+S AGV SV+T+SW+
Sbjct: 186 VAYFVKNKG-CAKGIEEPLLNGDAN-----VPNEKVAKGGDTVTPFSHAGVFSVLTFSWV 239
Query: 240 NSLIALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGS--GLTTVKLIKAMFC 297
L+A+GNKKTLDLEDVPQLD+ DSV GAF +F++KLE + + +TT+KL+K +
Sbjct: 240 GPLVAVGNKKTLDLEDVPQLDTKDSVVGAFPSFRDKLEADCDANAINSITTLKLVKNLAK 299
Query: 298 SVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECL 357
S WK++L T FL +L TLASYVGPYLID FVQYL+GRR +EN+GYVLV F AK+VECL
Sbjct: 300 SAWKEILFTAFLALLNTLASYVGPYLIDVFVQYLDGRRQYENQGYVLVFVFFFAKIVECL 359
Query: 358 CQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW 417
QR FRLQQ+GIRMRA L+ MIYNK LTLS Q+KQG +SGEIINFMTVDAERV +FSW
Sbjct: 360 SQRHWFFRLQQIGIRMRALLVTMIYNKALTLSCQSKQGHTSGEIINFMTVDAERVGNFSW 419
Query: 418 YIHDPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKD 477
Y+HD W+V +V L++LILYK+LG+AS+AAL TV+VML N+PLG +QE FQ+KLM+SKD
Sbjct: 420 YMHDLWMVALQVVLALLILYKSLGLASIAALVATVVVMLANVPLGSLQEKFQNKLMESKD 479
Query: 478 ERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTF 537
RMKATSEILRNMRILKLQGWEMKFLSK+I LRK E GWLKKYVYT+A+++FVFWGAPTF
Sbjct: 480 TRMKATSEILRNMRILKLQGWEMKFLSKVIELRKTEQGWLKKYVYTAAMTTFVFWGAPTF 539
Query: 538 VSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFC 597
+SV TFGTC+L+ +PLESGK+LSA+ATFR+LQ PIYNLPD ISMI QTKVSL RI+SF C
Sbjct: 540 ISVVTFGTCMLIGIPLESGKILSALATFRILQEPIYNLPDTISMIAQTKVSLDRISSFLC 599
Query: 598 LDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGS 657
LDDL+ D+VEK P GSS+TA++++DG FSWD+SS NP L++IN+KVFHGMRVAVCGTVGS
Sbjct: 600 LDDLRSDVVEKLPRGSSDTAIEVIDGTFSWDLSSPNPKLQNINIKVFHGMRVAVCGTVGS 659
Query: 658 GKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLD 717
GKS+LLSC+LGEVPKISG LK+CGTKAYVAQSPWIQSGKIEDNILFG+ M+RERY VL+
Sbjct: 660 GKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGERMDRERYEKVLE 719
Query: 718 ACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHT 777
ACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD+DIYLFDDPFSAVDAHT
Sbjct: 720 ACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT 779
Query: 778 GSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFME 837
GSHLF+E LLGLLSSKTV+YVTHQVEFLPAADLILVMKDGKITQ GKY DL+NSGTDFME
Sbjct: 780 GSHLFKECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYTDLLNSGTDFME 839
Query: 838 LVGAHEQALLALGSI-EGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKG 896
LVGAH++AL L S+ E ++E ++ E V + + KE E ++ + KG
Sbjct: 840 LVGAHKKALSTLDSLDEVAKSNEISTLEQDVNVSSPHVFKEKEASREE---------PKG 890
Query: 897 QLVQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTK 956
QLVQEEEREKGKVGF VYW YITTA+GGALVPFILLAQ LF+ LQI SNYW+ WATP +
Sbjct: 891 QLVQEEEREKGKVGFLVYWNYITTAYGGALVPFILLAQILFEALQIGSNYWMAWATPIST 950
Query: 957 DVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFF 1016
DV+P V G+TL++VYV LAVGSSFCVL RS LL T GYKTAT+LFN+MH+CIFRAPMSFF
Sbjct: 951 DVEPPVGGTTLIVVYVVLAVGSSFCVLVRSMLLVTVGYKTATILFNKMHFCIFRAPMSFF 1010
Query: 1017 DATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVG 1076
D+TPSGR++NRASTDQS D IP +G++AFS+I++LG IAVMSQVAWQVFIVF+P +
Sbjct: 1011 DSTPSGRVLNRASTDQSTVDTDIPYQIGSFAFSMIQLLGIIAVMSQVAWQVFIVFIPVIA 1070
Query: 1077 SCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDE 1136
IWYQQYYI SARELSRLVGVCKAP+IQHFAET+SG++TIRSFDQ+SRF++ NMKL D
Sbjct: 1071 VSIWYQQYYIPSARELSRLVGVCKAPIIQHFAETISGTSTIRSFDQQSRFQETNMKLTDG 1130
Query: 1137 YSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTL 1196
YSRP F+IA AMEWL RLDMLSSITFAF+L+FLISIP G IDP IAGLAVTYGL LN +
Sbjct: 1131 YSRPKFNIAGAMEWLCFRLDMLSSITFAFSLIFLISIPTGIIDPGIAGLAVTYGLNLNMI 1190
Query: 1197 LATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYA 1256
A +IW C+LENKIISVERI QYT IP EPPL +E++RP+ SWP +G++D+ DLQVRYA
Sbjct: 1191 QAWVIWNLCNLENKIISVERILQYTSIPCEPPLVVEDNRPDPSWPLYGEVDIQDLQVRYA 1250
Query: 1257 PQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL 1316
P +PLVL+G++C F GG KTGIVGRTGSGKSTLIQTLFRIVEP +GQ++ID I+IS IGL
Sbjct: 1251 PHLPLVLRGLTCKFHGGMKTGIVGRTGSGKSTLIQTLFRIVEPTSGQVMIDNINISSIGL 1310
Query: 1317 HDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKV 1376
HDLRSRLSIIPQDP MFEGTVR+NLDPLEE TDEQIWEALDKCQLGDEVRKKEGKLDS V
Sbjct: 1311 HDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSTV 1370
Query: 1377 TENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLT 1436
+ENGENWSMGQRQLVCLGRVLLK+SK+L+LDEATASVDTATDNLIQQTLRQHFSD TV+T
Sbjct: 1371 SENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDSTVIT 1430
Query: 1437 IAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSFEN 1492
IAHRITSV+DSD+VLLL+ GLIEE+D P LLENKSSSF+QLVAEYT+RS SSFE
Sbjct: 1431 IAHRITSVLDSDMVLLLSQGLIEEYDTPTTLLENKSSSFAQLVAEYTMRSKSSFEK 1486
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147800077|emb|CAN75340.1| hypothetical protein VITISV_007527 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2109 bits (5464), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1039/1488 (69%), Positives = 1217/1488 (81%), Gaps = 37/1488 (2%)
Query: 4 GADFLLKPIFLRWFSCSLHLVLLVGLLVSWVWNKIKTGEGDHNRGSREMFKNKKALWYKL 63
G FLL P LR FS S HLVLL+ L VSW KIK G + E K +YK
Sbjct: 6 GIGFLLNPTSLRAFSASFHLVLLLFLFVSWACKKIKMG-------ALENCKRTGFSYYKQ 58
Query: 64 TLACCFGVSLFNIVFSLLSYFYWYENGWSDYQLVTLLDFGVKTLGWSAICVCLHTVFLNS 123
CC G+S+FN+ L+YFYWY+NGWSD QLVTL D ++T W+ +CV LHT FL S
Sbjct: 59 IFVCCLGLSVFNLALFFLNYFYWYKNGWSDEQLVTLSDLALRTFAWATVCVYLHTQFLGS 118
Query: 124 RQPKLPILLKLWWAFYVFISCYCLIVDIVLCEKQVSLQIQYLISDVASAMTGLFLCFVGI 183
+PK P L++WW FY ISCYCL++DIV ++ S IQ+L+ D +TGLFLC++G+
Sbjct: 119 VEPKFPFSLRVWWGFYFSISCYCLVIDIV--KQHQSQPIQFLVPDAVYVITGLFLCYLGL 176
Query: 184 LSKIEGEDALLLREPLLKADSNETDGTVPSIKSEGADKLTPYSRAGVLSVITYSWINSLI 243
K +GE+++L RE LL S V S KS+G + +TP+S AGV S++T+SW+ LI
Sbjct: 177 WGKNQGEESIL-RESLLHG-SASISTRVASNKSKGEETVTPFSNAGVFSLLTFSWMGPLI 234
Query: 244 ALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVKLIKAMFCSVWKDV 303
ALGNKKTLDLEDVPQLD+ +SV G F F++KLE +GG GSG+TT+KL+KAM S W ++
Sbjct: 235 ALGNKKTLDLEDVPQLDAVNSVVGGFPIFRSKLEGDGGGGSGVTTLKLVKAMILSAWAEI 294
Query: 304 LVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRV 363
L++ +LYTLASYVGPYLIDTFVQYLNG+R F+NEGY LVSAF VAKLVECL R
Sbjct: 295 LLSALFALLYTLASYVGPYLIDTFVQYLNGQRQFKNEGYFLVSAFLVAKLVECLSMRHWF 354
Query: 364 FRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPW 423
FRLQQ+GIRMRA L+ IYNK L +S +KQ +SGEIINF++VDAER+ DF WY+HDPW
Sbjct: 355 FRLQQVGIRMRAVLVTKIYNKVLAVSYHSKQCHTSGEIINFISVDAERIGDFGWYMHDPW 414
Query: 424 LVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKAT 483
+V +VAL++LILYKNLG+AS+AA F TVI+ML N+PL + QE FQDKLM+SKD+RMK+T
Sbjct: 415 MVTLQVALALLILYKNLGLASIAAFFATVIIMLANVPLAKFQEKFQDKLMESKDKRMKST 474
Query: 484 SEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATF 543
SEILRNMRILKL G + ETGWLKKYVYT AI++FVFW P FVSV +F
Sbjct: 475 SEILRNMRILKLSGMG----------NENETGWLKKYVYTLAITTFVFWVGPIFVSVVSF 524
Query: 544 GTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQP 603
GT +L+ +PLESGK+LS++ATFR+LQ PIYNLPD ISMI QTKVSL RIASF LDDLQP
Sbjct: 525 GTAMLMGIPLESGKILSSLATFRILQEPIYNLPDTISMIAQTKVSLDRIASFLRLDDLQP 584
Query: 604 DLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLL 663
D+VEK P G+S TA++IV+GNFSWD+SS +PTLKDINL+V HGMRVAVCG VGSGKSSLL
Sbjct: 585 DVVEKLPKGTSSTAIEIVNGNFSWDLSSPHPTLKDINLQVHHGMRVAVCGAVGSGKSSLL 644
Query: 664 SCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKK 723
SCILGEVPKISGTLKL GTKAYVAQSPWIQ GKIE+NILFGKEM+RERY VLDAC+LKK
Sbjct: 645 SCILGEVPKISGTLKLSGTKAYVAQSPWIQGGKIEENILFGKEMDRERYERVLDACTLKK 704
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
DLEIL FGDQTVIGERGINLSGGQKQRIQIARALYQD+DI+LFDDPFSAVDAHTG+HLF+
Sbjct: 705 DLEILPFGDQTVIGERGINLSGGQKQRIQIARALYQDADIFLFDDPFSAVDAHTGTHLFK 764
Query: 784 EVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHE 843
E LLGLL SKTV+YVTHQV MK+G+ITQAGKYND++N G+DF+ELVGA++
Sbjct: 765 ECLLGLLDSKTVVYVTHQV-----------MKEGRITQAGKYNDILNYGSDFVELVGANK 813
Query: 844 QALLALGSIEGRPAS--ERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQE 901
+AL AL SIE +S S + G T + +V + EN GQ + K QLVQE
Sbjct: 814 KALSALESIEAEKSSIMSENSVDTGST---SEVVPKEENRNGQTGNIEGTDGPKAQLVQE 870
Query: 902 EEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPV 961
EEREKGKVGFSVYWKYITTA+GGALVPFILL+Q LFQ+LQI SNYW+ WATP ++DVKP
Sbjct: 871 EEREKGKVGFSVYWKYITTAYGGALVPFILLSQILFQLLQIGSNYWMAWATPVSEDVKPA 930
Query: 962 VTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPS 1021
V GSTL++VYVALA+GSS CVL+R+ L+ TAGY+TAT+LFN+MH IFRAPMSFFDATPS
Sbjct: 931 VGGSTLILVYVALAIGSSLCVLSRAMLVVTAGYRTATILFNKMHLSIFRAPMSFFDATPS 990
Query: 1022 GRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWY 1081
GRI+NRASTDQSA D+ IP ++ AFS I++LG IAVMSQV WQVFIVFVP + +CIWY
Sbjct: 991 GRILNRASTDQSAVDMDIPMVIWKCAFSFIQLLGIIAVMSQVVWQVFIVFVPMIATCIWY 1050
Query: 1082 QQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPT 1141
Q+YYISSAREL+RLVGVCKAPVIQHF+ET+SGSTTIRSFDQESRFRD NMKL+D Y+RP
Sbjct: 1051 QRYYISSARELARLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLIDGYTRPK 1110
Query: 1142 FHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLI 1201
F+ AAAMEWL RLD+LSSITFAF+LVFLISIP+G IDP IAGLAVTYGL LNTL A ++
Sbjct: 1111 FNSAAAMEWLCFRLDVLSSITFAFSLVFLISIPEGAIDPGIAGLAVTYGLNLNTLQAWVV 1170
Query: 1202 WFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPL 1261
W C++ENKIISVER+ QYT IPSEPPL +E ++P SWPSHG++D+ DLQVRYAP +PL
Sbjct: 1171 WNLCNMENKIISVERMLQYTSIPSEPPLVMEGNKPACSWPSHGEVDIRDLQVRYAPHLPL 1230
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
VL+G++C FPGG KTGIVGRTGSGKSTLIQTLFRIVEP AG+I+IDG +ISLIGLHDLRS
Sbjct: 1231 VLRGLTCNFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIMIDGTNISLIGLHDLRS 1290
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1381
RLSIIPQDP MFEGTVRSNLDPLEE +DEQIWEALDKCQLGDEVRKKEGKLDS V ENGE
Sbjct: 1291 RLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWEALDKCQLGDEVRKKEGKLDSAVNENGE 1350
Query: 1382 NWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRI 1441
NWSMGQRQLVCLGRVLLK+SK+L+LDEATASVDTATDNLIQQTLRQHF D TV+TIAHRI
Sbjct: 1351 NWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFVDSTVITIAHRI 1410
Query: 1442 TSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSS 1489
TSV+DSD+VLLL+HGLIEE D PA LLENKSSSF++LVAEYT+RS S+
Sbjct: 1411 TSVLDSDMVLLLDHGLIEEHDTPARLLENKSSSFAKLVAEYTVRSKSN 1458
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465513|ref|XP_004150472.1| PREDICTED: ABC transporter C family member 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2100 bits (5441), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1018/1490 (68%), Positives = 1203/1490 (80%), Gaps = 14/1490 (0%)
Query: 4 GADFLLKPIFLRWFSCSLHLVLLVGLLVSWVWNKIKTGEGDHNRGSREMFKNKKALWYKL 63
A FLL+P S HLVLL+ WV K K G G+ +L+ K
Sbjct: 23 AAHFLLEPSLAHGLSGLAHLVLLLAFCFLWVCFKFKAGCGERQ-------TETGSLYVKG 75
Query: 64 TLACCFGVSLFNIVFSLLSYFYWYENGWSDYQLVTLLDFGVKTLGWSAICVCLHTVFLNS 123
T CC +S++N+VF L FYWY NGWS+ LVTLLDFG+K L W + CLH+
Sbjct: 76 TFMCCLVISVYNLVFLSLDCFYWYRNGWSEGFLVTLLDFGLKALAWGTVSFCLHSQVSKI 135
Query: 124 RQPKLPILLKLWWAFYVFISCYCLIVDIVLCEKQVSLQIQYLISDVASAMTGLFLCFVGI 183
+ K I L++WW Y +SCYCL VD V + SL I+YL+SDV S + GL + +VG
Sbjct: 136 GKLKFAIHLRVWWVSYFAVSCYCLTVDSVHYSQTHSLPIRYLVSDVISVVFGLLIVYVGF 195
Query: 184 LSK-IEGEDALLLREPLLKADSNET---DGTVPSIKSEGADKLTPYSRAGVLSVITYSWI 239
K + +D L E LL ++ T +G+V +G + +TPY AG+ S++++SW+
Sbjct: 196 FVKSVSEQDPL--EEHLLNGETRYTTLSNGSVELKNCKGEETVTPYETAGIFSILSFSWM 253
Query: 240 NSLIALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVKLIKAMFCSV 299
LIA G KK LDLED+PQL S D+VSG F +NKLE+E G + +TT+ L K + +
Sbjct: 254 GPLIATGKKKALDLEDIPQLASRDAVSGTFQILRNKLESECGTINRVTTLSLAKCLLYTA 313
Query: 300 WKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQ 359
WK++L+T +YTLA+YVGPYLIDTFVQYLNG RDFENEGYVL F +AKLVECL
Sbjct: 314 WKEILLTAVFAFIYTLATYVGPYLIDTFVQYLNGHRDFENEGYVLACVFFLAKLVECLAM 373
Query: 360 RFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYI 419
R FR+QQ+GIR+RAAL+AMIYNKGLTLS Q++Q +SGEIINFMTVDAERV DFSWY+
Sbjct: 374 RHWFFRVQQVGIRVRAALVAMIYNKGLTLSCQSRQQHTSGEIINFMTVDAERVGDFSWYM 433
Query: 420 HDPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDER 479
HD WLV+F+V L++L+LYKNLG+AS++A T+ +ML+NIPLG++QE FQDK+M+SKD R
Sbjct: 434 HDVWLVVFQVGLALLVLYKNLGLASISAFVATIAIMLINIPLGKLQEKFQDKIMESKDTR 493
Query: 480 MKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVS 539
MKATSEILRNMRILKLQGWEMKFLSKI LR E GWLKK++YT ++++FVFWGAPTFVS
Sbjct: 494 MKATSEILRNMRILKLQGWEMKFLSKISELRNIEAGWLKKFLYTLSVTTFVFWGAPTFVS 553
Query: 540 VATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLD 599
V TFGTC+L+ +PLESGK+LSA+ATFR+LQ PIYNLPD ISM++QTKVSL RI +F LD
Sbjct: 554 VITFGTCMLVGIPLESGKVLSALATFRILQEPIYNLPDTISMVVQTKVSLDRIVAFLRLD 613
Query: 600 DLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGK 659
DLQ D++E+ P GSS TA++IV+GNFSWD SS N TL+DIN KV HGMRVAVCGTVGSGK
Sbjct: 614 DLQADIIERVPRGSSTTAVEIVNGNFSWDSSSSNLTLRDINFKVEHGMRVAVCGTVGSGK 673
Query: 660 SSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC 719
SSLLSCILGEVPK SG L++CG+KAYVAQSPWIQSGKIEDNILF KEM+RERY VL+AC
Sbjct: 674 SSLLSCILGEVPKTSGNLRVCGSKAYVAQSPWIQSGKIEDNILFSKEMDRERYKRVLEAC 733
Query: 720 SLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGS 779
L+KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD DIYLFDDPFSAVDAHTGS
Sbjct: 734 CLEKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDVDIYLFDDPFSAVDAHTGS 793
Query: 780 HLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELV 839
HLF+E LLG+LSSKTVIYVTHQVEFLPAADLILVMKDG+ITQAGKY +++ SGTDFM LV
Sbjct: 794 HLFKECLLGVLSSKTVIYVTHQVEFLPAADLILVMKDGRITQAGKYEEILRSGTDFMALV 853
Query: 840 GAHEQALLALG-SIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQL 898
GAHE+AL A+ S+EG + S E+ + N I E + + Q+ +A + + SKGQL
Sbjct: 854 GAHEEALSAINSSVEGDSSKNSTSKEDESVISTNGITHEDDKSDIQDGRAVDASKSKGQL 913
Query: 899 VQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDV 958
VQEEEREKGKVGF VYWKYI +A+GGALVP IL Q LFQILQI SNYW+ WATP ++D+
Sbjct: 914 VQEEEREKGKVGFPVYWKYIKSAYGGALVPIILFGQVLFQILQIGSNYWMAWATPVSEDM 973
Query: 959 KPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDA 1018
+P V+ S L+IVYVAL+VGSS CVL RS LL TAG+K AT LF +MH IFRAPMSFFDA
Sbjct: 974 EPPVSTSRLIIVYVALSVGSSLCVLLRSALLVTAGFKAATELFVKMHTSIFRAPMSFFDA 1033
Query: 1019 TPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSC 1078
TPSGRI+NRASTDQS D+ IP V ++ F++I+++G IAVMSQVAWQVFI+F+P + C
Sbjct: 1034 TPSGRILNRASTDQSTLDMDIPFRVASFCFNVIQLVGIIAVMSQVAWQVFIIFIPVMAVC 1093
Query: 1079 IWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYS 1138
IWY+Q+YI SARELSRL+GVCKAPVIQ F+ET+SGSTTIRSFDQESRF+D NMKL D YS
Sbjct: 1094 IWYEQHYIPSARELSRLIGVCKAPVIQLFSETISGSTTIRSFDQESRFQDTNMKLTDAYS 1153
Query: 1139 RPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLA 1198
RP FH AAAMEWL RLD+LSSITFA +L+FLISIP G IDP IAGL+VTYGL LN L A
Sbjct: 1154 RPKFHTAAAMEWLCFRLDLLSSITFASSLIFLISIPVGVIDPGIAGLSVTYGLNLNMLQA 1213
Query: 1199 TLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQ 1258
LIW C++ENKIISVERIFQYT IPSEPPL IEE+RP+ SWP+ G+I+L +LQVRYAPQ
Sbjct: 1214 WLIWNLCNMENKIISVERIFQYTSIPSEPPLVIEENRPDRSWPAFGEIELHNLQVRYAPQ 1273
Query: 1259 MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD 1318
+PLVL+G++CTFPGG+KTGIVGRTGSGKSTLIQTLFRIV+P AG I+ID I+I+ IGLHD
Sbjct: 1274 LPLVLRGVTCTFPGGKKTGIVGRTGSGKSTLIQTLFRIVDPVAGHIVIDNINITTIGLHD 1333
Query: 1319 LRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1378
LRS+LSIIPQDP MFEGTVRSNLDPLEE DE IWEALDKCQLGDEVRKKEGKLDS V+E
Sbjct: 1334 LRSKLSIIPQDPTMFEGTVRSNLDPLEEYADEDIWEALDKCQLGDEVRKKEGKLDSTVSE 1393
Query: 1379 NGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIA 1438
NGENWSMGQRQLVCLGRVLLK+SK+L+LDEATASVDTATDNLIQQTLRQHFSDCTV+TIA
Sbjct: 1394 NGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIA 1453
Query: 1439 HRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSS 1488
HRITSV+ SD+VLLL+HGLIEE+D P LLE+K+SSFSQLVAEYT RS S
Sbjct: 1454 HRITSVLSSDMVLLLSHGLIEEYDTPTRLLEDKASSFSQLVAEYTQRSGS 1503
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1496 | ||||||
| TAIR|locus:2090029 | 1514 | ABCC3 "ATP-binding cassette C3 | 0.987 | 0.976 | 0.663 | 0.0 | |
| TAIR|locus:2090049 | 1493 | ABCC7 "ATP-binding cassette C7 | 0.983 | 0.985 | 0.611 | 0.0 | |
| TAIR|locus:2090039 | 1466 | ABCC6 "ATP-binding cassette C6 | 0.845 | 0.862 | 0.652 | 0.0 | |
| TAIR|locus:2020235 | 1514 | ABCC5 "ATP-binding cassette C5 | 0.520 | 0.514 | 0.476 | 0.0 | |
| TAIR|locus:2043268 | 1516 | ABCC4 "ATP-binding cassette C4 | 0.945 | 0.933 | 0.405 | 9.4e-288 | |
| TAIR|locus:2081755 | 1539 | ABCC14 "ATP-binding cassette C | 0.495 | 0.482 | 0.394 | 6.4e-287 | |
| TAIR|locus:2077750 | 1453 | ABCC10 "ATP-binding cassette C | 0.590 | 0.608 | 0.374 | 1.6e-286 | |
| DICTYBASE|DDB_G0284867 | 1593 | abcC8 "ABC transporter C famil | 0.393 | 0.369 | 0.380 | 7.5e-223 | |
| UNIPROTKB|E1C6S5 | 1552 | ABCC2 "Uncharacterized protein | 0.387 | 0.373 | 0.384 | 2.5e-211 | |
| ZFIN|ZDB-GENE-040426-1523 | 1567 | abcc2 "ATP-binding cassette, s | 0.410 | 0.391 | 0.376 | 5.3e-209 |
| TAIR|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5147 (1816.9 bits), Expect = 0., P = 0.
Identities = 990/1491 (66%), Positives = 1199/1491 (80%)
Query: 7 FLLKPIFLRWFSCSXXXXXXXXXXXSWVWNKIKTGEGDHNRGSREMFKNKKALWYKLTLA 66
FLLKP+FLRW S SWV KI+ GD G E K+++ +K L
Sbjct: 31 FLLKPLFLRWLSGFLHSVLLLVLFFSWVRKKIR---GDS--GVTESLKDRRDFGFKSALF 85
Query: 67 CCFGVSLFNIVFSLLSYFYWYENGWSDY-QLVTLLDFGVKTLGWSAICVCLHTVFLNSRQ 125
C +SL N+V LS FYWYE+GW D QLV+ L F + + W + +CLH +
Sbjct: 86 CSLALSLLNLVLMSLSGFYWYESGWLDNEQLVSSLGFLLGMVSWGVLSICLHRC-RDCEH 144
Query: 126 PKLPILLKLWWAFYVFISCYCLIVDIVLCEKQVSLQIQYLISDVASAMTGLFLCFVGILS 185
K P LL+LW FY+ +SCY L+VD V+ E++ ++ + L+ D+ + + +FL +V +L
Sbjct: 145 KKAPFLLRLWLVFYLVVSCYSLVVDFVMYERRETVPVHLLVFDIVAFIAAVFLGYVAVLK 204
Query: 186 KIEGEDALLLREPLLKADSNETDG--TVPSIKSEGADKLTPYSRAGVLSVITYSWINSLI 243
K +L EPLL + G +V K+ G+ + TPYSRAG+LS++T+SW++ LI
Sbjct: 205 KDRSNSNGVLEEPLLNGGDSRVGGDDSVELNKTNGSGEATPYSRAGILSLLTFSWMSPLI 264
Query: 244 ALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLET-EGGVGSGLTTVKLIKAMFCSVWKD 302
+GNKKTLDLEDVPQL DSV G F++ LE+ +GG SG+TT KLIKA++ + +
Sbjct: 265 DIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLESPDGGERSGVTTFKLIKALYFTAQWE 324
Query: 303 VLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFR 362
+LVT F +YT+ASYVGP LIDTFVQYLNGRR + +EGYVLV F AK+VECL QR
Sbjct: 325 ILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYNHEGYVLVITFFAAKIVECLSQRHW 384
Query: 363 VFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDP 422
FRLQ++GIRMR+AL+AMIY KGLTLS Q+KQG++SGEIINFMTVDAER+ +FSWY+HDP
Sbjct: 385 FFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTSGEIINFMTVDAERIGNFSWYMHDP 444
Query: 423 WLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKA 482
W+VL +V L++ ILY+NLG+AS+AAL T+IVML+N P GR+QE FQ+KLM++KD RMK+
Sbjct: 445 WMVLLQVGLALWILYRNLGLASIAALVATIIVMLINFPFGRMQERFQEKLMEAKDSRMKS 504
Query: 483 TSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVAT 542
TSEILRNMRILKLQGWEMKFLSKI +LRK E GWLKKYVY SA+ SFVFWGAPT VSV+T
Sbjct: 505 TSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLKKYVYNSAVISFVFWGAPTLVSVST 564
Query: 543 FGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQ 602
FG CILL +PLESGK+LSA+ATFR+LQ PIYNLPD ISMI+QTKVSL R+AS+ CLD+LQ
Sbjct: 565 FGACILLGIPLESGKILSALATFRILQEPIYNLPDTISMIVQTKVSLDRLASYLCLDNLQ 624
Query: 603 PDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSL 662
PD+VE+ P GSS+ A+++++ SWD+SS NPTLKDIN KVF GM+VAVCGTVGSGKSSL
Sbjct: 625 PDIVERLPKGSSDVAVEVINSTLSWDVSSSNPTLKDINFKVFPGMKVAVCGTVGSGKSSL 684
Query: 663 LSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLK 722
LS +LGEVPK+SG+LK+CGTKAYVAQSPWIQSGKIEDNILFGK M RERY+ VL+ACSL
Sbjct: 685 LSSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGKIEDNILFGKPMERERYDKVLEACSLS 744
Query: 723 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLF 782
KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD+DIYLFDDPFSAVDAHTGSHLF
Sbjct: 745 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 804
Query: 783 QEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAH 842
+EVLLGLL SK+VIYVTHQVEFLPAADLILVMKDG+I+QAGKYND++NSGTDFMEL+GAH
Sbjct: 805 KEVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDGRISQAGKYNDILNSGTDFMELIGAH 864
Query: 843 EQALLALGSIEGRPASERASGENGGTVIANRIV--KEVENNKGQNDKADEVAVSKGQLVQ 900
++AL + S++ SE+++ ++ + I +++E+ +NDK + V + Q++Q
Sbjct: 865 QEALAVVDSVDANSVSEKSALGQENVIVKDAIAVDEKLESQDLKNDKLESVEPQR-QIIQ 923
Query: 901 EEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKP 960
EEEREKG V VYWKYIT A+GGALVPFILL Q LFQ+LQI SNYW+ WATP ++DV+
Sbjct: 924 EEEREKGSVALDVYWKYITLAYGGALVPFILLGQVLFQLLQIGSNYWMAWATPVSEDVQA 983
Query: 961 VVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATP 1020
V STL+IVYVALA GSS C+L R+TLL TAGYKTAT LF++MH+CIFR+PMSFFD+TP
Sbjct: 984 PVKLSTLMIVYVALAFGSSLCILLRATLLVTAGYKTATELFHKMHHCIFRSPMSFFDSTP 1043
Query: 1021 SGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIW 1080
SGRI++RASTDQSA DL +P G+ A ++I+++G I VMSQV+W VF+VF+P V + IW
Sbjct: 1044 SGRIMSRASTDQSAVDLELPYQFGSVAITVIQLIGIIGVMSQVSWLVFLVFIPVVAASIW 1103
Query: 1081 YQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRP 1140
YQ+YYI++ARELSRLVGVCKAP+IQHF+ET+SG+TTIRSF QE RFR NM+L D YSRP
Sbjct: 1104 YQRYYIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSRP 1163
Query: 1141 TFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATL 1200
F+ A AMEWL RLDMLSS+TF F+LVFL+SIP G IDP++AGLAVTYGL+LNTL A L
Sbjct: 1164 KFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDPSLAGLAVTYGLSLNTLQAWL 1223
Query: 1201 IWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMP 1260
IW C+LENKIISVERI QY +PSEPPL IE +RP SWPS G++++ DLQVRYAP MP
Sbjct: 1224 IWTLCNLENKIISVERILQYASVPSEPPLVIESNRPEQSWPSRGEVEIRDLQVRYAPHMP 1283
Query: 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXR 1320
LVL+GI+CTF GG +TGIVGRTGSGKSTLIQTLFRIVEP+A R
Sbjct: 1284 LVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTLFRIVEPSAGEIRIDGVNILTIGLHDLR 1343
Query: 1321 SRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380
RLSIIPQDP MFEGT+RSNLDPLEE TD+QIWEALDKCQLGDEVRKKE KLDS V+ENG
Sbjct: 1344 LRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIWEALDKCQLGDEVRKKEQKLDSSVSENG 1403
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHR 1440
+NWSMGQRQLVCLGRVLLKRSKIL+LDEATASVDTATDNLIQ+TLR+HFSDCTV+TIAHR
Sbjct: 1404 DNWSMGQRQLVCLGRVLLKRSKILVLDEATASVDTATDNLIQKTLREHFSDCTVITIAHR 1463
Query: 1441 ITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSFE 1491
I+SVIDSD+VLLL++G+IEE+D P LLE+KSSSFS+LVAEYT RSSSSF+
Sbjct: 1464 ISSVIDSDMVLLLSNGIIEEYDTPVRLLEDKSSSFSKLVAEYTSRSSSSFD 1514
|
|
| TAIR|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4627 (1633.8 bits), Expect = 0., P = 0.
Identities = 908/1486 (61%), Positives = 1117/1486 (75%)
Query: 7 FLLKPIFLRWFSCSXXXXXXXXXXXSWVWNKIKTGEGDHNRGSREMFKNKKALWYKLTLA 66
FLL+ + FS S V+ K + G + + + E FK+ + KL +
Sbjct: 14 FLLESNYFPMFSIFFNLLLLLVMFGSCVYKK-RLGWENSDAFTNERFKDMSLTYNKLVVI 72
Query: 67 CCFGVSLFNIVFSLLSYFYWYENGWSDYQLVTLLDFGVKTLGWSAICVCLHTVFLNSRQP 126
CC +S N V LLS F ++NGW +L+ LLD L W AI + + F S
Sbjct: 73 CCETLSALNSVLLLLSCFNLHKNGWDRSELMILLDLLFTALSWGAISFYIRSQFTYSHDQ 132
Query: 127 KLPILLKLWWAFYVFISCYCLIVDIVLCEKQVSLQIQYLISDVASAMTGLFLCFVGILSK 186
K PILL++WW Y SCY L+VDI L +KQ + + L+SDV + GLFLC+ + +
Sbjct: 133 KFPILLRVWWVLYFMFSCYRLLVDIALYKKQELVSVHLLLSDVLAVSVGLFLCYSCLQKQ 192
Query: 187 IEGEDA-LLLREPLLKADSNETDGTVPSIKSEGADKLTPYSRAGVLSVITYSWINSLIAL 245
+GE LLL EPLL + +V K+E + +TP+S AG LS +++SW++ LI L
Sbjct: 193 GQGERINLLLEEPLLNGAESSAATSVQLDKAEDDEVVTPFSNAGFLSHVSFSWMSPLIVL 252
Query: 246 GNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVKLIKAMFCSVWKDVLV 305
GN+K +D EDVPQ+D+ D F F++KLE + G +TT KLIKA+F SVW+D+L+
Sbjct: 253 GNEKIIDSEDVPQVDNSDRAEKLFWIFRSKLEWDDGERR-ITTYKLIKALFFSVWRDILL 311
Query: 306 TGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFR 365
+ +YT++ YV PYL+DTFVQYLNG+R + N+G VLV+ F VAKLVEC +R FR
Sbjct: 312 STLFAFVYTVSCYVAPYLMDTFVQYLNGQRQYSNQGVVLVTTFFVAKLVECQARRNWYFR 371
Query: 366 LQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWLV 425
LQ+ GI MR+ L++MIY KGLTL +KQG +SGEIIN MTVDAER++ FSWY+HDPW++
Sbjct: 372 LQKAGIGMRSVLVSMIYEKGLTLPCYSKQGHTSGEIINLMTVDAERISAFSWYMHDPWIL 431
Query: 426 LFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSE 485
+ +++L++LILY++LG+ S+AA T +VML NIPL +++E FQ LM+SKD RMK TSE
Sbjct: 432 VLQISLALLILYRSLGLGSIAAFAATFLVMLGNIPLAKLEEKFQGNLMESKDNRMKKTSE 491
Query: 486 ILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATFGT 545
L NMRILKLQGWEMKFL KI++LR E GWLKK+VY SA S V W AP+FVS FG
Sbjct: 492 ALLNMRILKLQGWEMKFLHKILDLRGIEAGWLKKFVYNSAAISSVLWAAPSFVSATAFGA 551
Query: 546 CILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDL 605
C+LL +PLESGK+++A+ATFR+LQ PIY LPD ISMI+QTKVSL RIA+F CLDDLQ D
Sbjct: 552 CMLLKIPLESGKIIAALATFRILQTPIYKLPDTISMIVQTKVSLDRIATFLCLDDLQQDG 611
Query: 606 VEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSC 665
+E+ PSGSS+ +++ +G FSWD SS PTLKDI K+ HGM +A+CGTVGSGKSSLLS
Sbjct: 612 MERLPSGSSKMDVEVSNGAFSWDDSSPIPTLKDIRFKIPHGMNIAICGTVGSGKSSLLSS 671
Query: 666 ILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDL 725
ILGEVPKISG LK+CG KAY+AQSPWIQSGK+E+NILFGK M RE Y VL+ACSL KDL
Sbjct: 672 ILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENILFGKPMQREWYQRVLEACSLNKDL 731
Query: 726 EILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV 785
E+ F DQTVIGERGINLSGGQKQRIQIARALYQD+DIYLFDDPFSAVDAHTGSHLF+EV
Sbjct: 732 EVFPFRDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV 791
Query: 786 LLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQA 845
LLGLL +KTVIYVTHQ+EFLP ADLILVMKDG+ITQAGKYN+++ SGTDFMELVGAH A
Sbjct: 792 LLGLLRNKTVIYVTHQLEFLPEADLILVMKDGRITQAGKYNEILESGTDFMELVGAHTDA 851
Query: 846 LLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEERE 905
L A+ S E AS +++ KE + + + + +++ KGQLVQEEERE
Sbjct: 852 LAAVDSYEKGSASAQSTTS-----------KESKVSNDEEKQEEDLPSPKGQLVQEEERE 900
Query: 906 KGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGS 965
KGKVGF+VY KY+ A+GGALVP IL+ Q LFQ+L I SNYW+ W TP +KDVKP+V+GS
Sbjct: 901 KGKVGFTVYQKYMKLAYGGALVPIILVVQILFQVLNIGSNYWMAWVTPVSKDVKPLVSGS 960
Query: 966 TLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRII 1025
TL++VYV LA SSFC+L R+ L A G+K AT LFN+MH+ IFRA MSFFDATP GRI+
Sbjct: 961 TLILVYVFLATASSFCILVRAMLSAMTGFKIATELFNQMHFRIFRASMSFFDATPIGRIL 1020
Query: 1026 NRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYY 1085
NRASTDQSA DL +PS A + + ILG I VM QVAWQV IVF+P + +C WY+QYY
Sbjct: 1021 NRASTDQSAVDLRLPSQFSNLAIAAVNILGIIGVMGQVAWQVLIVFIPVIAACTWYRQYY 1080
Query: 1086 ISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIA 1145
IS+AREL+RL G+ ++P++QHF+ET+SG TTIRSFDQE RFR M+L D YSR FH
Sbjct: 1081 ISAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYSRLRFHAI 1140
Query: 1146 AAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFAC 1205
+AMEWL RLD+LS++ FA +LV L+S+P+G I+P+ AGLAVTY L LN+L ATLIW C
Sbjct: 1141 SAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAGLAVTYALNLNSLQATLIWTLC 1200
Query: 1206 DLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQG 1265
DLENK+ISVER+ QY IPSEP L IE +RP SWP G+I + +LQVRY P +P+VL+G
Sbjct: 1201 DLENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRGEITICNLQVRYGPHLPMVLRG 1260
Query: 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSRLSI 1325
++CTF GG KTGIVGRTG GKSTLIQTLFRIVEPAA RSRLSI
Sbjct: 1261 LTCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILTIGLHDLRSRLSI 1320
Query: 1326 IPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1385
IPQ+P MFEGTVRSNLDPLEE D+QIWEALDKCQLGDE+RKKE KLDS V+ENG+NWS+
Sbjct: 1321 IPQEPTMFEGTVRSNLDPLEEYADDQIWEALDKCQLGDEIRKKELKLDSPVSENGQNWSV 1380
Query: 1386 GQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVI 1445
GQRQLVCLGRVLLKRSK+L+LDEATASVDTATD LIQ+TLRQHFS CTV+TIAHRI+SVI
Sbjct: 1381 GQRQLVCLGRVLLKRSKVLILDEATASVDTATDTLIQETLRQHFSGCTVITIAHRISSVI 1440
Query: 1446 DSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSFE 1491
DSD+VLLL+ GLIEE D+PA LLE+KSSSFS+LVAEYT S S F+
Sbjct: 1441 DSDMVLLLDQGLIEEHDSPARLLEDKSSSFSKLVAEYTASSDSRFK 1486
|
|
| TAIR|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4315 (1524.0 bits), Expect = 0., P = 0.
Identities = 833/1277 (65%), Positives = 1016/1277 (79%)
Query: 213 SIKSEGADKLT-PYSRAGVLSVITYSWINSLIALGNKKTLDLEDVPQLDSGDSVSGAFAN 271
S +S +++T P+S+AG+LS +++SW++ LI LGN+K +D++DVPQLD D+ F
Sbjct: 196 SAESSDNEEVTAPFSKAGILSRMSFSWMSPLITLGNEKIIDIKDVPQLDRSDTTESLFWI 255
Query: 272 FKNKLETEGGVGSGLTTVKLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYL 331
F++KLE + G +TT KLIKA+F SVW+D++++ L +YT++ YV PYL+D FVQYL
Sbjct: 256 FRSKLEWDDGERR-ITTFKLIKALFLSVWRDIVLSALLAFVYTVSCYVAPYLMDNFVQYL 314
Query: 332 NGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQ 391
NG R ++N+GYVLV+ F VAKLVEC QR FR Q+ G+ MR+ L++MIY KGLTL
Sbjct: 315 NGNRQYKNQGYVLVTTFFVAKLVECQTQRQWFFRGQKAGLGMRSVLVSMIYEKGLTLPCH 374
Query: 392 AKQGQSSGEIINFMTVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGT 451
+KQG +SGEIIN M VDA+R++ FSW++HDPW+++ +V+L++ ILYK+LG+ S+AA T
Sbjct: 375 SKQGHTSGEIINLMAVDADRISAFSWFMHDPWILVLQVSLALWILYKSLGLGSIAAFPAT 434
Query: 452 VIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRK 511
++VML N P +++E FQ LMKSKD RMK TSE+L NM+ILKLQGWEMKFLSKI+ LR
Sbjct: 435 ILVMLANYPFAKLEEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGWEMKFLSKILELRH 494
Query: 512 RETGWLKKYVYTSAISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVP 571
E GWLKK+VY S+ + V W AP+F+S FG C+LL +PLESGK+L+A+ATFR+LQ P
Sbjct: 495 IEAGWLKKFVYNSSAINSVLWAAPSFISATAFGACLLLKIPLESGKILAALATFRILQGP 554
Query: 572 IYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISS 631
IY LP+ ISMI+QTKVSL RIASF CLDDLQ D+V + PSGSSE A++I +G FSWD SS
Sbjct: 555 IYKLPETISMIVQTKVSLNRIASFLCLDDLQQDVVGRLPSGSSEMAVEISNGTFSWDDSS 614
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 691
PTL+D+N KV GM VA+CGTVGSGKSSLLS ILGEVPKISG LK+CG KAY+AQSPW
Sbjct: 615 PIPTLRDMNFKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPW 674
Query: 692 IQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751
IQSGK+E+NILFGK M RE Y+ VL+ACSL KDLEIL F DQTVIGERGINLSGGQKQRI
Sbjct: 675 IQSGKVEENILFGKPMEREWYDRVLEACSLNKDLEILPFHDQTVIGERGINLSGGQKQRI 734
Query: 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLI 811
QIARALYQD+DIYLFDDPFSAVDAHTGSHLF+EVLLGLL KTVIYVTHQVEFLP ADLI
Sbjct: 735 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLI 794
Query: 812 LVMKDGKITQAGKYNDLINSGTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIA 871
LVMKDGKITQAGKY+++++SGTDFMELVGAH +AL + S E ASE+++ + V+
Sbjct: 795 LVMKDGKITQAGKYHEILDSGTDFMELVGAHTEALATIDSCETGYASEKSTTDKENEVLH 854
Query: 872 NRIVKEVENNKGQNDKADEVAVSKGQLVQEEEREKGKVGFSVYWKYITTAFGGALVPFIL 931
+ KE + N G ++K GQLVQEEEREKGKVGF+VY KY+ A+GGA++P IL
Sbjct: 855 H---KEKQEN-GSDNKPS------GQLVQEEEREKGKVGFTVYKKYMALAYGGAVIPLIL 904
Query: 932 LAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLAT 991
+ Q LFQ+L I SNYW+ W TP +KDV+P V+G TL++VYV LAV SSFC+L R+ L+A
Sbjct: 905 VVQVLFQLLSIGSNYWMTWVTPVSKDVEPPVSGFTLILVYVLLAVASSFCILIRALLVAM 964
Query: 992 AGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSII 1051
G+K AT LF +MH IFRA MSFFDATP GRI+NRASTDQS ADL +P A + I
Sbjct: 965 TGFKMATELFTQMHLRIFRASMSFFDATPMGRILNRASTDQSVADLRLPGQFAYVAIAAI 1024
Query: 1052 RILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETV 1111
ILG I V+ QVAWQV IVF+P V +C WY+QYYIS+AREL+RL G+ ++PV+ HF+ET+
Sbjct: 1025 NILGIIGVIVQVAWQVLIVFIPVVAACAWYRQYYISAARELARLAGISRSPVVHHFSETL 1084
Query: 1112 SGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLI 1171
SG TTIRSFDQE RFR M+L D YSR FH AMEWL RL++LS+ FA +LV L+
Sbjct: 1085 SGITTIRSFDQEPRFRGDIMRLSDCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLVILV 1144
Query: 1172 SIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAI 1231
S P+G I+P++AGLA+TY L LNTL ATLIW CDLENK+ISVER+ QYT IPSEPPL I
Sbjct: 1145 SAPEGVINPSLAGLAITYALNLNTLQATLIWTLCDLENKMISVERMLQYTNIPSEPPLVI 1204
Query: 1232 EESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQ 1291
E +RP SWPS G+I + +LQVRY P +P+VL G++CTFPGG KTGIVGRTG GKSTLIQ
Sbjct: 1205 ETTRPEKSWPSRGEITICNLQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKSTLIQ 1264
Query: 1292 TLFRIVEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQ 1351
TLFRIVEPAA RSRLSIIPQDP MFEGT+RSNLDPLEE TD+Q
Sbjct: 1265 TLFRIVEPAAGEIRIDGINILSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTDDQ 1324
Query: 1352 IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATA 1411
IWEALD CQLGDEVRKKE KLDS V+ENG+NWS+GQRQLVCLGRVLLKRSK+L+LDEATA
Sbjct: 1325 IWEALDNCQLGDEVRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKLLVLDEATA 1384
Query: 1412 SVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENK 1471
S+DTATDNLIQ+TLR HF+DCTV+TIAHRI+SVIDSD+VLLL+ GLI+E D+PA LLE++
Sbjct: 1385 SIDTATDNLIQETLRHHFADCTVITIAHRISSVIDSDMVLLLDQGLIKEHDSPARLLEDR 1444
Query: 1472 SSSFSQLVAEYTLRSSS 1488
SS FS+LVAEYT S S
Sbjct: 1445 SSLFSKLVAEYTTSSES 1461
|
|
| TAIR|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1851 (656.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 388/815 (47%), Positives = 537/815 (65%)
Query: 61 YKLTLACCF---GVSLFNIVFSLLSYFYWYENGWSDYQLVTLLDFGVKTLGWSAIC-VCL 116
+ L+L CC GV + +V+ + SD+ ++ ++L W + + L
Sbjct: 78 FNLSLLCCLYVLGVQVLVLVYDGVKV----RREVSDWFVLCFP--ASQSLAWFVLSFLVL 131
Query: 117 HTVFLNSRQPKLPILLKLWWAFYVFISCYC-LIVD-IVLCEKQVSLQIQYLISDVASAMT 174
H + +S KLP L+++WW F F C C + VD L + S ++++++A
Sbjct: 132 HLKYKSSE--KLPFLVRIWW-FLAFSICLCTMYVDGRRLAIEGWSRCSSHVVANLAVTPA 188
Query: 175 GLFLCFVGI--LSKIE-GEDALLLREPLLKADSNETDGTVPSIKSEGAD-KLTPYSRAGV 230
FLCF+ +S I+ + L+EPLL ++ E A K+TPYS AG+
Sbjct: 189 LGFLCFLAWRGVSGIQVTRSSSDLQEPLL-------------VEEEAACLKVTPYSTAGL 235
Query: 231 LSVITYSWINSLIALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVK 290
+S+IT SW++ L++ G+K+ L+L+D+P L D ++ K+ +
Sbjct: 236 VSLITLSWLDPLLSAGSKRPLELKDIPLLAPRDRAKSSYKVLKSNWKRCKSENPSKPP-S 294
Query: 291 LIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCV 350
L +A+ S WK+ L TL SYVGPYLI FV YL G+ F +EGYVL F
Sbjct: 295 LARAIMKSFWKEAACNAVFAGLNTLVSYVGPYLISYFVDYLGGKEIFPHEGYVLAGIFFT 354
Query: 351 AKLVECLCQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAE 410
+KL+E + R + LG+ +R+AL AM+Y KGL LSS AKQ +SGEI+N+M VD +
Sbjct: 355 SKLIETVTTRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYMAVDVQ 414
Query: 411 RVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQD 470
R+ D+SWY+HD W++ ++ L++ ILYK++GIA++A L T+I +LV IPL +VQE++QD
Sbjct: 415 RIGDYSWYLHDIWMLPMQIVLALAILYKSVGIAAVATLVATIISILVTIPLAKVQEDYQD 474
Query: 471 KLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFV 530
KLM +KDERM+ TSE LRNMR+LKLQ WE ++ ++ +R+ E GWL+K +Y+ A +F+
Sbjct: 475 KLMTAKDERMRKTSECLRNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKALYSQAFVTFI 534
Query: 531 FWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQ 590
FW +P FV+ TF T I L L +G +LSA+ATFR+LQ P+ N PD++SM+ QTKVSL
Sbjct: 535 FWSSPIFVAAVTFATSIFLGTQLTAGGVLSALATFRILQEPLRNFPDLVSMMAQTKVSLD 594
Query: 591 RIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVA 650
RI+ F ++LQ D P G S A++I DG F WD S PTL I +KV GMRVA
Sbjct: 595 RISGFLQEEELQEDATVVIPRGLSNIAIEIKDGVFCWDPFSSRPTLSGIQMKVEKGMRVA 654
Query: 651 VCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRE 710
VCGTVGSGKSS +SCILGE+PKISG +++CGT YV+QS WIQSG IE+NILFG M +
Sbjct: 655 VCGTVGSGKSSFISCILGEIPKISGEVRICGTTGYVSQSAWIQSGNIEENILFGSPMEKT 714
Query: 711 RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPF 770
+Y V+ ACSLKKD+E+ S GDQT+IGERGINLSGGQKQR+Q+ARALYQD+DIYL DDPF
Sbjct: 715 KYKNVIQACSLKKDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDADIYLLDDPF 774
Query: 771 SAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLIN 830
SA+DAHTGS LF++ +L L+ KTV++VTHQVEFLPAADLILV+K+G+I Q+GKY+DL+
Sbjct: 775 SALDAHTGSDLFRDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQSGKYDDLLQ 834
Query: 831 SGTDFMELVGAHEQALLALGSIEGRPASERASGEN 865
+GTDF LV AH +A+ A+ I P+SE S EN
Sbjct: 835 AGTDFKALVSAHHEAIEAM-DIPS-PSSED-SDEN 866
|
|
| TAIR|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2764 (978.0 bits), Expect = 9.4e-288, P = 9.4e-288
Identities = 590/1454 (40%), Positives = 872/1454 (59%)
Query: 48 GSREMFKNKKALWYKLTLACCFGVSLFNIVFSLLSYFYWYENGWSDYQLVTLLDFGVKTL 107
G R + W+K T+A +S ++V +L+ F + L+ L + + +
Sbjct: 86 GIRGRTPTRTTAWFKTTVAVTVLLSFCSVVLCVLA-FTGKRRTQRPWNLIDPLFWLIHAV 144
Query: 108 GWSAICVCLHTVFLNSRQPKL--PILLKLWW-AFYVFISCYCLI-VDIVLCEKQVSLQIQ 163
I V V R L P+ L+++W + +V S + + + L + SL+ +
Sbjct: 145 THLVIAVL---VLHQKRFAALNHPLSLRIYWISSFVLTSLFAVTGIFHFLSDAATSLRAE 201
Query: 164 YLISDVASAMTGLFLCFVGILSKIEGEDALLLREPLLKADSNETDGTVPSIKSEGADKLT 223
DVAS + F+ +++ + G L+ A++N ++ E +D ++
Sbjct: 202 ----DVASFFSFPLTAFL-LIASVRGITGLVT------AETNSPTKPSDAVSVEKSDNVS 250
Query: 224 PYSRAGVLSVITYSWINSLIALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVG 283
Y+ A V S + W+N L++ G K L LE VP L F++
Sbjct: 251 LYASASVFSKTFWLWMNPLLSKGYKSPLTLEQVPTLSPEHKAERLALLFESSWPKPSENS 310
Query: 284 SGLTTVKLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYV 343
S L++ C WK++L T L ++ YVGP LI +FV + +G+R +GY
Sbjct: 311 SHPIRTTLLR---C-FWKEILFTAILAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQGYY 366
Query: 344 LVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIIN 403
LV VAK VE L F Q+LG+ +R+ LI +Y KGL L+ A+Q G+I+N
Sbjct: 367 LVLILLVAKFVEVLTTHQFNFDSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVN 426
Query: 404 FMTVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGR 463
+M VDA++++D +H WL+ +V +++++LY +LG + + A+ G V V I LG
Sbjct: 427 YMAVDAQQLSDMMLQLHAIWLMPLQVTVALVLLYGSLGASVITAVIGLTGVF-VFILLGT 485
Query: 464 VQEN-FQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVY 522
+ N +Q LM ++D RMKAT+E+L MR++K Q WE F +I+ R E GWL K++Y
Sbjct: 486 QRNNGYQFSLMGNRDSRMKATNEMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKFLY 545
Query: 523 TSAISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMI 582
+ A + V W P +S TF T + L V L++G + + F++LQ PI P + +
Sbjct: 546 SIAGNIIVLWSTPVLISALTFATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISL 605
Query: 583 IQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLK 642
Q +SL R+ S+ +L D VE+ TA+++ DG+FSWD + P L DIN K
Sbjct: 606 SQAMISLGRLDSYMMSKELSEDAVERALGCDGNTAVEVRDGSFSWDDEDNEPALSDINFK 665
Query: 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNIL 702
V G A+ GTVGSGKSSLL+ +LGE+ +ISG +++CG+ YVAQ+ WI++G ++DNIL
Sbjct: 666 VKKGELTAIVGTVGSGKSSLLASVLGEMHRISGQVRVCGSTGYVAQTSWIENGTVQDNIL 725
Query: 703 FGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762
FG M RE+YN VL+ CSL+KDL+++ FGD+T IGERGINLSGGQKQRIQ+ARA+YQ+ D
Sbjct: 726 FGLPMVREKYNKVLNVCSLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLARAVYQECD 785
Query: 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQA 822
+YL DD FSAVDAHTGS +F++ + G L KTV+ VTHQV+FL D ILVM+DGKI ++
Sbjct: 786 VYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIVES 845
Query: 823 GKYNDLINSGTDFMELVGAHEQAL---------LALGSIEGRPASERASGENGGTVIANR 873
GKY++L++SG DF ELV AHE ++ A+ + P S AS T + +
Sbjct: 846 GKYDELVSSGLDFGELVAAHETSMELVEAGADSAAVATSPRTPTSPHASSPR--TSMESP 903
Query: 874 IVKEVENNKGQNDKADEVAVSKGQLVQEEEREKGKVGFSVYWKYITTAFGGALVPFILLA 933
+ ++ + ++ + +L++EEERE G+V VY +Y T A+G + +L
Sbjct: 904 HLSDLNDEHIKSFLGSHIVEDGSKLIKEEERETGQVSLGVYKQYCTEAYGWWGIVLVLFF 963
Query: 934 QTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAG 993
+Q +AS+YW+ + T + S ++ YV +A+ S V RS + G
Sbjct: 964 SLTWQGSLMASDYWLAYETSAKNAIS--FDASVFILGYVIIALVSIVLVSIRSYYVTHLG 1021
Query: 994 YKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRI 1053
KTA + F ++ I APMSFFD TPSGRI++RASTDQ+ D+ IP ++G +
Sbjct: 1022 LKTAQIFFRQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDILIPFMLGLVVSMYTTL 1081
Query: 1054 LGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSG 1113
L V Q AW +P IWY+ YY++S+REL+R+ + KAP+I HF+E+++G
Sbjct: 1082 LSIFIVTCQYAWPTAFFVIPLGWLNIWYRNYYLASSRELTRMDSITKAPIIHHFSESIAG 1141
Query: 1114 STTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISI 1173
TIRSF ++ FR N+K +++ R FH + EWLG RL+++ S + +F++ +
Sbjct: 1142 VMTIRSFRKQELFRQENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCISALFMVLL 1201
Query: 1174 PKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEE 1233
P I P GL+++YGL+LN++L I+ +C +ENK++SVERI Q+T IPSE +E
Sbjct: 1202 PSNVIRPENVGLSLSYGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPSESEWERKE 1261
Query: 1234 SRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTL 1293
+ P +WP HG + L DL+VRY P PLVL+GI+ GGEK G+VGRTGSGKSTLIQ L
Sbjct: 1262 TLPPSNWPFHGNVHLEDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVL 1321
Query: 1294 FRIVEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIW 1353
FR+VEP+ RSR IIPQ+PV+FEGTVRSN+DP E+ +DE+IW
Sbjct: 1322 FRLVEPSGGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIW 1381
Query: 1354 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASV 1413
++L++CQL D V K KLDS V +NGENWS+GQRQL+CLGRV+LKRS++L LDEATASV
Sbjct: 1382 KSLERCQLKDVVATKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFLDEATASV 1441
Query: 1414 DTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSS 1473
D+ TD +IQ+ +R+ F+ CT+++IAHRI +V+D D VL+++ G +EFD+PA LLE + S
Sbjct: 1442 DSQTDAVIQKIIREDFASCTIISIAHRIPTVMDGDRVLVIDAGKAKEFDSPARLLE-RPS 1500
Query: 1474 SFSQLVAEYTLRSS 1487
F+ LV EY LRS+
Sbjct: 1501 LFAALVQEYALRSA 1514
|
|
| TAIR|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1391 (494.7 bits), Expect = 6.4e-287, Sum P(2) = 6.4e-287
Identities = 302/766 (39%), Positives = 452/766 (59%)
Query: 104 VKTLGW--SAIC-VCLHTVFLNSRQ---PKLPILLKLWWAFYVFISCYCLIVDIV--LCE 155
V TL W A+ V + + L+ ++ P P+ L+++W F ++ + I+ L +
Sbjct: 129 VDTLFWLIHAVTNVVIAVLVLHLKRFASPSHPLTLRIYWVFNFVVTTLFTVSGILHLLSD 188
Query: 156 KQVSLQIQYLISDVASAMTGLFLCFVGILSKIEGEDALLLREPLLKADSNETDGTVPSIK 215
+ ++ DVAS ++ L V +L I+G +++ + A + D V K
Sbjct: 189 DPAAASLR--ADDVASFIS-FPLTAVLLLVSIKGSTGVVVTTSNVTAPAKSNDVVVE--K 243
Query: 216 SEGADKLTPYSRAGVLSVITYSWINSLIALGNKKTLDLEDVPQLDSGDSVSGAFANFKNK 275
SE ++ Y+ A +S + W+N L+ G K L+L+ VP L F++K
Sbjct: 244 SEN---VSLYASASFISKTFWLWMNPLLRKGYKSPLNLDQVPTLSPEHRAEKLATLFESK 300
Query: 276 LETEGGVGSGLTTVKLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRR 335
LI+ C WK++ T L ++ YVGP LI +FV + +G+R
Sbjct: 301 WPKPQENSRNPVRTTLIR---C-FWKEIAFTAVLAIIRLSVIYVGPVLIQSFVDFTSGKR 356
Query: 336 DFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQG 395
++GY LV +AK VE L F Q+LG+ +R+ LI +Y KGL L+ A+Q
Sbjct: 357 SSPSQGYYLVLILLIAKFVEVLSTHQFNFNSQKLGMLIRSTLITALYKKGLKLTGSARQN 416
Query: 396 QSSGEIINFMTVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVIVM 455
G+I+N+M VDA++++D +H WL+ +VA +I++LY LG + + + G +
Sbjct: 417 HGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVAAAIVLLYNTLGPSVVTTVIGLTGIF 476
Query: 456 LVNIPLGRVQEN-FQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRET 514
V I LG + N +Q LM ++D RMKAT+E+L MR++K Q WE F +I+ R+ E
Sbjct: 477 -VFILLGTKRNNRYQFSLMMNRDSRMKATNEMLNYMRVIKFQAWEDHFNERILKFREMEF 535
Query: 515 GWLKKYVYTSAISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYN 574
GWL K++Y+ A + V W P +S TF T + L V L++G + + F++LQ PI
Sbjct: 536 GWLSKFLYSIAGNIIVLWSTPVLISALTFTTAVFLGVKLDAGTVFTTTTIFKILQEPIRT 595
Query: 575 LPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNP 634
P + + Q +SL R+ ++ +L + VE+ A++I DG+FSWD P
Sbjct: 596 FPQSMISLSQAMISLGRLDAYMMSRELSEETVERSQGCDGNVAVEIKDGSFSWDDEDDEP 655
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS 694
+++IN +V G A+ GTVGSGKSSLL+ +LGE+ K+SG +++CGT AYVAQ+ WIQ+
Sbjct: 656 AIENINFEVKKGELAAIVGTVGSGKSSLLASVLGEMHKLSGKVRVCGTTAYVAQTSWIQN 715
Query: 695 GKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754
G ++DNILFG MNR +YN VL C L+KD++I+ FGDQT IGERGINLSGGQKQRIQ+A
Sbjct: 716 GTVQDNILFGLPMNRSKYNEVLKVCCLEKDMQIMEFGDQTEIGERGINLSGGQKQRIQLA 775
Query: 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVM 814
RA+YQ+SD+YL DD FSAVDAHTGS +F++ + G L KT++ VTHQV+FL D ILVM
Sbjct: 776 RAVYQESDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTILLVTHQVDFLHNVDRILVM 835
Query: 815 KDGKITQAGKYNDLINSGTDFMELVGAHEQA--LLALGSIEGRPAS 858
+DG I Q+GKY++L++SG DF ELV AHE + L+ GS A+
Sbjct: 836 RDGMIVQSGKYDELVSSGLDFGELVAAHETSMELVEAGSASATAAN 881
|
|
| TAIR|locus:2077750 ABCC10 "ATP-binding cassette C10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1460 (519.0 bits), Expect = 1.6e-286, Sum P(3) = 1.6e-286
Identities = 344/919 (37%), Positives = 517/919 (56%)
Query: 72 SLFN-IVFSL-LSYFYWYENGWSDYQLVTLLDFGVKTLGWSAICVCLHTVFLNSRQPKLP 129
+LFN I+ SL L W L+ L ++ W I + + R+ L
Sbjct: 61 ALFNGIIGSLDLVLGIWVLRENHSKPLILWLVILIQGFTWLFINLIICVRGTRIRKSSLR 120
Query: 130 ILLKLWWAFYVFISCYCLIVDIVLCEKQVSLQIQYLISDVASAMTGLFLCFVGILSKIEG 189
LL ++ FY +S CL V+ + +++++ + + ++ L + G G
Sbjct: 121 -LLSIFSFFYGLVSS-CLSVNNAVFGDELAVRTILDVLLLPGSVLLLLSAYKGYRFDESG 178
Query: 190 EDALLLREPLLKADSNETDGTVPSIKSEGADKLTPYSRAGVLSVITYSWINSLIALGNKK 249
E +L EPL DSN G S K++ ++++ +++AG+ S +++ W+NSLI GN K
Sbjct: 179 ESSLY--EPLNAGDSN---GF--SEKADFDNRVSQFAKAGLFSTLSFWWLNSLIKRGNVK 231
Query: 250 TLDLEDVPQLDSGDSVSGAFANFK-NKLETEGGVGSGLTTVKLIKAMFCSVWKDVLVTGF 308
L+ ED+P+L + ++ F+ N +E + +GS ++K VW+++L +GF
Sbjct: 232 DLEEEDIPELRKEERAETCYSLFEENLIEQKRRLGSSCQP-SILKVTVLCVWRELLTSGF 290
Query: 309 LTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQ 368
+ +A GP L++ F+ G F EG VL +K++E L QR FR +
Sbjct: 291 FAFMKIVAVSAGPLLLNAFILVAEGNASFRYEGLVLAVLLFFSKMIESLSQRQWYFRCRI 350
Query: 369 LGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWLVLFE 428
+G+R+R+ L A I K L L++ ++ S EI+N+ TVDA R+ +F ++ H W F+
Sbjct: 351 VGLRVRSLLTAAINKKQLRLNNSSRLIHSGSEIMNYATVDAYRIGEFPYWFHQLWTTSFQ 410
Query: 429 VALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILR 488
+ +++ IL+ ++G+A+ +AL ++ +L N P+ ++Q FQ +LM S+DER+KA +E L
Sbjct: 411 LLIALGILFHSVGVATFSALAVIILTVLCNAPIAKLQNKFQSELMTSQDERLKACNESLV 470
Query: 489 NMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATFGTCIL 548
NM++LKL WE F I LR E LK A ++ +FW +P FVS ATF TC
Sbjct: 471 NMKVLKLYAWESHFKKVIEKLRNIELKSLKAVQMRKAYNAVLFWSSPVFVSAATFATCYF 530
Query: 549 LNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQP-DLVE 607
L++PL + + + +AT RL+Q P+ +PDVI + IQ KV+ RIA+F +LQ +
Sbjct: 531 LDIPLRASNVFTFVATLRLVQDPVRMIPDVIGVTIQAKVAFSRIATFLEAPELQGGERRR 590
Query: 608 KQPSGSSETALDIVDGNFSWDIS-SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI 666
KQ S ++ A+ I +FSW+ S P L++++L+V G +VAVCG VGSGKS+LL+ I
Sbjct: 591 KQRSEGNQNAIIIKSASFSWEEKGSTKPNLRNVSLEVKFGEKVAVCGEVGSGKSTLLAAI 650
Query: 667 LGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLE 726
LGE P +SGT+ GT AYV+Q+ WIQ+G I DNILFG M+ RY + SL KDLE
Sbjct: 651 LGETPCVSGTIDFYGTIAYVSQTAWIQTGTIRDNILFGGVMDEHRYRETIQKSSLDKDLE 710
Query: 727 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786
+L GDQT IGERG+NLSGGQKQRIQ+ARALYQD+DIYL DDPFSAVDAHT S LFQE +
Sbjct: 711 LLPDGDQTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFQEYV 770
Query: 787 LGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQAL 846
+ L+ K V+ VTHQV+FLPA D +L+M DG+IT+A Y +L+ DF +LV AH +
Sbjct: 771 MDALAGKAVLLVTHQVDFLPAFDSVLLMSDGEITEADTYQELLARSRDFQDLVNAHRETA 830
Query: 847 LALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEEREK 906
SER T + VKE+ K + +L+++EEREK
Sbjct: 831 ----------GSERVVAVENPT----KPVKEINRVISSQSKV----LKPSRLIKQEEREK 872
Query: 907 GKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWAT--PGTKDVKPVVTG 964
G G Y +Y+ G LAQ F + QI N W+ P +K ++
Sbjct: 873 GDTGLRPYIQYMNQNKGYIFFFIASLAQVTFAVGQILQNSWMAANVDNPQVSTLKLILVY 932
Query: 965 STLLIVYVALAVGSSFCVL 983
+ + V + S CV+
Sbjct: 933 LLIGLCSVLCLMVRSVCVV 951
|
|
| DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1105 (394.0 bits), Expect = 7.5e-223, Sum P(2) = 7.5e-223
Identities = 235/618 (38%), Positives = 375/618 (60%)
Query: 895 KGQLVQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWI-VWATP 953
K +++ E +++GKV F +Y Y A G L I+ L Q+L I +N+WI +W
Sbjct: 979 KNKIISVETKQEGKVSFKIYLSYFK-AIGVLLATCIIGFYVLTQLLSILANWWISIWTNS 1037
Query: 954 --------GTKDVKPVVTGSTL---------LIVYVALAVGSSFCVLARSTLLATAGYKT 996
G+ + + + ST+ L +YVA + G+ RS + K
Sbjct: 1038 YGGNGNGSGSGSIS-LSSSSTVEDNEKAKYYLSIYVAFSCGTIAATFLRSFSMVFGSIKG 1096
Query: 997 ATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGT 1056
+ L +M + +PMSFFD TP GRI+NR S DQ D I +G + + +++G+
Sbjct: 1097 SKLFHEKMFKAVILSPMSFFDTTPIGRILNRFSKDQLTIDESIARTLGMFLNTFCQVVGS 1156
Query: 1057 IAVMSQVAWQVFIVFVPAVGSCIWY-QQYYISSARELSRLVGVCKAPVIQHFAETVSGST 1115
I V++ V+ + + VP VG+ ++ Q+YY++S+REL+RL GV ++P+ HF+ET++G T
Sbjct: 1157 IIVIAWVSPFIILAMVP-VGALFYFIQKYYLNSSRELTRLEGVSRSPIYAHFSETLAGVT 1215
Query: 1116 TIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPK 1175
TIR+F +RF N +L+DE + + ++ WL +RL+ L + + +++ + + +
Sbjct: 1216 TIRAFKDVARFVTENERLLDENQKCYYINISSNRWLAIRLEFLGACLVSCAVLYTV-LAR 1274
Query: 1176 GFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESR 1235
I+ AGL +TY L + + ++ +CDLEN ++S+ERI +Y +PSE PL ++S
Sbjct: 1275 SRIEAGTAGLVITYALAITGNMNWMVRMSCDLENSVVSIERIQEYCLLPSEAPLFNDKSV 1334
Query: 1236 PNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR 1295
P SWPSHGKI +L + Y + VL+GI+CT K GIVGRTG+GKS+L Q LFR
Sbjct: 1335 PM-SWPSHGKIVFKNLWLTYREGLDPVLRGINCTIEPKTKVGIVGRTGAGKSSLTQALFR 1393
Query: 1296 IVEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEA 1355
+VEP RSR++IIPQDPV+F G+VR NLDP ++ D +IWEA
Sbjct: 1394 LVEPLRGTIEIDGIDITELGLNPLRSRMAIIPQDPVLFAGSVRYNLDPFDQYDDHEIWEA 1453
Query: 1356 LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT 1415
++ L ++ +G LD+ V + G+N+S+GQRQL+ +GR LLK++ I++LDEA++S+D
Sbjct: 1454 IENAHLLKAIKDLDGGLDAMVQDGGDNFSVGQRQLLVIGRALLKKANIIVLDEASSSIDI 1513
Query: 1416 ATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSF 1475
A+D LIQ+T+R F+DCTVLTIAHR+ ++ DSD +++L+ G + E+D+P+ LL+N+ S +
Sbjct: 1514 ASDALIQETIRTKFADCTVLTIAHRLGTIADSDKIMVLDKGELIEYDSPSELLKNQDSIY 1573
Query: 1476 SQLVAEYTLRSSSSFENL 1493
LV ++S S +N+
Sbjct: 1574 YSLV-----KASESKQNI 1586
|
|
| UNIPROTKB|E1C6S5 ABCC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1036 (369.7 bits), Expect = 2.5e-211, Sum P(3) = 2.5e-211
Identities = 229/595 (38%), Positives = 353/595 (59%)
Query: 895 KGQ-LVQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWI-VWAT 952
KGQ L+++E E GKV FS+Y +Y+ A G + ++ + +N W+ W
Sbjct: 954 KGQRLIEKEAVETGKVKFSMYLRYLR-AVGLGFSFCVAMSYVGEYAAYVGTNLWLSAWTD 1012
Query: 953 PGTK---DVKPVVTGSTLLIVYVALAVGSS-FCVLARSTLLATAGYKTATLLFNEMHYC- 1007
+ + PV + V+ AL V + F LA T+L++ G A+ + +E
Sbjct: 1013 DAERYRNETYPVQQRDLRIGVFGALGVSQALFLFLA--TILSSHGAMRASRIVHEQLLSN 1070
Query: 1008 IFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQV 1067
I R PMSFFD TP+GRI+NR + D D IP ++ + I+ T+ +M +A
Sbjct: 1071 ILRVPMSFFDTTPTGRIVNRFAKDIFTVDETIPMSFRSWLNCFMGIISTL-LMIALATPF 1129
Query: 1068 FIVFVPAVGSCIWYQ-QYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRF 1126
F V + +G ++ ++YIS++R+L RL V ++P+ HF ETVSG + IR++ + RF
Sbjct: 1130 FTVVIVPLGIFYYFVLRFYISTSRQLRRLDSVTRSPIYSHFGETVSGLSVIRAYGHQQRF 1189
Query: 1127 RDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLA 1186
+N + MD + + + WL +RL+ + S+ F+ + + I + ++ I GL+
Sbjct: 1190 LQQNERTMDINQKSVYSWIVSNRWLAIRLEFVGSLVVFFSALLAV-ISRNSLEGGIVGLS 1248
Query: 1187 VTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKI 1246
V+ L + L L+ + +LE I++VER+ +YT + E P + + RP SWPS G+I
Sbjct: 1249 VSSALNVTQTLNWLVRVSSELETNIVAVERVHEYTKVKREAPW-VTDKRPPHSWPSKGEI 1307
Query: 1247 DLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXX 1306
+D +VRY P++ LVLQGI+C+ EK G+VGRTG+GKS+L LFR++E A
Sbjct: 1308 QFVDYKVRYRPELELVLQGITCSIGSTEKVGVVGRTGAGKSSLTNCLFRVLEAAGGKIII 1367
Query: 1307 XXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVR 1366
R L+IIPQDPV+F GT+R NLDP ++ TDE++W+AL+ L V+
Sbjct: 1368 DGLDIATIGLHDLRQNLTIIPQDPVLFTGTLRMNLDPFDQYTDEEVWKALELAHLKAYVQ 1427
Query: 1367 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR 1426
+ +L V+E GEN S+GQRQLVCL R LL+++KIL+LDEATA+VD TD+LIQ T+R
Sbjct: 1428 ELPERLQHVVSEGGENLSVGQRQLVCLARALLRKAKILILDEATAAVDLETDHLIQTTIR 1487
Query: 1427 QHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481
F+DCTVLTIAHR+ +++DS+ V++++ G I EFD+P LL+ K S FS + +
Sbjct: 1488 SAFADCTVLTIAHRLHTIMDSNRVMVMHAGKIVEFDSPEKLLQ-KQSVFSAMAKD 1541
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| ZFIN|ZDB-GENE-040426-1523 abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Score = 1052 (375.4 bits), Expect = 5.3e-209, Sum P(3) = 5.3e-209
Identities = 239/634 (37%), Positives = 357/634 (56%)
Query: 858 SERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQ-LVQEEEREKGKVGFSVYWK 916
S+R S NG V++ + + Q D D+ KGQ L+++E E G+V FSVY +
Sbjct: 937 SQRHSKRNGSVK-----VRKNSSLRAQKDPEDK----KGQRLIEKEMMETGRVKFSVYLQ 987
Query: 917 YITTAFGGALVPFILLAQTLFQILQIASNYWIV-WATPGTK---DVKPVVTGSTLLIVYV 972
Y++ A G V F + + + I N W+ W + P T + V+
Sbjct: 988 YLS-AMGWWYVGFSFVFYFIQNVAVIGQNLWLSDWTDDSIEYFNQTYPNHIRDTRIGVFG 1046
Query: 973 ALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQ 1032
AL + F V + LLA + L + I + PM FFD TPSGRI+NR + D
Sbjct: 1047 ALGLAQGFLVFFGTILLADGSISASRTLHTSLLTNILKVPMMFFDTTPSGRIVNRFAKDI 1106
Query: 1033 SAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFI-VFVPAVGSCIWYQQYYISSARE 1091
D IP ++ ++ +LGT+ V+ +A +F V VP + Q++Y++++R+
Sbjct: 1107 FTVDEMIPMSFRSWILCLLGVLGTLFVIC-LATPIFTAVVVPMAVVYYFVQRFYVATSRQ 1165
Query: 1092 LSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWL 1151
L RL V ++P+ HF ETVSG + IR++ + RF N +D+ + + + WL
Sbjct: 1166 LRRLDSVSRSPIYSHFGETVSGLSVIRAYGHQDRFLKHNEDTIDQNLKSVYPWIVSNRWL 1225
Query: 1152 GLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKI 1211
+RL+ L ++ F +F + I + ++ + GL+++Y L + L L+ +LE I
Sbjct: 1226 AMRLESLGNLVVFFAALFAV-ISRDSLNSGLVGLSISYALNVTQTLNWLVRMTSELETNI 1284
Query: 1212 ISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFP 1271
++VER+ +Y I +E P + RP D WPS G I D +VRY P++ LVL G++C
Sbjct: 1285 VAVERVREYAEIQNEAPW-VTSVRPPDDWPSAGNIRFEDYKVRYRPELELVLHGVTCDIQ 1343
Query: 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQDPV 1331
EK GIVGRTG+GKS+L LFRIVE A RSRL+IIPQDPV
Sbjct: 1344 STEKIGIVGRTGAGKSSLTNCLFRIVEAADGRILIDDIDIATLGLHDLRSRLTIIPQDPV 1403
Query: 1332 MFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1391
+F GT+R NLDP + +D +IW L+ L + VR L+ +V+E GEN S+GQRQL+
Sbjct: 1404 LFSGTLRMNLDPFQTFSDAEIWSVLELAHLKEYVRGLPTGLEHEVSEGGENLSLGQRQLL 1463
Query: 1392 CLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVL 1451
CL R LL++S+IL+LDEATA+VD TD+LIQ T+R+ FS CTVLTIAHR+ +++DS V+
Sbjct: 1464 CLARALLRKSRILILDEATAAVDLETDDLIQSTIRREFSHCTVLTIAHRLNTILDSSRVM 1523
Query: 1452 LLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLR 1485
+L+ G I EFD+P LL +K FS + + +R
Sbjct: 1524 VLDSGKIVEFDSPNELL-SKPGHFSSMAEDAGIR 1556
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6UR05 | MRP1_CANFA | No assigned EC number | 0.3545 | 0.8328 | 0.8138 | yes | no |
| Q5F364 | MRP1_CHICK | No assigned EC number | 0.3574 | 0.8342 | 0.8183 | yes | no |
| P39109 | YCFI_YEAST | No assigned EC number | 0.3398 | 0.8295 | 0.8191 | yes | no |
| Q10185 | ABC2_SCHPO | 3, ., 6, ., 3, ., - | 0.3578 | 0.8328 | 0.8430 | yes | no |
| Q9LK64 | AB3C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.6760 | 0.9879 | 0.9762 | yes | no |
| O35379 | MRP1_MOUSE | No assigned EC number | 0.3506 | 0.8262 | 0.8089 | yes | no |
| Q54JR2 | ABCC3_DICDI | No assigned EC number | 0.3420 | 0.8308 | 0.8803 | yes | no |
| Q63120 | MRP2_RAT | No assigned EC number | 0.3585 | 0.8649 | 0.8397 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3 | 0.976 |
| 3rd Layer | 3.6.3.44 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pm.C_LG_I001151 | multidrug resistance protein ABC transporter family (1488 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1496 | |||
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-162 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-121 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-104 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 9e-95 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-90 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 3e-77 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-76 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-75 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 8e-68 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-63 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-63 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 5e-60 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-58 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-57 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-56 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 5e-56 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-53 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-52 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-52 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 9e-50 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-49 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-48 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 6e-48 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-47 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-44 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-44 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-43 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-43 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 5e-43 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 7e-42 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-41 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-41 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-41 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-40 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-40 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-39 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 4e-39 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-37 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-37 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-36 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-36 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-36 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-35 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-35 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-34 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-33 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-33 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-33 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-33 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-33 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 6e-33 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-32 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-32 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-31 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 4e-31 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-31 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-30 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-29 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-29 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-29 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-29 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 8e-29 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-28 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-28 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-28 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-28 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-28 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-28 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-27 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-27 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-27 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-27 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-27 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 6e-27 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-27 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-27 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-26 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-26 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 8e-26 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 9e-26 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-25 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-25 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-25 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-25 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-25 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-25 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-24 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-24 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-24 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-24 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-24 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-24 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 6e-24 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-24 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-23 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-23 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-23 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-23 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-23 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-23 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 8e-23 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 9e-23 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 9e-23 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-22 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-22 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-22 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-22 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 3e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-22 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-22 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-22 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-22 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 6e-22 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 8e-22 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-22 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 9e-22 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 9e-22 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-21 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-21 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-21 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-21 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-21 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-21 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-21 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-21 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 7e-21 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-20 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-20 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-20 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-20 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-20 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-20 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 4e-20 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-20 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-20 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 4e-20 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-19 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-19 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-19 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-19 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-19 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-19 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-19 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-19 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 5e-19 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-19 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 7e-19 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 9e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-19 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-18 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-18 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-18 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-18 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-18 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-18 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 3e-18 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-18 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-18 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-18 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-18 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 5e-18 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 5e-18 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-18 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 7e-18 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 7e-18 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 7e-18 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-18 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 8e-18 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-17 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-17 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-17 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-17 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-17 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-17 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-17 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-17 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-17 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-17 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 4e-17 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-17 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 6e-17 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 6e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 6e-17 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-17 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 9e-17 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 9e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-16 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-16 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-16 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-16 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-16 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-16 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-16 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-16 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-16 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-16 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-16 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 4e-16 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-16 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-16 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 6e-16 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 6e-16 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 6e-16 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 8e-16 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 8e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-15 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-15 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-15 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-15 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-15 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-15 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-15 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-15 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-15 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-15 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-15 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-15 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-15 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-15 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 6e-15 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 6e-15 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 7e-15 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-14 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-14 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-14 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-14 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-14 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-14 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-14 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-14 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-14 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-14 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-14 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-14 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-14 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-14 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 6e-14 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 6e-14 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 7e-14 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 9e-14 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 9e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-13 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-13 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-13 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-13 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-13 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-13 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-13 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-13 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-13 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-13 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-13 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-13 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-13 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-13 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-13 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-13 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 3e-13 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-13 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 3e-13 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-13 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 5e-13 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-13 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-13 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-13 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 5e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-13 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 6e-13 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 6e-13 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 6e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 7e-13 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-13 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-12 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-12 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-12 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-12 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-12 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-12 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-12 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-12 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-12 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-12 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-12 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-12 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-12 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-12 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-12 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-12 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-12 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-12 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-12 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-12 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 4e-12 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 4e-12 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-12 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-12 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-12 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 6e-12 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 7e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 7e-12 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 7e-12 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-12 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 8e-12 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 8e-12 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 8e-12 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 9e-12 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 9e-12 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 9e-12 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-11 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-11 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-11 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-11 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-11 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-11 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-11 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-11 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-11 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-11 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-11 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-11 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-11 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-11 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-11 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-11 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-11 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-11 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-11 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-11 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 4e-11 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-11 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 5e-11 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 5e-11 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 5e-11 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 5e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 5e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 6e-11 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 6e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 7e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 7e-11 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 9e-11 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-10 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-10 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-10 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-10 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-10 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-10 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-10 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-10 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-10 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-10 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-10 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-10 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-10 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-10 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-10 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-10 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 4e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-10 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-10 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 5e-10 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-10 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 6e-10 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 7e-10 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 8e-10 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 8e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 9e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 9e-10 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-09 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-09 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-09 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-09 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-09 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-09 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 1e-09 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 1e-09 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-09 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-09 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-09 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-09 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-09 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-09 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-09 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-09 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-09 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 3e-09 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-09 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-09 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-09 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 4e-09 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-09 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-09 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-09 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 6e-09 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-09 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 6e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-09 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 7e-09 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 7e-09 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-08 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-08 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-08 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-08 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-08 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-08 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-08 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-08 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-08 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-08 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-08 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-08 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-08 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-08 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-08 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 3e-08 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-08 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-08 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-08 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-08 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 4e-08 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-08 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 5e-08 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 5e-08 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 5e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-08 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-08 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 7e-08 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 7e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 8e-08 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 8e-08 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-07 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-07 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-07 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 1e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-07 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-07 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-07 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-07 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-07 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-07 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-07 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-07 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 2e-07 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-07 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-07 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-07 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-07 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-07 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-07 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-07 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 4e-07 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-07 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 8e-07 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 9e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 9e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 9e-07 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-06 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-06 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-06 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-06 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-06 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-06 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-06 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-06 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-06 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-06 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 6e-06 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 7e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 7e-06 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 8e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-06 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 8e-06 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 8e-06 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 9e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 9e-06 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 9e-06 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-05 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 1e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-05 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-05 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-05 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-05 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-05 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 4e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 4e-05 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-05 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 5e-05 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 5e-05 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 5e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 5e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 6e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 6e-05 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 7e-05 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 8e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 8e-05 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 9e-05 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 9e-05 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 9e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 9e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-04 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-04 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-04 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 2e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-04 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 3e-04 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 5e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 6e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 7e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 7e-04 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 8e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 8e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 8e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 9e-04 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 9e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.001 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.001 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 0.001 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.001 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.002 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.002 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.002 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.002 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 0.002 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 0.002 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 0.002 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.002 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 0.002 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.002 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 0.002 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 0.003 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.003 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.003 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 889 bits (2299), Expect = 0.0
Identities = 524/1517 (34%), Positives = 804/1517 (52%), Gaps = 121/1517 (7%)
Query: 19 CSLHLVLLVGLLVSWVWNKIKTGEGDHNRGSREMFKNKKALWYKLTLAC-CFGVSLFNIV 77
HLVLL GL + +W K DH + R ++K ++ LA C LF +V
Sbjct: 40 NISHLVLL-GLCLYRIWLIKK----DH-KVQRFCLRSKWYNYFLALLAAYCTAEPLFRLV 93
Query: 78 FSLLSYFYWYENGWSDYQLVTLLDFGVKTLGWSAICVCLHTVFLNSRQPKLPILLKLWWA 137
+ + +++V+L+ V+ L W ++ V + + I ++ +
Sbjct: 94 MGISVLNLDGQTSLPPFEIVSLI---VEALTWCSMLVMIGV--------ETKIYIREFRW 142
Query: 138 FYVFISCYCLIVDIVLCEKQVSLQIQYLISDVASAMTGLFLCFV--GILSKIEGEDALLL 195
+ F Y L+ D V+ +S++ +Y S V V GIL LL+
Sbjct: 143 YVRFAVIYVLVGDAVMLNLVLSVK-EYYSSFVLYLYISEVAAQVLFGIL--------LLV 193
Query: 196 REPLLKADSNETDGTVPSIKSE-----------GADKLTPYSRAGVLSVITYSWINSLIA 244
P L + G P I SE G +++ P A + S I + W+ L+
Sbjct: 194 YFPNL----DPYPGYTP-IGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQ 248
Query: 245 LGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVK--LIKAMFCSVWKD 302
LG K+ L +DV +LD+ D + +F+ + E L K L++A+ S+
Sbjct: 249 LGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEE------LKKPKPWLLRALNNSLGGR 302
Query: 303 VLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLC--QR 360
+ GF + L+ +VGP L++ ++ + + GY+ + V ++ LC Q
Sbjct: 303 FWLGGFFKIGNDLSQFVGPLLLNLLLESMQ-NGEPAWIGYIYAFSIFVGVVLGVLCEAQY 361
Query: 361 FR-VFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYI 419
F+ V R+ G R+R+ L+A ++ K L L+ + ++ +SG+I N MT DAE + +
Sbjct: 362 FQNVMRV---GFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQL 418
Query: 420 HDPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKS---- 475
H W F + +++++LY+ LG+ASL G+++++L+ P+ + KL K
Sbjct: 419 HTLWSAPFRIIIAMVLLYQQLGVASL---IGSLMLVLM-FPIQTFIISKMQKLTKEGLQR 474
Query: 476 KDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAP 535
D+R+ +E+L M +K WE F SK+ +R E W +K SA +SF+ P
Sbjct: 475 TDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIP 534
Query: 536 TFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASF 595
V+V +FG LL L + ++++ F +L+ P++ LP++I+ + VSL+R+
Sbjct: 535 VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEEL 594
Query: 596 FCLDD--LQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCG 653
++ L P+ P A+ I +G FSWD + PTL +INL V G VA+ G
Sbjct: 595 LLAEERVLLPNP----PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVG 650
Query: 654 TVGSGKSSLLSCILGEVPKIS-GTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERY 712
+ G GK+SL+S +LGE+P S ++ + GT AYV Q WI + + DNILFG + ERY
Sbjct: 651 STGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERY 710
Query: 713 NAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSA 772
+D +L+ DL++L GD T IGERG+N+SGGQKQR+ +ARA+Y +SD+Y+FDDP SA
Sbjct: 711 ERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSA 770
Query: 773 VDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSG 832
+DAH G +F + + L KT + VT+Q+ FL D I+++ +G I + G Y +L N+G
Sbjct: 771 LDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNG 830
Query: 833 TDFMELVGAHEQALLALGSIEG---RPASERASGENGGTVIANRIVKEVENNKGQNDKAD 889
F +L+ E A G +E E + V AN ++ + K+
Sbjct: 831 PLFQKLM---ENA----GKMEEYVEENGEEEDDQTSSKPV-ANGNANNLKKDSSSKKKSK 882
Query: 890 EVAVSKGQLVQEEEREKGKVGFSVYWKYITTAFGGALVPFIL-LAQTLFQILQIASNYWI 948
E K L+++EERE G V + V +Y A GGA V IL L L ++ +++S+ W+
Sbjct: 883 E---GKSVLIKQEERETGVVSWKVLERY-KNALGGAWVVMILFLCYVLTEVFRVSSSTWL 938
Query: 949 -VWATPGT-KDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHY 1006
W GT K P+ ++Y L+ G L S L + A L + M
Sbjct: 939 SEWTDQGTPKTHGPLF----YNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLG 994
Query: 1007 CIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVA-- 1064
I RAPMSFF P GRIINR + D D + V + I ++L T ++ V+
Sbjct: 995 SILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTI 1054
Query: 1065 --WQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQ 1122
W + + V G+ ++YQ S+ARE+ RL + ++PV F E ++G +TIR++
Sbjct: 1055 SLWAIMPLLVLFYGAYLYYQ----STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKA 1110
Query: 1123 ESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLI------SIPKG 1176
R + N + MD R T ++ WL +RL+ L + T F +
Sbjct: 1111 YDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAA 1170
Query: 1177 FIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRP 1236
F + GL ++Y L + +LL ++ A EN + +VER+ Y +PSE PL IE +RP
Sbjct: 1171 F--ASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRP 1228
Query: 1237 NDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI 1296
WPS G I D+ +RY P++P VL G+S EK GIVGRTG+GKS+++ LFRI
Sbjct: 1229 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRI 1288
Query: 1297 VEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEAL 1356
VE G+ILIDG DIS GL DLR L IIPQ PV+F GTVR NLDP E D +WE+L
Sbjct: 1289 VELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESL 1348
Query: 1357 DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA 1416
++ L D +R+ LD++V+E GEN+S+GQRQL+ L R LL+RSKIL+LDEATA+VD
Sbjct: 1349 ERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVR 1408
Query: 1417 TDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFS 1476
TD LIQ+T+R+ F CT+L IAHR+ ++ID D +L+L+ G + EFD P NLL N+ S+FS
Sbjct: 1409 TDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFS 1468
Query: 1477 QLV-------AEYTLRS 1486
++V A+Y LRS
Sbjct: 1469 KMVQSTGAANAQY-LRS 1484
|
Length = 1622 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 871 bits (2252), Expect = 0.0
Identities = 470/1333 (35%), Positives = 750/1333 (56%), Gaps = 100/1333 (7%)
Query: 224 PYSRAGVLSVITYSWINSLIALGNKKTLDLEDVPQLDSGDS------------------- 264
P S A LS IT+ WI + G ++ L+ D+ L+ D+
Sbjct: 203 PESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKT 262
Query: 265 ----VSGAFA-------NFKNKLETEGGVGSGLTTV-------KLIKAMFCSVWKDVLVT 306
VS + ++L+ V + + L K ++ + L++
Sbjct: 263 RKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMS 322
Query: 307 GFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLC--QRFRVF 364
++ L ++GP ++ ++++N + +GY V ++ L Q F +
Sbjct: 323 FCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHIC 382
Query: 365 RLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWL 424
+ G+R++ A++ +Y K L +++ A++ + GEI+N M+VDA+R D + YI+ W
Sbjct: 383 FVS--GMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWS 440
Query: 425 VLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRV----QENFQDKLMKSKDERM 480
+V L++ L+ NLG + LA V VM++ +PL V + +Q MKSKD R+
Sbjct: 441 APLQVILALYFLWLNLGPSVLAG----VAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRI 496
Query: 481 KATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSV 540
K +EIL +++LKL WE+ FL K+ +R+ E LKK Y A+ +F + P V++
Sbjct: 497 KLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVAL 556
Query: 541 ATFGTCILL--NVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCL 598
TF + + N L++ K ++A F +L+ P+ LP VIS I+Q VSL+R+ F
Sbjct: 557 ITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSH 616
Query: 599 DDLQPDLVEKQPSGSSE-TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGS 657
++L+PD +E++ E ++ + + F+W PTL I + G VAV G VG
Sbjct: 617 EELEPDSIERRTIKPGEGNSITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGC 675
Query: 658 GKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLD 717
GKSSLLS +L E+ K+ G + + G+ AYV Q WIQ+ + +NILFGK +N + Y VL+
Sbjct: 676 GKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLE 735
Query: 718 ACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHT 777
AC+L DLEIL GD+T IGE+G+NLSGGQKQR+ +ARA+Y ++DIYLFDDP SAVDAH
Sbjct: 736 ACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 795
Query: 778 GSHLFQEVL--LGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDF 835
G H+F+ V+ G+L +KT I VTH + +LP D+I+VM GKI++ G Y +L+ F
Sbjct: 796 GKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAF 855
Query: 836 MELV---------GAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKG--- 883
E + G E + AL S EG+ A +G V+ ++ +++ +
Sbjct: 856 AEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSG 915
Query: 884 ----QNDKADEVAVSK-----GQLVQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQ 934
+ + E+ ++ +L++ ++ + G+V SVYW Y+ A+ FI
Sbjct: 916 DQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMK-----AIGLFITFLS 970
Query: 935 TLFQILQ----IASNYWI-VWATPGTKDVKPVVTG-----STLLIVYVALAVGSSFCVLA 984
+ +ASNYW+ +W T D P+V G S L VY AL + F V
Sbjct: 971 IFLFVCNHVSALASNYWLSLW----TDD--PMVNGTQNNTSLRLSVYGALGILQGFAVFG 1024
Query: 985 RSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVG 1044
S ++ G + + +L ++ + R+PMSFF+ TPSG ++NR S + D IP ++
Sbjct: 1025 YSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIK 1084
Query: 1045 AYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWY-QQYYISSARELSRLVGVCKAPV 1103
+ S+ ++G + V+ +A + V +P +G ++ Q++Y++S+R+L RL V ++PV
Sbjct: 1085 MFMGSLFNVIGALIVI-LLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPV 1143
Query: 1104 IQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITF 1163
HF ET+ G + IR+F+++ RF ++ +DE + + A WL +RL+ + +
Sbjct: 1144 YSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIV 1203
Query: 1164 AFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCI 1223
F +F + I + + + GL+V+Y L + L L+ + ++E I++VER+ +Y+
Sbjct: 1204 LFAALFAV-ISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSET 1262
Query: 1224 PSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTG 1283
E P I+E+ P WP G+++ + +RY + LVL+ I+ T GGEK GIVGRTG
Sbjct: 1263 EKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTG 1322
Query: 1284 SGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDP 1343
+GKS+L LFRI E A G+I+IDG++I+ IGLHDLR +++IIPQDPV+F G++R NLDP
Sbjct: 1323 AGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDP 1382
Query: 1344 LEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKI 1403
+ +DE++W AL+ L V KLD + E GEN S+GQRQLVCL R LL+++KI
Sbjct: 1383 FSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442
Query: 1404 LMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDN 1463
L+LDEATA+VD TDNLIQ T+R F DCTVLTIAHR+ +++D V++L+ G + EF
Sbjct: 1443 LVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGA 1502
Query: 1464 PANLLENKSSSFS 1476
P+NLL+ + +S
Sbjct: 1503 PSNLLQQRGIFYS 1515
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 798 bits (2062), Expect = 0.0
Identities = 491/1485 (33%), Positives = 770/1485 (51%), Gaps = 80/1485 (5%)
Query: 19 CSLHLVLLVGLLVSWVWNKIKTGEGDHNRGSREMFKNKKALWYKLTLACCFGVSLFNIVF 78
H VLL GL +W + + R+ + N L + C + +V
Sbjct: 40 IVSHSVLL-GLCFYRIWIILDNAKAQI-YVLRKKYYNC-VLG--ILACYCVVEPVLRLVM 94
Query: 79 SLLSYFYWYENGWSDYQLVTLLDFGVKTLGWSAICVCLHTVFLNSRQPKLPILLKLWWAF 138
+ + E +++ +L+ V+ W L + L ++Q +K + +
Sbjct: 95 GISLFDMDEETDLPPFEVASLM---VEAFAW---FSMLVLIGLETKQ-----YVKEFRWY 143
Query: 139 YVFISCYCLIVDIVLCEKQVSLQIQYLISDVASAMTGLFLCFVGILSKIEGEDALLLREP 198
F Y L+ D VL + + L+ T L+LC + LL+ P
Sbjct: 144 VRFGVVYVLVADAVLLDLVLPLKNSI-------NRTALYLCISSRCCQALFGILLLVYIP 196
Query: 199 LLKADS------NETDGTVPSIKSEGADKLTPYSRAGVLSVITYSWINSLIALGNKKTLD 252
L NE+ V G + + P A + S I +SW+ L+ LG +K +
Sbjct: 197 ELDPYPGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPIT 256
Query: 253 LEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVKLIKAMFCSVWKDVLVTGFLTVL 312
+DV QLD D F+ E S L++A+ S+ + G +
Sbjct: 257 EKDVWQLDQWDQTETLIKRFQRCWTEE----SRRPKPWLLRALNNSLGGRFWLGGIFKIG 312
Query: 313 YTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIR 372
+ L+ +VGP ++ +Q + D GYV LC+ + ++G R
Sbjct: 313 HDLSQFVGPVILSHLLQSMQ-EGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFR 371
Query: 373 MRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWLVLFEVALS 432
+R+ L+A I++K L L+ +A++ +SG++ N +T DA + + +H W F + +S
Sbjct: 372 LRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVS 431
Query: 433 ILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKS----KDERMKATSEILR 488
+++LY+ LG+ASL FG++I+ L+ IPL + KL K D+R+ +EIL
Sbjct: 432 MVLLYQQLGVASL---FGSLILFLL-IPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILA 487
Query: 489 NMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATFGTCIL 548
+M +K WE F S+I +R E W +K SA +SF+ P V++ +FG +L
Sbjct: 488 SMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVL 547
Query: 549 LNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEK 608
L L + ++++ F +L+ P+ LP+++S ++ VSLQRI + + L +
Sbjct: 548 LGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSE--ERILAQN 605
Query: 609 QPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG 668
P A+ I +G FSWD + PTL DINL++ G VA+ G G GK+SL+S +LG
Sbjct: 606 PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLG 665
Query: 669 EVPKISGT-LKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEI 727
E+ + + + G+ AYV Q WI + + +NILFG + ERY +D +L+ DL++
Sbjct: 666 ELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDL 725
Query: 728 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL 787
L D T IGERG+N+SGGQKQR+ +ARA+Y +SDIY+FDDP SA+DAH +F +
Sbjct: 726 LPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMK 785
Query: 788 GLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQALL 847
L KT + VT+Q+ FLP D I+++ +G I + G + +L SG+ F +L+ E A
Sbjct: 786 DELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLM---ENAGK 842
Query: 848 ALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEEREKG 907
+ E E + G TV + E N G + + LV++EERE G
Sbjct: 843 MDATQEVNTNDENIL-KLGPTVTIDV----SERNLGSTKQGKR---GRSVLVKQEERETG 894
Query: 908 KVGFSVYWKYITTAFGGALVPFILLAQTLF-QILQIASNYWI-VWATPGT-KDVKPVVTG 964
+ ++V +Y A GG V ILL L ++L+++S+ W+ +W T K P
Sbjct: 895 IISWNVLMRY-NKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSP---- 949
Query: 965 STLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRI 1024
++VY L G S L ++ A L + M I RAPM FF P+GR+
Sbjct: 950 GFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRV 1009
Query: 1025 INRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVA----WQVFIVFVPAVGSCIW 1080
INR S D D + +L+ + + ++L T A++ V+ W + + + + ++
Sbjct: 1010 INRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLY 1069
Query: 1081 YQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRP 1140
YQ S++RE+ RL V ++P+ F E ++G ++IR++ R N K MD R
Sbjct: 1070 YQ----STSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRF 1125
Query: 1141 TFHIAAAMEWLGLRLDMLSSITFAFTLVFLI------SIPKGFIDPAIAGLAVTYGLTLN 1194
T ++ WL +RL+ L + T F + GF + GL ++Y L +
Sbjct: 1126 TLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGF--ASTMGLLLSYTLNIT 1183
Query: 1195 TLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVR 1254
TLL+ ++ A EN + SVER+ Y +PSE IE +RP WPS G I D+ +R
Sbjct: 1184 TLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLR 1243
Query: 1255 YAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI 1314
Y P +P VL G+S EK G+VGRTG+GKS+++ LFRIVE G+I+ID D++
Sbjct: 1244 YRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKF 1303
Query: 1315 GLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDS 1374
GL DLR LSIIPQ PV+F GTVR N+DP E D +WEAL++ + D + + LD+
Sbjct: 1304 GLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDA 1363
Query: 1375 KVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTV 1434
+V+E GEN+S+GQRQL+ L R LL+RSKIL+LDEATASVD TD+LIQ+T+R+ F CT+
Sbjct: 1364 EVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTM 1423
Query: 1435 LTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLV 1479
L IAHR+ ++ID D +L+L+ G + E+D+P LL +S+F ++V
Sbjct: 1424 LVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMV 1468
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 530 bits (1366), Expect = e-162
Identities = 295/898 (32%), Positives = 462/898 (51%), Gaps = 52/898 (5%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
L+D+++ V G V G GSGKS+LL +L + G + + AYV Q WI +
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNA 735
Query: 696 KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 755
+ NILF E + R + L+ DL L G +T IGE+G+NLSGGQK R+ +AR
Sbjct: 736 TVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLAR 795
Query: 756 ALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMK 815
A+Y + D+YL DDP SA+DAH G + +E LG L+ KT + THQV +P AD ++ +
Sbjct: 796 AVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALG 855
Query: 816 DGKITQAGKYNDLINSGTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIV 875
DG++ +G D + + + L ++ + +E + G +
Sbjct: 856 DGRVEFSGSSADFMRTSL-YATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVA 914
Query: 876 KEVENNKGQNDKADEVAVSKGQLVQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQT 935
K+ N +G + A + A G+L+ EE+ G V +S Y Y+ G F+L
Sbjct: 915 KQEGNAEGGDGAALDAAA--GRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFA 972
Query: 936 LFQILQIASNYWI-VWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGY 994
+ +++ ++S W+ +W+T K ++ +T L VY+ + + +F V R L A
Sbjct: 973 VTELVTVSSGVWLSMWSTRSFK-----LSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMR 1027
Query: 995 KTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIP----SLVGAYAFSI 1050
+ + + ++ + R MSFFD TP GRI+NR S D D +P L+ FSI
Sbjct: 1028 RGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLL-QCLFSI 1086
Query: 1051 IRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQ--QYYISSARELSRLVGVCKAPVIQHFA 1108
+I V S V + VP ++Y+ Q+Y S+ RE+ R+ V K+PV
Sbjct: 1087 ---CSSILVTSASQPFVLVALVPCG--YLYYRLMQFYNSANREIRRIKSVAKSPVFTLLE 1141
Query: 1109 ETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSI-TFAFTL 1167
E + GS TI ++ + ++ +D ++ A WLG+R++ LS+I L
Sbjct: 1142 EALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIAL 1201
Query: 1168 VFLISIPKGF--IDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYT-CIP 1224
+ +I + + L++T + L L+ +E + SVER+ YT +P
Sbjct: 1202 IGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVP 1261
Query: 1225 SE--PPL---------------------AIEESRPNDSWP---SHGKIDLLDLQVRYAPQ 1258
E P L IE + P + P G + +Q+RY
Sbjct: 1262 HEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG 1321
Query: 1259 MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD 1318
+PLVL+G+S EK GIVGRTGSGKSTL+ T R+VE G+I ++G +I GL +
Sbjct: 1322 LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRE 1381
Query: 1319 LRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1378
LR + S+IPQDPV+F+GTVR N+DP E++ ++W AL+ L + V + +DS+V E
Sbjct: 1382 LRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLE 1441
Query: 1379 NGENWSMGQRQLVCLGRVLLKR-SKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTI 1437
G N+S+GQRQL+C+ R LLK+ S +++DEATA++D A D IQ T+ FS TV+TI
Sbjct: 1442 GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITI 1501
Query: 1438 AHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSFENLAG 1495
AHR+ +V D +++++HG + E +P L+ N+ S F +V + F L G
Sbjct: 1502 AHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSEAKRFLQLVG 1559
|
Length = 1560 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 376 bits (968), Expect = e-121
Identities = 134/221 (60%), Positives = 174/221 (78%)
Query: 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1303
G I+ ++ +RY P +P VL+ IS + GEK GIVGRTGSGKS+L+ LFR+VE ++G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1304 ILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGD 1363
ILIDG+DIS IGLHDLRSR+SIIPQDPV+F GT+RSNLDP E +DE++W+AL++ L +
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1364 EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQ 1423
V G LD+ V E GEN S+GQRQL+CL R LL++SKIL+LDEATASVD TD LIQ+
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1424 TLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNP 1464
T+R+ F DCTVLTIAHR+ ++IDSD +L+L+ G + EFD+P
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 329 bits (846), Expect = e-104
Identities = 118/204 (57%), Positives = 154/204 (75%), Gaps = 3/204 (1%)
Query: 618 LDIVDGNFSWDISSH--NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 675
+ + D +F+WD + TLKDINL+V G VA+ G VGSGKSSLLS +LGE+ K+SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 676 TLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
++ + G+ AYV+Q PWIQ+G I +NILFGK + ERY V+ AC+L+ DLEIL GD T
Sbjct: 61 SVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTE 120
Query: 736 IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLG-LLSSKT 794
IGE+GINLSGGQKQRI +ARA+Y D+DIYL DDP SAVDAH G H+F+ +LG LL++KT
Sbjct: 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT 180
Query: 795 VIYVTHQVEFLPAADLILVMKDGK 818
I VTHQ++ LP AD I+V+ +G+
Sbjct: 181 RILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 317 bits (814), Expect = 9e-95
Identities = 161/550 (29%), Positives = 269/550 (48%), Gaps = 13/550 (2%)
Query: 925 ALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLA 984
L +LL L +L I+ A D+ ++ LL++ + LA+
Sbjct: 17 LLAILLLLLSALLSLLLPLLIGRIIDA--LLADLGELLE---LLLLLLLLALLGGVLRAL 71
Query: 985 RSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVG 1044
+S L + G K L ++ + R P+SFFD SG +I+R + D A + +++
Sbjct: 72 QSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLV 131
Query: 1045 AYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVI 1104
SI+ ++G++ ++ ++W++ ++ + + +R+LSR V +
Sbjct: 132 LVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELN 191
Query: 1105 QHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFA 1164
E++SG I++F E R R + +E R + L + +LSS+
Sbjct: 192 ARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTV 251
Query: 1165 FTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCI 1223
L + G + + Y L L T + L L+ + ER+F+ +
Sbjct: 252 LVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFE---L 308
Query: 1224 PSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTG 1283
E P + P+ + G I+ ++ Y + P VL+ IS + GEK IVG +G
Sbjct: 309 LDEEPEVEDP--PDPLKDTIGSIEFENVSFSYPGKKP-VLKDISFSIEPGEKVAIVGPSG 365
Query: 1284 SGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDP 1343
SGKSTLI+ L R+ +P +G+ILIDGIDI I L LR R+ I+ QDP++F GT+R N+
Sbjct: 366 SGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIAL 425
Query: 1344 -LEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402
++TDE+I EAL + + D+ V E G N S GQRQ + + R LL+
Sbjct: 426 GRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP 485
Query: 1403 ILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFD 1462
IL+LDEAT+++DT T+ LIQ L++ T L IAHR++++ ++D +++L++G I E
Sbjct: 486 ILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERG 545
Query: 1463 NPANLLENKS 1472
LL
Sbjct: 546 THEELLAKGG 555
|
Length = 567 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 290 bits (745), Expect = 4e-90
Identities = 122/225 (54%), Positives = 163/225 (72%), Gaps = 18/225 (8%)
Query: 1240 WPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP 1299
WP HG+I++ +L VRYAP +P VL+ +S GEK GIVGRTG+GKSTLI LFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1300 AAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKC 1359
G+I IDGIDIS I L DLRS L+IIPQDP +F GT+RSNLDP +E +DE+I+ AL
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGAL--- 117
Query: 1360 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN 1419
+V+E G N S GQRQL+CL R LLKR ++L+LDEATAS+D ATD
Sbjct: 118 ---------------RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 1420 LIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNP 1464
LIQ+T+R+ F++ T+LTIAHR+ ++ID D +L+++ G ++E+D+P
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 255 bits (654), Expect = 3e-77
Identities = 120/236 (50%), Positives = 171/236 (72%)
Query: 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1303
G+I + DL VRY + VL+ + G+K GI GRTGSGKS+L FR+V+ G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1304 ILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGD 1363
I+IDGIDIS + LH LRSRLSII QDP++F G++R NLDP + TD+++WEAL+ QL +
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1364 EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQ 1423
V+ G LD+ VTE GEN+S+GQRQL CL R +++S IL++DEATAS+D AT+N++Q+
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1424 TLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLV 1479
+ F+D TV+TIAHR+++++D+DLVL+L+ G++ E D P NLL + F+ LV
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 279 bits (714), Expect = 4e-76
Identities = 195/675 (28%), Positives = 317/675 (46%), Gaps = 52/675 (7%)
Query: 223 TPYSRAGVLSVITYSWINSLIALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGG- 281
+P +A LS + + W ++ G ++ L+L D+ Q+ S DS N +LE E
Sbjct: 4 SPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSAD----NLSERLEREWDR 59
Query: 282 -VGSGLTTVKLIKAMF-CSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFEN 339
+ S KL+ A+ C W+ + G L V P L+ + + E
Sbjct: 60 ELASAKKNPKLLNALRRCFFWR-FVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPER 118
Query: 340 E-GYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSS 398
E Y L C+ +V L +F L LG++MR AL ++IY K L LSS+ S+
Sbjct: 119 EIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKIST 178
Query: 399 GEIINFMTVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVN 458
G++++ ++ + + + H W+ +V L + ++++ L + L +++ L
Sbjct: 179 GQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQ 238
Query: 459 IPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLK 518
LG+ ++DK ER+ TSEI+ N++ +K WE I N+R+ E +
Sbjct: 239 ACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTR 298
Query: 519 KYVYTSAISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIAT-----FRLLQVPIY 573
K Y S F+ + FV + ++ L G +L I T L
Sbjct: 299 KIAYLRYFYSSAFFFSGFFVVFLS-----VVPYALIKGIILRRIFTTISYCIVLRMTVTR 353
Query: 574 NLPDVISMIIQTKVSLQRIASFFCLDDLQP------------------------DLVEKQ 609
P I + ++ +I F C ++ + +L EK
Sbjct: 354 QFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKI 413
Query: 610 PSGSSETAL-DIVDGNFSWDISSH-NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667
+ + DG F + S + P LK+I+ K+ G +AV G+ GSGKSSLL I+
Sbjct: 414 KQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIM 473
Query: 668 GEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEI 727
GE+ G +K G ++ Q+ WI G I+DNI+FG + RY +V+ AC L++D+ +
Sbjct: 474 GELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIAL 533
Query: 728 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL 787
D+TV+GE GI LSGGQ+ RI +ARA+Y+D+D+YL D PF+ +D T +F+ L
Sbjct: 534 FPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLC 593
Query: 788 GLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQALL 847
L+S+KT I VT ++E L AD IL++ +G G +++L DF L LL
Sbjct: 594 KLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSL-------LL 646
Query: 848 ALGSIEGRPASERAS 862
L + + A R S
Sbjct: 647 GLEAFDNFSAERRNS 661
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 277 bits (711), Expect = 1e-75
Identities = 175/615 (28%), Positives = 304/615 (49%), Gaps = 42/615 (6%)
Query: 901 EEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTK---- 956
E E ++ Y +YITT V L L ++ W++ P
Sbjct: 843 ERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVD 902
Query: 957 ----------DVKPVV--TGSTLLIVYVALAVGSSFCVLA--RSTLLATAGYKTATLLFN 1002
KPV+ S I Y+ + S L R L + L
Sbjct: 903 QQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHE 962
Query: 1003 EMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQ 1062
+M + + +APM+ + +GRI+NR + D + D +P + + + +LG I V+S
Sbjct: 963 QMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSV 1022
Query: 1063 VAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQ 1122
+ +FI +P I + Y++ ++++L +L ++P+ H ++ G TIR+F +
Sbjct: 1023 LQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGR 1082
Query: 1123 ESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAI 1182
+S F K ++ ++ F + + W +R+D++ F F V I+I
Sbjct: 1083 QSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDII--FVFFFIAVTFIAIGTNQDGEGE 1140
Query: 1183 AGLAVTYGLTLNTLLATLIWF---ACDLENKIISVERIFQYTCIPSEPP----------- 1228
G+ +T L +N +L+TL W + D++ + SV R+F++ +P E P
Sbjct: 1141 VGIILT--LAMN-ILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQL 1197
Query: 1229 ---LAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSG 1285
L IE WPS G++D+ L +Y VLQ +S + GG++ G++GRTGSG
Sbjct: 1198 STVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSG 1257
Query: 1286 KSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE 1345
KSTL+ L R++ G+I IDG+ + + L R +IPQ +F GT R NLDP E
Sbjct: 1258 KSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE 1316
Query: 1346 ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILM 1405
+ +DE+IW+ ++ L + + KLD + + G S G +QL+CL R +L ++KIL+
Sbjct: 1317 QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILL 1376
Query: 1406 LDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPA 1465
LDE +A +D T +I++TL+Q FS+CTV+ HR+ ++++ L++ ++++D+
Sbjct: 1377 LDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQ 1436
Query: 1466 NLLENKSSSFSQLVA 1480
LL N++S F Q ++
Sbjct: 1437 KLL-NETSLFKQAMS 1450
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 243 bits (623), Expect = 8e-68
Identities = 150/536 (27%), Positives = 241/536 (44%), Gaps = 66/536 (12%)
Query: 966 TLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRII 1025
L I + A+ + L R+ L+A G + L + R P+S+F+ G II
Sbjct: 195 VLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEII 254
Query: 1026 NRASTDQSAADL---GIPSLVGAYAFSIIRILGTIAVMSQVAWQ-VFIVFVPAVGSCIW- 1080
+R + + I +L+ ++ L +AVM +W+ IV + +
Sbjct: 255 SRVRELEQIREFLTGSILTLI----IDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLIT 310
Query: 1081 ----------YQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRN 1130
++ SA + S LV ET+ G T+++ E RFR +
Sbjct: 311 LIFQPLLRRKTRKLIEESAEQQSFLV------------ETIKGIETVKALAAEPRFRSQW 358
Query: 1131 MKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYG 1190
+ + F L +L ++ L F + V G
Sbjct: 359 DNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAIL-------------VLEG 405
Query: 1191 -LTLNTLLA-------------TLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRP 1236
LTL L+A L D + +++ER+ I PP +
Sbjct: 406 ELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGD---ILDTPPEQEGDKTL 462
Query: 1237 NDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI 1296
G+I+ ++ RY P P VL+ +S P GEK IVGR+GSGKSTL++ L +
Sbjct: 463 IHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL 522
Query: 1297 VEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIW 1353
+P G+IL+DG+D++ I L LR ++ + QDP +F G++R N+ +P E+TDE+I
Sbjct: 523 YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP--EATDEEII 580
Query: 1354 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASV 1413
EA + + D+ V E G N S GQRQ + L R LL + KIL+LDEAT+++
Sbjct: 581 EAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSAL 640
Query: 1414 DTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLE 1469
D T+ +I Q L Q TV+ IAHR++++ +D +++L+ G I E + LL
Sbjct: 641 DPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 215 bits (551), Expect = 1e-63
Identities = 90/229 (39%), Positives = 136/229 (59%), Gaps = 2/229 (0%)
Query: 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1303
G+I+ ++ Y + P VL+ I+ + GE IVG TG+GK+TLI L R +P GQ
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1304 ILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD-PLEESTDEQIWEALDKCQLG 1362
ILIDGIDI I LRS + ++ QD +F GT+ N+ +TDE++ EA +
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 1363 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ 1422
D + K D+ + ENG N S G+RQL+ + R +L+ KIL+LDEAT+++DT T+ LIQ
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 1423 QTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENK 1471
+ L + T + IAHR++++ ++D +L+L+ G I E LL K
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 213 bits (543), Expect = 5e-63
Identities = 101/217 (46%), Positives = 137/217 (63%), Gaps = 21/217 (9%)
Query: 620 IVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL 679
+ +G FSW S TL +IN+++ G + G VG GKSSLL ILGE+ + G +
Sbjct: 3 VTNGYFSW--GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHW 60
Query: 680 C-----------------GTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLK 722
+ AY AQ PW+ + +E+NI FG N++RY AV DACSL+
Sbjct: 61 SNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQ 120
Query: 723 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLF 782
D+++L FGDQT IGERGINLSGGQ+QRI +ARALYQ+++I DDPFSA+D H HL
Sbjct: 121 PDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLM 180
Query: 783 QEVLLGLL--SSKTVIYVTHQVEFLPAADLILVMKDG 817
QE +L L +T++ VTH++++LP AD I+ MKDG
Sbjct: 181 QEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 216 bits (553), Expect = 5e-60
Identities = 141/569 (24%), Positives = 245/569 (43%), Gaps = 43/569 (7%)
Query: 303 VLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFR 362
+L+ L +L L S + P LI + L E +L+ + V + +
Sbjct: 16 LLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGV---LRALQ 72
Query: 363 VFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDP 422
+ +LG ++ A L ++ K L L SG++I+ +T D E V++
Sbjct: 73 SYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNL--VSTVL 130
Query: 423 WLVLFEVALSILILYKNLGI---ASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDER 479
LV + L I L + +L L ++ LV L R ++ ++ E
Sbjct: 131 VLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGEL 190
Query: 480 MKATSEILRNMRILKLQGWE----MKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAP 535
E L +R++K G E +F LR+ + + + +
Sbjct: 191 NARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLG- 249
Query: 536 TFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASF 595
V V G ++L+ L G + + I L PI L +V+S++ + + +R+
Sbjct: 250 -TVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFEL 308
Query: 596 FCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISS-----HNPTLKDINLKVFHGMRVA 650
D +P++ + L G+ ++ S P LKDI+ + G +VA
Sbjct: 309 L---DEEPEVED------PPDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVA 359
Query: 651 VCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGKI 697
+ G GSGKS+L+ +L SG + + G V+Q P + SG I
Sbjct: 360 IVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTI 419
Query: 698 EDNILFGK-EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 756
+NI G+ + E L + + + L G T++GERG+NLSGGQ+QR+ IARA
Sbjct: 420 RENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARA 479
Query: 757 LYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKD 816
L ++ I + D+ SA+D T + L Q+ L LL +T + + H++ + AD I+V+ +
Sbjct: 480 LLRNPPILILDEATSALDTETEA-LIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDN 538
Query: 817 GKITQAGKYNDLINSGTDFMELVGAHEQA 845
G+I + G + +L+ G + L A A
Sbjct: 539 GRIVERGTHEELLAKGGLYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 2e-58
Identities = 138/579 (23%), Positives = 232/579 (40%), Gaps = 74/579 (12%)
Query: 939 ILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTAT 998
I IA + + + + LLI+ + V +F R L A K
Sbjct: 14 IAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRA 73
Query: 999 LLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYA-------FSII 1051
L + + + +F P+G A GI L YA S I
Sbjct: 74 SLRQLVLDKLAKLGPAFIAQKPAGSAATLALE-------GIEQLEPYYARYLPQMFLSAI 126
Query: 1052 RILGTIAVMSQVAWQ---VFIVFVPAVGSCIWYQQYYI--SSARELSRLVGVCKAPVIQH 1106
L + + W + ++ P + + +S ++ S L + H
Sbjct: 127 VPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLS-----GH 181
Query: 1107 FAETVSGSTTIRSFDQE-----------SRFRDRNMKLMDEYSRPTFHIAAAMEWL---- 1151
F + + G T+R+F + FR M ++ R F +A +E+
Sbjct: 182 FLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVL----RIAFLSSAVLEFFAYLS 237
Query: 1152 --------GLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWF 1203
G RL +T L LI P+ F + L + A
Sbjct: 238 IALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQ--PLRDLGSFFHAAAAGEAAA---- 291
Query: 1204 ACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVL 1263
+++F P P + + +I L +L RY P L
Sbjct: 292 -----------DKLFTLLESPVATPG--SGEKAEVANEPPIEISLENLSFRY-PDGKPAL 337
Query: 1264 QGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323
++ T G+ T +VG +G+GKSTL+ L + P G+I ++GID+ + R ++
Sbjct: 338 SDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397
Query: 1324 SIIPQDPVMFEGTVRSNLDPLEE-STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGEN 1382
S + Q+P +F GT+R N+ ++DE+I ALD+ L + V K +G LD+ + E G
Sbjct: 398 SWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDG-LDTVIGEGGAG 456
Query: 1383 WSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRIT 1442
S GQ Q + L R LL + +L+LDE TA +D T+ +I Q L++ TVL I HR+
Sbjct: 457 LSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLE 516
Query: 1443 SVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481
D+D +++L++G + E L E + ++ L+ +
Sbjct: 517 DAADADRIVVLDNGRLVEQGTHEELSEKQ-GLYANLLKQ 554
|
Length = 559 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 194 bits (496), Expect = 6e-57
Identities = 72/211 (34%), Positives = 113/211 (53%), Gaps = 41/211 (19%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
I+ ++ Y + VL+ +S T GEK IVG +GSGKSTL++ L R+ +P +G+IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEV 1365
IDG+D+ + L LR ++ +PQDP +F GT+R N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 1366 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTL 1425
S GQRQ + + R LL+ IL+LDEAT+++D T+ LI + L
Sbjct: 97 -----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139
Query: 1426 RQHFSDCTVLTIAHRITSVIDSDLVLLLNHG 1456
R TV+ IAHR++++ D+D +++L+ G
Sbjct: 140 RALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 195 bits (499), Expect = 1e-56
Identities = 85/221 (38%), Positives = 131/221 (59%), Gaps = 6/221 (2%)
Query: 1255 YAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI 1314
Y P P VL+ +S T P G+K IVG +GSGKST+++ LFR + ++G ILIDG DI +
Sbjct: 10 YDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREV 68
Query: 1315 GLHDLRSRLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIWEALDKCQLGDEVRKKEGK 1371
L LR + ++PQD V+F T+ N+ P ++TDE++ EA Q+ D++ +
Sbjct: 69 TLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP--DATDEEVIEAAKAAQIHDKIMRFPDG 126
Query: 1372 LDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSD 1431
D+ V E G S G++Q V + R +LK IL+LDEAT+++DT T+ IQ LR
Sbjct: 127 YDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKG 186
Query: 1432 CTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKS 1472
T + IAHR+++++++D +++L G I E LL
Sbjct: 187 RTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGG 227
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 5e-56
Identities = 160/536 (29%), Positives = 255/536 (47%), Gaps = 49/536 (9%)
Query: 961 VVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCI------------ 1008
V G+ L + LA ++ L LLA + +LLFN +
Sbjct: 54 VAKGNLPLGLVAGLAA--AYVGL---QLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAA 108
Query: 1009 FRAPMSFFDATPSGRIINRASTDQSAA-DLGIPSLVGAYAFSIIRILGTIAVMSQVAWQ- 1066
R P+S FD P G++I+R + D DL + ++V S I + M + W+
Sbjct: 109 LRQPLSAFDTQPVGQLISRVTNDTEVIRDLYV-TVVATVLRSAALIGAMLVAMFSLDWRM 167
Query: 1067 --VFIVFVPAVGSCIW-YQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQE 1123
V I+ PAV + YQ+Y R + + A + F E ++G + I+ F Q+
Sbjct: 168 ALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYL----ADINDGFNEVINGMSVIQQFRQQ 223
Query: 1124 SRFRDRNMKLMDEYSRPTFHIAAAMEWL---GLRLDMLSSITFAFTLVFLISIPKGFIDP 1180
+RF +R M E SR H A M+ L G L L S+ A L L+ + GF
Sbjct: 224 ARFGER----MGEASRS--HYMARMQTLRLDGFLLRPLLSLFSALILCGLL-MLFGFSAS 276
Query: 1181 AIAGLAVTYGLT-----LNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESR 1235
+ V Y LN L L L+ +++ ER+F+ P + + R
Sbjct: 277 GTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ--YGNDDR 334
Query: 1236 PNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR 1295
P S G+ID+ ++ Y VLQ I+ + P +VG TGSGKSTL L
Sbjct: 335 PLQS----GRIDIDNVSFAYRDDNL-VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG 389
Query: 1296 IVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEA 1355
G+I +DG +S + LR ++++ QDPV+ T +N+ + ++EQ+W+A
Sbjct: 390 YYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQA 449
Query: 1356 LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT 1415
L+ QL + R L + + E G N S+GQ+QL+ L RVL++ +IL+LDEATA++D+
Sbjct: 450 LETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDS 509
Query: 1416 ATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENK 1471
T+ IQQ L T++ IAHR+++++++D +L+L+ G E LL +
Sbjct: 510 GTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565
|
Length = 592 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 1e-53
Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 1/225 (0%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
++ ++ RY P VL+ IS P GE +VG +GSGKSTL+ + R + +G+IL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD-PLEESTDEQIWEALDKCQLGDE 1364
IDG D+ L LR ++ ++ QD +F TV N+ +T E++ EA +
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 1365 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424
+ + D+ + E G S GQRQ + + R LLK IL+LDEAT+++DT ++ L+Q
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 1425 LRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLE 1469
L + + T IAHR++++ ++D +++L G I E LL
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 2e-52
Identities = 98/260 (37%), Positives = 157/260 (60%), Gaps = 7/260 (2%)
Query: 585 TKVSLQRIASFFCLDDLQPDLVE--KQPSGSSETALDIVDGNFSWDISSH-NPTLKDINL 641
T V ++ + +F+ D+ +L+E KQ + + + D + FS ++ P LK+INL
Sbjct: 2 TGVIMENVTAFW--DEGFGELLEKAKQENNDRKHSSDDNNLFFS-NLCLVGAPVLKNINL 58
Query: 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNI 701
K+ G +A+ G+ GSGK+SLL ILGE+ G +K G ++ +Q WI G I++NI
Sbjct: 59 KIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENI 118
Query: 702 LFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761
+FG + RY +V+ AC L++D+ D TV+GE GI LSGGQ+ RI +ARA+Y+D+
Sbjct: 119 IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDA 178
Query: 762 DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQ 821
D+YL D PF +D T +F+ + L+++KT I VT ++E L AD IL++ +G
Sbjct: 179 DLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 238
Query: 822 AGKYNDLINSGTDF-MELVG 840
G +++L + DF +L+G
Sbjct: 239 YGTFSELQSLRPDFSSKLMG 258
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 4e-52
Identities = 133/517 (25%), Positives = 236/517 (45%), Gaps = 28/517 (5%)
Query: 966 TLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRII 1025
+ +V + LAV C + LL+ K + M + P+SFFD P+G ++
Sbjct: 55 WVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLL 114
Query: 1026 NRASTD--QSAADLGIPSLVGAYAFSIIR----ILGTIAVMSQVAWQVFIVFVPAVGSCI 1079
+R + D Q A+ + A+ ++R ++G V+ +WQ+ ++ V +
Sbjct: 115 SRITFDSEQVAS-----AATDAFI-VLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLS 168
Query: 1080 WYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSR 1139
+ R +S+ + V ET+ G ++ F ++ R + + R
Sbjct: 169 ILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRR 228
Query: 1140 PTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLA--VTYGLTLNTLL 1197
+ +A +++S+ A ++F+ +T + L L
Sbjct: 229 LAMKMTSAGSISSPITQLIASLALAV-VLFIALFQAQAGSLTAGDFTAFITAMIALIRPL 287
Query: 1198 ATLIWFACDLENKIISVERIFQYTCIPSEP---PLAIEESRPNDSWPSHGKIDLLDLQVR 1254
+L ++ + + E +F P E AIE +R G ++ ++ R
Sbjct: 288 KSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERAR--------GDVEFRNVTFR 339
Query: 1255 YAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI 1314
Y + L IS GE +VGR+GSGKSTL+ + R EP +GQIL+DG D++
Sbjct: 340 YPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADY 399
Query: 1315 GLHDLRSRLSIIPQDPVMFEGTVRSNL--DPLEESTDEQIWEALDKCQLGDEVRKKEGKL 1372
L LR +++++ QD V+F T+ +N+ E++ +I AL D V K L
Sbjct: 400 TLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGL 459
Query: 1373 DSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDC 1432
D+ + ENG S GQRQ + + R LLK + IL+LDEAT+++D ++ L+Q L +
Sbjct: 460 DTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGR 519
Query: 1433 TVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLE 1469
T L IAHR++++ +D +++++ G I E LL
Sbjct: 520 TTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 9e-50
Identities = 81/229 (35%), Positives = 140/229 (61%), Gaps = 4/229 (1%)
Query: 1246 IDLLDLQVRYA--PQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1303
I+ ++ RY P +P +L+G+S T P G+ +VG +G GKST++ L R +P +G+
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1304 ILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD-PLEESTDEQIWEALDKCQLG 1362
IL+DG+DI + L LRS++ ++ Q+PV+F+GT+ N+ ++TDE++ EA K +
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIH 119
Query: 1363 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ 1422
D + D+ V E G S GQ+Q + + R LL+ KIL+LDEAT+++D ++ L+Q
Sbjct: 120 DFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQ 179
Query: 1423 QTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENK 1471
+ L + T + IAHR++++ ++DL+ +L +G + E L+ K
Sbjct: 180 EALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 4e-49
Identities = 97/375 (25%), Positives = 158/375 (42%), Gaps = 16/375 (4%)
Query: 1105 QHFAETVSGSTTIRSFDQESRFRDRNMKL---MDEYSRPTFHIAAAMEWLGLRLDMLSSI 1161
F + V G + F E +R + R + + L + L I
Sbjct: 199 SQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVI 258
Query: 1162 TFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFAC-DLENKIISVERIFQY 1220
L + G + A LA+ L A L I S R+
Sbjct: 259 --GLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRL--- 313
Query: 1221 TCIPSEPPLAIEESRPNDSWPSHGKIDLL--DLQVRYAPQMPLVLQGISCTFPGGEKTGI 1278
I + P E D + L ++ Y Q L+ + T GEK I
Sbjct: 314 NDILDQKP----EVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAI 369
Query: 1279 VGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVR 1338
+GR+GSGKSTL+Q L +P G I ++G++I+ + LR +S++ Q +F GT+R
Sbjct: 370 LGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLR 429
Query: 1339 SNLD-PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397
NL +++DE++W AL + L + L++ + E G S G+R+ + L R L
Sbjct: 430 DNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARAL 489
Query: 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGL 1457
L + + +LDE T +D T+ + L +H T+L + HR+ + D +++L++G
Sbjct: 490 LHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGK 549
Query: 1458 IEEFDNPANLLENKS 1472
I E A LL N
Sbjct: 550 IIEEGTHAELLANNG 564
|
Length = 573 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 2e-48
Identities = 141/560 (25%), Positives = 241/560 (43%), Gaps = 48/560 (8%)
Query: 302 DVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRF 361
+VL+ L L LA+ P + + VL +A L E L +
Sbjct: 158 EVLLASLLLQLLALAT---PLFSQIVIDKVLPDASRSTL-TVLAIGLLLAALFEALLRLL 213
Query: 362 RVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADF-SWYIH 420
R + + LG R+ L + L L + +S GEII+ + + E++ +F + I
Sbjct: 214 RTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSIL 272
Query: 421 DPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERM 480
+ L + + +++ +L L + +L+ + + KL++ E+
Sbjct: 273 TLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQ 332
Query: 481 KATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSV 540
E ++ + +K E +F S+ N ++ K + I + + SV
Sbjct: 333 SFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSV 392
Query: 541 AT--FGTCILLNVPLESGKM-LSAIATFRLLQV----PIYNLPDVISMIIQTKVSLQRIA 593
FG ++L G++ L + F +L PI L + + Q KV+L+R+
Sbjct: 393 LILWFGAILVLE-----GELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLG 447
Query: 594 SFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWD-ISSH-----NPTLKDINLKVFHGM 647
D +Q + L + G ++ +S P L+D++L++ G
Sbjct: 448 DIL-------DTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGE 500
Query: 648 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQS 694
+VA+ G GSGKS+LL +LG G + L G YV Q P++ S
Sbjct: 501 KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFS 560
Query: 695 GKIEDNILFGKEM--NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752
G I +NI G + E A A + +E L G T +GE G NLSGGQ+QR+
Sbjct: 561 GSIRENIALGNPEATDEEIIEAAQLAG-AHEFIENLPMGYDTPVGEGGANLSGGQRQRLA 619
Query: 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLIL 812
+ARAL I L D+ SA+D T + + LL +L +TVI + H++ + +AD I+
Sbjct: 620 LARALLSKPKILLLDEATSALDPET-EAIILQNLLQILQGRTVIIIAHRLSTIRSADRII 678
Query: 813 VMKDGKITQAGKYNDLINSG 832
V+ GKI + G + +L+ G
Sbjct: 679 VLDQGKIVEQGSHEELLAQG 698
|
Length = 709 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 6e-48
Identities = 85/237 (35%), Positives = 141/237 (59%), Gaps = 2/237 (0%)
Query: 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1303
G++ + DL +Y VL+ IS + G++ G++GRTGSGKSTL+ R++ G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 1304 ILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGD 1363
I IDG+ + + L R +IPQ +F GT R NLDP + +DE+IW+ ++ L
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1364 EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQ 1423
+ + G+LD + + G S G +QL+CL R +L ++KIL+LDE +A +D T +I++
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1424 TLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVA 1480
TL+Q F+DCTV+ HRI ++++ L++ + ++D+ LL N+ S F Q ++
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-NEKSHFKQAIS 235
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 167 bits (426), Expect = 5e-47
Identities = 81/219 (36%), Positives = 124/219 (56%), Gaps = 7/219 (3%)
Query: 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1303
G+I+ ++ Y Q L +S T GEK I+GR GSGKSTL++ L + +P +G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1304 ILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIWEALDKCQ 1360
+L+DG DI + DLR + +PQD +F GT+R N+ P + DE+I A +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAP--LADDERILRAAELAG 118
Query: 1361 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNL 1420
+ D V K LD ++ E G S GQRQ V L R LL IL+LDE T+++D ++
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 1421 IQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLI 1458
+++ LRQ D T++ I HR S++D D +++++ G I
Sbjct: 179 LKERLRQLLGDKTLIIITHR-PSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 1e-44
Identities = 120/465 (25%), Positives = 210/465 (45%), Gaps = 56/465 (12%)
Query: 1038 GIPSLVGAYAFSIIRILGTIAVMSQVAWQVF-IVFVPAVGSCIWYQQYY--------ISS 1088
GI +++ F+I+ L I++++ + W+V+ F + +
Sbjct: 51 GIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDF 110
Query: 1089 ARELSRLVGVCKA---PVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIA 1145
R ++ A + +F T++ F E R ++ Y + +
Sbjct: 111 RRLMNNADSDANAKAIDSLLNFE-------TVKYFGNEEYEAVRYDHALETYEKAAIKVH 163
Query: 1146 AAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYG-LTL------NTLLA 1198
++ L F T +F + ++ L V G LT+ N LL
Sbjct: 164 VSLLVL----------NFGQTAIFSTGLRVMMT---MSALGVEEGQLTVGDLVNVNALLF 210
Query: 1199 TLIWFAC-------DLENKIISVERIFQYTCIPSEPPLAIEESRPN--DSWP-SHGKIDL 1248
L ++ + +E++F + +E P+ WP G +
Sbjct: 211 QLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAE-----VSDAPDAPPLWPVRLGAVAF 265
Query: 1249 LDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308
+++ Y P+ P +L GIS T P G+ IVG +G+GKST+++ LFR + +G I IDG
Sbjct: 266 INVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDG 324
Query: 1309 IDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD-PLEESTDEQIWEALDKCQLGDEVRK 1367
DI + LR + I+PQD V+F T+ N+ ++T E++ A + Q+ D ++
Sbjct: 325 QDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQS 384
Query: 1368 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ 1427
D+ V E G S G++Q V + R +LK IL+LDEAT+++DT T+ IQ LR+
Sbjct: 385 LPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE 444
Query: 1428 HFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKS 1472
+ T L IAHR++++ID+D +++L++G I E LL
Sbjct: 445 VSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGG 489
|
Length = 497 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 3e-44
Identities = 99/389 (25%), Positives = 168/389 (43%), Gaps = 61/389 (15%)
Query: 1090 RELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAME 1149
LSRL G HF + + G T++ F + + +EY T +
Sbjct: 177 AALSRLSG--------HFLDRLRGLPTLKLFGRAKAQAAAIRRSSEEYRERTMRV----- 223
Query: 1150 WLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYG-------LTLNTLLATLI- 1201
LR+ LSS L ++ ++A +AV G L L T L L+
Sbjct: 224 ---LRIAFLSS----AVLELFATL-------SVALVAVYIGFRLLAGDLDLATGLFVLLL 269
Query: 1202 --------------WFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKID 1247
+ A + + + E +F P + ++
Sbjct: 270 APEFYLPLRQLGAQYHARA--DGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPS----LE 323
Query: 1248 LLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID 1307
+ V Y + P L+ +S T P GE+ +VG +G+GKSTL+ L V+P G I ++
Sbjct: 324 FSGVSVAYPGRRP-ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVN 382
Query: 1308 GIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIWEALDKCQLGDE 1364
G+ ++ R +++ +PQ P +F GT+ N+ P +++D +I EAL++ L +
Sbjct: 383 GVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP--DASDAEIREALERAGLDEF 440
Query: 1365 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424
V LD+ + E G S GQ Q + L R L+ + +L+LDE TA +D T+ + +
Sbjct: 441 VAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEA 500
Query: 1425 LRQHFSDCTVLTIAHRITSVIDSDLVLLL 1453
LR TVL + HR+ +D +++L
Sbjct: 501 LRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 1e-43
Identities = 128/523 (24%), Positives = 230/523 (43%), Gaps = 56/523 (10%)
Query: 967 LLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIIN 1026
LL+ A+ + L K A + + I R P+ FF +G I +
Sbjct: 196 LLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIAS 255
Query: 1027 RASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYI 1086
R + A+ L A + ++ +M + ++ + + Q
Sbjct: 256 RVQLNDQVAEFLSGQLATT-ALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVS 314
Query: 1087 SSARELSRLVGVCKAPVIQHFAETVSGSTTIRSF-------DQESRFRDRNMKLMDEYSR 1139
+ +R + + +SG +I + D SR+ KL++
Sbjct: 315 RRRVDANRRLQQDAGKLT---GVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQE 371
Query: 1140 PTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYG-LTLNTLLA 1198
+ + LG+ +L+S+ A LV + GL V G LT+ L+A
Sbjct: 372 ----LGVLTQILGVLPTLLTSLNSALILV-------------VGGLRVMEGQLTIGMLVA 414
Query: 1199 -------------TLIWFAC---DLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPS 1242
L+ F +LE + ++ + + P +P L EE+ S PS
Sbjct: 415 FQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRN---PVDPLLEEEEAPAAGSEPS 471
Query: 1243 ---HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP 1299
G ++L ++ Y+P P +++ S T G++ +VG +GSGKST+ + + + +P
Sbjct: 472 PRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP 531
Query: 1300 AAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEEST--DEQIWEALD 1357
+G+IL DGI I L + ++++ QD +FEGTVR NL L + T D + A
Sbjct: 532 WSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLT-LWDPTIPDADLVRACK 590
Query: 1358 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT 1417
+ D + + G D+++ E G N S GQRQ + + R L++ IL+LDEAT+++D T
Sbjct: 591 DAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET 650
Query: 1418 DNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEE 1460
+ +I LR+ CT + +AHR++++ D D +++L G + +
Sbjct: 651 EKIIDDNLRRR--GCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 2e-43
Identities = 79/220 (35%), Positives = 128/220 (58%), Gaps = 7/220 (3%)
Query: 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1302
G+I+ ++ Y Q L +S T GEK I+GR GSGKSTL++ L + +P G
Sbjct: 461 QGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG 520
Query: 1303 QILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIWEALDKC 1359
+L+DG+DI I DLR + +PQDP +F GT+R N+ P + DE+I A +
Sbjct: 521 SVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPY--ADDEEILRAAELA 578
Query: 1360 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN 1419
+ + VR+ LD ++ E G + S GQRQ V L R LL+ IL+LDE T+++D ++
Sbjct: 579 GVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEE 638
Query: 1420 LIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLI 1458
+ L++ + T++ + HR TS++D D ++++++G I
Sbjct: 639 RFKDRLKRWLAGKTLVLVTHR-TSLLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 5e-43
Identities = 138/530 (26%), Positives = 245/530 (46%), Gaps = 59/530 (11%)
Query: 967 LLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIIN 1026
LL+V + LA+G++ AR L+ G + + + + SFFD SG +++
Sbjct: 64 LLVVALVLALGTA----ARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVS 119
Query: 1027 RASTDQSAADLGIPSLVGAYAFSI-----IRILGTIAVM--------SQVAWQVFIVFVP 1073
R +TD + + S++G+ + S+ + +G + +M S V V +V +P
Sbjct: 120 RLTTDTTL----LQSVIGS-SLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLP 174
Query: 1074 AVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQE----SRFRDR 1129
+ + R+LSR A + ET+ T+++F E SRF
Sbjct: 175 ILL--------FGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRF-GG 225
Query: 1130 NMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLI------SIPKGFIDPAIA 1183
++ E +R A + I F + + + G +
Sbjct: 226 AVEKAYEAARQRIRTRALL--------TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTL 277
Query: 1184 GLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSH 1243
G V Y + + + TL +L+ + ER+ + + +EP + P
Sbjct: 278 GQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIEL--LQAEPDIKAPAHPKTLPVPLR 335
Query: 1244 GKIDLLDLQVRYAPQMP--LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA 1301
G+I+ + Y P P L G++ T GE +VG +G+GKSTL Q L R +P +
Sbjct: 336 GEIEFEQVNFAY-PARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQS 394
Query: 1302 GQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIWEALDK 1358
G+IL+DG+D+ + +LR+R++++PQDPV+F +V N+ P ++TDE++ A
Sbjct: 395 GRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP--DATDEEVEAAARA 452
Query: 1359 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD 1418
+ + D+ + E G S GQRQ + + R +LK + IL+LDEAT+++D ++
Sbjct: 453 AHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESE 512
Query: 1419 NLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLL 1468
L+QQ L T L IAHR+ +V+ +D +++++ G I A L+
Sbjct: 513 QLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELI 562
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 7e-42
Identities = 128/476 (26%), Positives = 228/476 (47%), Gaps = 26/476 (5%)
Query: 1015 FFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIV---F 1071
FFD +G + +R S+D + V +++ +LG + M ++ ++ +V
Sbjct: 251 FFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLIN 310
Query: 1072 VPAVG-SCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQE----SRF 1126
+P V + + + Y + EL V A Q E +SG T+RSF E SRF
Sbjct: 311 LPLVFLAEKVFGKRYQLLSEELQEAV----AKANQVAEEALSGMRTVRSFAAEEGEASRF 366
Query: 1127 RDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLA 1186
++ + + R A + W L ML + + L+ K ++ L
Sbjct: 367 KEALEETLQLNKRKALAYAGYL-WTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFL- 424
Query: 1187 VTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKI 1246
Y L + L + + + + E++F+Y PL + N G I
Sbjct: 425 -LYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLE----GLI 479
Query: 1247 DLLDLQVRYAPQMP--LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304
+ D+ Y P P VL+G++ T GE +VG +GSGKST+ L + +P GQ+
Sbjct: 480 EFQDVSFSY-PNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538
Query: 1305 LIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD-PLEESTDEQIWEALDKCQLGD 1363
L+DG+ + H L +++++ Q+PV+F G+VR N+ L ++ DE+I A D
Sbjct: 539 LLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHD 598
Query: 1364 EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQ 1423
+ + D++V E G S GQ+Q + + R L+++ ++L+LDEAT+++D + L+Q+
Sbjct: 599 FIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE 658
Query: 1424 TLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLV 1479
+ + + TVL IAHR+++V +D +L+L G + E L+E++ + LV
Sbjct: 659 S--RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ-GCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 2e-41
Identities = 136/614 (22%), Positives = 241/614 (39%), Gaps = 133/614 (21%)
Query: 305 VTGFLTVLYTLASYVGPYLIDTFVQYL---NGRRDFENEGYVLVSAFCVAKLVECLCQRF 361
++ L VL +A L+ + L + +L+ A + + L +R
Sbjct: 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERL 63
Query: 362 RVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHD 421
+ ++RA+L ++ +K L + +G T+ E + +
Sbjct: 64 ----GYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAA---TLALEGIEQL-----E 111
Query: 422 PWLVLFEVALSILILYKNLGIASLAALF----GTVIVMLVNIPL---------------- 461
P+ + L + L + + L A+F +++L+ PL
Sbjct: 112 PYYARY---LPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDAS 168
Query: 462 -------GRVQENFQDKLM-----------KSKDERMKATSEILR--NMRILKLQGWEMK 501
R+ +F D+L ++ +ER++ SE R M +L++
Sbjct: 169 EKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIA----- 223
Query: 502 FLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSA 561
FLS SA+ F ++S+A I + L G +
Sbjct: 224 FLS-------------------SAVLEFF-----AYLSIALVAVYIGFRL-LGEGDLTLF 258
Query: 562 IATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFF-------CLDDLQPDL----VEKQP 610
F L+ P + P L+ + SFF D L V
Sbjct: 259 AGLFVLILAPEFFQP------------LRDLGSFFHAAAAGEAAADKLFTLLESPVATPG 306
Query: 611 SGSSETA-----LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSC 665
SG ++I N S+ P L D+NL + G A+ G G+GKS+LL+
Sbjct: 307 SGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNL 366
Query: 666 ILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFGKE-MNRER 711
+LG + G +++ G ++V+Q+P++ +G I +NIL + + E
Sbjct: 367 LLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEE 426
Query: 712 YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS 771
A LD L + + G TVIGE G LSGGQ QR+ +ARAL + + L D+P +
Sbjct: 427 IIAALDQAGLLEFVP-KPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA 485
Query: 772 AVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINS 831
+DA T + + L L KTV+ +TH++E AD I+V+ +G++ + G + +L
Sbjct: 486 HLDAET-EQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544
Query: 832 GTDFMELVGAHEQA 845
+ L+ ++
Sbjct: 545 QGLYANLL-KQQEG 557
|
Length = 559 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 2e-41
Identities = 134/532 (25%), Positives = 242/532 (45%), Gaps = 47/532 (8%)
Query: 963 TGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSG 1022
T S L + +A+A+ R+ L A + L ++ + P+ +F++ G
Sbjct: 177 TLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVG 236
Query: 1023 RIINRASTDQSAADLGIPSLVGAYAFSIIRILGT---IAVM----SQVAWQV------FI 1069
+ R + + L G+ ++ +L +AVM + V +
Sbjct: 237 DTVARVRELEQIRNF----LTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYA 292
Query: 1070 VFVPAVGSCIW--YQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFR 1127
+ VG + + + SA S LV E+V+G TI++ E +F+
Sbjct: 293 LLSVFVGPILRKRVEDKFERSAAATSFLV------------ESVTGIETIKATATEPQFQ 340
Query: 1128 DRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLIS-IPKGFIDPAIAGLA 1186
+R + + Y +F + G ++++ +TFA L F + G + P G
Sbjct: 341 NRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSP---GQL 397
Query: 1187 VTYGLTLNTLLATLIWFAC---DLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSH 1243
V + + + ++ A D + I++ER+ P+EP A + P
Sbjct: 398 VAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPE----LR 453
Query: 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1303
G I +++ RYAP P VL ++ GE GIVG +GSGKSTL + L R+ P GQ
Sbjct: 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQ 513
Query: 1304 ILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIWEALDKCQ 1360
+L+DG+D+++ LR ++ ++ Q+ V+F ++R N+ +P + E + A
Sbjct: 514 VLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP--GAPFEHVIHAAKLAG 571
Query: 1361 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNL 1420
D + + +++V E G N S GQRQ + + R L+ +IL+ DEAT+++D ++ L
Sbjct: 572 AHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEAL 631
Query: 1421 IQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKS 1472
I + +R+ TV+ IAHR+++V D +++L G I E LL +
Sbjct: 632 IMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQG 683
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 2e-41
Identities = 73/228 (32%), Positives = 127/228 (55%), Gaps = 2/228 (0%)
Query: 1254 RYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL 1313
RY P P++L IS GE GIVGR+GSGKSTL + + R P G++L+DG D++L
Sbjct: 9 RYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLAL 68
Query: 1314 IGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTD-EQIWEALDKCQLGDEVRKKEGKL 1372
LR ++ ++ Q+ V+F ++R N+ + E++ EA D + +
Sbjct: 69 ADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGY 128
Query: 1373 DSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDC 1432
D+ V E G S GQRQ + + R L+ +IL+ DEAT+++D +++ I + + +
Sbjct: 129 DTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGR 188
Query: 1433 TVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVA 1480
TV+ IAHR+++V ++D ++++ G I E + LL ++ ++ L
Sbjct: 189 TVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA-ENGLYAYLYQ 235
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 2e-40
Identities = 88/267 (32%), Positives = 135/267 (50%), Gaps = 5/267 (1%)
Query: 1176 GFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEES- 1234
G + P + V L A L A L + ERI + + P+A +
Sbjct: 266 GRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEVL--DAAGPVAEGSAP 323
Query: 1235 RPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLF 1294
++L DL Y P P VL G+S P GE+ I+G +GSGKSTL+ TL
Sbjct: 324 AAGAVGLGKPTLELRDLSAGY-PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLA 382
Query: 1295 RIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD-PLEESTDEQIW 1353
+++P G++ +DG+ +S + ++R R+S+ QD +F+ TVR NL ++TDE++W
Sbjct: 383 GLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELW 442
Query: 1354 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASV 1413
AL++ L D +R LD+ + E G S G+RQ + L R LL + IL+LDE T +
Sbjct: 443 AALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHL 502
Query: 1414 DTATDNLIQQTLRQHFSDCTVLTIAHR 1440
D T + + + L S TV+ I H
Sbjct: 503 DAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 145 bits (370), Expect = 4e-40
Identities = 67/208 (32%), Positives = 93/208 (44%), Gaps = 56/208 (26%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK 683
+FS+ P LKD++L + G +VA+ G GSGKS+LL +L SG + + G
Sbjct: 7 SFSYP-GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVD 65
Query: 684 -------------AYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSF 730
AYV Q P++ SG I +NIL
Sbjct: 66 LRDLDLESLRKNIAYVPQDPFLFSGTIRENIL---------------------------- 97
Query: 731 GDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL 790
SGGQ+QRI IARAL +D I + D+ SA+D T L E L L
Sbjct: 98 -------------SGGQRQRIAIARALLRDPPILILDEATSALDPET-EALILEALRALA 143
Query: 791 SSKTVIYVTHQVEFLPAADLILVMKDGK 818
KTVI + H++ + AD I+V+ DG+
Sbjct: 144 KGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 1e-39
Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 6/223 (2%)
Query: 1241 PSH--GKIDLLDLQVRYAPQMP--LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI 1296
P H G + ++ Y P P LVLQ +S T GE T +VG +GSGKST++ L
Sbjct: 5 PDHLKGIVKFQNVTFAY-PTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF 63
Query: 1297 VEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD-PLEESTDEQIWEA 1355
+P GQ+L+DG IS L S++S++ Q+PV+F +++ N+ L+ + E + EA
Sbjct: 64 YQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEA 123
Query: 1356 LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT 1415
K + + D++V E G S GQ+Q V + R L++ ++L+LDEAT+++D
Sbjct: 124 AQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDA 183
Query: 1416 ATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLI 1458
++ +QQ L TVL IAHR+++V +D +L+L+ G I
Sbjct: 184 ESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 4e-39
Identities = 84/256 (32%), Positives = 137/256 (53%), Gaps = 19/256 (7%)
Query: 1226 EPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSG 1285
+PP AI+ R G ++ D+ Y V + +S G+ IVG TG+G
Sbjct: 321 DPPGAIDLGR------VKGAVEFDDVSFSYDNSRQGV-EDVSFEAKPGQTVAIVGPTGAG 373
Query: 1286 KSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD-PL 1344
KSTLI L R+ +P +G+ILIDG DI + LR ++++ QD +F ++ N+
Sbjct: 374 KSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 1345 EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKIL 1404
++TDE++ A ++ Q D + +K D+ V E G S G+RQ + + R LLK IL
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPIL 493
Query: 1405 MLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNP 1464
+LDEAT+++D T+ ++ L + T IAHR+++V ++D +L+ ++G + E
Sbjct: 494 ILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVE---- 549
Query: 1465 ANLLENKSSSFSQLVA 1480
S SF +LVA
Sbjct: 550 -------SGSFDELVA 558
|
Length = 588 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 1e-37
Identities = 140/561 (24%), Positives = 251/561 (44%), Gaps = 55/561 (9%)
Query: 926 LVPFILLAQTLFQILQIASNYWIVWATPGTKDVK-PVVTGSTLLIVYVALAVGSSFCVL- 983
L+ I++A + ++ IA +Y++ D P TL I+ + L + +
Sbjct: 157 LIVNIVIAAIIVTLISIAGSYYL----QKIIDTYIPHKMMGTLGIISIGLIIAYIIQQIL 212
Query: 984 --ARSTLLATAGYK-TATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAAD-LGI 1039
+ LL G + + ++ + + + +F PMSFF +G I++R + S D L
Sbjct: 213 SYIQIFLLNVLGQRLSIDIILSYIKH-LFELPMSFFSTRRTGEIVSRFTDASSIIDALAS 271
Query: 1040 PSLVGAYAFSIIRILGTIAVMSQVAWQVF---IVFVPAVGSCIW-YQQYYISSARELSRL 1095
L I+ I+G V + +F ++ +P I +++ + + +
Sbjct: 272 TILSLFLDMWILVIVGLFLVRQNM--LLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQA 329
Query: 1096 VGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRL 1155
V + +I E ++G TI+S E+ + +Y +F A +
Sbjct: 330 NAVLNSSII----EDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQA-- 383
Query: 1156 DMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLL---ATLIWFACDLENKI- 1211
I L+ + I A L + LTL L+ A L +F LEN I
Sbjct: 384 -----IKAVTKLILNV-----VILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIIN 433
Query: 1212 ---------ISVERIFQYTCIPSEPPLAIEESRPNDSWP-SHGKIDLLDLQVRYAPQMPL 1261
++ R+ + + SE + +G I + D+ Y
Sbjct: 434 LQPKLQAARVANNRLNEVYLVDSE----FINKKKRTELNNLNGDIVINDVSYSYGYGSN- 488
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
+L IS T KT IVG +GSGKSTL + L + +G+IL++G + I H LR
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548
Query: 1322 RLSIIPQDPVMFEGTVRSNL--DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1379
++ +PQ+P +F G++ NL E + ++IW A + ++ D++ ++++E
Sbjct: 549 FINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEE 608
Query: 1380 GENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439
G + S GQ+Q + L R LL SK+L+LDE+T+++DT T+ I L + D T++ +AH
Sbjct: 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL-LNLQDKTIIFVAH 667
Query: 1440 RITSVIDSDLVLLLNHGLIEE 1460
R++ SD +++L+HG I E
Sbjct: 668 RLSVAKQSDKIIVLDHGKIIE 688
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 3e-37
Identities = 85/272 (31%), Positives = 137/272 (50%), Gaps = 23/272 (8%)
Query: 592 IASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHN--PTLKDINLKVFHGMRV 649
+ +F P EK+ + S + I + I S + +N + G R+
Sbjct: 324 LVTFLETPLAHPQQGEKELA--SNDPVTIEAEDLE--ILSPDGKTLAGPLNFTLPAGQRI 379
Query: 650 AVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGK 696
A+ G G+GK+SLL+ +LG +P G+LK+ G + ++V Q+P + G
Sbjct: 380 ALVGPSGAGKTSLLNALLGFLP-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGT 438
Query: 697 IEDNILFGK-EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 755
+ DN+L G + + E+ L+ + + L +L G T IG++ LS GQ QR+ +AR
Sbjct: 439 LRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALAR 498
Query: 756 ALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMK 815
AL Q + L D+P +++DAH+ L + L +T + VTHQ+E L D I VM+
Sbjct: 499 ALLQPCQLLLLDEPTASLDAHS-EQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQ 557
Query: 816 DGKITQAGKYNDLINSGTDFMELVGAHEQALL 847
DG+I Q G Y +L +G F L+ AH Q +
Sbjct: 558 DGQIVQQGDYAELSQAGGLFATLL-AHRQEEI 588
|
Length = 588 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 2e-36
Identities = 93/319 (29%), Positives = 160/319 (50%), Gaps = 12/319 (3%)
Query: 289 VKLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAF 348
+ L++ +F ++ V +L + + P L+ FV++L+ G LV
Sbjct: 232 LSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTL 291
Query: 349 CVAKLVECLC-QRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQ--GQSSGEIINFM 405
+ +L++ +C RF ++ G++ R+AL A+I+ K T+SS++ ++G IIN M
Sbjct: 292 FLTQLIQSVCLHRFYYISIRC-GLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMM 350
Query: 406 TVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLG--- 462
+ D ER+ F Y W + LSIL+L + +G +L A V V+LV +PL
Sbjct: 351 STDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMA----VAVLLVTLPLNGAI 406
Query: 463 -RVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYV 521
+ Q + K+ K+ D R+KAT+E +RI K WE F++ I + R RE +L+
Sbjct: 407 MKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQ 466
Query: 522 YTSAISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISM 581
+SFV PT + F LL L + IA +L++P + +P V +
Sbjct: 467 LARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTT 526
Query: 582 IIQTKVSLQRIASFFCLDD 600
++Q VS++RI++F D+
Sbjct: 527 VLQFLVSIKRISTFLECDN 545
|
Length = 1560 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-36
Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 21/222 (9%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK 683
NFS+D P LKDIN + G VA+ G G+GK++L++ ++ G + + G
Sbjct: 9 NFSYD--EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGID 66
Query: 684 -------------AYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSF 730
V Q ++ SG I +NI G+ + V++A + +
Sbjct: 67 IRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATD--EEVIEAAKEAGAHDFIMK 124
Query: 731 ---GDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL 787
G TV+GE G NLS G++Q + IARA+ +D I + D+ S +D T L QE L
Sbjct: 125 LPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK-LIQEALE 183
Query: 788 GLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI 829
L+ +T I + H++ + AD ILV+ DGKI + G +++L+
Sbjct: 184 KLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELL 225
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 2e-36
Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 2/232 (0%)
Query: 1241 PSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA 1300
+ L ++ Y Q VL+G+S GEK ++GRTG GKSTL+Q L R +P
Sbjct: 334 ADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ 393
Query: 1301 AGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD-PLEESTDEQIWEALDKC 1359
G+IL++G I+ LR +S++ Q +F T+R NL ++DE + E L +
Sbjct: 394 QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQV 453
Query: 1360 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN 1419
L + +G L++ + E G S G+++ + + R LL + +L+LDE T +D T+
Sbjct: 454 GLEKLLEDDKG-LNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETER 512
Query: 1420 LIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENK 1471
I + L +H + TVL I HR+T + D + ++++G I E LL +
Sbjct: 513 QILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ 564
|
Length = 574 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 1e-35
Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 16/235 (6%)
Query: 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
++ + F + P L+DI+L + G VA+ G GSGKS+L++ I SG +
Sbjct: 1 VEFKNVTFRYP-GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFGK-EMNRERYNAVLDACSLKK 723
+ G V+Q ++ + + +NI +G+ RE A + +
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
+ L G TVIGERG+ LSGGQ+QRI IARAL +D I + D+ SA+D + L Q
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES-ERLVQ 178
Query: 784 EVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMEL 838
L L+ ++T + H++ + AD I+V++DGKI + G + +L+ G + +L
Sbjct: 179 AALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 3e-35
Identities = 122/495 (24%), Positives = 219/495 (44%), Gaps = 60/495 (12%)
Query: 369 LGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWLVLFE 428
IR+R ++ K L L Q +G +++ +T D+E+VA D ++VL
Sbjct: 87 RDIRVR------MFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVAS---AATDAFIVLVR 137
Query: 429 -----VALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKAT 483
+ L I++LY + + + + V+ +L+ R++ ++ S +
Sbjct: 138 ETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLR-RISKEIQNSMGQVTTVA 196
Query: 484 SEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATF 543
E L+ R++KL G + + + R K +ISS P +A+
Sbjct: 197 EETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISS------PITQLIASL 250
Query: 544 GTCILLNVPL--------ESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASF 595
++L + L +G + I L P+ +L +V + + + + + + +
Sbjct: 251 ALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTL 310
Query: 596 FCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHN------PTLKDINLKVFHGMRV 649
LD P EK A++ G+ + + P L I+L + G V
Sbjct: 311 --LD--SPP--EKDTGT---RAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETV 361
Query: 650 AVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGK 696
A+ G GSGKS+L++ I SG + L G A V+Q + +
Sbjct: 362 ALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDT 421
Query: 697 IEDNILFGK--EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754
I +NI +G+ + +R L A + ++ L G T IGE G+ LSGGQ+QR+ IA
Sbjct: 422 IANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIA 481
Query: 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVM 814
RAL +D+ I + D+ SA+D + + Q L L+ +T + + H++ + AD I+VM
Sbjct: 482 RALLKDAPILILDEATSALDNESERLV-QAALERLMQGRTTLVIAHRLSTIEKADRIVVM 540
Query: 815 KDGKITQAGKYNDLI 829
DG+I + G +N+L+
Sbjct: 541 DDGRIVERGTHNELL 555
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 3e-34
Identities = 78/218 (35%), Positives = 123/218 (56%), Gaps = 8/218 (3%)
Query: 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325
+S G+ IVG TG+GK+TLI L R+ +P GQILIDGIDI+ + LR ++
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT 413
Query: 1326 IPQDPVMFEGTVRSNLD-PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWS 1384
+ QD +F ++R N+ E +TDE+++EA D + K+ D+ V E G S
Sbjct: 414 VFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLS 473
Query: 1385 MGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSV 1444
G+RQ + + R +LK + IL+LDEAT+++D T+ ++ + + T IAHR+++V
Sbjct: 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTV 533
Query: 1445 IDSDLVLLLNHGLIEE---FDNPANLLENKSSSFSQLV 1479
++DLVL L+ G + E F L K F +L+
Sbjct: 534 RNADLVLFLDQGRLIEKGSFQE----LIQKDGRFYKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 2e-33
Identities = 73/210 (34%), Positives = 105/210 (50%), Gaps = 16/210 (7%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK 683
+FS+ + P L +++L + G +VA+ G VGSGKS+LL + G SG++ L GT
Sbjct: 9 SFSYP-NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTD 67
Query: 684 A-------------YVAQSPWIQSGKIEDNILFGK-EMNRERYNAVLDACSLKKDLEILS 729
YV Q + G + DNI G + ER + + +
Sbjct: 68 IRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHP 127
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789
G IGERG LSGGQ+Q + +ARAL D I L D+P SA+D ++ L + L L
Sbjct: 128 NGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKER-LRQL 186
Query: 790 LSSKTVIYVTHQVEFLPAADLILVMKDGKI 819
L KT+I +TH+ L D I+VM G+I
Sbjct: 187 LGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 3e-33
Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 19/229 (8%)
Query: 625 FSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK- 683
F++D P LKD++ + G +VA+ G GSGKS++L + SG++ + G
Sbjct: 8 FAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDI 65
Query: 684 ------------AYVAQSPWIQSGKIEDNILFGKE--MNRERYNAVLDACSLKKDLEILS 729
V Q + + I NI +G+ + E A A + +
Sbjct: 66 REVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQ-IHDKIMRFP 124
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789
G T++GERG+ LSGG+KQR+ IARA+ ++ I L D+ SA+D HT + Q L +
Sbjct: 125 DGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI-QAALRDV 183
Query: 790 LSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMEL 838
+T I + H++ + AD I+V+KDG+I + G + +L+ G + E+
Sbjct: 184 SKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 4e-33
Identities = 77/236 (32%), Positives = 121/236 (51%), Gaps = 27/236 (11%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEVPKISG- 675
+F + P LK ++L + G VA+ G+ G GKS+++S + GE+ + G
Sbjct: 7 SFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL-LDGV 65
Query: 676 ---TLKLCGTK---AYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILS 729
L L + V+Q P + G I +NI +GK V +A K I
Sbjct: 66 DIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGK--PDATDEEVEEAA---KKANIHD 120
Query: 730 F------GDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
F G T++GERG LSGGQKQRI IARAL ++ I L D+ SA+DA + L Q
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES-EKLVQ 179
Query: 784 EVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELV 839
E L + +T I + H++ + ADLI V+++G++ + G +++L+ + +LV
Sbjct: 180 EALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 4e-33
Identities = 110/495 (22%), Positives = 207/495 (41%), Gaps = 41/495 (8%)
Query: 372 RMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWLVLFEVAL 431
R+ +AL ++ K LS SG+++N + D + + + + P +V +
Sbjct: 88 RVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIA 147
Query: 432 SILIL--YKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRN 489
+ I + ++ +A L L ++++++ R F L + + ++ ++
Sbjct: 148 VVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQG 207
Query: 490 MRILKLQGWEMKFLSKIINLRKRETGWL----KKYVYTSAISSFVFWGAPTFVSVATFGT 545
L + G E + + L E WL K+ +T + + A V
Sbjct: 208 QAELLIFGAEDAYRT---ALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWM 264
Query: 546 CILLNVPLESGKMLSAI--ATFRLLQ--VPIYNLPDVISMIIQTKVSLQRIASFFCLDDL 601
+ + + F L+ P+ P + Q S +R L+D+
Sbjct: 265 AAQVGAGALAQPGAALALLVIFAALEAFEPL--APGAFQHLGQVIASARR------LNDI 316
Query: 602 QPDLVEKQPSGS----SETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGS 657
E + AL++ + +F++ LK+ NL + G +VA+ G GS
Sbjct: 317 LDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQT-KALKNFNLTLAQGEKVAILGRSGS 375
Query: 658 GKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFG 704
GKS+LL + G G++ L G + + + Q + SG + DN+
Sbjct: 376 GKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLA 435
Query: 705 K-EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDI 763
+ + E A L L+K LE G T +GE G LSGG+++R+ +ARAL D+ +
Sbjct: 436 NPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPL 495
Query: 764 YLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAG 823
+L D+P +D T + +L KT++ VTH++ L D I+V+ +GKI + G
Sbjct: 496 WLLDEPTEGLDPITERQVLA-LLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEG 554
Query: 824 KYNDLINSGTDFMEL 838
+ +L+ + + L
Sbjct: 555 THAELLANNGRYKRL 569
|
Length = 573 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 4e-33
Identities = 64/238 (26%), Positives = 123/238 (51%), Gaps = 14/238 (5%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309
DL++ +P + ++ T P G++ +VG +G+GK++L+ L + P G + I+GI
Sbjct: 354 DLEI-LSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGI 411
Query: 1310 DISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIWEALDKCQLGDEVR 1366
++ + R LS + Q+P + GT+R N+ +P +++DEQ+ +AL+ + + +
Sbjct: 412 ELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLP 469
Query: 1367 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR 1426
LD+ + + S+GQ Q + L R LL+ ++L+LDE TAS+D ++ L+ Q L
Sbjct: 470 LLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALN 529
Query: 1427 QHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEE---FDNPANLLENKSSSFSQLVAE 1481
T L + H++ + D + ++ G I + + L F+ L+A
Sbjct: 530 AASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAE----LSQAGGLFATLLAH 583
|
Length = 588 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 6e-33
Identities = 78/218 (35%), Positives = 126/218 (57%), Gaps = 3/218 (1%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322
L+ I+ P G+ +VGR+GSGKST+ L R + G+IL+DG D+ L LR++
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418
Query: 1323 LSIIPQDPVMFEGTVRSNL--DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380
++++ Q+ +F T+ +N+ E+ + EQI EA D + K + LD+ + ENG
Sbjct: 419 VALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG 478
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHR 1440
S GQRQ + + R LL+ S IL+LDEAT+++DT ++ IQ L + + T L IAHR
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538
Query: 1441 ITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQL 1478
++++ +D +L++ G I E A LL ++QL
Sbjct: 539 LSTIEKADEILVVEDGEIVERGTHAELLAQN-GVYAQL 575
|
Length = 582 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 1e-32
Identities = 122/510 (23%), Positives = 203/510 (39%), Gaps = 81/510 (15%)
Query: 348 FCVAKLVECLCQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTV 407
+ L E R QL R L+ + L + QG+ SGE+
Sbjct: 58 ALLGWLQERAAARAAAAVKSQL----RERLLEAV----AALGPRWLQGRPSGELATLALE 109
Query: 408 DAERVAD-FSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPL----- 461
E + F+ Y+ P LVL V + + IL ++ L ++L+ PL
Sbjct: 110 GVEALDGYFARYL--PQLVL-AVIVPLAILAAVFPQDWISGL-----ILLLTAPLIPIFM 161
Query: 462 ---GRVQENFQDKLMKSKDERMKATSEILRNMRILKL---QGWEMKFLSKII-NLRKRET 514
G + K + + LR + LKL + + + R+R
Sbjct: 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIRRSSEEYRERTM 221
Query: 515 GWLKKYVYTSAISSFV--FWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPI 572
L+ + +SS V + +SVA + + L +G + A F LL P
Sbjct: 222 RVLR----IAFLSSAVLELFAT---LSVA--LVAVYIGFRLLAGDLDLATGLFVLLLAPE 272
Query: 573 YNLPDVISMIIQTKVSLQRIASFF--------CLDDLQPDLVEK-QPSGSSETALDIVDG 623
+ LP L+++ + + + L L +P
Sbjct: 273 FYLP------------LRQLGAQYHARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAP 320
Query: 624 NFSWDISSH-----NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK 678
+ + S P L+ ++ V G RVA+ G G+GKS+LL+ +LG V G++
Sbjct: 321 SLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380
Query: 679 LCGTK-------------AYVAQSPWIQSGKIEDNILFGK-EMNRERYNAVLDACSLKKD 724
+ G A+V Q P++ +G I +NI + + + L+ L +
Sbjct: 381 VNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEF 440
Query: 725 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQE 784
+ L G T IGE G LSGGQ QR+ +ARA +D+ + L D+P + +DA T + + E
Sbjct: 441 VAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEV-LE 499
Query: 785 VLLGLLSSKTVIYVTHQVEFLPAADLILVM 814
L L +TV+ VTH++ AD I+V+
Sbjct: 500 ALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 2e-32
Identities = 68/238 (28%), Positives = 130/238 (54%), Gaps = 3/238 (1%)
Query: 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1302
G I++ + RY P PL+L +S GE IVG +GSGKSTL++ L P +G
Sbjct: 449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508
Query: 1303 QILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLG 1362
+ DG D++ + + +R +L ++ Q+ + G++ N+ T ++ WEA L
Sbjct: 509 SVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLA 568
Query: 1363 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ 1422
+++R + + ++E G S GQRQ + + R L+++ +IL+ DEAT+++D T ++
Sbjct: 569 EDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVS 628
Query: 1423 QTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVA 1480
++L + T + IAHR++++ ++D + +L+ G + + L+ + F+QL
Sbjct: 629 ESLER--LKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA-REGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-31
Identities = 68/246 (27%), Positives = 113/246 (45%), Gaps = 23/246 (9%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L G+S GE G++G G+GK+TL++ L +++P +G+IL+ G D+ +R
Sbjct: 20 ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVV-KEPAKVRR 78
Query: 1322 RLSIIPQDPVMFEG-TVRSNLD-------PLEESTDEQIWEALDKCQLGDEVRKKEGKLD 1373
R+ +PQ+P ++ TVR NL+ +E +E+I E L+ L D+ KK L
Sbjct: 79 RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTL- 137
Query: 1374 SKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSD-- 1431
S G +Q + + LL ++L+LDE T+ +D + I + LR+ +
Sbjct: 138 ----------SGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGG 187
Query: 1432 CTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSF 1490
T+L H + + D V++LN G I P L E + L +
Sbjct: 188 VTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELL 247
Query: 1491 ENLAGN 1496
E L
Sbjct: 248 EGLKLV 253
|
Length = 293 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 4e-31
Identities = 78/242 (32%), Positives = 118/242 (48%), Gaps = 17/242 (7%)
Query: 612 GSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP 671
E + V NF++ P L +NL V G VA+ G G+GKS+L +L
Sbjct: 334 LRGEIEFEQV--NFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD 391
Query: 672 KISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFGK-EMNRERYNAVLD 717
SG + L G A V Q P + + + +NI +G+ + E A
Sbjct: 392 PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAAR 451
Query: 718 ACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHT 777
A + + L G T +GERG+ LSGGQ+QRI IARA+ +D+ I L D+ SA+DA +
Sbjct: 452 AAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES 511
Query: 778 GSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFME 837
L Q+ L L+ +T + + H++ + AD I+VM G+I G + +LI G +
Sbjct: 512 -EQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYAR 570
Query: 838 LV 839
L
Sbjct: 571 LA 572
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 5e-31
Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 42/212 (19%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
+++ ++ RY P VL+ +S + GE I+G +GSGKSTL + + ++ P +G++
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEV 1365
+DG DIS ++L + +PQD +F G++ N+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 1366 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTL 1425
S GQRQ + L R L +IL+LDE + +D + + Q +
Sbjct: 97 -----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
Query: 1426 RQ-HFSDCTVLTIAHRITSVIDSDLVLLLNHG 1456
+ T + IAHR ++ +D +L+L G
Sbjct: 140 AALKAAGATRIVIAHRPETLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-30
Identities = 134/577 (23%), Positives = 256/577 (44%), Gaps = 68/577 (11%)
Query: 303 VLVTGFLTVLYTLASYVGPY----LIDTFV-QYLNGRRDFENEGYVLVSAFCVAKLVECL 357
++ ++ TL S G Y +IDT++ + G + G + +A +++ +
Sbjct: 158 IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLI------IAYIIQQI 211
Query: 358 CQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVAD--- 414
++F L LG R+ +I L + +GEI++ T DA + D
Sbjct: 212 LSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALA 270
Query: 415 ---FSWYIHDPWLVLFEVALSILILYKN--LGIASLAA--LFGTVIVMLVNIPLGRVQEN 467
S ++ D W++ V + + ++ +N L + SL + ++ +I++ +
Sbjct: 271 STILSLFL-DMWIL---VIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDA 326
Query: 468 FQDKLMKSKD--------ERMKA-TSEILRNMRILKLQGWEMKFLSKIINLRKRETGW-L 517
Q + + E +K+ TSE R +I G +L+K +K + G
Sbjct: 327 MQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFG---DYLNKSFKYQKADQGQQA 383
Query: 518 KKYVYTSAISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPD 577
K V ++ + W G +++ L G++++ A P+ N+ +
Sbjct: 384 IKAVTKLILNVVILW----------TGAYLVMRGKLTLGQLITFNALLSYFLTPLENIIN 433
Query: 578 VISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLK 637
+ + +V+ R+ + +D + +K+ + + DIV + S+ + L
Sbjct: 434 LQPKLQAARVANNRLNEVYLVDSEFIN--KKKRTELNNLNGDIVINDVSYSYGYGSNILS 491
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------A 684
DI+L + + + G GSGKS+L ++G SG + L G
Sbjct: 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551
Query: 685 YVAQSPWIQSGKIEDNILFGKEMN--RERYNAVLDACSLKKDLEILSFGDQTVIGERGIN 742
Y+ Q P+I SG I +N+L G + N ++ A + +K D+E + G QT + E G +
Sbjct: 552 YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSS 611
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQV 802
+SGGQKQRI +ARAL DS + + D+ S +D T + +L L KT+I+V H++
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL--NLQDKTIIFVAHRL 669
Query: 803 EFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELV 839
+D I+V+ GKI + G +++L++ + L+
Sbjct: 670 SVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-29
Identities = 67/200 (33%), Positives = 100/200 (50%), Gaps = 15/200 (7%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA--------- 684
P L +++L + G +VA+ G +GSGKS+LL +LG G++ L G
Sbjct: 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLR 538
Query: 685 ----YVAQSPWIQSGKIEDNILFGK-EMNRERYNAVLDACSLKKDLEILSFGDQTVIGER 739
YV Q P + G + DNI G + E + + + + G IGER
Sbjct: 539 RNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGER 598
Query: 740 GINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVT 799
G +LSGGQ+Q + +ARAL +D I L D+P SA+D + L L+ KT++ VT
Sbjct: 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR-LKRWLAGKTLVLVT 657
Query: 800 HQVEFLPAADLILVMKDGKI 819
H+ L D I+VM +G+I
Sbjct: 658 HRTSLLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 39/215 (18%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
+ + ++ Y Q VL+ +S GEK ++GR+GSGKSTL+Q L ++P G+I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEV 1365
+DG+ +S + L S +S++ Q P +F+ T+R+NL
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 1366 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTL 1425
G +S G+RQ + L R+LL+ + I++LDE T +D T+ + +
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141
Query: 1426 RQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEE 1460
+ D T++ I H +T + D +L L +G I
Sbjct: 142 FEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-29
Identities = 82/241 (34%), Positives = 120/241 (49%), Gaps = 18/241 (7%)
Query: 604 DLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLL 663
D E P G E ++I F++ + H P L+++N + G + +CG GSGKS+LL
Sbjct: 302 DGSEPVPEGRGELDVNI--RQFTYPQTDH-PALENVNFTLKPGQMLGICGPTGSGKSTLL 358
Query: 664 SCILGEVPKISG----------TLKL---CGTKAYVAQSPWIQSGKIEDNILFGK-EMNR 709
S I G L+L A V+Q+P++ S + +NI G+ + +
Sbjct: 359 SLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQ 418
Query: 710 ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDP 769
+ V S+ D+ L G T +GERG+ LSGGQKQRI IARAL +++I + DD
Sbjct: 419 QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDA 478
Query: 770 FSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI 829
SAVD T + L +TVI H++ L A ILVM+ G I Q G ++ L
Sbjct: 479 LSAVDGRTEHQILHN-LRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLA 537
Query: 830 N 830
Sbjct: 538 Q 538
|
Length = 569 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 3e-29
Identities = 63/204 (30%), Positives = 105/204 (51%), Gaps = 14/204 (6%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---TK------ 683
P LK+I+ + G +V + G GSGKSSLL + V SG++ + G +K
Sbjct: 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDL 76
Query: 684 ----AYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGER 739
+ + Q P + SG I N+ E + E L+ LK+ +E L G TV+ E
Sbjct: 77 RSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEG 136
Query: 740 GINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVT 799
G NLS GQ+Q + +ARAL + S I + D+ ++VD T + + Q+ + TV+ +
Sbjct: 137 GENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI-QKTIREAFKDCTVLTIA 195
Query: 800 HQVEFLPAADLILVMKDGKITQAG 823
H+++ + +D ILV+ G++ +
Sbjct: 196 HRLDTIIDSDRILVLDKGRVVEFD 219
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 8e-29
Identities = 74/210 (35%), Positives = 96/210 (45%), Gaps = 49/210 (23%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------AYVA 687
L+DINL V G VA+ G G GKS+LL I G SG + L G YV
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVF 78
Query: 688 QS----PWIQSGKIEDNILFG-------KEMNRERYNAVLDACSLKKDLEILSFGD---- 732
Q PW+ + DN+ G K RER +L+ L F D
Sbjct: 79 QEDALLPWL---TVLDNVALGLELRGKSKAEARERAKELLELVGLAG------FEDKYPH 129
Query: 733 QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS 792
Q LSGG +QR+ IARAL + L D+PF A+DA T L Q+ LL L
Sbjct: 130 Q---------LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREEL-QDELLRLWEE 179
Query: 793 --KTVIYVTHQVE---FLPAADLILVMKDG 817
KTV+ VTH V+ +L AD ++V+ +
Sbjct: 180 TRKTVLLVTHDVDEAVYL--ADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-28
Identities = 59/209 (28%), Positives = 90/209 (43%), Gaps = 58/209 (27%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309
+L RY + L +S T GE +VG GSGKSTL++ + +++P +G+ILIDG
Sbjct: 4 NLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGK 61
Query: 1310 DISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKE 1369
DI+ + L +LR R+ +P QL
Sbjct: 62 DIAKLPLEELRRRIGYVP--------------------------------QL-------- 81
Query: 1370 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF 1429
S GQRQ V L R LL +L+LDE T+ +D A+ + + LR+
Sbjct: 82 --------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELA 127
Query: 1430 SD-CTVLTIAHRITSVID-SDLVLLLNHG 1456
+ TV+ + H +D V++L G
Sbjct: 128 EEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 21/221 (9%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ-- 693
L +I+L++ G V + G GSGKS+L I +G + + G +A W++
Sbjct: 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQ 77
Query: 694 -----------SGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEI---LSFGDQTVIGE 738
+ I DNI M+ ER V++A L + L G T++GE
Sbjct: 78 VGVVLQENVLFNRSIRDNIALADPGMSMER---VIEAAKLAGAHDFISELPEGYDTIVGE 134
Query: 739 RGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYV 798
+G LSGGQ+QRI IARAL + I +FD+ SA+D + H + + + +TVI +
Sbjct: 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES-EHAIMRNMHDICAGRTVIII 193
Query: 799 THQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELV 839
H++ + AD I+VM+ G+I + G +++L+ + L
Sbjct: 194 AHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-28
Identities = 75/266 (28%), Positives = 118/266 (44%), Gaps = 33/266 (12%)
Query: 561 AIATFRLLQVPIYN----LPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSET 616
+A LL + + LP + + + + +RI ++ GS+
Sbjct: 272 TLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERI------VEVLDAAGP-VAEGSAPA 324
Query: 617 ALDIVDGNFSW---DISSH----NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE 669
A + G + D+S+ P L ++L + G RVA+ G GSGKS+LL+ + G
Sbjct: 325 AGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGL 384
Query: 670 VPKISGTLKLCGTKA-------------YVAQSPWIQSGKIEDNILFGK-EMNRERYNAV 715
+ + G + L G AQ + + +N+ + + E A
Sbjct: 385 LDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAA 444
Query: 716 LDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA 775
L+ L L L G TV+GE G LSGG++QR+ +ARAL D+ I L D+P +DA
Sbjct: 445 LERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDA 504
Query: 776 HTGSHLFQEVLLGLLSSKTVIYVTHQ 801
T L E LL LS +TV+ +TH
Sbjct: 505 ETADELL-EDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 68/225 (30%), Positives = 101/225 (44%), Gaps = 41/225 (18%)
Query: 620 IVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL 679
+ + +FS+ P L DI+L + G V + G GSGKS+LL + G + SG + +
Sbjct: 2 LKNLSFSYP-DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 680 CGTKAYVAQSPWIQSGKI----------------EDNILFG--------KEMNRERYNAV 715
G K S K+ E+ + FG +E+ ER
Sbjct: 61 DG-KDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEI-EERVEEA 118
Query: 716 LDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA 775
L+ L+ + F LSGGQKQR+ IA L D DI L D+P + +D
Sbjct: 119 LELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDP 167
Query: 776 HTGSHLFQEVLLGLLSS-KTVIYVTHQVEFLPA-ADLILVMKDGK 818
L E+L L + KT+I VTH ++ L AD ++V++DGK
Sbjct: 168 AGRRELL-ELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-28
Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 39/261 (14%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
I++ +L V Y + VL+ IS + GE T ++G G+GKSTL++ + +++P++G+I
Sbjct: 5 IEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQD-------PV-------MFEGTVRSNLDPLEESTDEQ 1351
I G + R R+ +PQ P+ + + L + E+
Sbjct: 63 IFGKPVRKR---RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119
Query: 1352 IWEALDKCQLGDEVRKKE-GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEAT 1410
+ EAL++ + D +R ++ G+L S GQ+Q V L R L + +L+LDE
Sbjct: 120 VDEALERVGMED-LRDRQIGEL-----------SGGQKQRVLLARALAQNPDLLLLDEPF 167
Query: 1411 ASVDTATDNLIQQTLRQHFSD-CTVLTIAHRITSVID-SDLVLLLNHGLI-----EEFDN 1463
VD A I L++ + TVL + H + V+ D V+ LN LI EE
Sbjct: 168 TGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLT 227
Query: 1464 PANLLENKSSSFSQLVAEYTL 1484
NL + S + +A Y
Sbjct: 228 EENLEKAFGGSLAHALAGYRH 248
|
Length = 254 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 3e-28
Identities = 72/203 (35%), Positives = 99/203 (48%), Gaps = 41/203 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------AYVA 687
L+DI+L V G VA+ G G GKS+LL I G SG + + G YV
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79
Query: 688 QS----PWIQSGKIEDNILFGKEMN-------RERYNAVLDACSLKKDLEILSFGDQTVI 736
Q PW+ + DN+ G E+ RER +L+ L F +
Sbjct: 80 QQDALLPWL---TVLDNVALGLELQGVPKAEARERAEELLELVGLSG------FENAY-P 129
Query: 737 GERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS--KT 794
+ LSGG +QR+ +ARAL D D+ L D+PFSA+DA T L QE LL + KT
Sbjct: 130 HQ----LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL-QEELLDIWRETGKT 184
Query: 795 VIYVTHQVE---FLPAADLILVM 814
V+ VTH ++ FL AD ++V+
Sbjct: 185 VLLVTHDIDEAVFL--ADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 65/225 (28%), Positives = 104/225 (46%), Gaps = 34/225 (15%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309
DL V Y VL+ +S GE IVG G+GKSTL++ + +++P +G I + G
Sbjct: 4 DLTVSY--GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK 61
Query: 1310 DISLIGLHDLRSRLSIIPQD-------PVMFEGTVRSNLDP-------LEESTDEQIWEA 1355
+ R R+ +PQ P+ V L L ++ ++ EA
Sbjct: 62 PLE-----KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEA 116
Query: 1356 LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT 1415
L++ L + ++ G+L S GQ+Q V L R L++ +L+LDE A VD
Sbjct: 117 LERVGLSELADRQIGEL-----------SGGQQQRVLLARALVQDPDLLLLDEPFAGVDP 165
Query: 1416 ATDNLIQQTLRQ-HFSDCTVLTIAHRITSVIDS-DLVLLLNHGLI 1458
T I + LR+ T+L + H + V++ D VLLLN ++
Sbjct: 166 KTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-27
Identities = 82/268 (30%), Positives = 118/268 (44%), Gaps = 41/268 (15%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
+ D+NL + G + + G GSGK++ L I + SG + + G
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK 76
Query: 684 -AYVAQSPWIQSG-----KIEDNILFGKEM---NRERYNAVLDACSLKKDLEILSFGDQT 734
YV Q Q G + +NI ++ ++ER D L+ + D
Sbjct: 77 IGYVIQ----QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYAD-- 130
Query: 735 VIGERGIN-LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL--LS 791
R + LSGGQ+QR+ +ARAL D I L D+PF A+D T L QE + L
Sbjct: 131 ----RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQL-QEEIKELQKEL 185
Query: 792 SKTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYND-LINSGTDFME-LVGAHE--QAL 846
KT+++VTH + E L AD I VM G+I Q ++ L N DF+E G E L
Sbjct: 186 GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRL 245
Query: 847 LALGSIEGRPAS-ERASGENGGTVIANR 873
L+L S+ E A GE +R
Sbjct: 246 LSLVSVADAVRRGEPADGEPLLEGFVDR 273
|
Length = 309 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 73/240 (30%), Positives = 120/240 (50%), Gaps = 37/240 (15%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----PA 1300
I+L DL V Y + L+ IS P GE T ++G +G GKSTL++ L R+ + P
Sbjct: 1 IELRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1301 AGQILIDGIDISLIGLHD--LRSRLSIIPQDPVMFEGTVRSNLD--------PLEESTDE 1350
G++L+DG DI + + LR R+ ++ Q P F G++ N+ L+E DE
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE 118
Query: 1351 QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEAT 1410
++ EAL K L DEV+ + L S GQ+Q +CL R L ++L+LDE T
Sbjct: 119 RVEEALRKAALWDEVKDRLHALG---------LSGGQQQRLCLARALANEPEVLLLDEPT 169
Query: 1411 ASVDTATDNLIQQTLRQHFSDCTVLTIAH------RITSVIDSDLVLLLNHGLIEEFDNP 1464
+++D + I++ + + + T++ + H R+ +D L +G + EF
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARV-----ADRTAFLLNGRLVEFGPT 224
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 4e-27
Identities = 68/216 (31%), Positives = 96/216 (44%), Gaps = 40/216 (18%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 683
L D++L V G +A+ G G GK++LL I G SG + + G
Sbjct: 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR 72
Query: 684 --AYVAQS----PWIQSGKIEDNILFG-------KEMNRERYNAVLDACSLKKDLEILSF 730
V Q P + + +NI FG K R R +L+ + +
Sbjct: 73 NIGMVFQDYALFPHL---TVAENIAFGLKLRGVPKAEIRARVRELLEL------VGLEGL 123
Query: 731 GDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL 790
++ LSGGQ+QR+ +ARAL ++ + L D+P SA+DA L +E L L
Sbjct: 124 LNRYPHE-----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE-LKELQ 177
Query: 791 SS--KTVIYVTH-QVEFLPAADLILVMKDGKITQAG 823
T IYVTH Q E L AD I VM +G+I Q G
Sbjct: 178 RELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 5e-27
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 47/201 (23%)
Query: 620 IVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL 679
I + +F + L +++L + G VA+ G GSGKS+LL I G + SG + +
Sbjct: 2 IENLSFRYG---GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 680 CGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGER 739
G + L++ + + Q
Sbjct: 59 DGKD--------------------------------IAKLPLEELRRRIGYVPQ------ 80
Query: 740 GINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS-KTVIYV 798
LSGGQ+QR+ +ARAL + D+ L D+P S +D + E+L L +TVI V
Sbjct: 81 ---LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASR-ERLLELLRELAEEGRTVIIV 136
Query: 799 THQVEFL-PAADLILVMKDGK 818
TH E AAD ++V+KDGK
Sbjct: 137 THDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 6e-27
Identities = 67/210 (31%), Positives = 115/210 (54%), Gaps = 5/210 (2%)
Query: 1252 QVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI 1311
Q Y L+ ++ T G+ GI G TGSGKSTL+ + R + + G I I +
Sbjct: 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL 379
Query: 1312 SLIGLHDLRSRLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIWEALDKCQLGDEVRKK 1368
+ + L RSRL+++ Q P +F TV +N+ P ++T ++I + D++ +
Sbjct: 380 TKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP--DATQQEIEHVARLASVHDDILRL 437
Query: 1369 EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQH 1428
D++V E G S GQ+Q + + R LL ++IL+LD+A ++VD T++ I LRQ
Sbjct: 438 PQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQW 497
Query: 1429 FSDCTVLTIAHRITSVIDSDLVLLLNHGLI 1458
TV+ AHR++++ ++ +L++ HG I
Sbjct: 498 GEGRTVIISAHRLSALTEASEILVMQHGHI 527
|
Length = 569 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 6e-27
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 37/194 (19%)
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------- 683
+P L+D++ +V G +A+ G G+GKS+LL ILG + SG++++ G
Sbjct: 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKR 69
Query: 684 -AYVAQSPWIQSG---KIEDNIL--------FGKEMNRERYNAVLDACSLKKDLEILSFG 731
YV Q I + D +L + +++ V +A L++ + +
Sbjct: 70 IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEA--LER-VGLSELA 126
Query: 732 DQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS 791
D+ IGE LSGGQ+QR+ +ARAL QD D+ L D+PF+ VD T QE + LL
Sbjct: 127 DRQ-IGE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT-----QEDIYELLR 176
Query: 792 S-----KTVIYVTH 800
T++ VTH
Sbjct: 177 ELRREGMTILVVTH 190
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 6e-27
Identities = 65/240 (27%), Positives = 119/240 (49%), Gaps = 25/240 (10%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
I+ +L RY + L+ +S GE+ ++G GSGKSTL++ L +++P +G++L
Sbjct: 4 IEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 1306 IDGIDISLI-GLHDLRSRLSIIPQDPVM--FEGTVRSNLD--PL-----EESTDEQIWEA 1355
+DG+D S L +LR ++ ++ Q+P F TV + E +E++ EA
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA 122
Query: 1356 LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT 1415
L+ L + + + L S GQ+Q V + VL +IL+LDE TA +D
Sbjct: 123 LELVGLEELLDRPPFNL-----------SGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP 171
Query: 1416 ATDNLIQQTLR--QHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKS 1472
+ + L+ + T++ + H + V++ +D V++L+ G I +PA + +
Sbjct: 172 KGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAE 231
|
Length = 235 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 4e-26
Identities = 120/517 (23%), Positives = 214/517 (41%), Gaps = 52/517 (10%)
Query: 343 VLVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEII 402
+L L L R F L ++G ++ AL I+ + + + G +
Sbjct: 47 MLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRRGSGDGLQALR 106
Query: 403 NFMTVDAERVADFSWYIHD-PWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPL 461
+ + + D PW+ ++ L +L+ +GI AL G V+++ + +
Sbjct: 107 DLDQLRQFLTGPGLFAFFDAPWMPIY--LLVCFLLHPWIGIL---ALGGAVVLVGLAL-- 159
Query: 462 GRVQENF-QDKLMKSKDERMKATSEI---LRNMRILKLQGWEMKFLSKIINLRKRETGWL 517
+ + L ++ + ++A + LRN +++ G M L+K + + +L
Sbjct: 160 --LNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGM-MGNLTK--RWGRFHSKYL 214
Query: 518 KKYVYTSAISSFVFWGAPTF-----VSVATFGTCILLNVPLESGKML-SAIATFRLLQVP 571
S + + + F V G + ++ + G M+ +I R L P
Sbjct: 215 SAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALA-P 273
Query: 572 IYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVE-KQPSGS-SETALDIVDGNFSWDI 629
I + + +R+ + + +P G S + IV
Sbjct: 274 IDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVPPG----- 328
Query: 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------- 681
PTL+ I+ + G +A+ G GSGKS+L I+G P SG+++L G
Sbjct: 329 -GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387
Query: 682 -----TKAYVAQSPWIQSGKIEDNIL-FGKEMNRERYNAVLDACSLKKDLE-ILSF--GD 732
Y+ Q + G + +NI FG+ + E +++A L E IL G
Sbjct: 388 ETFGKHIGYLPQDVELFPGTVAENIARFGENADPE---KIIEAAKLAGVHELILRLPDGY 444
Query: 733 QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS 792
TVIG G LSGGQ+QRI +ARALY D + + D+P S +D L +
Sbjct: 445 DTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARG 504
Query: 793 KTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI 829
TV+ +TH+ L D ILV++DG+I + G+ ++++
Sbjct: 505 ITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-26
Identities = 68/224 (30%), Positives = 108/224 (48%), Gaps = 28/224 (12%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309
+L Y + +L +S + P GE TGI+G GSGKSTL++ L +++P +G++L+DG
Sbjct: 7 NLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGK 64
Query: 1310 DISLIGLHDLRSRLSIIPQDPVMFEG-TVR----------SNLDPLEESTDEQI-WEALD 1357
DI+ + +L +L+ +PQ P G TV L DE+I EAL+
Sbjct: 65 DIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALE 124
Query: 1358 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT 1417
L + +L S G+RQ V + R L + + IL+LDE T+ +D A
Sbjct: 125 LLGLEHLADRPVDEL-----------SGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173
Query: 1418 DNLIQQTLRQ--HFSDCTVLTIAHRITSVID-SDLVLLLNHGLI 1458
+ + LR TV+ + H + +D ++LL G I
Sbjct: 174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKI 217
|
Length = 258 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 8e-26
Identities = 71/220 (32%), Positives = 97/220 (44%), Gaps = 38/220 (17%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 683
LKD+NL + G V + G G GKS+LL I G SG + + G
Sbjct: 16 FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKR 75
Query: 684 --AYVAQS----PWIQSGKIEDNILFG-------KEMNRERYNAVLDACSLKKDLEILSF 730
A V Q+ P + +NI FG K +R V L+ L
Sbjct: 76 GIAMVFQNYALYP---HMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN---- 128
Query: 731 GDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-LGL 789
+ LSGGQ+QR+ +ARAL + ++L D+P S +DA + E+ L
Sbjct: 129 ---RKPLQ----LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE 181
Query: 790 LSSKTVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDL 828
T IYVTH QVE + AD I+VM DG+I Q G +L
Sbjct: 182 RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221
|
Length = 338 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 9e-26
Identities = 92/311 (29%), Positives = 157/311 (50%), Gaps = 28/311 (9%)
Query: 572 IYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQ---PSGSSETALDIVDGNFSWD 628
I L V++ I Q ++ ++ FF ++D PD+ + G + A++ D +FS+D
Sbjct: 286 IGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYD 345
Query: 629 ISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV--PKISGTLKLCGTK--- 683
S ++D++ + G VA+ G G+GKS+L++ +L V P+ SG + + GT
Sbjct: 346 NSR--QGVEDVSFEAKPGQTVAIVGPTGAGKSTLIN-LLQRVFDPQ-SGRILIDGTDIRT 401
Query: 684 ----------AYVAQSPWIQSGKIEDNILFGKE--MNRERYNAVLDACSLKKDLEILSFG 731
A V Q + + IEDNI G+ + E A + +E G
Sbjct: 402 VTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAA-AERAQAHDFIERKPDG 460
Query: 732 DQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS 791
TV+GERG LSGG++QR+ IARAL +D I + D+ SA+D T + + + L L+
Sbjct: 461 YDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKV-KAALDELMK 519
Query: 792 SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQALLALGS 851
+T + H++ + AD ILV +G++ ++G +++L+ G F L Q +L
Sbjct: 520 GRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAAL--LRAQGMLQEDE 577
Query: 852 IEGRPASERAS 862
+PA+E A+
Sbjct: 578 RRKQPAAEGAN 588
|
Length = 588 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 68/218 (31%), Positives = 108/218 (49%), Gaps = 22/218 (10%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309
+L Y L IS T GE IVG GSGKSTL++ L ++ P +G++L+DG
Sbjct: 4 NLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGK 63
Query: 1310 DISLIGLHDLRSRLSIIPQDP--VMFEGTVRS-------NLDPLEESTDEQIWEALDKCQ 1360
D++ + L +LR ++ ++ Q+P F TV NL EE +E++ EAL+
Sbjct: 64 DLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVG 123
Query: 1361 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNL 1420
L EG D S GQ+Q V + VL IL+LDE TA +D A
Sbjct: 124 L-------EGLRDRSP----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 1421 IQQTLRQ-HFSDCTVLTIAHRITSVID-SDLVLLLNHG 1456
+ + L++ T++ + H + +++ +D V++L G
Sbjct: 173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 74/249 (29%), Positives = 131/249 (52%), Gaps = 22/249 (8%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304
+I+ + V Y+ +L+ IS F GG IVG +G+GKSTLI+ + R+++P G I
Sbjct: 3 EIEFKE--VSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 1305 LIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD--PL---EESTDEQIWEALDKC 1359
LIDG+DI I + DLR ++ ++ Q P +FEGTV+ N++ P+ E++ D + + L
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYY--LSIV 118
Query: 1360 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN 1419
L E ++ K N S G+ Q V + R L ++L+LDE T+++D +
Sbjct: 119 GLNKEYATRDVK----------NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTE 168
Query: 1420 LIQQTLR--QHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFS 1476
+I++ + ++ + TV+ I H + D LN G++ E+ + N + +
Sbjct: 169 IIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228
Query: 1477 QLVAEYTLR 1485
+L + L+
Sbjct: 229 KLFIQGKLK 237
|
Length = 241 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-25
Identities = 126/528 (23%), Positives = 212/528 (40%), Gaps = 91/528 (17%)
Query: 353 LVECLCQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIIN-------FM 405
+ L R L ++G R+ L ++ + + + + F+
Sbjct: 74 AFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPLRDLDQVRQFL 133
Query: 406 T-------VDAERVADFSWYIHDPWLVLFEVALSILILY---KNLGIASLAALFGTVIVM 455
T DA PW+ L+ + +++ LG L AL G +I++
Sbjct: 134 TGTGLTAFFDA------------PWMPLY-----LAVIFLFHPWLG---LIALAGAIILV 173
Query: 456 LVNIPLGRVQENFQDKLMKSKDER-MKATSEI---LRNMRILKLQGWEMKFLSKIINLRK 511
+ L + E K +K E ++A LRN +++ G M + NL K
Sbjct: 174 V----LALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMG--M-----LGNLAK 222
Query: 512 R----ETGWLKKYVYTSAISSFVFWGAPTF-----VSVATFGTCILLNVPLESGKML-SA 561
R +L S + + +V G +++ + G M+ +
Sbjct: 223 RWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGS 282
Query: 562 IATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIV 621
I + R L PI + + S +R+ P E+ P + + AL V
Sbjct: 283 ILSGRALA-PIDLAIANWKQFVAARQSYKRLNELL---AELPAAAERMPLPAPQGALS-V 337
Query: 622 DGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681
+ + P LK I+ + G + + G GSGKS+L ++G P SG+++L G
Sbjct: 338 ERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDG 397
Query: 682 TK-------------AYVAQSPWIQSGKIEDNIL-FGKEMNRERYNAVLDACSLKK--DL 725
Y+ Q + G I +NI FG+E + E V++A L +L
Sbjct: 398 ADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPE---KVIEAARLAGVHEL 454
Query: 726 EILSF--GDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
IL G T IGE G LSGGQ+QRI +ARALY D + + D+P S +D+ G
Sbjct: 455 -ILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS-EGEAALA 512
Query: 784 EVLLGLLSSK-TVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLIN 830
+L + TV+ + H+ L + D ILV++DG+I G +++
Sbjct: 513 AAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560
|
Length = 580 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 28/231 (12%)
Query: 1250 DLQVRYAPQ--MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID 1307
+L V + L +S + GE G+VG +GSGKSTL + + +++P +G I+ D
Sbjct: 6 NLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFD 65
Query: 1308 GIDISLIGLHDL---RSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEAL-DKCQLGD 1363
G D+ + R + ++ QDP S+L+P + EQI E L +L
Sbjct: 66 GKDLLKLSRRLRKIRRKEIQMVFQDP-------MSSLNPR-MTIGEQIAEPLRIHGKLSK 117
Query: 1364 EVRKKEGKLDSKVT-ENGENW--------SMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
+ +KE L V E S GQRQ V + R L K+L+ DE T+++D
Sbjct: 118 KEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177
Query: 1415 TATDNLIQQTLR--QHFSDCTVLTIAHRITSVID--SDLVLLLNHGLIEEF 1461
+ I L+ Q T+L I H + V+ +D V ++ G I E
Sbjct: 178 VSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 4e-25
Identities = 65/198 (32%), Positives = 92/198 (46%), Gaps = 42/198 (21%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
L D++L + G V + G G+GKS+LL + G + SG + L G +A
Sbjct: 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD--LASLS----- 67
Query: 696 KIEDNILFGKEMNRER-YNAVLDACSLKKDLEILSFGDQTVIGERGIN-LSGGQKQRIQI 753
KE+ R+ Y V A L L + D R N LSGG++QR+ +
Sbjct: 68 --------PKELARKIAY--VPQALEL---LGLAHLAD------RPFNELSGGERQRVLL 108
Query: 754 ARALYQDSDIYLFDDPFSAVD-AHTGSHLFQEVLLGLLSS------KTVIYVTHQVEF-L 805
ARAL Q+ I L D+P S +D AH Q LL LL KTV+ V H +
Sbjct: 109 ARALAQEPPILLLDEPTSHLDIAH------QIELLELLRRLARERGKTVVMVLHDLNLAA 162
Query: 806 PAADLILVMKDGKITQAG 823
AD ++++KDG+I G
Sbjct: 163 RYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 5e-25
Identities = 67/223 (30%), Positives = 101/223 (45%), Gaps = 38/223 (17%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
LKD++L++ G RV + G GSGKS+LL + G + SG + + G +S
Sbjct: 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLEL 77
Query: 694 SGKI----------------EDNILFG--------KEMNRERYNAVLDACSLKKDLEILS 729
K+ ED + FG +E+ ER L+ L++ L+
Sbjct: 78 RQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEI-EERVAEALELVGLEELLDRPP 136
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-LG 788
F NLSGGQKQR+ IA L +I L D+P + +D L + + L
Sbjct: 137 F-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLK 185
Query: 789 LLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830
KT+I VTH +E + AD ++V+ DGKI G ++ N
Sbjct: 186 EEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-24
Identities = 116/457 (25%), Positives = 196/457 (42%), Gaps = 71/457 (15%)
Query: 434 LILYKNLGIASLAALFGTVIVM-----------LVNIPL--------GRVQENFQDKLMK 474
L L N+ + +L L G + M L+N+PL G+ + ++L +
Sbjct: 275 LSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQE 334
Query: 475 SKDERMKATSEILRNMRILKLQGWE-------MKFLSKIINLRKRETGWLKKYVYTSAIS 527
+ + + E L MR ++ E + L + + L KR+ Y++T+++
Sbjct: 335 AVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVL 394
Query: 528 SFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVP----IYNLPDVISMII 583
G V V +G ++L + SG ++S F L Q + L V S ++
Sbjct: 395 -----GMLIQVLVLYYGGQLVLTGKVSSGNLVS----FLLYQEQLGEAVRVLSYVYSGMM 445
Query: 584 QTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGN-------FSWDISSHNPTL 636
Q + +++ F D +P++ +G A ++G FS+ P L
Sbjct: 446 QAVGASEKV---FEYLDRKPNI---PLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVL 497
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------- 683
K + + G VA+ G GSGKS++ + + G + L G
Sbjct: 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQV 557
Query: 684 AYVAQSPWIQSGKIEDNILFG-KEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGIN 742
A V Q P + SG + +NI +G + E A A + + G T +GE+G
Sbjct: 558 ALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ 617
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQV 802
LSGGQKQRI IARAL + + + D+ SA+DA L QE +S+TV+ + H++
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAEC-EQLLQE--SRSRASRTVLLIAHRL 674
Query: 803 EFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELV 839
+ AD ILV+K G + + G + L+ + LV
Sbjct: 675 STVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 69/224 (30%), Positives = 104/224 (46%), Gaps = 36/224 (16%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 683
P L D++ + G + G GSGKS+LL C+ G + SG + L G
Sbjct: 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKEL 74
Query: 684 ----AYVAQSPWIQSG-KIEDNILFGKEMNRERYNAVLDACSLKKDLEI----LSFGDQT 734
AYV QSP G + + +L G R + + S K+D EI L
Sbjct: 75 AKKLAYVPQSPSAPFGLTVYELVLLG----RYPHLGLFGRPS-KEDEEIVEEALELLGLE 129
Query: 735 VIGERGIN-LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS- 792
+ +R ++ LSGG++QR+ IARAL Q++ I L D+P S +D Q +L LL
Sbjct: 130 HLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH-----QIEVLELLRDL 184
Query: 793 -----KTVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDLIN 830
TV+ V H + AD ++++KDGKI G +++
Sbjct: 185 NREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228
|
Length = 258 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 1e-24
Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 23/208 (11%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA-------- 684
+ DI+L + G V + G G GK++LL I G SG + L G
Sbjct: 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR 77
Query: 685 ---YVAQSPWIQSGK-IEDNILFGKEMNRERYNAVLD--ACSLKKDLEILSFGDQTVIGE 738
V QS + +E+N+ FG ++ ++ A + + + + F D+
Sbjct: 78 PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADR----- 132
Query: 739 RGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS--KTVI 796
+ LSGGQ+QR+ +ARAL + + L D+P SA+DA + ++ L L T +
Sbjct: 133 KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQM-RKELKELQRELGITFV 191
Query: 797 YVTH-QVEFLPAADLILVMKDGKITQAG 823
YVTH Q E L +D I VM DG+I Q G
Sbjct: 192 YVTHDQEEALAMSDRIAVMNDGRIEQVG 219
|
Length = 352 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-24
Identities = 70/249 (28%), Positives = 122/249 (48%), Gaps = 25/249 (10%)
Query: 600 DLQPDLV--EKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGS 657
+ +P++ + + + +L + + +F++ P LK ++L++ G +VA+ G G
Sbjct: 319 EQKPEVTFPTTSTAAADQVSLTLNNVSFTYP-DQPQPVLKGLSLQIKAGEKVALLGRTGC 377
Query: 658 GKSSLLSCILGEVPKISGTLKLCGT--KAY-----------VAQSPWIQSGKIEDNILFG 704
GKS+LL + G + L G Y V+Q + S + DN+L
Sbjct: 378 GKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLA 437
Query: 705 K-EMNRERYNAVLDACSLKKDLEILSFGDQ---TVIGERGINLSGGQKQRIQIARALYQD 760
+ E VL L+K LE D+ +GE G LSGG+++R+ IARAL D
Sbjct: 438 APNASDEALIEVLQQVGLEKLLE----DDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493
Query: 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKIT 820
+ + L D+P +DA T + + +L +KTV+ +TH++ L D I VM +G+I
Sbjct: 494 APLLLLDEPTEGLDAETERQILE-LLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQII 552
Query: 821 QAGKYNDLI 829
+ G + +L+
Sbjct: 553 EQGTHQELL 561
|
Length = 574 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-24
Identities = 65/240 (27%), Positives = 108/240 (45%), Gaps = 10/240 (4%)
Query: 1224 PSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTG 1283
+P + + E G + + ++ + L+GIS + GE I+G +G
Sbjct: 303 SRDPAMPLPEPE--------GHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSG 354
Query: 1284 SGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDP 1343
SGKSTL + + I P +G + +DG D+ + +PQD +F GTV N+
Sbjct: 355 SGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIAR 414
Query: 1344 LEESTD-EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402
E+ D E+I EA + + + + D+ + G S GQRQ + L R L K
Sbjct: 415 FGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK 474
Query: 1403 ILMLDEATASVDTATDN-LIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEF 1461
+++LDE +++D + L TV+ I HR + + D +L+L G I F
Sbjct: 475 LVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 3e-24
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 24/224 (10%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTL-------------- 677
L D++L++ G VA+ G GSGKS+LL +LG E P+ SG++
Sbjct: 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE-SGSVFYDGQDLAGLDVQA 524
Query: 678 --KLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
+ G V Q+ + SG I +NI G + + L +D+ + G TV
Sbjct: 525 VRRQLGV---VLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTV 581
Query: 736 IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTV 795
I E G LSGGQ+QR+ IARAL + I LFD+ SA+D T + + E L L ++ V
Sbjct: 582 ISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIV-SESLERLKVTRIV 640
Query: 796 IYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELV 839
I H++ + AD I V+ G++ Q G Y++L+ F +L
Sbjct: 641 I--AHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLA 682
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 3e-24
Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 8/225 (3%)
Query: 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1302
G + + L Q +L+GIS GE GI+G +GSGKSTL + L I P +G
Sbjct: 332 QGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG 391
Query: 1303 QILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQL 1361
+ +DG D+ L + +PQD +F+GT+ N+ EE+ E++ EA +
Sbjct: 392 SVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGV 451
Query: 1362 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT----AT 1417
+ + + D+++ E G S GQRQ + L R L +++LDE +++D+ A
Sbjct: 452 HELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAAL 511
Query: 1418 DNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFD 1462
I + TV+ IAHR +++ D +L+L G I F
Sbjct: 512 AAAILAAKAR---GGTVVVIAHRPSALASVDKILVLQDGRIAAFG 553
|
Length = 580 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 6e-24
Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 36/246 (14%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------- 683
+ P L+DI+L V G A+ G G+GKS+LL ILG + SG +K+ G
Sbjct: 16 NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRL 75
Query: 684 --AYVAQSPWIQSG---KIED--------NILFGKEMNRERYNAVLDACSLKKDLEILSF 730
YV Q + ++D + + +N++ V +A L++ + +
Sbjct: 76 RIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEA--LER-VGMEDL 132
Query: 731 GDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL 790
D+ IGE LSGGQKQR+ +ARAL Q+ D+ L D+PF+ VD ++ LL L
Sbjct: 133 RDRQ-IGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD--LLKEL 185
Query: 791 SS--KTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQALL 847
KTV+ VTH + + A D ++ + + +G +++ + + G L
Sbjct: 186 RQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLTE-ENLEKAFGGSLAHAL 243
Query: 848 ALGSIE 853
A
Sbjct: 244 AGYRHH 249
|
Length = 254 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 99.8 bits (250), Expect = 8e-24
Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 46/212 (21%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309
+L V Y + VL +S + GE GI+G G+GKSTL++TL +++P++G+IL+DG
Sbjct: 4 NLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61
Query: 1310 DISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKE 1369
D++ + +L +++ +PQ AL+ L
Sbjct: 62 DLASLSPKELARKIAYVPQ--------------------------ALELLGLAH------ 89
Query: 1370 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD----TATDNLIQQTL 1425
D E S G+RQ V L R L + IL+LDE T+ +D L+++
Sbjct: 90 -LADRPFNE----LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA 144
Query: 1426 RQHFSDCTVLTIAHRITSVID-SDLVLLLNHG 1456
R+ TV+ + H + +D V+LL G
Sbjct: 145 RER--GKTVVMVLHDLNLAARYADRVILLKDG 174
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 1e-23
Identities = 63/198 (31%), Positives = 92/198 (46%), Gaps = 27/198 (13%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK 683
N S L D++L + G VA+ G GSGKS+LL CI G SG++ + G
Sbjct: 5 NVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGED 63
Query: 684 AYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINL 743
+ + E R R V +L F TV+ + L
Sbjct: 64 --------LTDLEDEL------PPLRRRIGMVFQDFAL--------FPHLTVLENIALGL 101
Query: 744 SGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL--LSSKTVIYVTHQ 801
SGGQ+QR+ +ARAL D D+ L D+P SA+D T + + +L L TV+ VTH
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV-RALLKSLQAQLGITVVLVTHD 160
Query: 802 VEFLPA-ADLILVMKDGK 818
++ AD ++V++DGK
Sbjct: 161 LDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-23
Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 37/221 (16%)
Query: 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI---GL 1316
L +S P GE GI+G +G+GKSTL++ + + P +G + +DG D++ + L
Sbjct: 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAEL 78
Query: 1317 HDLRSRLSIIPQDPVMFEG-TVRSNLD-PLE------ESTDEQIWEALDKCQLGDEVRKK 1368
LR ++ +I Q + TV N+ PLE +++ E L+ L D+ +
Sbjct: 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRY 138
Query: 1369 EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN-------LI 1421
+L S GQ+Q V + R L KIL+ DEAT+++D T I
Sbjct: 139 PAQL-----------SGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDI 187
Query: 1422 QQTLRQHFSDCTVLTIAHRITSVIDS--DLVLLLNHGLIEE 1460
+ L T++ I H + V+ D V +L+ G + E
Sbjct: 188 NREL-----GLTIVLITHEM-EVVKRICDRVAVLDQGRLVE 222
|
Length = 339 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 3e-23
Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 32/217 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 684
LK+++L+V G + G GSGKS LL I G + SG + L G +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74
Query: 685 YVAQS----PWIQSGKIEDNILFG----KEMNRERYNAVLDACSLKKDLEILSFGDQTVI 736
YV Q+ P + + NI +G K +E VL+ + + L I ++
Sbjct: 75 YVPQNYALFPHMT---VYKNIAYGLKKRKVDKKEIERKVLE---IAEMLGI-----DHLL 123
Query: 737 GERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV-LLGLLSSKTV 795
+ LSGG++QR+ IARAL + I L D+PFSA+D T L +E+ + TV
Sbjct: 124 NRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV 183
Query: 796 IYVTH-QVEFLPAADLILVMKDGKITQAGKYNDLINS 831
++VTH E AD + +M +GK+ Q GK ++
Sbjct: 184 LHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 4e-23
Identities = 64/275 (23%), Positives = 104/275 (37%), Gaps = 53/275 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L ++ +V G + G G+GK++LL + G + SG + + G
Sbjct: 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80
Query: 684 AYVAQS----PWIQSGKIEDNILF-------GKEMNRERYNAVLDACSLKKDLEILSFGD 732
YV Q P + + +N+ F KE ER +L+ L+
Sbjct: 81 GYVPQEPSLYPEL---TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA------- 130
Query: 733 QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS 792
++ LSGG KQR+ IA AL D ++ + D+P S +D + E+L L
Sbjct: 131 ----NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES-RREIWELLRELAKE 185
Query: 793 --KTVIYVTHQ---VEFLPAADLILVMKDGKITQAGKYNDLINS--GTDFMELVGAHEQA 845
T++ TH E L D ++++ DGKI G +L G +EL +
Sbjct: 186 GGVTILLSTHILEEAEEL--CDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLEL 243
Query: 846 LLAL------GSIEGRPASERASGENGGTVIANRI 874
L E A E G + + +
Sbjct: 244 AELLEGLKLVKGEEELAEILEALLEEGVKIESIEV 278
|
Length = 293 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 4e-23
Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 14/129 (10%)
Query: 1287 STLIQTLFRIVEPAAGQILIDGIDI-SLIGLHDLRSRLSIIPQDP-VMFEGTVRSNLDP- 1343
STL++ + +++P +G IL+DG D L LR R+ ++ QDP + E TVR NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1344 -LEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402
++ D + EAL++ L D + ++ S GQ+Q V + R LLK+ K
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 1403 ILMLDEATA 1411
+L+LDE TA
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 5e-23
Identities = 66/215 (30%), Positives = 96/215 (44%), Gaps = 43/215 (20%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKA-------- 684
LK ++L + G VA+ G GSGKS+LL+ + G + P SG +++ GT
Sbjct: 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT-SGEVRVDGTDISKLSEKEL 76
Query: 685 ---------YVAQSP-WIQSGKIEDNILFG-------KEMNRERYNAVLDACSLKKDLEI 727
+V QS + +N+ K+ RER +L+ L L
Sbjct: 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN- 135
Query: 728 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGS---HLFQE 784
LSGGQ+QR+ IARAL D I L D+P +D+ TG L +E
Sbjct: 136 ----------HYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRE 185
Query: 785 VLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKI 819
L + T++ VTH E AD I+ ++DGKI
Sbjct: 186 --LNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 5e-23
Identities = 57/158 (36%), Positives = 100/158 (63%), Gaps = 3/158 (1%)
Query: 1301 AGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD-PLEESTDEQIWEALDKC 1359
+G+IL+DG+DI L DLR+ SI+ Q+P++F ++ N+ E++T E + A
Sbjct: 1276 SGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFA 1335
Query: 1360 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN 1419
+ + + K D+ V G++ S GQ+Q + + R LL+ KIL+LDEAT+S+D+ ++
Sbjct: 1336 AIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEK 1395
Query: 1420 LIQQTLR--QHFSDCTVLTIAHRITSVIDSDLVLLLNH 1455
LI++T+ + +D T++TIAHRI S+ SD +++ N+
Sbjct: 1396 LIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNN 1433
|
Length = 1466 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 8e-23
Identities = 49/274 (17%), Positives = 99/274 (36%), Gaps = 4/274 (1%)
Query: 303 VLVTGFLTVLYTLASYVGPYLIDTFVQYLNGR-RDFENEGYVLVSAFCVAKLVECLCQRF 361
+L+ L +L + V P L+ F+ L D + L +++ L +
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 362 RVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHD 421
+ ++LG R+R L + + L L S GE+ + +T D ++ D
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 422 PWLVLFEVALSILILYKNLG-IASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERM 480
+ + I+ G +L L +++L++ L + K K+ +
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAG 180
Query: 481 KATSEILRNMRILKLQGWEMKFLSKI-INLRKRETGWLKKYVYTSAISSFVFWGAPT-FV 538
E L +R +K G E L + L E +KK + + +
Sbjct: 181 SVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYA 240
Query: 539 SVATFGTCILLNVPLESGKMLSAIATFRLLQVPI 572
FG ++++ L G + + ++ L P+
Sbjct: 241 LALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 9e-23
Identities = 77/279 (27%), Positives = 125/279 (44%), Gaps = 37/279 (13%)
Query: 584 QTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDG-------NFSWDISSHNPTL 636
QT ++L+R+ L+ +P + AL + G F + S L
Sbjct: 423 QTGIALERLGDI--LNS------PTEPRSAGLAALPELRGAITFENIRFRYAPDS-PEVL 473
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCI-------LGEV------PKISGTLKLCGTK 683
++NL + G + + G GSGKS+L + G+V I+ L
Sbjct: 474 SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533
Query: 684 AYVAQSPWIQSGKIEDNILFGK-EMNRERYNAVLDACSLKKDLEILS---FGDQTVIGER 739
V Q + S I DNI E V+ A L + +S G T +GE+
Sbjct: 534 GVVLQENVLFSRSIRDNIALCNPGAPFEH---VIHAAKLAGAHDFISELPQGYNTEVGEK 590
Query: 740 GINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVT 799
G NLSGGQ+QRI IARAL + I +FD+ SA+D + L + + +TVI +
Sbjct: 591 GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES-EALIMRNMREICRGRTVIIIA 649
Query: 800 HQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMEL 838
H++ + A D I+V++ G+I ++G++ +L+ + L
Sbjct: 650 HRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 9e-23
Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 15/209 (7%)
Query: 625 FSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK- 683
F++ L+D++ + G A+ G GSGKS++++ + G + L G
Sbjct: 19 FAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPI 78
Query: 684 ------------AYVAQSPWIQSGKIEDNILFG-KEMNRERYNAVLDACSLKKDLEILSF 730
+ V Q P + + ++DNI +G + + E + L+
Sbjct: 79 SQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELAS 138
Query: 731 GDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL 790
G T +GE+G LSGGQKQR+ IARAL ++ + + D+ SA+DA + Q+ L
Sbjct: 139 GYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES-EQQVQQALYDWP 197
Query: 791 SSKTVIYVTHQVEFLPAADLILVMKDGKI 819
+TV+ + H++ + AD ILV+ G+I
Sbjct: 198 ERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 1e-22
Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 26/221 (11%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
+ L +L RY + L G+S T G G++G G+GK+TL++ L + P++G I
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLDPL-------EESTDEQIWEALD 1357
IDG D+ L LR R+ +PQ+ ++ TVR LD + + ++ E L+
Sbjct: 58 IDGQDV-LKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE 116
Query: 1358 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT 1417
LGD +KK G L S G R+ V + + L+ IL++DE TA +D
Sbjct: 117 LVNLGDRAKKKIGSL-----------SGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 1418 DNLIQQTLRQHFSDCTVLTIAHRITSVIDS--DLVLLLNHG 1456
+ L + D V+ H I ++S + V +LN G
Sbjct: 166 RIRFRNLLSELGEDRIVILSTH-IVEDVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 1e-22
Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 40/262 (15%)
Query: 1250 DLQVRYA--PQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID 1307
+L + Y L +S GE GIVG +GSGKSTL + L + +P++G IL+D
Sbjct: 8 NLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLD 67
Query: 1308 GIDISLIGLHDLRSR-LSIIPQDPVMFEGTV-------RSNLDPL----EESTDEQIWEA 1355
G ++ R + ++ QDP ++ R +PL + ++I E
Sbjct: 68 GKPLAPKKRAKAFYRPVQMVFQDP---YSSLNPRRTVGRILSEPLRPHGLSKSQQRIAEL 124
Query: 1356 LDKCQLGDEV-RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
LD+ L ++ +L S GQRQ + + R L+ K+L+LDE T+++D
Sbjct: 125 LDQVGLPPSFLDRRPHEL-----------SGGQRQRIAIARALIPEPKLLILDEPTSALD 173
Query: 1415 TATDNLIQ---QTLRQHFSDCTVLTIAHRITSVID--SDLVLLLNHGLIEEFDNPANLLE 1469
+ I L++ T L I+H + ++++ D + ++++G I E LL
Sbjct: 174 VSVQAQILNLLLELKKER-GLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPTEELLS 231
Query: 1470 NKSSSFSQLVAEYTLRSSSSFE 1491
+ S +++ + L + S +
Sbjct: 232 HPSHPYTREL----LEAVPSID 249
|
Length = 252 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 1e-22
Identities = 67/236 (28%), Positives = 110/236 (46%), Gaps = 32/236 (13%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
I+L L + + VL+G+ GE I+G +GSGKSTL++ + ++ P +G++L
Sbjct: 1 IELRGLTKSFGGRT--VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 1306 IDGIDI---SLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLD-PLEEST-------DEQIW 1353
IDG DI S L+ LR R+ ++ Q +F+ TV N+ PL E T E +
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL 118
Query: 1354 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASV 1413
E L+ L +L S G ++ V L R L ++L+ DE TA +
Sbjct: 119 EKLEAVGLRGAEDLYPAEL-----------SGGMKKRVALARALALDPELLLYDEPTAGL 167
Query: 1414 D----TATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNP 1464
D D+LI ++L++ T + + H + + +D + +L G I P
Sbjct: 168 DPIASGVIDDLI-RSLKKEL-GLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTP 221
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 2e-22
Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 46/217 (21%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
++L ++ RY + VL +S GE ++G +GSGKSTL++ + + EP +G IL
Sbjct: 1 LELKNVSKRYGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1306 IDGIDISLIGLH--DLRSRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLG 1362
IDG D++ + LR R+ ++ QD +F TV N I L
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLEN-----------IALGL------ 101
Query: 1363 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ 1422
S GQ+Q V L R L +L+LDE T+++D T ++
Sbjct: 102 ---------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 1423 QTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHG 1456
L+ TV+ + H + +D V++L G
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 2e-22
Identities = 64/217 (29%), Positives = 102/217 (47%), Gaps = 43/217 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
LKD++L + G VA+ G G+GKS+LL C+ G V SG++ + GT
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 684 ----AYVAQSPWIQSGKIE-----DNILFGKEMNRERYNAVL---------DACSLKKDL 725
+ Q + IE +N+L G+ R + ++ A + + +
Sbjct: 77 RRQIGMIFQQFNL----IERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV 132
Query: 726 EILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV 785
+L Q R LSGGQ+QR+ IARAL Q + L D+P +++D + S ++
Sbjct: 133 GLLDKAYQ-----RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPAS-SRQVMDL 186
Query: 786 LLGLLSSK--TVIYVTHQVEF-LPAADLILVMKDGKI 819
L + + TVI HQV+ AD I+ +KDG+I
Sbjct: 187 LKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 3e-22
Identities = 55/275 (20%), Positives = 102/275 (37%), Gaps = 9/275 (3%)
Query: 924 GALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVL 983
L L L ++ G D + +L I+ +A+ V +
Sbjct: 8 LILAGATALVFPLL------LGRFLDSLIDGNGD--ERSSLISLAILLIAVGVLQGLLLQ 59
Query: 984 ARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLV 1043
L G + LF + I PMSFFD G + +R + D S G+ +
Sbjct: 60 GSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKL 119
Query: 1044 GAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPV 1103
G + S+ ++G VM W++ +V + + I R+L+R A
Sbjct: 120 GLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKA 179
Query: 1104 IQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITF 1163
E++SG T+++F +E +R K +++ + A ++S +++
Sbjct: 180 GSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSY 239
Query: 1164 AFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLL 1197
A L F + G + ++ GL L+ L
Sbjct: 240 ALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 3e-22
Identities = 56/216 (25%), Positives = 97/216 (44%), Gaps = 46/216 (21%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
I++ +L RY + L IS T GE G++G G+GK+TLI+ + +++P +G+I
Sbjct: 1 IEVRNLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDE 1364
+ G DI +++ R+ +P++P ++E TVR NL
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 1365 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424
S G +Q + L + LL ++L+LDE T+ +D + +
Sbjct: 96 ------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 1425 LRQH-FSDCTVLTIAHRITSVID-SDLVLLLNHGLI 1458
LR+ T+L +H + D V +LN+G I
Sbjct: 138 LRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-22
Identities = 80/303 (26%), Positives = 126/303 (41%), Gaps = 51/303 (16%)
Query: 1213 SVERIFQ-----YT-----CIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPL- 1261
E I YT +P I + + + +L RY + L
Sbjct: 238 PTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLF 297
Query: 1262 --------VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL 1313
+ +S GE G+VG +GSGKSTL + L ++ P++G I+ DG D+ L
Sbjct: 298 VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357
Query: 1314 IG--LHDLRSRLSIIPQDPVMF---EGTVRSNL-DPLEES-------TDEQIWEALDKCQ 1360
G L LR R+ ++ QDP TV L +PL ++ E L+
Sbjct: 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVG 417
Query: 1361 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD-- 1418
L E LD E S GQRQ V + R L K+L+LDE +++D +
Sbjct: 418 LPPEF------LDRYPHE----LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQ 467
Query: 1419 --NLIQQTLRQHFSDCTVLTIAHRITSVID--SDLVLLLNHGLIEEFDNPANLLENKSSS 1474
NL++ L++ T L I+H + +V+ +D V ++ G I E + EN
Sbjct: 468 VLNLLKD-LQEEL-GLTYLFISHDL-AVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHP 524
Query: 1475 FSQ 1477
+++
Sbjct: 525 YTR 527
|
Length = 539 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 5e-22
Identities = 48/204 (23%), Positives = 97/204 (47%), Gaps = 21/204 (10%)
Query: 1258 QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH 1317
+ L+ I+ P GE IVG GSGKS+L+ L +E +G + + G
Sbjct: 16 ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--------- 66
Query: 1318 DLRSRLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDS 1374
++ + Q+P + GT+R N+ P +E E+ + + C L ++ +
Sbjct: 67 ----SIAYVSQEPWIQNGTIRENILFGKPFDE---ERYEKVIKACALEPDLEILPDGDLT 119
Query: 1375 KVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT-DNLIQQTLRQHFSDC- 1432
++ E G N S GQ+Q + L R + + I +LD+ ++VD ++ + + +
Sbjct: 120 EIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNK 179
Query: 1433 TVLTIAHRITSVIDSDLVLLLNHG 1456
T + + H++ + +D +++L++G
Sbjct: 180 TRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 5e-22
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 31/196 (15%)
Query: 1251 LQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGID 1310
L Y P L+ +S + GE ++G +G+GKSTL++ L +VEP +G +LIDG D
Sbjct: 6 LSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTD 64
Query: 1311 I-SLIG--LHDLRSRLSIIPQDP-------VM---------FEGTVRSNLDPLEESTDEQ 1351
I L G L LR ++ +I Q V+ T RS + ++
Sbjct: 65 INKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQR 124
Query: 1352 IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATA 1411
AL++ L D+ ++ +L S GQ+Q V + R L+++ K+++ DE A
Sbjct: 125 ALAALERVGLLDKAYQRADQL-----------SGGQQQRVAIARALMQQPKLILADEPVA 173
Query: 1412 SVDTATDNLIQQTLRQ 1427
S+D A+ + L++
Sbjct: 174 SLDPASSRQVMDLLKR 189
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 6e-22
Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 28/206 (13%)
Query: 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
L I + +FS+ LK+++L++ G ++A+ G GSGKS+LL + G++ G +
Sbjct: 1 LSINNVSFSYP-EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 678 KLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIG 737
L G + +VL+ F D T+
Sbjct: 60 TLDGVPVSDLEK------------------ALSSLISVLNQ-------RPYLF-DTTLRN 93
Query: 738 ERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIY 797
G SGG++QR+ +AR L QD+ I L D+P +D T L ++ +L KT+I+
Sbjct: 94 NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SLIFEVLKDKTLIW 152
Query: 798 VTHQVEFLPAADLILVMKDGKITQAG 823
+TH + + D IL +++GKI G
Sbjct: 153 ITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 8e-22
Identities = 56/201 (27%), Positives = 87/201 (43%), Gaps = 56/201 (27%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 683
P L++++ + G +A+ G GSGKS+L ILG + SG ++L G
Sbjct: 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNEL 74
Query: 684 ----AYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGER 739
Y+ Q + SG I +NIL
Sbjct: 75 GDHVGYLPQDDELFSGSIAENIL------------------------------------- 97
Query: 740 GINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYV 798
SGGQ+QR+ +ARALY + I + D+P S +D G + + L + T I +
Sbjct: 98 ----SGGQRQRLGLARALYGNPRILVLDEPNSHLD-VEGERALNQAIAALKAAGATRIVI 152
Query: 799 THQVEFLPAADLILVMKDGKI 819
H+ E L +AD ILV++DG++
Sbjct: 153 AHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 8e-22
Identities = 75/240 (31%), Positives = 113/240 (47%), Gaps = 42/240 (17%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 683
+ ++NL++ G + + G GSGK++ + I + SG + + G
Sbjct: 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELR 74
Query: 684 ---AYVAQSPWIQSG-----KIEDNI-----LFG--KEMNRERYNAVLDACSLKKDLEIL 728
YV Q Q G +E+NI L KE RER + +L L+
Sbjct: 75 RKIGYVIQ----QIGLFPHMTVEENIALVPKLLKWPKEKIRER---ADELLALV-GLDPA 126
Query: 729 SFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-L 787
F D+ E LSGGQ+QR+ +ARAL D + L D+PF A+D T L +E L
Sbjct: 127 EFADRYP-HE----LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRL 181
Query: 788 GLLSSKTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDLINS-GTDFM-ELVGAHEQ 844
KT+++VTH + E AD I +MK+G+I Q G ++++ S DF+ E VGA
Sbjct: 182 QQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAEFVGADRL 241
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 9e-22
Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 26/228 (11%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
++L L Y L +S T GE ++G +G GK+TL++ + + P +G+IL
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLD-PL------EESTDEQIWEALD 1357
IDG D++ + R + ++ QD +F TV N+ L + ++ E L+
Sbjct: 59 IDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLE 116
Query: 1358 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT 1417
L + + +L S GQ+Q V L R L + +L+LDE +++D
Sbjct: 117 LVGLEGLLNRYPHEL-----------SGGQQQRVALARALAREPSLLLLDEPLSALDAKL 165
Query: 1418 DNLIQQTLR--QHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFD 1462
+++ L+ Q T + + H + +D + ++N G I +
Sbjct: 166 REELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 9e-22
Identities = 77/226 (34%), Positives = 111/226 (49%), Gaps = 28/226 (12%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----------- 684
L D+NL+V G VA+ G GSGKS+LL I G SG ++L G A
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 685 YVAQS-PWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDL-EILSFGDQTVIGERGIN 742
+V Q + + DNI FG E+ + +K + E+L +G+R N
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKH------PKAKIKARVEELLELVQLEGLGDRYPN 129
Query: 743 -LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK---TVIYV 798
LSGGQ+QR+ +ARAL + + L D+PF A+DA L L L + T ++V
Sbjct: 130 QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL--RSWLRKLHDEVHVTTVFV 187
Query: 799 TH-QVEFLPAADLILVMKDGKITQAGKYNDLI-NSGTDF-MELVGA 841
TH Q E + AD I+VM +GKI Q G +++ + F M +G
Sbjct: 188 THDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFLGE 233
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 1e-21
Identities = 66/210 (31%), Positives = 104/210 (49%), Gaps = 25/210 (11%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQSPWI 692
L DI+L + G VA+ G G+GKS+LL I G E P +G ++L G + + +
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD-AGRIRLNGRVLFDVSNLAV 74
Query: 693 QSGKI---------------EDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIG 737
+ K+ DNI FG ++ +ER + +++ L ++ +
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG---LA 131
Query: 738 ERGIN-LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK--T 794
+R LSGGQ+QR+ +ARAL + + L D+PF A+DA L + L L T
Sbjct: 132 DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL-RRWLRKLHDRLGVT 190
Query: 795 VIYVTH-QVEFLPAADLILVMKDGKITQAG 823
++VTH Q E L AD ++V+ G+I Q G
Sbjct: 191 TVFVTHDQEEALELADRVVVLNQGRIEQVG 220
|
Length = 345 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-21
Identities = 68/214 (31%), Positives = 109/214 (50%), Gaps = 18/214 (8%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 683
P L++IN K+ G VA+ G GSGKS++ + + G + L G
Sbjct: 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASL 415
Query: 684 ----AYVAQSPWIQSGKIEDNILFGKEMNRERY---NAVLDACSLKKDLEILSFGDQTVI 736
A V+Q+ + + I +NI + + R A A ++ + + G TVI
Sbjct: 416 RNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDF-INKMDNGLDTVI 474
Query: 737 GERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVI 796
GE G+ LSGGQ+QRI IARAL +DS I + D+ SA+D + Q L L ++T +
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTSL 533
Query: 797 YVTHQVEFLPAADLILVMKDGKITQAGKYNDLIN 830
+ H++ + AD ILV++DG+I + G + +L+
Sbjct: 534 VIAHRLSTIEKADEILVVEDGEIVERGTHAELLA 567
|
Length = 582 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 2e-21
Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 34/213 (15%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTK--------- 683
LKD+NL++ G VA+ G GSGKS+LL+ + G + P SG + + G
Sbjct: 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-SGEVLINGKDLTKLSEKEL 77
Query: 684 --------AYVAQS-PWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQT 734
+V Q+ + + +N+ + + A ++ LE+L D+
Sbjct: 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA--AEELLEVLGLEDRL 135
Query: 735 VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS-- 792
+ ++ LSGGQ+QR+ IARAL + I L D+P +D+ T + +L LL
Sbjct: 136 -LKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA-----KEVLELLRELN 189
Query: 793 ----KTVIYVTHQVEFLPAADLILVMKDGKITQ 821
KT+I VTH E AD ++ +KDGKI +
Sbjct: 190 KERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 2e-21
Identities = 67/201 (33%), Positives = 102/201 (50%), Gaps = 34/201 (16%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAY 685
P L+DINL + G + V G G GK++LL+ I G VP G++ L G +
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGV 74
Query: 686 VAQS----PWIQSGKIEDNILFGKE---MNRERYNAVLDACSLKKDLEILSFGDQTVIGE 738
V Q+ PW ++DN+ FG + + + + + K LE +
Sbjct: 75 VFQNEGLLPWRN---VQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE--------GAEK 123
Query: 739 RGI-NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL--SSKTV 795
R I LSGGQ+QR+ IARAL + + L D+PF A+DA T + Q +LL L + K V
Sbjct: 124 RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM-QTLLLKLWQETGKQV 182
Query: 796 IYVTHQVE---FLPAADLILV 813
+ +TH +E F+ A +L+L+
Sbjct: 183 LLITHDIEEAVFM-ATELVLL 202
|
Length = 255 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 2e-21
Identities = 66/239 (27%), Positives = 119/239 (49%), Gaps = 31/239 (12%)
Query: 614 SETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 673
+ + + +FS+ +S N LK+++ ++ G VA+ G GSGKS++ + G +
Sbjct: 4 KSVMIKVENVSFSYP-NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ 62
Query: 674 SGTLKLCGTK-------------AYVAQSPWIQ--SGKIEDNILFG---KEMNRERYNAV 715
SG +K+ G + Q+P Q +ED+I FG K++ ++ +
Sbjct: 63 SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDI 122
Query: 716 LDACSLKKDLE-ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVD 774
+D + K +E L Q NLSGGQKQR+ IA L + +I +FD+ S +D
Sbjct: 123 IDDLAKKVGMEDYLDKEPQ--------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
Query: 775 AHTGSHLFQEVLLGL--LSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINS 831
G +++++ L KT+I +TH ++ AD ++V +GK+ GK +++N+
Sbjct: 175 PK-GKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232
|
Length = 271 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 91.7 bits (229), Expect = 4e-21
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 30/186 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
L DI+L V G + G G+GK++L+ ILG + SG +K+ G + +
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG------KDIKKEPE 69
Query: 696 KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 755
++ + R + + SL ++L TV + LSGG KQR+ +A+
Sbjct: 70 EV-----------KRRIGYLPEEPSLYENL--------TV--RENLKLSGGMKQRLALAQ 108
Query: 756 ALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS-KTVIYVTHQVEFLPA-ADLILV 813
AL D ++ + D+P S +D + F E+L L KT++ +H +E D + +
Sbjct: 109 ALLHDPELLILDEPTSGLDPES-RREFWELLRELKKEGKTILLSSHILEEAERLCDRVAI 167
Query: 814 MKDGKI 819
+ +G+I
Sbjct: 168 LNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 4e-21
Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 27/215 (12%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 683
L D++ +V G A+ G G+GK++LLS + GE P SG + L G +
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104
Query: 684 ----AYVAQSPWIQ-----SGKIEDNILFGKEMNRERYNAVLDACSLKKDLEIL-SFGDQ 733
V S + + D +L G + Y L A L +L G +
Sbjct: 105 RKRIGLV--SSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK 162
Query: 734 TVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793
+ +LS G+++R+ IARAL +D ++ + D+P +D L L +S
Sbjct: 163 HLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLI-AREQLLNRLEELAASP 221
Query: 794 ---TVIYVTHQVEFLPA-ADLILVMKDGKITQAGK 824
+++VTH E +P L++K+G++ GK
Sbjct: 222 GAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 5e-21
Identities = 64/245 (26%), Positives = 108/245 (44%), Gaps = 27/245 (11%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 683
+ LKD+NL++ G VA+ G G+GKS+LL + G V SG + G +
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76
Query: 684 -------AYVAQSP-WIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
+ Q + + +N+L G+ + ++ S + + L ++
Sbjct: 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVG 136
Query: 736 IGE----RGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL--LGL 789
I + R LSGGQ+QR+ IARAL Q I L D+P +++D + + ++L +
Sbjct: 137 ILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPES-AKKVMDILKDINQ 195
Query: 790 LSSKTVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQALLA 848
TVI HQV+ AD I+ +K G+I G ++L + E+ G +
Sbjct: 196 EDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL--TDEALDEIYGNEISEDIN 253
Query: 849 LGSIE 853
G
Sbjct: 254 RGVEN 258
|
Length = 258 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 7e-21
Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 26/239 (10%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
I + ++ Y L+ +S GE I+G GSGKST+ + L +++P +G+I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDP-VMFEG-TVRS---------NLDPLEESTDEQIWE 1354
IDGI IS L ++R ++ II Q+P F G TV + P + + I +
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPP--KKMKDIIDD 125
Query: 1355 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
K + ++ KE +N S GQ+Q V + VL +I++ DE+T+ +D
Sbjct: 126 LAKKVGM-EDYLDKE----------PQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
Query: 1415 TATDNLIQQTLR--QHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENK 1471
I++ + + T+++I H + I +D V++ + G + P +L NK
Sbjct: 175 PKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233
|
Length = 271 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 1e-20
Identities = 75/320 (23%), Positives = 152/320 (47%), Gaps = 21/320 (6%)
Query: 536 TFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASF 595
+ + + GT +++ L G++++ I LL + + I+ I + + L+ F
Sbjct: 253 SMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLE---DF 309
Query: 596 FCLDDLQPDLVEKQPSGSSETALDIVD-GNFSWDISSHNPTLKDINLKVFHGMRVAVCGT 654
F L+D E + V+ + +++ ++ + + D++ + G VA+ G
Sbjct: 310 FDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGP 369
Query: 655 VGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNI 701
G+GK++L++ + G + + G A V Q + + I +NI
Sbjct: 370 TGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENI 429
Query: 702 LFGKE--MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQ 759
G+E + E Y A A + + S G T++GERG LSGG++QR+ IARA+ +
Sbjct: 430 RLGREGATDEEVYEAA-KAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK 488
Query: 760 DSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKI 819
++ I + D+ SA+D T + + + + L ++T + H++ + ADL+L + G++
Sbjct: 489 NAPILVLDEATSALDVETEARV-KNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRL 547
Query: 820 TQAGKYNDLINSGTDFMELV 839
+ G + +LI F +L+
Sbjct: 548 IEKGSFQELIQKDGRFYKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 2e-20
Identities = 80/280 (28%), Positives = 132/280 (47%), Gaps = 29/280 (10%)
Query: 568 LQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETAL-----DIVD 622
L P+ L SM+ Q V+ +R+ F L D +Q G+ + L DI +
Sbjct: 294 LNEPLIELTTQQSMLQQAVVAGERV---FELMD-----GPRQQYGNDDRPLQSGRIDIDN 345
Query: 623 GNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 682
+F++ N L++INL V VA+ G GSGKS+L S ++G P G ++L G
Sbjct: 346 VSFAYR--DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGR 403
Query: 683 K-------------AYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILS 729
A V Q P + + N+ G++++ E+ L+ L + L
Sbjct: 404 PLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLP 463
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789
G T +GE+G NLS GQKQ + +AR L Q I + D+ + +D+ T Q+ L +
Sbjct: 464 DGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT-EQAIQQALAAV 522
Query: 790 LSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI 829
T++ + H++ + AD ILV+ G+ + G + L+
Sbjct: 523 REHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL 562
|
Length = 592 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 2e-20
Identities = 68/212 (32%), Positives = 102/212 (48%), Gaps = 36/212 (16%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTK---------- 683
L D+NL + G V + G G GK++ L I G E P SG + + G
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT-SGRIYIGGRDVTDLPPKDRD 73
Query: 684 -AYVAQS----PWIQSGKIEDNILFGKEMNRERYNA----VLDACSLKKDLEILSFGDQT 734
A V Q+ P + + DNI FG ++ + + V + L L+I +
Sbjct: 74 IAMVFQNYALYPHM---TVYDNIAFGLKLRKVPKDEIDERVREVAEL---LQI-----EH 122
Query: 735 VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV--LLGLLSS 792
++ + LSGGQ+QR+ + RA+ ++ ++L D+P S +DA + E+ L L
Sbjct: 123 LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL-G 181
Query: 793 KTVIYVTH-QVEFLPAADLILVMKDGKITQAG 823
T IYVTH QVE + AD I VM DG+I Q G
Sbjct: 182 TTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 3e-20
Identities = 65/222 (29%), Positives = 110/222 (49%), Gaps = 27/222 (12%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK--ISGTLKLCGTKAYVAQSP 690
N L D++L++ G +A+ G G GK++LL I G V ++G + + + +P
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRD--LTHAP 75
Query: 691 WIQSG--------------KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVI 736
+ G K+EDN+ FG + ++ A + L+++ GD
Sbjct: 76 PHKRGLALLFQNYALFPHLKVEDNVAFG--LRAQKMPKADIAERVADALKLVGLGDA--- 130
Query: 737 GER-GINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV--LLGLLSSK 793
LSGG +QRI IARA+ + D+ L D+P SA+DA+ +++ +E+ L L
Sbjct: 131 AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 794 TVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDLINSGTD 834
T++ VTH Q + L AD +MKDG++ G+ L ++ D
Sbjct: 191 TILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPAD 232
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 3e-20
Identities = 67/210 (31%), Positives = 95/210 (45%), Gaps = 38/210 (18%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQSPWIQS 694
LK I+L V G V + G GSGKS+LL CI E P SGT+ + G K + +
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD-SGTIIIDGLKLTDDKKNINEL 74
Query: 695 GK----------------IEDNILFG----KEMNRERYNAVLDACSLKKDLEILSFGDQT 734
+ + +NI K M++ A A L + + + D
Sbjct: 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAE--AEERALELLEKVGLADKADA- 131
Query: 735 VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL---LGLLS 791
LSGGQ+QR+ IARAL + + LFD+P SA+D L EVL L
Sbjct: 132 ----YPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD----PELVGEVLDVMKDLAE 183
Query: 792 SK-TVIYVTHQVEF-LPAADLILVMKDGKI 819
T++ VTH++ F AD ++ M DG+I
Sbjct: 184 EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 3e-20
Identities = 66/227 (29%), Positives = 101/227 (44%), Gaps = 46/227 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
+ D++L V G + G GSGKS+LL CI + SG + + G
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 684 -----AYVAQS----PWIQSGKIEDNILFG-------KEMNRERYNAVLDACSLKKDLEI 727
+ V QS P + +N+ FG + ER L+ L+
Sbjct: 100 RRKKISMVFQSFALLP---HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK 156
Query: 728 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL 787
E LSGG +QR+ +ARAL D DI L D+ FSA+D + Q+ LL
Sbjct: 157 Y-------PDE----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREM-QDELL 204
Query: 788 GLLSS--KTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDLINS 831
L + KT++++TH + E L D I +MKDG++ Q G +++ +
Sbjct: 205 RLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 4e-20
Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 39/213 (18%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------TKAY 685
L+D++L + G V V G G GK++LL+ I G V G+++L G +
Sbjct: 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGV 78
Query: 686 VAQS----PWIQSGKIEDNILFG-------KEMNRERYNAVLDACSLKKDLEILSFGDQT 734
V Q+ PW+ + DN+ FG K RE + +L L+ +
Sbjct: 79 VFQNEALLPWLN---VIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG------AEHKY 129
Query: 735 VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL--LSS 792
+ LSGG +QR+ IARAL + + L D+PF A+DA T + QE+LL L +
Sbjct: 130 IW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM-QELLLDLWQETG 183
Query: 793 KTVIYVTHQV-EFLPAADLILVMK--DGKITQA 822
K V+ +TH + E L A ++V+ G++ +
Sbjct: 184 KQVLLITHDIEEALFLATRLVVLSPGPGRVVER 216
|
Length = 259 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 4e-20
Identities = 67/241 (27%), Positives = 102/241 (42%), Gaps = 67/241 (27%)
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP 690
LK I+L V G V + G GSGKS+LL C+ G
Sbjct: 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE------------------- 53
Query: 691 WIQSGKIE---DNILFGKEMNRER---------YNA-----VLDACSL------------ 721
SG I +++ K++ + R +N VL+ +L
Sbjct: 54 -PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAE 112
Query: 722 --KKDLEILSFGDQTVIGERG----INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA 775
+K LE+L ++ + ++ LSGGQ+QR+ IARAL D + LFD+P SA+D
Sbjct: 113 AREKALELL---EKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALD- 168
Query: 776 HTGSHLFQEVLLGLLSSK----TVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDLIN 830
L EVL + T+I VTH++ F AD ++ M GKI + G + +
Sbjct: 169 ---PELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD 225
Query: 831 S 831
+
Sbjct: 226 N 226
|
Length = 240 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 4e-20
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 46/227 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------- 681
+ D +L V G + G GSGKS+L+ + + G + + G
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 682 ---TKAYVAQS----PWIQSGKIEDNILFGKEMN-------RERYNAVLDACSLKKDLEI 727
+ V QS P + +N+ FG E+ ER L+ L+
Sbjct: 104 RRKKISMVFQSFALLPHRT---VLENVAFGLEVQGVPKAEREERALEALELVGLEG---- 156
Query: 728 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL 787
+ D+ E LSGG +QR+ +ARAL D DI L D+ FSA+D + + Q+ LL
Sbjct: 157 --YADK-YPNE----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM-QDELL 208
Query: 788 GLLSS--KTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDLINS 831
L + KT++++TH + E L D I +MKDG+I Q G +++ +
Sbjct: 209 ELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 4e-20
Identities = 66/234 (28%), Positives = 117/234 (50%), Gaps = 28/234 (11%)
Query: 1255 YAPQMPL---VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI 1311
Y P L ++ GE G++G TGSGKSTLIQ L +++P +G+I+IDG+DI
Sbjct: 12 YMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI 71
Query: 1312 S--LIGLHDLRSRLSIIPQDP--VMFEGTVR-------SNLDPLEESTDEQIWEALDKCQ 1360
+ + L D+R ++ ++ Q P +FE T+ NL EE + ++ A++
Sbjct: 72 TDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVG 131
Query: 1361 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD-TATDN 1419
L E K + + S GQ++ V + V+ KIL+LDE TA +D D
Sbjct: 132 LDYEDYKDKSPFE---------LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDE 182
Query: 1420 LIQQ--TLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470
++ + L + + + T++ ++H + V +D ++++N G E P + +
Sbjct: 183 ILNKIKELHKEY-NMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235
|
Length = 287 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 1e-19
Identities = 69/253 (27%), Positives = 116/253 (45%), Gaps = 25/253 (9%)
Query: 603 PDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSL 662
PD P A V F++D P L I+ + G VA+ G G+GKS++
Sbjct: 250 PDAPPLWPVRLGAVAFINVS--FAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTI 305
Query: 663 LSC-------------ILGE---VPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKE 706
L I G+ + G V Q + + I NI +G+
Sbjct: 306 LRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI---VPQDTVLFNDTIAYNIKYGRP 362
Query: 707 -MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYL 765
E A +A + ++ L G T +GERG+ LSGG+KQR+ IAR + ++ I +
Sbjct: 363 DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILI 422
Query: 766 FDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKY 825
D+ SA+D HT Q L + + +T + + H++ + AD I+V+ +G+I + G +
Sbjct: 423 LDEATSALDTHT-EQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTH 481
Query: 826 NDLINSGTDFMEL 838
+L+ +G + E+
Sbjct: 482 EELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 1e-19
Identities = 58/231 (25%), Positives = 109/231 (47%), Gaps = 36/231 (15%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDI--SLI 1314
L+ I+ P + T ++G +G GKSTL++ L R+ + G++L+DG +I +
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 1315 GLHDLRSRLSIIPQDPVMFEGTVRSN---------LDPLEESTDEQIWEALDKCQLGDEV 1365
+ +LR R+ ++ Q P F ++ N + E DE + +L K L DEV
Sbjct: 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKEL--DEIVESSLKKAALWDEV 139
Query: 1366 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTL 1425
K+ +L ++ S GQ+Q +C+ R L + ++L++DE T+++D + I++ +
Sbjct: 140 --KD-RLH----KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELI 192
Query: 1426 RQHFSDCTVLTIAH------RITSVIDSDLVLLLNHGLIEEFDNPANLLEN 1470
+ T++ + H R+ SD G + EF + N
Sbjct: 193 TELKKKYTIVIVTHNMQQAARV-----SDYTAFFYLGELVEFGPTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 2e-19
Identities = 61/258 (23%), Positives = 119/258 (46%), Gaps = 49/258 (18%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
++L +++ + VL+ ++ GE ++G +G GKSTL++ + + EP +G+IL
Sbjct: 4 LELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFE-GTVRSNLD-PL------EESTDEQIWEALD 1357
IDG D++ L + ++++ Q+ ++ TV N+ L + D+++ E
Sbjct: 62 IDGRDVT--DLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK 119
Query: 1358 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT 1417
L + +K +L S GQRQ V L R L+++ K+ +LDE +++D
Sbjct: 120 LLGLEHLLNRKPLQL-----------SGGQRQRVALARALVRKPKVFLLDEPLSNLDAK- 167
Query: 1418 DNLIQQTLRQHFSDCTVLTIAHR---ITSVI---D-------SDLVLLLNHGLIEEFDNP 1464
LR + + H T++ D +D ++++N G I++ P
Sbjct: 168 -------LRVLMR--SEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTP 218
Query: 1465 ANLLENKSSSFSQLVAEY 1482
L E ++ F VA +
Sbjct: 219 LELYERPANLF---VAGF 233
|
Length = 338 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 88.6 bits (221), Expect = 2e-19
Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 38/219 (17%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L +S + GE G++G G+GK+TL + + P +G +L DG DI+ + H+ +
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHE-IA 73
Query: 1322 RLSIIP--QDPVMFEG-TVRSNLD-----------------PLEESTDEQIWEALDKCQL 1361
RL I Q P +F TV N+ E E+ E L++ L
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133
Query: 1362 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA-TDNL 1420
D + G+L S GQ++ + + R L K+L+LDE A ++ T+ L
Sbjct: 134 ADLADRPAGEL-----------SYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEEL 182
Query: 1421 IQ--QTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHG 1456
+ + LR+ TVL + H + V+ +D V +L+ G
Sbjct: 183 AELIRELRER--GITVLLVEHDMDVVMSLADRVTVLDQG 219
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 3e-19
Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 21/235 (8%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
+ ++ T GE ++G +GSGK+T ++ + R++EP +G+ILIDG DIS + +LR
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75
Query: 1322 RLSIIPQDPVMFEG-TVRSN-------LDPLEESTDEQIWEALDKCQLGDEVRKKEGKLD 1373
++ + Q +F TV N L +E ++ E LD L + + +
Sbjct: 76 KIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGL--DPSEYADRYP 133
Query: 1374 SKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR--QHFSD 1431
++ S GQ+Q V + R L IL++DE ++D T +Q+ ++ Q
Sbjct: 134 HEL-------SGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELG 186
Query: 1432 CTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSF-SQLVAEYTL 1484
T++ + H I + +D + +++ G I ++D P +L N ++ F E
Sbjct: 187 KTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESER 241
|
Length = 309 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 4e-19
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 31/214 (14%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-- 1319
L+G+S + GE IVG +GSGKSTL+ L + P +G++ +DG DIS + +L
Sbjct: 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78
Query: 1320 --RSRLSIIPQD----PVMFEGTVRSNLD-PLE------ESTDEQIWEALDKCQLGDEVR 1366
R + + Q P + T N++ PL + E+ E L++ LGD +
Sbjct: 79 FRRRHIGFVFQSFNLLPDL---TALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN 135
Query: 1367 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR 1426
+L S GQ+Q V + R L KI++ DE T ++D+ T + + LR
Sbjct: 136 HYPSEL-----------SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLR 184
Query: 1427 Q--HFSDCTVLTIAHRITSVIDSDLVLLLNHGLI 1458
+ + T++ + H +D ++ L G I
Sbjct: 185 ELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 4e-19
Identities = 61/243 (25%), Positives = 116/243 (47%), Gaps = 27/243 (11%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----P 1299
I++ +L + Y + L+ I+ P + T ++G +G GKSTL+++L R+ +
Sbjct: 1 AIEIENLNLFYGEKE--ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1300 AAGQILIDGIDI--SLIGLHDLRSRLSIIPQDPVMFEGTVRSN---------LDPLEEST 1348
G++L DG DI I + +LR R+ ++ Q P F ++ N + +E
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKE-L 117
Query: 1349 DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDE 1408
DE + E+L K L DEV+ ++ ++ S GQ+Q +C+ R L ++L+LDE
Sbjct: 118 DEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDE 170
Query: 1409 ATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANL 1467
T+++D I++ +++ T++ + H + SD G + E+ +
Sbjct: 171 PTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230
Query: 1468 LEN 1470
N
Sbjct: 231 FTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 5e-19
Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 34/185 (18%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
I++ +L + VL+GI T GE I+G +GSGKSTL++ + + EP +G I+
Sbjct: 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 1306 IDGIDI--SLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIW---------- 1353
IDG+ + +++LR ++ ++ Q +F +L LE T I
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFP-----HLTVLENITLAPIKVKGMSKAEAE 113
Query: 1354 ----EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEA 1409
E L+K L D+ +L S GQ+Q V + R L K+++ DE
Sbjct: 114 ERALELLEKVGLADKADAYPAQL-----------SGGQQQRVAIARALAMNPKVMLFDEP 162
Query: 1410 TASVD 1414
T+++D
Sbjct: 163 TSALD 167
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 5e-19
Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 21/205 (10%)
Query: 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQS 689
P + D++L V+ G + G G+GK++ L + GE+ SGT + G +
Sbjct: 12 KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGY--SIRTD 69
Query: 690 PWIQSGKI----EDNILFGKEMN-RE--RYNAVLDACSLKK-----DLEILSFGDQTVIG 737
+ + + LF E+ RE R+ A L + +L + G
Sbjct: 70 RKAARQSLGYCPQFDALF-DELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN 128
Query: 738 ERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIY 797
+R LSGG K+++ +A AL + L D+P S +D + ++ +++L + +++I
Sbjct: 129 KRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW-DLILEVRKGRSIIL 187
Query: 798 VTHQ---VEFLPAADLILVMKDGKI 819
TH E L D I +M DGK+
Sbjct: 188 TTHSMDEAEAL--CDRIAIMSDGKL 210
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 5e-19
Identities = 77/255 (30%), Positives = 124/255 (48%), Gaps = 42/255 (16%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE--PAA- 1301
KI++ DL+V + VL G++ P T ++G +GSGKSTL++ R++E P A
Sbjct: 3 KIEIRDLKVSFGQVE--VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 1302 --GQILIDGIDISLIGLHDLRSRLSIIPQDP------VMFE----GTVRSNLDPLEESTD 1349
G++ +DG DI + + +LR R+ ++ Q P +FE G + L ++
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ 120
Query: 1350 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEA 1409
E++ AL+K QL DEV+ + K+ S GQ+Q +C+ R L + ++L+ DE
Sbjct: 121 ERVRWALEKAQLWDEVKDRLDAPAGKL-------SGGQQQRLCIARALAFQPEVLLADEP 173
Query: 1410 TASVDTATDNLIQQTLRQHFSDCTVLTIAH------RITSVIDSDLVLLLNHGLIEE--- 1460
TA++D I+ + D T++ + H RI SD V L G I E
Sbjct: 174 TANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARI-----SDYVAFLYKGQIVEWGP 228
Query: 1461 ----FDNPANLLENK 1471
F NP + L K
Sbjct: 229 TREVFTNPRHELTEK 243
|
Length = 250 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 6e-19
Identities = 74/211 (35%), Positives = 102/211 (48%), Gaps = 24/211 (11%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------- 683
L DI+L + G VA+ G GSGK++LL I G + SG ++ GT
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD 73
Query: 684 ---AYVAQS-PWIQSGKIEDNILFGKEM--NRERYNAVLDACSLKKDLEILSFGDQTVIG 737
+V Q + + DNI FG + RER NA A K ++L +
Sbjct: 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNA---AAIKAKVTQLLEMVQLAHLA 130
Query: 738 ER-GINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK--- 793
+R LSGGQKQR+ +ARAL + I L D+PF A+DA L + L L +
Sbjct: 131 DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRR--WLRQLHEELKF 188
Query: 794 TVIYVTH-QVEFLPAADLILVMKDGKITQAG 823
T ++VTH Q E + AD ++VM G I QAG
Sbjct: 189 TSVFVTHDQEEAMEVADRVVVMSQGNIEQAG 219
|
Length = 353 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 7e-19
Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 30/185 (16%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS-LIG--LHD 1318
L+ ++ GE I+G +G+GKSTL+++L +V+P +G+IL +G+ I+ L G L
Sbjct: 19 ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRK 78
Query: 1319 LRSRLSIIPQDP-----------VMF-----EGTVRSNLDPLEESTDEQIWEALDKCQLG 1362
LR + +I Q V+ T RS + Q +AL++ +
Sbjct: 79 LRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL 138
Query: 1363 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ 1422
D+ ++ L S GQ+Q V + R L+++ KI++ DE AS+D + +
Sbjct: 139 DKAYQRASTL-----------SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVM 187
Query: 1423 QTLRQ 1427
L+
Sbjct: 188 DILKD 192
|
Length = 258 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 9e-19
Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 33/228 (14%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 683
P +++ +L + G RVA+ G GSGKS++ + G SG + G
Sbjct: 493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLA 552
Query: 684 ---AYVAQSPWIQSGKIEDNI-LFGKEMNRERYNAVLDACSLKKDLEI------LSFGDQ 733
A V Q ++ G + DN+ L+ + ++ AC KD I G
Sbjct: 553 NSVAMVDQDIFLFEGTVRDNLTLWDPTIPDA---DLVRAC---KDAAIHDVITSRPGGYD 606
Query: 734 TVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793
+ E G NLSGGQ+QR++IARAL ++ I + D+ SA+D T ++++ L +
Sbjct: 607 AELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET-----EKIIDDNLRRR 661
Query: 794 --TVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELV 839
T I V H++ + D I+V++ GK+ Q G + +L G + L+
Sbjct: 662 GCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 9e-19
Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 24/213 (11%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-- 1319
L+ ++ GE IVG +GSGKSTL+ L + +P +G++LI+G D++ + +L
Sbjct: 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79
Query: 1320 --RSRLSIIPQD-PVMFEGTVRSNLD-PLE------ESTDEQIWEALDKCQLGDEVRKKE 1369
R ++ + Q+ ++ + TV N++ PL E L+ L D + KK
Sbjct: 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKK- 138
Query: 1370 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ-- 1427
K +E S GQ+Q V + R L+ KI++ DE T ++D+ T + + LR+
Sbjct: 139 -----KPSE----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN 189
Query: 1428 HFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEE 1460
T++ + H +D V+ L G IEE
Sbjct: 190 KERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 27/212 (12%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
LKDI+L + G A+ G G GKS+LL + L G + L G Y
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
V Q P G I DN+ +G ++ + LD +++ L + D+
Sbjct: 76 VLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE-RVEEALRKAALWDEVK 134
Query: 736 IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTV 795
+ LSGGQ+QR+ +ARAL + ++ L D+P SA+D + + +E++ L T+
Sbjct: 135 DRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIS-TAKIEELIAELKKEYTI 193
Query: 796 IYVTH---QVEFLPAADLILVMKDGKITQAGK 824
+ VTH Q + AD + +G++ + G
Sbjct: 194 VIVTHNMQQAARV--ADRTAFLLNGRLVEFGP 223
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-18
Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 36/226 (15%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI---GLHD 1318
L+ +S + P GE GI+GR+G+GKSTLI+ + + P +G +L+DG D++L+ L
Sbjct: 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRK 79
Query: 1319 LRSRLSIIPQDPVMFEG-TVRSNLD-PLE------ESTDEQIWEALDKCQLGDEVRKKEG 1370
R R+ +I Q + TV N+ PLE +E++ E L+ L D+
Sbjct: 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPA 139
Query: 1371 KLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR---Q 1427
+L S GQ+Q V + R L K+L+ DEAT+++D T I LR +
Sbjct: 140 QL-----------SGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR 188
Query: 1428 HFSDCTVLTIAHRITSVIDS--DLVLLLNHGLIEE-------FDNP 1464
T++ I H + V+ D V ++ G + E F NP
Sbjct: 189 EL-GLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEVFANP 232
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 64/250 (25%), Positives = 113/250 (45%), Gaps = 49/250 (19%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309
+L Y P L+ I+ GE I+G +G+GKSTL++ + R+VEP++G IL++G
Sbjct: 6 NLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGT 64
Query: 1310 DISLIGLHDLRS----------RLSIIPQDPVM---------FEGTVRSNLDPLEESTDE 1350
DI+ + LR ++I + V+ ++ T RS L E E
Sbjct: 65 DITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKE 124
Query: 1351 QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEAT 1410
+ AL++ L D+ ++ +L S GQ+Q V + R L ++ +++ DE
Sbjct: 125 RALSALERVGLADKAYQRADQL-----------SGGQQQRVAIARALAQQPDLILADEPI 173
Query: 1411 ASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID----------SDLVLLLNHGLIEE 1460
AS+D T + L++ + IT +I+ +D ++ L G I
Sbjct: 174 ASLDPKTSKQVMDYLKR-------INKEDGITVIINLHQVDLAKKYADRIVGLKAGEI-V 225
Query: 1461 FDNPANLLEN 1470
FD + L++
Sbjct: 226 FDGAPSELDD 235
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 1e-18
Identities = 78/265 (29%), Positives = 106/265 (40%), Gaps = 54/265 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCG---------TKAY 685
LKDI+L V G V + G G GK++LL I G E +GT+ G + Y
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT-AGTIYQGGRDITRLPPQKRDY 78
Query: 686 --VAQS----PWIQSGKIEDNI---LFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVI 736
V QS P + + DNI L + M R + E+L
Sbjct: 79 GIVFQSYALFP---NLTVADNIAYGLKNRGMGRAEVAE--------RVAELLDLVGLPGS 127
Query: 737 GERGIN-LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-----LGLL 790
+ LSGGQ+QR+ +ARAL + L D+P SA+DA HL E+ LG+
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGV- 186
Query: 791 SSKTVIYVTH-QVEFLPAADLILVMKDGKITQAGK----YN--------DLINSGTDFME 837
T I VTH Q E L AD I+VM G I Q G Y D +
Sbjct: 187 ---TTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFVGEVNWLPG 243
Query: 838 LVGAHEQALLALGSIEGRPASERAS 862
G +A + ++ P +
Sbjct: 244 TRGGGSRARVGGLTLACAPGLAQPG 268
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 85.6 bits (213), Expect = 2e-18
Identities = 63/224 (28%), Positives = 98/224 (43%), Gaps = 40/224 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI--- 692
LK ++L V G +A+ G GSGKS+LL I+G + SG + + G +
Sbjct: 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75
Query: 693 --------QSG------KIEDNILF--------GKEMNRERYNAVLDACSLKKDLEILSF 730
QSG + +N+ F +E RE L+A L+ ++
Sbjct: 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP- 134
Query: 731 GDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL 790
LSGG K+R+ +ARAL D ++ L+D+P + +D S + +++ L
Sbjct: 135 ----------AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA-SGVIDDLIRSLK 183
Query: 791 SSK--TVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDLINS 831
T I VTH ++ AD I V+ DGKI G +L S
Sbjct: 184 KELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 2e-18
Identities = 60/202 (29%), Positives = 102/202 (50%), Gaps = 24/202 (11%)
Query: 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ--SGKI 697
+L V G VA+ G G+GKS+LL+ I G + SG++K+ +++ +P+ + S
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVND-QSHTGLAPYQRPVSMLF 76
Query: 698 EDNILFGKEMNRER----YNAVLDACSLKKDLEILSFGDQTVIG---ERGIN-LSGGQKQ 749
++N LF R+ + L + +++ +++ Q I +R LSGGQ+Q
Sbjct: 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQE-KVVDAAQQVGIADYLDRLPEQLSGGQRQ 135
Query: 750 RIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS------KTVIYVTHQVE 803
R+ +AR L + + I L D+PFSA+D L +E +L L+ +T++ VTH +
Sbjct: 136 RVALARCLVRPNPILLLDEPFSALDP-----LLREEMLALVKQLCSERQRTLLMVTHHLS 190
Query: 804 FLPA-ADLILVMKDGKITQAGK 824
A A I V+ GKI
Sbjct: 191 DARAIASQIAVVSQGKIKVVSD 212
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 2e-18
Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 24/237 (10%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304
I + + RY L+ +S + GE IVG GSGKSTL + L ++ P AG I
Sbjct: 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 1305 LIDGIDISLIGLHDLRSRLSIIPQDP-VMFEG-TVRSNLD--------PLEESTDEQIWE 1354
+ G+ +S + D+R ++ ++ Q+P F G TV+ ++ P EE E++ +
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMV-ERVDQ 123
Query: 1355 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
AL + + D + ++ +L S GQ+Q V + VL + I++LDEAT+ +D
Sbjct: 124 ALRQVGMEDFLNREPHRL-----------SGGQKQRVAIAGVLALQPDIIILDEATSMLD 172
Query: 1415 TATDNLIQQTLRQ--HFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLE 1469
+ +T+RQ TVL+I H + +D V+++N G I E P + +
Sbjct: 173 PRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 3e-18
Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 15/228 (6%)
Query: 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------ 683
++ P LK + + G +V +CG GSGKSSL V G + + G
Sbjct: 31 NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPL 90
Query: 684 -------AYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVI 736
+ + Q P + SG I N+ + +R L+ LK ++ L G V+
Sbjct: 91 HTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVV 150
Query: 737 GERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVI 796
E G N S GQ+Q +ARA + S I + D+ +++D T ++ Q+V++ + +TV+
Sbjct: 151 TEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT-ENILQKVVMTAFADRTVV 209
Query: 797 YVTHQVEFLPAADLILVMKDGKITQAGKYNDLI-NSGTDFMELVGAHE 843
+ H+V + ADL+LV+ G + + +L+ F LV +
Sbjct: 210 TIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRTDK 257
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 3e-18
Identities = 60/252 (23%), Positives = 109/252 (43%), Gaps = 33/252 (13%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304
+++ + + VL+ I+ + GE I+G +G GKSTL++ + + +P +G++
Sbjct: 3 LLEIEGVSKSFGGV--EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1305 LIDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLD-PLE------ESTDEQIWEAL 1356
L+DG ++ G + + Q+ + TV N+ LE E+ E L
Sbjct: 61 LLDGRPVTGPG-----PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 1357 DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA 1416
+ L K +L S G RQ V + R L R K+L+LDE ++D
Sbjct: 116 ELVGLAGFEDKYPHQL-----------SGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 1417 TDNLIQQTLRQ--HFSDCTVLTIAHRITSVID-SDLVLLLNHG---LIEEFDNPANLLEN 1470
T +Q L + + TVL + H + + +D V++L++ + EE +
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPRI 224
Query: 1471 KSS-SFSQLVAE 1481
+ F +L E
Sbjct: 225 RGDPEFLELREE 236
|
Length = 248 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 3e-18
Identities = 67/219 (30%), Positives = 98/219 (44%), Gaps = 42/219 (19%)
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCG---TKAYVAQSP--- 690
+L V G VA+ G G+GKS+LL+ I G E P SG + + G T + A+ P
Sbjct: 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA-SGEILINGVDHTASPPAERPVSM 75
Query: 691 WIQSGK------IEDNILFG-------KEMNRERYNAVLDACSLKKDLEILSFGDQTVIG 737
Q + NI G RE+ A L L+ L G
Sbjct: 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-------G 128
Query: 738 ERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL---LGLLSSK- 793
E LSGGQ+QR+ +AR L ++ I L D+PFSA+D L E+L L +
Sbjct: 129 E----LSGGQRQRVALARCLVREQPILLLDEPFSALD----PALRAEMLALVSQLCDERK 180
Query: 794 -TVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830
T++ VTH E AD ++ + +G+I G +L++
Sbjct: 181 MTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 4e-18
Identities = 58/226 (25%), Positives = 91/226 (40%), Gaps = 54/226 (23%)
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------- 683
L D++ + G + + G GSGKS+L ILG + SG++ G
Sbjct: 16 GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRR 75
Query: 684 ---------AYVAQ------SPWIQSGKIEDNI-----LFGKEMNRERYNAV--LDACSL 721
V Q +P + I + I + GK +E L +
Sbjct: 76 LRKIRRKEIQMVFQDPMSSLNPRM---TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGV 132
Query: 722 KKDLEIL-SFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSH 780
E+L + + LSGGQ+QR+ IARAL + + + D+P SA+D
Sbjct: 133 GLPEEVLNRYPHE---------LSGGQRQRVAIARALALNPKLLIADEPTSALDVSV--- 180
Query: 781 LFQEVLLGLL------SSKTVIYVTHQVEFLPA-ADLILVMKDGKI 819
Q +L LL T++++TH + + AD + VM GKI
Sbjct: 181 --QAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 4e-18
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 35/166 (21%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
+L G+S T P GE ++GR G+GK+TL++T+ ++ P +G I DG DI+ + H+ R+
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE-RA 73
Query: 1322 RLSI--IPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEG-------- 1370
R I +P+ +F TV NL LG R++
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENL------------------LLGAYARRRAKRKARLERV 115
Query: 1371 -----KLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATA 1411
+L + + S G++Q++ + R L+ R K+L+LDE +
Sbjct: 116 YELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSE 161
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 5e-18
Identities = 64/239 (26%), Positives = 117/239 (48%), Gaps = 24/239 (10%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L+ +S G+ I+G TGSGKS L++T+ ++P +G+IL++G DI+ L +
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKR 71
Query: 1322 RLSIIPQDPVMFEG-TVRSNLD-PLEESTDEQIWEALDKCQLGDEVRKKEGKL--DSKVT 1377
+S +PQ+ +F TV N+ L++ +DK ++ +V + L D +
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRK-------VDKKEIERKVLEIAEMLGIDHLLN 124
Query: 1378 ENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR--QHFSDCTVL 1435
E S G++Q V + R L+ KIL+LDE +++D T +++ L+ + TVL
Sbjct: 125 RKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVL 184
Query: 1436 TIAHRITSV-IDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSFENL 1493
+ H +D V ++ +G + + P + + + F VAE+ F N+
Sbjct: 185 HVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEF---VAEFL-----GFNNI 235
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 5e-18
Identities = 63/255 (24%), Positives = 111/255 (43%), Gaps = 38/255 (14%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
I+ ++ RY V ++ GE ++G +GSGK+T ++ + R++EP +G+I
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFE--------GTVRSNLDPLEESTDEQIWEALD 1357
IDG DI +LR ++ + Q +F V L +E E+ E L
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLA 119
Query: 1358 KCQLGDE--VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT 1415
L + +L S GQ+Q V + R L +L++DE ++D
Sbjct: 120 LVGLDPAEFADRYPHEL-----------SGGQQQRVGVARALAADPPLLLMDEPFGALDP 168
Query: 1416 AT-DNL------IQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANL 1467
T D L +QQ L + T++ + H I +D + ++ +G I + P +
Sbjct: 169 ITRDQLQEEFKRLQQELGK-----TIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
Query: 1468 LENKSSSFSQLVAEY 1482
L + ++ F VAE+
Sbjct: 224 LRSPANDF---VAEF 235
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 5e-18
Identities = 44/191 (23%), Positives = 75/191 (39%), Gaps = 22/191 (11%)
Query: 1254 RYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL 1313
Y + +S GE G++G G+GK+T ++ L + P +G I+G I
Sbjct: 9 TYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSI-R 67
Query: 1314 IGLHDLRSRLSIIPQDPVMFEG-TVRSNLD--------PLEESTDEQIWEALDKCQLGDE 1364
R L PQ +F+ TVR +L P E +E L L D
Sbjct: 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELL-LRVLGLTD- 125
Query: 1365 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424
K + + S G ++ + L L+ +L+LDE T+ +D A+ I
Sbjct: 126 ------KANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDL 175
Query: 1425 LRQHFSDCTVL 1435
+ + +++
Sbjct: 176 ILEVRKGRSII 186
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 82.1 bits (204), Expect = 7e-18
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 53/192 (27%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
L ++L V G A+ G G+GKS+L+ + G SG + + G + A SP
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA-SP----- 69
Query: 696 KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGIN----LSGGQKQRI 751
++ R GI LS G++Q +
Sbjct: 70 ---------RDARR-----------------------------AGIAMVYQLSVGERQMV 91
Query: 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS--KTVIYVTHQV-EFLPAA 808
+IARAL +++ + + D+P +A+ LF+ ++ L + VI+++H++ E A
Sbjct: 92 EIARALARNARLLILDEPTAALTPAEVERLFK--VIRRLRAQGVAVIFISHRLDEVFEIA 149
Query: 809 DLILVMKDGKIT 820
D + V++DG++
Sbjct: 150 DRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 7e-18
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 15/194 (7%)
Query: 1252 QVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI 1311
QV Y +L IS + GE I G +G GKSTL++ + ++ P +G +L +G D+
Sbjct: 8 QVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDV 67
Query: 1312 SLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD-PLE---ESTDEQIWEALDKCQLGDEVRK 1367
S + R ++S Q P +F TV NL P + D L
Sbjct: 68 STLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDL---------LA 118
Query: 1368 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ 1427
+ DS +T+N S G++Q + L R L KIL+LDE T+++D + I++ + +
Sbjct: 119 RFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHR 178
Query: 1428 HFS--DCTVLTIAH 1439
+ + VL I H
Sbjct: 179 YVREQNVAVLWITH 192
|
Length = 223 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 7e-18
Identities = 59/203 (29%), Positives = 103/203 (50%), Gaps = 29/203 (14%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA---------- 684
L D++L ++ G +A+ G G+GK++L + G + + SG++ L G
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG 74
Query: 685 YVAQSPWIQ--SGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGIN 742
YV Q Q + + + +L G +E A ++ KDL++ + ++ ++
Sbjct: 75 YVMQDVDYQLFTDSVREELLLG---LKELDAGNEQAETVLKDLDLYALKER-----HPLS 126
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV--LLGLLSS--KTVIYV 798
LSGGQKQR+ IA AL D+ +FD+P S +D ++ + V L+ L++ K VI +
Sbjct: 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK---NM-ERVGELIRELAAQGKAVIVI 182
Query: 799 THQVEFLP-AADLILVMKDGKIT 820
TH EFL D +L++ +G I
Sbjct: 183 THDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 8e-18
Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 44/214 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW--IQ 693
L ++L V G A+ G G+GKS+L+ + G P SG + + G K SP +
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDG-KPVAFSSPRDALA 82
Query: 694 SG--------------KIEDNILFG------------KEMNRERYNAVLDACSLKKDLEI 727
+G + +NI G K M R R +L L D +
Sbjct: 83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAM-RRRARELLARLGLDIDPD- 140
Query: 728 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL 787
T++G +LS Q+Q ++IARAL D+ + + D+P +A+ LF +++
Sbjct: 141 ------TLVG----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF-DLIR 189
Query: 788 GLLSS-KTVIYVTHQVEFLPA-ADLILVMKDGKI 819
L + +IY++H+++ + AD I V++DG++
Sbjct: 190 RLKAQGVAIIYISHRLDEVFEIADRITVLRDGRV 223
|
Length = 500 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 8e-18
Identities = 79/310 (25%), Positives = 127/310 (40%), Gaps = 50/310 (16%)
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYV----------- 686
+ +L + G + G GSGKS+LL + G P G++ + V
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 687 --------------AQSPWIQSGKIEDNILFGKEM----NRERYNAVLDACSLKKDLEIL 728
A PW +E+N+ FG EM ER V + LE++
Sbjct: 102 RLRTHRVSMVFQQFALLPWRT---VEENVAFGLEMQGMPKAERRKRV------DEQLELV 152
Query: 729 SFGD--QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786
GE LSGG +QR+ +ARA ++ I L D+PFSA+D + L Q+ L
Sbjct: 153 GLAQWADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQL-QDEL 207
Query: 787 LGLLS--SKTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDLI-NSGTDFMELVGAH 842
L L S KT+++V+H + E L + I +M+ G+I Q G +++ N D++ AH
Sbjct: 208 LELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFVAH 267
Query: 843 EQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEV-AVSKGQLVQE 901
L L + + +G ++ R ++ Q +A V+ QE
Sbjct: 268 TNPLNVLTARDLMRPLTTLEKVDGEWCVSKRYDTWLKTADKQVRRAAAGLPVAAWAAEQE 327
Query: 902 EEREKGKVGF 911
E +
Sbjct: 328 VESLEKLPTV 337
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 1e-17
Identities = 66/240 (27%), Positives = 113/240 (47%), Gaps = 32/240 (13%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
I++ +L + + VL+GIS + GE I+G +GSGKSTL++ L + EP +G I
Sbjct: 3 IEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 1306 IDGIDISL-IGLHDLRSRLSIIPQDPVMFEG-TVRSN--LDP---LEESTDEQIWEA--- 1355
+DG D+ + LR ++ ++ Q +F TV N L P + S E +A
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALEL 120
Query: 1356 LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT 1415
L+K L D+ +L S GQ+Q V + R L K+++ DE T+++D
Sbjct: 121 LEKVGLADKADAYPAQL-----------SGGQQQRVAIARALAMDPKVMLFDEPTSALDP 169
Query: 1416 ATDNLIQQTLRQ-HFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEE-------FDNPAN 1466
+ ++ T++ + H + + +D V+ ++ G I E FDNP +
Sbjct: 170 ELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKS 229
|
Length = 240 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 1e-17
Identities = 62/255 (24%), Positives = 114/255 (44%), Gaps = 37/255 (14%)
Query: 1195 TLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVR 1254
ATL+ A + + + + T P+ I+ D I L +L +R
Sbjct: 351 DWRATLLRLA-EFRQALEAAQM---DTEKPARTGRRIDFDDNADH-----GITLENLSLR 401
Query: 1255 YAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI 1314
P +L ++ GE+ I G +G+GK++L++ L + +G+I +
Sbjct: 402 -TPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA------ 454
Query: 1315 GLHDLRSRLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIWEALDKCQLGDEVRKKEGK 1371
S L +PQ P + +GT+R L + + +D ++ L K LGD + + +
Sbjct: 455 -----DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE 509
Query: 1372 LDSKVTENGENWSM----GQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ 1427
W G++Q + R+LL + K + LDEAT+++D T++ + Q L++
Sbjct: 510 DR---------WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE 560
Query: 1428 HFSDCTVLTIAHRIT 1442
D TV+++ HR T
Sbjct: 561 ELPDATVISVGHRPT 575
|
Length = 604 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 1e-17
Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 33/244 (13%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304
I++ + + + ++L G+ P GE I+G +GSGKSTL++ + ++ P G+I
Sbjct: 8 LIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 1305 LIDGIDI---SLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLD-PLEESTD-------EQI 1352
LIDG DI S L+++R R+ ++ Q +F TV N+ PL E T E +
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 1353 WEALDKCQL-GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATA 1411
L+ L G +L S G R+ V L R + ++L LDE T+
Sbjct: 126 LMKLELVGLRGAAADLYPSEL-----------SGGMRKRVALARAIALDPELLFLDEPTS 174
Query: 1412 SVD----TATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPAN 1466
+D D LI + L TV+ + H + S++ +D V +L G + P
Sbjct: 175 GLDPISAGVIDELI-RELNDAL-GLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232
Query: 1467 LLEN 1470
LL +
Sbjct: 233 LLAS 236
|
Length = 263 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 62/229 (27%), Positives = 95/229 (41%), Gaps = 45/229 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
LK+INL + A+ G G GKS+LL + L +I G + G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC---SLKK--------- 723
V Q P I DNI +G ++ + LD SLKK
Sbjct: 77 VVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD 136
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
L + G LSGGQ+QR+ IARAL + ++ L D+P SA+D + +
Sbjct: 137 RLHDSALG-----------LSGGQQQRLCIARALAVEPEVLLLDEPTSALDP-IATGKIE 184
Query: 784 EVLLGLLSSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINS 831
E++ L T++ VTH ++ +D DG++ + G + +
Sbjct: 185 ELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 2e-17
Identities = 59/228 (25%), Positives = 98/228 (42%), Gaps = 39/228 (17%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------- 683
L ++L V G +A+ G GSGKS+LL ILG + G + + G
Sbjct: 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79
Query: 684 AYVAQSPW---IQSG------KIEDNILF--------GKEMNRERYNAVLDACSLKKDLE 726
Y + Q G + +N+ F + + RE L+ L+
Sbjct: 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAA 139
Query: 727 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786
L + + LSGG ++R+ +ARA+ D ++ D+P S +D + + + E++
Sbjct: 140 DL-YPSE---------LSGGMRKRVALARAIALDPELLFLDEPTSGLDPIS-AGVIDELI 188
Query: 787 LGLLSS--KTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDLINS 831
L + TVI VTH + L AD + V+ DGK+ G +L+ S
Sbjct: 189 RELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236
|
Length = 263 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 2e-17
Identities = 54/223 (24%), Positives = 107/223 (47%), Gaps = 26/223 (11%)
Query: 1276 TGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDI--SLIGLHDLRSRLSIIPQ 1328
T I+G +G GK+TL++++ R+ + G+I G DI + + + R ++ ++ Q
Sbjct: 32 TAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQ 91
Query: 1329 DPVMFEGTVRSNLD--------PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380
P F ++ N+ + D + E+L K L DEV+ S++ + G
Sbjct: 92 KPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPG 144
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHR 1440
S GQ+Q +C+ R L ++++LDE T+++D I++ L + + T++ + H
Sbjct: 145 TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHN 204
Query: 1441 ITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEY 1482
I I +D + + G + E+ ++E ++L EY
Sbjct: 205 IGQAIRIADYIAFMYRGELIEYGPTREIVERPK---NKLTEEY 244
|
Length = 250 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 66/205 (32%), Positives = 96/205 (46%), Gaps = 27/205 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS- 694
L DINL++ G V + G GSGK++LL+ I G G+LK+ G + Y A +
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80
Query: 695 ----GKI------------EDNILFGKEMNRERYNAVLDACSLKKD-LEILSFGDQTVIG 737
G I N+ E+ + +A + LE + GD +
Sbjct: 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQ-PNLSY-QEARERARAMLEAVGLGDH--LD 136
Query: 738 ERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGS---HLFQEVLLGLLSSKT 794
NLSGGQKQR+ IARAL + L D+P +A+D+ +G L Q+ L T
Sbjct: 137 YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQK--LAREQGCT 194
Query: 795 VIYVTHQVEFLPAADLILVMKDGKI 819
++ VTH L AD I+ M+DGK+
Sbjct: 195 ILIVTHDNRILDVADRIVHMEDGKL 219
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 3e-17
Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 32/224 (14%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 692
L +++L++ G + + G GSGKS+L + G SG++ L G +
Sbjct: 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKA 79
Query: 693 QSGKIEDNILF---GKEMN---------RERYNAVLDACSLKKDLEIL-SFGDQTVIGER 739
++ ++F +N E + S ++ E+L G +R
Sbjct: 80 FYRPVQ--MVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDR 137
Query: 740 GIN-LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS------S 792
+ LSGGQ+QRI IARAL + + + D+P SA+D Q +L LL
Sbjct: 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSV-----QAQILNLLLELKKERG 192
Query: 793 KTVIYVTHQ---VEFLPAADLILVMKDGKITQAGKYNDLINSGT 833
T ++++H VE + D I VM +G+I + G +L++ +
Sbjct: 193 LTYLFISHDLALVEHM--CDRIAVMDNGQIVEIGPTEELLSHPS 234
|
Length = 252 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 3e-17
Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 22/208 (10%)
Query: 628 DISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---- 683
++ L +I+L V G +A+ G G GKS+LL + + SGTL G
Sbjct: 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL 70
Query: 684 ---------AYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQT 734
+Y AQ+P + +EDN++F ++ R D + L + D +
Sbjct: 71 KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRP----DRAAALDLLARFALPD-S 125
Query: 735 VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK- 793
++ + LSGG+KQRI + R L I L D+ SA+D +E++ + +
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN-KRNIEEMIHRYVREQN 184
Query: 794 -TVIYVTH-QVEFLPAADLILVMKDGKI 819
V+++TH + + + AD ++ ++ G
Sbjct: 185 VAVLWITHDKDQAIRHADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 28/205 (13%)
Query: 1267 SCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSII 1326
T P GE I+G +G+GKSTL+ + PA+G+ILI+G+D + +S++
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHT--ASPPAERPVSML 76
Query: 1327 PQDPVMFEG-TVRSNLD-------PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1378
Q+ +F TV N+ L E++ A + L +++ G+L
Sbjct: 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL------ 130
Query: 1379 NGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN----LIQQTLRQHFSDCTV 1434
S GQRQ V L R L++ IL+LDE +++D A L+ Q + T+
Sbjct: 131 -----SGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE--RKMTL 183
Query: 1435 LTIAHRITSVIDS-DLVLLLNHGLI 1458
L + H D V+ L++G I
Sbjct: 184 LMVTHHPEDAARIADRVVFLDNGRI 208
|
Length = 231 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 4e-17
Identities = 56/242 (23%), Positives = 113/242 (46%), Gaps = 28/242 (11%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
I ++ +Y L+ +S P G+ T IVG GSGKST+ + + I + +G+I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPV-MFEGTV---------RSNLDPLEESTDEQIWEA 1355
+ I+ LR + I+ Q+P F G++ ++ P +E ++ EA
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDE-MHRRVSEA 126
Query: 1356 LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT 1415
L + + + + L S GQ+Q V + VL +++LDEAT+ +D
Sbjct: 127 LKQVDMLERADYEPNAL-----------SGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175
Query: 1416 ATD----NLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENK 1471
+L+++ +H + T+++I H ++ +++D V+++N G + + P + ++
Sbjct: 176 DARQNLLDLVRKVKSEH--NITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
Query: 1472 SS 1473
Sbjct: 234 EE 235
|
Length = 269 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 4e-17
Identities = 70/246 (28%), Positives = 102/246 (41%), Gaps = 50/246 (20%)
Query: 653 GTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP--------WIQS------GKIE 698
G G GK++LL + G SG++ L G V P QS +E
Sbjct: 3 GPSGCGKTTLLRLLAGFEQPDSGSIMLDGED--VTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 699 DNILFG----KEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754
+N+ FG K E VL+A L +++ F D+ + LSGGQ+QR+ +A
Sbjct: 61 ENVAFGLKMRKVPRAEIKPRVLEALRL---VQLEEFADR-----KPHQLSGGQQQRVALA 112
Query: 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-----LGLLSSKTVIYVTH-QVEFLPAA 808
RAL I L D+P SA+D + E+ LG+ T ++VTH Q E + +
Sbjct: 113 RALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI----TFVFVTHDQEEAMTMS 168
Query: 809 DLILVMKDGKITQAGK----YND--------LINSGTDFMELVGAHEQALLALGSIEGRP 856
D I +M+ GKI Q G Y + I F V + + L +EGR
Sbjct: 169 DRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINVFEATVIERKSEQVVLAGVEGRR 228
Query: 857 ASERAS 862
Sbjct: 229 CDIYTD 234
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 6e-17
Identities = 57/234 (24%), Positives = 104/234 (44%), Gaps = 41/234 (17%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
I+ +++ Y P L GI+ + GE +VG +G+GKSTL++ +++ P +G I
Sbjct: 1 IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 1306 IDGIDISLIGLHD-----LRSRLSIIPQD-PVMFEGTVRSNLDPLEESTD-------EQI 1352
++G D+S L LR ++ ++ QD ++ + V N+ E T +++
Sbjct: 60 VNGQDVS--DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRV 117
Query: 1353 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATAS 1412
AL+ +G L K S G++Q V + R ++ IL+ DE T +
Sbjct: 118 PAALE--LVG---------LSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGN 166
Query: 1413 VDTATDNLIQQTLRQ-HFSDCTVLTIAHRITSVIDSDL-------VLLLNHGLI 1458
+D T I L++ + + TV+ H +L V+ L G +
Sbjct: 167 LDPDTTWEIMNLLKKINKAGTTVVVATH------AKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 6e-17
Identities = 61/230 (26%), Positives = 101/230 (43%), Gaps = 39/230 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
+ D +L + G + G GSGKS+ + + + +G + + G
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 684 -----AYVAQS-PWIQSGKIEDNILFGKEM----NRERYNAVLDACSLKKDLE--ILSFG 731
V Q I N G E+ +ER L+ L LE +
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLV-GLEEYEHRYP 127
Query: 732 DQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS 791
D+ LSGG +QR+ +ARAL + DI L D+ FSA+D + Q+ L L +
Sbjct: 128 DE---------LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSM-QDELKKLQA 177
Query: 792 S--KTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYND-LINSGTDFME 837
+ KT++++TH + E + D I++MK G+I Q G ++ L N +++E
Sbjct: 178 TLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVE 227
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 6e-17
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 14/170 (8%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
+ +G+S T GE + G G GK+TL++ L ++ P +G++ +G ++ R+
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74
Query: 1322 RLSIIPQDPVMFEGTVRSNLD---PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1378
L + + E + NL + I +AL L +L
Sbjct: 75 ILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQL------ 128
Query: 1379 NGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQH 1428
S GQ++ + L R+ L R+ + +LDE T ++D A L+ LR H
Sbjct: 129 -----SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH 173
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 6e-17
Identities = 66/215 (30%), Positives = 92/215 (42%), Gaps = 37/215 (17%)
Query: 636 LKDINLKV---FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 692
L D LK+ + + G G+GKS+LL CI G GT+ L GT
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT-------VLF 62
Query: 693 QSGK--------------IEDNILFGKEMN-RERYNAVLDACSLKKDL----EIL-SFGD 732
S K + LF +N RE L ++D E+L G
Sbjct: 63 DSRKKINLPPQQRKIGLVFQQYALF-PHLNVRENLAFGLKRKRNREDRISVDELLDLLGL 121
Query: 733 QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS 792
++ LSGG+KQR+ +ARAL ++ L D+PFSA+D L E L +
Sbjct: 122 DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE--LKQIKK 179
Query: 793 K---TVIYVTHQ-VEFLPAADLILVMKDGKITQAG 823
VI+VTH E AD I+VM+DG++ G
Sbjct: 180 NLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 6e-17
Identities = 72/228 (31%), Positives = 108/228 (47%), Gaps = 24/228 (10%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKA-------- 684
L D++L + G VA+ G GSGK++LL I G E P SGT+ G A
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD-SGTILFGGEDATDVPVQER 74
Query: 685 ---YVAQS-PWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERG 740
+V Q + + DN+ FG + + R +A K E+L + +R
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRV-KPRSERPPEAEIRAKVHELLKLVQLDWLADRY 133
Query: 741 IN-LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK---TVI 796
LSGGQ+QR+ +ARAL + + L D+PF A+DA L L L + T +
Sbjct: 134 PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL--RRWLRRLHDELHVTTV 191
Query: 797 YVTH-QVEFLPAADLILVMKDGKITQAGKYNDLINS-GTDF-MELVGA 841
+VTH Q E L AD ++VM G+I Q G +++ + + F +G
Sbjct: 192 FVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFVYSFLGE 239
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 8e-17
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 1257 PQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG--IDISLI 1314
P P VL+G++ GE ++G G+GKSTL+ L ++ P +G +LIDG +D S
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 1315 GLHDLRSRLSIIPQDP--VMFEGTVRS-------NLDPLEESTDEQIWEALDKCQLGDEV 1365
GL + R R+ ++ QDP +F V NL E + ++ EAL
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASG-- 119
Query: 1366 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTL 1425
L + T S G+++ V + + R +L+LDE TA +D A + L
Sbjct: 120 ------LRERPT---HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAIL 170
Query: 1426 R 1426
R
Sbjct: 171 R 171
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 9e-17
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 54/248 (21%)
Query: 1256 APQMPLVLQGISCTFPG-------------GEKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1302
+ L L+GIS +F G GE ++G G+GKSTL++ L + P +G
Sbjct: 4 STPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG 63
Query: 1303 QILIDGIDISLIGLHDLRSR-LSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQ 1360
+ILIDG ++ D + ++ + Q+ + +V N I+
Sbjct: 64 EILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAEN-----------IF------- 105
Query: 1361 LGDEVRKKEGKLDSK------------------VTENGENWSMGQRQLVCLGRVLLKRSK 1402
LG E ++ G +D K + S+ QRQ+V + R L ++
Sbjct: 106 LGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDAR 165
Query: 1403 ILMLDEATASVDTA-TDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHG-LIE 1459
+L+LDE TA++ T+ L R ++ I+HR+ V + +D + +L G ++
Sbjct: 166 VLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225
Query: 1460 EFDNPANL 1467
A
Sbjct: 226 TRPTAAET 233
|
Length = 500 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 9e-17
Identities = 63/216 (29%), Positives = 93/216 (43%), Gaps = 40/216 (18%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L +S T G ++G G+GKSTL L R+ GQI + G HDLR
Sbjct: 16 ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAG--------HDLRR 67
Query: 1322 -------RLSIIPQDPVM-FEGTVRSNLD--------PLEESTDEQIWEALDKCQLGDEV 1365
RL ++ Q P + + +VR NL E +I E L + L +
Sbjct: 68 APRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAE-ARARIAELLARLGLAE-- 124
Query: 1366 RKKEGKLDSKVTE-NGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424
+ D KV E NG G R+ V + R LL R +L+LDE T +D A+ I
Sbjct: 125 -----RADDKVRELNG-----GHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAH 174
Query: 1425 LRQHFSD--CTVLTIAHRITSVIDSDLVLLLNHGLI 1458
+R D +VL H + + D +++L+ G +
Sbjct: 175 VRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRV 210
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 1e-16
Identities = 60/242 (24%), Positives = 96/242 (39%), Gaps = 53/242 (21%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP----AAGQILIDGIDISLIGLH 1317
++ +S GE GIVG +GSGKSTL L ++ +G++++DG D+ +
Sbjct: 24 AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83
Query: 1318 DLRS----RLSIIPQDP------------VMFEGTVRSNLDPLEESTDEQIWEALDKCQL 1361
++R R+++I QDP + E E+ + E L++ L
Sbjct: 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAV-ELLEQVGL 142
Query: 1362 GDEVRKKE------GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT 1415
D R+ G G RQ V + L + K+L+ DE T T
Sbjct: 143 PDPERRDRYPHQLSG---------------GMRQRVMIAMALALKPKLLIADEPT----T 183
Query: 1416 ATDNLIQQTLRQHFSD------CTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468
A D Q + D VL I H + V + +D V+++ G I E +L
Sbjct: 184 ALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243
Query: 1469 EN 1470
N
Sbjct: 244 SN 245
|
Length = 539 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 1e-16
Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 28/225 (12%)
Query: 1278 IVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMF-EGT 1336
++G +G GK+TL++ L +P +G I++DG D++ + H LR ++++ Q +F T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH-LRH-INMVFQSYALFPHMT 58
Query: 1337 VRSNLD-PLE------ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389
V N+ L+ ++ EAL QL + +K +L S GQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQL-----------SGGQQQ 107
Query: 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR--QHFSDCTVLTIAHRITSVID- 1446
V L R L+ + KIL+LDE +++D + +Q L+ Q T + + H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 1447 SDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSFE 1491
SD + ++ G I + P + E ++ F VA + + + FE
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEIYEEPANLF---VARF-IGEINVFE 208
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 1e-16
Identities = 59/246 (23%), Positives = 113/246 (45%), Gaps = 32/246 (13%)
Query: 1250 DLQVRYAP-QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308
+L Y Q L+G+S GE ++GR G+GK+TL++T+ +V P +G+I+ DG
Sbjct: 8 NLSAGYGKIQ---ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDG 64
Query: 1309 IDISLIGLHDL-RSRLSIIPQDPVMF-EGTVRSNL------DPLEESTDEQIWEALDKC- 1359
DI+ + H+ R ++ +P+ +F TV NL +E+ + + E +
Sbjct: 65 EDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFP 124
Query: 1360 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN 1419
+L + ++ G L S G++Q++ + R L+ R K+L+LDE + +
Sbjct: 125 RLKERRNQRAGTL-----------SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 173
Query: 1420 LIQQTLRQ--HFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFS 1476
I + +++ T+L + ++ +D +L +G I A LL +
Sbjct: 174 EIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP----- 228
Query: 1477 QLVAEY 1482
+ Y
Sbjct: 229 DVREAY 234
|
Length = 237 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 1e-16
Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 14/204 (6%)
Query: 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1320
+ G+S T GE TG++G G+GK+T ++ L ++EP AG +DG D+ + R
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPA-EAR 77
Query: 1321 SRLSIIPQDPVMFEG-TVRSNLD---PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKV 1376
RL + +++ T R NL+ L +++ L++ L D + +E LD +V
Sbjct: 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEE--LADRLGMEE-LLDRRV 134
Query: 1377 TENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD-TATDNLIQQTLRQHFSDCTVL 1435
+S G RQ V + R L+ +L+LDE T +D AT L + + +L
Sbjct: 135 ----GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCIL 190
Query: 1436 TIAHRITSVID-SDLVLLLNHGLI 1458
H + V D V++L+ G +
Sbjct: 191 FSTHIMQEVERLCDRVVVLHRGRV 214
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-16
Identities = 69/213 (32%), Positives = 96/213 (45%), Gaps = 40/213 (18%)
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-----------AY 685
KDINL + G V G G GKS+LL I G SG L + +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79
Query: 686 VAQS----PWIQSGKIEDNILFG-------KEMNRERYNAVLDACSLKKDLEILSFGDQT 734
V QS P + + +N+ FG KE +R N V + L L+
Sbjct: 80 VFQSYALYPHLS---VAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-------- 128
Query: 735 VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV--LLGLLSS 792
+ LSGGQ+QR+ I R L + ++L D+P S +DA + E+ L L
Sbjct: 129 ---RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 793 KTVIYVTH-QVEFLPAADLILVMKDGKITQAGK 824
T+IYVTH QVE + AD I+V+ G++ Q GK
Sbjct: 186 -TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
|
Length = 369 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 2e-16
Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 27/236 (11%)
Query: 1246 IDLLDLQVRYAP-QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304
I++ +L +Y Q L +S GE I+G GSGKST ++ + ++E +GQI
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1305 LIDGIDISLIGLHDLRSRLSIIPQDP-VMFEG-TVRSNLD--------PLEESTDEQIWE 1354
+IDG ++ + D+R ++ ++ Q+P F G TV ++ P EE E++ E
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMK-ERVNE 123
Query: 1355 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
AL+ + D ++ +L S GQ+Q V + + R KI++LDEAT+ +D
Sbjct: 124 ALELVGMQDFKEREPARL-----------SGGQKQRVAIAGAVAMRPKIIILDEATSMLD 172
Query: 1415 -TATDNLIQ--QTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANL 1467
LI+ + +R + TV++I H + V SD VL++ +G +E P L
Sbjct: 173 PEGRLELIKTIKGIRDDY-QMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 2e-16
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 29/205 (14%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
+ L ++ Y + P+ TF GE T IVG +GSGKSTL+ + P +G++L
Sbjct: 1 VRLDKIRFSYG-EQPMHF---DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL 56
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLD-------PLEESTDEQIWEALD 1357
I+G+D++ +S++ Q+ +F TV N+ L + I AL
Sbjct: 57 INGVDVTA--APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALA 114
Query: 1358 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT 1417
+ L ++ G+L S G+RQ V L RVL++ +L+LDE A++D A
Sbjct: 115 RVGLAGLEKRLPGEL-----------SGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
Query: 1418 DNLIQQ---TLRQHFSDCTVLTIAH 1439
+ L + TVL + H
Sbjct: 164 RAEMLDLVLDLHAE-TKMTVLMVTH 187
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (197), Expect = 2e-16
Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 24/214 (11%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDI--SLIG 1315
L GIS F E T ++G +G GKST ++ L R+ + G+I +G +I S +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 1316 LHDLRSRLSIIPQDPVMFEGTVRSNLD--------PLEESTDEQIWEALDKCQLGDEVRK 1367
L +LR + ++ Q P F +V N+ +E D+++ E+L + + E +
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK- 138
Query: 1368 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ 1427
+ N + +S GQ+Q +C+ R L R K+++LDE T+++D + + I++TL +
Sbjct: 139 ------DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME 192
Query: 1428 HFSDCTVLTIAHRI--TSVIDSDLVLLLNHGLIE 1459
T + + H + I L+N LIE
Sbjct: 193 LKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226
|
Length = 251 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 2e-16
Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 25/181 (13%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
ID+ DL V + VL G+ + G G+VG G+GK+TL++ + + P AG +L
Sbjct: 4 IDVSDLSVEFGDTT--VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL 61
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQD-PVMFEGTVR-----------SNLDPLEESTDEQIW 1353
+ G D+ + R++ +PQD + FE VR S D E+ +
Sbjct: 62 VAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVE 121
Query: 1354 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASV 1413
A+++ + D VT S G+RQ V L R L + + +L+LDE TAS+
Sbjct: 122 RAMERTGVAQFA-------DRPVTS----LSGGERQRVLLARALAQATPVLLLDEPTASL 170
Query: 1414 D 1414
D
Sbjct: 171 D 171
|
Length = 402 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 3e-16
Identities = 54/266 (20%), Positives = 99/266 (37%), Gaps = 42/266 (15%)
Query: 592 IASFFCLDDLQPDLVEKQPSGSSETALDIVD--------GNFSWDISSHNPTLKDINLKV 643
+A+ L D + + ++ +E L + + + D++ +
Sbjct: 255 LAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDL 314
Query: 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW------IQ---- 693
G + + G GSGKS+L + G +P SG++ G + IQ
Sbjct: 315 REGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQ 374
Query: 694 --------SGKIEDNI----LFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGI 741
+ D + + A + L +
Sbjct: 375 DPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGL------PPEFLDRYPH 428
Query: 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK---TVIYV 798
LSGGQ+QR+ IARAL + + + D+P SA+D + + LL L + T +++
Sbjct: 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN--LLKDLQEELGLTYLFI 486
Query: 799 THQVEFLPA-ADLILVMKDGKITQAG 823
+H + + AD + VM DG+I + G
Sbjct: 487 SHDLAVVRYIADRVAVMYDGRIVEEG 512
|
Length = 539 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 23/178 (12%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD--- 1318
+L ++ T G+ I+G +GSGKSTL+ + + + +GQ+ ++G + +
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 1319 -LRSRLSIIPQDPVMFEG-TVRSNLD-PLEEST------DEQIWEALDKCQLGDEVRKKE 1369
R +L + Q+ + E TV NLD L+ E+ EAL+K L
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGL-------N 125
Query: 1370 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ 1427
KL K+ E S G++Q V L R +LK +++ DE T S+D + + L +
Sbjct: 126 LKLKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 3e-16
Identities = 65/212 (30%), Positives = 95/212 (44%), Gaps = 38/212 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCG-----TKAY---- 685
L ++L + G + G G GK++LL I G E P SG + L G +
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT-SGEILLDGKDITNLPPHKRPV 74
Query: 686 --VAQS----PWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDL-EILSFGDQTVIGE 738
V Q+ P + + +NI FG + + L +K+ + E L
Sbjct: 75 NTVFQNYALFPHLT---VFENIAFGLRLKK------LPKAEIKERVAEALDLVQLEGYAN 125
Query: 739 RGIN-LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-----LGLLSS 792
R + LSGGQ+QR+ IARAL + + L D+P A+D + E+ LG+
Sbjct: 126 RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGI--- 182
Query: 793 KTVIYVTH-QVEFLPAADLILVMKDGKITQAG 823
T ++VTH Q E L +D I VM GKI Q G
Sbjct: 183 -TFVFVTHDQEEALTMSDRIAVMNKGKIQQIG 213
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 4e-16
Identities = 50/204 (24%), Positives = 95/204 (46%), Gaps = 34/204 (16%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 683
P LK+++ KV G ++ + G G+GKS+L+ + + G +++ G
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81
Query: 684 ---AYVAQSPWIQSGKIEDNI-LFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGER 739
+ Q P + SG I N+ F + + E Y A L+ + E
Sbjct: 82 SSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGA------LR-------------VSEG 122
Query: 740 GINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVT 799
G+NLS GQ+Q + +ARAL + + + D+ +++D T L Q+ + ++ T++ +
Sbjct: 123 GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT-DALIQKTIREEFTNSTILTIA 181
Query: 800 HQVEFLPAADLILVMKDGKITQAG 823
H++ + D ILVM G++ +
Sbjct: 182 HRLRTIIDYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 4e-16
Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 49/233 (21%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG----EVPKISGTLKLCGTK-------- 683
++D++ +V G + + G GSGKS+L ++G SG + L G
Sbjct: 25 VRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84
Query: 684 ---------AYVAQSP---WIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFG 731
A + Q P I D I +E R K+ +E+L
Sbjct: 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQI---REALRLHGKGSRAEA-RKRAVELL--- 137
Query: 732 DQTVIGERGIN------LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV 785
+Q + + LSGG +QR+ IA AL + + D+P +A+D T Q
Sbjct: 138 EQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT-----QAQ 192
Query: 786 LLGLLSS------KTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINS 831
+L LL V+++TH + + AD ++VM G+I + G +++++
Sbjct: 193 ILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 4e-16
Identities = 65/242 (26%), Positives = 120/242 (49%), Gaps = 35/242 (14%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI---VEPA--AGQI 1304
DL V Y + ++GI F + T ++G +GSGKST +++L R+ ++ A GQI
Sbjct: 25 DLHVYYGKKE--AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI 82
Query: 1305 LIDGIDISL--IGLHDLRSRLSIIPQDPVMFEGTVRSNLD-PLE-------ESTDEQIWE 1354
L GIDI+ I ++++R + ++ Q P F ++ N+ LE + DE +
Sbjct: 83 LYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVET 142
Query: 1355 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
+L + L D+V+ K S +T +G GQ+Q +C+ R + + IL++DE +++D
Sbjct: 143 SLKQAALWDQVKDDLHK--SALTLSG-----GQQQRLCIARAIAVKPDILLMDEPASALD 195
Query: 1415 TATDNLIQQTLRQHFSDCTVLTIAH------RITSVIDSDLVLLLNHGLIEEFDNPANLL 1468
+ +++T+ + + T++ + H R SD G + E+D N+
Sbjct: 196 PISTMQLEETMFELKKNYTIIIVTHNMQQAARA-----SDYTAFFYLGDLIEYDKTRNIF 250
Query: 1469 EN 1470
N
Sbjct: 251 TN 252
|
Length = 267 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 20/207 (9%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
VL IS GE G +G G+GK+T ++ + +++P +G+I DG +
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ--KNIEALR 72
Query: 1322 RLSIIPQDPVMF-EGTVRSNL---DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVT 1377
R+ + + P + T R NL L ++I E LD L D +KK
Sbjct: 73 RIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGF----- 127
Query: 1378 ENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLT 1436
S+G +Q + + LL +L+LDE T +D +++ + TVL
Sbjct: 128 ------SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLI 181
Query: 1437 IAHRITSV-IDSDLVLLLNHG-LIEEF 1461
+H ++ + +D + ++N G LIEE
Sbjct: 182 SSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 4e-16
Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 28/226 (12%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
+ + +L Y L+GI+ GE T I+G G+GKSTL Q L I++P++G+IL
Sbjct: 6 LKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 1306 IDG--IDISLIGLHDLRSRLSIIPQDP--VMFEGTVRS-------NLDPLEESTDEQIWE 1354
DG ID S GL LR + ++ QDP +F +V NL E+ +++
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDN 124
Query: 1355 ALDKCQLGDEVRKKEGKLDSKVTENGENW-SMGQRQLVCLGRVLLKRSKILMLDEATASV 1413
AL + + L K T + S GQ++ V + VL+ K+L+LDE TA +
Sbjct: 125 ALKRTGI--------EHLKDKPT----HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGL 172
Query: 1414 DTATDNLIQQTLRQHFS--DCTVLTIAHRITSV-IDSDLVLLLNHG 1456
D + I + L + T++ H I V + D V ++ G
Sbjct: 173 DPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 6e-16
Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 37/214 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTK----------- 683
L D++L++ G + G G+GKS+LL I E P SG++ + G
Sbjct: 22 LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT-SGSVFVDGQDLTALSEAELRQ 80
Query: 684 -----AYVAQSPWIQSGK-IEDNILFGKEMNR----ERYNAVLDACSLKKDLEILSFGDQ 733
+ Q + S + + +N+ F E+ E V + LE++ D+
Sbjct: 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAEL------LELVGLSDK 134
Query: 734 TVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793
LSGGQKQR+ IARAL + I L D+ SA+D T + + LL ++ +
Sbjct: 135 --ADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE--LLKDINRE 190
Query: 794 ---TVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823
T++ +TH++E + D + V+ G++ + G
Sbjct: 191 LGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEG 224
|
Length = 339 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 6e-16
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 20/173 (11%)
Query: 1247 DLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI 1306
+ ++ Y +L +S GE + G+ G+GK+TL + L +++ ++G IL+
Sbjct: 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59
Query: 1307 DGIDISLIGLHDLRSRLSIIPQDP--VMFEGTVRSNLDPLEESTD---EQIWEALDKCQL 1361
+G I + R + + QD +F +VR L + D EQ L L
Sbjct: 60 NGKPIK---AKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDL 116
Query: 1362 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
+ L S GQ+Q + + LL +L+ DE T+ +D
Sbjct: 117 YALKERHPLSL-----------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 6e-16
Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 36/239 (15%)
Query: 1255 YAPQMPLVLQG---ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI 1311
Y+P P+ +G IS G +VG TGSGKSTL+Q +++P++G I I G I
Sbjct: 12 YSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHI 71
Query: 1312 SL----IGLHDLRSRLSIIPQDP--VMFEGTVRS-------NLDPLEESTDEQIWEALDK 1358
+ L LR ++S++ Q P +FE TV N E+ E+ + L K
Sbjct: 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKK 131
Query: 1359 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD 1418
L +++ K S +G GQ + V + V+ +IL LDE A +D
Sbjct: 132 VGLSEDLISK-----SPFELSG-----GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG- 180
Query: 1419 NLIQQTLRQHFSDC-----TVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471
++ + Q F D TV+ + H + V + +D VL+L HG + + +P + +K
Sbjct: 181 ---RKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDK 236
|
Length = 287 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 8e-16
Identities = 57/237 (24%), Positives = 98/237 (41%), Gaps = 36/237 (15%)
Query: 1246 IDLLDLQVRYAPQMP--LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1303
+++ ++ Y L+ IS + GE +VG +G GKSTL++ + + P +G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1304 ILIDGIDISLIGLHDLRSRLSIIPQDPVMFE-GTVRSN-LDPLE------ESTDEQIWEA 1355
+L+DG ++ + Q + TV N LE E+ E
Sbjct: 61 VLVDGEPVT-----GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 1356 LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT 1415
L+ L +L S G RQ V L R L +L+LDE +++D
Sbjct: 116 LELVGLSGFENAYPHQL-----------SGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 1416 ATDNLIQQTL----RQHFSDCTVLTIAHRIT-SVIDSDLVLLLN---HGLIEEFDNP 1464
T +Q+ L R+ TVL + H I +V +D V++L+ ++ E +
Sbjct: 165 LTREQLQEELLDIWRET--GKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 8e-16
Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 30/222 (13%)
Query: 1246 IDLLDLQVRYAPQMPL---VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1302
I L + + PL L G+S G+ ++G G+GKSTL+ + ++P +G
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 1303 QILIDGIDISLIGLHDLRSRLSIIPQDPVM----------------FEGTVRSNLDPLEE 1346
QILIDG+D++ + + L+ + QDP+ G R L E
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNE 121
Query: 1347 STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILML 1406
E L + LG E R L ++ S GQRQ + L L KIL+L
Sbjct: 122 RRRSSFRERLARLGLGLENR-----LSDRI----GLLSGGQRQALSLLMATLHPPKILLL 172
Query: 1407 DEATASVDTATDNLIQQTLRQHFSD--CTVLTIAHRITSVID 1446
DE TA++D T + + + + T L + H + +D
Sbjct: 173 DEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALD 214
|
Length = 263 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-15
Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 29/230 (12%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG---IDISLIGLHD 1318
L IS GE ++G +G+GKSTL++ + + P AG+I ++G D+S + + D
Sbjct: 17 ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD 76
Query: 1319 LRSRLSIIPQDPVMFEG-TVRSN---------LDPLEESTDEQIWEALDKCQLGDEVRKK 1368
++ + Q +F TV N P E ++ E L QL +
Sbjct: 77 --RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY 134
Query: 1369 EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR-- 1426
+L S GQRQ V L R L K+L+LDE ++D +++ LR
Sbjct: 135 PAQL-----------SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL 183
Query: 1427 QHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSF 1475
T + + H ++ +D V++LN G IE+ P + ++ +S F
Sbjct: 184 HDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233
|
Length = 345 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 31/209 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAYVA 687
LK +NL + G +++ G G GKS+LL+ I G SG + L G + V
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 688 QS----PWIQSGKIEDNILFG-----KEMNRERYNAVLDACSLKKDLEILSFGDQTVIGE 738
Q+ PW+ + +NI ++++ A+++ + + ++ G +
Sbjct: 61 QNYSLLPWLT---VRENIALAVDRVLPDLSKSERRAIVE-----EHIALV--GLTEAADK 110
Query: 739 RGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL--SSKTVI 796
R LSGG KQR+ IARAL + L D+PF A+DA T +L QE L+ + TV+
Sbjct: 111 RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNL-QEELMQIWEEHRVTVL 169
Query: 797 YVTHQV-EFLPAADLILVMKDGKITQAGK 824
VTH V E L +D ++++ +G G+
Sbjct: 170 MVTHDVDEALLLSDRVVMLTNGPAANIGQ 198
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 25/176 (14%)
Query: 1251 LQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGID 1310
L V Y + +L +S + P G+ T ++G G GKSTL++ R++ P +G + +
Sbjct: 8 LTVGYGTKR--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKP 65
Query: 1311 ISLIGLHDLRSRLSIIPQDPVMFEG-TVRS----------NLDPLEESTDEQIWE-ALDK 1358
IS++ L RL+++PQ + EG TVR +L + D A+++
Sbjct: 66 ISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQ 125
Query: 1359 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
++ D ++T+ S GQRQ L VL + + +++LDE T +D
Sbjct: 126 TRINHLA-------DRRLTD----LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170
|
Length = 255 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 66/229 (28%), Positives = 97/229 (42%), Gaps = 46/229 (20%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI--LGEVPKISGTLKLCGTKAYVAQS 689
L +I+L + G V + G GSGKS+LL CI L E+ SG L + G K
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT--SGDLIVDGLKV---ND 67
Query: 690 PWIQSGKIE-------------------DNILFGKEMNRERYNAVLDACSLKKDLEILSF 730
P + I +N++FG R +A ++L
Sbjct: 68 PKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKE--EAEKQARELL---- 121
Query: 731 GDQTVIGERG----INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786
+ + ER LSGGQ+QR+ IARAL + LFD+P SA+D L EVL
Sbjct: 122 -AKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALD----PELRHEVL 176
Query: 787 LGLLS----SKTVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDLIN 830
+ T++ VTH++ F A ++ + G+I + G LI
Sbjct: 177 KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225
|
Length = 240 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (203), Expect = 2e-15
Identities = 69/296 (23%), Positives = 138/296 (46%), Gaps = 65/296 (21%)
Query: 1223 IPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPL-VLQGISCTFPGGEKTGIVGR 1281
I + PL +E + KI +++ Y + + + + ++ T G+ VG
Sbjct: 361 IINRKPL-VENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGE 419
Query: 1282 TGSGKSTLIQTLFRIVEPAAGQILI-DGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSN 1340
+G GKST+++ + R+ +P G I+I D ++ I L RS++ ++ QDP++F ++++N
Sbjct: 420 SGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNN 479
Query: 1341 ----------LDPLEESTDEQIWEALD----------KC--QLGD-----------EVRK 1367
L+ L +E ++ + KC L D E+RK
Sbjct: 480 IKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRK 539
Query: 1368 K-------------------------EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402
K ++ V N S GQ+Q + + R +++ K
Sbjct: 540 NYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPK 599
Query: 1403 ILMLDEATASVDTATDNLIQQT---LRQHFSDCTVLTIAHRITSVIDSDLVLLLNH 1455
IL+LDEAT+S+D ++ L+Q+T L+ + + T++ IAHR++++ ++ + +L++
Sbjct: 600 ILILDEATSSLDNKSEYLVQKTINNLKGNENRITII-IAHRLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 2e-15
Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 24/225 (10%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L ++ P G ++G +GSGKSTL++ + + +P +G+I ++G D + + D
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD--R 72
Query: 1322 RLSIIPQDPVMFEG-TVRSN-------LDPLEESTDEQIWEALDKCQLGDEVRKKEGKLD 1373
++ + Q +F+ TVR N + ++ E L+ QL EG D
Sbjct: 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQL-------EGLGD 125
Query: 1374 SKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCT 1433
+ S GQRQ V L R L ++L+LDE ++D ++ LR+ +
Sbjct: 126 RYPNQ----LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH 181
Query: 1434 VLT--IAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSF 1475
V T + H ++ +D ++++++G IE+ +P + ++ ++ F
Sbjct: 182 VTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 43/226 (19%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGT-------KAY 685
LKD++L V G + G G+GKS+L+ CI G E P SG++ + GT K
Sbjct: 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-SGSVLVDGTDLTLLSGKEL 77
Query: 686 VAQSPWI----------QSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
I S + +N+ E+ + ++ LE+L
Sbjct: 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE-----ERVLELLELVGLED 132
Query: 736 IGERGI-NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-------- 786
+ LSGGQKQR+ IARAL + + L D+ SA+D T Q +L
Sbjct: 133 KADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT----QSILALLRDINR 188
Query: 787 -LGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830
LGL T++ +TH++E + D + VM+ G++ + G ++
Sbjct: 189 ELGL----TIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 40/204 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI-SGTLKLCGTK----------- 683
L D+NL + G A+ G GSGKS+LL+ I+G + K SG + L G +
Sbjct: 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLN-IIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 684 ------AYVAQS-PWIQSGKIEDNILFG-------KEMNRERYNAVLDACSLKKDLEILS 729
Y+ Q+ I++ +E+N+ G K+ RE+ L+ L L+
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK--- 129
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789
I E LSGG++QR+ +ARA+ + + L D+P ++D ++LL L
Sbjct: 130 ----QKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKN-RDEVLDLLLEL 180
Query: 790 LSS-KTVIYVTHQVEFLPAADLIL 812
KT+I VTH E AD ++
Sbjct: 181 NDEGKTIIIVTHDPEVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 2e-15
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 32/199 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
+ ++ + G + + G G GKS+L ILG SG + G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG-------------- 74
Query: 696 KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 755
+D KE RER +L+ L ++ + + + LSGGQ+QRI IAR
Sbjct: 75 --KDITKLSKEERRERVLELLEKVGLPEEF-LYRYPHE---------LSGGQRQRIGIAR 122
Query: 756 ALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK---TVIYVTHQVEFLPA-ADLI 811
AL + + + D+P SA+D + + LL L + T ++++H + + +D I
Sbjct: 123 ALALNPKLIVADEPVSALDVSVQAQILN--LLKDLQEELGLTYLFISHDLSVVRYISDRI 180
Query: 812 LVMKDGKITQAGKYNDLIN 830
VM GKI + G ++ +
Sbjct: 181 AVMYLGKIVEIGPTEEVFS 199
|
Length = 268 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 2e-15
Identities = 69/259 (26%), Positives = 113/259 (43%), Gaps = 70/259 (27%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-ISGTLKLCG------------- 681
LK I+L ++ G VA+ G GSGKS+L++ ILG + K SGT ++ G
Sbjct: 24 LKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 682 -------------------TKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLK 722
T A + P + +G ++ R +L
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGL-------ERKQRLLRAQELLQR---- 131
Query: 723 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLF 782
L D+ + + LSGGQ+QR+ IARAL + L D+P A+D+H+G
Sbjct: 132 -----LGLEDR--VEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG---- 180
Query: 783 QEVL--LGLLSSK--TVIYVTHQVEFLPAADLILVMKDGKITQ----------AGKYNDL 828
+EV+ L L + TVI VTH + A+ ++ ++DG+I + AG +
Sbjct: 181 EEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKVNVAGGTEPV 240
Query: 829 INSGTDFMELVGAHEQALL 847
+N+ + + + V +AL
Sbjct: 241 VNTASGWRQFVSGFREALT 259
|
Length = 648 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-15
Identities = 61/219 (27%), Positives = 110/219 (50%), Gaps = 34/219 (15%)
Query: 1241 PSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-- 1298
+ KI + +L Y L+ I+ + T +G +G GKSTL++T R+ E
Sbjct: 9 TAPSKIQVRNLNFYYGKFH--ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELY 66
Query: 1299 P---AAGQILIDG-------IDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL------- 1341
P A G+IL+DG DI+L LR+++ ++ Q P F ++ N+
Sbjct: 67 PEQRAEGEILLDGENILTPKQDIAL-----LRAKVGMVFQKPTPFPMSIYDNIAFGVRLF 121
Query: 1342 DPLEES-TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1400
+ L + DE++ AL K L +EV+ K+ ++G + S GQ+Q +C+ R + R
Sbjct: 122 EKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGGQQQRLCIARGIAIR 174
Query: 1401 SKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439
++L+LDE +++D + I++ + + D TV+ + H
Sbjct: 175 PEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 2e-15
Identities = 65/222 (29%), Positives = 102/222 (45%), Gaps = 30/222 (13%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSL---LSCIL------------- 667
N S+ P L++INL + G + + G GSGKS+L L+ +L
Sbjct: 6 NVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID 65
Query: 668 -GEVPKISGTLKLCGTKAYVAQSPWIQ--SGKIEDNILFGKEMNRERYNAVLDACSLKK- 723
G+ K+ G KL G V Q+P Q +E+++ FG E N L ++K
Sbjct: 66 TGDFSKLQGIRKLVGI---VFQNPETQFVGRTVEEDLAFGPE------NLCLPPIEIRKR 116
Query: 724 -DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLF 782
D + G + LSGGQ Q + +A L + + +FD+ S +D +G +
Sbjct: 117 VDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176
Query: 783 QEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGK 824
+ + KT++Y+TH +E L AD I+VM GKI G+
Sbjct: 177 ERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGE 218
|
Length = 274 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 2e-15
Identities = 48/207 (23%), Positives = 87/207 (42%), Gaps = 28/207 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
++D++ + G + G G+GK++LL I + SG + + G + P
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDT--VRDPSFVRR 75
Query: 696 KI---------------EDNILFGKEMNRERYNAVLDACSLKKDLEILS--FGDQTVIGE 738
KI +N+ + +N L +K + LS +
Sbjct: 76 KIGVLFGERGLYARLTARENLKYFARLNG------LSRKEIKARIAELSKRLQLLEYLDR 129
Query: 739 RGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS-KTVIY 797
R S G KQ++ IARAL D I + D+P S +D T F + + L + + VI+
Sbjct: 130 RVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT-RRKFHDFIKQLKNEGRAVIF 188
Query: 798 VTHQVEFLPA-ADLILVMKDGKITQAG 823
+H ++ + A D ++V+ G++ G
Sbjct: 189 SSHIMQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 3e-15
Identities = 61/203 (30%), Positives = 94/203 (46%), Gaps = 24/203 (11%)
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCG---TKAYVAQSPWIQ 693
+L G A+ G GSGKS+LL+ I G E P+ SG + + G T A A P
Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ-SGRVLINGVDVTAAPPADRP--V 72
Query: 694 SGKIEDNILFGK---EMN-------RERYNAVLDACSLKKDLEILSFGDQTVIGERGINL 743
S ++N LF E N + A D +++ L G + L
Sbjct: 73 SMLFQENNLFAHLTVEQNVGLGLSPGLKLTAE-DRQAIEVALA--RVGLAGLEKRLPGEL 129
Query: 744 SGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK--TVIYVTHQ 801
SGG++QR+ +AR L +D + L D+PF+A+D +++L L + TV+ VTHQ
Sbjct: 130 SGGERQRVALARVLVRDKPVLLLDEPFAALDPAL-RAEMLDLVLDLHAETKMTVLMVTHQ 188
Query: 802 VE-FLPAADLILVMKDGKITQAG 823
E A ++ + +G+I G
Sbjct: 189 PEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 3e-15
Identities = 67/251 (26%), Positives = 117/251 (46%), Gaps = 34/251 (13%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE--PAA-- 1301
I+ ++L+V Y V++G+ P ++G +G GKSTL++T R++E A
Sbjct: 5 IETVNLRVYYGSNH--VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62
Query: 1302 -GQILIDGIDISLIGLH--DLRSRLSIIPQDPVMFE----------GTVRSNLDPLEEST 1348
G++ + G +I + ++R + ++ Q P F G + L ++
Sbjct: 63 EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKEL 122
Query: 1349 DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDE 1408
DE++ AL K L DEV+ ++ + N S GQRQ + + R L + KIL++DE
Sbjct: 123 DERVEWALKKAALWDEVK-------DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175
Query: 1409 ATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEE------- 1460
TA++D I++ L + + T++ + H SD V L G + E
Sbjct: 176 PTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235
Query: 1461 FDNPANLLENK 1471
F+NP + L K
Sbjct: 236 FENPEHELTEK 246
|
Length = 253 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 3e-15
Identities = 64/215 (29%), Positives = 99/215 (46%), Gaps = 36/215 (16%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQSP 690
+ +++L + +G + + G G GK+++L I G E P SG + L G + P
Sbjct: 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-SGRIMLDGQD--ITHVP 82
Query: 691 --------WIQS------GKIEDNILFGKEM----NRERYNAVLDACSLKKDLEILSFGD 732
QS + +N+ FG M E V++A + + LE F
Sbjct: 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQ-LE--EFAQ 139
Query: 733 QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS 792
+ + LSGGQ+QR+ IARA+ + L D+ SA+D + E L L
Sbjct: 140 R-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNE--LKALQR 192
Query: 793 K---TVIYVTH-QVEFLPAADLILVMKDGKITQAG 823
K T ++VTH Q E L +D I+VM+DG+I Q G
Sbjct: 193 KLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227
|
Length = 375 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 3e-15
Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 29/208 (13%)
Query: 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD- 1318
L+ +S P GE + G +G+GKSTL++ ++ P G+IL++G D+S + +
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREI 74
Query: 1319 --LRSRLSIIPQD-PVMFEGTVRSNLD-PLE------ESTDEQIWEALDKCQLGDEVRKK 1368
LR ++ ++ QD ++ + TV N+ PL ++ E LD L + R
Sbjct: 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARAL 134
Query: 1369 EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTL-RQ 1427
+L S G++Q V + R ++ + +L+ DE T ++D I +
Sbjct: 135 PSQL-----------SGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183
Query: 1428 HFSDCTVLTIAHRITSVIDSDLVLLLNH 1455
+ TVL H D +LV + H
Sbjct: 184 NRLGTTVLMATH------DLELVNRMRH 205
|
Length = 223 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 6e-15
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 15/171 (8%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
+ +S T GE I G G+GK+TL++ L ++ P AG++ G I + ++
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA 76
Query: 1322 RLSIIPQDPVMFEGTVRSNL----DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVT 1377
L + Q + E T NL IWEAL + L G+L
Sbjct: 77 LLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQL----- 131
Query: 1378 ENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQH 1428
S GQ++ V L R+ L + + +LDE ++D L+ + H
Sbjct: 132 ------SAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAH 176
|
Length = 209 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 6e-15
Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 28/214 (13%)
Query: 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA---GQILIDGIDISLIGLH 1317
+L +S G+ I+G +GSGK+TL+ + VE GQIL +G
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PD 77
Query: 1318 DLRSRLSIIPQDPVMFEG-TVRSNL---------DPLEESTDEQIWEALDKCQLGDEVRK 1367
+ ++ + QD ++ G TVR L ++ ++ E + L
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG 137
Query: 1368 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ 1427
+ V + S G+R+ V + LL K+L+LDE T+ +D+ T + TL Q
Sbjct: 138 -----GNLV----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQ 188
Query: 1428 HF-SDCTVLTIAHRITSVIDS--DLVLLLNHGLI 1458
+ V+ H+ S + D +LLL+ G I
Sbjct: 189 LARRNRIVILTIHQPRSDLFRLFDRILLLSSGEI 222
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 7e-15
Identities = 70/228 (30%), Positives = 102/228 (44%), Gaps = 47/228 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
LK+INL + G VA+ G G+GKS+LL CI V SG++ L GT
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 684 ----AYVAQS-PWIQSGKIEDNILFG---------------KEMNRERYNAVLDACSLKK 723
+ Q I+ + +N+L G E ++ER A S +
Sbjct: 78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKER------ALSALE 131
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
+ + Q R LSGGQ+QR+ IARAL Q D+ L D+P +++D T S
Sbjct: 132 RVGLADKAYQ-----RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKT-SKQVM 185
Query: 784 EVLLGLLSSK--TVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDL 828
+ L + TVI HQV+ AD I+ +K G+I G ++L
Sbjct: 186 DYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 7e-15
Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 34/234 (14%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA-----AGQILIDGIDISLIG- 1315
+ G+S GE GIVG +GSGKS L + + ++ G+IL DG D+ +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 1316 --LHDLR-SRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGD---EVRKKE 1369
L +R +++I QDP ++L+P+ + +QI E L G E +++
Sbjct: 80 KELRKIRGKEIAMIFQDP-------MTSLNPV-MTIGDQIAEVLRLHGKGLSKKEAKERA 131
Query: 1370 GKLDSKV--TENGENWSM-------GQRQLVCLGRVLLKRSKILMLDEATASVDTATDNL 1420
+L V + G RQ V + L K+L+ DE T ++D
Sbjct: 132 IELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQ 191
Query: 1421 IQQTLR--QHFSDCTVLTIAHRITSVID--SDLVLLLNHGLIEEFDNPANLLEN 1470
I L+ Q ++ I H + V+ +D V ++ G I E + +N
Sbjct: 192 ILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 53/234 (22%), Positives = 105/234 (44%), Gaps = 23/234 (9%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
+++ DL Y ++ ++ +S GE TG++G G+GK+TL++ + ++ P +G++
Sbjct: 2 LEVTDLTKSYGSKVQ-AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 1306 IDGIDISLIGLHDLRSRLSIIP-QDPVMFEGTVRSNL-------DPLEESTDEQIWEALD 1357
IDG+D +R ++ ++ + + T R NL + +I E
Sbjct: 61 IDGVDTVRDPS-FVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSK 119
Query: 1358 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT 1417
+ QL + + ++ G+ S G +Q V + R L+ IL+LDE T+ +D T
Sbjct: 120 RLQLLEYLDRRVGEF-----------STGMKQKVAIARALVHDPSILVLDEPTSGLDIRT 168
Query: 1418 DNLIQQTLRQ-HFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469
++Q V+ +H + V D V++L+ G + + L
Sbjct: 169 RRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 48/204 (23%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTL--FRIVEPAAGQILIDGIDISLIGLHDL 1319
+L+ +S GE T I+G +G+GKSTL+ L R +G++LI+G +
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD---KRSF 80
Query: 1320 RSRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALD---KCQLGDEVRKKEGKLDSK 1375
R + +PQD ++ TVR E L K +
Sbjct: 81 RKIIGYVPQDDILHPTLTVR---------------ETLMFAAKLR--------------- 110
Query: 1376 VTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSD-CTV 1434
S G+R+ V + L+ +L LDE T+ +D+++ + LR+ T+
Sbjct: 111 ------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTI 164
Query: 1435 LTIAHRITSVIDS--DLVLLLNHG 1456
+ H+ +S I D +LLL+ G
Sbjct: 165 ICSIHQPSSEIFELFDKLLLLSQG 188
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 1e-14
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 36/199 (18%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
+L G+S GE I+G G+GKSTL++ L + P +G++ ++G+ ++ +L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 1322 RLSIIPQDPVM-FEGTVRS--------NLDPLEESTDEQIWE-ALDKCQL----GDEVRK 1367
+++PQ+ + F TV+ + E DE+I AL L G + R
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRT 135
Query: 1368 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS------KILMLDEATASVDTATDNLI 1421
G G++Q V L RVL + + L LDE T+++D A +
Sbjct: 136 LSG---------------GEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHT 180
Query: 1422 QQTLRQHFSD-CTVLTIAH 1439
+ RQ + VL + H
Sbjct: 181 LRLARQLAREGGAVLAVLH 199
|
Length = 259 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 1e-14
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 32/220 (14%)
Query: 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI----SLIGLHDLRS 1321
T PG T I GR+GSGK+TLI+ + + P G+I+++G + I L +
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 1322 RLSIIPQDPVMFEG-TVRSNLD--------PLEESTDEQIWEALDKCQLGDEVRKKEGKL 1372
R+ + Q+ +F +VR NL + E++ E L +G + + G+L
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLG---IGHLLGRLPGRL 132
Query: 1373 DSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ---QTLRQHF 1429
S G++Q V +GR LL ++L++DE A++D I + L F
Sbjct: 133 -----------SGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181
Query: 1430 SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468
+L ++H + V+ +D V++L G + A +
Sbjct: 182 -GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-14
Identities = 60/248 (24%), Positives = 114/248 (45%), Gaps = 30/248 (12%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
+++ ++ + + IS GE ++G +G GK+TL++ + +P++G+IL
Sbjct: 6 LEIRNVSKSFGDF--TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNL--------DPLEESTDEQIWEAL 1356
+DG DI+ + + + ++ Q +F TV N+ + ++ EAL
Sbjct: 64 LDGEDIT--DVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEAL 121
Query: 1357 DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA 1416
+ L EG D K + S GQ+Q V L R L+ K+L+LDE +++D
Sbjct: 122 ELVGL-------EGFADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDEPLSALDAK 170
Query: 1417 TDNLIQQTLR--QHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473
+++ L+ Q T + + H + SD + ++N G IE+ P + E ++
Sbjct: 171 LREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPAT 230
Query: 1474 SFSQLVAE 1481
F VA+
Sbjct: 231 RF---VAD 235
|
Length = 352 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 30/229 (13%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322
L +S P GE ++G +GSGK+TL++ + + P +G IL G D + ++ R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATD---VPVQER 74
Query: 1323 -LSIIPQDPVMFEG-TVRSNL-----------DPLEESTDEQIWEALDKCQLGDEVRKKE 1369
+ + Q +F TV N+ P E ++ E L QL +
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQL-------D 127
Query: 1370 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF 1429
D + S GQRQ V L R L K+L+LDE ++D +++ LR+
Sbjct: 128 WLADRYPAQ----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH 183
Query: 1430 SDCTVLTI--AHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSF 1475
+ V T+ H ++ +D V+++N G IE+ P + ++ +S F
Sbjct: 184 DELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 2e-14
Identities = 62/220 (28%), Positives = 105/220 (47%), Gaps = 20/220 (9%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI-SLIGLHDLRS 1321
L+ I+ GE GI+G+ GSGKSTL L ++ P G++L+ GID L +R
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 1322 RLSIIPQDP-VMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKK------EGKLD 1373
+ I+ Q+P F G TV +L E+ C E+RK+ E L+
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFGPENL----------CLPPIEIRKRVDRALAEIGLE 127
Query: 1374 SKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT-DNLIQQTLRQHFSDC 1432
+ + S GQ Q V L +L + L+ DE T+ +D + ++++ + H
Sbjct: 128 KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 1433 TVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKS 1472
T++ I H + + D+D +++++ G I P N+L + S
Sbjct: 188 TIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVS 227
|
Length = 274 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 2e-14
Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 32/230 (13%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL--- 1319
L +S P G+ G++G +G+GKSTLI+ + + P +G +++DG D++ + +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 1320 RSRLSIIPQD-PVMFEGTVRSNLD-PLE------ESTDEQIWEALDKCQLGDEVRKKEGK 1371
R ++ +I Q ++ TV N+ PLE + ++ E L LGD K
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-------K 133
Query: 1372 LDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ--HF 1429
DS + N S GQ+Q V + R L K+L+ DEAT+++D AT I + L++
Sbjct: 134 HDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRR 189
Query: 1430 SDCTVLTIAHRITSV--IDSDLVLLLNHGLIEE------FDNPANLLENK 1471
T+L I H + V I + ++ N LIE+ F +P L K
Sbjct: 190 LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQK 239
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 2e-14
Identities = 63/253 (24%), Positives = 120/253 (47%), Gaps = 37/253 (14%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI---VEPA--AGQI 1304
DL V Y + L +S P + T ++G +G GKST ++ + R+ ++ A G++
Sbjct: 44 DLNVFYGDEQ--ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL 101
Query: 1305 LIDGIDISLIGLHD-------LRSRLSIIPQDPVMFEGTVRSN------LDPLEESTDEQ 1351
G ++ +D LR R+ ++ Q P F ++ N + + DE+
Sbjct: 102 TFRGKNV-----YDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDER 156
Query: 1352 IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATA 1411
+ E+L + L DEV + +LDS +G + S GQ+Q +C+ R + +++++DE +
Sbjct: 157 VEESLRRAALWDEV---KDQLDS----SGLDLSGGQQQRLCIARAIAPDPEVILMDEPAS 209
Query: 1412 SVDTATDNLIQQTLRQHFSDCTVLTIAHRITSV--IDSDLVLLLNHGLIEEFDNPANLLE 1469
++D + I+ + + + TV+ + H + I + L G + EFD+ + E
Sbjct: 210 ALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFE 269
Query: 1470 NKSSSFSQLVAEY 1482
N SQ V +Y
Sbjct: 270 NPE---SQRVEDY 279
|
Length = 285 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 2e-14
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 23/187 (12%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP--WIQ 693
++D++ +V G V + G VG+G++ L + G P SG + L G K +SP I+
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDG-KPVTRRSPRDAIR 74
Query: 694 SGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753
+G I + E +R+R VLD LS + + LSGG +Q++ +
Sbjct: 75 AG-----IAYVPE-DRKREGLVLD----------LSVAENIALSSL---LSGGNQQKVVL 115
Query: 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLIL 812
AR L +D + + D+P VD + +++ + + K V+ ++ +++ L D IL
Sbjct: 116 ARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRIL 175
Query: 813 VMKDGKI 819
VM +G+I
Sbjct: 176 VMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 3e-14
Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 41/228 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--KAY-------- 685
LKDI++K G + G G+GKS+L+ I + G++ + G K
Sbjct: 19 LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRK 78
Query: 686 ---VAQSPWIQSGKIEDNILFG------KEMNRERYNAV--LDACSLKKDLEILSFGDQT 734
V Q P + G ++DNI +G K ++ E Y ++ L+ +D++
Sbjct: 79 IGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVK-------- 130
Query: 735 VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK- 793
NLSGG+ QR+ IAR L + ++ L D+P SA+D T + + +E+++ L +
Sbjct: 131 -------NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-TSTEIIEELIVKLKNKMN 182
Query: 794 -TVIYVTHQVEFLP-AADLILVMKDGKITQAGK-YNDLINSGTDFMEL 838
TVI++TH +E D + G + + K Y+ N + +L
Sbjct: 183 LTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKL 230
|
Length = 241 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 3e-14
Identities = 58/196 (29%), Positives = 86/196 (43%), Gaps = 43/196 (21%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
LKDINL + A+ G G GKS+LL C+ L ++ G + L G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC---SLK--------KD 724
V Q P I DN+ +G ++ + + LD SLK KD
Sbjct: 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIK-DKELDEIVESSLKKAALWDEVKD 141
Query: 725 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQE 784
+ + + LSGGQ+QR+ IARAL ++ L D+P SA+D + +E
Sbjct: 142 R----------LHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP-ISTLKIEE 190
Query: 785 VLLGLLSSKTVIYVTH 800
++ L T++ VTH
Sbjct: 191 LITELKKKYTIVIVTH 206
|
Length = 253 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 3e-14
Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 42/232 (18%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 683
LKD++ V+ G VA+ G GSGKS+L + G + +GT+ + G
Sbjct: 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVR 80
Query: 684 ---AYVAQSPWIQ--SGKIEDNILFGKEMNR-------ERYNAVLDACSLKKDLEILSFG 731
V Q+P Q ++D++ FG E ER + L + + + F
Sbjct: 81 RQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQAL------RQVGMEDFL 134
Query: 732 DQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL----- 786
++ LSGGQKQR+ IA L DI + D+ S +D G +EVL
Sbjct: 135 NR-----EPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP-RGR---REVLETVRQ 185
Query: 787 LGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMEL 838
L TV+ +TH ++ AD ++VM G+I + G ++ SG E+
Sbjct: 186 LKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGHMLQEI 237
|
Length = 279 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 3e-14
Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 24/191 (12%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY---- 685
L ++L + A+ G GSGKS+LL I L I+G++ G Y
Sbjct: 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79
Query: 686 -----------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQT 734
V Q P I +N+++G + + VLD +++K L+ S D+
Sbjct: 80 DTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDE-AVEKSLKGASIWDEV 138
Query: 735 --VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS 792
+ + + LSGGQ+QR+ IAR L I L D+P SA+D + + +E LLGL
Sbjct: 139 KDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI-EETLLGLKDD 197
Query: 793 KTVIYVTHQVE 803
T++ VT ++
Sbjct: 198 YTMLLVTRSMQ 208
|
Length = 252 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-14
Identities = 66/236 (27%), Positives = 102/236 (43%), Gaps = 27/236 (11%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI---GLHD 1318
VL +S + GE G++GR+G GKSTL + L + +PA G + G D+ +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 1319 LRSRLSIIPQD---PVMFEGTVRSNL-DPLEESTD-------EQIWEALDKCQLGDEVRK 1367
R + ++ QD V TVR + +PL T +I E LD L E
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD 145
Query: 1368 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR- 1426
K + S GQ Q + + R L + K+++LDEA +++D +I + LR
Sbjct: 146 KLPR----------QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK 195
Query: 1427 -QHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVA 1480
Q L I H + V V +++ G I E + A LL K + L +
Sbjct: 196 LQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPAGRNLQS 251
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-14
Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 28/219 (12%)
Query: 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS-RLS 1324
+S T G+ I+G GSGKSTL + L ++EP +G+ILI+ + G + RS R+
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL-HFGDYSFRSKRIR 90
Query: 1325 IIPQDP-----------VMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLD 1373
+I QDP + + +R N D E +QI+E L + G L
Sbjct: 91 MIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETL----------RMVGLLP 140
Query: 1374 SKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT-DNLIQQTLR-QHFSD 1431
+ GQ+Q V L R L+ R KI++ DEA AS+D + LI L Q
Sbjct: 141 DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQG 200
Query: 1432 CTVLTIAHRITSVID--SDLVLLLNHGLIEEFDNPANLL 1468
+ + + I +I SD VL+++ G + E + A++L
Sbjct: 201 ISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 3e-14
Identities = 71/220 (32%), Positives = 101/220 (45%), Gaps = 44/220 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTKAYVAQSPWIQS 694
L I+L+V G VA+ G GSGK++LL CI L E P+ +GT+++ A+S Q
Sbjct: 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE-AGTIRVGDITIDTARSLSQQK 77
Query: 695 GKIE----------------------DNILFG----KEMNRERYNAVLDACSLKKDLEIL 728
G I +NI+ G K +E A K L
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-- 135
Query: 729 SFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLG 788
G +T R LSGGQ+QR+ IARAL ++ LFD+P SA+D L EVL
Sbjct: 136 --GKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALD----PELVGEVLNT 186
Query: 789 LLS----SKTVIYVTHQVEFL-PAADLILVMKDGKITQAG 823
+ +T++ VTH++ F AD + M G+I + G
Sbjct: 187 IRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
|
Length = 250 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 4e-14
Identities = 71/242 (29%), Positives = 115/242 (47%), Gaps = 36/242 (14%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI--VEP---AAGQI 1304
DL V Y + L +S F E T ++G +GSGKSTL++++ R+ + P G I
Sbjct: 10 DLSVYYNKKK--ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI 67
Query: 1305 LIDGIDI--SLIGLHDLRSRLSIIPQDPVMFEGTVRSNL----------DPLEESTDEQI 1352
+ +G +I DLR + ++ Q P F ++ N+ D ++ DE +
Sbjct: 68 VYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKD--KQVLDEAV 125
Query: 1353 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATAS 1412
++L + DEV K+ DS + +G GQ+Q VC+ RVL KI++LDE T++
Sbjct: 126 EKSLKGASIWDEV--KDRLHDSALGLSG-----GQQQRVCIARVLATSPKIILLDEPTSA 178
Query: 1413 VDTATDNLIQQTLRQHFSDCTVLTIAHRI--TSVIDSDLVLLLNHGLIE------EFDNP 1464
+D + I++TL D T+L + + S I L+ LIE F NP
Sbjct: 179 LDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP 238
Query: 1465 AN 1466
+
Sbjct: 239 KH 240
|
Length = 252 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 4e-14
Identities = 66/228 (28%), Positives = 104/228 (45%), Gaps = 42/228 (18%)
Query: 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-----L 1319
GIS T G+ G+VG +GSGKSTL L R++ G+I DG DI GL L
Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-QGEIRFDGQDID--GLSRKEMRPL 361
Query: 1320 RSRLSIIPQDP------------VMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRK 1367
R R+ ++ QDP ++ EG D+++ EAL +EV
Sbjct: 362 RRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL------EEVGL 415
Query: 1368 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR- 1426
+ E +S GQRQ + + R L+ + ++++LDE T+++D + + LR
Sbjct: 416 DPATRNRYPHE----FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRD 471
Query: 1427 -QHFSDCTVLTIAHRITSVID--SDLVLLLNHGLIEE-------FDNP 1464
Q + L I+H + +V+ V+++ G I E F NP
Sbjct: 472 LQQKHGLSYLFISHDL-AVVRALCHRVIVMRDGKIVEQGPTEAVFANP 518
|
Length = 534 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 5e-14
Identities = 52/199 (26%), Positives = 100/199 (50%), Gaps = 14/199 (7%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
+L+ +S + P G+ T ++G TGSGKSTL+Q+L E + G++ + RS
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RS 722
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1381
++ +PQ + TVR N+ +E ++ +A+ QL ++ + G L++++ E G
Sbjct: 723 -IAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGV 781
Query: 1382 NWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI-QQTLRQHFSDCTVLTIAHR 1440
N S GQ+ V L R + + +LD+ +++D + ++ + T + H+
Sbjct: 782 NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQ 841
Query: 1441 ITSVIDSDLVLLLNHGLIE 1459
+ V +D V+ L G +E
Sbjct: 842 VHVVPRADYVVALGDGRVE 860
|
Length = 1560 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 6e-14
Identities = 39/130 (30%), Positives = 53/130 (40%), Gaps = 29/130 (22%)
Query: 660 SSLLSCILGEVPKISGTLKLCGTK--------------AYVAQSPWI-QSGKIEDNILFG 704
S+LL I G + SGT+ L G V Q P + + +N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 705 ---KEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761
KE R L+ L L+ E LSGGQKQR+ IARAL +
Sbjct: 61 LRDKEA-DARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKP 109
Query: 762 DIYLFDDPFS 771
+ L D+P +
Sbjct: 110 KLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 6e-14
Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 55/215 (25%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322
+ G+S + GE G+VG +G GKSTL + + + EP +G+IL +G DI+ +
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL-------- 80
Query: 1323 LSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGEN 1382
+E E++ E L+K L +E + ++
Sbjct: 81 ---------------------SKEERRERVLELLEKVGLPEEFL---YRYPHEL------ 110
Query: 1383 WSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD----NLIQQTLRQHFSDCTVLTIA 1438
S GQRQ + + R L K+++ DE +++D + NL++ L++ T L I+
Sbjct: 111 -SGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKD-LQEELG-LTYLFIS 167
Query: 1439 HRITSVID--SDLVLLLNHGLIEE-------FDNP 1464
H + SV+ SD + ++ G I E F NP
Sbjct: 168 HDL-SVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201
|
Length = 268 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 7e-14
Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 23/192 (11%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY-- 685
N LK INL + A+ G G GKS+LL C+ L E KI+G L + G Y
Sbjct: 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGN 75
Query: 686 ------------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQ 733
V Q P I +N+ +G + VLD +++ L + D+
Sbjct: 76 IDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEV-VERSLRGAALWDE 134
Query: 734 --TVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS 791
+ LSGGQ+QR+ IAR + + D+ L D+P SA+D +H +E++ L
Sbjct: 135 VKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDP-IATHKIEELMEELKK 193
Query: 792 SKTVIYVTHQVE 803
+ T++ VTH ++
Sbjct: 194 NYTIVIVTHSMQ 205
|
Length = 249 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 9e-14
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
+ G+S T GE + G GSGK+TL++ L + P AG++L++G + R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380
L + + +V NL + +DEQ+ EAL + L + +L
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQL-------- 126
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQH 1428
S GQ++ V L R+LL + +LDE T ++D A + + H
Sbjct: 127 ---SAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH 171
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 9e-14
Identities = 60/249 (24%), Positives = 108/249 (43%), Gaps = 25/249 (10%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE--PAA- 1301
KID D+ Y L+GIS +G +G GKST ++ R+ + PA
Sbjct: 3 KIDARDVNFWYGDFH--ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 1302 --GQILIDGIDISLIGLH--DLRSRLSIIPQDPVMFEGTV--------RSNLDPLEESTD 1349
G+I IDG +I G+ +LR + ++ Q P F ++ R N
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR 120
Query: 1350 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEA 1409
+++ E L L DEV+ K+ E+ S GQ+Q +C+ R + +L++DE
Sbjct: 121 QRVEETLKGAALWDEVK-------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEP 173
Query: 1410 TASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468
+++D + +++ + + D T++ + H + SD G + E+D+ +
Sbjct: 174 ASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233
Query: 1469 ENKSSSFSQ 1477
N +Q
Sbjct: 234 TNPEKEATQ 242
|
Length = 250 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 1e-13
Identities = 60/237 (25%), Positives = 102/237 (43%), Gaps = 54/237 (22%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
+L +S T GE I+G G+GKSTL++ L + P +G++ ++G ++ +L
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELAR 76
Query: 1322 RLSIIPQDPVM-FEGTVRS----NLDPLEESTDEQ---IWEALDKCQLGDEVRKKEGKLD 1373
R +++PQ + F TV P S E + AL + L + +L
Sbjct: 77 RRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQL- 135
Query: 1374 SKVTENGENWSMGQRQLVCLGRVLLKRS------KILMLDEATASVDTATDNLIQQTLRQ 1427
S G++Q V L RVL + + L+LDE T+++D + Q
Sbjct: 136 ----------SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALD------LAH---Q 176
Query: 1428 HFSDCTVLTIAHRIT-----SVI----D-------SDLVLLLNHGLIEEFDNPANLL 1468
H VL +A ++ +VI D +D ++LL+ G + PA +L
Sbjct: 177 H----HVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 1e-13
Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
V+ +S GE G++G G+GK+T + +V P +G+IL+D DI+ + +H R+
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH-KRA 77
Query: 1322 RLSI--IPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKC---QLGDEVRKKEGKLDSK 1375
RL I +PQ+ +F TV N+ + E ++ + +A K L +E + DSK
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR-DSK 136
Query: 1376 VTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
+ S G+R+ V + R L K ++LDE A VD
Sbjct: 137 ----AYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171
|
Length = 243 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 1e-13
Identities = 53/214 (24%), Positives = 99/214 (46%), Gaps = 43/214 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW--IQ 693
D++L V G A+ G G+GKS+L+ + G SG +++ G + + SP I+
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIK-SPRDAIR 78
Query: 694 SG--------------KIEDNILFGKEMN----------RERYNAVLDACSLKKDLEILS 729
G + +NI+ G E + R R + + L D +
Sbjct: 79 LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD--- 135
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789
+ + LS G++QR++I +ALY+ + + + D+P + + LF+ +L
Sbjct: 136 ----AKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE--ILRR 185
Query: 790 L--SSKTVIYVTHQV-EFLPAADLILVMKDGKIT 820
L KT+I++TH++ E + AD + V++ GK+
Sbjct: 186 LAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 1e-13
Identities = 52/208 (25%), Positives = 103/208 (49%), Gaps = 20/208 (9%)
Query: 1276 TGIVGRTGSGKSTLIQTLFRIVEPAA---GQILIDGIDISLIGLHDLRSRLSIIPQDPVM 1332
T ++G +G GKST ++ R+ + A G + I+G D+ + LR + ++ Q P +
Sbjct: 31 TALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNV 90
Query: 1333 FEGTVRSN------LDPLEESTDEQ---IWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1383
F ++ N L + ++ DE+ + + L K L +EV+ K+ +N
Sbjct: 91 FVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALAL 143
Query: 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITS 1443
S GQ+Q +C+ R L + K+L+LDE T+++D + +I++ L++ + +++ + H +
Sbjct: 144 SGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQ 203
Query: 1444 VID-SDLVLLLNHGLIEEFDNPANLLEN 1470
+D + G + EF EN
Sbjct: 204 GKRVADYTAFFHLGELIEFGESKEFFEN 231
|
Length = 246 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 1e-13
Identities = 62/215 (28%), Positives = 99/215 (46%), Gaps = 24/215 (11%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309
+L R+ Q + IS T P G++G G+GKSTL++ + I+ P +G+I+ DG
Sbjct: 5 NLSKRFGKQT--AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH 62
Query: 1310 DISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD---PLEESTDEQIWEALDKCQLGDEVR 1366
+ DL S+I P+ T R NL L D +I E L+ L + +
Sbjct: 63 PWT---RKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK 119
Query: 1367 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR 1426
KK + +S+G +Q + + LL K+L+LDE T +D + Q LR
Sbjct: 120 KKAKQ-----------FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP----IGIQELR 164
Query: 1427 QHFSDCTVLTIAHRITSVIDSDLVLLLNH-GLIEE 1460
+ I ++S I S++ L +H G+I E
Sbjct: 165 ELIRSFPEQGITVILSSHILSEVQQLADHIGIISE 199
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 2e-13
Identities = 51/202 (25%), Positives = 101/202 (50%), Gaps = 9/202 (4%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322
L I+ P G+ T IVG+ G GKS+L+ + ++ G++ + S RSR
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 1323 ----LSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEAL-DKCQLGDEVRKKEGKLDSKVT 1377
++ Q P + TV N+ ++Q ++A+ D C L ++ +++
Sbjct: 77 NRYSVAYAAQKPWLLNATVEENI-TFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIG 135
Query: 1378 ENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT-ATDNLIQQTLRQHFSD--CTV 1434
E G N S GQRQ +C+ R L + + I+ LD+ +++D +D+L+Q+ + + D T+
Sbjct: 136 ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTL 195
Query: 1435 LTIAHRITSVIDSDLVLLLNHG 1456
+ + H++ + +D ++ + G
Sbjct: 196 VLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 27/218 (12%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL---GEVP--KISGTLKLCGTKAY----- 685
+K++ +K+F A+ G G GK++LL I +P ++ G + G Y
Sbjct: 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLD 78
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
V Q P I DN+ FG ++ + LD +++ L+ + D+
Sbjct: 79 VTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRI-VEESLKKAALWDEVK 137
Query: 736 --IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793
+ + G LSGGQ+QR+ IARAL + ++ L D+P SA+D + E LL LS
Sbjct: 138 SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRI--EKLLEELSEN 195
Query: 794 -TVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDLI 829
T++ VTH + + + AD I M G++ + G +++
Sbjct: 196 YTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233
|
Length = 250 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 2e-13
Identities = 64/244 (26%), Positives = 106/244 (43%), Gaps = 48/244 (19%)
Query: 625 FSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK- 683
F + TL D++ V G +++ G GSGKS+ + I G + SG + + G
Sbjct: 12 FKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLL 71
Query: 684 ------------AYVAQSPWIQ--SGKIEDNILFG--------KEMNRERYNAVLDACSL 721
V Q+P Q +ED++ FG +EM +ER N L+ +
Sbjct: 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEM-KERVNEALELVGM 130
Query: 722 K--KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGS 779
+ K+ E LSGGQKQR+ IA A+ I + D+ S +D
Sbjct: 131 QDFKERE-------------PARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRL 177
Query: 780 HLFQEVL-----LGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTD 834
L + + + TVI +TH ++ + +D +LVMK+G++ +L + G D
Sbjct: 178 ELIKTIKGIRDDYQM----TVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGND 233
Query: 835 FMEL 838
++L
Sbjct: 234 LLQL 237
|
Length = 279 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 27/233 (11%)
Query: 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1320
+ L G+S GE ++G +G GK+TL++ + P +G+IL+DG DI+ + H +
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--K 71
Query: 1321 SRLSIIPQDPVMFEG-TVRSNLD-PL------EESTDEQIWEALDKCQLGDEVRKKEGKL 1372
++ + Q+ +F TV N+ L + E++ EALD QL +K +L
Sbjct: 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQL 131
Query: 1373 DSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR--QHFS 1430
S GQ+Q V + R L+ K+L+LDE ++D +Q L+ Q
Sbjct: 132 -----------SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL 180
Query: 1431 DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEY 1482
T + + H + SD + ++N G I++ P + E ++ F VA++
Sbjct: 181 GITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRF---VADF 230
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 36/203 (17%)
Query: 626 SWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTK 683
S S LK+++ K G A+ G G+GKS+LL+ + G +SG + + G
Sbjct: 15 SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP 74
Query: 684 AYVAQSPWIQSGKI-EDNILFGKEMNRE--RYNAVLDACSLKKDLEILSFGDQTVIGERG 740
+S G + +D+IL RE + A L RG
Sbjct: 75 LD-KRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL----------------------RG 111
Query: 741 INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS--KTVIYV 798
+ SGG+++R+ IA L + + D+P S +D+ + + LL L+ +T+I
Sbjct: 112 L--SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS--LLRRLADTGRTIICS 167
Query: 799 THQV--EFLPAADLILVMKDGKI 819
HQ E D +L++ G++
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 28/191 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
L D+++ + A+ G G GKS+ L CI L + ++ G L G Y
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC---SLKKDLEILSFGD 732
V Q P I DN+ +G ++ + Y+ +D SL++ D
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKI--QGYDGDIDERVEESLRRAALWDEVKD 172
Query: 733 QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS 792
Q + G++LSGGQ+QR+ IARA+ D ++ L D+P SA+D S + ++++ L
Sbjct: 173 Q--LDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKI-EDLIEELAEE 229
Query: 793 KTVIYVTHQVE 803
TV+ VTH ++
Sbjct: 230 YTVVIVTHNMQ 240
|
Length = 285 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 2e-13
Identities = 52/205 (25%), Positives = 102/205 (49%), Gaps = 19/205 (9%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-LRS 1321
+S + GE ++G G+GKSTL++ LF + +P +G+I +DG ++ + D +R
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79
Query: 1322 RLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKK------EGKLDS 1374
+ ++ Q ++ TV N+ E + +D+ Q +++ D+
Sbjct: 80 GIGMVHQHFMLVPTLTVAENIILGLEPS---KGGLIDRRQARARIKELSERYGLPVDPDA 136
Query: 1375 KVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASV-DTATDNLIQQTLRQ-HFSDC 1432
KV + S+G++Q V + + L + +++L+LDE TA + D L + LR+
Sbjct: 137 KV----ADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELF-EILRRLAAEGK 191
Query: 1433 TVLTIAHRITSVID-SDLVLLLNHG 1456
T++ I H++ V+ +D V +L G
Sbjct: 192 TIIFITHKLKEVMAIADRVTVLRRG 216
|
Length = 501 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 57/191 (29%), Positives = 84/191 (43%), Gaps = 32/191 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
LK INL + A+ G G GKS+ L + L KI G + L G Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC---SLKKDL---EILS 729
V Q P I DN+ +G + + LD SLK E+
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD 138
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789
++ +G LSGGQ+QR+ IARAL + ++ L D+P SA+D + + +E++ L
Sbjct: 139 RLKKSALG-----LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKI-EELIQEL 192
Query: 790 LSSKTVIYVTH 800
T++ VTH
Sbjct: 193 KKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 67/206 (32%), Positives = 97/206 (47%), Gaps = 35/206 (16%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQS-- 689
L ++L + G VAV G G GKS+LL + G +G L L GT A +A++
Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGT-APLAEARE 81
Query: 690 ------------PWIQSGKIEDNILFGKEMN-RERYNAVLDACSLKKDLEILSFGDQTVI 736
PW K+ DN+ G + R+ L A L D+
Sbjct: 82 DTRLMFQDARLLPW---KKVIDNVGLGLKGQWRDAALQALAAVGL---------ADRA-- 127
Query: 737 GERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK--T 794
E LSGGQKQR+ +ARAL + L D+P A+DA T + Q+++ L T
Sbjct: 128 NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM-QDLIESLWQQHGFT 186
Query: 795 VIYVTHQV-EFLPAADLILVMKDGKI 819
V+ VTH V E + AD +L++++GKI
Sbjct: 187 VLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 30/224 (13%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTKAYVAQSPWIQ 693
L DI L G + + G G+GKSSLL + L E+P+ SGTL + G +++P +
Sbjct: 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTPSDK 75
Query: 694 SGK--------------------IEDNILFG--KEMNRERYNAVLDACSLKKDLEILSFG 731
+ + +++N++ + + + A+ A L K L + +
Sbjct: 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA 135
Query: 732 DQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS 791
D+ ++LSGGQ+QR+ IARAL + + LFD+P +A+D + + + +
Sbjct: 136 DRY-----PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAET 190
Query: 792 SKTVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDLINSGTD 834
T + VTH+VE A ++ M++G I + G + T+
Sbjct: 191 GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTE 234
|
Length = 242 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 61/236 (25%), Positives = 100/236 (42%), Gaps = 30/236 (12%)
Query: 613 SSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----L 667
+ E L + N + L DI + + A+ G G GKS+LL C L
Sbjct: 2 TMEIILSTKNLNLWY---GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL 58
Query: 668 GEVPKISGTLKLCGTK---------------AYVAQSPWIQSGKIEDNILFGKEMNRERY 712
+I+G + G V Q P I +N+ +G ++ E+
Sbjct: 59 IPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKN 118
Query: 713 NAVLDAC---SLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDP 769
LD SLK D+ + + ++LSGGQ+QR+ IAR L + ++ L D+P
Sbjct: 119 KKTLDTIVEKSLKGAALWDEVKDR--LHDSALSLSGGQQQRLCIARTLAVNPEVILMDEP 176
Query: 770 FSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGK 824
SA+D + + ++++ L TVI VTH ++ +D M GK+ + K
Sbjct: 177 CSALDPIATAKI-EDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDK 231
|
Length = 253 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 2e-13
Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 22/163 (13%)
Query: 672 KISGTLKLCGTKAYVAQSPWIQSGK--IEDNILFG-------KEMNRERYNAVLDACSLK 722
KI +L + V Q P Q K IE +I+FG K ++ L+ L
Sbjct: 107 KIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD 166
Query: 723 KD-LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL 781
LE FG LSGGQK+R+ IA L +I +FD+P + +D +
Sbjct: 167 DSYLERSPFG-----------LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEM 215
Query: 782 FQEVLLGLLSSKTVIYVTHQVE-FLPAADLILVMKDGKITQAG 823
Q +L ++KTV +TH +E L AD ++VM GKI + G
Sbjct: 216 MQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 24/214 (11%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE--PAA---GQILIDGIDISLIGLH 1317
L+GI F E T ++G +G GKST ++TL R+ + P G + + G +I
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 1318 --DLRSRLSIIPQDPVMFEGTVRSN------LDPLEEST--DEQIWEALDKCQLGDEVRK 1367
LR ++ ++ Q P F ++ N L +++ DE + +L + + DEV+
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK- 139
Query: 1368 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ 1427
+ E+ + S GQ+Q VC+ RVL + +++LDE T+++D + I+ L +
Sbjct: 140 ------DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLE 193
Query: 1428 HFSDCTVLTIAHRI--TSVIDSDLVLLLNHGLIE 1459
T++ + H + S I L LIE
Sbjct: 194 LRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 36/210 (17%)
Query: 1251 LQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI-----VEPAAGQIL 1305
L Y L IS F + T ++G +G GKST ++ L R+ G+IL
Sbjct: 12 LSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL 69
Query: 1306 IDGIDI--SLIGLHDLRSRLSIIPQDPVMFEGTVRSNL----------DPLEESTDEQIW 1353
+DG +I + + +LR R+ ++ Q P F ++ N+ D + E++
Sbjct: 70 LDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKD--KAYLAERVE 127
Query: 1354 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASV 1413
+L L DEV+ ++ E+ S GQ+Q +C+ R L ++L++DE +++
Sbjct: 128 RSLRHAALWDEVK-------DRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASAL 180
Query: 1414 D-TAT---DNLIQQTLRQHFSDCTVLTIAH 1439
D AT + LI + L+ + T++ + H
Sbjct: 181 DPIATQKIEELIHE-LKARY---TIIIVTH 206
|
Length = 253 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 3e-13
Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 43/233 (18%)
Query: 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LHDLRS-RLSIIPQ 1328
GE I+G +GSGKSTL++ + R++EP +G++LIDG DI+ + L +LR ++S++ Q
Sbjct: 50 GEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQ 109
Query: 1329 DPVMF-EGTVRSNLD-PLE------ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380
+ TV N+ LE +E+ EAL+ L K +L
Sbjct: 110 SFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDEL-------- 161
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHR 1440
S G +Q V L R L IL++DEA +A D LI++ ++ L +
Sbjct: 162 ---SGGMQQRVGLARALAVDPDILLMDEAF----SALDPLIRREMQDELLR---LQAELQ 211
Query: 1441 ITSV-IDSDL---------VLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYT 1483
T V I DL + ++ G + + P +L N ++ + V E+
Sbjct: 212 KTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDY---VREFF 261
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 3e-13
Identities = 72/285 (25%), Positives = 129/285 (45%), Gaps = 48/285 (16%)
Query: 1232 EESRPNDSWPSH-----GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGK 1286
E++R D W + K+ + DL V Y L+G+S P T ++G +G GK
Sbjct: 29 EQTR--DEWTDYEFDGDAKLSVEDLDVYYGDDH--ALKGVSMDIPEKSVTALIGPSGCGK 84
Query: 1287 STLIQTLFRI---VEPA--AGQILIDGIDISLIG--LHDLRSRLSIIPQDPVMFEGTVRS 1339
ST ++ L R+ ++ A G + +DG DI G L +LR R+ ++ Q P F ++R
Sbjct: 85 STFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRE 144
Query: 1340 NLD--PL------------------EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1379
N+ P +++ DE + +L + L DEV + +N
Sbjct: 145 NISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLD-------DN 197
Query: 1380 GENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439
S GQ+Q +C+ R L +++++DE +++D + I+ + + + TV+ + H
Sbjct: 198 ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTH 257
Query: 1440 RITSV--IDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEY 1482
+ I + L G + E+D+ + EN SQ V +Y
Sbjct: 258 NMQQAARISDQTAVFLTGGELVEYDDTDKIFENPE---SQRVEDY 299
|
Length = 305 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 3e-13
Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 60/189 (31%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 692
LKDI+L + G R+ + G G+GKS+LL I GE+ G +
Sbjct: 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW------------- 59
Query: 693 QSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752
++I F +Q LSGG+K R+
Sbjct: 60 -----------------------------GSTVKIGYF-EQ---------LSGGEKMRLA 80
Query: 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS--KTVIYVTHQVEFLPA-AD 809
+A+ L ++ ++ L D+P + +D + E L L TVI V+H FL A
Sbjct: 81 LAKLLLENPNLLLLDEPTNHLDLES-----IEALEEALKEYPGTVILVSHDRYFLDQVAT 135
Query: 810 LILVMKDGK 818
I+ ++DGK
Sbjct: 136 KIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (173), Expect = 3e-13
Identities = 53/195 (27%), Positives = 100/195 (51%), Gaps = 22/195 (11%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR---IVEPA--AGQILIDGIDISLIGL 1316
VL+ I+ FP + T I+G +G GKSTL++ L R IV A G +L+D +I L
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 1317 H--DLRSRLSIIPQDPVMFEGTVRSNLD--------PLEESTDEQIWEALDKCQLGDEVR 1366
+LR R+ ++ Q P F ++ N+ + DE + ++L + L DEV+
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK 138
Query: 1367 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR 1426
+ ++G S GQ+Q +C+ RVL +++++DE +++D + I++ ++
Sbjct: 139 -------DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQ 191
Query: 1427 QHFSDCTVLTIAHRI 1441
+ + T+ + H +
Sbjct: 192 ELKQNYTIAIVTHNM 206
|
Length = 251 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 4e-13
Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 10/210 (4%)
Query: 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL----RSRLSIIPQ 1328
GE I+G +GSGKST ++ L R++EP AGQI IDG +I +L R ++ ++ Q
Sbjct: 19 GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78
Query: 1329 DPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388
+F + L + W ++ + E+ K G L+ + S G +
Sbjct: 79 QFALFPH--MTILQNTSLGPELLGWPEQERKEKALELLKLVG-LEEYEHRYPDELSGGMQ 135
Query: 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR--QHFSDCTVLTIAHRITSVID 1446
Q V L R L IL++DEA +++D + +Q L+ Q T++ I H + I
Sbjct: 136 QRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIR 195
Query: 1447 -SDLVLLLNHGLIEEFDNPANLLENKSSSF 1475
D ++++ G I + P +L N ++ +
Sbjct: 196 IGDRIVIMKAGEIVQVGTPDEILRNPANEY 225
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 5e-13
Identities = 64/250 (25%), Positives = 100/250 (40%), Gaps = 23/250 (9%)
Query: 577 DVISMIIQTKVSLQRIASF-FCLDDLQPDLVEKQPSGSSETALDIVDG-----NFSWDIS 630
D I + +L R+A F L+ Q D + +G D D N S
Sbjct: 344 DNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTP 403
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA--YVAQ 688
L ++N +V G R+ + G G+GK+SLL + G P SG + + A ++ Q
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQ 463
Query: 689 SPWIQSGKIEDNILF---GKEMNRERYNAVLDACSLKK---DLEILSFGDQTVIGERGIN 742
P++ G + + + + + + AVL L L+ D+
Sbjct: 464 RPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRV-------- 515
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQV 802
LSGG++QR+ AR L D+ SA+D T L+Q +L L TVI V H+
Sbjct: 516 LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ-LLKEELPDATVISVGHRP 574
Query: 803 EFLPAADLIL 812
L
Sbjct: 575 TLWNFHSRQL 584
|
Length = 604 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 5e-13
Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 22/216 (10%)
Query: 1248 LLDL-QVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI 1306
LL L V Y +L IS + GE I G +G GKSTL++ + ++ P +G +L
Sbjct: 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLF 66
Query: 1307 DGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD-PLE---ESTDEQIWEA-LDKCQL 1361
+G DIS + R ++S Q P +F TV NL P + + D I+ L++ L
Sbjct: 67 EGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFAL 126
Query: 1362 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD----TAT 1417
D + L + E S G++Q + L R L K+L+LDE T+++D
Sbjct: 127 PDTI------LTKNIAE----LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV 176
Query: 1418 DNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLL 1453
+ +I + +R+ + VL + H + +D V+ L
Sbjct: 177 NEIIHRYVREQ--NIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 5e-13
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 20/175 (11%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
V+ G+S + GE G++G G+GK+T + +V+P +G+IL+DG DI+ + +H R+
Sbjct: 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK-RA 73
Query: 1322 RLSII--PQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKC-QLGDE-----VRKKEGKL 1372
RL I PQ+ +F TV N+ + E E +K +L +E +RK
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKS---- 129
Query: 1373 DSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ 1427
+ S G+R+ V + R L K L+LDE A VD IQ+ ++
Sbjct: 130 ------KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 5e-13
Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 39/221 (17%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
+ +S GE G++G G+GK+TL + +P++G ++ G DI+ + H +
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIA 77
Query: 1322 RLSI-----IPQ--------DPVMFEGTVRSNLDPL---------EESTDEQIWEALDKC 1359
RL I I + + V R L L E E+ E L+
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 1360 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASV-DTATD 1418
LG+ N S GQ++ + + R L + K+L+LDE A + T+
Sbjct: 138 GLGE-----------LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETE 186
Query: 1419 NLIQ--QTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHG 1456
L + + LR T+L I H + V+ +D +++LN+G
Sbjct: 187 ELAELIRELRDRG-GVTILLIEHDMKLVMGLADRIVVLNYG 226
|
Length = 250 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (173), Expect = 5e-13
Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 41/224 (18%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG-----QILIDGIDI-SLIG 1315
VL +S FP T ++G TGSGK+T ++TL R+ + +G +L+ G I +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 1316 LHDLRSRLSIIPQDPVMFEGTVRSN---------LDPLEES--------TDEQIWEALDK 1358
+ + R R+ ++ Q P F ++ N L P +E T+ +W+A+ K
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-K 154
Query: 1359 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD 1418
+L D + G GQ+QL+CL R L ++L+LDE T+++D T
Sbjct: 155 DRLSDSPFRLSG---------------GQQQLLCLARTLAVNPEVLLLDEPTSALDPTTT 199
Query: 1419 NLIQQTLRQHFSDCTVLTIAHRITSV--IDSDLVLLLNHGLIEE 1460
I++ +R TV+ + H + I L + L+EE
Sbjct: 200 EKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEE 243
|
Length = 276 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 5e-13
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 18/172 (10%)
Query: 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1320
++ G+S T GE + G GSGK+TL++ + ++ PAAG I +DG D I D+
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD---IDDPDVA 72
Query: 1321 SRLSII-PQDPVMFEGTVRSNLD---PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKV 1376
+ ++ + TV NL+ + I AL+ L G L
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYL---- 128
Query: 1377 TENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQH 1428
S GQ++ V L R+L+ I +LDE TA++D A L + +R H
Sbjct: 129 -------SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAH 173
|
Length = 207 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 6e-13
Identities = 60/229 (26%), Positives = 96/229 (41%), Gaps = 47/229 (20%)
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY 685
N +K ++LK+ A+ G G GKS+LL L E ++ G ++L G Y
Sbjct: 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIY 74
Query: 686 VAQSPWIQSGK----------------IEDNILFGKEMNR---------ERYNAVLDACS 720
I+ + I DN+ G ++N ER L +
Sbjct: 75 SPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAA 134
Query: 721 LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSH 780
L ++ + + + NLSGGQ+QR+ IARAL I L D+P + +D G+
Sbjct: 135 LWDEV-------KDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDP-VGTA 186
Query: 781 LFQEVLLGLLSSKTVIYVTHQVEFLPA-----ADLILVMKDGKITQAGK 824
+E+L L T++ VTH PA +D + + GK+ + G
Sbjct: 187 KIEELLFELKKEYTIVLVTHS----PAQAARVSDYVAFLYLGKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 6e-13
Identities = 65/239 (27%), Positives = 111/239 (46%), Gaps = 40/239 (16%)
Query: 1259 MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD 1318
+ L ++ S GE I+G +GSGKST+++ L R++EP GQ+LIDG+DI+ I +
Sbjct: 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAE 99
Query: 1319 LRS----RLSIIPQD-PVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEV------RK 1367
LR +++++ Q +M TV LD G E+ +
Sbjct: 100 LREVRRKKIAMVFQSFALMPHMTV------------------LDNTAFGMELAGINAEER 141
Query: 1368 KEGKLDSKVTENGENW--------SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN 1419
+E LD+ EN+ S G RQ V L R L IL++DEA +++D
Sbjct: 142 REKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT 201
Query: 1420 LIQQTL--RQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSF 1475
+Q L Q T++ I+H + + D + ++ +G + + P +L N ++ +
Sbjct: 202 EMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260
|
Length = 400 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 6e-13
Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 22/215 (10%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322
+ G++ GE G +G G+GK+T I+ L ++ P +G + G D+ + +R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV-VREPRKVRRS 67
Query: 1323 LSIIPQDPVMFEG-TVRSNLDPL-------EESTDEQIWEALDKCQLGDEVRKKEGKLDS 1374
+ I+PQ + E T R NL+ + ++ +E+ E L+ +LG+ + G
Sbjct: 68 IGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG---- 123
Query: 1375 KVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ-HFSDCT 1433
+S G R+ + + L+ + +L LDE T +D T I +R T
Sbjct: 124 -------TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVT 176
Query: 1434 VLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANL 1467
+L H + D + +++HG I P L
Sbjct: 177 ILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 7e-13
Identities = 58/189 (30%), Positives = 90/189 (47%), Gaps = 31/189 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----------AY 685
L+D + V G A+ G GSGKS+L ++G V SG + + G AY
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82
Query: 686 VAQSP---WIQSGKIEDNILFGK-------EMNRERYNAVLDACSLKKDLEILSFGDQTV 735
V QS W +ED ++ G+ ++R ++ A + D+ + F +
Sbjct: 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDM--VEFRHRQ- 139
Query: 736 IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL--SSK 793
IGE LSGGQK+R+ +ARA+ Q + L D+PF+ VD T + + LL L K
Sbjct: 140 IGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIIS--LLRELRDEGK 193
Query: 794 TVIYVTHQV 802
T++ TH +
Sbjct: 194 TMLVSTHNL 202
|
Length = 272 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 7e-13
Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 34/164 (20%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
+L+G+S P GE T ++GR G GK+TL++TL ++ +G I +DG DI+ + H+ R+
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE-RA 73
Query: 1322 RLSI--IPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGK------- 1371
R I +PQ +F TV NL G + +
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENL------------------LTGLAALPRRSRKIPDEIY 115
Query: 1372 -----LDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEAT 1410
L + G + S GQ+Q + + R L+ R K+L+LDE T
Sbjct: 116 ELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 67/244 (27%), Positives = 122/244 (50%), Gaps = 27/244 (11%)
Query: 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR---IVEPA 1300
GKI + DL + Y L+ I+ + T ++G +G GKST ++TL R ++
Sbjct: 2 GKISVKDLDLFYGDFQ--ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSV 59
Query: 1301 --AGQILIDGIDI--SLIGLHDLRSRLSIIPQDPVMFEGTVRSNL--DPL------EEST 1348
G++L+DG DI S I ++ LR R+ ++ Q P F ++ N+ P ++
Sbjct: 60 KIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKL 119
Query: 1349 DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDE 1408
DE + ++L L DEV+ ++ ++ S GQ+Q +C+ R L ++L++DE
Sbjct: 120 DEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDE 172
Query: 1409 ATASVDTATDNLIQQTLRQHFSDCTVLTIAHRI--TSVIDSDLVLLLNHGLIEEFDNPAN 1466
T+++D + I++ +++ D T++ + H + S I LN G I EF + +
Sbjct: 173 PTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLN-GEIVEFGDTVD 231
Query: 1467 LLEN 1470
L N
Sbjct: 232 LFTN 235
|
Length = 250 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 60/212 (28%), Positives = 88/212 (41%), Gaps = 49/212 (23%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI--- 692
LKD++ +V G R+ + G G+GKS+LL + G P SGT+ + G + +
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS------SLLGL 91
Query: 693 -------QSGKIEDNILF--------GKEMNRERYNAVLDACSLKKDLEILSFGDQTVIG 737
+G +NI KE+ E+ + +++ L F D V
Sbjct: 92 GGGFNPELTG--RENIYLNGRLLGLSRKEI-DEKIDEIIEFSELGD------FIDLPV-- 140
Query: 738 ERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQE----VLLGLLS-S 792
S G K R+ A A + DI L D+ + DA FQE L LL
Sbjct: 141 ---KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA-----FQEKCQRRLRELLKQG 192
Query: 793 KTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823
KTVI V+H + D LV++ GKI G
Sbjct: 193 KTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 1e-12
Identities = 56/232 (24%), Positives = 109/232 (46%), Gaps = 35/232 (15%)
Query: 1274 EKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISLIGLHD--LRSRLSII 1326
E T +G +G GKST ++ R+ + G++ IDGID+ + + LR+++ ++
Sbjct: 32 EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMV 91
Query: 1327 PQDPVMFEGTVRSN---------LDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVT 1377
Q P F ++ N L ++ DE + ++L L +E L ++
Sbjct: 92 FQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-------LGDRLK 144
Query: 1378 ENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD----TATDNLIQQTLRQHFSDCT 1433
++ S GQ+Q +C+ R + + +L++DE +++D +NLIQ+ L+++F T
Sbjct: 145 DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE-LKKNF---T 200
Query: 1434 VLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTL 1484
++ + H + SD V G I E++ + +N SS Y +
Sbjct: 201 IIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSS---KTKRYIV 249
|
Length = 251 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 1e-12
Identities = 49/195 (25%), Positives = 100/195 (51%), Gaps = 22/195 (11%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA-----GQILIDGIDI--SLI 1314
+L+ ++ P T ++G +G GKST I+TL R+ + G I +DG+DI +
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 1315 GLHDLRSRLSIIPQDPVMFEGTVRSNL--------DPLEESTDEQIWEALDKCQLGDEVR 1366
+ +LR ++ ++ Q P F ++ N+ + E+ +E++ E+L L DEV
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEV- 136
Query: 1367 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR 1426
+ KLD ++ S GQ+Q +C+ R + +++++DE +++D + I+ +
Sbjct: 137 --KDKLD----KSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIH 190
Query: 1427 QHFSDCTVLTIAHRI 1441
+ D T++ + H +
Sbjct: 191 KLKEDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 1e-12
Identities = 63/223 (28%), Positives = 104/223 (46%), Gaps = 46/223 (20%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS- 1321
L +S P GE G++G +G+GKSTLI+ + + P +G++L+DG D++ + +LR
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80
Query: 1322 RLSI--IPQ-----------DPVMFEGTVRSNLDPLE------ESTDEQIWEALDKCQLG 1362
R I I Q D V PLE ++ E L+ L
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFDNVAL---------PLELAGTPKAEIKARVTELLELVGLS 131
Query: 1363 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ 1422
D+ + +L S GQ+Q V + R L K+L+ DEAT+++D AT I
Sbjct: 132 DKADRYPAQL-----------SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 1423 QTLRQHFSD--CTVLTIAHRITSVIDS--DLVLLLNHG-LIEE 1460
+ L+ + T++ I H + V+ D V +++ G L+E+
Sbjct: 181 ELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQ 222
|
Length = 343 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 70/219 (31%), Positives = 108/219 (49%), Gaps = 46/219 (21%)
Query: 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---TKAYVAQSPWIQSGK 696
+L V G RVA+ G G+GKS+LL+ I G + SG+L L G T ++ P S
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRP--VSML 76
Query: 697 IEDNILF---------------GKEMN---RERYNAVLDACSLKKDLEILSFGDQTVIGE 738
++N LF G ++N RE+ +A+ ++ L L G+
Sbjct: 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-------GQ 129
Query: 739 RGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK----- 793
LSGGQ+QR+ +AR L ++ I L D+PFSA+D L QE +L L+S
Sbjct: 130 ----LSGGQRQRVALARCLVREQPILLLDEPFSALD----PALRQE-MLTLVSQVCQERQ 180
Query: 794 -TVIYVTHQVE-FLPAADLILVMKDGKITQAGKYNDLIN 830
T++ V+H +E A LV+ DG+I G ++L++
Sbjct: 181 LTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
Length = 232 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 17/218 (7%)
Query: 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1320
L++ G+ T P G TG++G GSGKSTL++ L + P AG + + G+D LH L
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVD-----LHGLS 69
Query: 1321 SR-----LSIIPQD-PVMFEGTVRSNLDPLEESTDEQIW--EALDKCQLGDEVRKKEGKL 1372
R ++++ QD TVR + L +W ++ + D + L
Sbjct: 70 RRARARRVALVEQDSDTAVPLTVRDVV-ALGRIPHRSLWAGDSPHDAAVVDRALARTE-L 127
Query: 1373 DSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSD- 1431
+ S G+RQ V + R L + K+L+LDE T +D +R+ +
Sbjct: 128 SHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATG 187
Query: 1432 CTVLTIAHRIT-SVIDSDLVLLLNHGLIEEFDNPANLL 1468
TV+ H + + D V++L+ G + P +L
Sbjct: 188 VTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 34/228 (14%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
I+ ++ Y + L +S GE + G +G+GK+TL++ L+ + P+ GQ+
Sbjct: 2 IEFHNVSKAYPGGVA-ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 1306 IDGIDISLIGLHD-----LRSRLSIIPQD-PVMFEGTVRSNLD-PLE------ESTDEQI 1352
I G D++ L LR R+ ++ QD ++ + TV N+ PLE ++
Sbjct: 61 IAGEDVN--RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRV 118
Query: 1353 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATAS 1412
AL + L + +L S G++Q V + R ++ +L+ DE T +
Sbjct: 119 GAALRQVGLEHKADAFPEQL-----------SGGEQQRVAIARAIVNSPPLLLADEPTGN 167
Query: 1413 VDTATDNLIQQTLRQ-HFSDCTVLTIAHRITSVIDSDLVLLLNHGLIE 1459
+D I L++ + TV+ H D LV + H +I
Sbjct: 168 LDPDLSERILDLLKRLNKRGTTVIVATH------DLSLVDRVAHRVII 209
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 1e-12
Identities = 73/266 (27%), Positives = 127/266 (47%), Gaps = 41/266 (15%)
Query: 1242 SHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA 1301
S K++++DL RY VL+G+S G+ I+G +GSGKST ++ + + +P+
Sbjct: 2 SENKLNVIDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE 59
Query: 1302 GQILIDGIDISLI-------------GLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEEST 1348
G I+++G I+L+ L LR+RL+++ Q ++ S++ LE
Sbjct: 60 GSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW-----SHMTVLENVM 114
Query: 1349 DEQIWE-ALDKCQLGDEVRKKEGKLDSKV--TENGE-----NWSMGQRQLVCLGRVLLKR 1400
+ I L K E R++ K +KV E + + S GQ+Q V + R L
Sbjct: 115 EAPIQVLGLSK----QEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 170
Query: 1401 SKILMLDEATASVDTATDNLIQQTLR--QHFSD--CTVLTIAHRITSVID-SDLVLLLNH 1455
++L+ DE T+++D L+ + LR Q ++ T++ + H + S V+ L+
Sbjct: 171 PEVLLFDEPTSALDP---ELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQ 227
Query: 1456 GLIEEFDNPANLLEN-KSSSFSQLVA 1480
G IEE P L N +S Q +
Sbjct: 228 GKIEEEGAPEQLFGNPQSPRLQQFLK 253
|
Length = 257 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-12
Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 41/220 (18%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
I L +L + Y + +L+ +S T GE+ G+VGR G+GKSTL++ L +EP +G++
Sbjct: 4 ITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNL--------DPLEESTDEQIWEAL 1356
GL R+ + Q+P + TV + + L E + A
Sbjct: 62 RPK------GL-----RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLAD 110
Query: 1357 DKCQLGDEVRKKEGKLDSKVTE------------NGENWSM-----GQRQLVCLGRVLLK 1399
+L E+ +LD E E+ + G R+ V L R LL+
Sbjct: 111 PDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLE 170
Query: 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439
+L+LDE T +D + ++ L+++ TV+ ++H
Sbjct: 171 EPDLLLLDEPTNHLDLESIEWLEDYLKRY--PGTVIVVSH 208
|
Length = 530 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 2e-12
Identities = 57/253 (22%), Positives = 108/253 (42%), Gaps = 32/253 (12%)
Query: 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA-- 1301
G I + L+V Y VL +S GE ++G++G GK+TL++ + V+ A
Sbjct: 4 GGIRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 1302 GQILIDGIDISLIGLHDLRSRLSIIPQDPVMF-----EGTVRSNLDPLEEST---DEQIW 1353
G+I I D++ H + L+++ Q+ +F E V L + E++
Sbjct: 62 GRIAIADRDLTHAPPH--KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVA 119
Query: 1354 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASV 1413
+AL LGD +L S G +Q + + R + +L+LDE +++
Sbjct: 120 DALKLVGLGDAAAHLPAQL-----------SGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 1414 DTAT-DNLIQQTLRQH--FSDCTVLTIAH-RITSVIDSDLVLLLNHGLIEEFDNPANLLE 1469
D N+ ++ H + T+L + H + ++ +D ++ G + P L +
Sbjct: 169 DANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
Query: 1470 NKSSSFSQLVAEY 1482
+ F AE+
Sbjct: 229 APADGF---AAEF 238
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 55/214 (25%), Positives = 90/214 (42%), Gaps = 36/214 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK---ISGTLKLCGTK--------- 683
L D++L V G +A+ G+ GSGK++LL I G V SG + G
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82
Query: 684 -AYVAQSP-WIQSGKIEDNILF-----GKEMNRERYNAVLDACSLKKDLEILSFGDQTVI 736
AYV Q + + + + + + + L +DL + G V
Sbjct: 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVK 142
Query: 737 GERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS----- 791
G +SGG+++R+ IA L D + + D+P S +D+ T +L LS
Sbjct: 143 G-----ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVS-----TLSQLARR 192
Query: 792 SKTVIYVTHQ--VEFLPAADLILVMKDGKITQAG 823
++ VI HQ + D IL++ G+I +G
Sbjct: 193 NRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 2e-12
Identities = 55/240 (22%), Positives = 96/240 (40%), Gaps = 60/240 (25%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTL------------- 677
+ ++ ++ G + + G GSGKS L I+G +PK + G +
Sbjct: 21 VDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80
Query: 678 ---KLCGTK-AYVAQSPWIQSG-----KIEDNI---------LFGKEMNRERYNAVLDAC 719
K+ G + A + Q P + I D I K+ +ER +L+
Sbjct: 81 ELRKIRGKEIAMIFQDP--MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELV 138
Query: 720 SLKKDLEIL-SFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTG 778
+ L S+ + LSGG +QR+ IA AL + + + D+P +A+D
Sbjct: 139 GIPDPERRLKSYPHE---------LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTV- 188
Query: 779 SHLFQEVLLGLL------SSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINS 831
Q +L LL +I +TH + + AD + VM G+I + G ++ +
Sbjct: 189 ----QAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 55/228 (24%), Positives = 109/228 (47%), Gaps = 31/228 (13%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISLIGLH 1317
L I+ + P T ++G +G GKSTL++ R+ + G IL +G +I G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 1318 --DLRSRLSIIPQDPVMFEGTVRSNL--------DPLEESTDEQIWEALDKCQLGDEVRK 1367
LR ++ ++ Q P F ++ N+ + +++ D + ++L L DEV+
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK- 140
Query: 1368 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD-TAT---DNLIQQ 1423
++ ++ + S GQ+Q +C+ R L +++++DE +++D AT ++LI+
Sbjct: 141 ------DRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194
Query: 1424 TLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470
+++ TV+ + H + SD + G + EFD + EN
Sbjct: 195 LKKEY----TVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFEN 238
|
Length = 253 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 58/193 (30%), Positives = 86/193 (44%), Gaps = 26/193 (13%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY-- 685
LK I+L A+ G G GKS+ L + L I+G + L G Y
Sbjct: 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP 77
Query: 686 -------------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC---SLKKDLEILS 729
V Q P I +N+++G + + AVLD SLK+
Sbjct: 78 NEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE 137
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789
D + E ++LSGGQ+QR+ IAR L D+ L D+P SA+D + + + + +LL L
Sbjct: 138 VKDH--LHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQI-ENMLLEL 194
Query: 790 LSSKTVIYVTHQV 802
T+I VTH +
Sbjct: 195 RDQYTIILVTHSM 207
|
Length = 252 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-12
Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 39/218 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L+ ++L+V G V G G GK++LL ++G +P SG+++L G
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75
Query: 684 --AYVAQSPWIQSG-KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGD--QTVIGE 738
AYV Q I +E+N+L G R + D EI + ++G
Sbjct: 76 GIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPD--------EIYELFPVLKEMLGR 127
Query: 739 RGINLSGGQKQRIQIARALYQDSDIYLFDDPF-----SAVDAHTGSHLFQEVLLGLLSSK 793
RG +LSGGQ+Q++ IARAL + L D+P S + V+ L +
Sbjct: 128 RGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIK------DIGRVIRRLRAEG 181
Query: 794 --TVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDL 828
++ V ++F AD VM+ G++ +G ++L
Sbjct: 182 GMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-12
Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 31/198 (15%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--AYVAQSPWIQ 693
L++++L + G R+ + G G+GKS+LL + GE+ SG + Y++Q P +
Sbjct: 19 LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLD 78
Query: 694 SGK-IEDNIL--FGKEMNRE-RYNAVLDACSLKKDLEILSFGDQ--------------TV 735
K + D ++ FG+ + D +
Sbjct: 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEA 138
Query: 736 IGERGI--------NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL 787
+ G +LSGG ++R+ +ARAL ++ D+ L D+P + +D + L ++ L
Sbjct: 139 LLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL-EDYLK 197
Query: 788 GLLSSKTVIYVTHQVEFL 805
TVI V+H FL
Sbjct: 198 RY--PGTVIVVSHDRYFL 213
|
Length = 530 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 65/205 (31%), Positives = 93/205 (45%), Gaps = 38/205 (18%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
VL +S G+ ++G G+GKSTL++ + +V P G I + +
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 1322 RLSIIPQ----DPVMFEGTVRS--NLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSK 1375
R+ +PQ D + TV L P + D I AL + Q G + KL
Sbjct: 68 RIGYVPQKLYLDTTL-PLTVNRFLRLRPGTKKED--ILPALKRVQAGHLIDAPMQKL--- 121
Query: 1376 VTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT----ATDNLIQQTLRQHFSD 1431
S G+ Q V L R LL R ++L+LDE T VD A +LI Q LR+ D
Sbjct: 122 --------SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ-LRREL-D 171
Query: 1432 CTVLTIAHRITSVI-DSDLVLLLNH 1455
C VL ++H + V+ +D VL LNH
Sbjct: 172 CAVLMVSHDLHLVMAKTDEVLCLNH 196
|
Length = 251 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 2e-12
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 30/233 (12%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE------PAAGQILIDGIDISLIG 1315
+L+ I+ P GI+G +GSGKSTL++ L R++E G++L G DI I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 1316 LHDLRSRLSIIPQDPVMFEG-TVRSNLD-PL-------EESTDEQIWEALDKCQLGDEVR 1366
LR + ++ Q P F ++ N+ PL + + + E L K L EV
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 1367 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR 1426
+L+S ++ S GQ+Q + + R L + K+L++DE T+ +D I++ +
Sbjct: 145 D---RLNSPASQ----LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT 197
Query: 1427 QHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEE-------FDNPANLLENK 1471
+ ++ ++ ++H V +D V L +G + E F +P N L K
Sbjct: 198 ELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEK 250
|
Length = 257 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 31/252 (12%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
I++ DL RY L+G+S + P G KT ++G G+GKSTL+ L I P G++
Sbjct: 5 IEVEDLHFRY-KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDP--VMFEGTVRS-------NLDPLEESTDEQIWEAL 1356
+ G +++ +RS++ ++ QDP +F TV N+ ++ + ++ EAL
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEAL 123
Query: 1357 DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA 1416
++ D K L S GQ++ V + VL +++LDE A +D
Sbjct: 124 KAVRMWDFRDKPPYHL-----------SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172
Query: 1417 TDNLIQQTL-RQHFSDCTVLTIAHRITSVID-SDLVLLLNHG-LIEEFDNPANLLENKSS 1473
+ + L R H TV+ H + + +D V++L G ++ E D +LL ++
Sbjct: 173 GQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK--SLLTDE-- 228
Query: 1474 SFSQLVAEYTLR 1485
+V + LR
Sbjct: 229 ---DIVEQAGLR 237
|
Length = 274 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 2e-12
Identities = 73/256 (28%), Positives = 116/256 (45%), Gaps = 48/256 (18%)
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----TKAYVAQS---- 689
++ V G + G G+GK++ L +LG +G++ LCG ++A A+
Sbjct: 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
Query: 690 -PWIQS-----GKIEDNILFGKEMN------RERYNAVLDACSLKKDLEILSFGDQTVIG 737
P + E+ ++FG+ R +L+ L+ + D V G
Sbjct: 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE------NKADAKV-G 137
Query: 738 ERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS-KTVI 796
E LSGG K+R+ +ARAL D D+ + D+P + +D HL E L LL+ KT++
Sbjct: 138 E----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARGKTIL 192
Query: 797 YVTHQVEFLPAA----DLILVMKDGKITQAGKYNDLINS--GTDFMELVGAHEQALLALG 850
TH F+ A D + V+++G+ G + LI S G D +E+ G AL
Sbjct: 193 LTTH---FMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIEIYGPDPVALRD-- 247
Query: 851 SIEGRPASERA--SGE 864
E P +ER SGE
Sbjct: 248 --ELAPLAERTEISGE 261
|
Length = 306 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 64/220 (29%), Positives = 96/220 (43%), Gaps = 47/220 (21%)
Query: 613 SSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----L 667
+TAL++ + N + L DI++++ A G G GKS+LL C L
Sbjct: 21 DEQTALEVRNLNLFYGDKQ---ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDL 77
Query: 668 GEVPKISGTLKLCGTKAY---------------VAQSPWIQSGKIEDNILFGKEMNRERY 712
+ +I G ++L G Y V Q P I +N+++G +
Sbjct: 78 VDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINN 137
Query: 713 NAVLDAC---SLK--------KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761
VLD SL+ KD + E LSGGQ+QR+ IARA+ +
Sbjct: 138 RRVLDEAVERSLRGAALWDEVKDR----------LHENAFGLSGGQQQRLVIARAIAIEP 187
Query: 762 DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK-TVIYVTH 800
++ L D+P SA+D S L E L+ L SK T++ VTH
Sbjct: 188 EVLLLDEPTSALDPI--STLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 60/232 (25%), Positives = 107/232 (46%), Gaps = 35/232 (15%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-- 681
N S + L D++L + G ++ G G+GKS+LLS + + K SG + + G
Sbjct: 6 NVSKSYGTK-VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLE 64
Query: 682 -----------TKAYVAQSPWIQSG-KIEDNILFGK-EMNRERYNAVLDACSLKKDLEI- 727
+ + Q I S + D + FG+ ++ R K+D I
Sbjct: 65 LTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLT--------KEDRRII 116
Query: 728 ---LSFGDQTVIGERGIN-LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
+ + + +R ++ LSGGQ+QR IA L QD+D L D+P + +D + +
Sbjct: 117 NEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176
Query: 784 EVLLGLLS---SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831
+L L+ KT++ V H + F +D I+ +K+GK+ + G +++I
Sbjct: 177 --ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226
|
Length = 252 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 61/234 (26%), Positives = 108/234 (46%), Gaps = 28/234 (11%)
Query: 1252 QVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI 1311
V + +VL +S P G T I+G G+GKSTL+ + R+++ +G+I IDG+++
Sbjct: 6 NVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLEL 65
Query: 1312 SLIGLHDLRSRLSIIPQ-----------DPVMFEGTVRSNLDPLEESTDEQ-IWEALDKC 1359
+ +L +LSI+ Q D V F S +E D + I EA++
Sbjct: 66 TSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKE--DRRIINEAIEYL 123
Query: 1360 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN 1419
L D + LD S GQRQ + VL + + ++LDE ++D
Sbjct: 124 HLED---LSDRYLDE--------LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSV 172
Query: 1420 LIQQTLRQHFSDC--TVLTIAHRIT-SVIDSDLVLLLNHGLIEEFDNPANLLEN 1470
I + LR+ + T++ + H I + SD ++ L +G + + +P +++
Sbjct: 173 QIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226
|
Length = 252 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 3e-12
Identities = 50/201 (24%), Positives = 105/201 (52%), Gaps = 24/201 (11%)
Query: 1276 TGIVGRTGSGKSTLIQTLFRIVE--PAA---GQILIDGIDI--SLIGLHDLRSRLSIIPQ 1328
T ++G +G GKST ++++ R+ + P+A G+IL +G++I S I + +LR + ++ Q
Sbjct: 50 TALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQ 109
Query: 1329 DPVMFEGTVRSNL--------DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380
P F ++ +N+ + + DE + E+L K L DEV+ ++ +
Sbjct: 110 KPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSA 162
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHR 1440
+ S GQ+Q +C+ R L + +L+LDE +++D ++ I++ + + + +++ + H
Sbjct: 163 LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHN 222
Query: 1441 ITSV--IDSDLVLLLNHGLIE 1459
+ + LN L+E
Sbjct: 223 MQQALRVSDRTAFFLNGDLVE 243
|
Length = 268 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 3e-12
Identities = 51/213 (23%), Positives = 102/213 (47%), Gaps = 25/213 (11%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI--VEPAA- 1301
K+ L L V + ++ +S FP T I+G +G GKST+++++ R+ + P+A
Sbjct: 4 KVKLEQLNVHFGKNH--AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 1302 --GQILIDGIDISLIGLH--DLRSRLSIIPQDPVMFEGT---------VRSNLDPLEEST 1348
G+IL+D DI G+ +R R+ ++ Q P F + N
Sbjct: 62 VTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEA 121
Query: 1349 DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDE 1408
DE + +L + L DEV+ ++ N S GQ+Q +C+ R + + +++++DE
Sbjct: 122 DEIVESSLKRVALWDEVK-------DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDE 174
Query: 1409 ATASVDTATDNLIQQTLRQHFSDCTVLTIAHRI 1441
+++D + I++ + + T++ + H +
Sbjct: 175 PASALDPISTLKIEELIEELKEKYTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 4e-12
Identities = 66/256 (25%), Positives = 114/256 (44%), Gaps = 43/256 (16%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304
+++ DL RY VL+G+S G+ I+G +GSGKST ++ + + +P+AG I
Sbjct: 6 ALEVEDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63
Query: 1305 LIDGIDISLIG-------------LHDLRSRLSIIPQD------PVMFEGTVRSNLDPLE 1345
++G +I L L LR+RL ++ Q + E + + + L
Sbjct: 64 RVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLG 123
Query: 1346 ESTDEQIWEA---LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402
S E I A L K + ++ L S GQ+Q V + R L +
Sbjct: 124 VSKAEAIERAEKYLAKVGIAEKADAYPAHL-----------SGGQQQRVAIARALAMEPE 172
Query: 1403 ILMLDEATASVDTATDNLIQQTLR--QHFSD--CTVLTIAHRITSVID-SDLVLLLNHGL 1457
+++ DE T+++D L+ + L+ Q ++ T++ + H + D S V+ L+ G
Sbjct: 173 VMLFDEPTSALDP---ELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGK 229
Query: 1458 IEEFDNPANLLENKSS 1473
IEE P + N S
Sbjct: 230 IEEEGPPEQVFGNPQS 245
|
Length = 256 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 4e-12
Identities = 68/218 (31%), Positives = 104/218 (47%), Gaps = 34/218 (15%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCG---TKA---- 684
N + ++NL + G V + G G GK+++L + G E P G + + G T
Sbjct: 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT-EGQIFIDGEDVTHRSIQQ 77
Query: 685 ----YVAQS----PWIQSGKIEDNILFGKEM----NRERYNAVLDACSLKKDLEILSFGD 732
V QS P + G +N+ +G +M ER V +A L DL F D
Sbjct: 78 RDICMVFQSYALFPHMSLG---ENVGYGLKMLGVPKEERKQRVKEALELV-DLA--GFED 131
Query: 733 QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-LGLLS 791
+ V +SGGQ+QR+ +ARAL + LFD+P S +DA+ + +++ L
Sbjct: 132 RYVD-----QISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQF 186
Query: 792 SKTVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDL 828
+ T +YVTH Q E +D ++VM GKI Q G +L
Sbjct: 187 NITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 23/178 (12%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LHD 1318
VL+G+S + GE IVG +GSGKSTL+ L + P +G++L +G +S +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 1319 LRSR-LSIIPQ-DPVMFEGTVRSNLD-PL------EESTDEQIWEALDKCQLGDEVRKKE 1369
LR++ L I Q ++ + T N+ PL + E+ +E L+K L + +
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP 139
Query: 1370 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ 1427
+L S G+RQ V + R L+ + +++ DE T ++D +I + +
Sbjct: 140 SEL-----------SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE 186
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 40/226 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQS---PWI 692
L +N V G +VA+ G GSGKS++L ++ P G +++ G + Y P +
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLV 75
Query: 693 QSG-----KIEDNI-LFGKEMNRERYNAVLDACSL--------------KKDLEILSFGD 732
+ ++ + I + + N + VLD + K+ +E+L D
Sbjct: 76 PADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELL---D 132
Query: 733 QTVIGERG----INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-- 786
+ ++ LSGGQ+QR+ IARAL + LFD+ SA+D L EVL
Sbjct: 133 MVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALD----PELVGEVLNV 188
Query: 787 ---LGLLSSKTVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDL 828
L T++ VTH++ F AD + G+I + GK +++
Sbjct: 189 IRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 5e-12
Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 39/221 (17%)
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP 690
S ++D++ V G + + G VG+G++ L + G P SG + L G K +SP
Sbjct: 270 SGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDG-KPVRIRSP 328
Query: 691 --WIQSG-----------------KIEDNILF--------GKEMNRERYNAVLDACSLKK 723
I++G I +NI ++R + A+ + +
Sbjct: 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAER--YIR 386
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
L I + + IG LSGG +Q++ +AR L D + + D+P +D + +++
Sbjct: 387 RLRIKTPSPEQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR 442
Query: 784 EVLLGLLSS--KTVIYVTHQV-EFLPAADLILVMKDGKITQ 821
L+ L++ K ++ ++ ++ E L +D ILVM++G+I
Sbjct: 443 --LIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481
|
Length = 500 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 5e-12
Identities = 55/248 (22%), Positives = 100/248 (40%), Gaps = 50/248 (20%)
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGK- 696
D + + A+ G GSGK++L+ I +G + + + S K
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLI-------AGLTRPDEGEIVLNGRTLFDSRKG 67
Query: 697 ------------------------IEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGD 732
+ N+ +G + R + + +E+L G
Sbjct: 68 IFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFE----RVIELLGIGH 123
Query: 733 QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL--LGLL 790
++G LSGG+KQR+ I RAL + L D+P +A+D E+L L L
Sbjct: 124 --LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD----DPRKYEILPYLERL 177
Query: 791 SSKT---VIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQAL 846
++ ++YV+H + E L AD ++V++DG++ AG ++ S + + +Q
Sbjct: 178 HAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD--LPWLAREDQGS 235
Query: 847 LALGSIEG 854
L G +
Sbjct: 236 LIEGVVAE 243
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-12
Identities = 63/271 (23%), Positives = 110/271 (40%), Gaps = 53/271 (19%)
Query: 585 TKVSLQRIASFFCLDDLQPDLVEKQPSGSSETA---------------LDIVDGNFSWDI 629
K + RI L+ L+ L E++P + L+ + + +D
Sbjct: 277 AKKAKSRIK---RLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYD- 332
Query: 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---AYV 686
LKD++ ++ G R+A+ G G+GKS+LL + GE+ +SGT+K G Y
Sbjct: 333 -GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK-VGETVKIGYF 390
Query: 687 AQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSF-------GDQTVIGER 739
Q + D + + + + E+ ++ G+ +
Sbjct: 391 DQH---RDELDPDKTVL---------EELSEGFPDGDEQEVRAYLGRFGFTGED--QEKP 436
Query: 740 GINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS--KTVIY 797
LSGG+K R+ +A+ L Q ++ L D+P + +D + E L L TV+
Sbjct: 437 VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES-----LEALEEALLDFEGTVLL 491
Query: 798 VTHQVEFLPA-ADLILVMKDGKITQAGKYND 827
V+H FL A I +++D G Y D
Sbjct: 492 VSHDRYFLDRVATRIWLVEDKVEEFEGGYED 522
|
Length = 530 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 6e-12
Identities = 62/230 (26%), Positives = 102/230 (44%), Gaps = 42/230 (18%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTKAYVAQSPWIQS 694
LK ++L+ G +++ G+ GSGKS+ L CI E P G++ + G + + Q
Sbjct: 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS-EGSIVVNGQTINLVRDKDGQL 79
Query: 695 GKIEDNILFGKEMNRERYNAVLDACSLKKDLEILS-----------------------FG 731
+ N L + R R V +L + +L +
Sbjct: 80 KVADKNQL---RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYL 136
Query: 732 DQTVIGERG-----INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786
+ I ER ++LSGGQ+QR+ IARAL + ++ LFD+P SA+D L EVL
Sbjct: 137 AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALD----PELVGEVL 192
Query: 787 LGLL----SSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINS 831
+ KT++ VTH++ F + ++ + GKI + G L +
Sbjct: 193 RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242
|
Length = 257 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 7e-12
Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 30/204 (14%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
VL+ I+ GE I G TGSGK++L+ + +EP+ G+I G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDK-CQLGDEVRKKEGKLDSKVTENG 1380
R+S Q + GT++ N+ S DE ++++ K CQL +++ K K ++ + E G
Sbjct: 99 RISFSSQFSWIMPGTIKENI-IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGG 157
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHR 1440
S GQR + L R + K + + +LD +D T+ I F C +A++
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEI-------FESCVCKLMANK 210
Query: 1441 ----ITSVID----SDLVLLLNHG 1456
+TS ++ +D +L+L+ G
Sbjct: 211 TRILVTSKMEHLKKADKILILHEG 234
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 7e-12
Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 15/218 (6%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
V++ +S T GE G++G G+GK+T + IV AG I+ID DISL+ LH R+
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA-RA 76
Query: 1322 RLSI--IPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRK--KEGKLDSKV 1376
R I +PQ+ +F +V NL + QI + L Q D + +E ++
Sbjct: 77 RRGIGYLPQEASIFRRLSVYDNLMAV-----LQIRDDLSAEQREDRANELMEEFHIEHLR 131
Query: 1377 TENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSD--CTV 1434
G++ S G+R+ V + R L K ++LDE A VD + I++ + +H D V
Sbjct: 132 DSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII-EHLRDSGLGV 190
Query: 1435 LTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471
L H + + + +++ G + P +L+++
Sbjct: 191 LITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 7e-12
Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 33/209 (15%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L IS + GE G++G G+GK+T I+ + I+ P +G++L DG + + R+
Sbjct: 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARN 70
Query: 1322 RLSIIPQD----PVMFEGTVRSNLD--------PLEESTDEQIWEALDKCQLGDEVRKKE 1369
R+ +P++ P M V L EE+ +I E L++ +L +
Sbjct: 71 RIGYLPEERGLYPKM---KVIDQLVYLAQLKGLKKEEAR-RRIDEWLERLELSE---YAN 123
Query: 1370 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR-QH 1428
++ E S G +Q V ++ ++L+LDE + +D L++ +R
Sbjct: 124 KRV--------EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA 175
Query: 1429 FSDCTVLTIAHRITSVID-SDLVLLLNHG 1456
+ TV+ H++ V + D VLLLN G
Sbjct: 176 RAGKTVILSTHQMELVEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 8e-12
Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 16/164 (9%)
Query: 686 VAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLS 744
V+Q P + + I +NI FGKE RE ++ + +E L T +G G +LS
Sbjct: 1301 VSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLS 1360
Query: 745 GGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL--LSSKTVIYVTHQV 802
GGQKQRI IARAL ++ I L D+ S++D+++ L ++ ++ + + KT+I + H++
Sbjct: 1361 GGQKQRIAIARALLREPKILLLDEATSSLDSNS-EKLIEKTIVDIKDKADKTIITIAHRI 1419
Query: 803 EFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQAL 846
+ +D I+V +N+ +G+ F++ G HE+ L
Sbjct: 1420 ASIKRSDKIVV-----------FNNPDRTGS-FVQAHGTHEELL 1451
|
Length = 1466 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 8e-12
Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 36/220 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---TK--------- 683
+ ++L V G V + G G+GK++ I+G V SG + L G TK
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 684 --AYVAQSPWIQSG-KIEDNIL-------FGKEMNRERYNAVLDACSLKKDLEILSFGDQ 733
Y+ Q I +E+NIL K+ E+ +L+ + I
Sbjct: 76 GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLE------EFHITHLRKS 129
Query: 734 TVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793
+ +LSGG+++R++IARAL + L D+PF+ VD + Q+++ L
Sbjct: 130 -----KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI-QKIIKILKDRG 183
Query: 794 TVIYVT-HQV-EFLPAADLILVMKDGKITQAGKYNDLINS 831
+ +T H V E L D ++ +GK+ G ++ +
Sbjct: 184 IGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 8e-12
Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 19/220 (8%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP---AAGQILIDGIDISLIGLHD 1318
L IS + P G T ++G GSGKST+ + + ++ P +I +DGI ++ + D
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81
Query: 1319 LRSRLSIIPQDP------VMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKL 1372
+R ++ I+ Q+P V L+ E I ++ +V G L
Sbjct: 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMI-------KIVRDVLADVGML 134
Query: 1373 DSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSD- 1431
D +E N S GQ+Q V + +L KI++LDE+T+ +D A I + +R+
Sbjct: 135 DYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKN 193
Query: 1432 -CTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLEN 1470
TV++I H I +D VL+L+ G + +P +
Sbjct: 194 NLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
|
Length = 282 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 8e-12
Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 27/195 (13%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
+L +S TFP G+ TG++G GSGKSTL++ L R P+ G+IL+D +
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 1322 RLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWE-ALDKCQLGDEVRKKEGKLDSKVTEN 1379
+++ +PQ EG TVR + + W AL + G R+ K++ ++
Sbjct: 86 KVAYLPQQLPAAEGMTVRELV-----AIGRYPWHGALGR--FGAADRE---KVEEAISLV 135
Query: 1380 G---------ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD----NLIQQTLR 1426
G ++ S G+RQ + ++ + S+ L+LDE T+++D A L+ + +
Sbjct: 136 GLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195
Query: 1427 QHFSDCTVLTIAHRI 1441
+ TV+ + H I
Sbjct: 196 ER--GLTVIAVLHDI 208
|
Length = 265 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 9e-12
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 34/209 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----------- 684
L ++L + GM + G G+GK++L+ + P SGT+++ G
Sbjct: 16 LDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRI 74
Query: 685 -YVAQSP-WIQSGKIEDNILFGKEMNRERYNAVLDACSLKKD-------LEILSFGDQTV 735
Y+ Q + + + + Y A L K+ LE+++ GD
Sbjct: 75 GYLPQEFGVYPNFTVREFL---------DYIAWLKGIPSKEVKARVDEVLELVNLGD--R 123
Query: 736 IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTV 795
++ +LSGG ++R+ IA+AL D I + D+P + +D F+ +L L + V
Sbjct: 124 AKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE-RIRFRNLLSELGEDRIV 182
Query: 796 IYVTHQVEFLPA-ADLILVMKDGKITQAG 823
I TH VE + + + + V+ GK+ G
Sbjct: 183 ILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 9e-12
Identities = 59/231 (25%), Positives = 114/231 (49%), Gaps = 33/231 (14%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE--PA---AGQILIDGIDI--SLIG 1315
L+ I+ E T I+G +G GKST I+TL R+VE P+ G+IL +I
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 1316 LHDLRSRLSIIPQDPVMFEGTVRSNL--DPL------EESTDEQIWEALDKCQLGDEVRK 1367
+ +LR+ + ++ Q P F ++ N+ P +++ DE + ++L + DE++
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK- 158
Query: 1368 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT----DNLIQQ 1423
++ +N S GQ+Q +C+ R L ++++DE T+++D + + L+Q+
Sbjct: 159 ------DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212
Query: 1424 TLRQHFSDCTVLTIAHRITSV--IDSDLVLLLNHGLIEEFDNPANLLENKS 1472
L++ +S ++ + H + I LN G + E+D+ + N S
Sbjct: 213 -LKKDYS---IIIVTHNMQQAARISDKTAFFLN-GYVNEYDDTDKIFSNPS 258
|
Length = 271 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 9e-12
Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 40/227 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAY-----VAQSP 690
LKDI+ +++ G RV + G G+GKS+LL I G SG +K+ G A P
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDP 102
Query: 691 WIQSGKIEDNILF-------GKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINL 743
+G+ +NI ++ E+ + +++ E+ F DQ V
Sbjct: 103 -ELTGR--ENIYLRGLILGLTRKEIDEKVDEIIEFA------ELGDFIDQPV-----KTY 148
Query: 744 SGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-----SKTVIYV 798
S G R+ + A + + DI L D+ + DA FQE L L+ +KT++ V
Sbjct: 149 SSGMYARLAFSVATHVEPDILLLDEVLAVGDAA-----FQEKCLERLNELVEKNKTIVLV 203
Query: 799 THQVEFLP-AADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQ 844
+H + + D + ++ G+I G ++I + + E +
Sbjct: 204 SHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA---YEEDLADRLS 247
|
Length = 249 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 19/227 (8%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---------- 682
N L++I+ + G RV + G GSGKS+LLS L + G +++ G
Sbjct: 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDGVSWNSVPLQKW 75
Query: 683 -KAY--VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQT--VIG 737
KA+ + Q +I SG N+ + + E V + LK +E F Q V+
Sbjct: 76 RKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIE--QFPGQLDFVLV 133
Query: 738 ERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIY 797
+ G LS G KQ + +AR++ + I L D+P + +D T + ++ L + TVI
Sbjct: 134 DGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT-YQVIRKTLKQAFADCTVIL 192
Query: 798 VTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQ 844
H++E + LV+++ K+ Q L+N + F + + ++
Sbjct: 193 SEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSDR 239
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 1e-11
Identities = 53/199 (26%), Positives = 95/199 (47%), Gaps = 28/199 (14%)
Query: 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVM 1332
GE I+G +G+GKSTL+ + +EPA+G I ++ + GL + +S++ Q+ +
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHT--GLAPYQRPVSMLFQENNL 81
Query: 1333 FEG-TVRSN----LDP---LEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWS 1384
F TVR N L P L E++ +A + + D + + +L S
Sbjct: 82 FAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQL-----------S 130
Query: 1385 MGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN----LIQQTLRQHFSDCTVLTIAHR 1440
GQRQ V L R L++ + IL+LDE +++D L++Q + T+L + H
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSER--QRTLLMVTHH 188
Query: 1441 ITSVIDS-DLVLLLNHGLI 1458
++ + +++ G I
Sbjct: 189 LSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 22/172 (12%)
Query: 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG---IDISL-IGLHDLRS 1321
I E TGI G +G+GKSTL++ + + +P G I+++G D I L +
Sbjct: 17 IDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75
Query: 1322 RLSIIPQDPVMFEG-TVRSN----LDPLEESTDE-QIWEALDKCQLGDEVRKKEGKLDSK 1375
++ ++ Q +F VR N L D + E LD L + + +L
Sbjct: 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQL--- 132
Query: 1376 VTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ 1427
S G++Q V L R L + ++L+LDE +++D A + L+Q
Sbjct: 133 --------SGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQ 176
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 24/190 (12%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
L DI+L+ A+ G G GKS+ L C+ L ++ G + L G Y
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
V Q P I +N+ +G +N + A L A +++ L + D+
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYL-AERVERSLRHAALWDEVK 140
Query: 736 --IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793
+ E + LSGGQ+QR+ IARAL + ++ L D+P SA+D + +E++ L +
Sbjct: 141 DRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP-IATQKIEELIHELKARY 199
Query: 794 TVIYVTHQVE 803
T+I VTH ++
Sbjct: 200 TIIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 1e-11
Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 26/191 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
L DINL ++ A+ G G GKS+ L C+ L KI G + L G Y
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC---SLKKDLEILSFGD 732
V Q P I DN+ +G ++ + LD +LKK D
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD 139
Query: 733 QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS 792
+ + + LSGGQ+QR+ IAR + D+ L D+P SA+D + +++++ L
Sbjct: 140 D--LKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP-ISTLKIEDLMVELKKE 196
Query: 793 KTVIYVTHQVE 803
T++ VTH ++
Sbjct: 197 YTIVIVTHNMQ 207
|
Length = 251 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 1e-11
Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 34/196 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSC-------------------------ILG-E 669
LK+IN+ V A+ G G GKS+ L C IL E
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 670 VPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILS 729
V I +++ + V Q P I +N+ +G + + ++L+ ++ L +
Sbjct: 92 VDPIEVRMRI----SMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEE-RVENALRNAA 146
Query: 730 FGDQTV--IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL 787
D+ +G+ NLSGGQ+QR+ IARAL D +I LFD+P SA+D + + +E++
Sbjct: 147 LWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASI-EELIS 205
Query: 788 GLLSSKTVIYVTHQVE 803
L + T++ VTH ++
Sbjct: 206 DLKNKVTILIVTHNMQ 221
|
Length = 265 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 1e-11
Identities = 61/191 (31%), Positives = 85/191 (44%), Gaps = 28/191 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTL------------- 677
L D++LK+ +A G G GKS+LL C L K+ G L
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95
Query: 678 --KLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC---SLKKDLEILSFGD 732
KL V Q P I +NI F N Y LD SL++ D
Sbjct: 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANG--YKGNLDELVEDSLRRAAIWEEVKD 153
Query: 733 QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS 792
+ + E+G LSGGQ+QR+ IARA+ D+ L D+P SA+D + +E+ L L
Sbjct: 154 K--LKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDP-ISTRQVEELCLELKEQ 210
Query: 793 KTVIYVTHQVE 803
T+I VTH ++
Sbjct: 211 YTIIMVTHNMQ 221
|
Length = 274 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-11
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 28/219 (12%)
Query: 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS-RLS 1324
+S T G+ I+G GSGKSTL + L ++EP +G++LID + G + RS R+
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHF-GDYSYRSQRIR 90
Query: 1325 IIPQDPV-----------MFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLD 1373
+I QDP + + +R N D E ++QI E L ++ G L
Sbjct: 91 MIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETL----------RQVGLLP 140
Query: 1374 SKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD----NLIQQTLRQHF 1429
+ + GQ+Q + L R L+ R K+++ DEA AS+D + NL+ + +
Sbjct: 141 DHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQG 200
Query: 1430 SDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLL 1468
+T + I SD VL+++ G + E + A++L
Sbjct: 201 ISYIYVTQHLGMMKHI-SDQVLVMHQGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 11/186 (5%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG-IDISLIGLHDLRS 1321
L +S + GE ++G G+GK+TL+ + P G++L DG D++ + H +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR-IA 79
Query: 1322 RLSIIP--QDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEG-----KLD 1373
R I Q P +FE TVR NL+ L + D+ ++ +L +E R+ + L
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLE-LALNRDKSVFASLFARLRAEERRRIDELLATIGLG 138
Query: 1374 SKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCT 1433
+ S GQ+Q + +G +L + K+L+LDE A + A + L+ +
Sbjct: 139 DERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHS 198
Query: 1434 VLTIAH 1439
+L + H
Sbjct: 199 ILVVEH 204
|
Length = 249 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-11
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 42/220 (19%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------TKAY 685
LK I+ + G A+ G G+GKS+L+ I G VP SGTL++ G KA+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84
Query: 686 ------VAQSPWI---QSGKIEDNILFG---KEMNRERYNAVLDA--CSLKKDLE--ILS 729
V Q P + S +++NILFG ++ + ++ +L A C L D L
Sbjct: 85 QLGIYLVPQEPLLFPNLS--VKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLE 142
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789
D+ Q ++I R L +DS I + D+P +++ LF + L
Sbjct: 143 VADR---------------QIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELL 187
Query: 790 LSSKTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDL 828
+++++H++ E AD I VM+DG I +GK DL
Sbjct: 188 AQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-11
Identities = 63/275 (22%), Positives = 118/275 (42%), Gaps = 46/275 (16%)
Query: 1142 FHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLI 1201
F++A ++ W D + T++ TL+FL + P ++ + L TLL+ +
Sbjct: 251 FYMANSLGWA----DTNVAATYSLTLLFLRT-------PLLSAVG-----ALPTLLSAQV 294
Query: 1202 WFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPL 1261
F NK+ P + + W ++L ++ Y
Sbjct: 295 AF-----NKL----NKLALA--PYKAEFPR--PQAFPDWQ---TLELRNVTFAY-QDNGF 337
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
+ I+ T GE ++G GSGKSTL L + +P +G+IL+DG ++ D R
Sbjct: 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRK 397
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEA-LDKCQLGDEVRKKEGKL-DSKVTEN 1379
S + D +F+ L P + + + E L++ ++ ++ ++G++ + K+
Sbjct: 398 LFSAVFTDFHLFDQL----LGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKL--- 450
Query: 1380 GENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
S GQ++ + L L + IL+LDE A D
Sbjct: 451 ----SKGQKKRLALLLALAEERDILLLDEWAADQD 481
|
Length = 547 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-11
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 25/165 (15%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR-- 1320
+ S GE I+G +GSGKSTL++ L R++EP G+IL+DG DI+ + +LR
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 1321 --SRLSIIPQDPVMF-EGTVRSNLD--------PLEESTDEQIWEALDKCQLGDEVRKKE 1369
++S++ Q + TV N+ P E +E+ EAL+ L K
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAER-EERALEALELVGLEGYADKYP 162
Query: 1370 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
+L S G +Q V L R L IL++DEA +++D
Sbjct: 163 NEL-----------SGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 2e-11
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 67/218 (30%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
++L + R+ L G+S + GE ++G G+GKSTL++ L + +P +G+IL
Sbjct: 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDK-----CQ 1360
+G S P +A Q
Sbjct: 59 ---------------------------VDGKEVSFASP---------RDARRAGIAMVYQ 82
Query: 1361 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA-TDN 1419
L S+G+RQ+V + R L + +++L+LDE TA++ A +
Sbjct: 83 L----------------------SVGERQMVEIARALARNARLLILDEPTAALTPAEVER 120
Query: 1420 LIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHG 1456
L + R V+ I+HR+ V + +D V +L G
Sbjct: 121 LFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 38/224 (16%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 683
+ D++L+V G V + G G+GK++ I+G V SG + L
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 684 ----AYVAQSPWIQSG-KIEDNILFGKEM---------NRERYNAVLDACSLKKDLEILS 729
Y+ Q I +EDNI+ E+ +E +A+L+ + I
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLE------EFHITH 131
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789
D + +LSGG+++R++IARAL + L D+PF+ VD + Q ++ L
Sbjct: 132 LRDS-----KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI-QRIIKHL 185
Query: 790 LSSKTVIYVT-HQV-EFLPAADLILVMKDGKITQAGKYNDLINS 831
+ +T H V E L D ++ DGK+ G +++N+
Sbjct: 186 KDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229
|
Length = 243 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 27/208 (12%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH---- 1317
L+ +S P GE+ G++GR G+GKSTL++ L I P +G + + G SL+GL
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFN 96
Query: 1318 -DLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKV 1376
+L R + + G + L + DE+I E ++ +LGD +D V
Sbjct: 97 PELTGR------ENIYLNGRL-LGLSR--KEIDEKIDEIIEFSELGD-------FIDLPV 140
Query: 1377 TENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDC-TVL 1435
+ +S G + + IL++DE A D A Q+ LR+ TV+
Sbjct: 141 ----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVI 196
Query: 1436 TIAHRITSVID-SDLVLLLNHGLIEEFD 1462
++H +S+ D L+L G I
Sbjct: 197 LVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 56/215 (26%), Positives = 95/215 (44%), Gaps = 39/215 (18%)
Query: 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA--------YVAQS--- 689
L G + + G G+GK++LL ILG +P GT+K+ G YV Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 690 PWIQSGKIEDNILFGKE-----MNRER---YNAVLDACSLKKDLEILSFGDQTVIGERGI 741
W + ++ G+ + R + AV DA + + + D+ +GE
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDAL---RRVGLTELADRP-VGE--- 113
Query: 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS-----KTVI 796
LSGGQ+QR+ +ARAL + L D+PF+ +D T QE+L L ++
Sbjct: 114 -LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT-----QELLTELFIELAGAGTAIL 167
Query: 797 YVTHQ-VEFLPAADLILVMKDGKITQAGKYNDLIN 830
TH + + D ++++ +G++ G L +
Sbjct: 168 MTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (161), Expect = 2e-11
Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 12/212 (5%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322
L G+S + GE I+G+ GSGKST + + + E G++ IDG ++ + +LR +
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 1323 LSIIPQDP-VMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1381
+ ++ Q+P F G D + + Q + + DE LD K E
Sbjct: 83 IGMVFQNPDNQFVGATVE--DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPAR 140
Query: 1382 NWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ-----HFSDCTVLT 1436
S GQ+Q V + ++ R +I++LDE+T+ +D I + + + TVL+
Sbjct: 141 -LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL---TVLS 196
Query: 1437 IAHRITSVIDSDLVLLLNHGLIEEFDNPANLL 1468
I H + SD +L++ G I + P+ L
Sbjct: 197 ITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 54/211 (25%), Positives = 103/211 (48%), Gaps = 23/211 (10%)
Query: 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG-LHD 1318
L L ++ GE I+GR GSGKST+ + + ++ P+ G++ +DG+D S L D
Sbjct: 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82
Query: 1319 LRSRLSIIPQDP------VMFEGTVR---SNLDPLEESTDEQIWEALDKCQLGDEVRKKE 1369
+R++ ++ Q+P + E V NL E E++ E+L K + E R+
Sbjct: 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY-EYRRHA 141
Query: 1370 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ-- 1427
L S GQ+Q V + +L R + ++ DE TA +D + + T+++
Sbjct: 142 PHL----------LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELN 191
Query: 1428 HFSDCTVLTIAHRITSVIDSDLVLLLNHGLI 1458
T++ I H + +++D +++++ G +
Sbjct: 192 KKYGITIILITHYMEEAVEADRIIVMDSGKV 222
|
Length = 280 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-11
Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 45/222 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK---ISGTLKLCGTK--------- 683
LK+++ G +AV G+ G+GK++L++ + PK SG++ L G
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAI 100
Query: 684 -AYVAQSP-WIQSGKIEDNILF----------GKEMNRERYNAVLDACSLKKDLEILSFG 731
AYV Q +I + + ++++F K+ RER + VL A L+K
Sbjct: 101 SAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK-------C 153
Query: 732 DQTVIGERGI--NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789
T IG G LSGG+++R+ A L D + D+P S +D+ + Q VL GL
Sbjct: 154 ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQ-VLKGL 212
Query: 790 -LSSKTVIYVTHQVEFLPAADL------ILVMKDGKITQAGK 824
KT+I HQ P+++L I++M +G++ G
Sbjct: 213 AQKGKTIICTIHQ----PSSELFELFDKIILMAEGRVAYLGS 250
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 2e-11
Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 28/192 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSL---LSCILGEVP--KISGTLKLCGTK------- 683
LK+INL + A+ G G GKS+ L+ ++ VP K++G + G+
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 684 --------AYVAQ--SPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQ 733
V Q +P+ QS I DN+ +G ++ + L +K L+ ++ D+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQS--IFDNVAYGPRIHGTKNKKKLQEIV-EKSLKDVALWDE 144
Query: 734 TV--IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS 791
+ + ++LSGGQ+QR+ IARAL + D+ L D+P SA+D + +E++L L
Sbjct: 145 VKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDP-VSTRKIEELILKLKE 203
Query: 792 SKTVIYVTHQVE 803
T++ VTH ++
Sbjct: 204 KYTIVIVTHNMQ 215
|
Length = 259 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 3e-11
Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 22/235 (9%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
VL+ IS G+ + G TGSGKS+L+ + +EP+ G+I G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDK-CQLGDEVRKKEGKLDSKVTENG 1380
R+S PQ + GT++ N+ S DE + ++ K CQL +++ K + + E G
Sbjct: 488 RISFSPQTSWIMPGTIKDNI-IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG 546
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI-QQTLRQHFSDCTVLTIAH 1439
S GQR + L R + K + + +LD +D T+ I + L + S+ T + +
Sbjct: 547 ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTS 606
Query: 1440 RITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSFENLA 1494
++ + +D +LLL+ G + F + L+ K FS L L +F+N +
Sbjct: 607 KLEHLKKADKILLLHEG-VCYFYGTFSELQAKRPDFSSL-----LLGLEAFDNFS 655
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 3e-11
Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 41/213 (19%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322
L+G++ T GE ++G +G GKSTL+ + + +P +G ++++G I+ G
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG------- 53
Query: 1323 LSIIPQDPVMFEG-------TVRSN--------LDPLEESTDEQIWEA-LDKCQLGDEVR 1366
P V+F+ TVR N L L +S I E + L +
Sbjct: 54 ----PDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD 109
Query: 1367 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR 1426
K+ G+L S G +Q V + R L R K+L+LDE ++D T +Q+ L
Sbjct: 110 KRPGQL-----------SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELM 158
Query: 1427 QHFSD--CTVLTIAHRI-TSVIDSDLVLLLNHG 1456
Q + + TVL + H + +++ SD V++L +G
Sbjct: 159 QIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 3e-11
Identities = 53/244 (21%), Positives = 112/244 (45%), Gaps = 25/244 (10%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----P 1299
K++ +L + Y + L I+ + T ++G +G GKST ++ L R+ +
Sbjct: 4 KMESKNLNLWYGEKQ--ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61
Query: 1300 AAGQILIDGIDI--SLIGLHDLRSRLSIIPQDPVMFEGTVRSNL--DPL------EESTD 1349
G++L+DG +I + + +LR R+ ++ Q P F ++ N+ P ++ D
Sbjct: 62 IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELD 121
Query: 1350 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEA 1409
+ + AL K L DEV+ + ++ S GQ+Q +C+ R + + ++++DE
Sbjct: 122 KIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEP 174
Query: 1410 TASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468
T+++D + I+ + + + T++ + H + SD G + EF+ +
Sbjct: 175 TSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234
Query: 1469 ENKS 1472
Sbjct: 235 LEPQ 238
|
Length = 251 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-11
Identities = 74/288 (25%), Positives = 129/288 (44%), Gaps = 45/288 (15%)
Query: 603 PDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSL 662
+ P S A+D+ + S+ + ++ V G + G G+GKS++
Sbjct: 27 SEAKASIPGSMSTVAIDLAGVSKSY---GDKAVVNGLSFTVASGECFGLLGPNGAGKSTI 83
Query: 663 LSCILGEVPKISGTLKLCG----TKAYVAQS-----PWIQSGKIE----DNIL-FGK--E 706
ILG +G + + G +A +A++ P + +E +N+L FG+
Sbjct: 84 ARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG 143
Query: 707 MNRERYNAVLDACSLKKDLEILSFGD-QTVIGERGINLSGGQKQRIQIARALYQDSDIYL 765
M+ AV+ + +L F ++ R +LSGG K+R+ +ARAL D + +
Sbjct: 144 MSTREIEAVIPS--------LLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLI 195
Query: 766 FDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPAA----DLILVMKDGKIT 820
D+P + +D H HL E L LL+ KT++ TH F+ A D + V++ G+
Sbjct: 196 LDEPTTGLDPH-ARHLIWERLRSLLARGKTILLTTH---FMEEAERLCDRLCVLEAGRKI 251
Query: 821 QAGKYNDLINS--GTDFMELVGAHEQALLALGSIEGRPASER--ASGE 864
G+ + LI+ G +E+ G L +L +P + R SGE
Sbjct: 252 AEGRPHALIDEHIGCQVIEIYGGDPHELSSL----VKPYARRIEVSGE 295
|
Length = 340 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 3e-11
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 20/156 (12%)
Query: 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LHDLRSRLSIIPQD 1329
GE +VG +GSGKST + L R+VE G+I+ +G I + L LR + I QD
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 1330 PVMFEGTVRSNLDPLEESTDEQIWEALDKCQL--GDEVRKKEGKLDSKVTENGEN----- 1382
P ++LDP ++ + I E L L G + L +V E+
Sbjct: 410 PY-------ASLDP-RQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP 461
Query: 1383 --WSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA 1416
+S GQRQ +C+ R L K+++ DEA +++D +
Sbjct: 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVS 497
|
Length = 623 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-11
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 40/207 (19%)
Query: 650 AVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------TK-----------AYVAQS--- 689
A+ G GSGK+SL++ I G G ++L G K YV Q
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87
Query: 690 -PWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748
P + N+ +G + +L G + ++ LSGG+K
Sbjct: 88 FPHY---TVRGNLRYGMWKSMRAQFD--QLVAL--------LGIEHLLDRYPGTLSGGEK 134
Query: 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKT---VIYVTHQV-EF 804
QR+ I RAL ++ L D+P +++D + L L + ++YV+H + E
Sbjct: 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKREILP--YLERLRDEINIPILYVSHSLDEV 192
Query: 805 LPAADLILVMKDGKITQAGKYNDLINS 831
L AD ++V+++GK+ +G ++ S
Sbjct: 193 LRLADRVVVLENGKVKASGPLEEVWGS 219
|
Length = 352 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 4e-11
Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 41/195 (21%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
LK +N G +A+ G G+GKS+LL + G + SG + + G
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 684 ---AYVAQSPWIQ--SGKIEDNILFGKEMN--------RERYNAVLDACSLKKDLEILSF 730
V Q P Q + ++ ++ FG +N R L A L
Sbjct: 68 QRVGLVFQDPDDQLFAADVDQDVAFGP-LNLGLSEAEVERRVREALTAVGA-SGLR---- 121
Query: 731 GDQTVIGERGIN-LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789
ER + LSGG+K+R+ IA A+ D+ L D+P + +D G +L L
Sbjct: 122 -------ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP-AGREQMLAILRRL 173
Query: 790 LSS-KTVIYVTHQVE 803
+ TV+ TH V+
Sbjct: 174 RAEGMTVVISTHDVD 188
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (157), Expect = 4e-11
Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 25/189 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSC---ILGEVPKISGTLKLCGTK--------- 683
L DIN+++ A+ G G GKS+ L C + ++ KI G +++ G
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 684 ----AYVAQSPWIQSGKIEDNI-----LFGKEMNRERYNAVLDACSLKKDLEILSFGDQT 734
V Q P + I +NI L G N++ A++ C L+K D+
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDC-LQKVGLFEEVKDK- 135
Query: 735 VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKT 794
+ + + LSGGQ+QR+ IARAL + L D+P SA+D S + +E+L L + +
Sbjct: 136 -LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEELLKELSHNLS 193
Query: 795 VIYVTHQVE 803
+I VTH ++
Sbjct: 194 MIMVTHNMQ 202
|
Length = 246 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 4e-11
Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 38/213 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ-- 693
LK ++L + G + A+ G G+GKS+LL + G G +K+ G + W++
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
Query: 694 -------------SGKIEDNILFG--------KEMNRERYNAVLDACSLKKDLEILSFGD 732
S + D++ FG E+ R R L A + F D
Sbjct: 81 VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVER-RVEEALKAVRMWD------FRD 133
Query: 733 QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS 792
+ +LS GQK+R+ IA L D D+ + D+P + +D G E+L L +
Sbjct: 134 KP-----PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP-RGQETLMEILDRLHNQ 187
Query: 793 -KTVIYVTHQVEF-LPAADLILVMKDGKITQAG 823
KTVI TH V+ AD ++V+K+G++ G
Sbjct: 188 GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 4e-11
Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 38/235 (16%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG------------- 1308
VL G++ + GEK ++G +GSGKST+++ L + GQI ++G
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 1309 IDISLIGLHDLRSRLSIIPQDPVMF----------EGTVRSNLDPLEESTDEQIWEALDK 1358
+ L +R+++ ++ Q +F E V E+ + E LD
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAM-ELLDM 133
Query: 1359 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD 1418
L D+ +L S GQ+Q V + R L R K+++ DE T+++D
Sbjct: 134 VGLADKADHMPAQL-----------SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182
Query: 1419 NLIQQTLRQ--HFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470
+ +R+ D T+L + H + + +D V + G I E P +
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 5e-11
Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 32/220 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
+KD +L + G + G GSGKS+++ + + G + + G
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 684 -----AYVAQS-PWIQSGKIEDNILFGKEMN----RERYNAVLDACSLKKDLEILSFGDQ 733
A V QS + + DN FG E+ ER LDA + LE +
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALR-QVGLENYAHSYP 162
Query: 734 TVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-LGLLSS 792
LSGG +QR+ +ARAL + DI L D+ FSA+D + + E++ L
Sbjct: 163 D-------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215
Query: 793 KTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDLINS 831
+T+++++H + E + D I +M++G++ Q G ++++N+
Sbjct: 216 RTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255
|
Length = 400 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (157), Expect = 5e-11
Identities = 51/196 (26%), Positives = 93/196 (47%), Gaps = 26/196 (13%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG--------IDISLI 1314
++GIS + T I+G +G GKST I+TL RI E G + ++G I I
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE-LEGPVKVEGVVDFFGQNIYDPRI 81
Query: 1315 GLHDLRSRLSIIPQDPVMFEGTVRSNL---------DPLEESTDEQIWEALDKCQLGDEV 1365
++ LR ++ ++ Q P F ++ N+ P + DE + AL L EV
Sbjct: 82 NINRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQAD-LDEIVESALKGAALWQEV 140
Query: 1366 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTL 1425
+ K+ ++ S GQ+Q +C+ R L + K+L++DE +++D +++ +
Sbjct: 141 K-------DKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELI 193
Query: 1426 RQHFSDCTVLTIAHRI 1441
S+ T+ + H +
Sbjct: 194 HSLRSELTIAIVTHNM 209
|
Length = 259 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 5e-11
Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 26/208 (12%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---L 1319
LQG++ GE + G +G+GKSTL++ + I P+AG+I G DI+ + + L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 1320 RSRLSIIPQD-PVMFEGTVRSNLD-PL------EESTDEQIWEALDKCQLGDEVRKKEGK 1371
R ++ +I QD ++ + TV N+ PL + ++ ALDK L D+ + +
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQ 137
Query: 1372 LDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS- 1430
L S G++Q V + R ++ + +L+ DE T ++D A I + L + F+
Sbjct: 138 L-----------SGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR-LFEEFNR 185
Query: 1431 -DCTVLTIAHRITSVIDSDL-VLLLNHG 1456
TVL H I + +L L+ G
Sbjct: 186 VGVTVLMATHDIGLISRRSYRMLTLSDG 213
|
Length = 222 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 5e-11
Identities = 53/235 (22%), Positives = 113/235 (48%), Gaps = 32/235 (13%)
Query: 1268 CTFPGGEKTGIVGRTGSGKSTLIQTLFR---IVEPAA--GQILIDGIDI--SLIGLHDLR 1320
C P G+ T ++G +G GKST++++L R ++E + G++L DG D+ + ++R
Sbjct: 34 CDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVR 93
Query: 1321 SRLSIIPQDPVMFEGTVRSNL------DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDS 1374
R+ ++ Q P F ++ N+ + DE + +L K + DE +
Sbjct: 94 RRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------D 146
Query: 1375 KVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTV 1434
K+ E+G + S GQ+Q +C+ R + +++++DE +++D + I++T+ + + T+
Sbjct: 147 KLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTI 206
Query: 1435 LTIAHRITSVID-SDLVLLLNH-----------GLIEEFDNPANLLENKSSSFSQ 1477
+ + H + + SD+ N G + EF+ + + +Q
Sbjct: 207 VIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFNSPKQKATQ 261
|
Length = 269 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 5e-11
Identities = 72/220 (32%), Positives = 103/220 (46%), Gaps = 50/220 (22%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSL---LSCIL----GEVPKISGT---------LKL 679
LK IN K G VA+ G G+GKS+L + IL GEV I G L++
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV-LIKGEPIKYDKKSLLEV 76
Query: 680 CGTKAYVAQSPWIQ--SGKIEDNILFGKEMN-----RERYNAVLDACSLKKDLEILSFGD 732
T V Q+P Q + +E+++ FG +N E V +A LK
Sbjct: 77 RKTVGIVFQNPDDQLFAPTVEEDVAFGP-LNLGLSKEEVEKRVKEA--LKA--------- 124
Query: 733 QTVIGERGI------NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786
+G G +LSGGQK+R+ IA L +I + D+P S +D S + + L
Sbjct: 125 ---VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMK--L 179
Query: 787 LGLLSSK--TVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823
L L+ + T+I TH V+ +P AD + VM DGKI + G
Sbjct: 180 LYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 6e-11
Identities = 67/232 (28%), Positives = 105/232 (45%), Gaps = 26/232 (11%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG- 1308
DL RY Q VL+G++ F TG+VG G GKSTL L ++ P G +L G
Sbjct: 6 DLWFRY--QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK 63
Query: 1309 -IDISLIGLHDLRSRLSIIPQDP--VMFEGTVRS-------NLDPLEESTDEQIWEALDK 1358
+D S GL LR +++ + QDP +F + S NL E ++ EAL
Sbjct: 64 PLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEAL-- 121
Query: 1359 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD 1418
L D + + + S GQ++ V + L+ +++ L+LDE TA +D A
Sbjct: 122 -TLVDAQHFRHQPI--------QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172
Query: 1419 NLIQQTLRQHFSDCTVLTI-AHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468
+ +R+ + + I +H I + + SD V +L G I P +
Sbjct: 173 TQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
|
Length = 271 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 6e-11
Identities = 64/269 (23%), Positives = 119/269 (44%), Gaps = 18/269 (6%)
Query: 562 IATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIV 621
+ L+ P+ + ++ ++ +V+ +IA L + D Q +T L++
Sbjct: 269 VLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKL-ELAPYKADFPRPQAFPDWKT-LELR 326
Query: 622 DGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681
+ F++ + + INL + G V + G GSGKS+L + G SG + L G
Sbjct: 327 NVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384
Query: 682 TKAYVAQSP----WIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIG 737
A+ + S D LF + + E + +K L+ L +T +
Sbjct: 385 KPV-SAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLI---EKWLQRLELAHKTSLN 440
Query: 738 ERGI---NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS-- 792
+ LS GQK+R+ + AL ++ DI + D+ + D F +VLL LL
Sbjct: 441 DGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAF-RREFYQVLLPLLKEQG 499
Query: 793 KTVIYVTHQVEFLPAADLILVMKDGKITQ 821
KT+ ++H + AD +L M++G++++
Sbjct: 500 KTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 6e-11
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 28/192 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
L +IN+K+ A+ G G GKS+ L + L E KI G + G Y
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC---SLKKDLEILSFGD 732
V Q+P I DNI +G +++ + LD SLKK D
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD 142
Query: 733 QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA-HTGSHLFQEVLLGLLS 791
+ + ++LSGGQ+QR+ IAR L + ++ L D+P SA+D TG +E+++ L
Sbjct: 143 K--LNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGK--IEELIINLKE 198
Query: 792 SKTVIYVTHQVE 803
S T+I VTH ++
Sbjct: 199 SYTIIIVTHNMQ 210
|
Length = 254 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 7e-11
Identities = 57/219 (26%), Positives = 91/219 (41%), Gaps = 51/219 (23%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTKAYVAQSPWI 692
LK ++L + G VA+ G+ GSGKS+LL +LG + P SG + G ++ S
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLH-LLGGLDNPT-SGEVLFNG-QSLSKLS--- 73
Query: 693 QSGKIED--NILFG----------------------------KEMNRERYNAVLDACSLK 722
S + N G + +ER +L+ L+
Sbjct: 74 -SNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE 132
Query: 723 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLF 782
+ R LSGG++QR+ IARAL + L D+P +D + +F
Sbjct: 133 HRIN-----------HRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF 181
Query: 783 QEVL-LGLLSSKTVIYVTHQVEFLPAADLILVMKDGKIT 820
+L L + + + VTH +E D +L MKDG++
Sbjct: 182 DLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 7e-11
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 23/180 (12%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
++ DL+ Y P L+GI+ GE ++G G+GKSTL I++P +G++L
Sbjct: 2 LETRDLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 1306 IDG--IDISLIGLHDLRSRLSIIPQDP--VMFEGTVRS-------NLDPLEESTDEQIWE 1354
I G I L ++R + I+ Q+P +F TV NL +E ++++ E
Sbjct: 61 IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKE 120
Query: 1355 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
AL + K L S GQ++ V + +L + +I++LDE T+ +D
Sbjct: 121 ALKAVGMEGFENKPPHHL-----------SGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
|
Length = 275 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 7e-11
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 29/219 (13%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322
++G+S GE G++G G+GK+T I+ L +++P +G+ + G D+ + ++R R
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV-VREPREVRRR 74
Query: 1323 LSIIPQDPVMFEG-TVRSNLD--------PLEESTDEQIWEALDKCQLGDEVRKKEGKLD 1373
+ I+ QD + + T NL P E E+I E LD L E + K
Sbjct: 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAER-RERIDELLDFVGLL-EAADRLVK-- 130
Query: 1374 SKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN----LIQQTLRQHF 1429
+S G R+ + + R L+ R ++L LDE T +D T I++ +
Sbjct: 131 --------TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF- 181
Query: 1430 SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANL 1467
T+L H + D V +++HG I P L
Sbjct: 182 -GMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 9e-11
Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 32/223 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------TK------ 683
+ D+N + G A+ G GSGKS+L+ I + +GT+ + TK
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 684 -----AYVAQSPWIQ--SGKIEDNILFG-KEMNRERYNAVLDACSLKKDLEILSFG-DQT 734
V Q P Q +E I+FG K A L ++ G +
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRL-----LMDLGFSRD 137
Query: 735 VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSH---LFQEVLLGLLS 791
V+ + +SGGQ ++I I L + DI + D+P + +D + L + L
Sbjct: 138 VMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS--LQTDE 195
Query: 792 SKTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDLINSGT 833
+KT+I V+H + E AD ++VMK+G I +L
Sbjct: 196 NKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 1e-10
Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 45/237 (18%)
Query: 629 ISSHNPTLKDINLKVFHGMRV--------AVCGTVGSGKSSLLSCIL---GEVP--KISG 675
IS+ + L N + HG+ + A+ G G GKS+ L C+ ++ KI+G
Sbjct: 5 ISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITG 64
Query: 676 TLKLCGTKAY---------------VAQSPWIQSGKIEDNILFG--------KEMNRERY 712
+K G Y V Q P + DN+ +G KE+ +R
Sbjct: 65 EIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRV 124
Query: 713 NAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSA 772
L ++ K+ + + SGGQ+QRI IARAL + L D+P SA
Sbjct: 125 EESLKQAAIWKE-------TKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSA 177
Query: 773 VDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDL 828
+D + S + +E L+ L T I VTH ++ +D + +G + +AG ++
Sbjct: 178 LDPISSSEI-EETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 7/194 (3%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 691
L DI+L V G G G+GK++ + ILG + SG + G
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL 71
Query: 692 IQSGK-IEDNILFGKEMNRE--RYNAVLDACSLKKDLEILSFGDQTVIGERGI-NLSGGQ 747
+ G IE + RE R A L K+ E+L ++ + S G
Sbjct: 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGM 131
Query: 748 KQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS-KTVIYVTHQV-EFL 805
KQR+ IA AL + D+ + D+P + +D G +E++L L TV+ +H + E
Sbjct: 132 KQRLGIALALLGNPDLLILDEPTNGLDP-DGIKELRELILSLRDQGITVLISSHLLSEIQ 190
Query: 806 PAADLILVMKDGKI 819
AD I ++ GK+
Sbjct: 191 KVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 49/193 (25%), Positives = 97/193 (50%), Gaps = 25/193 (12%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG-----QILIDGIDI-SLIGL 1316
L+ I+ P + T ++G +G GKSTL++ L R+ + G ++ +DG DI I +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 1317 HDLRSRLSIIPQDPVMFEGTVRSNL----------DPLEESTDEQIWEALDKCQLGDEVR 1366
DLR ++ ++ Q P F ++ N+ D ++ DE + +L L DEV+
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKD--KKVLDEVVERSLRGAALWDEVK 136
Query: 1367 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR 1426
+ L S + S GQ+Q +C+ R + ++++DE T+++D + I++ +
Sbjct: 137 DR---LKS----HAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELME 189
Query: 1427 QHFSDCTVLTIAH 1439
+ + T++ + H
Sbjct: 190 ELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-10
Identities = 68/257 (26%), Positives = 113/257 (43%), Gaps = 64/257 (24%)
Query: 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325
+S T GE ++G +G GKSTL++ L +P AGQI++DG+D+S + +
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY-------- 89
Query: 1326 IPQDPV--MFEG-------TVRSNLD--------PLEESTDEQIWEALDKCQLGDEVRKK 1368
Q P+ MF+ TV N+ P E ++ E L + + ++K
Sbjct: 90 --QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-RVNEMLGLVHMQEFAKRK 146
Query: 1369 EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ----QT 1424
+L S GQRQ V L R L KR K+L+LDE ++D + +Q
Sbjct: 147 PHQL-----------SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDI 195
Query: 1425 LRQHFSDCTV--------LTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFS 1476
L + C + +T+A RI ++N G + P + E+ ++ +S
Sbjct: 196 LERVGVTCVMVTHDQEEAMTMAGRIA---------IMNRGKFVQIGEPEEIYEHPTTRYS 246
Query: 1477 QLVAEYTLRSSSSFENL 1493
AE+ + S + FE +
Sbjct: 247 ---AEF-IGSVNVFEGV 259
|
Length = 377 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 63/239 (26%), Positives = 96/239 (40%), Gaps = 54/239 (22%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI---GLHD 1318
VL +S + GE ++GR+G GKSTL + L + P+ G + G ++ +
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 1319 LRSRLSIIPQDP---VMFEGTVRSNLD-PLEESTD-------EQIWEALDKCQLGDEV-R 1366
R + ++ QD V TVR + PL + E L L D V
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD 146
Query: 1367 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR 1426
K+ +L S GQ Q VCL R L K+L+LDEA +++D + + L+
Sbjct: 147 KRPPQL-----------SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLK 195
Query: 1427 --QHFSDCTVLTIAHRITSVIDSDL---------VLLLNHGLIEE---------FDNPA 1465
Q L I H DL V+++++G I E F +PA
Sbjct: 196 KLQQQFGTACLFITH--------DLRLVERFCQRVMVMDNGQIVETQPVGDKLTFSSPA 246
|
Length = 268 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 62/212 (29%), Positives = 95/212 (44%), Gaps = 30/212 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL------CGTKA----- 684
L D+N+ + G VA+ G GSGKS+LL + G + SGT+ + G K
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 685 ------YVAQSPWIQ--SGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSF-G-DQT 734
V Q P Q +E +I FG MN V + + +K E++ G +
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFGP-MNF----GVSEEDAKQKAREMIELVGLPEE 137
Query: 735 VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK- 793
++ LSGGQ +R+ IA L + ++ + D+P + +D G E+ L K
Sbjct: 138 LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GRKEMMEMFYKLHKEKG 196
Query: 794 -TVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823
T + VTH +E AD I+VM G + G
Sbjct: 197 LTTVLVTHSMEDAARYADQIVVMHKGTVFLQG 228
|
Length = 290 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 2e-10
Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 21/231 (9%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL------GEVPKISG------TLKLC 680
L+D++ V G RV + G GSGKS+LLS +L GE+ +I G TL+
Sbjct: 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEI-QIDGVSWNSVTLQTW 1290
Query: 681 GTKAY--VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQT--VI 736
KA+ + Q +I SG N+ ++ + E V + LK +E F D+ V+
Sbjct: 1291 -RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIE--QFPDKLDFVL 1347
Query: 737 GERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVI 796
+ G LS G KQ + +AR++ + I L D+P + +D T + ++ L S+ TVI
Sbjct: 1348 VDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT-LQIIRKTLKQSFSNCTVI 1406
Query: 797 YVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQALL 847
H+VE L LV++ + Q L+N + F + + A ++ L
Sbjct: 1407 LSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRLKL 1457
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 49/208 (23%), Positives = 81/208 (38%), Gaps = 38/208 (18%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L+ +S T GE ++G +G GK+TL+ + V P+ G I ++G I G +
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----A 74
Query: 1322 RLSIIPQDPVMFEG-TVRSN---------LDPLEESTDEQIWEALDKCQLGDEVRKKEGK 1371
++ Q+ + V N ++ + E + L L K +
Sbjct: 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRR--EIAHQMLALVGLEGAEHKYIWQ 132
Query: 1372 LDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTL-----R 1426
L S G RQ V + R L ++L+LDE ++D T +Q+ L
Sbjct: 133 L-----------SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE 181
Query: 1427 QHFSDCTVLTIAHRITS--VIDSDLVLL 1452
VL I H I + + LV+L
Sbjct: 182 TGKQ---VLLITHDIEEALFLATRLVVL 206
|
Length = 259 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 36/220 (16%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSC---ILGEVP--KISGTLKLCGTKAY-- 685
L DINL ++ A G G GKS+ L C + VP K+ G L + G Y
Sbjct: 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSV 77
Query: 686 -------------VAQSPWIQSGKIEDNILFGKEM-----NRERYNAVLDACSLKKDLEI 727
V Q P I DN+ +G ++ N+++ + +++ SL
Sbjct: 78 DTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEK-SLTSVGLW 136
Query: 728 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGS---HLFQE 784
GD+ + + LSGGQ+QR+ IARA+ + L D+P SA+D + +L QE
Sbjct: 137 EELGDR--LKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
Query: 785 VLLGLLSSKTVIYVTHQV-EFLPAADLILVMKDGKITQAG 823
+ T+I VTH + + +D + + G+I +
Sbjct: 195 LKKNF----TIIVVTHSMKQAKKVSDRVAFFQSGRIVEYN 230
|
Length = 251 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 61/228 (26%), Positives = 96/228 (42%), Gaps = 43/228 (18%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-- 681
+ + S L +IN R+AV G G+GKS+L G + SG++ + G
Sbjct: 8 DLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEP 67
Query: 682 -TKA----------YVAQSP--WIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEIL 728
TK V Q+P I S +E +I FG +L D E +
Sbjct: 68 ITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG-------------PINLGLDEETV 114
Query: 729 SFGDQTVIGERGI---------NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGS 779
+ + + G+ +LSGG+K+R+ IA + + + + D+P + +D
Sbjct: 115 AHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVK 174
Query: 780 HLFQEVLLGLLSSK---TVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823
L L L TVI+ THQ++ +P AD I VM G+I G
Sbjct: 175 ELID--FLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 24/244 (9%)
Query: 1242 SHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE--- 1298
+ +I + +L + Y + L+ +S P T ++G +G GKST I+ L R+ +
Sbjct: 9 AQPQIKVENLNLWYGEKQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIK 66
Query: 1299 --PAAGQILIDGIDISLIGLH--DLRSRLSIIPQDPVMFEGTVRSNL-------DPLEES 1347
G++ I+G DI + +LR + ++ Q P F ++ N+ ++
Sbjct: 67 NCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKD 126
Query: 1348 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLD 1407
D + AL L DE ++ + S GQ+Q +C+ R L + KI++ D
Sbjct: 127 LDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFD 179
Query: 1408 EATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPAN 1466
E T+++D + I+ + D T++ + H + SD G + EF
Sbjct: 180 EPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239
Query: 1467 LLEN 1470
+ N
Sbjct: 240 IFHN 243
|
Length = 258 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 26/190 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
+K++ L + A G G GKS++L C L ++ G + G Y
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
V Q P I DNI +G +N Y +D +++ L + D+
Sbjct: 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARING--YKGDMDEL-VERSLRQAALWDEVK 142
Query: 736 --IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793
+ + G++LSGGQ+QR+ IARA+ ++ L D+P SA+D + +E++ L
Sbjct: 143 DKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDP-ISTLRIEELMHELKEQY 201
Query: 794 TVIYVTHQVE 803
T+I VTH ++
Sbjct: 202 TIIIVTHNMQ 211
|
Length = 264 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 61/224 (27%), Positives = 105/224 (46%), Gaps = 33/224 (14%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGT 682
N + L DI L G + + G G+GKSSLL + L E+P+ SGTL + G
Sbjct: 9 NCFYGAHQ---ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGN 64
Query: 683 KAYVAQSPWIQSG-KIEDNILFGKEMNRERYN-----AVLD--------------ACSLK 722
+++P ++ ++ N+ M ++YN V +L
Sbjct: 65 HFDFSKTPSDKAIRELRRNV----GMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA 120
Query: 723 KDLEILSFGDQTVIGER-GINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL 781
+ ++L +R ++LSGGQ+QR+ IARAL + + LFD+P +A+D + +
Sbjct: 121 RAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180
Query: 782 FQEVLLGLLSSK-TVIYVTHQVEFL-PAADLILVMKDGKITQAG 823
++ L + T + VTH+VE A ++ M++G I + G
Sbjct: 181 V-SIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (151), Expect = 2e-10
Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 34/205 (16%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG--------IDISL 1313
+L+G+S + T I+G +G GKST ++ L R+ E ++ ++G I
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIYERR 80
Query: 1314 IGLHDLRSRLSIIPQDPVMFEGTVRSNL---------DPLEESTDEQIWEALDKCQLGDE 1364
+ L+ LR ++S++ P +F +V N+ P E D+ + AL L DE
Sbjct: 81 VNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLE-IDDIVESALKDADLWDE 139
Query: 1365 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT----DNL 1420
++ K+ ++ + S GQ+Q +C+ R L + K+L++DE +D ++L
Sbjct: 140 IK-------HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESL 192
Query: 1421 IQQ-TLRQHFSDCTVLTIAHRITSV 1444
IQ LR S+ T++ ++H + V
Sbjct: 193 IQSLRLR---SELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 3e-10
Identities = 57/185 (30%), Positives = 87/185 (47%), Gaps = 14/185 (7%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
ID +++ RY + LV+ G+S GE G++G G+GK+T ++ L + P AG I
Sbjct: 8 IDFRNVEKRYGDK--LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQ----DPVMFEGTVRSNLDPLEESTDEQIWEALDKCQL 1361
+ G + H R R+ ++PQ DP + TVR NL A
Sbjct: 66 LCGEPVPSRARH-ARQRVGVVPQFDNLDP---DFTVRENLLVFGRYFGLSAAAARALVPP 121
Query: 1362 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI 1421
E K E K D+KV E S G ++ + L R L+ +L+LDE T +D +L+
Sbjct: 122 LLEFAKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM 177
Query: 1422 QQTLR 1426
+ LR
Sbjct: 178 WERLR 182
|
Length = 306 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (152), Expect = 3e-10
Identities = 63/241 (26%), Positives = 108/241 (44%), Gaps = 28/241 (11%)
Query: 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
L++ + F ++ S L ++ + G V++ G GSGKS+ I G + G +
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 678 KLCGTK-------------AYVAQSPWIQ--SGKIEDNILFGKE---MNRERYNAVLDAC 719
K+ G V Q+P Q +ED++ FG E + RE +D
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 720 SLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGS 779
L + +L F + LSGGQKQR+ +A + +I + D+ S +D TG
Sbjct: 125 LLA--VNMLDFKTR-----EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP-TGR 176
Query: 780 HLFQEVLLGLLSSK--TVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFME 837
V+ + TV+ +TH ++ ++D ILVMK G+I + ++L + D +E
Sbjct: 177 QEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVE 236
Query: 838 L 838
+
Sbjct: 237 I 237
|
Length = 277 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-10
Identities = 109/470 (23%), Positives = 194/470 (41%), Gaps = 49/470 (10%)
Query: 1008 IFRAPMSFFDATPSGRIINRASTDQ---SAADLGIPSLVGAYAFSIIRILGTIAVMSQVA 1064
I P+ + S R++ ++D S A +P LV A II LG+ A ++ ++
Sbjct: 91 ILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQA----IILTLGSAAYLAYLS 146
Query: 1065 WQVFIVFVPAVGSCIWYQQY-------YISSARELSRLVGVCKAPVIQHFAETVSGST-- 1115
++F++ V + IW ++++ARE + + + + G
Sbjct: 147 PKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARET-------EDKLQNDYQTILEGRKEL 199
Query: 1116 TIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITF--AFTLVFLISI 1173
T+ E + + EY HI A + L ++ S+I LVF +++
Sbjct: 200 TLNRERAEYVHNNLYIPDAQEYRH---HIIRANTFHLLAVN-WSNIMLLGLIGLVFWLAL 255
Query: 1174 PKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEE 1233
G+ +A T L L L L+ L +++ + F P +
Sbjct: 256 SLGWASTN---VAATIVLVLLFLRTPLLSAVGILPT-LLTAQVAFNKIAKLELAPYKADF 311
Query: 1234 SRPNDSWPSHGKIDLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQT 1292
RP ++P ++L + VR+A Q + I+ T GE ++G GSGKSTL
Sbjct: 312 PRPQ-AFPDWKTLELRN--VRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAML 368
Query: 1293 LFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQI 1352
L + +P +G+IL+DG +S L D R S + D +F+ + + ++
Sbjct: 369 LTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEK-- 426
Query: 1353 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATAS 1412
W L + +L + +G+ + S GQ++ + L LL+ IL+LDE A
Sbjct: 427 W--LQRLELAHKTSLNDGRFSNL------KLSTGQKKRLALLLALLEERDILVLDEWAAD 478
Query: 1413 VDTATDNLIQQTLRQHFSDC--TVLTIAHRITSVIDSDLVLLLNHGLIEE 1460
D A Q L + T+ I+H I +D +L + +G + E
Sbjct: 479 QDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 3e-10
Identities = 55/215 (25%), Positives = 102/215 (47%), Gaps = 32/215 (14%)
Query: 1276 TGIVGRTGSGKSTLIQTLFR---IVE--PAAGQILIDGIDI--SLIGLHDLRSRLSIIPQ 1328
T ++G +G GKST ++TL R +VE G ++ +G +I + + +LR ++ ++ Q
Sbjct: 36 TALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQ 95
Query: 1329 DPVMFEGTVRSNLD--------PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380
P F ++ N+ ++ DE + ++L K L +EV+ K+ N
Sbjct: 96 TPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNA 148
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHR 1440
+ S GQ+Q +C+ R L ++++DE T+++D + I++ + T++ + H
Sbjct: 149 LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHN 208
Query: 1441 ITSV--IDSDLVLLLNHGLIEE-------FDNPAN 1466
+ I LN G IEE F NP N
Sbjct: 209 MQQAGRISDRTAFFLN-GCIEEESSTDELFFNPKN 242
|
Length = 254 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 3e-10
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 26/185 (14%)
Query: 1246 IDLLDLQVRYAPQMP---LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1302
I ++ RY + P L ++ + P G I+G TGSGKSTL+Q L +++P +G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 1303 QILIDGIDISL----IGLHDLRSRLSIIPQDP--VMFEGTVR-------SNLDPLEESTD 1349
+ I I+ L LR ++ I+ Q P +FE TV N EE
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAK 122
Query: 1350 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEA 1409
++ E ++ L +E+ + S +G GQ + V + VL ++L+LDE
Sbjct: 123 QKAREMIELVGLPEELLAR-----SPFELSG-----GQMRRVAIAGVLAMEPEVLVLDEP 172
Query: 1410 TASVD 1414
TA +D
Sbjct: 173 TAGLD 177
|
Length = 290 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 46/201 (22%), Positives = 89/201 (44%), Gaps = 39/201 (19%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI----DGIDISLIGLH 1317
VL+ +S T GE + G +G+GKSTL+++L+ P +G+IL+ +D++
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 1318 D---LRSR--------LSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVR 1366
+ +R + L +IP+ S L+ + E E+ + R
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPR---------VSALEVVAEPLLERGVPR-------EAAR 126
Query: 1367 KKEGKLDSKVTENGENWSM-------GQRQLVCLGRVLLKRSKILMLDEATASVDTATDN 1419
+ +L +++ W + G++Q V + R + IL+LDE TAS+D A
Sbjct: 127 ARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186
Query: 1420 LIQQTLRQ-HFSDCTVLTIAH 1439
++ + + + ++ I H
Sbjct: 187 VVVELIAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 3e-10
Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 69/176 (39%)
Query: 1278 IVGRTGSGKSTLIQTLF--------RIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQD 1329
I G +G+GKS+L + L RI P +L +PQ
Sbjct: 32 ITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF-------------------LPQR 72
Query: 1330 PVMFEGTVRSNLDPLEESTDEQI---WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1386
P + GT+R EQ+ W + S G
Sbjct: 73 PYLPLGTLR-----------EQLIYPW--------------------------DDVLSGG 95
Query: 1387 QRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRIT 1442
++Q + R+LL + K + LDEAT+++D +++ + Q L++ TV+++ HR +
Sbjct: 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG--ITVISVGHRPS 149
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 3e-10
Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 39/188 (20%)
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA--YVAQ 688
LKD++ ++ G R+ + G G+GKSSL + G P SG + + + ++ Q
Sbjct: 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQ 71
Query: 689 SPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748
P++ G +L+ E L + V LSGG++
Sbjct: 72 RPYLPLG------------------------TLR---EQLIYPWDDV-------LSGGEQ 97
Query: 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAA 808
QR+ AR L D+ SA+D + L+Q +L L TVI V H+
Sbjct: 98 QRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ-LLKELGI--TVISVGHRPSLWKFH 154
Query: 809 DLILVMKD 816
D +L +
Sbjct: 155 DRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-10
Identities = 71/265 (26%), Positives = 115/265 (43%), Gaps = 58/265 (21%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTL--FRIVEPAAGQIL-------------- 1305
VL+ IS T GE GI+GR+G+GKS L+ L EP +G+I+
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 1306 --------------IDGIDISLIGLHD-----LRSRLSIIPQDPVMFEG--TVRSN-LDP 1343
++ ++ L D +R R++I+ Q G TV N L+
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134
Query: 1344 LEE---STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1400
LEE E + A+D L + V +L ++T + S G++Q V L R L K
Sbjct: 135 LEEIGYEGKEAVGRAVD---LIEMV-----QLSHRITHIARDLSGGEKQRVVLARQLAKE 186
Query: 1401 SKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID--SDLVLLLNHG 1456
+ + DE T ++D T L+ L + S +++ +H VI+ SD + L +G
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH-WPEVIEDLSDKAIWLENG 245
Query: 1457 LIEEFDNPANLLENKSSSFSQLVAE 1481
I+E P + + F + V+E
Sbjct: 246 EIKEEGTP----DEVVAVFMEGVSE 266
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 4e-10
Identities = 56/222 (25%), Positives = 99/222 (44%), Gaps = 29/222 (13%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAY-------- 685
L ++L V G V + G G+GK++LL I G + +GT+ + G
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76
Query: 686 --VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKD---------LEILSFGDQT 734
VA P S E ++ EM R + + D + + F D+
Sbjct: 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP 136
Query: 735 VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKT 794
V +LSGG++QR+ +ARAL Q + + L D+P +++D + + V + KT
Sbjct: 137 VT-----SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKT 191
Query: 795 VIYVTHQVEFLPAA---DLILVMKDGKITQAGKYNDLINSGT 833
+ H ++ AA D ++++ DG++ AG D++ + T
Sbjct: 192 AVAAIHDLDL--AARYCDELVLLADGRVRAAGPPADVLTADT 231
|
Length = 402 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 29/182 (15%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----YVAQSPW 691
++ + G + + G GSGK++LL I G +P +GT+KL G +
Sbjct: 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHY 77
Query: 692 I--QSG-----KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLS 744
+ ++ + +N+ F + A + + G + LS
Sbjct: 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAA--------LEAVGLAPLAHLPFGYLS 129
Query: 745 GGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK-----TVIYVT 799
GQK+R+ +AR L + I++ D+P +A+DA + L+ + VI T
Sbjct: 130 AGQKRRVALARLLVSNRPIWILDEPTAALDAAA-----VALFAELIRAHLAQGGIVIAAT 184
Query: 800 HQ 801
H
Sbjct: 185 HI 186
|
Length = 207 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 4e-10
Identities = 57/231 (24%), Positives = 95/231 (41%), Gaps = 49/231 (21%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP----- 690
LK +NL V+ G A+ G G+GKS+L+ + G GT+ + Y
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINN-INYNKLDHKLAAQ 79
Query: 691 -----------WIQSGKIEDNILFG---------------KEMNRERYNAVLDACSLKKD 724
I + +N+ G +EM R R +L LK D
Sbjct: 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM-RVRAAMMLLRVGLKVD 138
Query: 725 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQE 784
L+ E+ NLS KQ ++IA+ L D+ + + D+P S++ +LF
Sbjct: 139 LD-----------EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF-- 185
Query: 785 VLLGLLSS--KTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDLINSG 832
+++ L ++Y++H++ E D VMKDG +G +D+ N
Sbjct: 186 LIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDD 236
|
Length = 510 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 4e-10
Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 37/192 (19%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304
++ L V +L+G+ GE IVG +GSGKSTL+ L + +P++G++
Sbjct: 8 EVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEV 67
Query: 1305 LIDGIDISLI---GLHDLRSR--------LSIIP--------QDPVMFEGTVRSNLDPLE 1345
+ G + + LR+R +IP P+ G + D
Sbjct: 68 RLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSA--DSRA 125
Query: 1346 ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILM 1405
+ L+ LG + +L S G++Q V L R R +L
Sbjct: 126 GAKAL-----LEAVGLGKRLTHYPAQL-----------SGGEQQRVALARAFAGRPDVLF 169
Query: 1406 LDEATASVDTAT 1417
DE T ++D AT
Sbjct: 170 ADEPTGNLDRAT 181
|
Length = 228 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 4e-10
Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 22/166 (13%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LHD 1318
V++ IS T GE G+VG +GSGKST L R++ + G+I DG + + L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359
Query: 1319 LRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1378
+R R+ ++ QDP S+L+P + + I E L Q ++E ++ + + E
Sbjct: 360 VRHRIQVVFQDP-------NSSLNP-RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEE 411
Query: 1379 NG----------ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
G +S GQRQ + + R L+ + +++LDE T+S+D
Sbjct: 412 VGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 5e-10
Identities = 57/227 (25%), Positives = 101/227 (44%), Gaps = 54/227 (23%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L ++ GE ++G +G GK+T ++ + + EP +G+I I G D++ DL
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVT-----DLPP 69
Query: 1322 R---LSIIPQD----PVMFEGTVRSNLD-PL------EESTDEQIWEALDKCQLGDEVRK 1367
+ ++++ Q+ P M TV N+ L ++ DE++ E + Q+
Sbjct: 70 KDRDIAMVFQNYALYPHM---TVYDNIAFGLKLRKVPKDEIDERVREVAELLQI------ 120
Query: 1368 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT-------ATDNL 1420
E LD K + S GQRQ V LGR +++ K+ ++DE +++D A
Sbjct: 121 -EHLLDRKPKQ----LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKR 175
Query: 1421 IQQTLRQHFSDCT-----VLTIAHRITSVIDSDLVLLLNHGLIEEFD 1462
+QQ L T +T+A RI ++N G I++
Sbjct: 176 LQQRLGTTTIYVTHDQVEAMTMADRI---------AVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 5e-10
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 45/222 (20%)
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK-----------LCGTKA- 684
+D++ ++ G + + G GSGKS+LL C+ G + GT ++A
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 685 --YVAQSPWIQSGKIEDNILFGKEMN-------RERYNAVLD---------ACSLKKDLE 726
+ ++ W G + N G M ER A+ A +++E
Sbjct: 80 RRRLMRTEW---GFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVE 136
Query: 727 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786
I D T I + SGG +QR+QIAR L + D+P +D + L ++L
Sbjct: 137 I----DPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLL 191
Query: 787 LGLLSSK--TVIYVTHQ---VEFLPAADLILVMKDGKITQAG 823
GL+ VI VTH L A +LVM+ G++ ++G
Sbjct: 192 RGLVRDLGLAVIIVTHDLGVARLL--AQRLLVMQQGRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 5e-10
Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 30/206 (14%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI---VEPA- 1300
K+ D+ V Y + L + P T +G +G GKST ++ L R+ ++
Sbjct: 19 KMRARDVSVFYGEKQ--ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR 76
Query: 1301 -AGQILIDGIDI--SLIGLHDLRSRLSIIPQDPVMFEGTVRSN---------LDPLEEST 1348
G+I +DG DI + + +LR+R+ ++ Q P F ++ N L +
Sbjct: 77 VTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAEL 136
Query: 1349 DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDE 1408
DE + +L K L +EV+ ++ E G S GQ+Q +C+ R + +++++DE
Sbjct: 137 DEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDE 189
Query: 1409 ATASVD---TA-TDNLIQQTLRQHFS 1430
+++D TA + LI + LRQ+++
Sbjct: 190 PCSALDPIATAKVEELIDE-LRQNYT 214
|
Length = 267 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 6e-10
Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 43/223 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L+ ++L+V G VA+ G G+GK++LL I+G V SG + G
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78
Query: 684 --AYVAQSPWI-QSGKIEDNILFG------KEMNRERYNAVLDACSLKKDLEILSFGDQT 734
AYV + I +E+N+L G KE V + K+
Sbjct: 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKER--------- 129
Query: 735 VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL---- 790
+R LSGG++Q + IARAL + L D+P + + E + +
Sbjct: 130 -RNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL-----APKIVEEIFEAIKELR 183
Query: 791 --SSKTVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDLIN 830
T++ V F L AD V+++G+I +G +L+
Sbjct: 184 KEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 7e-10
Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 45/219 (20%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L+ IS GE+ GI+G G+GKSTL++ + I +P +G++ + G LI L
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELG---- 97
Query: 1322 RLSIIPQDPVMFEGTVRSN-------LDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDS 1374
P E T R N L + DE++ E ++ +LGD +D
Sbjct: 98 -AGFDP------ELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGD-------FIDQ 143
Query: 1375 KVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA--------TDNLIQQTLR 1426
V + +S G + IL+LDE A D A + L+++
Sbjct: 144 PV----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNK- 198
Query: 1427 QHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNP 1464
T++ ++H + ++ D + L HG I +P
Sbjct: 199 ------TIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSP 231
|
Length = 249 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 8e-10
Identities = 42/203 (20%), Positives = 98/203 (48%), Gaps = 22/203 (10%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQI 1304
+L V Y L ++ + P + T +G +G GKST+++ R+ + G++
Sbjct: 15 NLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV 72
Query: 1305 LIDGIDI--SLIGLHDLRSRLSIIPQDPVMFEGTVRSNL------DPLEESTDEQIWEAL 1356
G ++ + ++R R+ ++ Q P F ++ N+ + + DE + +L
Sbjct: 73 TFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSL 132
Query: 1357 DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA 1416
+ L DEV+ K+ ++G + S GQ+Q +C+ R + + +++++DE +++D
Sbjct: 133 RQAALWDEVK-------DKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPI 185
Query: 1417 TDNLIQQTLRQHFSDCTVLTIAH 1439
+ I++ + + T++ + H
Sbjct: 186 STLRIEELMHELKEQYTIIIVTH 208
|
Length = 264 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (150), Expect = 8e-10
Identities = 71/265 (26%), Positives = 122/265 (46%), Gaps = 33/265 (12%)
Query: 584 QTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKV 643
Q K L++ F Q DL+++ + ++ +I + NF W ++ L D+NL +
Sbjct: 52 QKKAELKQ---FLNKKKTQVDLLKEDFNHAN--VFEIRNFNF-WYMNRTKHVLHDLNLDI 105
Query: 644 FHGMRVAVCGTVGSGKSSLLSCI------------LGEV---------PKISGTLKLCGT 682
A G G GKS+ L + GE+ KIS +L+L
Sbjct: 106 KRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS-SLELRTR 164
Query: 683 KAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTV--IGERG 740
V Q P I DN+ +G N +L+ ++K L+ + D+ + + G
Sbjct: 165 IGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKI-VEKSLKSAALWDEVKDDLDKAG 223
Query: 741 INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTH 800
LSGGQ+QR+ IARA+ + ++ L D+P SA+D + + +E++L L ++I VTH
Sbjct: 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKI-EELILELKKKYSIIIVTH 282
Query: 801 QV-EFLPAADLILVMKDGKITQAGK 824
+ + +D + G I +AG+
Sbjct: 283 SMAQAQRISDETVFFYQGWIEEAGE 307
|
Length = 329 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 9e-10
Identities = 63/225 (28%), Positives = 98/225 (43%), Gaps = 35/225 (15%)
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSS---LLSCILGEVPKISGTLKLCGTK---- 683
S P L DI+ + G A+ G GSGKS+ L++ +L + + + G
Sbjct: 18 SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK 77
Query: 684 ---------AYVAQSPWIQ--SGKIEDNILFGKEMNR-----ERYNAVLDACSLKKDLEI 727
V Q+P Q + D++ FG E NR E V D + D+ +
Sbjct: 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLE-NRAVPRPEMIKIVRDVLA---DVGM 133
Query: 728 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL 787
L + D NLSGGQKQR+ IA L + I + D+ S +D G +++
Sbjct: 134 LDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDP-AGKEQILKLIR 187
Query: 788 GLLSSK--TVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLIN 830
L TVI +TH ++ AD +LV+ DGK+ G ++ +
Sbjct: 188 KLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232
|
Length = 282 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 9e-10
Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 41/180 (22%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
VL+GI T GE ++G G+GKSTL++ + IV P +G + I G + +
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGG---------NPCA 76
Query: 1322 RLS----------IIPQDPVMFEG-TVRSNL------DPLEESTDEQIWEALDKCQLGDE 1364
RL+ ++PQ+P++F +V+ N+ +Q+ AL CQL +
Sbjct: 77 RLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALG-CQLDLD 135
Query: 1365 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA-TDNLIQQ 1423
G L+ + RQ+V + R L++ S+IL+LDE TAS+ A T+ L +
Sbjct: 136 S--SAGSLE-----------VADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR 182
|
Length = 510 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 686 VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTV--IGERGINL 743
V Q P + I +NI F E + VLD ++ L+ + DQ + + + L
Sbjct: 106 VFQRPNPFAKSIYENITFALERAGVKDKKVLDEI-VETSLKQAALWDQVKDDLHKSALTL 164
Query: 744 SGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTH 800
SGGQ+QR+ IARA+ DI L D+P SA+D + L +E + L + T+I VTH
Sbjct: 165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQL-EETMFELKKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 1e-09
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 41/173 (23%)
Query: 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD- 1318
++ +S GE GI G G+G++ L + LF + PA+G+I +DG ++ D
Sbjct: 13 KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA 72
Query: 1319 LRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEG-KLDSKVT 1377
+R+ ++ +P+D RK+EG LD V
Sbjct: 73 IRAGIAYVPED------------------------------------RKREGLVLDLSVA 96
Query: 1378 EN---GENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ 1427
EN S G +Q V L R L + ++L+LDE T VD I + +R+
Sbjct: 97 ENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRE 149
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 53/218 (24%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
VL + P G+ +VGR+G GKSTL++ L + P+AG++L L + R
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAP-----LAEARE 81
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTD-----------EQIWEALDKCQLGDEVRKKEG 1370
++ QD + L P ++ D + +AL L D R E
Sbjct: 82 DTRLMFQD---------ARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD--RANE- 129
Query: 1371 KLDSKVTENGENW----SMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT----DNLIQ 1422
W S GQ+Q V L R L+ R +L+LDE ++D T +LI+
Sbjct: 130 ------------WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIE 177
Query: 1423 QTLRQH-FSDCTVLTIAHRIT-SVIDSDLVLLLNHGLI 1458
+QH F TVL + H ++ +V +D VLL+ G I
Sbjct: 178 SLWQQHGF---TVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 1e-09
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 34/216 (15%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
LK+IN+ A+ G G GKS+LL + + ++ G + L Y
Sbjct: 20 LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
V Q P I DN+ FG M + LD ++K L + D+
Sbjct: 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEV-VEKSLRQAALWDEVK 138
Query: 736 --IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793
+ + G+ LSGGQ+QR+ IAR L + ++ L D+P SA+D + +E++ L +
Sbjct: 139 DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDP-VSTMRIEELMQELKQNY 197
Query: 794 TVIYVTHQVE----------FLPAADLILVMKDGKI 819
T+ VTH ++ FL DL+ + G+I
Sbjct: 198 TIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233
|
Length = 251 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 1e-09
Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 20/206 (9%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-AYVA--QSP 690
+ D++L ++ G A+ G G GKS+LL + G +G + L G ++V Q P
Sbjct: 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRP 92
Query: 691 ---WIQS------GKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGD-QTVIGERG 740
QS +E NI FG + ++ + + E+L Q +
Sbjct: 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVN-----EMLGLVHMQEFAKRKP 147
Query: 741 INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVT 799
LSGGQ+QR+ +AR+L + + L D+P A+D + EV+ L T + VT
Sbjct: 148 HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVT 207
Query: 800 H-QVEFLPAADLILVMKDGKITQAGK 824
H Q E + A I +M GK Q G+
Sbjct: 208 HDQEEAMTMAGRIAIMNRGKFVQIGE 233
|
Length = 377 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 43/215 (20%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 683
LK + L V G VA+ G GSGKS+LL+ + G SG ++L G
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83
Query: 684 -------AYVAQS-PWIQSGKIEDNI-----LFGKEMNRERYNAVLDACSLKKDLEILSF 730
+V QS I + +N+ L G+ R A K LE +
Sbjct: 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGA-------KALLEAVGL 136
Query: 731 GDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL 790
G + + LSGG++QR+ +ARA D+ D+P +D TG + + LL
Sbjct: 137 GKR--LTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATG-----DKIADLL 189
Query: 791 SSK------TVIYVTHQVEFLPAADLILVMKDGKI 819
+ T++ VTH + D L ++ G++
Sbjct: 190 FALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 26/190 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
++D ++ + G G GKS++L + L + + G + G Y
Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
V Q P S I DN+ FG +NR + + +K L+ + D+
Sbjct: 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDL---GDRVKHALQGAALWDEVK 140
Query: 736 --IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793
+ G++LSGGQ+QR+ IARA+ + ++ L D+P SA+D + +E+++ L
Sbjct: 141 DKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDP-IATRRVEELMVELKKDY 199
Query: 794 TVIYVTHQVE 803
T+ VTH ++
Sbjct: 200 TIALVTHNMQ 209
|
Length = 261 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 1e-09
Identities = 62/222 (27%), Positives = 108/222 (48%), Gaps = 31/222 (13%)
Query: 1276 TGIVGRTGSGKSTLIQTLFRIVE--PA---AGQILIDGIDI--SLIGLHDLRSRLSIIPQ 1328
T I+G +G GKST ++ + R+ + P+ G ++ DG DI LR ++ ++ Q
Sbjct: 68 TAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQ 127
Query: 1329 DPVMFEGTVRSNL--DPL------EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380
P F ++ N+ P ++ +E + ++L K L DEV + LD +N
Sbjct: 128 KPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDR---LD----KNA 180
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD---TAT-DNLIQQTLRQHFSDCTVLT 1436
S GQ+Q +C+ R L +IL+LDE T+++D TA ++LIQ+ LR + T++
Sbjct: 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE-LRGSY---TIMI 236
Query: 1437 IAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFSQ 1477
+ H + SD + G++ E A L N ++
Sbjct: 237 VTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPKDRMTE 278
|
Length = 286 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 1e-09
Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 13/184 (7%)
Query: 1236 PNDSWPSHGKIDLLDLQVRY-APQ--MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQT 1292
+ S I+L D+ + AP+ L I G+ IVG G GKSTL +
Sbjct: 331 HDKSV---DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKL 387
Query: 1293 LFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQI 1352
+ P G+IL+DG +S D R S I D +F+ + D E ++ +
Sbjct: 388 FCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGP--DEGEHASLDNA 445
Query: 1353 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATAS 1412
+ L + ++ D+V+ ++G S T S GQ++ + L L+ IL+ DE A
Sbjct: 446 QQYLQRLEIADKVKIEDGGF-STTTA----LSTGQQKRLALICAWLEDRPILLFDEWAAD 500
Query: 1413 VDTA 1416
D A
Sbjct: 501 QDPA 504
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 47/231 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------T 682
L ++L + G +A+ G G+GKS+LL + GE+ SG + L G
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76
Query: 683 KAYVAQSPWIQ-SGKIEDNILFGKEMNR-----ERYNAVLDACSLKKDLEILSFGDQTVI 736
+A + Q+ + +++ + G+ +R E + DL L+
Sbjct: 77 RAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA------- 129
Query: 737 GERGIN-LSGGQKQRIQIARALYQ------DSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789
R LSGG++QR+Q+AR L Q D+P SA+D H Q L L
Sbjct: 130 -GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIA---H--QHHTLRL 183
Query: 790 LSSKT-----VIYVTHQVEFLPA--ADLILVMKDGKITQAGKYNDLINSGT 833
V+ V H + L A AD I+++ G++ +G D++ T
Sbjct: 184 ARQLAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDVLTDET 233
|
Length = 259 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-09
Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 34/201 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-----EVPKISGTLKLCGTKAY----- 685
LK +++ + A+ G G GKS+ L C+ + +I G+++L G Y
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMNRERYNAVL------DACSLKKDLEILS 729
V QSP I +NI +G + + +L D + +L S
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERS 180
Query: 730 FGDQTV-------IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLF 782
+ + + + LSGGQ+QR+ IAR L D ++ L D+P SA+D S +
Sbjct: 181 LRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKI- 239
Query: 783 QEVLLGLLSSKTVIYVTHQVE 803
++++ L TV+ VTH ++
Sbjct: 240 EDLIEELAEEYTVVVVTHNMQ 260
|
Length = 305 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 44/193 (22%), Positives = 78/193 (40%), Gaps = 27/193 (13%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI-DG 1308
++ Y L L+ +S G++ IVG G+GKSTL++ L + P +G + + +
Sbjct: 326 NVSKGYDGGRLL-LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET 384
Query: 1309 IDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQL--GDEVR 1366
+ I H + L DEQ A G++
Sbjct: 385 VKIGYFDQHRDELDPDKTVLE----------ELSEGFPDGDEQEVRAYLGRFGFTGEDQE 434
Query: 1367 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR 1426
K G L S G++ + L ++LL+ +L+LDE T +D + +++ L
Sbjct: 435 KPVGVL-----------SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL 483
Query: 1427 QHFSDCTVLTIAH 1439
+ TVL ++H
Sbjct: 484 DF--EGTVLLVSH 494
|
Length = 530 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 59/186 (31%), Positives = 95/186 (51%), Gaps = 16/186 (8%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
IDL + Y + V+ G+S T GE G++G G+GKST+ + + + P AG+I
Sbjct: 42 IDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT 99
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQ-DPVMFEGTVRSNL----DPLEESTDEQIWEALDKCQ 1360
+ G+ + R+R+ ++PQ D + E TVR NL ST E EA+
Sbjct: 100 VLGVPVPARA-RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREI--EAVIPSL 156
Query: 1361 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNL 1420
L E + E K D++V++ S G ++ + L R L+ ++L+LDE T +D +L
Sbjct: 157 L--EFARLESKADARVSD----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 210
Query: 1421 IQQTLR 1426
I + LR
Sbjct: 211 IWERLR 216
|
Length = 340 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-09
Identities = 55/238 (23%), Positives = 103/238 (43%), Gaps = 34/238 (14%)
Query: 1249 LDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308
L+L R ++ + T P T + G +GSGK++LI + + P G+I ++G
Sbjct: 2 LELNFRQ--RLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNG 59
Query: 1309 IDISLIGLHDLRSRLSIIP---------QDPVMFEG-TVRSNLD-PLEESTDEQIWEALD 1357
L D + + P QD +F TVR NL + +S Q + +
Sbjct: 60 RV-----LVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVA 114
Query: 1358 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT 1417
+ + + G L S G++Q V +GR LL ++L++DE AS+D
Sbjct: 115 LLGIEHLLDRYPGTL-----------SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163
Query: 1418 -DNLIQ--QTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471
++ + LR + +L ++H + V+ +D V++L +G ++ + +
Sbjct: 164 KREILPYLERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220
|
Length = 352 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L I+ P + ++G G+GKSTL + I++P +G +LI G I+ + ++R
Sbjct: 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK 78
Query: 1322 RLSIIPQDP--VMFEGTVRS-------NLDPLEESTDEQIWEALDKCQLGDEVRKKEGKL 1372
+ ++ Q+P +F TV NL EE+ ++ AL LG E +L
Sbjct: 79 FVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALH--MLGLE------EL 130
Query: 1373 DSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
+V + S G+++ V + V+ ++L+LDE TA +D
Sbjct: 131 RDRVP---HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLD 169
|
Length = 277 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-09
Identities = 60/224 (26%), Positives = 112/224 (50%), Gaps = 27/224 (12%)
Query: 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI----DGIDISLIGLHDLR 1320
+S GE GIVG +G+GK+TL + + ++EP +G++ + + +D++ G D R
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP-DGR 360
Query: 1321 SR----LSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQ-------LGDEVRKKE 1369
R + I+ Q+ ++ R+ LD L E+ ++ + L + + +G + K E
Sbjct: 361 GRAKRYIGILHQEYDLY--PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAE 418
Query: 1370 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTL---R 1426
LD E S G+R V L +VL+K +I++LDE T ++D T + ++ R
Sbjct: 419 EILDKYPDE----LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAR 474
Query: 1427 QHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469
+ T + ++H + V+D D L+ G I + +P ++E
Sbjct: 475 EEMEQ-TFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-09
Identities = 46/220 (20%), Positives = 95/220 (43%), Gaps = 29/220 (13%)
Query: 629 ISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----- 683
S ++DI+ V G + G VGSG++ L++C+ G + G ++L G
Sbjct: 272 TSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS 331
Query: 684 ---------AYVAQSP----WIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDL----- 725
AY+ +S + + I N+ + + Y + +
Sbjct: 332 PLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAEN 391
Query: 726 --EILSFGDQTVIGERGIN-LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLF 782
E+L+ +V + I LSGG +Q++ I++ L ++ +FD+P +D + ++
Sbjct: 392 QRELLALKCHSV--NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIY 449
Query: 783 QEVLLGLLSSKTVIYVTHQV-EFLPAADLILVMKDGKITQ 821
+ + K ++ V+ ++ E + D I V +G++TQ
Sbjct: 450 KVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 27/189 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
L D++L + A G G GKS+ L C+ + +++G + L G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMN-RERYNAVLDAC---SLKKDLEILSFG 731
V Q P I +N+ +G ++ R A LD SL+K
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 732 DQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS 791
D+ + E G LSGGQ+QR+ IARA+ ++ L D+P SA+D + + +E++ L
Sbjct: 155 DR--LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV-EELIDELRQ 211
Query: 792 SKTVIYVTH 800
+ T++ VTH
Sbjct: 212 NYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-09
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 30/169 (17%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI---SLIGLHDL 1319
L G+S T G+ +VG +G GKSTL + L I P G++ G D+ L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 1320 RSRLSIIPQDPVMFEG------TVRSNL-DPLEESTDEQIWEALDKCQLGDEVRKKEGKL 1372
R ++ I+ Q+P G V L +PL +T L E R+K +
Sbjct: 91 RQKIQIVFQNPY---GSLNPRKKVGQILEEPLLINTS------LSA----AERREKALAM 137
Query: 1373 DSKVTENGENW-------SMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
+KV E++ S GQRQ + + R L+ +++ DE +++D
Sbjct: 138 MAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 2e-09
Identities = 65/233 (27%), Positives = 105/233 (45%), Gaps = 28/233 (12%)
Query: 1255 YAPQMPLV---LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI 1311
Y P P L I G T ++G TGSGKSTL+Q L +++P G++ + I +
Sbjct: 11 YQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV 70
Query: 1312 SLIG----LHDLRSRLSIIPQDP--VMFEGTV-------RSNLDPLEESTDEQIWEALDK 1358
S + +R ++ ++ Q P +FE TV N +E ++ E L+
Sbjct: 71 SSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEM 130
Query: 1359 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD-TAT 1417
L DE +K + S GQ + V + +L ++L+LDE TA +D A
Sbjct: 131 VGLADEFWEK----------SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR 180
Query: 1418 DNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469
++Q H S TV+ + H + V D +D V LL G I P+++ +
Sbjct: 181 IEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233
|
Length = 288 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 21/206 (10%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L +S G G +G G+GKST ++ + + P +G + + G D+ L +++
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV-LQNPKEVQR 75
Query: 1322 RLSIIPQ-DPVMFEGTVRSNLDPL-------EESTDEQIWEALDKCQLGDEVRKKEGKLD 1373
+ +P+ +P+ + VR L + + +++ E ++ L E KK G+L
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQL- 134
Query: 1374 SKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCT 1433
S G RQ V L + L+ K+L+LDE T +D I+ ++ D T
Sbjct: 135 ----------SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKT 184
Query: 1434 VLTIAHRITSV-IDSDLVLLLNHGLI 1458
++ H + V D V+++N G I
Sbjct: 185 IILSTHIMQEVEAICDRVIIINKGKI 210
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 3e-09
Identities = 55/224 (24%), Positives = 91/224 (40%), Gaps = 43/224 (19%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 683
L ++L V G VA+ G G+GK++LL I+G +P SG+++ G
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERA 73
Query: 684 ----AYVAQSPWIQSG-KIEDNILFG-----KEMNRERYNAVLDACSLKKDLEILSFGDQ 733
YV + I +E+N+L G + + R V + K+
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERR------- 126
Query: 734 TVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPF-----SAVDAHTGSHLFQEVLLG 788
+ LSGG++Q + IARAL + L D+P V+ +F E +
Sbjct: 127 ---KQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE-----EIF-EAIRE 177
Query: 789 LLSSK-TVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDLIN 830
L T++ V F L AD V++ G++ G +L+
Sbjct: 178 LRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 40/225 (17%)
Query: 626 SWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-- 683
SW + +++ G + G GSGKS+LL + G + +GT+ L G
Sbjct: 8 SWSAGGR-LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH 66
Query: 684 -----------AYVAQ-SPWIQSGKIEDNILFGKEMNRERY-------NAVLDACSLKKD 724
A V Q S + D + G+ +R + AV+D
Sbjct: 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRAL--AR 124
Query: 725 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQE 784
E+ D+ + LSGG++QR+ +ARAL Q+ + L D+P + +D Q
Sbjct: 125 TELSHLADRDMS-----TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA-----QL 174
Query: 785 VLLGLLSSK-----TVIYVTHQVEF-LPAADLILVMKDGKITQAG 823
L L+ TV+ H + D ++V+ G++ AG
Sbjct: 175 ETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 3e-09
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV--LLGLLSSKTVIYVTH 800
LSGGQ+QR+ + RA+ ++ ++LFD+P S +DA + E+ L L + T +YVTH
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKT-TSLYVTH 193
Query: 801 -QVEFLPAADLILVMKDGKITQAG 823
QVE + AD ++VM G Q G
Sbjct: 194 DQVEAMTLADRVVVMNGGVAEQIG 217
|
Length = 356 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 4e-09
Identities = 62/239 (25%), Positives = 94/239 (39%), Gaps = 76/239 (31%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------- 681
L D++L + G VA+ G G+GKS+LL + GE+ SG ++L G
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAE 73
Query: 682 ---TKAYVAQS------------------PWIQSGKIEDNILFGKEMNRERYNAVLDACS 720
+A + Q P + ED+ L + A +D
Sbjct: 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPH-GLSRAEDDALVAAAL------AQVDLAH 126
Query: 721 LK-KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDI-----YLF-DDPFSAV 773
L +D LS GG++QR+Q+AR L Q + +L D+P SA+
Sbjct: 127 LAGRDYPQLS---------------GGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSAL 171
Query: 774 D-AHTGSHLFQEVLLGLLSSKT------VIYVTHQVEFLPA--ADLILVMKDGKITQAG 823
D AH Q +L L VI V H + L A AD I+++ G++ G
Sbjct: 172 DLAH------QHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADG 223
|
Length = 258 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 23/203 (11%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI--- 692
L DI+ V G + G G+GK++ + ILG + SG + G +A I
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75
Query: 693 -------QSGKIEDNILFG---KEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGIN 742
K+ D +++ K + +E A + LE+ + ++ V E
Sbjct: 76 PEERGLYPKMKVIDQLVYLAQLKGLKKE--EARRRIDEWLERLELSEYANKRV--EE--- 128
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS-KTVIYVTHQ 801
LS G +Q++Q A+ D ++ + D+PFS +D L ++V+ L + KTVI THQ
Sbjct: 129 LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVILSTHQ 187
Query: 802 VEFLPA-ADLILVMKDGKITQAG 823
+E + D +L++ G+ G
Sbjct: 188 MELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 4e-09
Identities = 45/192 (23%), Positives = 92/192 (47%), Gaps = 22/192 (11%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA-----AGQILIDGIDI--SLIG 1315
L+ I+ + P E T I+G +G GKST I+TL +++ G++ +G +I +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 1316 LHDLRSRLSIIPQDPVMFEGTVRSNL--------DPLEESTDEQIWEALDKCQLGDEVRK 1367
L +LR + ++ Q F ++ N+ ++ E + ++L L DEV+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK- 146
Query: 1368 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ 1427
++ + S GQ+Q +C+ R L +L++DE T+++D + I++ + +
Sbjct: 147 ------DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK 200
Query: 1428 HFSDCTVLTIAH 1439
T++ + H
Sbjct: 201 LKEKYTIVIVTH 212
|
Length = 259 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 4e-09
Identities = 50/193 (25%), Positives = 93/193 (48%), Gaps = 31/193 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
LK++++++ A+ G G GKS+ + C+ L + +I G + + G Y
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEM---NRERYNAVLDACSLKKDLEILSFGD 732
V Q P I DN+ +G + N++ + V+ + L + D
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVV-----ENALRSAALWD 142
Query: 733 QTV--IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL 790
+T + ++LSGGQ+QR+ IAR L I LFD+P SA+D + + + +++++ L
Sbjct: 143 ETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARI-EDLIMNLK 201
Query: 791 SSKTVIYVTHQVE 803
T++ VTH ++
Sbjct: 202 KDYTIVIVTHNMQ 214
|
Length = 258 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 4e-09
Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAG-----QILIDGIDISLIGLHDL--RSRLSI 1325
E TG +G +G GKST++++L R+ + G + G D+ G+ + R + +
Sbjct: 34 NEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGM 93
Query: 1326 IPQDPVMFEGTVRSN------LDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1379
+ Q P F ++ N L+ + +++ AL L DEV+ K+ +
Sbjct: 94 VFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-------DKLKVS 146
Query: 1380 GENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439
G + S GQ+Q +C+ R + ++L+LDE +++D +++ + + D T+ + H
Sbjct: 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTH 206
Query: 1440 RITSVI 1445
+ I
Sbjct: 207 NMQQAI 212
|
Length = 261 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 4e-09
Identities = 64/239 (26%), Positives = 96/239 (40%), Gaps = 45/239 (18%)
Query: 619 DIVDGNFSWDISSHNP----TLKDINLKVFHGMRVAVCGTVGSGKSSLLS---------- 664
DI+ N S+ + P L + +L V GT GSGKS+++
Sbjct: 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET 65
Query: 665 --CILGE------VPKISGTLKLCGTKAYVAQSPWIQ--SGKIEDNILFGK----EMNRE 710
I+G+ + KI +L V Q P Q IE +I FG E +E
Sbjct: 66 GQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQE 125
Query: 711 RYNAV---LDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFD 767
Y V L L +D + LSGGQK+R+ +A + D + + D
Sbjct: 126 AYKKVPELLKLVQLPEDY----------VKRSPFELSGGQKRRVALAGIIAMDGNTLVLD 175
Query: 768 DPFSAVDAHTGSHLFQEVLLGLLSS--KTVIYVTHQV-EFLPAADLILVMKDGKITQAG 823
+P +D G F + L K +I VTH + + L AD ++VM +GK+ G
Sbjct: 176 EPTGGLDP-KGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233
|
Length = 289 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 4e-09
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
V + ++ P G T I+G G GKSTL++TL R++ PA G + +DG I ++
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 1322 RLSII------PQDPVMFEGTVRSNL--DPLEESTDEQIWEALDKCQLGDEVRKKEGKLD 1373
R+ ++ P D + E R PL W D+ + ++ +
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTR-----WRKEDEEAVTKAMQAT--GIT 134
Query: 1374 SKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
++ + S GQRQ + VL + + I++LDE T +D
Sbjct: 135 HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 40/230 (17%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTL-------------KLC 680
TLKD++ + G ++ G GSGKS++ ++G E K SG + KL
Sbjct: 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK-SGEIFYNNQAITDDNFEKLR 82
Query: 681 GTKAYVAQSPWIQ-SGKI---------EDNILFGKEMNRERYNAVLDACSLKKDLEILSF 730
V Q+P Q G I E++ + EM+R R + L K +++L
Sbjct: 83 KHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR-RVSEAL------KQVDMLER 135
Query: 731 GDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL 790
D LSGGQKQR+ IA L + + + D+ S +D +L +++ +
Sbjct: 136 AD-----YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLL-DLVRKVK 189
Query: 791 SSK--TVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMEL 838
S T+I +TH + AD ++VM G + + G ++ + + +
Sbjct: 190 SEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEELTRI 239
|
Length = 269 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 63/232 (27%), Positives = 101/232 (43%), Gaps = 43/232 (18%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI---------- 1311
VL GI GE I+G +GSGK+TL++ + + +P AG I + I I
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 1312 SLIGLHDLRSRLSIIPQDPVMF----------EGTVRSNLDPLEESTDEQIWEALDKCQL 1361
LI LR + + Q+ +F EG V +P EE+T
Sbjct: 78 GLI--RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEAT-----------AR 124
Query: 1362 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI 1421
E+ K G L K T S GQ+Q V + R L R ++++ DE T+++D +
Sbjct: 125 ARELLAKVG-LAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEV 183
Query: 1422 QQTLRQHFSDC-TVLTIAHRITSVID-SDLVLLLNHGLIEE-------FDNP 1464
T+RQ + T++ + H ++ D +D + ++ G I E F +P
Sbjct: 184 LNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADP 235
|
Length = 250 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 13/89 (14%)
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL--LGLLSS--KTVIYV 798
LSGGQ+QR+ IARAL + ++ LFD+P SA+D L EVL + L+ +T++ V
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALD----PELVGEVLKVMQDLAEEGRTMVVV 208
Query: 799 THQVEFLPAADL---ILVMKDGKITQAGK 824
TH++ F A D+ ++ + GKI + G
Sbjct: 209 THEMGF--ARDVSSHVIFLHQGKIEEEGP 235
|
Length = 256 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 6e-09
Identities = 63/242 (26%), Positives = 111/242 (45%), Gaps = 40/242 (16%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI--SLIGLHDL 1319
VL I GE I+G +GSGKSTL++ + ++ E +G +++DG+ + + +
Sbjct: 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLI 75
Query: 1320 R-------SRLSIIPQ----DPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKK 1368
R + + P + VMF G +R EE+ ++Q E L K L +
Sbjct: 76 RQEAGMVFQQFYLFPHLTALENVMF-GPLRVRGASKEEA-EKQARELLAKVGLAERAHHY 133
Query: 1369 EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR-- 1426
+L S GQ+Q V + R L + K+++ DE T+++D L + L+
Sbjct: 134 PSEL-----------SGGQQQRVAIARALAVKPKLMLFDEPTSALDP---ELRHEVLKVM 179
Query: 1427 QHFSD--CTVLTIAHRITSV--IDSDLVLLLNHGLIEEFDNPANLLENKSS----SFSQL 1478
Q ++ T++ + H I + S L + ++ G I E +P L++N S F Q
Sbjct: 180 QDLAEEGMTMVIVTHEIGFAEKVASRL-IFIDKGRIAEDGDPQVLIKNPPSQRLQEFLQH 238
Query: 1479 VA 1480
V+
Sbjct: 239 VS 240
|
Length = 240 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 6e-09
Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 23/193 (11%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 683
L +I+ + G + G G GKS+LL + + SGTL G
Sbjct: 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79
Query: 684 ----AYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGER 739
+Y AQ+P + + DN++F ++ ++ D DLE F I +
Sbjct: 80 RQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQ----PDPAIFLDDLE--RFALPDTILTK 133
Query: 740 GIN-LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK--TVI 796
I LSGG+KQRI + R L + L D+ SA+D H E++ + + V+
Sbjct: 134 NIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESN-KHNVNEIIHRYVREQNIAVL 192
Query: 797 YVTHQVEFLPAAD 809
+VTH + + AD
Sbjct: 193 WVTHDKDEINHAD 205
|
Length = 225 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 6e-09
Identities = 57/243 (23%), Positives = 108/243 (44%), Gaps = 27/243 (11%)
Query: 1237 NDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI 1296
D P+ K ++ L Y L+ I+ + T ++G +G GKST ++ R+
Sbjct: 8 GDVSPTQQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRM 65
Query: 1297 --VEPA---AGQILIDGIDISLIGLH----DLRSRLSIIPQDPVMFEGTVRSNLD----- 1342
+ P G+I++ +++++ ++R R+S++ Q P F ++ N+
Sbjct: 66 HDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRI 125
Query: 1343 ---PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399
+E++ AL L DEV+ + G L N S GQ+Q +C+ R L
Sbjct: 126 RGVKRRSILEERVENALRNAALWDEVKDRLGDL-------AFNLSGGQQQRLCIARALAT 178
Query: 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLI 1458
+IL+ DE T+++D I++ + + T+L + H + SD + G +
Sbjct: 179 DPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGEL 238
Query: 1459 EEF 1461
EF
Sbjct: 239 IEF 241
|
Length = 265 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 6e-09
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 33/213 (15%)
Query: 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQD--- 1329
GE G++G G+GK+TL++ + ++ PA G + + G + +PQ
Sbjct: 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEF 60
Query: 1330 ----PVMFEGTVRSN----LDPLEESTDEQ---IWEALDKCQLGDEVRKKEGKLDSKVTE 1378
P+ TV S + L + +AL + L + + G+L
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGEL------ 114
Query: 1379 NGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSD-CTVLTI 1437
S GQRQ V + R L R +L+LDE +D T L+ + + +L
Sbjct: 115 -----SGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169
Query: 1438 AHRITSVIDS-DLVLLLNHGLIEEFDNPANLLE 1469
H + + + D V+LLN +I + P L +
Sbjct: 170 THDLAQAMATCDRVVLLNGRVIAD-GTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 7e-09
Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 33/217 (15%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTKAYVAQSPWIQS 694
L +++L V G V G G+GKS+L+ C+ L E P SG++ + G + +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-SGSVIVDGQDLTTLSNSELTK 79
Query: 695 GKIEDNILFGKEMNRERYNAVLDACSLKKDL-------------EILSFGDQTVIGERG- 740
+ + ++F + N V +L +L E+L+ +G++
Sbjct: 80 ARRQIGMIF-QHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLAL---VGLGDKHD 135
Query: 741 ---INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVD-AHTGS--HLFQEV--LLGLLSS 792
NLSGGQKQR+ IARAL + + L D+ SA+D A T S L +E+ LGL
Sbjct: 136 SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL--- 192
Query: 793 KTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDL 828
T++ +TH+++ + D + V+ +G++ + G +++
Sbjct: 193 -TILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 7e-09
Identities = 71/239 (29%), Positives = 107/239 (44%), Gaps = 25/239 (10%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTL--FRIVEPAAGQILID 1307
DL V + +L+G++ T GE I+G GSGKSTL T+ E G+IL D
Sbjct: 8 DLHVEVEGKKE-ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFD 66
Query: 1308 GIDISLIGLHDLRSRLSIIP--QDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEV 1365
G DI + + R+R I Q PV G +N D L + + + + E+
Sbjct: 67 GEDILELSPDE-RARAGIFLAFQYPVEIPGV--TNSDFLRAAMNARRGARGILPEFIKEL 123
Query: 1366 RKKEGKL--DSKVTENG--ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI 1421
++K L D + E E +S G+++ + ++LL K+ +LDE + +D D L
Sbjct: 124 KEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD--IDALK 181
Query: 1422 Q-----QTLRQHFSDCTVLTIAH--RITSVIDSDLVLLLNHGLIEEFDNP--ANLLENK 1471
LR+ VL I H R+ I D V +L G I + +P A LE K
Sbjct: 182 IVAEGINALRE--EGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEELEEK 238
|
Length = 251 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 1e-08
Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 29/218 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
L +NL++ A+ G GSGKS+LL L ++SG + L G +
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 686 --------VAQSP-WIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTV- 735
V Q P I + I +N+ G ++NR + ++ LE D+
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD 138
Query: 736 -IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKT 794
+ LSGGQ+QR+ IARAL ++ L D+P + +D + + + + L L T
Sbjct: 139 RLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI-ESLFLELKKDMT 197
Query: 795 VIYVTHQVEFLPAA----DLILVMKDGKITQAGKYNDL 828
++ VTH F A D + + G+I + G ++
Sbjct: 198 IVLVTH---FPQQAARISDYVAFLYKGQIVEWGPTREV 232
|
Length = 250 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 43/195 (22%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---TKAYVAQSP 690
L+D++ + G V + G G+GKS+LL I GE G + + G ++ + P
Sbjct: 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75
Query: 691 W--------------IQSGKIEDNILF-----GKEMN--RERYNAVLDACSLKKDLEILS 729
+ + + +N+ GK R R + VLD LK + +
Sbjct: 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH--KARA 133
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGS---HLFQEV- 785
Q LSGG++QR+ IARA+ + L D+P +D LF+E+
Sbjct: 134 LPSQ---------LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184
Query: 786 LLGLLSSKTVIYVTH 800
LG TV+ TH
Sbjct: 185 RLGT----TVLMATH 195
|
Length = 223 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-08
Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 39/253 (15%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV-EPAA-- 1301
I L + ++GIS GE +VG +GSGKS ++ ++ PAA
Sbjct: 8 SIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAH 67
Query: 1302 --GQILIDGIDI---SLIGLHDLR-SRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEA 1355
G IL DG D+ S L +R +++ +I Q+P+ ++L+PL + +Q+ E
Sbjct: 68 PSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPM-------TSLNPL-HTIGKQLAEV 119
Query: 1356 L-------------DKCQLGDEV--RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1400
L +L + V + E +LD+ E S GQRQ V + L
Sbjct: 120 LRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHE----LSGGQRQRVMIAMALANE 175
Query: 1401 SKILMLDEATASVDTATDNLIQQTLR--QHFSDCTVLTIAHRITSVID-SDLVLLLNHGL 1457
+L+ DE T ++D I L+ Q +L I H + V +D V ++ HG
Sbjct: 176 PDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235
Query: 1458 IEEFDNPANLLEN 1470
I E L
Sbjct: 236 IVETGTTETLFAA 248
|
Length = 534 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 31/198 (15%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322
L+ S T PGG +VG GSGKSTL + L V A+G+I I G L+
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QALQKN 78
Query: 1323 L-SIIPQD-------PVMFEGTVRSN-------LDPLEESTDEQIWEALDKCQLGDEVRK 1367
L + +PQ PV+ E V L ++ + + AL + + + +
Sbjct: 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR 138
Query: 1368 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ 1427
+ G+L S GQ++ V L R + ++ ++++LDE VD T+ I LR+
Sbjct: 139 QIGEL-----------SGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRE 187
Query: 1428 HFSD-CTVLTIAHRITSV 1444
+ T+L H + SV
Sbjct: 188 LRDEGKTMLVSTHNLGSV 205
|
Length = 272 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 38/217 (17%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI-------- 1296
+++ +L + Y + L IS P T +G +G GKSTL++ R+
Sbjct: 25 ALEVRNLNLFYGDKQ--ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 1297 VEPAAGQILIDGIDISLIGLH--DLRSRLSIIPQDPVMFEGTVRSN------LDPLEE-- 1346
+E G+I +DG +I + +LR R+ ++ Q P F ++ N L +
Sbjct: 83 IE---GEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRR 139
Query: 1347 STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILML 1406
DE + +L L DEV+ ++ EN S GQ+Q + + R + ++L+L
Sbjct: 140 VLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLL 192
Query: 1407 DEATASVD---TAT-DNLIQQTLRQHFSDCTVLTIAH 1439
DE T+++D T + LI + L+ + T++ + H
Sbjct: 193 DEPTSALDPISTLKIEELITE-LKSKY---TIVIVTH 225
|
Length = 272 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 24/185 (12%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA---AGQILIDGIDISLIGLHD 1318
+L ++ T GE ++G +G GKSTL+ + + G++ ++ + ++
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA- 75
Query: 1319 LRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRK------KEGKL 1372
+ ++ I+ QD ++F S + + AL G+ R + L
Sbjct: 76 -QRQIGILFQDALLFP----------HLSVGQNLLFALPATLKGNARRNAANAALERSGL 124
Query: 1373 DSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDC 1432
D ++ S GQR V L R LL + K L+LDE + +D A L Q + FS+
Sbjct: 125 DGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA---LRDQFRQWVFSEV 181
Query: 1433 TVLTI 1437
I
Sbjct: 182 RAAGI 186
|
Length = 213 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 1e-08
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 741 INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL--LGLLSSKT---V 795
+LSGG+KQR+ I RAL ++ L D+P +++D +E+L L L+ + +
Sbjct: 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK----RELLPYLERLAREINIPI 182
Query: 796 IYVTHQV-EFLPAADLILVMKDGKITQAGKYNDLINS 831
+YV+H + E L AD ++V++ GK+ G ++ S
Sbjct: 183 LYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219
|
Length = 352 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 49/243 (20%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L+ IS + GE ++G +G GK+TL++ + + AG I G DI +
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI---------T 69
Query: 1322 RLS-------IIPQDPVMFEG-TVRSN----LDPLEESTDE---QIWEALDKCQLGDEVR 1366
RL I+ Q +F TV N L E ++ E LD L R
Sbjct: 70 RLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER 129
Query: 1367 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR 1426
K G+L S GQ+Q V L R L +L+LDE +A D +++ LR
Sbjct: 130 KYPGQL-----------SGGQQQRVALARALATSPGLLLLDEPL----SALDARVREHLR 174
Query: 1427 QHFSD------CTVLTIAH-RITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLV 1479
T + + H + ++ +D ++++NHG+IE+ P + + ++ F V
Sbjct: 175 TEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF---V 231
Query: 1480 AEY 1482
A++
Sbjct: 232 ADF 234
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 2e-08
Identities = 48/214 (22%), Positives = 102/214 (47%), Gaps = 22/214 (10%)
Query: 1241 PSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-- 1298
P H ++ ++V Y + LV + P + +G +G GKSTL++ R+ +
Sbjct: 16 PDHSVFEVEGVKVFYGGFLALV--DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLI 73
Query: 1299 PAA---GQILIDGIDI--SLIGLHDLRSRLSIIPQDPVMFEGTVRSNL------DPLEES 1347
P A G++L +I S I LR ++ ++ Q P F ++ N+ + + +
Sbjct: 74 PGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGN 133
Query: 1348 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLD 1407
DE + ++L + + +EV+ K+ E G S GQ+Q +C+ R + + +L++D
Sbjct: 134 LDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMD 186
Query: 1408 EATASVDTATDNLIQQTLRQHFSDCTVLTIAHRI 1441
E +++D + +++ + T++ + H +
Sbjct: 187 EPCSALDPISTRQVEELCLELKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 56/228 (24%), Positives = 91/228 (39%), Gaps = 49/228 (21%)
Query: 608 KQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI- 666
S + + + S+ +K++ + G A+ G G GKS++L +
Sbjct: 4 TNKKISKNIIISLQNVTISYGTFE---AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLN 60
Query: 667 ----LGEVPKISGTLKLCGTKAY---------------VAQSPWIQSGKIEDNILFGKEM 707
L E + G + GT Y V Q P I +NI FG +
Sbjct: 61 RMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARI 120
Query: 708 N------------RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 755
N R AV D C K + E G +LSGGQ+QR+ IAR
Sbjct: 121 NGYTGDMDELVERSLRKAAVWDECKDK-------------LNESGYSLSGGQQQRLCIAR 167
Query: 756 ALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVE 803
+ + ++ L D+P SA+D + + +E + L + T++ VTH ++
Sbjct: 168 TIAIEPEVILMDEPCSALDPISTLKI-EETMHELKKNFTIVIVTHNMQ 214
|
Length = 269 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 2e-08
Identities = 53/222 (23%), Positives = 101/222 (45%), Gaps = 23/222 (10%)
Query: 1255 YAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI---VEPAA--GQILIDGI 1309
Y + VL ++ + T +G +G GKST ++ L ++ +E + G+I G
Sbjct: 90 YMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGT 149
Query: 1310 DI--SLIGLHDLRSRLSIIPQDPVMFEGTVRSNL--DPLEES-TDEQIWE-----ALDKC 1359
+ I +LR+R+ ++ Q P FE ++ N+ P D +I E +L
Sbjct: 150 NTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSA 209
Query: 1360 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN 1419
L DEV+ + + G S GQ+Q +C+ R + ++L++DE T+++D
Sbjct: 210 ALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
Query: 1420 LIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEE 1460
I++ + + +++ + H + SD + G IEE
Sbjct: 263 KIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE 304
|
Length = 329 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 48/201 (23%), Positives = 77/201 (38%), Gaps = 33/201 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP---KISGTLKLCGTK--------- 683
L ++N + G V + G G GKS+LLS ++G + +G L L +
Sbjct: 18 LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77
Query: 684 --AYVAQSPWI-QSGKIEDNILFG------KEMNRERYNAVLDACSLKKDLEILSFGDQT 734
+ Q + + N+LF R NA L+ L
Sbjct: 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFH--QDPAT- 134
Query: 735 VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKT 794
LSGGQ+ R+ + RAL L D+PFS +D Q V + ++
Sbjct: 135 --------LSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGI 186
Query: 795 -VIYVTHQVEFLPAADLILVM 814
+ VTH ++ +PA ++ M
Sbjct: 187 PTVQVTHDLQDVPAGSRVIEM 207
|
Length = 213 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 71/252 (28%), Positives = 117/252 (46%), Gaps = 40/252 (15%)
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----TKAYVAQS---- 689
D++ + G + G G+GKS++ +LG + G + + G ++A +A+
Sbjct: 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81
Query: 690 -PWIQSGKIE----DNIL-FGK--EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGI 741
P + E +N+L FG+ M+ AV+ SL + + S D V
Sbjct: 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP--SLLEFARLESKADVRVA----- 134
Query: 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTH 800
LSGG K+R+ +ARAL D + + D+P + +D H HL E L LL+ KT++ TH
Sbjct: 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILLTTH 193
Query: 801 QVEFLPAA----DLILVMKDGKITQAGKYNDLINS--GTDFMELVGAHEQALLALGSIEG 854
F+ A D + V++ G+ G+ + LI+ G + +E+ G L L
Sbjct: 194 ---FMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEIYGGDPDELREL----I 246
Query: 855 RPASER--ASGE 864
RP + R SGE
Sbjct: 247 RPYARRIEVSGE 258
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 21/150 (14%)
Query: 697 IEDNILFG-------KEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 749
IE +I+FG KE ++R K +E++ D++ + LSGGQK+
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKR---------AAKYIELVGL-DESYLQRSPFELSGGQKR 172
Query: 750 RIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVE-FLPA 807
R+ +A L + D +FD+P + +D G E+ L KT+I VTH ++ L
Sbjct: 173 RVALAGILAMEPDFLVFDEPTAGLDPQ-GVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231
Query: 808 ADLILVMKDGKITQAGKYNDLINSGTDFME 837
+ KDGKI + G D+++ F+
Sbjct: 232 TKRTIFFKDGKIIKDGDTYDILSD-NKFLI 260
|
Length = 305 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 63/248 (25%), Positives = 102/248 (41%), Gaps = 47/248 (18%)
Query: 611 SGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV 670
S +D+ +F+ + +I+L V G A+ G G GK++LL I G++
Sbjct: 1 EQSVANLVDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI 57
Query: 671 PKISGTL--------KLCGTKAYVAQ---SPWIQSG------KIEDNILFGKEMNRERYN 713
G + + ++ Y + S QSG + DN+ + + +
Sbjct: 58 APDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPA 117
Query: 714 AVLDACSLKKDLEILSFGDQTVIGERGI------NLSGGQKQRIQIARALYQDSDIYLFD 767
+L + + K LE +G RG LSGG +R +ARA+ + D+ +FD
Sbjct: 118 PLLHSTVMMK-LE--------AVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFD 168
Query: 768 DPFSAVDAHTGSHLFQEVLLGLLSS------KTVIYVTHQV-EFLPAADLILVMKDGKIT 820
+PF D T VL+ L+S T + V+H V E L AD ++ D KI
Sbjct: 169 EPFVGQDPIT-----MGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV 223
Query: 821 QAGKYNDL 828
G L
Sbjct: 224 AHGSAQAL 231
|
Length = 269 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 52/204 (25%), Positives = 85/204 (41%), Gaps = 42/204 (20%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTL--FRIVEPAAGQILIDGIDISLIGLHDL 1319
+L+G++ T GE ++G GSGKSTL +T+ E G+IL G DI+ + +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE- 73
Query: 1320 RSRLSII--PQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVT 1377
R+RL I Q P G V+ D +R
Sbjct: 74 RARLGIFLAFQYPPEIPG-VK----------------------NADFLR----------- 99
Query: 1378 ENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ-HFSDCTVLT 1436
E +S G+++ + ++LL + +LDE + +D L+ + + + +VL
Sbjct: 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI 159
Query: 1437 IAH--RITSVIDSDLVLLLNHGLI 1458
I H R+ I D V +L G I
Sbjct: 160 ITHYQRLLDYIKPDRVHVLYDGRI 183
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 54/215 (25%), Positives = 104/215 (48%), Gaps = 33/215 (15%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI--VEPAA- 1301
+ID+ DL + Y ++ ++ T +G +G GKST+++TL R+ V P A
Sbjct: 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR 61
Query: 1302 --GQILIDGIDISLIGLH--DLRSRLSIIPQDPVMFE---------GTVRSNLDPLEEST 1348
G++L+DG D+ G+ +R + ++ Q P F ++ N ++
Sbjct: 62 VEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDL 121
Query: 1349 DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDE 1408
DE + ++L L +EV+ + K G S GQ+Q +C+ R + +L++DE
Sbjct: 122 DELVEKSLRGANLWNEVKDRLDK-------PGGGLSGGQQQRLCIARAIAVEPDVLLMDE 174
Query: 1409 ATASVDT----ATDNLIQQTLRQHFSDCTVLTIAH 1439
+++D A ++LI + L+Q + T++ + H
Sbjct: 175 PCSALDPISTLAIEDLINE-LKQDY---TIVIVTH 205
|
Length = 258 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 30/228 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT------------LKLCGTK 683
L ++N+++ G V + G GSGKS+L+ + G + SG +KL +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 684 AYVA---QSPWIQ--SGKIEDNILFG-KEMN---RERYNAVLDACSLKKDLEILSFGDQT 734
V Q P Q IE +I FG + E N V K+ + I+ +
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRV------KRAMNIVGLDYED 136
Query: 735 VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV-LLGLLSSK 793
+ LSGGQK+R+ IA + + I + D+P + +D + ++ L +
Sbjct: 137 YKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNM 196
Query: 794 TVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSGTDFMELVG 840
T+I V+H +E + AD I+VM GK G ++ + +E +G
Sbjct: 197 TIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE-VETLESIG 243
|
Length = 287 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 3e-08
Identities = 47/218 (21%), Positives = 83/218 (38%), Gaps = 46/218 (21%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----KAY----- 685
L D++ V G + G G+GK++L + I G + SG++ G +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 686 ----------------------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKK 723
VA SG + + RER +L+ L
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD 135
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
+ LS GQ++R++IARAL D + L D+P + + +
Sbjct: 136 LAD-----------RPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGL-NPEETEELA 183
Query: 784 EVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKI 819
E++ L TV+ V H ++ + + AD + V+ G++
Sbjct: 184 ELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRV 221
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 3e-08
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 24/190 (12%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
LK I++++ VA G G GKS+ L L ++ G +++ G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
V Q P I +N+ +G +N + NA + +++ L+ + D+
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQ-RVEETLKGAALWDEVK 137
Query: 736 --IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793
+ E LSGGQ+QR+ IARA+ + L D+P SA+D + + + +E++ L
Sbjct: 138 DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV-EELIHELKKDY 196
Query: 794 TVIYVTHQVE 803
T++ VTH ++
Sbjct: 197 TIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 35/185 (18%)
Query: 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL----RSRLSIIPQ 1328
GE+ I+G +G+GKSTL+ + + PA+G + ++G D H R +S++ Q
Sbjct: 25 GERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD------HTTTPPSRRPVSMLFQ 78
Query: 1329 DPVMFEG-TVRSN----LDP---LEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380
+ +F TV N L+P L + E++ + + D + + G+L
Sbjct: 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQL-------- 130
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN----LIQQTLRQHFSDCTVLT 1436
S GQRQ V L R L++ IL+LDE +++D A L+ Q ++ T+L
Sbjct: 131 ---SGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQER--QLTLLM 185
Query: 1437 IAHRI 1441
++H +
Sbjct: 186 VSHSL 190
|
Length = 232 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 24/193 (12%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSL---LSCILGEVP--KISGTL---------- 677
+ LK+INL + A+ G G GKS+ L+ ++ VP K +G +
Sbjct: 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96
Query: 678 -----KLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGD 732
+L V Q P I DN+ +G +++ + LD ++K L + D
Sbjct: 97 SYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEI-VEKSLRGAAIWD 155
Query: 733 QTV--IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL 790
+ + + LSGGQ+QR+ IAR L + D+ L D+P SA+D + +E++ L
Sbjct: 156 ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDP-ISTLKVEELVQELK 214
Query: 791 SSKTVIYVTHQVE 803
++I VTH ++
Sbjct: 215 KDYSIIIVTHNMQ 227
|
Length = 271 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 51/222 (22%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKS-------SLLSCILGEV-------PKISGTLKL 679
L D+NL+V G + + G GSGKS +LL G+V +
Sbjct: 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83
Query: 680 CGTKAYVAQSP--WIQSGKIEDNILFGKEMN--------RERYNAVLDACSL---KKDLE 726
V Q+P I + +E+++ FG E N RER + L + ++
Sbjct: 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPE-NLGIPPEEIRERVDESLKKVGMYEYRRHAP 142
Query: 727 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786
L LSGGQKQR+ IA L + +FD+P + +D +G +EV+
Sbjct: 143 HL--------------LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP-SGR---REVV 184
Query: 787 -----LGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAG 823
L T+I +TH +E AD I+VM GK+ G
Sbjct: 185 NTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEG 226
|
Length = 280 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 697 IEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTV--IGERGINLSGGQKQRIQIA 754
I DN++ G ++N R LD ++K L + ++ + + G LSGGQ+QR+ IA
Sbjct: 102 IRDNVVAGLKLNGVRNKKDLDE-LVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160
Query: 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK-TVIYVTHQVE 803
RA+ + D+ L D+P SA+D S L E L+ L T++ VTH ++
Sbjct: 161 RAIAVEPDVLLMDEPCSALDPI--STLAIEDLINELKQDYTIVIVTHNMQ 208
|
Length = 258 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 3e-08
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 30/217 (13%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG----------EVPKISGTLKLCG 681
+ L ++L + HG VA+ G GSGKS+LL + G + + T++ G
Sbjct: 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG 75
Query: 682 TKAYVAQSPWIQSGKI------------EDNILFGKEMNRERYNAVLDACSLKKDLEILS 729
A + +G I +N+L G + + + ++ L
Sbjct: 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQ 135
Query: 730 ----FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV 785
G +R LSGGQ+QR+ IARAL Q + + L D+P +++D + + + +
Sbjct: 136 ALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPES-ARIVMDT 194
Query: 786 LLGLLSSK--TVIYVTHQVEF-LPAADLILVMKDGKI 819
L + + TV+ HQV++ L + I+ ++ G +
Sbjct: 195 LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
|
Length = 262 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 3e-08
Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 41/243 (16%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI--VEPAA---GQI 1304
D+ + Y + ++ ++ G ++G +G GK+T ++ + R+ + P A G+I
Sbjct: 9 DVNIYYGDKQ--AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI 66
Query: 1305 LIDGIDISLIGLHD--LRSRLSIIPQDP------VMFEGTVRS-------NLDPLEESTD 1349
L+DG DI + +R R+ ++ Q P +F+ V + D L E +
Sbjct: 67 LLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE 126
Query: 1350 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEA 1409
+L L DEV+ + L + T S GQ+Q +C+ R L +IL++DE
Sbjct: 127 R----SLRGAALWDEVKDR---LKTPAT----GLSGGQQQRLCIARALAVEPEILLMDEP 175
Query: 1410 TASVDTATDNLIQQTLRQHFSDCTVLTIAH------RITSVIDSDLV-LLLNHGLIEE-F 1461
T+++D A+ I+ + T++ + H R++ LV L+ HG ++ F
Sbjct: 176 TSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235
Query: 1462 DNP 1464
NP
Sbjct: 236 TNP 238
|
Length = 252 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-08
Identities = 118/488 (24%), Positives = 178/488 (36%), Gaps = 109/488 (22%)
Query: 364 FRLQQLGIRMRAALIAMIYNK---GLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIH 420
+ L++L +R R L +Y+K G T + +T D E+ D ++
Sbjct: 157 YLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELY 216
Query: 421 D----PWLVLFEVALSILILYKNLGIASLAALFGTV-----IVMLVNIPLGR--VQENFQ 469
P L +V L L LG A LF + ++ + P+G+ V+E
Sbjct: 217 SNLTKPIL---DVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQAL 273
Query: 470 DKLMKSKDERMKATSEILRNMRILKLQGWE-------------MKFLSKIINLRKRETGW 516
+ + R+ SE I QG + ++ L+ II R G+
Sbjct: 274 EGEYRYVHSRLIMNSE-----EIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRF-SYGF 327
Query: 517 LKKYV--YTSAISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYN 574
L V YT + V P F T E M RLL
Sbjct: 328 LDNIVAKYTWSAVGLVAVSIPIF-----DKTHPAFLEMSEEELMQEFYNNGRLL----LK 378
Query: 575 LPDVISMIIQTKVSLQRIASFF--------CLDDLQPD-----LVEKQPSGSSET-ALDI 620
D + ++ + R+A F LDD++ VE+ SG ++
Sbjct: 379 AADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNL 438
Query: 621 VDG------NFSWDISSHNPT--------LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI 666
V G + + P ++ ++ +V G + +CG G GKSSL I
Sbjct: 439 VPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFR-I 497
Query: 667 LGEV-PKISGTLKLCGTKA------YVAQSPWIQSGKIEDNILF---GKEMNRERYNAVL 716
LGE+ P G L TK YV Q P++ G + D I++ ++M R +
Sbjct: 498 LGELWPVYGGRL----TKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLS--- 550
Query: 717 DACSLKKDLE-ILSFGDQTVIGERGIN----------LSGGQKQRIQIARALYQDSDIYL 765
KDLE IL T I ER LSGG+KQRI +AR Y +
Sbjct: 551 -----DKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605
Query: 766 FDDPFSAV 773
D+ SAV
Sbjct: 606 LDECTSAV 613
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 17/196 (8%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LHD 1318
VL I+ GE + G +GSGK+TL+ + + G + + G ++ L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 1319 LRSRLSIIPQDPVMFEG-TVRSNLD-PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKV 1376
LR + I Q + T R N+ LE + + + + + G L +
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPN---LSYQEARERARAMLEAVG-LGDHL 135
Query: 1377 TENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD----NLIQQTLRQHFSDC 1432
N S GQ+Q V + R L+ R K+++ DE TA++D+ + L+Q+ R+ C
Sbjct: 136 DYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ--GC 193
Query: 1433 TVLTIAH--RITSVID 1446
T+L + H RI V D
Sbjct: 194 TILIVTHDNRILDVAD 209
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 59/228 (25%), Positives = 92/228 (40%), Gaps = 65/228 (28%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L D++L + G A+ G G GKS+LL C + SGT+ L
Sbjct: 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77
Query: 684 -AYVAQ------------------SPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKD 724
A + Q SPW+ L+G+ ++ E V A +
Sbjct: 78 LALLPQHHLTPEGITVRELVAYGRSPWLS--------LWGR-LSAEDNARVNQAM---EQ 125
Query: 725 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQE 784
I D+ + +LSGGQ+QR +A L QD+ + L D+P + +D +H Q
Sbjct: 126 TRINHLADRRLT-----DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI---NH--QV 175
Query: 785 VLLGLL-----SSKTVIYVTHQVEFLPAA----DLILVMKDGKITQAG 823
L+ L+ KTV+ V H L A D ++V+ +G + G
Sbjct: 176 ELMRLMRELNTQGKTVVTVLHD---LNQASRYCDHLVVLANGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 55/227 (24%), Positives = 105/227 (46%), Gaps = 28/227 (12%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG----LHD 1318
+ ++ F G+ IVG+TGSGKSTLIQ + +++P G + +D I I+ +
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 1319 LRSRLSIIPQDP--VMFEGTVRSNLD--------PLEESTDEQIWEALDKCQLGDEVRKK 1368
+R R+ ++ Q P +FE TV + L+E + + LG
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLM---DLGFS---- 135
Query: 1369 EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR-- 1426
++++ S GQ + + + +L I++LDE TA +D + + + L+
Sbjct: 136 ----RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL 191
Query: 1427 QHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKS 1472
Q + T++ ++H + V +D V+++ G I +P L ++K
Sbjct: 192 QTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 4e-08
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 17/182 (9%)
Query: 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1320
++ G+S T GE I G G+GK++L++ L + P AG++L G I +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQ 74
Query: 1321 SRLSIIPQDPVMFEGTVRSNLDPL----EESTDEQIWEALDKCQLGDEVRKKEGKLDSKV 1376
L + Q + E T NL DE +WEAL + L G D V
Sbjct: 75 DLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-------GFEDVPV 127
Query: 1377 TENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSD--CTV 1434
S GQ++ V L R+ L R+ + +LDE ++D ++ L QH +
Sbjct: 128 ----RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVI 183
Query: 1435 LT 1436
LT
Sbjct: 184 LT 185
|
Length = 204 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 62/241 (25%), Positives = 99/241 (41%), Gaps = 49/241 (20%)
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILG----EVPKISGTLKLCGTK---------- 683
D+NL + G +A+ G GSGKS ILG + + SG + L G
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 684 -AYVAQSPW--------IQSGKIEDNILFGKEMNRERYNAV--LDACSLKKDLEIL-SFG 731
A + Q+P + + IE GK + R + L+A L E+L +
Sbjct: 64 IATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYP 123
Query: 732 DQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS 791
Q LSGG QR+ IA AL + + D+P + +D + Q +L LL
Sbjct: 124 FQ---------LSGGMLQRVMIALALLLEPPFLIADEPTTDLDV-----VNQARVLKLLR 169
Query: 792 S------KTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINSGTDFM--ELVGAH 842
++ +TH + + AD + VM DG+I + G ++ + +L+ AH
Sbjct: 170 ELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLSAH 229
Query: 843 E 843
Sbjct: 230 L 230
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 5e-08
Identities = 56/229 (24%), Positives = 101/229 (44%), Gaps = 28/229 (12%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
VL IS P G+ ++G +GSGK+TL++ + + +G I G D+S LH
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS--RLHARDR 74
Query: 1322 RLSIIPQDPVMFEG-TVRSNLD-----------PLEESTDEQIWEALDKCQLGDEVRKKE 1369
++ + Q +F TV N+ P + ++ + L+ QL +
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP 134
Query: 1370 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF 1429
+L S GQ+Q V L R L +IL+LDE ++D +++ LRQ
Sbjct: 135 AQL-----------SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH 183
Query: 1430 SDC--TVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSF 1475
+ T + + H ++ +D V++++ G IE+ P + ++ F
Sbjct: 184 EELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232
|
Length = 353 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 51/239 (21%), Positives = 84/239 (35%), Gaps = 49/239 (20%)
Query: 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------- 682
P L +++L + G V + G G GKS+L +LG GT+ G
Sbjct: 21 KQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDR 80
Query: 683 ---------------KAYVAQSP-----WIQSGKIEDNILFGKEMNRERYNAVLDACSLK 722
+ A +P I + + + R +LD L+
Sbjct: 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLR 140
Query: 723 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLF 782
+ + LSGGQ QRI IARAL + + D+ S +D
Sbjct: 141 SE----------DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV-----L 185
Query: 783 QEVLLGLL------SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSGTD 834
Q V+L LL +++TH + + + + VM G+I + L++
Sbjct: 186 QAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHP 244
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 5e-08
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 24/190 (12%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTK------- 683
+ DI++ + A+ G G GKS+ L I L + G + G
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 684 --------AYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
V Q P I +NI + ER +VLD +++ L + D+
Sbjct: 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDE-IVEESLTKAALWDEVK 155
Query: 736 --IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793
+ ++LSGGQ+QR+ IAR L + L D+P SA+D + + + +E++ L
Sbjct: 156 DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI-EELITELKEEY 214
Query: 794 TVIYVTHQVE 803
++I VTH ++
Sbjct: 215 SIIIVTHNMQ 224
|
Length = 268 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 5e-08
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 33/198 (16%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY-- 685
N +KD+++ A+ G G GKS++L I L +++G + L T Y
Sbjct: 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76
Query: 686 -------------VAQSP-WIQSGKIEDNILFGKEMN----RERYNAVLDACSLKKDLEI 727
V Q P + I DN++ G ++N R + ++++ L+
Sbjct: 77 GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESS-----LKR 131
Query: 728 LSFGDQTV--IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV 785
++ D+ + + LSGGQ+QR+ IAR + ++ L D+P SA+D + + +E+
Sbjct: 132 VALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKI-EEL 190
Query: 786 LLGLLSSKTVIYVTHQVE 803
+ L T+I VTH ++
Sbjct: 191 IEELKEKYTIIIVTHNMQ 208
|
Length = 252 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 5e-08
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 24/190 (12%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
+K +N + A+ G G GKS+ L I L +G L G Y
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
V Q P I DNI +G ++ L+ ++K L + D+
Sbjct: 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEI-VEKSLRKAALWDEVS 173
Query: 736 --IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793
+ + + LSGGQ+QR+ +AR L + +I L D+P SA+D + + ++++ L S
Sbjct: 174 DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKI-EDLIQELRGSY 232
Query: 794 TVIYVTHQVE 803
T++ VTH ++
Sbjct: 233 TIMIVTHNMQ 242
|
Length = 286 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 5e-08
Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 55/220 (25%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---KAYVAQSPWI 692
L I+L+V G V +CG G+GKS+L+ + G P GT + Y + SP +
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP--------HGTWDGEIYWSGSP-L 67
Query: 693 QSGKIED-----------------------NILFGKEM----NRERYNAVLDAC-SLKKD 724
++ I D NI G E+ R YNA+ +L ++
Sbjct: 68 KASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRE 127
Query: 725 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQE 784
L++ + +G+ G GGQ+Q ++IA+AL + + + + D+P S++ E
Sbjct: 128 LQLDADNVTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKE-----TE 178
Query: 785 VLLGL---LSSKTV--IYVTHQVEFLPA-ADLILVMKDGK 818
+LL + L + V +Y++H++ + A D I V++DG+
Sbjct: 179 ILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 5e-08
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA--GQILIDGIDISLIGLHDL- 1319
L GI GE G+ G G+GKSTL++ L + G+I G + + D
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 1320 RSRLSIIPQDPVMF-EGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLD-SKVT 1377
R+ + II Q+ + E +V N+ E T A + L + +E +LD VT
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 1378 ENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA-TDNL--IQQTLRQHFSDCTV 1434
++ GQ+QLV + + L K++++L+LDE ++S+ T+ L I + L+ H C
Sbjct: 137 RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVAC-- 194
Query: 1435 LTIAHRITSV 1444
+ I+H++ V
Sbjct: 195 VYISHKLNEV 204
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 5e-08
Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 39/227 (17%)
Query: 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL-----HDL 1319
G++ GE G+VG +G GKST + + +V+ G++ G D L+G+ +
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD--LLGMKDDEWRAV 96
Query: 1320 RSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEAL-------DKCQLGDEVR---KKE 1369
RS + +I QDP+ ++L+P + E I E L + ++ D V+ K
Sbjct: 97 RSDIQMIFQDPL-------ASLNP-RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKV 148
Query: 1370 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD----NLIQQTL 1425
G L + + +S GQ Q + + R L+ K+++ DE +++D + NL+QQ
Sbjct: 149 GLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ 208
Query: 1426 RQHFSDCTVLTIAHRITSV---IDSDLVLLLNH----GLIEE-FDNP 1464
R+ +++ IAH + V D LV+ L H G +E + NP
Sbjct: 209 RE--MGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNP 253
|
Length = 331 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 6e-08
Identities = 56/243 (23%), Positives = 101/243 (41%), Gaps = 40/243 (16%)
Query: 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQS 689
S P+++D++ + G + + G VG+ ++ ++ + G K +GT+ L G K +
Sbjct: 258 SLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG-KKINNHN 316
Query: 690 PW--IQSG-----------------KIEDNILFGKEMNRERYN---AVLDACSLKKD--- 724
I G I N L N Y +LD +K D
Sbjct: 317 ANEAINHGFALVTEERRSTGIYAYLDIGFNSLIS---NIRNYKNKVGLLDNSRMKSDTQW 373
Query: 725 ----LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSH 780
+ + + G +T IG +LSGG +Q++ I R L +I + D+P +D
Sbjct: 374 VIDSMRVKTPGHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFE 429
Query: 781 LFQEVLLGLLSSKTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELV 839
++Q + K +I ++ ++ E L D ILVM +G + AG + + + + L
Sbjct: 430 IYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLV--AGIVDTKTTTQNEILRLA 487
Query: 840 GAH 842
H
Sbjct: 488 SLH 490
|
Length = 491 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 7e-08
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 22/189 (11%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
IDL+ + Y + +V+ +S T GE G++G G+GKST+ + L ++ P G+I
Sbjct: 5 IDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 62
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQ-DPVMFEGTVRSNLDPL-------EESTDEQIWEALD 1357
+ G + R + ++PQ D + E TVR NL + I L+
Sbjct: 63 VLGEPVP-SRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLE 121
Query: 1358 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT 1417
+L E K D +V S G ++ + L R L+ ++L+LDE T +D
Sbjct: 122 FARL-------ESKADVRVAL----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 170
Query: 1418 DNLIQQTLR 1426
+LI + LR
Sbjct: 171 RHLIWERLR 179
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 30/195 (15%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322
L +S GE I+G G+GK+T++ + P G +L G D++ + H + +R
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI-AR 76
Query: 1323 LSIIP--QDPVMFEG-TVRSNLD---------------PLEESTDEQIWEALDKCQLGDE 1364
I Q P +FE TV NL+ L ++I E L+ L DE
Sbjct: 77 AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE 136
Query: 1365 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424
+ G L S GQ+Q + +G +L++ K+L+LDE A + +
Sbjct: 137 ADRLAGLL-----------SHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAEL 185
Query: 1425 LRQHFSDCTVLTIAH 1439
L+ +V+ + H
Sbjct: 186 LKSLAGKHSVVVVEH 200
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 7e-08
Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 4/176 (2%)
Query: 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325
++ TF + T +G G+GK+T + L ++ P +G +L+ G DI L +R L +
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE-TNLDAVRQSLGM 1007
Query: 1326 IPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1385
PQ ++F + + WE + QL E ++ L K E ++ S
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWE---EAQLEMEAMLEDTGLHHKRNEEAQDLSG 1064
Query: 1386 GQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRI 1441
G ++ + + + +K+++LDE T+ VD + I L ++ S T++ H +
Sbjct: 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHM 1120
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 8e-08
Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 48/214 (22%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI--- 692
L D++L + G + + G G+GK++LL + G + G +++ G + +
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 693 --------QSGKI------EDNILF-----GKEMN--RERYNAVLDACSL--KKDLEILS 729
Q ++ +N+ GK+ + R A L L K D +
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD----A 133
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGS---HLFQEV- 785
F +Q LSGG++QR+ IARA+ + L D+P +D L + +
Sbjct: 134 FPEQ---------LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLN 184
Query: 786 LLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGK 818
G TVI TH + + A ++++ DG+
Sbjct: 185 KRGT----TVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 8e-08
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 38/177 (21%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI--DGIDISLIGLH-- 1317
VL+ +S + GE + G +GSGKSTL+++L+ P GQIL+ +G + L+
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 1318 ---DLRSR--------LSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVR 1366
++R L +IP+ LD + E + + R
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSA---------LDVVAEPLLARGVPR-------EVAR 129
Query: 1367 KKEGKLDSKVTENGENWSM-------GQRQLVCLGRVLLKRSKILMLDEATASVDTA 1416
K L +++ WS+ G++Q V + R + IL+LDE TAS+D
Sbjct: 130 AKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDAT 186
|
Length = 235 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 48/208 (23%), Positives = 77/208 (37%), Gaps = 39/208 (18%)
Query: 1224 PSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTG 1283
P+ I E I+L ++ VR + +L +S GE IVG G
Sbjct: 20 KKRHPIEINEPL----------IELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNG 67
Query: 1284 SGKSTLIQTLFRIVEPAAGQILIDG-----IDI-----SLIGL------HDLRSRLSIIP 1327
+GK+TL+ L P++G + + G + IGL R R ++
Sbjct: 68 AGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRD 127
Query: 1328 QDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387
V+ G S E+ T E L Q E + S G+
Sbjct: 128 ---VVLSGFFASIGIYQEDLTAED----LAAAQWLLE----LLGAKHLADRPFGSLSQGE 176
Query: 1388 RQLVCLGRVLLKRSKILMLDEATASVDT 1415
++ V + R L+K ++L+LDE +D
Sbjct: 177 QRRVLIARALVKDPELLILDEPAQGLDL 204
|
Length = 257 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 21/229 (9%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-----TKAYVAQ 688
+ +N KV G G G+GK++ + + + SGT ++ G V +
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66
Query: 689 SPWI--QSGKIEDNILFGKEMNRERYNAVLDACSLKKDL------EILSFGDQTVIGERG 740
S I Q + D L G+E N E + L KD E+L + +R
Sbjct: 67 SIGIVPQYASV-DEDLTGRE-NLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRP 121
Query: 741 I-NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVT 799
+ SGG ++R+ IA +L D+ D+P + +D T ++ + T++ T
Sbjct: 122 VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTT 181
Query: 800 HQVEFLPA-ADLILVMKDGKITQAGKYNDLINS-GTDFMELVGAHEQAL 846
H +E D I ++ G+I G +L G D +E Q+L
Sbjct: 182 HYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSL 230
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 1e-07
Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 39/250 (15%)
Query: 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI------LGEV 670
A+ + + +F +D L+ ++++++ A+ G G GKS+ L C+ EV
Sbjct: 7 AIKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEV 63
Query: 671 PKISGTLKLCGTKAY---------------VAQSPWIQSGKIEDNILFGKEMNRERYNAV 715
++ G ++ Y V P + + DN+ +G ++ R
Sbjct: 64 -RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLE 122
Query: 716 LDAC--SLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAV 773
+D S KD ++ + I + ++LSGGQ+QR+ IARAL + L D+P +
Sbjct: 123 IDDIVESALKDADLWD-EIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGL 181
Query: 774 DAHTG---SHLFQEVLLGLLSSKTVIYVTH---QVEFLPAADLILVMKDGKITQA---GK 824
D L Q L L S T++ V+H QV L + +I Q G
Sbjct: 182 DPIASMKVESLIQS--LRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGL 239
Query: 825 YNDLINSGTD 834
+ NS D
Sbjct: 240 TKKIFNSPHD 249
|
Length = 261 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 1e-07
Identities = 96/468 (20%), Positives = 171/468 (36%), Gaps = 76/468 (16%)
Query: 401 IINFMTVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAAL----FGTVIVML 456
+I +T D +++ F +I P + + IA LA L F I +
Sbjct: 112 LIPLLTHDIDQINAFL-FIFPPIAIALAIFF--------FCIAYLAYLSVPMFAITISAI 162
Query: 457 VNIPLGRVQE--------NFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIIN 508
+ +G + F +D + T I + LK+ G +
Sbjct: 163 I---IGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHG-- 217
Query: 509 LRKRETG-WLKKYVYTSAISSFVFWGAPTFVSVATFGT--CILLNVPLESGKMLSAIATF 565
+E+ + I +F A F + F C L + + +AI+ F
Sbjct: 218 -AIQESANNIADLHI---IEILIFIAAENFGQLLFFLLIGCALFAAAMFASIDAAAISAF 273
Query: 566 RL----LQVPIYNLPDVISMIIQTKVSLQRIASF-FCLDDLQPDLVEKQPSGSSETALDI 620
L ++ P+ L + ++ Q +++ QR+A F ++ +P + S + +
Sbjct: 274 VLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEP-----ELELSDADNVLL 328
Query: 621 VDGNFSWDI--------------SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI 666
+ + S D S L I+L++ G V + G G GKS+L
Sbjct: 329 LAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLF 388
Query: 667 LGEVPKISGTLKLCGTKAYVAQSP----WIQSGKIEDNILF--------GKEMNRERYNA 714
G G + L G A A S + S D LF G+ + +
Sbjct: 389 CGLYIPQEGEILLDG-AAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQ 447
Query: 715 VLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVD 774
L + ++I G T LS GQ++R+ + A +D I LFD+ + D
Sbjct: 448 YLQRLEIADKVKIEDGGFSTTT-----ALSTGQQKRLALICAWLEDRPILLFDEWAADQD 502
Query: 775 AHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPAADLILVMKDGKITQ 821
++E+L L KT+I ++H ++ AD I+ + G I +
Sbjct: 503 PAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-07
Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 27/204 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
L ++NLKV A+ G G+GKS+LL C+ G K SG++ G + S
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSS----KE 69
Query: 696 KIEDNI-LFGKEMNRERYNAVLDACSLKKDLEILSFGDQ--------TVIGERGI----- 741
+E+ I + +E+N +V+D L + F DQ + E I
Sbjct: 70 ALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPR 129
Query: 742 ----NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK--TV 795
LS Q Q I+IA+A ++ I + D+P S++ +HLF ++ L + +
Sbjct: 130 AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT--IIRKLKERGCGI 187
Query: 796 IYVTHQV-EFLPAADLILVMKDGK 818
+Y++H++ E D I +++DG+
Sbjct: 188 VYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 1e-07
Identities = 53/200 (26%), Positives = 97/200 (48%), Gaps = 11/200 (5%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
P + +N+ + A G G+GK++ LS + G +P SGT+ + G Q
Sbjct: 944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQ 1003
Query: 694 SGKI--EDNILFGKEMNRER--YNAVLDACSLKK-DLEILSFGDQTVI----GERGINLS 744
S + + NILF E + A L S ++ LE+ + + T + E +LS
Sbjct: 1004 SLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLS 1063
Query: 745 GGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQV-E 803
GG ++++ +A A D+ + + D+P S VD ++ ++ ++LL S +T+I TH + E
Sbjct: 1064 GGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIW-DLLLKYRSGRTIIMSTHHMDE 1122
Query: 804 FLPAADLILVMKDGKITQAG 823
D I ++ G++ +G
Sbjct: 1123 ADLLGDRIAIISQGRLYCSG 1142
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-07
Identities = 62/218 (28%), Positives = 94/218 (43%), Gaps = 50/218 (22%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC-GTKA-YVAQSPWIQ 693
LKDI+L F G ++ V G G+GKS+LL + G + +G + G K Y+ Q P +
Sbjct: 21 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLD 80
Query: 694 SGK-IEDNILFG-KEMNR--ERYNAV------------------------LDAC---SLK 722
K + +N+ G E+ +R+N + +DA L
Sbjct: 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLD 140
Query: 723 KDLEI------LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAH 776
+ LEI D V LSGG+++R+ + R L D+ L D+P + +DA
Sbjct: 141 RKLEIAMDALRCPPWDADVT-----KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAE 195
Query: 777 TGSHLFQEVLLGLLSSK-TVIYVTHQVEFLP-AADLIL 812
+ + L Q L TV+ VTH FL A IL
Sbjct: 196 SVAWLEQH----LQEYPGTVVAVTHDRYFLDNVAGWIL 229
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 65/246 (26%), Positives = 101/246 (41%), Gaps = 31/246 (12%)
Query: 1264 QGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323
Q IS P GE G +G G+GKST ++ L ++ P +G++ ++G L
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG----KDPFRRREEYL 96
Query: 1324 SIIPQDPVMFEGTVRSNLD---PLEES--TDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1378
I VM + L P +S + I+E D DE ++ L +
Sbjct: 97 RSI--GLVMG---QKLQLWWDLPALDSLEVLKLIYEIPD-----DEFAERLDFLTEILDL 146
Query: 1379 NGE-NW-----SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS-- 1430
G W S+GQR L LL K+L LDE T +D I++ L+++
Sbjct: 147 EGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER 206
Query: 1431 DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSS 1489
TVL H + D VLL++ G + FD L+ + + + E L+ + S
Sbjct: 207 QATVLLTTHIFDDIATLCDRVLLIDQGQL-VFDGTLAQLQEQFGPYKEFSVE--LKQAKS 263
Query: 1490 FENLAG 1495
LA
Sbjct: 264 LSQLAL 269
|
Length = 325 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 34/210 (16%)
Query: 639 INLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP--WIQSG- 695
I+ V G V + G VG+G+S L+ + G + +G + L G K +SP I++G
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG-KPIDIRSPRDAIRAGI 330
Query: 696 ----------------KIEDNILFGKEMNRERYNAVLD-------ACSLKKDLEILSFGD 732
+ DNI + R +++ A + L I +
Sbjct: 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSR 390
Query: 733 QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS 792
+ +I NLSGG +Q+ + R L +D + L D+P +D ++ V+ L +
Sbjct: 391 EQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYN-VIYELAAQ 445
Query: 793 K-TVIYVTHQV-EFLPAADLILVMKDGKIT 820
V++V+ + E L AD I+VM++G+I
Sbjct: 446 GVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
|
Length = 501 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 45/222 (20%)
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT----------LKLCGT---- 682
+D++ ++ G + + G GSGK++LL CI G + +GT L
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 683 KAYVAQSPWIQSGKIEDNILFGKEMN-------RERYNAVLD---------ACSLKKDLE 726
+ + ++ W G + N G M ER A+ A +++E
Sbjct: 83 RRRLLRTEW---GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVE 139
Query: 727 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786
I D I + SGG +QR+QIAR L + D+P +D + L ++L
Sbjct: 140 I----DLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLL 194
Query: 787 LGLLSSK--TVIYVTHQ---VEFLPAADLILVMKDGKITQAG 823
GL+ V+ VTH L AD ++VMK G++ ++G
Sbjct: 195 RGLVRELGLAVVIVTHDLAVARLL--ADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 41/194 (21%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------A 684
L IN+ + G V + G G+GKS+LL I E SGT+++ G
Sbjct: 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 685 YVAQSPWI--QSGK------IEDNILFGKEMN-------RERYNAVLDACSLKKDLEILS 729
Y+ + + Q + + +N+ F E+ R+R A L+ L L
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP 134
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGS---HLFQEVL 786
LSGG++QR+ IARA+ I + D+P +D T +L +++
Sbjct: 135 AE-----------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKI- 182
Query: 787 LGLLSSKTVIYVTH 800
+ TV+ TH
Sbjct: 183 --NKAGTTVVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-07
Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 46/202 (22%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-- 1319
VL+GIS GE IVG +GSGKSTL+ L + +P +G + G D++ + L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 1320 --RSRLSIIPQD---------------PVMFEGTVRSNLDPLEESTDEQIWEALDKCQLG 1362
R I Q P ++ G R + + E L + L
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLER-------KQRLLRAQELLQRLGLE 135
Query: 1363 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ 1422
D V + +L S GQ+Q V + R L+ ++++ DE T ++D+ + +
Sbjct: 136 DRVEYQPSQL-----------SGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVM 184
Query: 1423 QTLRQ-----HFSDCTVLTIAH 1439
L Q H TV+ + H
Sbjct: 185 AILHQLRDRGH----TVIIVTH 202
|
Length = 648 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 2e-07
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVD-AHTGSHLFQEVL------LGLLSSKT 794
LSGGQKQR+ IARAL + + L D+ SA+D A T S L E+L LGL T
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL--ELLKDINRELGL----T 193
Query: 795 VIYVTHQVEFLPA-ADLILVMKDGKITQAG 823
++ +TH+++ + D + V+ G++ + G
Sbjct: 194 IVLITHEMDVVKRICDRVAVIDAGRLVEQG 223
|
Length = 343 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 47/222 (21%), Positives = 87/222 (39%), Gaps = 47/222 (21%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----------- 684
++ ++ +V G + G G+GK++ + + + SG + G
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI 75
Query: 685 -YVAQSPWIQSGKIEDNILFGKE--------------MNRERYNAVLDACSLKKDLEILS 729
V Q D+ L G E RER + +LD + +L
Sbjct: 76 GIVFQDL------SVDDELTGWENLYIHARLYGVPGAERRERIDELLDF------VGLLE 123
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789
D+ V SGG ++R++IAR+L ++ D+P +D T +H++ E + L
Sbjct: 124 AADRLVK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW-EYIEKL 177
Query: 790 LSSK--TVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDL 828
T++ TH +E D + ++ G+I G +L
Sbjct: 178 KEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 33/194 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
+K++NL V G A+ G G GK++ L I L +++G + L G Y
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 686 ----------VAQSP-WIQSGKIEDNILFGKEM----NRERYNAVLDACSLKKDLEILSF 730
V Q P + + DN++ G ++ +R+ V + + L +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE-----RSLRGAAL 134
Query: 731 GDQTV--IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLG 788
D+ + LSGGQ+QR+ IARAL + +I L D+P SA+D + + + ++++
Sbjct: 135 WDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI-EDLMTD 193
Query: 789 LLSSKTVIYVTHQV 802
L T+I VTH +
Sbjct: 194 LKKVTTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-07
Identities = 62/251 (24%), Positives = 112/251 (44%), Gaps = 49/251 (19%)
Query: 1261 LVLQGISCTFPG-------------GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID 1307
L GI TFPG G+ ++G G+GKSTL++ L +P AG ILID
Sbjct: 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILID 64
Query: 1308 GIDISLIGLHD-LRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEA--------LDK 1358
G ++ L + ++II Q+ +L P E + E ++ +++
Sbjct: 65 GQEMRFASTTAALAAGVAIIYQE---------LHLVP-EMTVAENLYLGQLPHKGGIVNR 114
Query: 1359 CQLGDEVRKKEGKLDSKVTENG--ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT- 1415
L E R++ L + + + S+GQRQ+V + + L + ++++ DE T+S+
Sbjct: 115 RLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAR 174
Query: 1416 ATDNL--IQQTLRQHFSDCTV-LTIAHRITSVID-SDLVLLLNHG-LIEEFDNPANLLEN 1470
+ L + + LR ++ V L ++HR+ + D + + G + FD+ A +
Sbjct: 175 EIEQLFRVIRELR---AEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQV--- 228
Query: 1471 KSSSFSQLVAE 1481
QLV
Sbjct: 229 ---DRDQLVQA 236
|
Length = 501 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 36/200 (18%)
Query: 628 DISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVA 687
+ HN L+++++ + + V V G GSGKS+L++ L SG +L +
Sbjct: 5 GANVHN--LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA----SGKARLISFLPKFS 58
Query: 688 QSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQ 747
++ I +++ I G L L+ G + LSGG+
Sbjct: 59 RNKLIFIDQLQFLIDVG--------------------LGYLTLGQKLS------TLSGGE 92
Query: 748 KQRIQIARALYQDSD--IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK-TVIYVTHQVEF 804
QR+++A L+ + +++ D+P + + + L EV+ GL+ TVI + H ++
Sbjct: 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILIEHNLDV 151
Query: 805 LPAADLILVMKDGKITQAGK 824
L +AD I+ G GK
Sbjct: 152 LSSADWIIDFGPGSGKSGGK 171
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-07
Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 21/207 (10%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA---GQILIDGIDISLIGLHDL 1319
L +S GE + G G+GKSTL++ L V P G+I+ +G ++ + D
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGTYEGEIIFEGEELQASNIRDT 79
Query: 1320 -RSRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQI--WEAL-DKCQ-LGDEVRKKEGKLD 1373
R+ ++II Q+ + + +V N+ E T I ++A+ + Q L ++ KLD
Sbjct: 80 ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQL-----KLD 134
Query: 1374 SKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASV---DTATDNLIQQTLRQHFS 1430
N +GQ+QLV + + L K++++L+LDE TAS+ +TA I + L+ H
Sbjct: 135 INPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGI 194
Query: 1431 DCTVLTIAHRITSVID-SDLVLLLNHG 1456
C + I+H++ V SD + ++ G
Sbjct: 195 AC--IYISHKLNEVKAISDTICVIRDG 219
|
Length = 506 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 25/149 (16%)
Query: 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQ 1328
+ E GI+G G GK+T I+ L +++P G I I+ +S I
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-------KPQYIKAD 73
Query: 1329 DPVMFEGTVRSNL-DPLEESTDEQIW--EALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1385
+EGTVR L ++ + E Q+ E LD +V E S
Sbjct: 74 ----YEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI-------EQILDREVPE----LSG 118
Query: 1386 GQRQLVCLGRVLLKRSKILMLDEATASVD 1414
G+ Q V + L K + I +LDE +A +D
Sbjct: 119 GELQRVAIAACLSKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 59/234 (25%), Positives = 96/234 (41%), Gaps = 51/234 (21%)
Query: 629 ISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSC--ILGEVP----KISGTLKLCG- 681
+ + P + ++L + G +A+ G GSGKS L+C LG +P + +G + L G
Sbjct: 12 LQAAQPLVHGVSLTLQRGRVLALVGGSGSGKS--LTCAAALGILPAGVRQTAGRVLLDGK 69
Query: 682 ----------TKAYVAQSP--------WIQSGKIEDNILFGKEMNRERYNAVLDACSLKK 723
A + Q+P + + E + GK + A L+A L+
Sbjct: 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLEN 129
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
+L +SGG QR+ IA AL ++ + D+P + +D + Q
Sbjct: 130 AARVLKL--------YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDV-----VAQ 176
Query: 784 EVLLGLLSSKT------VIYVTHQ---VEFLPAADLILVMKDGKITQAGKYNDL 828
+L LL S ++ VTH V L AD + VM G+I + G L
Sbjct: 177 ARILDLLESIVQKRALGMLLVTHDMGVVARL--ADDVAVMSHGRIVEQGDVETL 228
|
Length = 254 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-07
Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 43/222 (19%)
Query: 609 QPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-- 666
++ + + + + NF + LK+INL + A G G GKS+LL
Sbjct: 5 SMVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNR 61
Query: 667 ----------LGEV---------PKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFG--- 704
GE+ PK L L V Q P I DNI FG
Sbjct: 62 MYELYPEQRAEGEILLDGENILTPKQDIAL-LRAKVGMVFQKPTPFPMSIYDNIAFGVRL 120
Query: 705 ------KEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 758
EM+ ER L +L +++ D+ + + G +LSGGQ+QR+ IAR +
Sbjct: 121 FEKLSRAEMD-ERVEWALTKAALWNEVK-----DK--LHQSGYSLSGGQQQRLCIARGIA 172
Query: 759 QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTH 800
++ L D+P SA+D + + +E++ L TV+ VTH
Sbjct: 173 IRPEVLLLDEPCSALDPISTGRI-EELITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 47/228 (20%)
Query: 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------ 683
H + I+L + G + + G GSGKS+L +L +P G ++ G
Sbjct: 297 VDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-QGEIRFDGQDIDGLSR 355
Query: 684 ----------------AYVAQSPWIQSGKI--EDNILFGKEMNR-ERYNAVLDACSLKKD 724
Y + SP + G+I E + +++ ER V++A
Sbjct: 356 KEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEA------ 409
Query: 725 LEILSFG-DQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
LE G D SGGQ+QRI IARAL ++ L D+P SA+D Q
Sbjct: 410 LE--EVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSV-----Q 462
Query: 784 EVLLGLLSSK------TVIYVTHQVEFLPA-ADLILVMKDGKITQAGK 824
+L LL + ++++H + + A ++VM+DGKI + G
Sbjct: 463 AQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGP 510
|
Length = 534 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 60/221 (27%), Positives = 92/221 (41%), Gaps = 29/221 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS- 694
+ +I+L V + G G+GKS+LL I G + SG + G PW +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG-------HPWTRKD 68
Query: 695 -----GKIEDNILFGKEMNRERYNAVLDACSLKKD--LEILSFGDQTVIGERGI-NLSGG 746
IE L+ RE L E+L+ D T G++ S G
Sbjct: 69 LHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLG 128
Query: 747 QKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV--LLGLLSSK--TVIYVTH-- 800
KQR+ IA AL + + D+P + +D QE+ L+ + TVI +H
Sbjct: 129 MKQRLGIAIALLNHPKLLILDEPTNGLDPIG----IQELRELIRSFPEQGITVILSSHIL 184
Query: 801 -QVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVG 840
+V+ L AD I ++ +G + GK N N F+E+V
Sbjct: 185 SEVQQL--ADHIGIISEGVLGYQGKINKSENLEKLFVEVVK 223
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 50/210 (23%), Positives = 98/210 (46%), Gaps = 29/210 (13%)
Query: 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676
A+ + D +F ++ S ++ I++ ++ A+ G G GKS+ + L + ++ G
Sbjct: 7 AIKVKDLSFYYNTSK---AIEGISMDIYRNKVTAIIGPSGCGKSTFIK-TLNRISELEGP 62
Query: 677 LKLCGTKAYVAQS---PWIQSGK------------------IEDNILFGKEMNRERYNAV 715
+K+ G + Q+ P I + I +N+ +G ++ + A
Sbjct: 63 VKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQAD 122
Query: 716 LDACSLKKDLEILSFGDQTV--IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAV 773
LD ++ L+ + + + + + LSGGQ+QR+ IARAL + L D+P SA+
Sbjct: 123 LDEI-VESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSAL 181
Query: 774 DAHTGSHLFQEVLLGLLSSKTVIYVTHQVE 803
D + +E++ L S T+ VTH ++
Sbjct: 182 DP-IATMKVEELIHSLRSELTIAIVTHNMQ 210
|
Length = 259 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 3e-07
Identities = 51/205 (24%), Positives = 81/205 (39%), Gaps = 50/205 (24%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
LK +NL + G A+ G GSGKS+L I+G PK + G
Sbjct: 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPKYE-----------------VTEG 57
Query: 696 KI---EDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLS-------- 744
+I ++I ER + L+F Q G+ +
Sbjct: 58 EILFKGEDITD-LPPE-ERARLGI----------FLAF--QYPPEIPGVKNADFLRYVNE 103
Query: 745 ---GGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKT-VIYVTH 800
GG+K+R +I + L + D+ + D+P S +D L EV+ L V+ +TH
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI-DALRLVAEVINKLREEGKSVLIITH 162
Query: 801 QVEFL--PAADLILVMKDGKITQAG 823
L D + V+ DG+I ++G
Sbjct: 163 YQRLLDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 4e-07
Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 23/170 (13%)
Query: 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-----------LRS 1321
GE GI G G+G++ L + LF ++G+IL+DG + + D R
Sbjct: 285 GEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRK 344
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRK----KEGKLDSKVT 1377
++ + E ++L S I ++ L + + K + +
Sbjct: 345 SEGLVLDMSI-AENITLASLRRF--SRRGLIDRRKER-ALAERYIRRLRIKTPSPEQPI- 399
Query: 1378 ENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ 1427
S G +Q V L R L K+L+LDE T +D I + +R+
Sbjct: 400 ---GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRE 446
|
Length = 500 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 46/221 (20%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 683
L ++L++ G V V G+ G+GKS+LL+ I G++ SG + + G
Sbjct: 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKR 78
Query: 684 ----AYVAQSPWIQSG---KIEDNIL----------FGKEMNRERYNAVLDACSLKKDLE 726
A V Q P + IE+N+ +N R S ++ L
Sbjct: 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERR------RSSFRERLA 132
Query: 727 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786
L G + + +R LSGGQ+Q + + A I L D+ +A+D T + +
Sbjct: 133 RLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVME--- 189
Query: 787 LGLLSSK-------TVIYVTHQVE-FLPAADLILVMKDGKI 819
L++K T + VTH +E L + ++++ GKI
Sbjct: 190 ---LTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 44/236 (18%)
Query: 626 SWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK------L 679
+K ++ + G +A+ G GSGKS+L + G + SG +
Sbjct: 19 GLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLH 78
Query: 680 CGTKAYVAQ-------------SPWIQSGKIED-----NILFGKEMNRERYNAVLDACSL 721
G ++ ++ +P ++ G+I D N E R++ L L
Sbjct: 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL 138
Query: 722 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL 781
D ++ L+ GQKQR+ +ARAL I + D+ +++D S L
Sbjct: 139 LPDH--ANYYPHM--------LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQL 188
Query: 782 FQEVL-----LGLLSSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINS 831
+L G+ + IYVT + + +D +LVM +G++ + G D++ S
Sbjct: 189 INLMLELQEKQGI----SYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 4e-07
Identities = 50/243 (20%), Positives = 96/243 (39%), Gaps = 34/243 (13%)
Query: 606 VEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSC 665
V K PS E L++ D S +KD++ +V G V + G G+G+S L+
Sbjct: 246 VVKPPSTPGEVVLEVED--LSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEA 303
Query: 666 ILGEVPKISGTLKLCGTKAYVAQSP--WIQSG-----------------KIEDNILFGKE 706
I G SG + L G SP + G + +N++ G+
Sbjct: 304 ISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRH 363
Query: 707 MN-------RERYNAVLDACS-LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 758
A+ L ++ ++ + +LSGG +Q++ +AR L
Sbjct: 364 DKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELA 419
Query: 759 QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDG 817
+ D+ + P +D + + +L + K V+ ++ ++ + +D I V+ +G
Sbjct: 420 RRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEG 479
Query: 818 KIT 820
+I
Sbjct: 480 RIV 482
|
Length = 501 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 23/218 (10%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW-IQS 694
LKDI +K+ + + G GSGKS+LL + + +K+ G Y + + I +
Sbjct: 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85
Query: 695 GKIEDNI-LFGKEMNRERYNAVLDACS-------LKKDLEILSFGDQTV----------- 735
K+ + + ++ N + ++ D + +K+ EI ++ +
Sbjct: 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD 145
Query: 736 -IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKT 794
+ LSGGQ+QR+ IARAL + L D+P S +D S ++++ L +
Sbjct: 146 RLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI-VNSQAIEKLITELKNEIA 204
Query: 795 VIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINS 831
++ V+H + + AD + + +G++ + G N++ S
Sbjct: 205 IVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
Length = 257 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 4e-07
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 28/231 (12%)
Query: 1246 IDLLDLQVRYAPQMPL---VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1302
I+L ++ Y P L ++ T G T +G TGSGKST++Q L + P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1303 QILIDGIDISLIG----LHDLRSRLSIIPQDP--VMFEGTV-------RSNLDPLEESTD 1349
+ +D I+ + +R ++ ++ Q P +FE TV N +E +
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 1350 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEA 1409
E L + + + +K N S GQ + V + +L KIL+LDE
Sbjct: 123 ALAREKLALVGISESLFEK----------NPFELSGGQMRRVAIAGILAMEPKILVLDEP 172
Query: 1410 TASVDTATDNLIQQTLRQ-HFSDCTVLTIAHRITSVID-SDLVLLLNHGLI 1458
TA +D + ++ H S T++ + H + V + +D V +L G +
Sbjct: 173 TAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKL 223
|
Length = 280 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 38/220 (17%)
Query: 628 DISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVA 687
D+ + ++ V G + G G+GK++ L + G + +G + G V
Sbjct: 13 DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD--VV 70
Query: 688 QSPWIQSGKIEDNILFGKE--------------------MNRERYNAVLDACSLKKDLEI 727
+ P + + + + A L+ L L +
Sbjct: 71 KEP--AEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLE--ELADRLGM 126
Query: 728 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL 787
D+ R S G +Q++ IARAL D + L D+P + +D + +E +
Sbjct: 127 EELLDR-----RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV-MATRALREFIR 180
Query: 788 GLLSS-KTVIYVTH---QVEFLPAADLILVMKDGKITQAG 823
L + K +++ TH +VE L D ++V+ G++ G
Sbjct: 181 QLRALGKCILFSTHIMQEVERL--CDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-07
Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 52/224 (23%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
P + D++ + G + V G +G+G++ L+ + G +P+ SG + L G V +SP Q
Sbjct: 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDG-HEVVTRSP--Q 322
Query: 694 SGKIEDNILFGKEMNRERYNAVL------------------DACSLKKDLEILSFGD--- 732
G + + I++ E +R+R VL SLK E + D
Sbjct: 323 DG-LANGIVYISE-DRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIR 380
Query: 733 ---------QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
+ IG LSGG +Q++ IAR L + + D+P VD ++Q
Sbjct: 381 LFNIKTPSMEQAIG----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQ 436
Query: 784 EVLL------GLLSSKTVIYVTHQV-EFLPAADLILVMKDGKIT 820
L+ GL ++I V+ ++ E L +D ILVM +G+I+
Sbjct: 437 --LINQFKAEGL----SIILVSSEMPEVLGMSDRILVMHEGRIS 474
|
Length = 501 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 7e-07
Identities = 57/249 (22%), Positives = 110/249 (44%), Gaps = 34/249 (13%)
Query: 1244 GKIDLLDLQVRYAPQMPL---VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA 1300
I L ++ YA + P L S TF + T ++G TGSGKST+IQ ++
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 1301 AGQILIDGIDI-----SLIGLHDLRSRLSIIPQDP--VMFEGTVRS-------NLDPLEE 1346
GQ ++ I + + LR + ++ Q P +F+ T+ NL ++
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 1347 STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILML 1406
+++ E L QL ++ K+ S +G GQ++ V L ++ L+L
Sbjct: 125 EAYKKVPELLKLVQLPEDYVKR-----SPFELSG-----GQKRRVALAGIIAMDGNTLVL 174
Query: 1407 DEATASVDTATD----NLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEF 1461
DE T +D + NL ++ +++ ++ + H + V+ +D V++++ G +
Sbjct: 175 DEPTGGLDPKGEEDFINLFERLNKEYKK--RIIMVTHNMDQVLRIADEVIVMHEGKVISI 232
Query: 1462 DNPANLLEN 1470
+P + N
Sbjct: 233 GSPFEIFSN 241
|
Length = 289 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 8e-07
Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 24/190 (12%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-----LGEVPKISGTLKLCGTKAY----- 685
LK++NL + A+ G G GKS+ + + L + G + L G Y
Sbjct: 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78
Query: 686 ----------VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQT- 734
V Q P I DN+ +G ++ E ++ +++ L+ + D+
Sbjct: 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEE-RVEESLKAAALWDEVK 137
Query: 735 -VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793
+ + + LSGGQ+QR+ IAR + ++ L D+P SA+D + + + ++++ L
Sbjct: 138 DKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKI-EDLIHKLKEDY 196
Query: 794 TVIYVTHQVE 803
T++ VTH ++
Sbjct: 197 TIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 9e-07
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 30/228 (13%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI--SLIGLHDL 1319
V+ ++ T G ++G +G GK+T+++ + + +P GQI IDG D+ I D+
Sbjct: 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDI 80
Query: 1320 RSRLSIIPQD----PVMFEG-TVRSNLDPLEESTDE---QIWEALDKCQLGDEVRKKEGK 1371
++ Q P M G V L L +E ++ EAL+ L G
Sbjct: 81 ----CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDL-------AGF 129
Query: 1372 LDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR---QH 1428
D V + S GQ+Q V L R L+ + K+L+ DE +++D +++ +R Q
Sbjct: 130 EDRYV----DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ 185
Query: 1429 FSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSF 1475
F + T L + H + SD V+++N G I + +P L +S F
Sbjct: 186 F-NITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232
|
Length = 351 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 9e-07
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 41/172 (23%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT---------LKLCG--- 681
P LK+++L V G VA+ G G+GKS+LL + SG + L
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 682 ---------TKAYVAQ----SPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEIL 728
T YV+Q P + + ++ L + + RE A A L L I
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREA--ARARARELLARLNI- 138
Query: 729 SFGDQTVIGERGINL-----SGGQKQRIQIARALYQDSDIYLFDDPFSAVDA 775
ER +L SGG++QR+ IAR D I L D+P +++DA
Sbjct: 139 --------PERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 9e-07
Identities = 60/220 (27%), Positives = 94/220 (42%), Gaps = 65/220 (29%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
+L+ IS +F G K G++G G+GKSTL+ RI + G+D G +
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLL----RI---------MAGVDKEFNG----EA 62
Query: 1322 RLS------IIPQDPVMFEG-TVRSN-----------LDPLEEST--------------D 1349
R + +PQ+P + TVR N LD E +
Sbjct: 63 RPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLA 122
Query: 1350 EQ--IWEALDKCQLGDEVRKKEGKL--------DSKVTENGENWSMGQRQLVCLGRVLLK 1399
EQ + E +D D RK E + D+ VT S G+R+ V L R+LL
Sbjct: 123 EQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVT----KLSGGERRRVALCRLLLS 178
Query: 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439
+ +L+LDE T +D + ++Q L+++ TV+ + H
Sbjct: 179 KPDMLLLDEPTNHLDAESVAWLEQHLQEYPG--TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 9e-07
Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 44/170 (25%)
Query: 649 VAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMN 708
+ + G GSGK++L + E+ G + + + + I
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII----------- 53
Query: 709 RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDD 768
+G + + SG + R+ +A A D+ + D+
Sbjct: 54 ---------------------------VGGKKASGSGELRLRLALALARKLKPDVLILDE 86
Query: 769 PFSAVDAHTGSHLFQEVLLGLL------SSKTVIYVTHQVEFLPAADLIL 812
S +DA + L L LL + TVI T+ + L A L
Sbjct: 87 ITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR 136
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 57/237 (24%), Positives = 88/237 (37%), Gaps = 54/237 (22%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L+ I+ T GE ++G +G GK+TL+ + V G I +DG +
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE--------- 66
Query: 1322 RLSIIPQDPVMFEGTVRSN--LDPLEESTDEQIWE-ALDKCQLG--------DEVRKKEG 1370
P G V N L P W D G + +
Sbjct: 67 -------GPGAERGVVFQNEGLLP---------WRNVQDNVAFGLQLAGVEKMQRLEIAH 110
Query: 1371 KLDSKVTENGEN----W--SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424
++ KV G W S GQRQ V + R L ++L+LDE ++D T +Q
Sbjct: 111 QMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL 170
Query: 1425 LRQ--HFSDCTVLTIAHRITSVI--DSDLVLLLNHGLIEEFDNPANLLENKSSSFSQ 1477
L + + VL I H I + ++LVLL P ++E +F++
Sbjct: 171 LLKLWQETGKQVLLITHDIEEAVFMATELVLLS--------PGPGRVVERLPLNFAR 219
|
Length = 255 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 47/209 (22%), Positives = 85/209 (40%), Gaps = 32/209 (15%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----------- 684
L D++ V G VA+ G G+GKS+L S + G + + G
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARL 76
Query: 685 -YVAQSPWIQSG-KIEDNILF-------GKEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
V Q P + + N+ + + R R +L L +
Sbjct: 77 GVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERA---------- 126
Query: 736 IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV-LLGLLSSKT 794
++ L+GG ++R++IARAL + L D+P +D + + + V L +
Sbjct: 127 -DDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLS 185
Query: 795 VIYVTHQVEFLPAADLILVMKDGKITQAG 823
V++ TH V+ + A D ++V+ G++ G
Sbjct: 186 VLWATHLVDEIEADDRLVVLHRGRVLADG 214
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-06
Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 29/222 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 684
+ D++L+V G V + G G+GK++L + I G SGT+ G +
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 685 YVA---QSPWIQSG-KIEDNILFGKEMNRERYNAVLDACSLKKD--------LEILSFGD 732
+A Q + G + +N+ G R + +L +K+ E+L F
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVG-AHARLGLSGLLGRPRARKEEREARERARELLEFVG 138
Query: 733 QT-VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-- 789
+ NLS GQ++R++IARAL + L D+P + ++ L E++ L
Sbjct: 139 LGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA-ELIRELRD 197
Query: 790 LSSKTVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDLIN 830
T++ + H ++ + AD I+V+ G++ G ++ N
Sbjct: 198 RGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-06
Identities = 59/229 (25%), Positives = 100/229 (43%), Gaps = 37/229 (16%)
Query: 1256 APQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI----------- 1304
++ V +S + GE IVG +GSGKS L R++E A G +
Sbjct: 26 QQKIAAVRN-LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRS 84
Query: 1305 --LIDGIDISLIGLHDLR-SRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQ- 1360
+I+ + S + +R + +++I Q+P+ ++L+P+ + EQI E++ Q
Sbjct: 85 RQVIELSEQSAAQMRHVRGADMAMIFQEPM-------TSLNPV-FTVGEQIAESIRLHQG 136
Query: 1361 LGDEVRKKEGK--LDS-KVTENGE-------NWSMGQRQLVCLGRVLLKRSKILMLDEAT 1410
E E K LD ++ E S G RQ V + L R +L+ DE T
Sbjct: 137 ASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPT 196
Query: 1411 ASVDTATDNLIQQTLR--QHFSDCTVLTIAHRITSVID-SDLVLLLNHG 1456
++D I Q ++ Q V+ I H + V + +D VL++ G
Sbjct: 197 TALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQG 245
|
Length = 623 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 739 RGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK---TV 795
R LSGG++QR+ IARAL + + L D+P +DA +FQ LLG L+
Sbjct: 142 RPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ--LLGELNRLQGTAF 199
Query: 796 IYVTHQVEFLPAADLILVMKDGKITQ 821
+ VTH ++ L M+DG++T
Sbjct: 200 LVVTHDLQLAKRMSRQLEMRDGRLTA 225
|
Length = 233 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 59/243 (24%), Positives = 104/243 (42%), Gaps = 55/243 (22%)
Query: 615 ETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 674
+ L + + N+++ +H LK IN+ + G A+ G G+GKS+L + G + S
Sbjct: 3 DYILKVEELNYNYSDGTH--ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS 60
Query: 675 GT---------------LKLCGTKAYVAQSPWIQ--SGKIEDNILFG-------KEMNRE 710
G +KL + V Q P Q S + ++ FG ++ R+
Sbjct: 61 GRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRK 120
Query: 711 RYNAVLDACSLK----KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLF 766
R + L ++ K LSF GQK+R+ IA L + + +
Sbjct: 121 RVDNALKRTGIEHLKDKPTHCLSF---------------GQKKRVAIAGVLVMEPKVLVL 165
Query: 767 DDPFSAVDAHTGSHLFQEVL-----LGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKIT 820
D+P + +D S + + ++ LGL T+I TH ++ +P D + VMK+G++
Sbjct: 166 DEPTAGLDPMGVSEIMKLLVEMQKELGL----TIIIATHDIDIVPLYCDNVFVMKEGRVI 221
Query: 821 QAG 823
G
Sbjct: 222 LQG 224
|
Length = 283 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 47/210 (22%), Positives = 84/210 (40%), Gaps = 40/210 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------KAYVAQS 689
D++ + G + + G G+GK++LL + G + +G + G ++Y
Sbjct: 18 FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQAL 77
Query: 690 PWI--QSG-----KIEDNILFGKEM----NRERYNAVLDACSLKKDLEILSFGDQTVIGE 738
++ Q G +N+ F + N L L LE L G
Sbjct: 78 LYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLA-GLEDLPVG------- 129
Query: 739 RGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKT---- 794
LS GQ++R+ +AR + +++ D+PF+A+D +L L+++
Sbjct: 130 ---QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEG-----VALLTALMAAHAAQGG 181
Query: 795 -VIYVTHQVEFLPAADLILVMKDGKITQAG 823
V+ THQ LP A + D T+A
Sbjct: 182 IVLLTTHQP--LPIASAQIRRLDLTATKAT 209
|
Length = 209 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-06
Identities = 56/232 (24%), Positives = 106/232 (45%), Gaps = 27/232 (11%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS--------- 1312
L IS TF + I+G +GSGKSTL+ +++ G I + I I
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 1313 -------LIGLHDLRSRLSIIPQDP--VMFEGTVRSNL--DPLEESTDEQIWEALDKCQL 1361
+ +LR R+S++ Q P +F+ T+ ++ P+ + + +L
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKS-----EAKKL 155
Query: 1362 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN-L 1420
K G DS + + S GQ++ V + +L + +IL+ DE TA +D ++ +
Sbjct: 156 AKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEM 215
Query: 1421 IQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471
+Q L ++ TV I H + V++ +D V++++ G I + P + ++
Sbjct: 216 MQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
|
Length = 320 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 26/158 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL---------CGTKA-- 684
++D++L V G V + G G+GK++ ++G VP+ +G + + +A
Sbjct: 19 VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARR 78
Query: 685 ---YVAQSPWI-QSGKIEDNIL----FGKEMNRERYNAVLDACSLKKDLEILSFGDQTVI 736
Y+ Q I + + DN++ +++ E+ A L ++ I D
Sbjct: 79 GIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRED--RANELMEEFHIEHLRDSM-- 134
Query: 737 GERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVD 774
G +LSGG+++R++IARAL + L D+PF+ VD
Sbjct: 135 ---GQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-06
Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 32/214 (14%)
Query: 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPA-AGQILIDGIDISLIG-LHDLRSRLSIIPQD- 1329
GE G+ G G+G++ L+Q LF G + I+G + + +R+ ++++P+D
Sbjct: 286 GEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDR 345
Query: 1330 ------PVMFEG--TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1381
P++ G S L +I A + +G +++ + K S G
Sbjct: 346 KRHGIVPILGVGKNITLSVLKSF--CFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG- 402
Query: 1382 NWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD----NLIQQTLRQHFSDCTVLTI 1437
S G +Q L ++LL ++L+LDE T VD LI Q ++ + ++ +
Sbjct: 403 RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVA---IIVV 459
Query: 1438 AHRITSVID-SDLVL----------LLNHGLIEE 1460
+ + V+ SD VL +NH L +E
Sbjct: 460 SSELAEVLGLSDRVLVIGEGKLKGDFVNHALTQE 493
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 36/215 (16%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L+GIS T GE G +G G+GK+T ++ L +++P +G ++ + GL +
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG-------EVRVAGLVPWKR 88
Query: 1322 RLSIIPQDPVMF--EGTVRSNLDPLE---------ESTDEQIWEALDKC----QLGDEVR 1366
R + + V+F + + +L ++ + + + LD+ L +
Sbjct: 89 RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-- 146
Query: 1367 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR 1426
LD+ V S+GQR + LL +IL LDE T +D I+ L+
Sbjct: 147 -----LDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLK 197
Query: 1427 QHFSD--CTVLTIAHRITSVID-SDLVLLLNHGLI 1458
++ + TVL +H + + + VL+++ G +
Sbjct: 198 EYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 49/216 (22%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---KAYVAQSPWI 692
L +++LKV G V++CG G+GKS+L+ + G P GT + +
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP--------HGTYEGEIIFEGEE-L 71
Query: 693 QSGKIED-----------------------NILFGKEMNRE---RYNAV-LDACSLKKDL 725
Q+ I D NI G E+ Y+A+ L A L L
Sbjct: 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQL 131
Query: 726 EILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV 785
++ D NL GQ+Q ++IA+AL + + + + D+P +++ + L
Sbjct: 132 KL----DINP-ATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLD-- 184
Query: 786 LLGLLSSKTV--IYVTHQVEFLPA-ADLILVMKDGK 818
++ L + + IY++H++ + A +D I V++DG+
Sbjct: 185 IIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 3e-06
Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 75/249 (30%)
Query: 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676
AL++ + +D + P K++NL + G R+A+ G G GK++LL ++GE+ SGT
Sbjct: 319 ALEVENLTKGFD---NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGT 375
Query: 677 LKLCGTKAYVAQSPWIQSGKI--------EDNILFGKEMNRERYNAVLDACSL---KKDL 725
+K W ++ I D F ++ + D S + D
Sbjct: 376 VK------------WSENANIGYYAQDHAYD---FENDLT------LFDWMSQWRQEGD- 413
Query: 726 EILSFGDQTVIGERGI----------------NLSGGQKQRIQIARALYQDSDIYLFDDP 769
+Q V RG LSGG+K R+ + + Q ++ + D+P
Sbjct: 414 -----DEQAV---RGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465
Query: 770 FSAVDAHTGSHLFQEVLLGL-----LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQ-A 822
+H+ E + L T+I+V+H EF+ + A I+ + + +
Sbjct: 466 --------TNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFS 517
Query: 823 GKYNDLINS 831
G Y + + S
Sbjct: 518 GTYEEYLRS 526
|
Length = 530 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 46/210 (21%), Positives = 79/210 (37%), Gaps = 54/210 (25%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP---KISGTLKLCG--------- 681
P LKD + V G V V G GSG S+LL + + G + G
Sbjct: 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80
Query: 682 ---TKAYVAQSPW-IQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIG 737
YV++ + + + + F A K G++ V
Sbjct: 81 YPGEIIYVSEEDVHFPTLTVRETLDF--------------ALRCK--------GNEFV-- 116
Query: 738 ERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIY 797
RGI SGG+++R+ IA AL + + +D+ +D+ T + + + KT +
Sbjct: 117 -RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTF 173
Query: 798 VTHQVEFLPAA-------DLILVMKDGKIT 820
V+ A+ D +LV+ +G+
Sbjct: 174 VS----LYQASDEIYDLFDKVLVLYEGRQI 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-06
Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 21/203 (10%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L +I+ ++ G VA+ G GSGKS+L+ + SGT+ + G
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 684 -----AYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFG-DQTVIG 737
+ V Q P Q E+ +L E + + D K + G + +I
Sbjct: 83 LRKKVSLVFQFPEAQL--FENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS 140
Query: 738 ERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIY 797
+ LSGGQ +R+ IA + + +I D+P + +D + Q + TVI
Sbjct: 141 KSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVIL 200
Query: 798 VTHQVEFLPA-ADLILVMKDGKI 819
VTH ++ + AD +LV++ GK+
Sbjct: 201 VTHNMDDVAEYADDVLVLEHGKL 223
|
Length = 287 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 4e-06
Identities = 55/266 (20%), Positives = 107/266 (40%), Gaps = 67/266 (25%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGT----LKLCGTKAYVA-- 687
LK+I+ + G + + G G+GKS L+ + G + SG + LC YV
Sbjct: 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERP 75
Query: 688 -----QSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILS------FGDQTVI 736
P + + F ++ R ++K + I+ +GD TV+
Sbjct: 76 SKVGEPCPVCGGTLEPEEVDFWNLSDKLRRR-------IRKRIAIMLQRTFALYGDDTVL 128
Query: 737 -------------GERGI---------------------NLSGGQKQRIQIARALYQDSD 762
G+ + +LSGG+KQR+ +AR L ++
Sbjct: 129 DNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPF 188
Query: 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK--TVIYVTHQVEFLP-AADLILVMKDGKI 819
++L D+P +D T + L L + + +++ +H E + +D + +++G+I
Sbjct: 189 LFLADEPTGTLDPQT-AKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEI 247
Query: 820 TQAGKYNDLINSGTDFMELVGAHEQA 845
+ G ++++ FME V E+
Sbjct: 248 KEEGTPDEVVAV---FMEGVSEVEKE 270
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 4e-06
Identities = 54/225 (24%), Positives = 102/225 (45%), Gaps = 21/225 (9%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-TKAYVAQSPWIQS 694
L DI+L+V G A+ G GSGKS+LL + G + G + + + ++ I+
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 695 GKIEDNILFGKEMNRERYNAVLDACSL--------KKDLEILSFGDQTVIG-------ER 739
+ + ++F ++ VL + K+ E ++ ++G +
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKS 141
Query: 740 GINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVT 799
LSGGQ +R+ IA L + ++ + D+P + +D + Q S +TV+ VT
Sbjct: 142 PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201
Query: 800 HQVEFLPA-ADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHE 843
H ++ + AD + +++ G I G +D+ DF++ AHE
Sbjct: 202 HLMDDVADYADYVYLLEKGHIISCGTPSDVFQE-VDFLK---AHE 242
|
Length = 288 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 43/201 (21%), Positives = 86/201 (42%), Gaps = 36/201 (17%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQ---GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA 1301
+I + ++ + ++P L+ +S GE I+G+TGSGK+T I+ L ++ P
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 1302 GQI--------------LIDGIDISLI----------GLHDLRSRLSIIPQ--DPVMFEG 1335
G I + + L+ + ++R R+ ++ Q + +FE
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 1336 TVRSNL--DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1393
T+ ++ P+ ++ EA + + + G +S + + S GQ++ V L
Sbjct: 122 TIEKDIIFGPVSMGVSKE--EAK---KRAAKYIELVGLDESYLQRSPFELSGGQKRRVAL 176
Query: 1394 GRVLLKRSKILMLDEATASVD 1414
+L L+ DE TA +D
Sbjct: 177 AGILAMEPDFLVFDEPTAGLD 197
|
Length = 305 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 42/231 (18%)
Query: 1264 QGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP----AAGQILIDGIDISLIGLHDL 1319
Q ++ + GE +VG +GSGKS + ++ P +G+IL+DG + + +
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS---I 59
Query: 1320 RSR-LSIIPQDPV------------MFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVR 1366
R R ++ I Q+P E T+RS +++ I EAL+ L
Sbjct: 60 RGRHIATIMQNPRTAFNPLFTMGNHAIE-TLRSLGKLSKQARA-LILEALEAVGL----P 113
Query: 1367 KKEGKLDSKVTE-NGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTL 1425
E L + +G M QR ++ L LL L+ DE T +D + + L
Sbjct: 114 DPEEVLKKYPFQLSG---GMLQRVMIALA--LLLEPPFLIADEPTTDLDVVNQARVLKLL 168
Query: 1426 R--QHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEE-------FDNPAN 1466
R + +L I H + V +D V +++ G I E F NP +
Sbjct: 169 RELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKH 219
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 32/209 (15%)
Query: 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI--VEPAAGQILIDGIDISLIGLHDL-RSR 1322
+S GE +VG G+GKSTL L R+ + P +G I G + +L R R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTL---LARMAGLLPGSGSIQFAGQPLEAWSAAELARHR 71
Query: 1323 LSIIPQDPVMFEGTVRSNLD-PLEESTDEQIWEAL--DKCQLGDEVRKKEGKLDSKVTEN 1379
+ Q F V L + T + + + + LD K+ +
Sbjct: 72 AYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEA--------LGLDDKLGRS 123
Query: 1380 GENWSMGQRQLVCLGRVLLK-------RSKILMLDEATASVDTATDNLIQQTLRQHFSDC 1432
S G+ Q V L V+L+ ++L+LDE S+D A + + L + C
Sbjct: 124 VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSEL---C 180
Query: 1433 ----TVLTIAHRITSVID-SDLVLLLNHG 1456
V+ +H + + +D V LL G
Sbjct: 181 QQGIAVVMSSHDLNHTLRHADRVWLLKQG 209
|
Length = 248 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 6e-06
Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 22/174 (12%)
Query: 696 KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGD-QTVIGERGINLSGGQKQRIQIA 754
+I ++I + +RE A+++A K+ L+ + + QT++ LSGG +QR+ IA
Sbjct: 126 QIAESIRLHQGASREE--AMVEA---KRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIA 180
Query: 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS---SKTVIYVTHQVEFLP-AADL 810
AL + + D+P +A+D + + Q L+ +L S VI++TH + + AD
Sbjct: 181 MALSCRPAVLIADEPTTALDVTIQAQILQ--LIKVLQKEMSMGVIFITHDMGVVAEIADR 238
Query: 811 ILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQALLA----LGSIEGRPASER 860
+LVM G+ + G + ++ + +ALLA LG+++G R
Sbjct: 239 VLVMYQGEAVETGSVEQIFHAPQH------PYTRALLAAVPQLGAMKGLDYPRR 286
|
Length = 623 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 6e-06
Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 34/210 (16%)
Query: 646 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKI-EDNILFG 704
G +AV G GSGKS+LL+ + G + + T + + ++G + +D+IL+
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYP 153
Query: 705 KEMNRERYNAVLDACSLKKDLEILSFGDQT-----VIGERGIN--------------LSG 745
RE L CSL + + L+ ++ VI E G+ +SG
Sbjct: 154 HLTVRE----TLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISG 209
Query: 746 GQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFL 805
G+++R+ IA + + + + D+P S +DA L + KT++ HQ
Sbjct: 210 GERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQ---- 265
Query: 806 PAA------DLILVMKDGKITQAGKYNDLI 829
P++ D +LV+ +G+ GK +D +
Sbjct: 266 PSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295
|
Length = 659 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 7e-06
Identities = 50/221 (22%), Positives = 85/221 (38%), Gaps = 54/221 (24%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------AYVA- 687
L D++ V G + G G+GK++L+ I G+ G + G +A
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 688 -------QSPWI-QSGKIEDN-------------ILFGKEMNRERYNAVLDACSLKKDLE 726
Q P + ++ + +N LF + + E + + L
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFAR-LRAEERRRIDEL------LA 133
Query: 727 ILSFGDQTVIGERGI---NLSGGQKQRIQIARALYQDSDIYLFDDPFS----AVDAHTGS 779
+ GD ER LS GQKQ ++I L QD + L D+P + A T
Sbjct: 134 TIGLGD-----ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA- 187
Query: 780 HLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKI 819
E+L L +++ V H + F+ AD + V+ +G +
Sbjct: 188 ----ELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSV 224
|
Length = 249 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 7e-06
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 741 INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-LGLLSSKTVIYVT 799
I+LSGG+ QR+ IA AL +++ YLFD+P + +D + + + L KT + V
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 800 HQVEFLP-AADLILVM--KDGKITQAGKYNDLINSGTDFMELVG 840
H + L +D I V + G A + F+
Sbjct: 130 HDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTREGINRFLRGYL 173
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 8e-06
Identities = 75/308 (24%), Positives = 132/308 (42%), Gaps = 44/308 (14%)
Query: 530 VFWGAPTF----VSVA-TFGTCIL-LNVPLESGKMLSAIATFRLLQVPIYNLPDVISMII 583
VF+ A + +VA T+ +L L PL LSA+ P ++S
Sbjct: 250 VFYMANSLGWADTNVAATYSLTLLFLRTPL-----LSAVGAL----------PTLLS--- 291
Query: 584 QTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKV 643
+V+ ++ L + + + + L++ + F++ + ++ INL +
Sbjct: 292 -AQVAFNKLNKL-ALAPYKAEF-PRPQAFPDWQTLELRNVTFAYQDNGF--SVGPINLTI 346
Query: 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ-----SGKIE 698
G + + G GSGKS+L + G SG + L G V S
Sbjct: 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP--VTAEQPEDYRKLFSAVFT 404
Query: 699 DNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQ-TVIGER--GINLSGGQKQRIQIAR 755
D LF + + E A + ++K LE L + + R + LS GQK+R+ +
Sbjct: 405 DFHLFDQLLGPEGKPA--NPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLL 462
Query: 756 ALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL--SSKTVIYVTHQVEFLPAADLILV 813
AL ++ DI L D+ + D H F +VLL LL KT+ ++H + AD +L
Sbjct: 463 ALAEERDILLLDEWAADQDPHF-RREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLE 521
Query: 814 MKDGKITQ 821
M++G++++
Sbjct: 522 MRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 8e-06
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 32/194 (16%)
Query: 1260 PLV-LQGISCTFPG-------------GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
P + + GI +F GE ++G G+GKSTL++ L I EP G I
Sbjct: 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTIT 63
Query: 1306 IDGIDISLIGLHDLRSRL--SIIPQD-PVMFEGTVRSNL----DPLEESTDEQIWEALDK 1358
I+ I+ + + H L ++L II Q+ V+ E TV NL ++ I + +
Sbjct: 64 INNINYNKLD-HKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM 122
Query: 1359 CQLGDEVRKKEG---KLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASV-D 1414
+ + G LD KV N S+ +Q++ + + L+ +K++++DE T+S+ +
Sbjct: 123 RVRAAMMLLRVGLKVDLDEKV----ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTN 178
Query: 1415 TATDNL--IQQTLR 1426
D L I LR
Sbjct: 179 KEVDYLFLIMNQLR 192
|
Length = 510 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 41/172 (23%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE---------VPKISGTLKLCG--- 681
P L++++L V G V + G GSGKS+LL + V + L
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84
Query: 682 ---------TKAYVAQ----SPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEIL 728
T YV+Q P + + + L + + RE A + DL L
Sbjct: 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPRE------VARAKAADL--L 136
Query: 729 SFGDQTVIGERGINL-----SGGQKQRIQIARALYQDSDIYLFDDPFSAVDA 775
+ + + ER +L SGG++QR+ IAR D I L D+P +++DA
Sbjct: 137 T---RLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDA 185
|
Length = 235 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 8e-06
Identities = 62/256 (24%), Positives = 104/256 (40%), Gaps = 49/256 (19%)
Query: 1252 QVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKS----TLIQTLFRIVEPAAGQILID 1307
+ PLV G+S T G +VG +GSGKS + L V AG++L+D
Sbjct: 9 NIALQAAQPLV-HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLD 67
Query: 1308 GIDISLIGLHDLRSRL-SIIPQDPVMFEGTVRSNLDPLE---------------ESTDEQ 1351
G ++ LR R + I Q+P RS +PL + D
Sbjct: 68 GKPVA---PCALRGRKIATIMQNP-------RSAFNPLHTMHTHARETCLALGKPADDAT 117
Query: 1352 IWEALDKCQLGDEVRKKEGKLDSKVTE-NGENWSMGQRQLVCLGRVLLKRSKILMLDEAT 1410
+ AL+ L + R L E +G M QR ++ L LL + ++ DE T
Sbjct: 118 LTAALEAVGLENAAR----VLKLYPFEMSG---GMLQRMMIALA--LLCEAPFIIADEPT 168
Query: 1411 ASVDTATD----NLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPA 1465
+D +L++ +++ +L + H + V +D V +++HG I E +
Sbjct: 169 TDLDVVAQARILDLLESIVQKR--ALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVE 226
Query: 1466 NLLENKSSSFSQ-LVA 1480
L + ++ LV+
Sbjct: 227 TLFNAPKHAVTRSLVS 242
|
Length = 254 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 9e-06
Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 40/195 (20%)
Query: 1246 IDLLDLQVRYAPQMPLV--LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1303
+D+ DL+V ++ V + ++ + GE GIVG +GSGKS QT F ++ A
Sbjct: 13 LDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKS---QTAFALMGLLAAN 69
Query: 1304 ILIDG---------IDISLIGLHDLRS-RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIW 1353
I G +++ L+ LR+ ++S+I QDP+ ++L+P EQ+
Sbjct: 70 GRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM-------TSLNPYMR-VGEQLM 121
Query: 1354 EALDKCQLGDEVRKKEGKLDS-------KVTENGENWSM-------GQRQLVCLGRVLLK 1399
E L L + K E +S K+ E + M G RQ V + LL
Sbjct: 122 EVL---MLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLC 178
Query: 1400 RSKILMLDEATASVD 1414
R K+L+ DE T ++D
Sbjct: 179 RPKLLIADEPTTALD 193
|
Length = 330 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-06
Identities = 50/212 (23%), Positives = 84/212 (39%), Gaps = 25/212 (11%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI--- 692
+ +I+ +V G + G G+GK++ ILG + G + G I
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYL 77
Query: 693 -------QSGKIEDNILFG---KEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGIN 742
+ED + + K M + L A + LEI I E
Sbjct: 78 PEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQA--WLERLEI-VGKKTKKIKE---- 130
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQ- 801
LS G +Q+IQ A+ + ++ + D+PFS +D L + T+I+ +H+
Sbjct: 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM 190
Query: 802 --VEFLPAADLILVMKDGKITQAGKYNDLINS 831
VE L D +L++K G+ G D+ S
Sbjct: 191 EHVEEL--CDRLLMLKKGQTVLYGTVEDIRRS 220
|
Length = 300 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 9e-06
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 21/156 (13%)
Query: 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI-LIDGIDISLIGLHDL 1319
++L I G + G++GR G+GKSTLI+ L + P +G+I L GI + H
Sbjct: 326 IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQH-- 383
Query: 1320 RSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQL-GDEVRKKEGKLDSKVTE 1378
+L + D + R L P E ++++ + L GD KVTE
Sbjct: 384 --QLEFLRADESPLQHLAR--LAPQE--LEQKLRDYLGGFGFQGD-----------KVTE 426
Query: 1379 NGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
+S G++ + L ++ +R +L+LDE T +D
Sbjct: 427 ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
Length = 638 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI---SLIGLH 1317
+ IS T P G+ T I+G +G GK+TL++ + + P G+IL DG +I S L+
Sbjct: 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80
Query: 1318 DLRSRLSIIPQDPVMF-EGTVRSNLD-PLEEST 1348
+R R+S++ Q +F + V N+ PL E T
Sbjct: 81 TVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT 113
|
Length = 269 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 52/215 (24%)
Query: 1261 LVLQGISCTFPG-------------GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID 1307
L L+GI FPG G +VG G+GKST+++ L I AG IL
Sbjct: 5 LQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYL 64
Query: 1308 GIDISLIGLHDLR-SRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVR 1366
G +++ G + + + II Q+ NL P + + E I+ LG E
Sbjct: 65 GKEVTFNGPKSSQEAGIGIIHQE---------LNLIP-QLTIAENIF-------LGREFV 107
Query: 1367 KKEGKLD-------------------SKVTENGENWSMGQRQLVCLGRVLLKRSKILMLD 1407
+ G++D S GE S+G++Q+V + +VL SK++++D
Sbjct: 108 NRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGE-LSIGEQQMVEIAKVLSFESKVIIMD 166
Query: 1408 EAT-ASVDTATDNLIQQTLRQHFSDCTVLTIAHRI 1441
E T A DT T++L + ++ I+HR+
Sbjct: 167 EPTDALTDTETESLFRVIRELKSQGRGIVYISHRL 201
|
Length = 501 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-05
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 22/135 (16%)
Query: 685 YVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGIN-L 743
YV P + GK+ + L K R +++ V++ L+ L+ R ++ L
Sbjct: 169 YVDLIPKVVKGKVGE--LLKKVDERGKFDEVVERLGLENVLD------------RDVSEL 214
Query: 744 SGGQKQRIQIARALYQDSDIYLFDDPFSAVDAH---TGSHLFQEVLLGLLSSKTVIYVTH 800
SGG+ QR+ IA AL +D+D+Y FD+P S +D + + +E+ K VI V H
Sbjct: 215 SGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIREL---AEDGKYVIVVEH 271
Query: 801 QVEFLPA-ADLILVM 814
+ L +D + ++
Sbjct: 272 DLAVLDYLSDFVHIL 286
|
Length = 591 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 7/149 (4%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS-LIGLHDLR 1320
L +S GE ++G G+GK+TL+ TL +G+I+ DG DI+ +R
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 1321 SRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1379
++I+P+ +F TV NL + ++ + V + +L + +
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQ-----ERIKWVYELFPRLHERRIQR 134
Query: 1380 GENWSMGQRQLVCLGRVLLKRSKILMLDE 1408
S G++Q++ +GR L+ + ++L+LDE
Sbjct: 135 AGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
|
Length = 237 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 64/243 (26%), Positives = 101/243 (41%), Gaps = 71/243 (29%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA------- 684
+N LK+I++ + G+ V G GSGKSSL++ L P ++ L L +
Sbjct: 9 NN--LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTL--YPALARRLHLKKEQPGNHDRIE 64
Query: 685 ---------YVAQSPWIQS--------GKIEDNI--LF-----GKEMNRE----RYNA-- 714
+ QSP ++ + D I LF GK NRE RY
Sbjct: 65 GLEHIDKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKS 124
Query: 715 ---VLD------------ACSLKKDLEILSFGDQTV------IGERGINLSGGQKQRIQI 753
VLD + + L+ L V +G+ LSGG+ QRI++
Sbjct: 125 IADVLDMTVEEALEFFENIPKIARKLQTL----CDVGLGYIKLGQPATTLSGGEAQRIKL 180
Query: 754 ARALYQDSD---IYLFDDPFSAVDAHTGSHLFQEVLLGLLSS-KTVIYVTHQVEFLPAAD 809
A+ L + S +Y+ D+P + + H L EVL L+ TV+ + H ++ + AD
Sbjct: 181 AKELSKRSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVDKGNTVVVIEHNLDVIKCAD 239
Query: 810 LIL 812
I+
Sbjct: 240 WII 242
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 2e-05
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 709 RERYNAVLDA--CSLKKDLEILSFGD------QTVIGERGINLSGGQKQRIQIARALYQD 760
R+ Y + D+ + K + I F +T++G LSGGQKQRI IARA+ ++
Sbjct: 538 RKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRN 597
Query: 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGLL--SSKTVIYVTHQVEFLPAADLILVMKD 816
I + D+ S++D + +L Q+ + L ++ I + H++ + A+ I V+ +
Sbjct: 598 PKILILDEATSSLD-NKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 53/235 (22%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
V+ + T GE ++G +G GK+T+++ + P +G+I++DG DI+ +
Sbjct: 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT--HVPAENR 86
Query: 1322 RLSIIPQDPVMF-EGTVRSNLD--------PLEESTDEQIWEALDKCQLGDEVRKKEGKL 1372
++ + Q +F TV N+ P E ++ EAL QL + ++K +L
Sbjct: 87 HVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAE-ITPRVMEALRMVQLEEFAQRKPHQL 145
Query: 1373 DSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDC 1432
S GQ+Q V + R ++ + K+L+LDE+ +++D +Q L+
Sbjct: 146 -----------SGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKA----- 189
Query: 1433 TVLTIAHR---ITSVI---D-------SDLVLLLNHGLIEE-------FDNPANL 1467
R IT V D SD ++++ G IE+ ++ P NL
Sbjct: 190 -----LQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNL 239
|
Length = 375 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK---TVIYVT 799
LSGGQ+QR+ IA AL + D+ + D+P +A+D + + LL L ++ ++++T
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD--LLKELQAELGMAILFIT 215
Query: 800 HQVEFLPA-ADLILVMKDGKITQAG 823
H + + AD + VM+ G+I + G
Sbjct: 216 HDLGIVRKFADRVYVMQHGEIVETG 240
|
Length = 534 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 23/169 (13%)
Query: 646 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------AYVAQSPWIQ 693
G + V G GSGK++LL + G P ++G + L G Y+ +P I+
Sbjct: 26 GEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIK 85
Query: 694 SG-KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752
+ + +N+ F + + V +A + + + F D+ V LS GQ++R+
Sbjct: 86 TTLSVLENLRFWHADHSD--EQVEEALA---RVGLNGFEDRPVA-----QLSAGQQRRVA 135
Query: 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQ 801
+AR L +++ D+P +A+D + + + V+ THQ
Sbjct: 136 LARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 2e-05
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI- 1304
I+L +L Y + L+L+ IS T G++ G+VGR G+GKSTL++ + +EP G +
Sbjct: 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 1305 LIDGIDIS 1312
+ I
Sbjct: 59 WGSTVKIG 66
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (114), Expect = 2e-05
Identities = 60/247 (24%), Positives = 99/247 (40%), Gaps = 51/247 (20%)
Query: 628 DISSHNPTLKDINLKV-FHGMRV--------------AVCGTVGSGKSSLLSCILGEVPK 672
D+ + P + +NL + F G V ++ G GSGK++ L + K
Sbjct: 14 DVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDK 73
Query: 673 ISG-------------------TLKLCGTKAYVAQSPWIQSGKIEDNILFG----KEMNR 709
+SG L+ + Q P I DN+L G K + R
Sbjct: 74 VSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR 133
Query: 710 ERYNAVLDACSLKKDLEILSFGDQTVIGER----GINLSGGQKQRIQIARALYQDSDIYL 765
+ + V A + G + +R LSGGQ+Q + +AR L + ++ L
Sbjct: 134 KEFRGVAQA-------RLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLL 186
Query: 766 FDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQV-EFLPAADLILVMKDGKITQAGK 824
D+P SA+D T + +E + L TVI VTH + + +D + DG++ + G
Sbjct: 187 LDEPTSALDPTTTEKI-EEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGP 245
Query: 825 YNDLINS 831
L +S
Sbjct: 246 TEQLFSS 252
|
Length = 276 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-05
Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 45/262 (17%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI-----VEPA 1300
I+ L + R + V+ +S GE +VG +GSGKS ++ R+ V
Sbjct: 8 IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYP 67
Query: 1301 AGQILIDGIDISLIGLH----DLR----SRLSIIPQDPVMFEGTVRSNLDPLEESTDEQI 1352
+G I G + LH LR +++++I Q+P++ +L+PL + ++Q+
Sbjct: 68 SGDIRFHGESL----LHASEQTLRGVRGNKIAMIFQEPMV-------SLNPL-HTLEKQL 115
Query: 1353 WEALDKCQLGDEVRKKEGK------LD--------SKVTENGENWSMGQRQLVCLGRVLL 1398
+E L L +R++ + LD ++T+ S G+RQ V + LL
Sbjct: 116 YEVL---SLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALL 172
Query: 1399 KRSKILMLDEATASVDTATDNLIQQTLR--QHFSDCTVLTIAHRITSVID-SDLVLLLNH 1455
R ++L+ DE T ++D + I Q LR Q + +L I H ++ V +D V ++ +
Sbjct: 173 TRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQN 232
Query: 1456 GLIEEFDNPANLLENKSSSFSQ 1477
G E + A L + ++Q
Sbjct: 233 GRCVEQNRAATLFSAPTHPYTQ 254
|
Length = 529 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 59/215 (27%), Positives = 91/215 (42%), Gaps = 34/215 (15%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG----EVPKISGTLKLCGT--------- 682
LK +NL V G A+ G GSGKS+L I+G EV G + G
Sbjct: 20 LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV--TEGEILFDGEDILELSPDE 77
Query: 683 KA----YVA-QSPW-IQSGKIEDNILFGKEMNRERYNAVLDACS---LKKDLEILSFGDQ 733
+A ++A Q P I D MN R + LK+ E+L ++
Sbjct: 78 RARAGIFLAFQYPVEIPGVTNSD--FLRAAMNARRGARGILPEFIKELKEKAELLGLDEE 135
Query: 734 TVIGERGIN--LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS 791
ER +N SGG+K+R +I + L + + + D+P S +D + E + L
Sbjct: 136 --FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALK-IVAEGINALRE 192
Query: 792 SKT-VIYVTHQVEFLPA--ADLILVMKDGKITQAG 823
V+ +TH L D + V+ DG+I ++G
Sbjct: 193 EGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-05
Identities = 50/237 (21%), Positives = 103/237 (43%), Gaps = 30/237 (12%)
Query: 1218 FQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRY------APQMPLVLQGISCTFP 1271
F+ + E R ++ P G ++ D +++ P ++++ +S P
Sbjct: 418 FKRPRVEEIES-GREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVP 476
Query: 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPV 1331
G I G G GKS+L + L + G++ + +L +PQ P
Sbjct: 477 SGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPY 525
Query: 1332 MFEGTVRSNL---DPLEES-----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1383
M GT+R + D E+ +D+ + + LD QL + ++EG + V + +
Sbjct: 526 MTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHIL-EREGGWSA-VQDWMDVL 583
Query: 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHR 1440
S G++Q + + R+ + + +LDE T++V + + + R+ T+ +++HR
Sbjct: 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 57/219 (26%), Positives = 91/219 (41%), Gaps = 32/219 (14%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTL-----FRIVEPAAGQILIDGIDISLIGL 1316
+L+G++ T GE I+G GSGKSTL +T+ + + G IL G D+ +
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTS---GTILFKGQDLLEL-E 70
Query: 1317 HDLRSRLSII--PQDPVMFEGTVRSNLDPLEES----TDEQIWEALDKCQLGDEVRKKEG 1370
D R+R + Q P G SNL+ L + + E LD ++ K
Sbjct: 71 PDERARAGLFLAFQYPEEIPGV--SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLA 128
Query: 1371 KLD-----SKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT----ATDNLI 1421
L + N E +S G+++ + ++ L K+ +LDE + +D I
Sbjct: 129 LLGMDEEFLNRSVN-EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGI 187
Query: 1422 QQTLRQHFSDCTVLTIAH--RITSVIDSDLVLLLNHGLI 1458
+ S L I H R+ + I D V +L G I
Sbjct: 188 NRLREPDRS---FLIITHYQRLLNYIKPDYVHVLLDGRI 223
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 32/184 (17%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG--IDISLI----G 1315
L I+ P GE ++G +G+GKS+L++ L + P +G + I G D S
Sbjct: 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 1316 LHDLRSRLSIIPQD----PVMFEGTVRSNL--DPL------EESTDEQIWEALDKCQLGD 1363
+ DLR + ++ Q P + TV+ NL P ++ + + L + +L
Sbjct: 77 IRDLRRNVGMVFQQYNLWPHL---TVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP 133
Query: 1364 EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQ 1423
+ L S GQ+Q V + R L+ ++L+ DE TA++D I
Sbjct: 134 YADRYPLHL-----------SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
Query: 1424 TLRQ 1427
+++
Sbjct: 183 IIKE 186
|
Length = 242 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 50/201 (24%), Positives = 92/201 (45%), Gaps = 17/201 (8%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
+ IS P GE G++G G+GK+T + + ++EP G+I +G +S +++
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKN 72
Query: 1322 RLSIIPQD----PVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVT 1377
R+ +P++ P M TV L L E E K Q E + GK K+
Sbjct: 73 RIGYLPEERGLYPKM---TVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKI- 128
Query: 1378 ENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ-HFSDCTVLT 1436
+ S G +Q + ++ ++L+LDE + +D L++ + + T++
Sbjct: 129 ---KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIF 185
Query: 1437 IAHRITSVID-SDLVLLLNHG 1456
+HR+ V + D +L+L G
Sbjct: 186 SSHRMEHVEELCDRLLMLKKG 206
|
Length = 300 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-05
Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS--KTVIYVTH 800
LS GQ+Q ++IA+AL +++ + FD+P S++ A LF+ ++ L + + ++YV+H
Sbjct: 141 LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR--VIRELRAEGRVILYVSH 198
Query: 801 QVEFLPA-ADLILVMKDGK 818
++E + A D I V KDG+
Sbjct: 199 RMEEIFALCDAITVFKDGR 217
|
Length = 501 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 36/230 (15%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 683
L D+NL + G A G GSGKS+++ + G G++++ T
Sbjct: 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80
Query: 684 -------AYVAQSPWIQSGKIEDNIL----FGKE---MNRERYNAVLDACSLKKDLEILS 729
V Q P +S E+ +L FG + +++E +A +L ++ L
Sbjct: 81 KQIRKKVGLVFQFP--ESQLFEETVLKDVAFGPQNFGVSQE------EAEALAREKLALV 132
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789
+++ + LSGGQ +R+ IA L + I + D+P + +D G + L
Sbjct: 133 GISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP-KGRKELMTLFKKL 191
Query: 790 -LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSGTDFME 837
S T++ VTH ++ + AD + V++ GK+ +GK D+ DF+E
Sbjct: 192 HQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD-VDFLE 240
|
Length = 280 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 15/91 (16%)
Query: 685 YVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGI-NL 743
YV P GK+ + L K+ R + + ++D L+ L+ R I L
Sbjct: 95 YVDLIPKAVKGKVGE--LLKKKDERGKLDELVDQLELRHVLD------------RNIDQL 140
Query: 744 SGGQKQRIQIARALYQDSDIYLFDDPFSAVD 774
SGG+ QR+ IA AL +D+D Y FD+P S +D
Sbjct: 141 SGGELQRVAIAAALARDADFYFFDEPSSYLD 171
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-05
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 744 SGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVE 803
SGG + RI +ARAL+ + D+ L D+P + +D H + L+ E L L KT I V+H E
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLH--AVLWLETYL-LKWPKTFIVVSHARE 402
Query: 804 FLPA--ADLILVMKDGKITQAGKYN 826
FL D++ + +T G Y+
Sbjct: 403 FLNTVVTDILHLHGQKLVTYKGDYD 427
|
Length = 718 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 46/237 (19%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309
L +R+ L + ++ E ++G G+GK+T+ L +P G IL+ G
Sbjct: 10 GLMMRFGGL--LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQ 67
Query: 1310 DISLIGLHDLRSRLSIIP--QDPVMF-EGTVRSNL-------------------DPLEES 1347
I + H + +R+ ++ Q +F E TV NL +
Sbjct: 68 HIEGLPGHQI-ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRA 126
Query: 1348 TDEQIWEA---LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKIL 1404
E + A L++ L + ++ G L + GQ++ + + R ++ + +IL
Sbjct: 127 ESEALDRAATWLERVGLLEHANRQAGNL-----------AYGQQRRLEIARCMVTQPEIL 175
Query: 1405 MLDEATASVDTAT----DNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHG 1456
MLDE A ++ D LI + LR + TVL I H + V+ SD + ++N G
Sbjct: 176 MLDEPAAGLNPKETKELDELIAE-LRNEH-NVTVLLIEHDMKLVMGISDRIYVVNQG 230
|
Length = 255 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 5e-05
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 744 SGGQKQRIQIARALYQDSDIYLFDDPFSAVD 774
SGGQ+QRI IARAL D D+ + D+P SA+D
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 5e-05
Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 15/207 (7%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
L +++ + G V G G+GKS+ + I G +P SG++++CG V Q+P
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGED--VLQNPKEVQR 75
Query: 696 KI----EDNILFGKEMNRE--RYNAVL---DACSLKKDL-EILSFGDQTVIGERGIN-LS 744
I E N L+ RE ++ A + LK+ + E++ + I LS
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLS 135
Query: 745 GGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEF 804
G +QR+ +A+AL D + + D+P + +D + + + V+ + KT+I TH ++
Sbjct: 136 KGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI-RNVIKNIGKDKTIILSTHIMQE 194
Query: 805 LPA-ADLILVMKDGKITQAGKYNDLIN 830
+ A D ++++ GKI K ++L
Sbjct: 195 VEAICDRVIIINKGKIVADKKLDELSA 221
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 43/213 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L + L V G +A+ G GSGKS+LL+ + G SG + L G
Sbjct: 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85
Query: 684 -----AYVAQS-PWIQSGKIEDNI-----LFGKEMNRERYNAVLDACSLKKDLEILSFGD 732
+V QS I + +N+ L G+ + R A +L +
Sbjct: 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK----------ALL---E 132
Query: 733 QTVIGER----GINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLG 788
Q +G+R LSGG++QR+ +ARA D+ D+P +D TG + ++L
Sbjct: 133 QLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKI-ADLLFS 191
Query: 789 LLS--SKTVIYVTHQVEFLPAADLILVMKDGKI 819
L T+I VTH ++ D L + +G++
Sbjct: 192 LNREHGTTLILVTHDLQLAARCDRRLRLVNGQL 224
|
Length = 228 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 5e-05
Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 16/191 (8%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
L+++NL++ G VAV G G+GK++LL ILG K G K V
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ-KGRGEEKYRPDSGKVEVPKNTV 455
Query: 694 SGKI--EDNILFGKEMNRERYNAVLDACSLKKDLEILS---FGDQTVIGERGINLSGGQK 748
S I E FG+ E + L +EIL+ D + + LS GQK
Sbjct: 456 SALIPGEYEPEFGEVTILEHLRSKTG--DLNAAVEILNRAGLSDAVLYRRKFSELSTGQK 513
Query: 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK---TVIYVTHQVEFL 805
+R ++A+ L + ++ L D+ + +D T + ++ + L+ + T+I VTH+ E
Sbjct: 514 ERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARK--ISELAREAGITLIVVTHRPEVG 571
Query: 806 PAAD---LILV 813
A LILV
Sbjct: 572 NALRPDTLILV 582
|
Length = 593 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-05
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309
L Y P+ + +S GE GIVG +GSGK+TL+ L + P AG++
Sbjct: 11 GLTKLYGPR--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMR 68
Query: 1310 DISLIGLHDL---------RSRLSIIPQDP 1330
D L L+ L R+ + Q P
Sbjct: 69 DGQLRDLYALSEAERRRLLRTEWGFVHQHP 98
|
Length = 258 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 6e-05
Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 66/200 (33%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---AYVAQSPWI 692
+KD + +V G ++A+ G G GK++LL +LG++ SG + CGTK AY Q
Sbjct: 335 VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH-CGTKLEVAYFDQ---- 389
Query: 693 QSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGIN---------- 742
+ A LD K ++ L+ G Q V+ +N
Sbjct: 390 -------------------HRAELD--PEKTVMDNLAEGKQEVM----VNGRPRHVLGYL 424
Query: 743 ----------------LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786
LSGG++ R+ +AR + S++ + D+P + +D T E+L
Sbjct: 425 QDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET-----LELL 479
Query: 787 LGLLSS--KTVIYVTHQVEF 804
LL S TV+ V+H +F
Sbjct: 480 EELLDSYQGTVLLVSHDRQF 499
|
Length = 635 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 743 LSGGQKQRIQIARAL----YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYV 798
LSGG+K+ +A L + +Y+ D+ +D G L + +L L+ VI +
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 799 THQVEFLPAADLILVMK 815
TH E AD ++ +K
Sbjct: 138 THLPELAELADKLIHIK 154
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 57/243 (23%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP--------KISGTLKLCGTK 683
H L+D++L++ G A+ G G+GKS+LL + G++ +++G + L G
Sbjct: 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEP 72
Query: 684 AYVAQSPWI--------QSGK------IEDNILFGKEMNRERYNAVLDACSLKKDLEI-- 727
+P + Q+ + + +L G+ + R A+ +D EI
Sbjct: 73 LAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALT-----HRDGEIAW 127
Query: 728 --LSFGDQTVIGERGIN-LSGGQKQRIQIARALYQ---------DSDIYLFDDPFSAVD- 774
L+ T + R + LSGG+ R+Q AR L Q L D+P +A+D
Sbjct: 128 QALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDL 187
Query: 775 AH------TGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA--ADLILVMKDGKITQAGKYN 826
AH T L ++ LG+L+ + H L A AD I ++ DG I G
Sbjct: 188 AHQHRLLDTVRRLARDWNLGVLA------IVHDPN-LAARHADRIAMLADGAIVAHGAPA 240
Query: 827 DLI 829
D++
Sbjct: 241 DVL 243
|
Length = 272 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 27/172 (15%)
Query: 646 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------AYVAQSPWIQ 693
G + V G G GK++LL + G + SG ++ GT Y+ P ++
Sbjct: 26 GEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLK 85
Query: 694 SG-KIEDNILFGKEMNRERYNAVLDACSLK--KDLEILSFGDQTVIGERGINLSGGQKQR 750
+N+ F ++ + DA + E L LS GQ++R
Sbjct: 86 PELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAA----------QLSAGQQRR 135
Query: 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK-TVIYVTHQ 801
+ +AR + +++ D+P +A+D G L +L L+ V+ THQ
Sbjct: 136 LALARLWLSRAPLWILDEPTTALDK-AGVALLAGLLRAHLARGGIVLLTTHQ 186
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-05
Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 47/219 (21%)
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------TKAYVAQ- 688
++I+L+V G + + G VG+G++ L + G P G + L G T +A+
Sbjct: 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339
Query: 689 ----------------SP--WIQSGKIEDNILFGKEMNRERYNAVLD----ACSLKKDLE 726
+P W + F + RE AVL+ A ++K
Sbjct: 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN--AVLERYRRALNIK---- 393
Query: 727 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786
+ +Q R LSGG +Q++ IA+ L + + D+P VD + ++Q L
Sbjct: 394 -FNHAEQAA---RT--LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ--L 445
Query: 787 LGLLSSKTV--IYVTHQV-EFLPAADLILVMKDGKITQA 822
+ ++++ V ++++ + E AD +LVM G+I+ A
Sbjct: 446 IRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGA 484
|
Length = 510 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 9e-05
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 37/183 (20%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI---GLHD 1318
VL +S + GE IVG +GSGKSTL+ L + P +G ++ +G +S + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 1319 LRSR-LSIIPQ---------------DPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLG 1362
LR++ L I Q P++ + E +
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPA--------------EINSRAL-- 127
Query: 1363 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ 1422
E+ G L+ + S G+RQ V + R L+ ++++ DE T ++D + I
Sbjct: 128 -EMLAAVG-LEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIF 185
Query: 1423 QTL 1425
Q L
Sbjct: 186 QLL 188
|
Length = 233 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 9e-05
Identities = 48/202 (23%), Positives = 89/202 (44%), Gaps = 32/202 (15%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI--------SL 1313
L +S TF T I G G GKS+L++ + I++P++G I +I +
Sbjct: 15 NLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTY 74
Query: 1314 IGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTD--EQIWEALDKCQLGDEVRKKEGK 1371
IG H+L +L E TV NL E + E ++ A+ +L D + +K
Sbjct: 75 IG-HNLGLKL----------EMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYS 123
Query: 1372 LDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSD 1431
L S G +++V + R++ +S + +LDE ++ +L+ + +
Sbjct: 124 LSS-----------GMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANS 172
Query: 1432 CTVLTIAHRITSVIDSDLVLLL 1453
++ ++ + S I S +L L
Sbjct: 173 GGIVLLSSHLESSIKSAQILQL 194
|
Length = 195 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 9e-05
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 736 IGERGINLSGGQKQRIQIARALY---QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS 792
+G+ +LS +K I+IA+ LY + ++L D+ +++D S L L L+S
Sbjct: 1693 LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSAL-LVQLRTLVSL 1751
Query: 793 -KTVIYVTHQVEFLPAADLILVMKDGKITQAGK 824
+VIY+ H L AD ++ M G GK
Sbjct: 1752 GHSVIYIDHDPALLKQADYLIEMGPGSGKTGGK 1784
|
Length = 1809 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 9e-05
Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 57/214 (26%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC-GTK-AYVAQSPWIQ 693
LKDI+L F G ++ V G G+GKS+LL + G + G + G K Y+ Q P +
Sbjct: 23 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD 82
Query: 694 SGK-IEDNILFG----KEMNRERYNAV---------------------------LDACSL 721
K + +N+ G K +R+N + DA L
Sbjct: 83 PEKTVRENVEEGVAEVKAA-LDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDL 141
Query: 722 KKDLEI------LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA 775
LEI D V LSGG+++R+ + R L + D+ L D+P + +DA
Sbjct: 142 DSQLEIAMDALRCPPWDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDA 196
Query: 776 HTGS----HLFQEVLLGLLSSKTVIYVTHQVEFL 805
+ + L TV+ VTH FL
Sbjct: 197 ESVAWLEQFLHD-------YPGTVVAVTHDRYFL 223
|
Length = 556 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 36/216 (16%)
Query: 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAA--GQILIDGIDISLIGLHD-LRSRLSIIPQD 1329
GE GI G G+G++ L+Q LF P G+I IDG + + + ++++P+D
Sbjct: 288 GEILGIAGLVGAGRTELVQCLFG-AYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPED 346
Query: 1330 -------PVMFEG---TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1379
PVM G T+ + LD + +I +A + + + +++ + K S
Sbjct: 347 RKRDGIVPVMGVGKNITL-AALDRF--TGGSRIDDAAELKTILESIQRLKVKTASPELAI 403
Query: 1380 GENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD----NLIQQTLRQHFSDCTVL 1435
S G +Q L + LL KIL+LDE T +D LI Q ++Q + ++
Sbjct: 404 A-RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVA---II 459
Query: 1436 TIAHRITSVID-SDLVL----------LLNHGLIEE 1460
I+ + V+ SD VL L+NH L +E
Sbjct: 460 VISSELPEVLGLSDRVLVMHEGKLKGDLINHNLTQE 495
|
Length = 506 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 40/213 (18%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
LK I+ + G V G G+GK++ L + G + SG +++ G V PW +
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG---LV---PWKR 88
Query: 694 SGKIEDNI--LFGK--------------EMNRERYNAVLDACSLKKDLEILS-------F 730
K I +FG+ + Y+ L KK L+ LS
Sbjct: 89 RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYD--LPPARFKKRLDELSELLDLEEL 146
Query: 731 GDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL 790
D V R LS GQ+ R +IA AL + +I D+P +D + L
Sbjct: 147 LDTPV---R--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA-QENIRNFLKEYN 200
Query: 791 SSK--TVIYVTHQVEFLPA-ADLILVMKDGKIT 820
+ TV+ +H ++ + A A +LV+ G++
Sbjct: 201 RERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 744 SGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKT------VIY 797
SGG +QR+QIAR L + D+P +D Q LL LL V+
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSV-----QARLLDLLRGLVRELGLAVVI 207
Query: 798 VTHQ---VEFLPAADLILVMKDGKITQAG 823
VTH L A +LVMK G++ ++G
Sbjct: 208 VTHDLAVARLL--AHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 45/198 (22%), Positives = 77/198 (38%), Gaps = 28/198 (14%)
Query: 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-RSRLSIIPQDPV 1331
GE +VG G+GKSTL+ + + +G I G + +L R R + Q
Sbjct: 25 GEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTP 83
Query: 1332 MFEGTVRSNL---DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388
F V L P + T E + + L D++ + +L S G+
Sbjct: 84 PFAMPVWHYLTLHQPDKTRT-ELLNDVAGALALDDKLGRSTNQL-----------SGGEW 131
Query: 1389 QLVCLGRVLLK-------RSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAH 1439
Q V L V+L+ ++L+LDE S+D A + + + L ++ +H
Sbjct: 132 QRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLL-SALCQQGLAIVMSSH 190
Query: 1440 RITSVI-DSDLVLLLNHG 1456
+ + + LL G
Sbjct: 191 DLNHTLRHAHRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 55/223 (24%), Positives = 89/223 (39%), Gaps = 47/223 (21%)
Query: 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVP---KIS------GTLKL 679
H L +++L + G VA+ G G GKS+L ++G E P +S L
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
Query: 680 CGTKAY------VAQSP-----------WIQSGKIEDNILFGKEMNRERYNAVLDACSLK 722
KA+ V Q I + + K R + +L A L
Sbjct: 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDL- 140
Query: 723 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLF 782
D +L +R LSGGQ QR+ +ARAL + + + D+ S +D + +
Sbjct: 141 -DDSVLD--------KRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVI 191
Query: 783 QEVLLGLLSSKT---VIYVTHQ---VEFLPAADLILVMKDGKI 819
+ LL L + +++TH VE ++VM +G+I
Sbjct: 192 R--LLKKLQQQFGTACLFITHDLRLVERF--CQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 36/173 (20%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG--------IDISL 1313
L I+ P GE ++G +G+GKS+L++ L + P +G + I G
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 1314 IGLHDLRSRLSIIPQD----PVMFEGTVRSNL--DPL------EESTDEQIWEALDKCQL 1361
I LR + ++ Q P + TV+ NL P ++ + + L++ +L
Sbjct: 77 IRE--LRRNVGMVFQQYNLWPHL---TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRL 131
Query: 1362 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
+ L S GQ+Q V + R L+ ++L+ DE TA++D
Sbjct: 132 KPYADRFPLHL-----------SGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
|
Length = 242 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 57/236 (24%), Positives = 99/236 (41%), Gaps = 61/236 (25%)
Query: 635 TLK---DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---TKAYVAQ 688
TLK + L+++ G + V G G GKS+ I+G V G + G +
Sbjct: 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDE 92
Query: 689 -------------------SPWIQSGKI--EDNILFGKEMNR----ERYNAVLDACSLKK 723
+P + G+I E + +++R +R A++ L
Sbjct: 93 WRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP 152
Query: 724 DLEILSFGDQTVIGERGIN-----LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTG 778
+L IN SGGQ QRI IARAL + + + D+P SA+D
Sbjct: 153 NL---------------INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQ 197
Query: 779 S---HLFQEVL--LGLLSSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDL 828
+ +L Q++ +GL ++I++ H + + +D +LVM G + G Y+++
Sbjct: 198 AQVVNLLQQLQREMGL----SLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 57/189 (30%), Positives = 81/189 (42%), Gaps = 42/189 (22%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--AYVAQSP--- 690
+ D++ K+ G V V G G+GKS+L I G+ SGT+K+ T AYV QS
Sbjct: 338 IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 397
Query: 691 ------W--IQSGKIEDNILFGK-EMNRERYNAVLDACSLKKDLEILSF----GDQT-VI 736
W I G D I GK E+ Y F DQ +
Sbjct: 398 DPNKTVWEEISGG--LDIIQLGKREVPSRAY------VG--------RFNFKGSDQQKKV 441
Query: 737 GERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVI 796
G+ LSGG++ R+ +A+ L ++ L D+P + +D T L +E LL VI
Sbjct: 442 GQ----LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRAL-EEALLEFAGCAVVI 496
Query: 797 YVTHQVEFL 805
+H FL
Sbjct: 497 --SHDRWFL 503
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 2e-04
Identities = 56/220 (25%), Positives = 95/220 (43%), Gaps = 65/220 (29%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
+L+ IS +F G K G++G G+GKSTL+ RI + G+D G +
Sbjct: 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLL----RI---------MAGVDKEFEG----EA 64
Query: 1322 RLS------IIPQDPVMFEG-TVRSNL-DPLEESTD-----EQIWEAL-DKCQLGDEVRK 1367
R + +PQ+P + TVR N+ + + E +I+ A + D +
Sbjct: 65 RPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAA 124
Query: 1368 KEGKL----------------------------DSKVTENGENWSMGQRQLVCLGRVLLK 1399
++G+L D+KVT S G+R+ V L R+LL+
Sbjct: 125 EQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT----KLSGGERRRVALCRLLLE 180
Query: 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439
+ +L+LDE T +D + ++Q L + TV+ + H
Sbjct: 181 KPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTH 218
|
Length = 556 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 52/215 (24%), Positives = 90/215 (41%), Gaps = 34/215 (15%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
+D+++L Y Q +LQ IS P G + G G+GK+TL++ + ++ P G+IL
Sbjct: 2 LDVIELDFDYHDQ--PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEIL 59
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEG---------TVRSN--LDPLEESTDEQIWE 1354
+ I DL + Q + F G T+R N D I E
Sbjct: 60 FERQSIK----KDLCTY-----QKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITE 110
Query: 1355 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
L + G L S GQ++ V L R+ + ++K+ +LDE ++D
Sbjct: 111 LCRLFSLEHLIDYPCGLL-----------SSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159
Query: 1415 TATDNLIQQTLRQHFSD-CTVLTIAHRITSVIDSD 1448
+ I +++H + VL +H+ + +D
Sbjct: 160 ELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKAD 194
|
Length = 200 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 24/220 (10%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 691
+K ++ + G +A+ G GSGKS+L + G + SG L + + +
Sbjct: 25 TVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSY 84
Query: 692 IQSGKIEDNILFGKEMN----RERYNAVLDA-CSLKKDLEILSFGDQTVIGERGINL--- 743
+S +I ++F R+R + +LD L DLE Q + R + L
Sbjct: 85 -RSQRIR--MIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPD 141
Query: 744 ---------SGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKT 794
+ GQKQR+ +ARAL + + D+ +++D S L ++L L +
Sbjct: 142 HASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN-LMLELQEKQG 200
Query: 795 V--IYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINS 831
+ IYVT + + +D +LVM G++ + G D++ S
Sbjct: 201 ISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-04
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 31/200 (15%)
Query: 634 PTL-KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 692
P L K++N + R+A+ G G GKS++L I GE+ SGT V +S +
Sbjct: 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGT---------VFRSAKV 572
Query: 693 QSGKIEDNILFGKEMNRER-------YNAVLDACSLKKDLEILSFGDQTVIGERGIN--- 742
+ + + G +++ + V + K + SFG V G +
Sbjct: 573 RMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ---KLRAHLGSFG---VTGNLALQPMY 626
Query: 743 -LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQ 801
LSGGQK R+ A+ ++ I L D+P + +D L Q + +L V+ V+H
Sbjct: 627 TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL---VLFQGGVLMVSHD 683
Query: 802 VEFLPAA-DLILVMKDGKIT 820
+ + D + V+ +GK+T
Sbjct: 684 EHLISGSVDELWVVSEGKVT 703
|
Length = 718 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 56/283 (19%), Positives = 104/283 (36%), Gaps = 47/283 (16%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
++DI+ ++ G V G G+GKS+ L + G + SG +++ G + P+ +
Sbjct: 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG------KDPFRR 91
Query: 694 SGKIEDNI--LFGKEMNRERYNAVLDACSLKKDL----------------EILSFGDQTV 735
+ +I + G+++ LD+ + K + EIL
Sbjct: 92 REEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGF-- 149
Query: 736 IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK-- 793
+ LS GQ+ R ++A AL + D+P +D + Q + L
Sbjct: 150 LKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNA-----QANIREFLKEYNE 204
Query: 794 ----TVIYVTH---QVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQAL 846
TV+ TH + L D +L++ G++ G L + E +QA
Sbjct: 205 ERQATVLLTTHIFDDIATLC--DRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELKQA- 261
Query: 847 LALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKAD 889
+L + G N I N + +E + A+
Sbjct: 262 KSLSQLALLGDVTIEEGLN----IKNDVSREESADIIAKLLAE 300
|
Length = 325 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 5e-04
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 738 ERGI-NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAH---TGSHLFQEVLLGLLSSK 793
+R I LSGG+ QR+ IA AL +D+D Y FD+P S +D + L +E L K
Sbjct: 207 DRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRE----LAEGK 262
Query: 794 TVIYVTHQVEFLPA-ADLILVM 814
V+ V H + L AD + +
Sbjct: 263 YVLVVEHDLAVLDYLADNVHIA 284
|
Length = 590 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 18/102 (17%)
Query: 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVD-AHTGSHLFQEVLLGL---LSSK---T 794
+LSGG++QR IA + QDS L D+P SA+D AH Q +L L LS + T
Sbjct: 147 SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH------QVDVLALVHRLSQERGLT 200
Query: 795 VIYVTHQVEFLPAA---DLILVMKDGKITQAGKYNDLINSGT 833
VI V H + AA D ++ ++ G++ G +L+ T
Sbjct: 201 VIAVLHDINM--AARYCDYLVALRGGEMIAQGTPAELMRGET 240
|
Length = 265 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 6e-04
Identities = 51/238 (21%), Positives = 94/238 (39%), Gaps = 46/238 (19%)
Query: 627 WD-ISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAY 685
WD I+ H + D++ + G + V G VG+G++ L+ + G P +
Sbjct: 266 WDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG------KFEGNVF 319
Query: 686 VAQSPWIQSGKIEDNILFGKEM---NRERYNAVLD-ACSLKKDLEIL-SFGDQTVIGE-- 738
+ P + I G M +R+R+ V L +L SF + I
Sbjct: 320 INGKP-VDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA 378
Query: 739 ------RGIN---------------LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHT 777
I LSGG +Q+ +A+ L + + + D+P VD
Sbjct: 379 ELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGA 438
Query: 778 GSHLFQEVLLGLLSSK--TVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDLINSG 832
+++ L+ L+ + +I V+ ++ E L +D +LV+ +GK+ D +N
Sbjct: 439 KYEIYK--LINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK-----GDFVNHA 489
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-04
Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 34/208 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP----- 690
L L V+ G +A+ G G+GKS+++ + G + +G++ G K P
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG-KEVTFNGPKSSQE 78
Query: 691 -----------WIQSGKIEDNILFGKEMNRERYNAVL------DACSLKKDLEILSFGDQ 733
I I +NI G+E R+ + +A L L L F
Sbjct: 79 AGIGIIHQELNLIPQLTIAENIFLGREF-VNRFGRIDWKKMYAEADKLLARLN-LRFSSD 136
Query: 734 TVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAV-DAHTGSHLFQEVLLGLLSS 792
++GE LS G++Q ++IA+ L +S + + D+P A+ D T S LF+ V+ L S
Sbjct: 137 KLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETES-LFR-VIRELKSQ 190
Query: 793 KT-VIYVTHQV-EFLPAADLILVMKDGK 818
++Y++H++ E D + V +DG+
Sbjct: 191 GRGIVYISHRLKEIFEICDDVTVFRDGQ 218
|
Length = 501 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 7e-04
Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 15/190 (7%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309
DL V + ++ +S GE GI G G+G+S L++ + + +PA+G+IL++G
Sbjct: 262 DLSV-KDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGK 320
Query: 1310 DISLIGLHDLRSRLSI--IPQDP-----VM----FEGTVRSNLDPLEESTDEQI-WEALD 1357
D+ R RL + +P+D V+ E V D S + A+
Sbjct: 321 DVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIR 380
Query: 1358 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT 1417
K E+ ++ + S G +Q + L R L +R +L+ + T +D
Sbjct: 381 K--FARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGA 438
Query: 1418 DNLIQQTLRQ 1427
I + L +
Sbjct: 439 IEFIHERLLE 448
|
Length = 501 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 7e-04
Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 44/225 (19%)
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------- 683
+++ +++ G A+ G G GKS+LL + + G + L G
Sbjct: 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83
Query: 684 ---AYVAQSP-------WIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQ 733
A A +P + G+ LF + +E AV A + I DQ
Sbjct: 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTR-WRKEDEEAVTKA---MQATGITHLADQ 139
Query: 734 TVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS- 792
+V LSGGQ+QR IA L Q++ I L D+P + +D SH Q LL LLS
Sbjct: 140 SVD-----TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDI---SH--QIDLLELLSEL 189
Query: 793 -----KTVIYVTHQV-EFLPAADLILVMKDGKITQAGKYNDLINS 831
T+ V H + + A ++ +++GKI G +++ +
Sbjct: 190 NREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTA 234
|
Length = 265 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-04
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVD 774
LSGG+ QR+ IA AL +++D+YL D+P + +D
Sbjct: 455 ELSGGELQRVAIAAALSREADLYLLDEPSAYLD 487
|
Length = 591 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 8e-04
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAV-DAHTGSHLFQEVLLGLLSSKTVIYVTH 800
LS GQKQ ++I L QD + L D+P + + D T E+L L +V+ V H
Sbjct: 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEET--EKTAELLKSLAGKHSVVVVEH 200
Query: 801 QVEFLPA-ADLILVMKDGKI 819
+EF+ + AD + V+ G +
Sbjct: 201 DMEFVRSIADKVTVLHQGSV 220
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 8e-04
Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD- 1318
P + + IS + GE G+ G G+G+S L++ L+ AGQ+ +DG I + D
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA 325
Query: 1319 LRSRLSIIPQDPVMFEG-----TVRSNLD--------PLEESTDEQIWEALDKCQLGDEV 1365
+R+ + + P+D EG +V N++ + + WEA + D
Sbjct: 326 IRAGIMLCPEDR-KAEGIIPVHSVADNINISARRHHLRAGCLINNR-WEA----ENADRF 379
Query: 1366 RKKEGKLDSKVTENGE----NWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
+ L+ K T + E N S G +Q LGR L + K+++LDE T +D
Sbjct: 380 IR---SLNIK-TPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGID 428
|
Length = 501 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 8e-04
Identities = 17/31 (54%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSA 772
+LSGG+ QR+ IA L +D+D+YL D+P SA
Sbjct: 453 DLSGGELQRVAIAACLSRDADLYLLDEP-SA 482
|
Length = 590 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 9e-04
Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 62/190 (32%)
Query: 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVM 1332
GE IVG GSGK+TL + L R + P G ++ + L + D + +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIV------- 54
Query: 1333 FEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392
G+ S +
Sbjct: 55 ----------------------------------------------GGKKASGSGELRLR 68
Query: 1393 LGRVLLKRS--KILMLDEATASVDTATDNLIQQTLR-------QHFSDCTVLTIAHRITS 1443
L L ++ +L+LDE T+ +D + L+ + + TV+ +
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Query: 1444 VIDSDLVLLL 1453
+ + L
Sbjct: 129 LGPALLRRRF 138
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 9e-04
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK--TVIYVTH 800
LSGG QR+ IA A+ + + D+P +A+D + + E+LL L + ++ +TH
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQII-ELLLELQQKENMALVLITH 212
Query: 801 QVEFLP-AADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQALL 847
+ + AA I+VM G++ + GK +D+ F + QALL
Sbjct: 213 DLALVAEAAHKIIVMYAGQVVETGKAHDI------FRAPRHPYTQALL 254
|
Length = 326 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 46/206 (22%)
Query: 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-LRSRLS 1324
IS GE G+ G G+G++ L +TL+ + G+I+++G +I+ + L L
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 1325 IIPQDP----VMFEGTVRSN------------LDPLEES-TDEQIWEALD-KCQLGD-EV 1365
+P+D + + + N + P E+ E+ AL+ K +
Sbjct: 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA 401
Query: 1366 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTL 1425
R G G +Q V + + L ++L++DE T VD + N I Q +
Sbjct: 402 RTLSG---------------GNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLI 446
Query: 1426 RQHFSDCTVLTIAHRITSV--IDSDL 1449
R +IA + +V I SDL
Sbjct: 447 R---------SIAAQNVAVLFISSDL 463
|
Length = 510 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 723 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVD 774
K L+I D+ V LSGG+ QR+ IA L +D+DIYL D+P + +D
Sbjct: 101 KPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 24/210 (11%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA--AGQILIDGIDISLIGLHDL 1319
+L G++ GE ++G +GSGKSTL+ L ++ G IL + + +
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQI 138
Query: 1320 RSRLSIIPQDPVMFEG-TVRSNLD-----PLEESTDEQIWEALDKCQLGDEVRKKEGKLD 1373
R + QD +++ TVR L L +S +Q +K + + V + G
Sbjct: 139 LKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQ-----EKILVAESVISELGLTK 193
Query: 1374 SKVTENGENW----SMGQRQLVCLGRVLLKRSKILMLDEATASVD-TATDNLIQQTLRQH 1428
+ T G ++ S G+R+ V + +L +L+LDE T+ +D TA L+
Sbjct: 194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLA 253
Query: 1429 FSDCTVLTIAHRITSVIDS--DLVLLLNHG 1456
T++T H+ +S + D VL+L+ G
Sbjct: 254 QKGKTIVTSMHQPSSRVYQMFDSVLVLSEG 283
|
Length = 659 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 37/183 (20%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI---GLHD 1318
+L G+ GE ++G +GSGKSTL+ L + + ++G++ + G + +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 1319 LRSR--------LSIIP--------QDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLG 1362
LR++ +IP + P + G + L++ LG
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGES-------SRQSRNGAKALLEQLGLG 137
Query: 1363 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ 1422
+ +L S G++Q V L R R +L DE T ++D T + I
Sbjct: 138 KRLDHLPAQL-----------SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIA 186
Query: 1423 QTL 1425
L
Sbjct: 187 DLL 189
|
Length = 228 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 0.001
Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 50/179 (27%)
Query: 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR-SRLSIIPQDPV 1331
E+ +VGR G+GKSTL++ L G++L+D D +I DL +RL QDP
Sbjct: 29 NERVCLVGRNGAGKSTLMKIL-------NGEVLLD--DGRIIYEQDLIVARL---QQDPP 76
Query: 1332 M-FEGTV--------------------RSNL---DPLEESTDE--QIWEALDKC---QLG 1362
EGTV S+L DP E++ +E ++ E LD QL
Sbjct: 77 RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLE 136
Query: 1363 DEVRKKEGKL----DSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT 1417
+ + + +L D+ ++ W R+ LGR L+ +L+LDE T +D T
Sbjct: 137 NRINEVLAQLGLDPDAALSSLSGGW---LRK-AALGRALVSNPDVLLLDEPTNHLDIET 191
|
Length = 635 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.002
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 22/102 (21%)
Query: 1206 DLENKIISVERIFQYTCIPSEPPLAIEES----------RPNDSWPSHGKIDLLDLQVRY 1255
D EN +S E+ + PL I +S R + GKI+++D+ RY
Sbjct: 1125 DSENAKLSFEKYY---------PLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRY 1175
Query: 1256 A--PQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR 1295
P +P + + ++ + + T IVG TGSGKST++ L R
Sbjct: 1176 ISRPNVP-IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMR 1216
|
Length = 1466 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 25/238 (10%)
Query: 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI---LIDGIDISLIGLHD---- 1318
+S GE GIVG +GSGKSTL+ L + P G + G ++ L L +
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81
Query: 1319 --LRSRLSIIPQDP-------VMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKE 1369
+R+ + Q+P V + L + I +EV
Sbjct: 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWL--EEVEIDP 139
Query: 1370 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF 1429
++D +S G +Q + + R L+ R +++ +DE T +D + + LR
Sbjct: 140 TRIDDLPRA----FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 195
Query: 1430 SD--CTVLTIAHRITSV-IDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTL 1484
D V+ + H + + + +L++ G + E +L++ ++QL+ L
Sbjct: 196 RDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLLVSSIL 253
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 46/206 (22%), Positives = 94/206 (45%), Gaps = 39/206 (18%)
Query: 1263 LQGISCTFPG-------------GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309
+ IS +FPG ++G G+GKSTL++ LF I + +G IL G
Sbjct: 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGK 60
Query: 1310 DISL-IGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEA--------LDKCQ 1360
+I L + +S++ Q+ NL L+ S + +W +D+ +
Sbjct: 61 EIDFKSSKEALENGISMVHQE---------LNL-VLQRSVMDNMWLGRYPTKGMFVDQDK 110
Query: 1361 LGDEVRKKEGKLDSKV--TENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASV-DTAT 1417
+ + + +LD + S+ Q Q++ + + +KI+++DE T+S+ +
Sbjct: 111 MYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEV 170
Query: 1418 DNL--IQQTLRQHFSDCTVLTIAHRI 1441
++L I + L++ C ++ I+H++
Sbjct: 171 NHLFTIIRKLKE--RGCGIVYISHKM 194
|
Length = 491 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.002
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 52/197 (26%)
Query: 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI-DGIDISLIGLHDL 1319
L++ +S P G G++G G+GKSTL + + +P +G I I + + ++ +
Sbjct: 336 LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVD---- 391
Query: 1320 RSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGD-EV------------- 1365
Q R LDP ++ E+I LD QLG EV
Sbjct: 392 --------QS--------RDALDP-NKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKG 434
Query: 1366 ---RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ 1422
+KK G+L S G+R V L + L +L+LDE T +D T ++
Sbjct: 435 SDQQKKVGQL-----------SGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALE 483
Query: 1423 QTLRQHFSDCTVLTIAH 1439
+ L F+ C V+ I+H
Sbjct: 484 EAL-LEFAGCAVV-ISH 498
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 32/159 (20%)
Query: 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAA---GQILIDGIDISLIGLHDLRSRLSIIPQD 1329
GE ++GR GSG STL++ L E G I +GI + + ++
Sbjct: 33 GEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK-YPGEIIYVSEE 91
Query: 1330 PVMF-EGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388
V F TVR LD AL +C+ + VR G G+R
Sbjct: 92 DVHFPTLTVRETLD-----------FAL-RCKGNEFVRGISG---------------GER 124
Query: 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ 1427
+ V + L+ R+ +L D +T +D++T I + +R
Sbjct: 125 KRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRT 163
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.002
Identities = 40/206 (19%), Positives = 83/206 (40%), Gaps = 27/206 (13%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
VL+ ++ G+ +VG++G+GK+TL++ + G G + + S
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMI-------LGAQKGRGEEK-----YRPDS 445
Query: 1322 RLSIIPQDPV--MFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLD-SKVTE 1378
+P++ V + G E + E + E+ + G D
Sbjct: 446 GKVEVPKNTVSALIPGEYEPEFG--EVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRR 503
Query: 1379 NGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDC-----T 1433
S GQ++ L ++L +R +L++DE A +D T + R+ T
Sbjct: 504 KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELT---AVRVARKISELAREAGIT 560
Query: 1434 VLTIAHR--ITSVIDSDLVLLLNHGL 1457
++ + HR + + + D ++L+ +G
Sbjct: 561 LIVVTHRPEVGNALRPDTLILVGYGK 586
|
Length = 593 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 58/240 (24%), Positives = 95/240 (39%), Gaps = 45/240 (18%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLF-RIVEPAA-------GQILIDGIDISL 1313
+L+ +S G T ++GR G+GKSTL++ L + A G + ++G ++
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 1314 IGLHDLRSRLSIIPQ--DPVMFEGTVRSNL-----------DPLEESTDEQIWEALDKCQ 1360
I L +++PQ P F + R + L E W+AL
Sbjct: 76 IDAPRLARLRAVLPQAAQPA-FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG 134
Query: 1361 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK---------RSKILMLDEATA 1411
V + L S G+ V RVL + + L+LDE TA
Sbjct: 135 ATALVGRDVTTL-----------SGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTA 183
Query: 1412 SVDTATDNLIQQTLRQHFSD--CTVLTIAHRIT-SVIDSDLVLLLNHGLIEEFDNPANLL 1468
++D A + + T+R+ D VL I H + +D + +L G I PA++L
Sbjct: 184 ALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.002
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 33/148 (22%)
Query: 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQ---- 1328
GE GIVG G GK+T + L +++P G++ + ++S PQ
Sbjct: 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKP 411
Query: 1329 DPVMFEGTVRSNLDPLEESTDEQIW--EALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1386
D ++GTV L + + + E + QL E LD V + S G
Sbjct: 412 D---YDGTVEDLLRSITDDLGSSYYKSEIIKPLQL-------ERLLDKNVKD----LSGG 457
Query: 1387 QRQLVCLGRVLLKRSKILMLDEATASVD 1414
+ Q V + L + + + +LDE +A +D
Sbjct: 458 ELQRVAIAACLSRDADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.002
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLI-QTLFRIVEP-AAGQILIDGIDISLIGLHDLR 1320
L+ I+ + P G T I G +GSGKSTLI TL+ + G + G S+ GL L
Sbjct: 624 LKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALANRLNGAKTVPGRYTSIEGLEHL- 682
Query: 1321 SRLSIIPQDPVMFEG-TVRSN 1340
++ I Q P+ G T RSN
Sbjct: 683 DKVIHIDQSPI---GRTPRSN 700
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.002
Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 41/212 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSC---------ILGEVPKISGTLKLCGTKAYV 686
L+++ G+ A+ G G+GK++L+ I G++ +ISG K T A +
Sbjct: 896 LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI-RISGFPKKQETFARI 954
Query: 687 AQSPWIQSGKIEDNILFGKEMN-RER--YNAVLDACSLKKDL---EILSFGDQ------- 733
SG E N + ++ RE Y+A L L K++ E + F D+
Sbjct: 955 -------SGYCEQNDIHSPQVTVRESLIYSAFL---RLPKEVSKEEKMMFVDEVMELVEL 1004
Query: 734 -----TVIGERGIN-LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL 787
++G G+ LS Q++R+ IA L + I D+P S +DA + + + V
Sbjct: 1005 DNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1064
Query: 788 GLLSSKTVIYVTHQ--VEFLPAADLILVMKDG 817
+ + +TV+ HQ ++ A D +L+MK G
Sbjct: 1065 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096
|
Length = 1470 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 34/220 (15%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK---ISGTLKLCGTKAYVAQS 689
N LK +NL + G A+ G GSGKS+L I G P + G + G ++ +
Sbjct: 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH-PAYKILEGDILFKG-ESILDLE 77
Query: 690 PWIQSGK---------IEDNILFGKEMNRERYNAVLDACSLKKDLEILSF---------- 730
P ++ IE + + R YN+ L +L+ L F
Sbjct: 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGL-PELDPLEFLEIINEKLKL 136
Query: 731 -GDQTVIGERGIN--LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL 787
G R +N SGG+K+R +I + DS++ + D+ S +D + + +
Sbjct: 137 VGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINK 196
Query: 788 GLLSSKTVIYVTHQVEFL----PAADLILVMKDGKITQAG 823
+ S ++I +TH L P D + VM++GKI + G
Sbjct: 197 LMTSENSIILITHYQRLLDYIKP--DYVHVMQNGKIIKTG 234
|
Length = 252 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 48/212 (22%), Positives = 86/212 (40%), Gaps = 51/212 (24%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID---GIDISLIG---- 1315
L + GE ++G +GSGKSTL++ L +G I D G I L+G
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHL-------SGLITGDKSAGSHIELLGRTVQ 72
Query: 1316 -----LHDLR----------------SRLSIIPQDPVMFEGTV---RSNLDPLEESTDEQ 1351
D+R +RLS++ + G+ R+ ++
Sbjct: 73 REGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQR 132
Query: 1352 IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATA 1411
+AL + + ++ L S GQ+Q V + R L++++K+++ DE A
Sbjct: 133 ALQALTRVGMVHFAHQRVSTL-----------SGGQQQRVAIARALMQQAKVILADEPIA 181
Query: 1412 SVDTATDNLIQQTLR--QHFSDCTVLTIAHRI 1441
S+D + ++ TLR TV+ H++
Sbjct: 182 SLDPESARIVMDTLRDINQNDGITVVVTLHQV 213
|
Length = 262 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322
++ +S GE GI G G+ ++ +++TLF I E +AG I + G I + +
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKI------NNHNA 317
Query: 1323 LSIIPQDPVMFEGTVRS-----NLDPLEESTDEQIWEALDKCQLGDEVRKKEG------- 1370
I + RS LD S I +K L D R K
Sbjct: 318 NEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDS 377
Query: 1371 ---KLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
K T+ G + S G +Q V +GR LL + +ILMLDE T +D
Sbjct: 378 MRVKTPGHRTQIG-SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGID 423
|
Length = 491 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.003
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLI-QTLFRIVEPAAGQILID-GIDISLIGLHDLR 1320
L+ I P G T + G +GSGKSTLI TL + + G + GL +
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLINDTLVPALARHLNGTKEEPGPYKKIEGLEHI- 675
Query: 1321 SRLSIIPQDPVMFEGTVRSN 1340
++ I Q P+ T RSN
Sbjct: 676 DKVIDIDQSPI--GRTPRSN 693
|
Length = 935 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1496 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-274 Score=2614.14 Aligned_cols=1255 Identities=47% Similarity=0.777 Sum_probs=1166.9
Q ss_pred CCCcccCch--hHHHHHHhHHHHHHccccCCCCCCCCCCCCCCCcHhHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHh
Q 039402 222 LTPYSRAGV--LSVITYSWINSLIALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVKLIKAMFCSV 299 (1496)
Q Consensus 222 ~~p~~~a~~--~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~~l~~al~~~~ 299 (1496)
++|.+.++. +|++||||++|++++|||++|+.+|+|+++++|+++.+.++|++.|+++.++ +.++|+++++++++|
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~--~~~~psl~~al~~~f 199 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGR--SGKKPSLLRALLRTF 199 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhcc--ccCCcHHHHHHHHHH
Confidence 344555555 9999999999999999999999999999999999999999999999998622 225689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 300 WKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAALIA 379 (1496)
Q Consensus 300 ~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~ir~~L~~ 379 (1496)
|+++++.+++..+.+.+.+++|.+++.+++|+++++...+.||+++++++++.++++++.++|+|..+++|+|+|++|.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~ 279 (1381)
T KOG0054|consen 200 GRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALIS 279 (1381)
T ss_pred HHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999999987555678999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039402 380 MIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNI 459 (1496)
Q Consensus 380 ~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~~~~~~~~~~ 459 (1496)
+||+|+|++++.+++++++|+|+|+|++|++|+.++++++|.+|.+|+|+++++++||..+|+++++|++++++++|+|.
T Consensus 280 ~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~ 359 (1381)
T KOG0054|consen 280 AIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNS 359 (1381)
T ss_pred HHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 460 PLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVS 539 (1496)
Q Consensus 460 ~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~ 539 (1496)
+++++++++|++.|+.+|+|++.|+|+|+|||+||+||||+.|.++|++.|++|+++++|..+..+++.++++++|++++
T Consensus 360 ~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~ 439 (1381)
T KOG0054|consen 360 FLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVS 439 (1381)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCccE
Q 039402 540 VATFGTCI-LLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETAL 618 (1496)
Q Consensus 540 ~~~f~~~~-~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i 618 (1496)
+++|++|+ ..++.+++.++|+++++|++|+.|+..+|..++.+.|++||++|+++||..+|.+++.....+.+..+..+
T Consensus 440 ~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i 519 (1381)
T KOG0054|consen 440 VVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAI 519 (1381)
T ss_pred HHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceE
Confidence 99999999 77889999999999999999999999999999999999999999999999999888766543444556789
Q ss_pred EEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHH
Q 039402 619 DIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIE 698 (1496)
Q Consensus 619 ~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~ 698 (1496)
+++|++|+|+.++..++|+||||+|++|+++||||++||||||||++|+||+++.+|+|.++|.+|||||+|||||||||
T Consensus 520 ~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvr 599 (1381)
T KOG0054|consen 520 EIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVR 599 (1381)
T ss_pred EEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHH
Confidence 99999999997666679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 039402 699 DNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTG 778 (1496)
Q Consensus 699 eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~ 778 (1496)
|||+||.++|++||++|+++|+|++|++.||.||+|+|||||.||||||||||+||||+|+|+||||||||+||||+|++
T Consensus 600 eNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg 679 (1381)
T KOG0054|consen 600 ENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVG 679 (1381)
T ss_pred HhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHHHHHhHHHHhhhCCCCCCCCc
Q 039402 779 SHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQALLALGSIEGRPAS 858 (1496)
Q Consensus 779 ~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (1496)
+|||++|+++.+++||+|+|||+++++++||+|++|+||+|.++|+|+|+++.+..+.++.... ..+..+..+ .+..
T Consensus 680 ~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~--~~~~~~~~~-~~~~ 756 (1381)
T KOG0054|consen 680 KHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEE--ESEQEEEAS-EKDL 756 (1381)
T ss_pred HHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhcc--chhhccccc-cccc
Confidence 9999999999999999999999999999999999999999999999999999988888873221 111111000 0000
Q ss_pred cCCCCCCCCccccccchhhhccccCCCCchhhhhhhccchhHHHHHhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039402 859 ERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQ 938 (1496)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~ 938 (1496)
+.. ....... .+ .. + ..+...++..+.+....++.++|+|+.|.|+|++|++|+++.+|++.+++++++.++.+
T Consensus 757 ~~~-~~~~~~~-~~-~~-~--~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~ 830 (1381)
T KOG0054|consen 757 ESG-ESSRESE-SR-SL-E--SLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQ 830 (1381)
T ss_pred ccc-ccccchh-hh-hh-h--hhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 000 0000000 00 00 0 00000000011112245677889999999999999999999888888888888899999
Q ss_pred HHHHHhhhHHHhhcCCCCCCCCc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Q 039402 939 ILQIASNYWIVWATPGTKDVKPV-VTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFD 1017 (1496)
Q Consensus 939 ~~~~~~~~wl~~~~~~~~~~~~~-~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd 1017 (1496)
+++++++|||++|++........ .+...|+++|.+++++++++.++|++.+...++++|+.+|++|+++++|+||+|||
T Consensus 831 ~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd 910 (1381)
T KOG0054|consen 831 VLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD 910 (1381)
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC
Confidence 99999999999998754322221 46778999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1018 ATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVG 1097 (1496)
Q Consensus 1018 ~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~ 1097 (1496)
+||+|||+||||+|++.+|..+|..+..++..+++++++++++++++|+++++++|+.++|+++++||++++||++|+++
T Consensus 911 tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLes 990 (1381)
T KOG0054|consen 911 TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLES 990 (1381)
T ss_pred CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 039402 1098 VCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGF 1177 (1496)
Q Consensus 1098 ~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~g~ 1177 (1496)
++|||+++||+||++|+.|||||+++++|.+++..++|.+++++|+..+++||+++|+|+++++++++++++.+..+.+.
T Consensus 991 itRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~ 1070 (1381)
T KOG0054|consen 991 ITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL 1070 (1381)
T ss_pred cccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888777666
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCC
Q 039402 1178 IDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAP 1257 (1496)
Q Consensus 1178 ~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~ 1257 (1496)
.+||.+|++++|++++++.++|++++.+++|++|+|||||.||+++|+|+|+..+..+||++||++|+|+|+|+++||+|
T Consensus 1071 ~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp 1150 (1381)
T KOG0054|consen 1071 ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP 1150 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC
Confidence 88999999999999999999999999999999999999999999999998888777779999999999999999999999
Q ss_pred CCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccch
Q 039402 1258 QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTV 1337 (1496)
Q Consensus 1258 ~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTI 1337 (1496)
+.|+|||||||+|+||||||||||||||||||+++|||+.||.+|+|.|||+||+++++||||++++||||||+||+||+
T Consensus 1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTv 1230 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTV 1230 (1381)
T ss_pred CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHH
Q 039402 1338 RSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT 1417 (1496)
Q Consensus 1338 R~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~T 1417 (1496)
|+||||+++|+|+|||+|||+|+|+++|+++|+|||++|.|+|+|||.||||++||||||||++||||||||||++|++|
T Consensus 1231 R~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~T 1310 (1381)
T KOG0054|consen 1231 RFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPET 1310 (1381)
T ss_pred ccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHhhccC
Q 039402 1418 DNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSS 1487 (1496)
Q Consensus 1418 d~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~~~~~ 1487 (1496)
|+.||++||++|+|||||+||||++||+|||||+|||+|+|+|+|+|++|+++++|.|++++.++..++.
T Consensus 1311 D~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~~~~~ 1380 (1381)
T KOG0054|consen 1311 DALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAALSSR 1380 (1381)
T ss_pred HHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999887653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-213 Score=2167.94 Aligned_cols=1439 Identities=32% Similarity=0.537 Sum_probs=1190.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039402 7 FLLKPIFLRWFSCSLHLVLLVGLLVSWVWNKIKTGEGDHNRGSREMFKNKKALWYKLTLACCFGVSLFNIVFSLLSYFYW 86 (1496)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1496)
|.||+++.+..++..+|++++.....+..++..+.+ . .. ...........+.++||....+++...++.. ...
T Consensus 29 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 101 (1622)
T PLN03130 29 YTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQ---R-FC--LRSKWYNYFLALLAAYCTAEPLFRLVMGISV-LNL 101 (1622)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHHhccccccC---C-cc--ccchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcc
Confidence 789999988888877766555544444332211010 0 11 1111222344455555555555554443332 222
Q ss_pred ccC-CccchhhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHH---HHHHHHHhhhhh-hhhccchhhh
Q 039402 87 YEN-GWSDYQLVTLLDFGVKTLGWSAICVCLHTVFLNSRQPKLPILLKLWWAFY---VFISCYCLIVDI-VLCEKQVSLQ 161 (1496)
Q Consensus 87 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~ 161 (1496)
.+. ++.......+...++..+++++.......++.++. .+++.+++||++. .++.++ ... ...... ...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~ 175 (1622)
T PLN03130 102 DGQTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYIREF--RWYVRFAVIYVLVGDAVMLNLV---LSVKEYYSSF-VLY 175 (1622)
T ss_pred ccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceeehhHHHhhHHHHHHHH---HHHHHHHhcc-ccc
Confidence 221 12222333244455555555555553334443333 5789999999887 555544 212 221110 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCccCCCCCCCCCCCCCCCCCCCCCCCcccCchhHHHHHHhHHH
Q 039402 162 IQYLISDVASAMTGLFLCFVGILSKIEGEDALLLREPLLKADSNETDGTVPSIKSEGADKLTPYSRAGVLSVITYSWINS 241 (1496)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~p 241 (1496)
.......+++..+++++ +.+...++.. ...|... +.. .+.+-++.+...+.+||++||+|||++|+|++|
T Consensus 176 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~-~~~---~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~p 245 (1622)
T PLN03130 176 -LYISEVAAQVLFGILLL-VYFPNLDPYP----GYTPIGS-ESV---DDYEYEELPGGEQICPERHANIFSRIFFGWMTP 245 (1622)
T ss_pred -eehhHHHHHHHHHHHHH-HHHhcCCCCc----ccccccc-ccc---ccccccCCcccCCCCcccccCHHHHHHHHHHHH
Confidence 11222233333333331 1111111100 1111100 000 000112223346779999999999999999999
Q ss_pred HHHccccCCCCCCCCCCCCCCCcHhHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039402 242 LIALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVKLIKAMFCSVWKDVLVTGFLTVLYTLASYVGP 321 (1496)
Q Consensus 242 l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P 321 (1496)
++++||+++|+.+|||+|+++|+++.++++|++.|+++. ++++++++++++++||+.++..+++.++..++.+++|
T Consensus 246 l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P 321 (1622)
T PLN03130 246 LMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEEL----KKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGP 321 (1622)
T ss_pred HHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHh----ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999764 2245789999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHH
Q 039402 322 YLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEI 401 (1496)
Q Consensus 322 ~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i 401 (1496)
++++.+++++.+++ ....++.+++++++..++.+++.+++++...++++++|+.++..+|+|.++++...+++.++|++
T Consensus 322 ~ll~~li~~v~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~i 400 (1622)
T PLN03130 322 LLLNLLLESMQNGE-PAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKI 400 (1622)
T ss_pred HHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHH
Confidence 99999999997543 23457777777777767777788888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 402 INFMTVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMK 481 (1496)
Q Consensus 402 ~nl~s~D~~~i~~~~~~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~ 481 (1496)
+|+|++|++++.+++..+|.+|..|++++++++++|..+|+++++++++++++++++..++++.++.+++.++.+|+|.+
T Consensus 401 vnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~ 480 (1622)
T PLN03130 401 TNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIG 480 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Q 039402 482 ATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSA 561 (1496)
Q Consensus 482 ~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~ 561 (1496)
.++|+++|||+||+|+||+.|.+++++.|++|++..++..+..++..++....|.++++++|++|.+.++++|++.+|++
T Consensus 481 ~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~ 560 (1622)
T PLN03130 481 LMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTS 560 (1622)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999998888888777788888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeE
Q 039402 562 IATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINL 641 (1496)
Q Consensus 562 l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l 641 (1496)
+++++.+..|+..+|..+..+.++++|++||++|++.+|..+.... +.......|+++|++|+|+..+++++|+|+||
T Consensus 561 l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~--~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl 638 (1622)
T PLN03130 561 LSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNP--PLEPGLPAISIKNGYFSWDSKAERPTLSNINL 638 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCC--cccCCCCceEEEeeEEEccCCCCCceeeceeE
Confidence 9999999999999999999999999999999999987664321111 11112246999999999975445789999999
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCc-cEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhc
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS-GTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACS 720 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~-G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~ 720 (1496)
+|++||+++|+||+|||||||+++|+|+++|++ |+|.+.|+++||+|+||+|++||||||+||.++|+++|++++++|+
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~ 718 (1622)
T PLN03130 639 DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTA 718 (1622)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhC
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcc
Q 039402 721 LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTH 800 (1496)
Q Consensus 721 l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH 800 (1496)
|++|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++++++++.+.+++||+|+|||
T Consensus 719 L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH 798 (1622)
T PLN03130 719 LQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTN 798 (1622)
T ss_pred cHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred CcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhcc
Q 039402 801 QVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVEN 880 (1496)
Q Consensus 801 ~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1496)
+++.++.||+|++|++|+|+++|+++|+++.++.|.++...+....+.. +.............+. ........
T Consensus 799 ~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~-- 871 (1622)
T PLN03130 799 QLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYV---EENGEEEDDQTSSKPV--ANGNANNL-- 871 (1622)
T ss_pred CHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhcccccccc---cccccccccccccccc--cccccccc--
Confidence 9999999999999999999999999999988877877765432110000 0000000000000000 00000000
Q ss_pred ccCCCCchhhhhhhccchhHHHHHhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCC
Q 039402 881 NKGQNDKADEVAVSKGQLVQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKP 960 (1496)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~ 960 (1496)
.+.. ............+.++|+++.|.+++++|++|+++.++.+++.+++++.++.+++.+++++|+++|++.... .
T Consensus 872 ~~~~-~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~--~ 948 (1622)
T PLN03130 872 KKDS-SSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTP--K 948 (1622)
T ss_pred cccc-cccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--C
Confidence 0000 000000011123556788999999999999999987766666666666778888999999999998853221 1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhh
Q 039402 961 VVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIP 1040 (1496)
Q Consensus 961 ~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~ 1040 (1496)
......|+++|++++++..++.+++.++....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++
T Consensus 949 ~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~ 1028 (1622)
T PLN03130 949 THGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVA 1028 (1622)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence 12245678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHh
Q 039402 1041 SLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSF 1120 (1496)
Q Consensus 1041 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf 1120 (1496)
..+..++..++.+++.++++++++|..+++++|+.+++++++++|.+++|+++|++..+++|+++|+.|+++|+.|||+|
T Consensus 1029 ~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf 1108 (1622)
T PLN03130 1029 VFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAY 1108 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhC
Confidence 99999999999999999999998988888888888888888999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHHHHH
Q 039402 1121 DQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFI-----DPAIAGLAVTYGLTLNT 1195 (1496)
Q Consensus 1121 ~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~g~~-----~~g~~gl~l~y~l~l~~ 1195 (1496)
+++++|.+.+.+..|.+.+..+.....++|+++++++++++++.+.+.+.+.. .+.. .++.+|++++|++.+..
T Consensus 1109 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~-~~~~~~~~~~~~~~G~~ls~~~~~~~ 1187 (1622)
T PLN03130 1109 KAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQ-NGRAENQAAFASTMGLLLSYALNITS 1187 (1622)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccchhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887766555443332 2211 26889999999999999
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcE
Q 039402 1196 LLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEK 1275 (1496)
Q Consensus 1196 ~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~Gek 1275 (1496)
.+.++++.+.++|+.++|+||+.+|.+.|+|++...++..+++.||.+|.|+|+||+|+|+++.++||+|+||+|+||||
T Consensus 1188 ~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~Gek 1267 (1622)
T PLN03130 1188 LLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEK 1267 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCE
Confidence 99999999999999999999999999999887654444556778999999999999999998878899999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHHH
Q 039402 1276 TGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEA 1355 (1496)
Q Consensus 1276 vgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~a 1355 (1496)
||||||||||||||+++|+|+++|++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|||+|
T Consensus 1268 VaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~A 1347 (1622)
T PLN03130 1268 VGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWES 1347 (1622)
T ss_pred EEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 039402 1356 LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVL 1435 (1496)
Q Consensus 1356 L~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI 1435 (1496)
|++|+++|+|.++|+||||+|+|+|.|||||||||+||||||||+|+|||||||||+||.+||+.||++|++.|++||||
T Consensus 1348 l~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI 1427 (1622)
T PLN03130 1348 LERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 1427 (1622)
T ss_pred HHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHhhcc
Q 039402 1436 TIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRS 1486 (1496)
Q Consensus 1436 ~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~~~~ 1486 (1496)
+||||++|+++||||+|||+|+|+|+|+|++|+++++|.|++|+++++..+
T Consensus 1428 ~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~~~ 1478 (1622)
T PLN03130 1428 IIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAAN 1478 (1622)
T ss_pred EEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcChhh
Confidence 999999999999999999999999999999999887899999999887543
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-209 Score=2128.19 Aligned_cols=1435 Identities=31% Similarity=0.517 Sum_probs=1184.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039402 7 FLLKPIFLRWFSCSLHLVLLVGLLVSWVWN-KIKTGEGDHNRGSREMFKNKKALWYKLTLACCFGVSLFNIVFSLLSYFY 85 (1496)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1496)
|.||+++.+..++..+|++++.....+... +.+ .+ . .. ...........+.++|+....+++...+... ..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 100 (1495)
T PLN03232 29 YTPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAK-AQ-I---YV--LRKKYYNCVLGILACYCVVEPVLRLVMGISL-FD 100 (1495)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHHHhhccc-cC-C---cc--ccchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hc
Confidence 789999988877777765555444443331 111 11 0 11 1111122344445555555555443333332 22
Q ss_pred hccC-CccchhhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHH---HHHHHHHhhhhh-hhhccchhh
Q 039402 86 WYEN-GWSDYQLVTLLDFGVKTLGWSAICVCLHTVFLNSRQPKLPILLKLWWAFY---VFISCYCLIVDI-VLCEKQVSL 160 (1496)
Q Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~ 160 (1496)
+.+. .+.......+...++..++++++......++.++. .+++.+++||++. .++.+. ... ...... ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~ 174 (1495)
T PLN03232 101 MDEETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYVKEF--RWYVRFGVVYVLVADAVLLDLV---LPLKNSINRT-AL 174 (1495)
T ss_pred cccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcC--CCCceeeehhHhhhhHHHHHHH---HHHHHHHhcc-cc
Confidence 2221 12122223244556666666666553334443333 5789999999887 555544 212 221110 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCccCCCCCCCCCCCCCCCCCCCCCCCcccCchhHHHHHHhHH
Q 039402 161 QIQYLISDVASAMTGLFLCFVGILSKIEGEDALLLREPLLKADSNETDGTVPSIKSEGADKLTPYSRAGVLSVITYSWIN 240 (1496)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~ 240 (1496)
. ......++.+..+++. +..+...++.+ ...+... +. ..|.+.+..|...+.+||+++|+|||+||+|++
T Consensus 175 ~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~-~~---~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~~ 244 (1495)
T PLN03232 175 Y-LCISSRCCQALFGILL-LVYIPELDPYP----GYHILNN-ES---LDNVEYDALRGGENICPERYASIFSRIYFSWMT 244 (1495)
T ss_pred c-eehhHHHHHHHHHHHH-HHhcccCCCCC----ccccccc-cc---ccccccccccccCCCCccccCCHHHHHHHHHHH
Confidence 1 1112222222222222 11111111000 0000000 00 000111223445678999999999999999999
Q ss_pred HHHHccccCCCCCCCCCCCCCCCcHhHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 039402 241 SLIALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVKLIKAMFCSVWKDVLVTGFLTVLYTLASYVG 320 (1496)
Q Consensus 241 pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (1496)
|++++||+++|+.+|||+|+++|+++.++++|++.|+++. +.++++++++++++||+.++..++++++.+++.+++
T Consensus 245 pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 320 (1495)
T PLN03232 245 PLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEES----RRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVG 320 (1495)
T ss_pred HHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhh----ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999764 224579999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhcCCCHHH
Q 039402 321 PYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGE 400 (1496)
Q Consensus 321 P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~ 400 (1496)
|++++.+++++++++. ...++.+++++++..++.+++.+++++...+++.++|..++..+|+|.++++...+++.++|+
T Consensus 321 P~ll~~li~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~ 399 (1495)
T PLN03232 321 PVILSHLLQSMQEGDP-AWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGK 399 (1495)
T ss_pred HHHHHHHHHHHhcCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHH
Confidence 9999999999975432 345777888888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 401 IINFMTVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERM 480 (1496)
Q Consensus 401 i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~ 480 (1496)
++|+|++|++++.+++..+|.+|..|++++++++++|..+|++++++++++++++|++..++++.++.+++.++.+|+|.
T Consensus 400 i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~ 479 (1495)
T PLN03232 400 VTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRV 479 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888889999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHH
Q 039402 481 KATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLS 560 (1496)
Q Consensus 481 ~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft 560 (1496)
+.++|+++|||+||+|+||+.+.+++++.|++|.+..++..+..++..++....|.++.+++|++|.+.++++|++.+|+
T Consensus 480 ~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~ 559 (1495)
T PLN03232 480 GIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFT 559 (1495)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999998888877777777788888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCccEEEEeeEEEecCCCCCCceeeee
Q 039402 561 AIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDIN 640 (1496)
Q Consensus 561 ~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~ 640 (1496)
++++++.+..|+..+|..+..+.++++|++||++|++.+|...+... +.......++++|++|+|+..+++++|+|+|
T Consensus 560 ~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~--~~~~~~~~I~~~~vsF~y~~~~~~~vL~~in 637 (1495)
T PLN03232 560 SLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNP--PLQPGAPAISIKNGYFSWDSKTSKPTLSDIN 637 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccC--CcCCCCCcEEEEeeEEEcCCCCCCceeeeeE
Confidence 99999999999999999999999999999999999987653221111 1111224699999999997544578999999
Q ss_pred EEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc-EEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHh
Q 039402 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG-TLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC 719 (1496)
Q Consensus 641 l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G-~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~ 719 (1496)
|+|++||+++|+||+|||||||+++|+|+++|++| .+.+.+++|||+|+||+|++||||||+||.++++++|++++++|
T Consensus 638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~ 717 (1495)
T PLN03232 638 LEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVT 717 (1495)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHh
Confidence 99999999999999999999999999999999997 45778999999999999999999999999999999999999999
Q ss_pred chhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc
Q 039402 720 SLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVT 799 (1496)
Q Consensus 720 ~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvt 799 (1496)
+|++|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++++++++.+.+++||+|+||
T Consensus 718 ~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvT 797 (1495)
T PLN03232 718 ALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVT 797 (1495)
T ss_pred CCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred cCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhc
Q 039402 800 HQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVE 879 (1496)
Q Consensus 800 H~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (1496)
|+++.++.||+|++|++|+|+++|+++|+++.++.|.++...+...... . +..+..+.. ....+. .. ...
T Consensus 798 H~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~--~-~~~~~~~~~-~~~~~~--~~--~~~-- 867 (1495)
T PLN03232 798 NQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDAT--Q-EVNTNDENI-LKLGPT--VT--IDV-- 867 (1495)
T ss_pred CChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhccccccc--c-ccccccccc-cccccc--cc--ccc--
Confidence 9999999999999999999999999999998887787776543211000 0 000000000 000000 00 000
Q ss_pred cccCCCCchhhhhhhccchhHHHHHhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCC
Q 039402 880 NNKGQNDKADEVAVSKGQLVQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVK 959 (1496)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~ 959 (1496)
..+.. ....+.+.....+.++|+++.|.+++++|++|+++.++.+++.+++++.++.+++.+++++|+++|++....
T Consensus 868 ~~~~~-~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~-- 944 (1495)
T PLN03232 868 SERNL-GSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTP-- 944 (1495)
T ss_pred ccccc-ccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--
Confidence 00000 000000011123567788999999999999999997766666666666777888899999999999853211
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhh
Q 039402 960 PVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGI 1039 (1496)
Q Consensus 960 ~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l 1039 (1496)
.......|+++|++++++..++.+++.++....+.++++++|++++++++++|++|||++|+|+|+||+++|++.+|..+
T Consensus 945 ~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l 1024 (1495)
T PLN03232 945 KSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNV 1024 (1495)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHH
Confidence 12234678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHH
Q 039402 1040 PSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRS 1119 (1496)
Q Consensus 1040 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRa 1119 (1496)
+..+..++..++.+++.+++++.+++..+++++|+.+++++++.+|.+++|+++|.+..+++|+++|++|+++|+.|||+
T Consensus 1025 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIra 1104 (1495)
T PLN03232 1025 ANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRA 1104 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhc
Confidence 99999999999999998888888888777778888888888899999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHHHH
Q 039402 1120 FDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFI-----DPAIAGLAVTYGLTLN 1194 (1496)
Q Consensus 1120 f~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~g~~-----~~g~~gl~l~y~l~l~ 1194 (1496)
|+++++|.+++.+..|.+.+..+.....++|+.+++++++++++.+.+.+.+.. .+.+ .++.+|++++|+..+.
T Consensus 1105 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~g~~~~~~~~~~ 1183 (1495)
T PLN03232 1105 YKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLR-NGNAENQAGFASTMGLLLSYTLNIT 1183 (1495)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988876555544443322 2322 2567889999999999
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCc
Q 039402 1195 TLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGE 1274 (1496)
Q Consensus 1195 ~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~Ge 1274 (1496)
..+.++++.+.++|+.++|+||+.+|.+.|+|++...+...+++.||.+|.|+|+||+|+|+++.++||+|+||+|+|||
T Consensus 1184 ~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~Ge 1263 (1495)
T PLN03232 1184 TLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSE 1263 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCC
Confidence 99999999999999999999999999999888654333344667899999999999999998887889999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHH
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWE 1354 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~ 1354 (1496)
|||||||||||||||+++|+|+++|++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+|||+
T Consensus 1264 kvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~ 1343 (1495)
T PLN03232 1264 KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWE 1343 (1495)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEE
Q 039402 1355 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTV 1434 (1496)
Q Consensus 1355 aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TV 1434 (1496)
||++|+++|+|+++|+||||+|+|+|.|||||||||+||||||||+|+|||||||||+||++||+.||++|++.+++|||
T Consensus 1344 al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~Tv 1423 (1495)
T PLN03232 1344 ALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTM 1423 (1495)
T ss_pred HHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHhhcc
Q 039402 1435 LTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRS 1486 (1496)
Q Consensus 1435 I~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~~~~ 1486 (1496)
|+||||++|+++||||+|||+|+|+|+|+|+||+++++|.|++|+++.+..+
T Consensus 1424 I~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~~~ 1475 (1495)
T PLN03232 1424 LVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPAN 1475 (1495)
T ss_pred EEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChhh
Confidence 9999999999999999999999999999999999987789999999887643
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-206 Score=2105.05 Aligned_cols=1356 Identities=33% Similarity=0.568 Sum_probs=1148.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHHHHHHHHhhhhhhhhccch-hhhHHHHHHHHHHHHHHHH
Q 039402 99 LLDFGVKTLGWSAICVCLHTVFLNSRQPKLPILLKLWWAFYVFISCYCLIVDIVLCEKQV-SLQIQYLISDVASAMTGLF 177 (1496)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 177 (1496)
...+++..++|+++.+....++.++.+ .+..+.+||++..++.+..+++.......+. ...........+.+.+.++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~e~~~~~~--~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1522)
T TIGR00957 101 LVSPTLLGITMLLATFLIQLERRKGVQ--SSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFALVLS 178 (1522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcccC--CCcchhHHHHHHHHHHHHHHHHHHHHhhcccccccceehhhHHHHHHHHHH
Confidence 344566777777666555455544443 4678999998887776666554431100000 0000000111111111111
Q ss_pred HHHHHHhccccccccccccccCccCCCCCCCCCCCCCCCCCCCCCCCcccCchhHHHHHHhHHHHHHccccCCCCCCCCC
Q 039402 178 LCFVGILSKIEGEDALLLREPLLKADSNETDGTVPSIKSEGADKLTPYSRAGVLSVITYSWINSLIALGNKKTLDLEDVP 257 (1496)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~ 257 (1496)
++ .+... . -..|++.++. .....+||++||++||++|+|+||++++||+++|+.+|||
T Consensus 179 ~~--~~~~~--~-----~~~~~~~~~~-------------~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~ 236 (1522)
T TIGR00957 179 QL--VLSCF--S-----DKSPLFSETN-------------HDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLW 236 (1522)
T ss_pred HH--HHHhh--c-----CCCCcccccc-------------ccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhcc
Confidence 11 11100 0 0123332101 1134579999999999999999999999999999999999
Q ss_pred CCCCCCcHhHHHHHHHHHHhhccCCC-------------------------------------CCCchhhHHHHHHHHhH
Q 039402 258 QLDSGDSVSGAFANFKNKLETEGGVG-------------------------------------SGLTTVKLIKAMFCSVW 300 (1496)
Q Consensus 258 ~l~~~~~~~~~~~~f~~~w~~~~~~~-------------------------------------~~~~~~~l~~al~~~~~ 300 (1496)
+++++++++.++++|++.|+++..+. ++.++++|+++++++||
T Consensus 237 ~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~ 316 (1522)
T TIGR00957 237 SLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFG 316 (1522)
T ss_pred CCCHhHhHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHh
Confidence 99999999999999999998652000 11234789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 301 KDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAALIAM 380 (1496)
Q Consensus 301 ~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~ir~~L~~~ 380 (1496)
+.++..++++++.+++.+++|++++.+++++.++......||.+++++++..++.+++.++|.+...++++++|++|+..
T Consensus 317 ~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~ 396 (1522)
T TIGR00957 317 PYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGA 396 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997654334468888889999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 039402 381 IYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIP 460 (1496)
Q Consensus 381 iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~~~~~~~~~~~ 460 (1496)
||+|+|+++...+++.++|+++|+|++|++++.++..++|.+|..|++++++++++|..+|+++++++++++++++++..
T Consensus 397 iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~ 476 (1522)
T TIGR00957 397 VYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAV 476 (1522)
T ss_pred HHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 461 LGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSV 540 (1496)
Q Consensus 461 ~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~ 540 (1496)
+++..+++++++|+.+|+|++.++|+++|||.||+|+||+.|.+++++.|++|++..++..+...+..+.....|.++.+
T Consensus 477 ~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (1522)
T TIGR00957 477 MAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVAL 556 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888877777788999999
Q ss_pred HHHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCC-CCCCcc
Q 039402 541 ATFGTCILL--NVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPS-GSSETA 617 (1496)
Q Consensus 541 ~~f~~~~~~--~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~-~~~~~~ 617 (1496)
++|++|.+. ++.++++.+|+++++++.++.|+..+|..+..+.++++|++||++|++.++.++...+.... ......
T Consensus 557 ~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~ 636 (1522)
T TIGR00957 557 ITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNS 636 (1522)
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCc
Confidence 999988876 46799999999999999999999999999999999999999999999876654321111111 111236
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcH
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKI 697 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti 697 (1496)
++++|++|+|+. +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++||+|+||++++||
T Consensus 637 i~~~~~~~~~~~-~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti 715 (1522)
T TIGR00957 637 ITVHNATFTWAR-DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSL 715 (1522)
T ss_pred EEEEEeEEEcCC-CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcH
Confidence 999999999963 2457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 039402 698 EDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHT 777 (1496)
Q Consensus 698 ~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~ 777 (1496)
+|||.||.++++++|++++++|++.+|++.+|+||+|.+|++|.+|||||||||+||||+|++||||||||||||||+++
T Consensus 716 ~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~ 795 (1522)
T TIGR00957 716 RENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 795 (1522)
T ss_pred HHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--HHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHHHHHhHHHHhhhCCCCC-
Q 039402 778 GSHLFQEVLL--GLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQALLALGSIEG- 854 (1496)
Q Consensus 778 ~~~i~~~~~~--~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 854 (1496)
++++++.++. +.++++|+|+|||+++.++.||+|++|++|++++.|+++++.+.++.|.++...+..........+.
T Consensus 796 ~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 875 (1522)
T TIGR00957 796 GKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSW 875 (1522)
T ss_pred HHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhccccccccccccc
Confidence 9999998873 4667899999999999999999999999999999999999998777777766433211100000000
Q ss_pred CCC--ccCCCCC--CC--------Cccccccc--hhhhccccCC---CC---chhhhhhhccchhHHHHHhhccchHHHH
Q 039402 855 RPA--SERASGE--NG--------GTVIANRI--VKEVENNKGQ---ND---KADEVAVSKGQLVQEEEREKGKVGFSVY 914 (1496)
Q Consensus 855 ~~~--~~~~~~~--~~--------~~~~~~~~--~~~~~~~~~~---~~---~~~~~~~~~~~~~~~e~~~~g~v~~~~y 914 (1496)
.+. .+..... .. ........ .......... .. +..+......+..++|+++.|+|++++|
T Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y 955 (1522)
T TIGR00957 876 TALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVY 955 (1522)
T ss_pred cccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHH
Confidence 000 0000000 00 00000000 0000000000 00 0000001123456778888999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 915 WKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGY 994 (1496)
Q Consensus 915 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~ 994 (1496)
+.|+++.+. ..+++++++.++.+++.+++++|+++|++......+..+...|+++|++++++..++.+++.++....+.
T Consensus 956 ~~Y~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~ 1034 (1522)
T TIGR00957 956 WDYMKAIGL-FITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGI 1034 (1522)
T ss_pred HHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998753 4444555556777888899999999998632111122234567789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039402 995 KTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPA 1074 (1496)
Q Consensus 995 ~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~ 1074 (1496)
++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|+++++++|+
T Consensus 1035 ~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~ 1114 (1522)
T TIGR00957 1035 QASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPL 1114 (1522)
T ss_pred HHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039402 1075 VGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLR 1154 (1496)
Q Consensus 1075 ~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~r 1154 (1496)
++++++++++|.+++|+++|++..+++|+++|+.|+++|+.|||+|+++++|.+++.+..|.++++.+.....++|++.+
T Consensus 1115 ~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1194 (1522)
T TIGR00957 1115 GLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVR 1194 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCC
Q 039402 1155 LDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEES 1234 (1496)
Q Consensus 1155 l~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~ 1234 (1496)
+++++.+++.++..+.+ ...+.+++|.+|++++|++.+...+.++++.++++|+.++|+||+.+|.+.|+|++...+..
T Consensus 1195 ~~~~~~~~~~~~~~~~v-~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~ 1273 (1522)
T TIGR00957 1195 LECVGNCIVLFAALFAV-ISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQET 1273 (1522)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCC
Confidence 99998765554444433 33577899999999999999999999999999999999999999999999888865433444
Q ss_pred CCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC
Q 039402 1235 RPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI 1314 (1496)
Q Consensus 1235 ~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i 1314 (1496)
.+++.||.+|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++|++|+|+|||+||+++
T Consensus 1274 ~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i 1353 (1522)
T TIGR00957 1274 APPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKI 1353 (1522)
T ss_pred CCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEcccc
Confidence 56778999999999999999998777899999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1315 GLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1315 ~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
++++||++|++|||||+||+||||+||||+++++|+|||+||++|+++++|.++|+||||+|+|+|.|||||||||+|||
T Consensus 1354 ~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LA 1433 (1522)
T TIGR00957 1354 GLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLA 1433 (1522)
T ss_pred CHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcH
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSS 1474 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~ 1474 (1496)
|||||+|+|||||||||+||.+||+.||++|++.|++||||+||||++|+++||||+|||+|+|+|+|+|++|+++ +|.
T Consensus 1434 RALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~ 1512 (1522)
T TIGR00957 1434 RALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGI 1512 (1522)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 699
Q ss_pred HHHHHHHH
Q 039402 1475 FSQLVAEY 1482 (1496)
Q Consensus 1475 F~~l~~~~ 1482 (1496)
|++|+++.
T Consensus 1513 f~~l~~~~ 1520 (1522)
T TIGR00957 1513 FYSMAKDA 1520 (1522)
T ss_pred HHHHHHHc
Confidence 99999884
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-198 Score=2019.53 Aligned_cols=1251 Identities=28% Similarity=0.466 Sum_probs=1093.0
Q ss_pred CCCcccCchhHHHHHHhHHHHHHccccCCCCCCCCCCCCCCCcHhHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhHH
Q 039402 222 LTPYSRAGVLSVITYSWINSLIALGNKKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGVGSGLTTVKLIKAMFCSVWK 301 (1496)
Q Consensus 222 ~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~~l~~al~~~~~~ 301 (1496)
.+||++||+|||++|+|+||++++||+++|+.+|||+|+++++++.++++|++.|+++.. ++.++++|+++++++|++
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~L~~~l~~~~~~ 80 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELA--SAKKNPKLLNALRRCFFW 80 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHh--ccCCCChHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999987541 123457899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 302 DVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDF-ENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAALIAM 380 (1496)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~-~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~ir~~L~~~ 380 (1496)
.++..+++.++.+++.+++|++++.+++|++..+.. ...+|.++++++++.++.+++.++++|...++++++|++|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~ 160 (1490)
T TIGR01271 81 RFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSL 160 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999543222 2358888999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 039402 381 IYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIP 460 (1496)
Q Consensus 381 iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~~~~~~~~~~~ 460 (1496)
||+|+|+++....++.++|+++|+|++|++++.+++.++|.+|..|+++++++++||.++|+++++++++++++++++.+
T Consensus 161 iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~ 240 (1490)
T TIGR01271 161 IYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQAC 240 (1490)
T ss_pred HHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 461 LGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSV 540 (1496)
Q Consensus 461 ~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~ 540 (1496)
+++...++++++|+++|+|++.++|+++|||+||+|+||+.|.+++++.|++|++..++..+...+..++++..|.++++
T Consensus 241 ~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1490)
T TIGR01271 241 LGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVF 320 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888888888889999999
Q ss_pred HHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCccEE
Q 039402 541 ATFGTCILLNVPLESGKMLSAIATFRLLQVPIY-NLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALD 619 (1496)
Q Consensus 541 ~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~-~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~ 619 (1496)
++|++|.+.++ ++++.+|+++++|++++.|+. .+|..+..+.++.+|++||++||..+|.++.... .....++
T Consensus 321 ~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~-----~~~~~i~ 394 (1490)
T TIGR01271 321 LSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYN-----LTTTEVE 394 (1490)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc-----CCCCceE
Confidence 99999988754 789999999999999999985 7999999999999999999999988765432111 1123589
Q ss_pred EEeeEEEecCC-------------------------------CCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhc
Q 039402 620 IVDGNFSWDIS-------------------------------SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 620 ~~~~~~~~~~~-------------------------------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG 668 (1496)
++|++|+|+.. ..+++|+|+||+|++|++++|+|||||||||||++|+|
T Consensus 395 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G 474 (1490)
T TIGR01271 395 MVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG 474 (1490)
T ss_pred EecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 99999999531 01468999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 669 EVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 669 ~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
+++|++|+|.++|+++||+|+||++++||+|||+||.++++++|++++++|+|.+|++.+|.||+|.+|++|.+||||||
T Consensus 475 ~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqk 554 (1490)
T TIGR01271 475 ELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQR 554 (1490)
T ss_pred CCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l 828 (1496)
|||+||||+|++|+||||||||||||+++++++++.|+.+.++++|+|+|||+++.++.||+|++|++|++++.|+++++
T Consensus 555 qRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 555 ARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999888877789999999999999989999999999999999999999
Q ss_pred HhcCcchHHHHHHhHHHHh---h--------------hC--------CCCC-----CCCcc--CC---C-----------
Q 039402 829 INSGTDFMELVGAHEQALL---A--------------LG--------SIEG-----RPASE--RA---S----------- 862 (1496)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~---~--------------~~--------~~~~-----~~~~~--~~---~----------- 862 (1496)
.+.+..+.+.........+ . .+ +.+. .+... .. .
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1490)
T TIGR01271 635 QAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARK 714 (1490)
T ss_pred HhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8776666555431100000 0 00 0000 00000 00 0
Q ss_pred ---------C----CCCCcc--cc------------------ccch-------------------hhh---ccccCC---
Q 039402 863 ---------G----ENGGTV--IA------------------NRIV-------------------KEV---ENNKGQ--- 884 (1496)
Q Consensus 863 ---------~----~~~~~~--~~------------------~~~~-------------------~~~---~~~~~~--- 884 (1496)
. ..+... .. .... ... ....+.
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1490)
T TIGR01271 715 FSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQT 794 (1490)
T ss_pred cccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 0 000000 00 0000 000 000000
Q ss_pred -C-----------------------Cch------h--hhhhhccchhHHHHHhhccchHHHHHHHHHHhhhhhHHHHHHH
Q 039402 885 -N-----------------------DKA------D--EVAVSKGQLVQEEEREKGKVGFSVYWKYITTAFGGALVPFILL 932 (1496)
Q Consensus 885 -~-----------------------~~~------~--~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~ 932 (1496)
. .++ . +.+.....+.++|+++.|.++|++|++|+++.+++.++.++++
T Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~ 874 (1490)
T TIGR01271 795 SFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCL 874 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHH
Confidence 0 000 0 0000112346678889999999999999998766555555566
Q ss_pred HHHHHHHHHHHhhhHHHhhcCCC------CCC---C-----Cc--c-cchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 933 AQTLFQILQIASNYWIVWATPGT------KDV---K-----PV--V-TGSTL-LIVYVALAVGSSFCVLARSTLLATAGY 994 (1496)
Q Consensus 933 ~~~~~~~~~~~~~~wl~~~~~~~------~~~---~-----~~--~-~~~~~-l~vy~~l~~~~~~~~~~~~~~~~~~~~ 994 (1496)
+.++++++..+.++|+.+|.... ... . |. . ...+| +++|++++++..++.+++.+++...+.
T Consensus 875 ~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1490)
T TIGR01271 875 VIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLL 954 (1490)
T ss_pred HHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778899999999998775311 000 0 00 0 11223 556666666677788889999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039402 995 KTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPA 1074 (1496)
Q Consensus 995 ~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~ 1074 (1496)
++++.+|.+++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|+++++++|+
T Consensus 955 ~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l 1034 (1490)
T TIGR01271 955 TVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPV 1034 (1490)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039402 1075 VGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLR 1154 (1496)
Q Consensus 1075 ~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~r 1154 (1496)
++++++++++|.+++|+++|++..+++|+++||.|+++|+.|||+|+++++|.+++.+..|.+++.++.....++|+..+
T Consensus 1035 ~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~ 1114 (1490)
T TIGR01271 1035 AVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMR 1114 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCcc--
Q 039402 1155 LDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIE-- 1232 (1496)
Q Consensus 1155 l~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~-- 1232 (1496)
+++++.+.+...+++.+. ...+++|.+|++++|++.+...+.++++.++++|+.+.|+||+.+|.+.|+|++...+
T Consensus 1115 ~~~i~~~~~~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~ 1192 (1490)
T TIGR01271 1115 IDIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGG 1192 (1490)
T ss_pred HHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc
Confidence 999877654443333222 2245778899999999999999999999999999999999999999998887542211
Q ss_pred ------------CCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCC
Q 039402 1233 ------------ESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA 1300 (1496)
Q Consensus 1233 ------------~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~ 1300 (1496)
...+|+.||..|.|+|+||+++|+++.++||+||||+|+||||||||||||||||||+++|+|+++ +
T Consensus 1193 ~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~ 1271 (1490)
T TIGR01271 1193 GKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T 1271 (1490)
T ss_pred cccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C
Confidence 123456799999999999999999888899999999999999999999999999999999999998 7
Q ss_pred ccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCC
Q 039402 1301 AGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380 (1496)
Q Consensus 1301 ~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1380 (1496)
+|+|+|||+||++++++++|++|++|||||+||+||||+||||+++++|++||+||++|+++++|.++|+||||+|+|+|
T Consensus 1272 ~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G 1351 (1490)
T TIGR01271 1272 EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351 (1490)
T ss_pred CcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeE
Q 039402 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEE 1460 (1496)
Q Consensus 1381 ~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE 1460 (1496)
.||||||||||||||||||+|+|||||||||+||.+||+.||++|++.|++||||+||||++|+.+||||+|||+|+|+|
T Consensus 1352 ~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhhHhhcCCcHHHHHHHHHhh
Q 039402 1461 FDNPANLLENKSSSFSQLVAEYTL 1484 (1496)
Q Consensus 1461 ~g~p~~Ll~~~~s~F~~l~~~~~~ 1484 (1496)
+|+|++|++ ++|.|++|++++..
T Consensus 1432 ~g~p~~Ll~-~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1432 YDSIQKLLN-ETSLFKQAMSAADR 1454 (1490)
T ss_pred eCCHHHHHc-CCcHHHHHHHHhCh
Confidence 999999996 58999999998774
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-189 Score=1928.40 Aligned_cols=1259 Identities=30% Similarity=0.479 Sum_probs=1085.4
Q ss_pred CCCCCcccCchhHHHHHHhHHHHHHccccCCCCCCCCCCCCCCCcHhHHHHHHHHH----------HhhccC--------
Q 039402 220 DKLTPYSRAGVLSVITYSWINSLIALGNKKTLDLEDVPQLDSGDSVSGAFANFKNK----------LETEGG-------- 281 (1496)
Q Consensus 220 ~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~----------w~~~~~-------- 281 (1496)
..+.||+++|||.++++.|++|++.+..|..|+.+|+|+...+.++-++..++.+. |+...+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1560)
T PTZ00243 57 YTPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLD 136 (1560)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecc
Confidence 45678999999999999999999999999999999999999999886665555443 321000
Q ss_pred --------------C-----------------------------------------------------------------
Q 039402 282 --------------V----------------------------------------------------------------- 282 (1496)
Q Consensus 282 --------------~----------------------------------------------------------------- 282 (1496)
+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1560)
T PTZ00243 137 ASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSS 216 (1560)
T ss_pred ccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecc
Confidence 0
Q ss_pred ---------CCCCchhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHH
Q 039402 283 ---------GSGLTTVKLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKL 353 (1496)
Q Consensus 283 ---------~~~~~~~~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~ 353 (1496)
...++..+|+++++++||+.++..++++++.+++.+++|++++.+++++++++.....|++++++++++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~ 296 (1560)
T PTZ00243 217 TGSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQL 296 (1560)
T ss_pred cccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Confidence 00123357999999999999999999999999999999999999999997654323357788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhc--CCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039402 354 VECLCQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQ--GQSSGEIINFMTVDAERVADFSWYIHDPWLVLFEVAL 431 (1496)
Q Consensus 354 ~~~l~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~ls~~~~~--~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~~ 431 (1496)
+++++.+++++...+.+.++|++|+..+|+|+++++..+.. +.++|+++|+|++|++++.+++.++|.+|..|+++++
T Consensus 297 ~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~ 376 (1560)
T PTZ00243 297 IQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLL 376 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987665 5689999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHH
Q 039402 432 SILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRK 511 (1496)
Q Consensus 432 ~~~lL~~~lg~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~ 511 (1496)
++++||..+|+++++|+++++++++++.++++++.++++++|+++|+|++.++|++++||+||++|||+.|.++|++.|+
T Consensus 377 ~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~ 456 (1560)
T PTZ00243 377 SILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRA 456 (1560)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 512 RETGWLKKYVYTSAISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQR 591 (1496)
Q Consensus 512 ~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~R 591 (1496)
+|++.+++..+...+..++.+.+|.++.+++|++|.+.|++||++.+|+++++|++++.|+..+|..++.+.++++|++|
T Consensus 457 ~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~R 536 (1560)
T PTZ00243 457 RELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKR 536 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCccc----c------------C-----------------CC-------------------------CCC
Q 039402 592 IASFFCLDDLQPDLV----E------------K-----------------QP-------------------------SGS 613 (1496)
Q Consensus 592 i~~fL~~~e~~~~~~----~------------~-----------------~~-------------------------~~~ 613 (1496)
|++||..+|...... + . .+ ...
T Consensus 537 I~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1560)
T PTZ00243 537 ISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRH 616 (1560)
T ss_pred HHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence 999998766311000 0 0 00 000
Q ss_pred CCccEEEEeeEEEecC-------------------------------------CCCCCceeeeeEEEeCCcEEEEEecCC
Q 039402 614 SETALDIVDGNFSWDI-------------------------------------SSHNPTLKDINLKVFHGMRVAVCGTVG 656 (1496)
Q Consensus 614 ~~~~i~~~~~~~~~~~-------------------------------------~~~~~~L~~i~l~i~~G~~~~ivG~~G 656 (1496)
....+.++|++++|+. .+++++|+|+||+|++|++++|+||||
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nG 696 (1560)
T PTZ00243 617 PSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATG 696 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCC
Confidence 0123556666665421 013568999999999999999999999
Q ss_pred CcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccc
Q 039402 657 SGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVI 736 (1496)
Q Consensus 657 sGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~i 736 (1496)
||||||+++|+|+++|++|+|.++++++||+|+||++++||+|||.|+.++++++|++++++|++++|++.+|+|++|.+
T Consensus 697 sGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 697 SGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred CcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 99999999999999999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeC
Q 039402 737 GERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKD 816 (1496)
Q Consensus 737 g~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 816 (1496)
|++|.+|||||||||+||||+|++|++||||||||+||++++++++++++.+.++|+|+|+|||+++.++.||+|++|++
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999888777789999999999999999999999999
Q ss_pred CeEEEecChHHHHhcCcchHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccC-CCCchhhhhhhc
Q 039402 817 GKITQAGKYNDLINSGTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKG-QNDKADEVAVSK 895 (1496)
Q Consensus 817 G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 895 (1496)
|+++++|+++++++.+ .+.++........+. .+.....+.......+................ ...+........
T Consensus 857 G~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1560)
T PTZ00243 857 GRVEFSGSSADFMRTS-LYATLAAELKENKDS---KEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAA 932 (1560)
T ss_pred CEEEEecCHHHHHhCh-HHHHHHHhhcccccc---ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999998653 354443321110000 00000000000000000000000000000000 000000001122
Q ss_pred cchhHHHHHhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHH
Q 039402 896 GQLVQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALA 975 (1496)
Q Consensus 896 ~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~ 975 (1496)
.++.++|+++.|.++|++|++|++..++..++.+++++.++.+++..++++|+++|++.. ...+...|+.+|+++.
T Consensus 933 ~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~----~~~~~~~~l~~y~~~~ 1008 (1560)
T PTZ00243 933 GRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRS----FKLSAATYLYVYLGIV 1008 (1560)
T ss_pred chhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cCCCcccHHHHHHHHH
Confidence 356677888899999999999999877666555555566677888899999999887532 1223456788999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHH
Q 039402 976 VGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILG 1055 (1496)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~ 1055 (1496)
++..++.+++.+.....+.++++.+|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++
T Consensus 1009 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~ 1088 (1560)
T PTZ00243 1009 LLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICS 1088 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHH
Q 039402 1056 TIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMD 1135 (1496)
Q Consensus 1056 ~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d 1135 (1496)
.++++++..|.++++++|+.+++++++++|.+..|+++|++..+++|++++++|+++|+.|||+|+++++|.+++.+..|
T Consensus 1089 ~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d 1168 (1560)
T PTZ00243 1089 SILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLD 1168 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHH
Confidence 99999999998888888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 039402 1136 EYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLI---SIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKII 1212 (1496)
Q Consensus 1136 ~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~---~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~ 1212 (1496)
.+.+..+.....++|+..++++++.+++++.+++.+ ....+.+++|.++++++|+..+...+.++++.+.++|+.|+
T Consensus 1169 ~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~ 1248 (1560)
T PTZ00243 1169 VVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMN 1248 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998776544433322 22345578999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCCCCCCCc-----------------------cCCCCC---CCCCCcceEEEEeEEeEeCCCCCcccee
Q 039402 1213 SVERIFQYTC-IPSEPPLAI-----------------------EESRPN---DSWPSHGKIDLLDLQVRYAPQMPLVLQG 1265 (1496)
Q Consensus 1213 sveRi~~~~~-~~~E~~~~~-----------------------~~~~~~---~~wp~~g~I~f~nvs~~Y~~~~~~vLk~ 1265 (1496)
|+||+.+|.+ .|+|+.... +...++ +.||..|.|+|+||+|+|+++.|+||+|
T Consensus 1249 s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~ 1328 (1560)
T PTZ00243 1249 SVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRG 1328 (1560)
T ss_pred HHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeec
Confidence 9999999996 444421100 011122 2356779999999999999888889999
Q ss_pred eeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC
Q 039402 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE 1345 (1496)
Q Consensus 1266 iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~ 1345 (1496)
|||+|+||||||||||||||||||+++|+|+++|++|+|+|||+||+++++++||++|++|||||+||+||||+||||++
T Consensus 1329 vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~ 1408 (1560)
T PTZ00243 1329 VSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL 1408 (1560)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccC-CCEEEEEcCCCCCCHHHHHHHHHH
Q 039402 1346 ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR-SKILMLDEATASVDTATDNLIQQT 1424 (1496)
Q Consensus 1346 ~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~-~~ILiLDEaTsslD~~Td~~Iq~~ 1424 (1496)
+++|+|||+||++|+++++|.++|+||||.|+|+|.||||||||||||||||||+ |+|||||||||+||++||+.||++
T Consensus 1409 ~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~ 1488 (1560)
T PTZ00243 1409 EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488 (1560)
T ss_pred CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999996 899999999999999999999999
Q ss_pred HHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHhhcc
Q 039402 1425 LRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRS 1486 (1496)
Q Consensus 1425 I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~~~~ 1486 (1496)
|++.|++||||+||||++|+.+||+|+|||+|+|+|+|+|++|+++++|.|++|+++.+...
T Consensus 1489 L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~~~ 1550 (1560)
T PTZ00243 1489 VMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSE 1550 (1560)
T ss_pred HHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChhH
Confidence 99999999999999999999999999999999999999999999888899999998876543
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-145 Score=1372.65 Aligned_cols=1162 Identities=21% Similarity=0.262 Sum_probs=858.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCC--Ccc----hhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 039402 297 CSVWKDVLVTGFLTVLYTLASYVGPYL---IDTFVQYLNGRR--DFE----NEGYVLVSAFCVAKLVECLC-QRFRVFRL 366 (1496)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~~~P~l---l~~~i~~~~~~~--~~~----~~g~~l~~~l~~~~~~~~l~-~~~~~~~~ 366 (1496)
.+-+.++++..+-.+...+....+|++ ...+.+.+.... ... ..++.+. .+.+..++.+++ ...|.+..
T Consensus 21 ~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~-~lg~~~~~~~~~q~~c~~~~g 99 (1228)
T KOG0055|consen 21 FADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFV-YLGVGVFISGFIQVSCWMRTG 99 (1228)
T ss_pred ccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666666666677754 355555554322 101 1122111 122222223332 34566666
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039402 367 QQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWY-IHDPWLVLFEVALSILILYKNLGIASL 445 (1496)
Q Consensus 367 ~~~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~~~lL~~~lg~~~l 445 (1496)
.|...|+|... .+..||.....++.+.+|++.+.|+.|++++++.+.. +..+....-.++.++++.+..-...++
T Consensus 100 eRq~~riR~~y----l~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Ltl 175 (1228)
T KOG0055|consen 100 ERQTARIRSKY----LKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTL 175 (1228)
T ss_pred HHHHHHHHHHH----HHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555 5566667778888888899999999999999997532 222222222233333333333334556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 446 AALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSA 525 (1496)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~ 525 (1496)
+++...+++......+++.+.+...+.+++..+--....|.+.+||++-.|+-|+...++..+.-+.-.+.-.+......
T Consensus 176 v~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G 255 (1228)
T KOG0055|consen 176 VMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKG 255 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777778888888888888888888888999999999999999999998888775543333333322222222
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-C
Q 039402 526 ISSFV--FWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDL-Q 602 (1496)
Q Consensus 526 ~~~~~--~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~-~ 602 (1496)
+...+ ++........++||..++..+..++|.+++++...-+-...+......+..+..|+++..+|.+.++..+. +
T Consensus 256 ~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~ 335 (1228)
T KOG0055|consen 256 LGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSID 335 (1228)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCC
Confidence 22222 22223344556777777777889999999887666666677888888999999999999999998865432 2
Q ss_pred CccccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe
Q 039402 603 PDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 682 (1496)
Q Consensus 603 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~ 682 (1496)
+..............++++|++|+|+..++.++|+|+||+|++|+.+|+||||||||||++++|.|+|+|++|+|.++|.
T Consensus 336 ~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~ 415 (1228)
T KOG0055|consen 336 PYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGE 415 (1228)
T ss_pred cccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCc
Confidence 22111112223456899999999999877789999999999999999999999999999999999999999999999984
Q ss_pred -------------eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 -------------KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 -------------~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
+|.|.|+|-+|++||+|||.||+| .++++..++.+....++.+..+|+|++|.+||+|.+||||||
T Consensus 416 di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQK 495 (1228)
T KOG0055|consen 416 DIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQK 495 (1228)
T ss_pred cchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHH
Confidence 599999999999999999999995 678888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l 828 (1496)
|||||||||.+||+||||||||||||++.++. .+++++...+|+|.|+|+||++.++.||+|++|++|+|++.|+|+||
T Consensus 496 QRIAIARalv~~P~ILLLDEaTSaLD~~se~~-Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~EL 574 (1228)
T KOG0055|consen 496 QRIAIARALVRNPKILLLDEATSALDAESERV-VQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDEL 574 (1228)
T ss_pred HHHHHHHHHHhCCCEEEecCcccccCHHHHHH-HHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999998654 47889999999999999999999999999999999999999999999
Q ss_pred HhcCcchHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccchhHHHHHhhcc
Q 039402 829 INSGTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEEREKGK 908 (1496)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~ 908 (1496)
++.++.|.+++..++......+..++.+..+...... ..+.......+............+.+...... .+++ -.
T Consensus 575 i~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~-~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~---~~ 649 (1228)
T KOG0055|consen 575 IALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSL-KSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPV-SEED---EK 649 (1228)
T ss_pred HhccchHHHHHHHHhhhhhhhccccccchhhhhhhcc-ccccccccccCCcccccccccccccccccccc-cccc---cc
Confidence 9999999999988765432221000000000000000 00000000000000000000000000000000 1111 12
Q ss_pred chHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCC---cccchHHHHHHHHHHHHHHHHHHH
Q 039402 909 VGFSVYWKYITTAFG-GALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKP---VVTGSTLLIVYVALAVGSSFCVLA 984 (1496)
Q Consensus 909 v~~~~y~~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~---~~~~~~~l~vy~~l~~~~~~~~~~ 984 (1496)
++ +++-++.+.+ |.+..+-.++.++..+..-...+.+++........++ ......|..+|+++++++.++.++
T Consensus 650 ~s---~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~ 726 (1228)
T KOG0055|consen 650 VS---FWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFL 726 (1228)
T ss_pred cc---HHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 3444443333 2222222222222222221112222211110000111 112334889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--cCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039402 985 RSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDA--TPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQ 1062 (1496)
Q Consensus 985 ~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~--tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~ 1062 (1496)
..+++.+.|.+..++++.++++++++.++.|||. +. |+|.+|+.+|...+...+...+..++.++..++..+++.++
T Consensus 727 q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~ 805 (1228)
T KOG0055|consen 727 QHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFI 805 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999995 45 99999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHh
Q 039402 1063 VAWQVFIVFV---PAVGSCIWYQQYYISS-ARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYS 1138 (1496)
Q Consensus 1063 ~~~~~~~~~i---p~~~l~~~~~~~y~~~-~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~ 1138 (1496)
++|.+.++.+ |++++..+++.+++.. .++.+. ..........|++..++||++|+.|++|.+.+.+.++.-.
T Consensus 806 ~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~----~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~ 881 (1228)
T KOG0055|consen 806 YGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKK----AYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPR 881 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999987654 5555555555554443 333332 2333446788999999999999999999999999888776
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 039402 1139 RPTFHIAAAMEWLGLRLDMLSSITFAFTLVF----LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISV 1214 (1496)
Q Consensus 1139 ~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~----~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sv 1214 (1496)
+..+.. ..|-++...+-.+++++.-++. ..+...|..++..+-.++.-...-...+.......-++-+...|+
T Consensus 882 ~~~~~~---~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa 958 (1228)
T KOG0055|consen 882 KSSFKR---GLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAA 958 (1228)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 665543 2355555555444444332222 234457777776654444333333334455556667788889999
Q ss_pred HHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCC-CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHH
Q 039402 1215 ERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQM-PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTL 1293 (1496)
Q Consensus 1215 eRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L 1293 (1496)
.++.+.++-+++-+...+.. ....+.+|+|+|+||+|+|+... .+||+|+|++|++||.+|+||+|||||||++.+|
T Consensus 959 ~~iF~i~dr~~~i~~~~~~~--~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LL 1036 (1228)
T KOG0055|consen 959 GSIFEILDRKPTIDPDSTSG--GKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLL 1036 (1228)
T ss_pred HHHHHHhcCCCCCCCCCCCC--CccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 99999988665322111111 11113689999999999996332 2699999999999999999999999999999999
Q ss_pred hcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhccCCc
Q 039402 1294 FRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEGKL 1372 (1496)
Q Consensus 1294 ~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gL 1372 (1496)
-|+|+|++|.|.|||.||++++++.||++|++|.|||+||++||||||... .+.+.+||.+|++.++.++||.++|+||
T Consensus 1037 eRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~Gy 1116 (1228)
T KOG0055|consen 1037 ERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGY 1116 (1228)
T ss_pred HHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcc
Confidence 999999999999999999999999999999999999999999999999987 4579999999999999999999999999
Q ss_pred ccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEE
Q 039402 1373 DSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLL 1452 (1496)
Q Consensus 1373 dt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlV 1452 (1496)
||.|||+|.+||||||||+|||||++||||||+||||||+||.++|+.+|++|.+...++|.|+|||||+||++||.|.|
T Consensus 1117 DT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~V 1196 (1228)
T KOG0055|consen 1117 DTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAV 1196 (1228)
T ss_pred cCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeEeEecChhhHhhcCCcHHHHHHHHHh
Q 039402 1453 LNHGLIEEFDNPANLLENKSSSFSQLVAEYT 1483 (1496)
Q Consensus 1453 L~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~ 1483 (1496)
+++|+|+|.|+|++|++ ++|.|++|++...
T Consensus 1197 i~~G~VvE~GtH~~L~~-~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1197 LKNGKVVEQGTHDELLA-KRGIYFRLVQLQS 1226 (1228)
T ss_pred EECCEEEecccHHHHHh-CCCchHHHhhhcc
Confidence 99999999999999997 6899999998653
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-136 Score=1394.09 Aligned_cols=1185 Identities=17% Similarity=0.189 Sum_probs=868.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 290 KLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQL 369 (1496)
Q Consensus 290 ~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 369 (1496)
.+++...+.+++.++++.++.++..++..+.|++++.+++.+..... ...+++.+++..++..++...+.+...++
T Consensus 49 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 124 (1466)
T PTZ00265 49 LPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN----VNDIIFSLVLIGIFQFILSFISSFCMDVV 124 (1466)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555677778888888899999999999999999987642211 11222333344455556666777778888
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 039402 370 GIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFS-WYIHDPWLVLFEVALSILILYKNLGIASLAAL 448 (1496)
Q Consensus 370 ~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l 448 (1496)
+.++...++..+|+|.++++...+++.+.|++.+.++.|++.+.+.+ ..+..+...++.++.++++++..-...+++.+
T Consensus 125 ~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l 204 (1466)
T PTZ00265 125 TTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCIT 204 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999865 34555555566666666555544443445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 449 FGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISS 528 (1496)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~ 528 (1496)
+++++++.+...+.+..++..++..+..++..+.+.|.++|||+||.|+.|+.+.+++.+..+...+...+.....++..
T Consensus 205 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~ 284 (1466)
T PTZ00265 205 CVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHI 284 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666667778888888888888889999999999999999999999999999987655544444444333333322
Q ss_pred HHHHHH--HHHHHHHHHHHHHHhcC--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 039402 529 FVFWGA--PTFVSVATFGTCILLNV--------PLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCL 598 (1496)
Q Consensus 529 ~~~~~~--p~~v~~~~f~~~~~~~~--------~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~ 598 (1496)
.+.... -..+.++++|.+.+..+ .++++.+++++....+...++..+...+..+..+.+|.+||.+.++.
T Consensus 285 ~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~ 364 (1466)
T PTZ00265 285 GMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINR 364 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 222211 22344556777776653 57888888776554444455556666789999999999999999976
Q ss_pred CCCCCccccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEE
Q 039402 599 DDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK 678 (1496)
Q Consensus 599 ~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~ 678 (1496)
++..+......... ....++++|++|+|+...+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus 365 ~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 443 (1466)
T PTZ00265 365 KPLVENNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII 443 (1466)
T ss_pred CCCCCCCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEE
Confidence 54322111111111 12369999999999744345799999999999999999999999999999999999999999999
Q ss_pred Ec-C-------------eeEEEccCCccCCCcHHHHhccCCC--------------------------------------
Q 039402 679 LC-G-------------TKAYVAQSPWIQSGKIEDNILFGKE-------------------------------------- 706 (1496)
Q Consensus 679 ~~-g-------------~~~yv~Q~~~i~~~ti~eNI~~g~~-------------------------------------- 706 (1496)
++ | .++||+|+|.+|++||+|||.+|..
T Consensus 444 i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1466)
T PTZ00265 444 INDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLN 523 (1466)
T ss_pred EeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhh
Confidence 95 4 2599999999999999999999741
Q ss_pred --------------------CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 039402 707 --------------------MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLF 766 (1496)
Q Consensus 707 --------------------~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illL 766 (1496)
.++++..++++.+++++++..+|+|++|.+|++|.+|||||||||+||||++++|+||||
T Consensus 524 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlL 603 (1466)
T PTZ00265 524 DMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILIL 603 (1466)
T ss_pred hcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 234567778888999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHh--CCcEEEEEccCcCccccCCEEEEEeCC---------------------------
Q 039402 767 DDPFSAVDAHTGSHLFQEVLLGLL--SSKTVIYVTHQVEFLPAADLILVMKDG--------------------------- 817 (1496)
Q Consensus 767 Dep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~d~i~~l~~G--------------------------- 817 (1496)
|||||+||++++..+.+ .+.... +|+|+|+|||+++.+..||+|++|++|
T Consensus 604 DEpTSaLD~~se~~i~~-~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1466)
T PTZ00265 604 DEATSSLDNKSEYLVQK-TINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNN 682 (1466)
T ss_pred eCcccccCHHHHHHHHH-HHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccc
Confidence 99999999999888864 455543 489999999999999889999999986
Q ss_pred --------------------eEEEecChHHHHh-cCcchHHHHHHhHHHHhhhC-C-CCCCCCccCCCCCCCC-c----c
Q 039402 818 --------------------KITQAGKYNDLIN-SGTDFMELVGAHEQALLALG-S-IEGRPASERASGENGG-T----V 869 (1496)
Q Consensus 818 --------------------~i~~~G~~~~l~~-~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~-~----~ 869 (1496)
+|+++|+|+|+++ .++.|..++..+........ . .+.....+........ . .
T Consensus 683 ~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1466)
T PTZ00265 683 KDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDE 762 (1466)
T ss_pred cccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccccccccccc
Confidence 5999999999997 57888888865432211100 0 0000000000000000 0 0
Q ss_pred ccccchhhhcccc-CCCC-c--hh-hhhhhccchhHHHHH----hhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 039402 870 IANRIVKEVENNK-GQND-K--AD-EVAVSKGQLVQEEER----EKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQIL 940 (1496)
Q Consensus 870 ~~~~~~~~~~~~~-~~~~-~--~~-~~~~~~~~~~~~e~~----~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~ 940 (1496)
.......+..... .... . +. .+.....+....+++ ......+..+++++.......+ +.+++.++..++
T Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 840 (1466)
T PTZ00265 763 MNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVT--IIALSILVAGGL 840 (1466)
T ss_pred ccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 0000000000000 0000 0 00 000000000000000 0011123333444433222211 111122222333
Q ss_pred HHHhhhHHHhhcCCC-CCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc-
Q 039402 941 QIASNYWIVWATPGT-KDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDA- 1018 (1496)
Q Consensus 941 ~~~~~~wl~~~~~~~-~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~- 1018 (1496)
....++.++.+.+.. ...........+.+++++++++..++.+++.++....+.+...+++.++++++++.|++|||.
T Consensus 841 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~ 920 (1466)
T PTZ00265 841 YPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQD 920 (1466)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC
Confidence 333333333222100 000001123356667777888888899999999999999999999999999999999999996
Q ss_pred -cCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 039402 1019 -TPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYIS--SARELSRL 1095 (1496)
Q Consensus 1019 -tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~--~~r~l~rl 1095 (1496)
+++|++++|+++|++.+...+...+..++..++.+++.++++++.+|.++++++|++++.........+ ..++.++.
T Consensus 921 ~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1000 (1466)
T PTZ00265 921 KHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKK 1000 (1466)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 889999999999999999999988999999999999999999999998887776655443322221111 11222111
Q ss_pred -------------HHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1096 -------------VGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSIT 1162 (1496)
Q Consensus 1096 -------------~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~ 1162 (1496)
+....+.....+.|++.|+.|||+|+.|+++.+++.+..+...+..........++....+.+..+.
T Consensus 1001 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1466)
T PTZ00265 1001 EINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFI 1080 (1466)
T ss_pred hccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223455678999999999999999999999999999988877766555444443333333333333
Q ss_pred HHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCC-CCCC
Q 039402 1163 FAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRP-NDSW 1240 (1496)
Q Consensus 1163 ~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~-~~~w 1240 (1496)
.+++.++ ...+..|.++.|.+..++.+.+.....+..+...+.++++...+.+|+.++++.+++.+...+...+ +...
T Consensus 1081 ~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~ 1160 (1466)
T PTZ00265 1081 NSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKN 1160 (1466)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCC
Confidence 2222222 2334578888887666555544444456667788889999999999999999876543211111111 0112
Q ss_pred CCcceEEEEeEEeEeCCC-CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC--------------------
Q 039402 1241 PSHGKIDLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-------------------- 1299 (1496)
Q Consensus 1241 p~~g~I~f~nvs~~Y~~~-~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-------------------- 1299 (1496)
+..|.|+|+||+|+|+++ ..+||+|+||+|+|||++||||+||||||||+++|.|+|+|
T Consensus 1161 ~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1161 DIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred CCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccc
Confidence 346899999999999743 23699999999999999999999999999999999999999
Q ss_pred ----------------------------------CccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCC-
Q 039402 1300 ----------------------------------AAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL- 1344 (1496)
Q Consensus 1300 ----------------------------------~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~- 1344 (1496)
++|+|+|||+||+++++++||++|+||||||+||+|||||||...
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGK 1320 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCC
Confidence 699999999999999999999999999999999999999999876
Q ss_pred CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHH
Q 039402 1345 EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424 (1496)
Q Consensus 1345 ~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~ 1424 (1496)
++++|+||++|++.++++|+|.++|+||||.|||+|.+|||||||||||||||||+|+|||||||||+||++||+.|+++
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCcEEEEEccCcchhcccCEEEEEeC----CeE-eEecChhhHhhcCCcHHHHHHHHH
Q 039402 1425 LRQHF--SDCTVLTIAHRITSVIDSDLVLLLNH----GLI-EEFDNPANLLENKSSSFSQLVAEY 1482 (1496)
Q Consensus 1425 I~~~f--~~~TVI~IAHRl~ti~~~DrIlVL~~----G~I-vE~g~p~~Ll~~~~s~F~~l~~~~ 1482 (1496)
|++.. +++|+|+||||++|+.+||+|+||++ |++ +|.|+|+||+++++|.|++|++..
T Consensus 1401 L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1401 IVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 99874 68999999999999999999999999 995 599999999976689999998754
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-90 Score=834.98 Aligned_cols=518 Identities=25% Similarity=0.379 Sum_probs=458.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHH
Q 039402 965 STLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVG 1044 (1496)
Q Consensus 965 ~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~ 1044 (1496)
.....+..++.++++++.++|.+++.+.+.+...+++..++++++|+.++|||.+.+|++++|+++|...+.+.++..++
T Consensus 188 ~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls 267 (716)
T KOG0058|consen 188 KRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLS 267 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHH
Confidence 44567778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHH
Q 039402 1045 AYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQES 1124 (1496)
Q Consensus 1045 ~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~ 1124 (1496)
..+.+.++.++.+++|++.+|.+.++.+..+++...+.++|-+..|++.+...++-+...+...|.++++.|+|+|+.|+
T Consensus 268 ~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~ 347 (716)
T KOG0058|consen 268 DGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEE 347 (716)
T ss_pred HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhH
Confidence 99999999999999999999999887776666666666777777777777777888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1125 RFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWF 1203 (1496)
Q Consensus 1125 ~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~ 1203 (1496)
+..+++.+.++...+.......+..-+.-..++.+.+.+...+.+ ..+...|.+++|..--.+.|...+...+.++...
T Consensus 348 ~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ 427 (716)
T KOG0058|consen 348 QEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSF 427 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888777655544333333222223334443333332222 3345678899999999999999999999999999
Q ss_pred HHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCC-CccceeeeEEeeCCcEEEEEcCC
Q 039402 1204 ACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQM-PLVLQGISCTFPGGEKTGIVGRT 1282 (1496)
Q Consensus 1204 ~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vLk~iS~~I~~GekvgIVGrT 1282 (1496)
+.++-+.+.|.+|+.||++.+|.-+.. ....| . .-+|.|+|+||+|.|+... .+||||+||+|+|||.||+||||
T Consensus 428 ys~lmkgvGAs~rvFel~dr~P~i~~~--G~~~p-~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPS 503 (716)
T KOG0058|consen 428 YSELMKGVGASERVFELMDRKPRIPLT--GTLAP-D-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPS 503 (716)
T ss_pred HHHHHHhcchHHHHHHHhccCCCCCCC--Ccccc-c-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCC
Confidence 999999999999999999876654332 11111 2 4689999999999997542 36999999999999999999999
Q ss_pred CCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCC-CCCcHHHHHHHHHHcCC
Q 039402 1283 GSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQL 1361 (1496)
Q Consensus 1283 GSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L 1361 (1496)
||||||++++|.|+|+|++|+|++||+||++++.+.||++||+|.|||+||+|||||||... ...+||||.+|.++++.
T Consensus 504 GsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANa 583 (716)
T KOG0058|consen 504 GSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANA 583 (716)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999854 47899999999999999
Q ss_pred cHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCc
Q 039402 1362 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRI 1441 (1496)
Q Consensus 1362 ~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl 1441 (1496)
+|||.++|+|+||.|||+|..||||||||++|||||+|||+|||||||||+||.++|..+|++|.+..+++|||+|||||
T Consensus 584 h~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRL 663 (716)
T KOG0058|consen 584 HEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRL 663 (716)
T ss_pred HHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHhhcc
Q 039402 1442 TSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRS 1486 (1496)
Q Consensus 1442 ~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~~~~ 1486 (1496)
+||+.+|+|+|+|+|+|+|.|+|+||+++++|.|++|+++.....
T Consensus 664 STV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 664 STVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDSG 708 (716)
T ss_pred hHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999876543
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-84 Score=812.93 Aligned_cols=565 Identities=26% Similarity=0.364 Sum_probs=498.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 911 FSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLA 990 (1496)
Q Consensus 911 ~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~ 990 (1496)
+..++.++... +....-+++..++.+++.+++++...+..|..-..........+..++++.++...++.++|.++..
T Consensus 142 ~~~f~~~~~~~--~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 142 LSWFIPLLFKY--RRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred hHhHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555432 2233445666778889999999998877754321111222334455666778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039402 991 TAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIV 1070 (1496)
Q Consensus 991 ~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1070 (1496)
+.+.+....+-.++++|+++.|++||.+.++|++++|++ |++.+-..+...+...+..++..+..+++|.+++|+++++
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li 298 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLI 298 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999996 6777777888888888888888888899999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039402 1071 FVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEW 1150 (1496)
Q Consensus 1071 ~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~w 1150 (1496)
.+..++++..+.-+..+..|+..+......+...++..|++.|+.|||+.+.|++|..++.+..+++.+..+.......|
T Consensus 299 ~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~ 378 (709)
T COG2274 299 VLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALI 378 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 87777777666666666666666667777788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCC
Q 039402 1151 LGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPL 1229 (1496)
Q Consensus 1151 l~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1229 (1496)
......++..+.....+++ ......|.++.|..-.+.+....+.+++..++..+.++++...+.||+.+.++.|+|.+.
T Consensus 379 ~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~ 458 (709)
T COG2274 379 LNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG 458 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 9888888887766666655 445568889999998889999999999999999999999999999999999999988642
Q ss_pred CccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCe
Q 039402 1230 AIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309 (1496)
Q Consensus 1230 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~ 1309 (1496)
+..+...|+..|+|+|+||+|+|+++.|++|+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|++||+
T Consensus 459 ---~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~ 535 (709)
T COG2274 459 ---DKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV 535 (709)
T ss_pred ---ccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 22245566779999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhcccEEEcccccccccchhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 039402 1310 DISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1310 dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
|++.+++++||++|++||||++||+||||||+...+ +.+||||++|++.++++|+|.++|.||||+|+|+|.|||||||
T Consensus 536 dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 536 DLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred eHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 999999999999999999999999999999998654 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHh
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
||++||||++++|+|||||||||+||++||+.|++.|.+...+||+|+||||++|+++||||+|||+|+|+|+|+|+||+
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHH
Q 039402 1469 ENKSSSFSQLVAEY 1482 (1496)
Q Consensus 1469 ~~~~s~F~~l~~~~ 1482 (1496)
+. +|.|+++++.+
T Consensus 696 ~~-~g~y~~l~~~q 708 (709)
T COG2274 696 AQ-GGLYARLYQQQ 708 (709)
T ss_pred Hh-cChHHHHHhcc
Confidence 87 89999998754
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-80 Score=786.05 Aligned_cols=544 Identities=28% Similarity=0.389 Sum_probs=458.1
Q ss_pred HHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039402 931 LLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFR 1010 (1496)
Q Consensus 931 ~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ 1010 (1496)
+++.++...+.+..++++.+..+... ........+...++++.++..++.++..++..+.+.+....++.++++++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~ 97 (567)
T COG1132 20 ILLLLLSALLSLLLPLLIGRIIDALL--ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLR 97 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445556667777777764442211 0111122344455555666777777778888888899999999999999999
Q ss_pred CccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1011 APMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSAR 1090 (1496)
Q Consensus 1011 ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r 1090 (1496)
.|+++|+.+++|++++|+++|++.++..+......+...++.+++.+++++..+|.+.++++...+++.+....+.+..+
T Consensus 98 ~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 177 (567)
T COG1132 98 LPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSR 177 (567)
T ss_pred CCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888666666788888999999999998888777766666666666665668
Q ss_pred HHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 039402 1091 ELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVF- 1169 (1496)
Q Consensus 1091 ~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~- 1169 (1496)
+..+......+.+.+.+.|+++|+.+||+|+.++...+++.+..+...+...........+.....++..+.......+
T Consensus 178 ~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (567)
T COG1132 178 KLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALG 257 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999999999999999999999887777777766666554444444444333344443333322222
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEE
Q 039402 1170 LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLL 1249 (1496)
Q Consensus 1170 ~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~ 1249 (1496)
......+.++.|.....+.|...+...+..+...+..++....|.||+.++.+.+++... ... +.++..|.|+|+
T Consensus 258 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~--~~~~~~~~I~f~ 332 (567)
T COG1132 258 GFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPD--PLKDTIGSIEFE 332 (567)
T ss_pred HHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCC--CCCCCCCeEEEE
Confidence 223456678999999999999999999999999999999999999999999987654221 111 134567889999
Q ss_pred eEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEccc
Q 039402 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQD 1329 (1496)
Q Consensus 1250 nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQd 1329 (1496)
||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+||+++++.+||++|++||||
T Consensus 333 ~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd 411 (567)
T COG1132 333 NVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQD 411 (567)
T ss_pred EEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccc
Confidence 999999864 4699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhccCCCCC-CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEc
Q 039402 1330 PVMFEGTVRSNLDPLEE-STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDE 1408 (1496)
Q Consensus 1330 p~LF~gTIR~NLdp~~~-~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDE 1408 (1496)
|+||+||||+||++..+ ++|||+++|+++++++|+|.++|+||||.|||+|.+||||||||+|||||+||+|+||||||
T Consensus 412 ~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDE 491 (567)
T COG1132 412 PLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDE 491 (567)
T ss_pred ceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 99999999999998864 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHh
Q 039402 1409 ATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYT 1483 (1496)
Q Consensus 1409 aTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~ 1483 (1496)
|||++|++||+.||+++++..+++|+|+||||++|+.+||+|+|||+|+|+|+|+|+||+++ +|.|++|+++..
T Consensus 492 aTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~~~ 565 (567)
T COG1132 492 ATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565 (567)
T ss_pred cccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHHhh
Confidence 99999999999999999988889999999999999999999999999999999999999986 899999998765
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-78 Score=786.16 Aligned_cols=558 Identities=22% Similarity=0.317 Sum_probs=460.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 911 FSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLA 990 (1496)
Q Consensus 911 ~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~ 990 (1496)
+..+++|++.... .+...+++.++..++.++.++++....+..............+.+++++.++..++.+++..+..
T Consensus 149 ~~~l~~~~~~~~~--~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (711)
T TIGR00958 149 LFRLLGLSGRDWP--WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFN 226 (711)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555554322 22334444566667777777777654432111111111122345556666777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039402 991 TAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIV 1070 (1496)
Q Consensus 991 ~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1070 (1496)
..+.+...+++.++++++++.|++||+++++|+++||+++|++.++..+...+..++..++.+++.+++++..+|++.++
T Consensus 227 ~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~ 306 (711)
T TIGR00958 227 YTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMV 306 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHH--
Q 039402 1071 FVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAM-- 1148 (1496)
Q Consensus 1071 ~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~-- 1148 (1496)
++..+++.+++..++.+..++..+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+.........
T Consensus 307 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (711)
T TIGR00958 307 TLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAG 386 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666666666666666666666667777788899999999999999999999999999988887766554443322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCC
Q 039402 1149 -EWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEP 1227 (1496)
Q Consensus 1149 -~wl~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~ 1227 (1496)
.|....+..+..+.+... .......|.+++|.+..++.|...+...+..+...+.++++...+.+|+.++++.+++.
T Consensus 387 ~~~~~~~~~~~~~~~il~~--g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 464 (711)
T TIGR00958 387 YLWTTSVLGMLIQVLVLYY--GGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNI 464 (711)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 233222222222211111 12234578899999999999999999999999999999999999999999999876654
Q ss_pred CCCccCCCCCCCCCCcceEEEEeEEeEeCCC-CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEE
Q 039402 1228 PLAIEESRPNDSWPSHGKIDLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI 1306 (1496)
Q Consensus 1228 ~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~I 1306 (1496)
+.. .....++..|.|+|+||+|+|+++ .+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|++
T Consensus 465 ~~~----~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 465 PLT----GTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred CCC----CCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 321 111223557899999999999753 357999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCChHHHhcccEEEcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCc
Q 039402 1307 DGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1385 (1496)
Q Consensus 1307 DG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~ 1385 (1496)
||+|+++++.+++|++|++|||||.+|+|||||||... ++.+|+++++|+++++++++++++|+|+||.++|+|.+|||
T Consensus 541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 620 (711)
T TIGR00958 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620 (711)
T ss_pred CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence 99999999999999999999999999999999999865 56889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChh
Q 039402 1386 GQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPA 1465 (1496)
Q Consensus 1386 GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~ 1465 (1496)
|||||++||||++|+|+|||||||||+||++|++.|++ ....+++|+|+||||++++..||+|+||++|+|+|.|+|+
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~ 698 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHK 698 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHH
Confidence 99999999999999999999999999999999999999 3445899999999999999999999999999999999999
Q ss_pred hHhhcCCcHHHHHH
Q 039402 1466 NLLENKSSSFSQLV 1479 (1496)
Q Consensus 1466 ~Ll~~~~s~F~~l~ 1479 (1496)
||+++ ++.|++|+
T Consensus 699 eL~~~-~~~y~~lv 711 (711)
T TIGR00958 699 QLMED-QGCYKHLV 711 (711)
T ss_pred HHHhC-CCchHhcC
Confidence 99975 57898874
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-78 Score=772.29 Aligned_cols=564 Identities=18% Similarity=0.229 Sum_probs=452.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCc-ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 912 SVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPV-VTGSTLLIVYVALAVGSSFCVLARSTLLA 990 (1496)
Q Consensus 912 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~-~~~~~~l~vy~~l~~~~~~~~~~~~~~~~ 990 (1496)
+.+++|++...+.. .+.+++.++..++.++.++.+.+..+........ .....++.+++++.++..++.+++.++..
T Consensus 11 ~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 11 RWLKQQSKPAKRWL--NLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred HHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666543332 2333344555566666666666544311000001 11222344455566667778888889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039402 991 TAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIV 1070 (1496)
Q Consensus 991 ~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1070 (1496)
..+.+....++.++++++++.|+++|+..++|++++|+++|++.++..+...+..++..++.+++.++++++++|++.++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888888888888888999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039402 1071 FVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEW 1150 (1496)
Q Consensus 1071 ~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~w 1150 (1496)
++..+++..++..++.+..++..+......+.+.+++.|+++|+.+||+|++|+++.+++.+..+...+..........+
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFL 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665566666666667777777777888999999999999999999999999999988888877766655544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhh
Q 039402 1151 LGLRLDMLSSITFAFTLVFLISIPKGFIDPAIA---------GLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYT 1221 (1496)
Q Consensus 1151 l~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~---------gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~ 1221 (1496)
......++..+...+.+++......|.++.|.. -+++.+...+..++..+...+.++.....+.+|+.++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 328 (588)
T PRK11174 249 SSAVLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFL 328 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444332222211111111244444422 22234555667778888888889999999999999999
Q ss_pred cCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCc
Q 039402 1222 CIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA 1301 (1496)
Q Consensus 1222 ~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~ 1301 (1496)
+.|++++.. ...+ ...+..+.|+|+||+|.|.++ +++|+|+||+|+|||++||||+||||||||+++|+|++ |++
T Consensus 329 ~~~~~~~~~--~~~~-~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 329 ETPLAHPQQ--GEKE-LASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred cCCCcccCC--Cccc-cCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 877653211 1111 111234679999999988655 56999999999999999999999999999999999999 999
Q ss_pred cEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCC
Q 039402 1302 GQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380 (1496)
Q Consensus 1302 G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1380 (1496)
|+|.+||+|+++++.+++|++|+||||||+||+|||||||... ++++|||+++|++.|+++++|.++|+|+||.|||+|
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 9999999999999999999999999999999999999999876 479999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeE
Q 039402 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEE 1460 (1496)
Q Consensus 1381 ~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE 1460 (1496)
.|||||||||++||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e 563 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQ 563 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEee
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred ecChhhHhhcCCcHHHHHHHHHh
Q 039402 1461 FDNPANLLENKSSSFSQLVAEYT 1483 (1496)
Q Consensus 1461 ~g~p~~Ll~~~~s~F~~l~~~~~ 1483 (1496)
.|+|++|+++ ++.|++|++.+.
T Consensus 564 ~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 564 QGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred cCCHHHHHhc-chHHHHHHHHhh
Confidence 9999999975 689999987653
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-77 Score=776.32 Aligned_cols=544 Identities=21% Similarity=0.239 Sum_probs=458.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 929 FILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCI 1008 (1496)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~l 1008 (1496)
.++++.++..++.++.++.+....+.............+..+++++.++..++.+++.++....+.+....++.++++++
T Consensus 140 ~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 219 (686)
T TIGR03797 140 AILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRL 219 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777777777655432111111111122345556666777888899999999999999999999999999
Q ss_pred hcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1009 FRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISS 1088 (1496)
Q Consensus 1009 l~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~ 1088 (1496)
++.|++||++.++|++++|++ |++.+...+...+...+..++..++.++++++++|++.++++.++++++.+..++.+.
T Consensus 220 l~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~ 298 (686)
T TIGR03797 220 LRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLL 298 (686)
T ss_pred HcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 7888888887777777777777777888888999988877666555555444444444
Q ss_pred HHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1089 ARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLV 1168 (1496)
Q Consensus 1089 ~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~ 1168 (1496)
.+...+......+...+++.|+++|+.|||+|+.|+++.+++.+..+...+..+.......|.......+..+...+..+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~ 378 (686)
T TIGR03797 299 QVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFA 378 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556677899999999999999999999999999999999988888888777777776666655443333332
Q ss_pred H-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEE
Q 039402 1169 F-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKID 1247 (1496)
Q Consensus 1169 ~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~ 1247 (1496)
+ ......|.++.|.+-.+.++...+..++..+...+.+++....+.+|+.++++.|+|.+.. ..+ ..+..|.|+
T Consensus 379 ~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~~--~~~~~~~I~ 453 (686)
T TIGR03797 379 AAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA---KTD--PGKLSGAIE 453 (686)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC---cCC--CCCCCceEE
Confidence 2 2334578899998888888999999999999999999999999999999999877664311 111 123457899
Q ss_pred EEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEc
Q 039402 1248 LLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIP 1327 (1496)
Q Consensus 1248 f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIp 1327 (1496)
|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|++||+|+++++.+++|++|++||
T Consensus 454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 533 (686)
T TIGR03797 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVL 533 (686)
T ss_pred EEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEc
Confidence 99999999876678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEE
Q 039402 1328 QDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLD 1407 (1496)
Q Consensus 1328 Qdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLD 1407 (1496)
|||.+|+|||||||.....++|+|+++|++.+++++++.++|+|+||+++|+|.|||||||||++||||++++|+|||||
T Consensus 534 Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLD 613 (686)
T TIGR03797 534 QNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD 613 (686)
T ss_pred cCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999987668999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHH
Q 039402 1408 EATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481 (1496)
Q Consensus 1408 EaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~ 1481 (1496)
||||+||++||+.|++.|++. ++|+|+||||++++.+||+|+|||+|+|+|.|+|++|+++ ++.|++|+++
T Consensus 614 EpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~~ 684 (686)
T TIGR03797 614 EATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARR 684 (686)
T ss_pred CCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHh
Confidence 999999999999999999986 6899999999999999999999999999999999999974 7899999874
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-77 Score=778.96 Aligned_cols=564 Identities=21% Similarity=0.294 Sum_probs=471.3
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 910 GFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLL 989 (1496)
Q Consensus 910 ~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~ 989 (1496)
.++.++.+++...+. ...++++.++.+++.++.++.+....+.............+..+++++.++..++.+++.++.
T Consensus 141 ~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (710)
T TIGR03796 141 LLRALWRRLRGSRGA--LLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYL 218 (710)
T ss_pred cHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666776654332 233444456666777777777765543211111111112334555556677778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039402 990 ATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFI 1069 (1496)
Q Consensus 990 ~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1069 (1496)
...+.+....++.++++++++.|++||++.++|++++|++.| ..+...+...+..++..++.+++.++++++++|++++
T Consensus 219 ~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 297 (710)
T TIGR03796 219 RRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTL 297 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 5677777777778888888888888899999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 039402 1070 VFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAME 1149 (1496)
Q Consensus 1070 ~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 1149 (1496)
+.+.+++++.++..++.+..++..+......+...+++.|+++|+.+||+++.|+.+.+++.+..++..+..........
T Consensus 298 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (710)
T TIGR03796 298 IGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQ 377 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777666666666666666666666667778889999999999999999999999999999888888877777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCC
Q 039402 1150 WLGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPP 1228 (1496)
Q Consensus 1150 wl~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~ 1228 (1496)
|.......+..+...+..++ ......|.++.|.+..++++...+...+..+...+.++.....+++|+.++++.|+|.+
T Consensus 378 ~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 457 (710)
T TIGR03796 378 ILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPL 457 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 66665555554433332222 23345788999999999999999999999999999999999999999999998877653
Q ss_pred CCccC--C-CCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEE
Q 039402 1229 LAIEE--S-RPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305 (1496)
Q Consensus 1229 ~~~~~--~-~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ 1305 (1496)
..... . ...+.++..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 537 (710)
T TIGR03796 458 LEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537 (710)
T ss_pred cccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 22100 0 01111345689999999999987667899999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCC
Q 039402 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWS 1384 (1496)
Q Consensus 1306 IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1384 (1496)
+||+|+++++.+++|++|++|||||.+|+|||||||..++ +++|+++++|++.+++++++.++|+|+||.++|+|.|||
T Consensus 538 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LS 617 (710)
T TIGR03796 538 FDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLS 617 (710)
T ss_pred ECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCC
Confidence 9999999999999999999999999999999999998764 689999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecCh
Q 039402 1385 MGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNP 1464 (1496)
Q Consensus 1385 ~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p 1464 (1496)
||||||++||||++++|+|||||||||+||++||+.|.+.|++ .++|+|+||||++++.+||||+|||+|+|+|.|+|
T Consensus 618 GGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~ 695 (710)
T TIGR03796 618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTH 695 (710)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999987 58999999999999999999999999999999999
Q ss_pred hhHhhcCCcHHHHHH
Q 039402 1465 ANLLENKSSSFSQLV 1479 (1496)
Q Consensus 1465 ~~Ll~~~~s~F~~l~ 1479 (1496)
++|+++ ++.|++|+
T Consensus 696 ~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 696 EELWAV-GGAYARLI 709 (710)
T ss_pred HHHHHc-CCcHHHHh
Confidence 999975 68899886
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-77 Score=776.40 Aligned_cols=562 Identities=22% Similarity=0.280 Sum_probs=462.0
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 910 GFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLL 989 (1496)
Q Consensus 910 ~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~ 989 (1496)
+++.++.|++...+. ...++++.++..++.++.++++....+.............+..+++++.++..++.+++.++.
T Consensus 143 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (708)
T TIGR01193 143 SLLKFIPLITRQKKL--IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLL 220 (708)
T ss_pred hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777654332 233445556667777888888876654221111001112233344455566777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039402 990 ATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFI 1069 (1496)
Q Consensus 990 ~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1069 (1496)
...+.+....++.++++++++.|+.||++.++|++++|++ |...+...+...+...+..++.+++.++++++++|++++
T Consensus 221 ~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 299 (708)
T TIGR01193 221 NVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFL 299 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999998 777777666666666666666777777778889999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 039402 1070 VFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAME 1149 (1496)
Q Consensus 1070 ~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 1149 (1496)
+++..++++..+...+.+..++..+......+...+++.|+++|+.|||+|+.|+++.+++.+..+...+..+.......
T Consensus 300 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (708)
T TIGR01193 300 LSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQ 379 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666666666667777777777888899999999999999999999999999998888877777665554444
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCC
Q 039402 1150 WLGLRLDMLSSITFAFTLV-FLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPP 1228 (1496)
Q Consensus 1150 wl~~rl~~l~~~~~~~~~~-~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~ 1228 (1496)
+......++..+...++++ .......|.+++|.+..+.++...+..++..+...+.+++....+++|+.++++.|+|.+
T Consensus 380 ~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 459 (708)
T TIGR01193 380 GQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI 459 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 4333333333222222111 123345788999999999999999999999999999999999999999999998887753
Q ss_pred CCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 039402 1229 LAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308 (1496)
Q Consensus 1229 ~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1308 (1496)
... .....++..|.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|+|||
T Consensus 460 ~~~---~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg 535 (708)
T TIGR01193 460 NKK---KRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG 535 (708)
T ss_pred ccc---cccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECC
Confidence 211 112234557899999999999744 5699999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHHhcccEEEcccccccccchhhccCCC--CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch
Q 039402 1309 IDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL--EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1386 (1496)
Q Consensus 1309 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~--~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~G 1386 (1496)
+|+++++.+++|++|+||||||.||+|||||||... ++++|+++++|++.+++++++.++|+||||.++|+|.+||||
T Consensus 536 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG 615 (708)
T TIGR01193 536 FSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615 (708)
T ss_pred EEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence 999999999999999999999999999999999875 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhh
Q 039402 1387 QRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1387 QrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~ 1466 (1496)
||||++||||++++|+|||||||||+||++|++.|++.|++ .+++|+|+||||++++..||+|+||++|+++|.|+|++
T Consensus 616 QrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~-~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~ 694 (708)
T TIGR01193 616 QKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDE 694 (708)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH-hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999997 47899999999999999999999999999999999999
Q ss_pred HhhcCCcHHHHHHH
Q 039402 1467 LLENKSSSFSQLVA 1480 (1496)
Q Consensus 1467 Ll~~~~s~F~~l~~ 1480 (1496)
|+++ +|.|++|++
T Consensus 695 L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 695 LLDR-NGFYASLIH 707 (708)
T ss_pred HHhc-CCcHHHHhh
Confidence 9975 689999874
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-76 Score=756.44 Aligned_cols=547 Identities=26% Similarity=0.353 Sum_probs=450.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 930 ILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTG--STLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYC 1007 (1496)
Q Consensus 930 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~--~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ 1007 (1496)
.+++.++..++.++.++++.+..+......+.... ..+..+++++.++..++.+++.++....+.+...+++.+++++
T Consensus 28 ~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 107 (592)
T PRK10790 28 AVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDA 107 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666667777777777655321110110000 1122334445556667778888888899999999999999999
Q ss_pred HhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1008 IFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYIS 1087 (1496)
Q Consensus 1008 ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~ 1087 (1496)
++++|+++|+..+.|++++|+++|++.++..+...+..++..++.+++.++++++.+|++.++++..+++.+.+...+.+
T Consensus 108 l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~ 187 (592)
T PRK10790 108 ALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQR 187 (592)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888888888888889899998876554433333333444444
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 039402 1088 SARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWL-GLRLDMLSSITFAFT 1166 (1496)
Q Consensus 1088 ~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl-~~rl~~l~~~~~~~~ 1166 (1496)
..+...+......+...+++.|+++|+.+||+|+.++++.+++.+..+...+..+.......+. .....++..+...+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (592)
T PRK10790 188 YSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGL 267 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555667788999999999999999999999999999888777666555444333322 222333333222221
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceE
Q 039402 1167 LVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKI 1246 (1496)
Q Consensus 1167 ~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I 1246 (1496)
.++......|.++.|.+..++.|...+..++..+...+.++++...+.+|+.++++.+++++.. ...++..+.|
T Consensus 268 ~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~------~~~~~~~~~i 341 (592)
T PRK10790 268 LMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN------DDRPLQSGRI 341 (592)
T ss_pred HHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC------CccCCCCCeE
Confidence 1111123578899999999999999999999999999999999999999999998866543211 1123345789
Q ss_pred EEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEE
Q 039402 1247 DLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSII 1326 (1496)
Q Consensus 1247 ~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iI 1326 (1496)
+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||
T Consensus 342 ~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 342 DIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred EEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 999999999754 5699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEE
Q 039402 1327 PQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILML 1406 (1496)
Q Consensus 1327 pQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiL 1406 (1496)
||||.+|+||||+||.++++++|+++++|+++++++++++++|+||||.++|+|.+||||||||++||||++++|+||||
T Consensus 421 ~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illl 500 (592)
T PRK10790 421 QQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILIL 500 (592)
T ss_pred ccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHhh
Q 039402 1407 DEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTL 1484 (1496)
Q Consensus 1407 DEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~~ 1484 (1496)
|||||+||++|++.|++.|++..++||+|+||||++++..||+|++|++|+++|.|+|++|+++ ++.|++|+++...
T Consensus 501 DEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~-~~~y~~l~~~~~~ 577 (592)
T PRK10790 501 DEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QGRYWQMYQLQLA 577 (592)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCHHHHHHHHHhh
Confidence 9999999999999999999999899999999999999999999999999999999999999976 6999999987644
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-75 Score=748.05 Aligned_cols=506 Identities=23% Similarity=0.317 Sum_probs=447.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHH
Q 039402 971 YVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSI 1050 (1496)
Q Consensus 971 y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~ 1050 (1496)
++++.++..++.+++.++....+.+....++..+++++++.|.++|+....|++++|+++|++.+...+...+..++..+
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T PRK11176 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777888888888999999999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHH
Q 039402 1051 IRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRN 1130 (1496)
Q Consensus 1051 ~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~ 1130 (1496)
+.+++.++++.+.+|+++++++..+++.+++...+.+..++..+......+...+++.|.++|+.+||+|+.++++.+++
T Consensus 151 ~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~ 230 (582)
T PRK11176 151 ASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF 230 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHH
Confidence 99999999999999998877666666655555555555566666666777889999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1131 MKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLEN 1209 (1496)
Q Consensus 1131 ~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~ 1209 (1496)
.+..+...+..........|.....+++..+...+.+.+ ......|.+++|.+.+++++...+...+..+...+..++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 310 (582)
T PRK11176 231 DKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888777777777776666665544333322 2334568899999999999999999999999999999999
Q ss_pred hHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHH
Q 039402 1210 KIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTL 1289 (1496)
Q Consensus 1210 ~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTL 1289 (1496)
...+.+|+.++.+.++|.+.. +....|..+.|+++||+|+|+++.+++|+|+||+|+|||++||||+||||||||
T Consensus 311 ~~~~~~ri~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTL 385 (582)
T PRK11176 311 GMAACQTLFAILDLEQEKDEG-----KRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTI 385 (582)
T ss_pred HHHHHHHHHHHhcCCCcCCCC-----CcCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHH
Confidence 999999999999877653311 111124457899999999998766779999999999999999999999999999
Q ss_pred HHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCC--CCCcHHHHHHHHHHcCCcHHHHh
Q 039402 1290 IQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL--EESTDEQIWEALDKCQLGDEVRK 1367 (1496)
Q Consensus 1290 l~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~--~~~sd~eI~~aL~~~~L~~~i~~ 1367 (1496)
+++|+|+++|++|+|++||+|+++++.+++|++|+||||||++|+||||+||... ++++|+|++++++.+++++++++
T Consensus 386 l~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~ 465 (582)
T PRK11176 386 ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINK 465 (582)
T ss_pred HHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999854 35899999999999999999999
Q ss_pred ccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhccc
Q 039402 1368 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDS 1447 (1496)
Q Consensus 1368 lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~ 1447 (1496)
+|+||||.++|+|.+||||||||++||||++++|+|||||||||+||++|++.|.+.|++..++||+|+||||++++.+|
T Consensus 466 lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~ 545 (582)
T PRK11176 466 MDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKA 545 (582)
T ss_pred cccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHH
Q 039402 1448 DLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEY 1482 (1496)
Q Consensus 1448 DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~ 1482 (1496)
|+|++|++|+|+|.|+|++|+++ ++.|++|++++
T Consensus 546 D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~~ 579 (582)
T PRK11176 546 DEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579 (582)
T ss_pred CEEEEEECCEEEEeCCHHHHHhC-CChHHHHHHHH
Confidence 99999999999999999999975 58999998765
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-75 Score=761.85 Aligned_cols=554 Identities=23% Similarity=0.276 Sum_probs=458.5
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 910 GFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLL 989 (1496)
Q Consensus 910 ~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~ 989 (1496)
+++.++.+++...+. +..++++.++..++.++.++.+....+.............+..+++++.++..++.+++.++.
T Consensus 134 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (694)
T TIGR03375 134 PKHWFWSTLKESWPL--YRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFL 211 (694)
T ss_pred cchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666643332 234445556667777778887775543211111111112233344445566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039402 990 ATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFI 1069 (1496)
Q Consensus 990 ~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1069 (1496)
...+.+....++.++++++++.|++| +..++|++++|+ +|++.+...+...+...+..++.++..++++++++|++++
T Consensus 212 ~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 289 (694)
T TIGR03375 212 DVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVW 289 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999998 788999999999 7999999988887777777777777778888889998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 039402 1070 VFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAME 1149 (1496)
Q Consensus 1070 ~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 1149 (1496)
+.+..+++++.+..++.+..++..+......+...+++.|+++|+.+||+|+.|+.+.+++.+..+...+..+.......
T Consensus 290 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR03375 290 VPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSN 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665555555555566666666666667788899999999999999999999999999999988888777776666555
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCC
Q 039402 1150 WLGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPP 1228 (1496)
Q Consensus 1150 wl~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~ 1228 (1496)
+.....+++..+...+..++ ......|.+++|.+-.+++|...+...+..+...+.+++....+++|+.++++.|+|.+
T Consensus 370 ~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 449 (694)
T TIGR03375 370 LATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP 449 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 55544444443322222222 23345788999999899999999999999999999999999999999999998877643
Q ss_pred CCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 039402 1229 LAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308 (1496)
Q Consensus 1229 ~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1308 (1496)
.. .......+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||
T Consensus 450 ~~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 526 (694)
T TIGR03375 450 EG---TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG 526 (694)
T ss_pred CC---CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 21 111111234678999999999976666799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHHhcccEEEcccccccccchhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1309 IDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1309 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
+|+++++++++|+++++|||||++|+|||||||...+ +++|+|+++|++.+++++++.++|+|+||.++|+|.||||||
T Consensus 527 ~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQ 606 (694)
T TIGR03375 527 VDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQ 606 (694)
T ss_pred EEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHH
Confidence 9999999999999999999999999999999999765 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhH
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
|||++||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|++|
T Consensus 607 rQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eL 686 (694)
T TIGR03375 607 RQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQV 686 (694)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred hhc
Q 039402 1468 LEN 1470 (1496)
Q Consensus 1468 l~~ 1470 (1496)
+++
T Consensus 687 l~~ 689 (694)
T TIGR03375 687 LEA 689 (694)
T ss_pred HHH
Confidence 875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-75 Score=737.27 Aligned_cols=560 Identities=20% Similarity=0.234 Sum_probs=451.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCC-CCCC---cccchHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 913 VYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTK-DVKP---VVTGSTLLIVYVALAVGSSFCVLARSTL 988 (1496)
Q Consensus 913 ~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~-~~~~---~~~~~~~l~vy~~l~~~~~~~~~~~~~~ 988 (1496)
.+++|++...+.. .+.+++.++..++.++.++.+.|..+... ...+ ..........+.+++++..++.++..++
T Consensus 6 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 6 PFLKLYKRHWFML--SLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred HHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555655433222 22333444555556666666665543110 0010 0001111223444556677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039402 989 LATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVF 1068 (1496)
Q Consensus 989 ~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 1068 (1496)
....+.+....++.++++++++.|+.+|++.++|++++|+++|++.++..+...+..++..++.+++.++++++.+|++.
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999899999999999999999999999998
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHH
Q 039402 1069 IVFVPAVGSC-IWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAA 1147 (1496)
Q Consensus 1069 ~~~ip~~~l~-~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~ 1147 (1496)
++++..+++. ..+..++.+..+...+......+.+.+.+.|+++|+.+||+|+.|+++.+++.+..+++.+........
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7664443332 334455556666666666778888999999999999999999999999999999998888877777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCC
Q 039402 1148 MEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYG-LTLNTLLATLIWFACDLENKIISVERIFQYTCIPSE 1226 (1496)
Q Consensus 1148 ~~wl~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~-l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E 1226 (1496)
..+.....+++..+..++...+......|.+++|....++.|. +.....+..+...+.++.....+.+|+.++++.|+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~ 323 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPE 323 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6666555565554443333332222235667777655555554 333445666677788888999999999999987665
Q ss_pred CCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEE
Q 039402 1227 PPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI 1306 (1496)
Q Consensus 1227 ~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~I 1306 (1496)
.+.. ...+ ..+..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|++
T Consensus 324 ~~~~--~~~~--~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i 399 (574)
T PRK11160 324 VTFP--TTST--AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILL 399 (574)
T ss_pred CCCC--cccC--CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 3211 0111 11345789999999999765557999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCChHHHhcccEEEcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCc
Q 039402 1307 DGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1385 (1496)
Q Consensus 1307 DG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~ 1385 (1496)
||+|+++++.+++|++|++|||||.+|+|||||||... ++.+|+++++|++++++++++.+ |+||||.+||+|.+|||
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSg 478 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSG 478 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCH
Confidence 99999999999999999999999999999999999864 46899999999999999999999 99999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChh
Q 039402 1386 GQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPA 1465 (1496)
Q Consensus 1386 GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~ 1465 (1496)
|||||++||||++++|+|||||||||++|++|++.|++.|++..+++|+|+||||++++.+||+|++|++|+++|.|+|+
T Consensus 479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~ 558 (574)
T PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQ 558 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred hHhhcCCcHHHHHHH
Q 039402 1466 NLLENKSSSFSQLVA 1480 (1496)
Q Consensus 1466 ~Ll~~~~s~F~~l~~ 1480 (1496)
||+++ ++.|++|++
T Consensus 559 ~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 559 ELLAQ-QGRYYQLKQ 572 (574)
T ss_pred HHHhc-CcHHHHHHh
Confidence 99975 789999986
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-74 Score=734.53 Aligned_cols=547 Identities=24% Similarity=0.325 Sum_probs=474.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039402 930 ILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIF 1009 (1496)
Q Consensus 930 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll 1009 (1496)
.+++.++..++....+++++...+.............+..+++++.++..++.+++.++....+.+....++..++++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~ 98 (571)
T TIGR02203 19 AGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLL 98 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566666666665433211111111112223445667777788888999999999999999999999999999
Q ss_pred cCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1010 RAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSA 1089 (1496)
Q Consensus 1010 ~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~ 1089 (1496)
+.|.++|+..+.|++++|+++|++.++..+...+..++..++.+++.++++++++|+++++++.++++..++...+.+..
T Consensus 99 ~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~ 178 (571)
T TIGR02203 99 GLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRL 178 (571)
T ss_pred cCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888787878888878
Q ss_pred HHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1090 RELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVF 1169 (1496)
Q Consensus 1090 r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~ 1169 (1496)
++..+......++..+.+.|+++|+.+||+++.++++.+++.+..+...+..........+.....+++..+...+.+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (571)
T TIGR02203 179 RRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFI 258 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999999999888887777777777666666655443333222
Q ss_pred -HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEE
Q 039402 1170 -LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDL 1248 (1496)
Q Consensus 1170 -~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f 1248 (1496)
......|.+++|.+..+++|...+..++..+...+.++.+...+.+|+.++.+.++|.+.. ..+.+ +..+.|++
T Consensus 259 g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~--~~~~~i~~ 333 (571)
T TIGR02203 259 ALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAIE--RARGDVEF 333 (571)
T ss_pred HHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCCC--CCCCeEEE
Confidence 2334578899999999999999999999999999999999999999999999876654311 11111 24578999
Q ss_pred EeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcc
Q 039402 1249 LDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQ 1328 (1496)
Q Consensus 1249 ~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQ 1328 (1496)
+||+|+|+++.+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||+|+++++.+++|++++|+||
T Consensus 334 ~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 334 RNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred EEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 99999997755679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhccCCCC--CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEE
Q 039402 1329 DPVMFEGTVRSNLDPLE--ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILML 1406 (1496)
Q Consensus 1329 dp~LF~gTIR~NLdp~~--~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiL 1406 (1496)
||.+|+||||+||..+. +++|++++++++++++++++.++|+||||.++|+|.+||||||||+|||||++++|+||+|
T Consensus 414 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illL 493 (571)
T TIGR02203 414 DVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILIL 493 (571)
T ss_pred CcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999998663 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHH
Q 039402 1407 DEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEY 1482 (1496)
Q Consensus 1407 DEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~ 1482 (1496)
|||||+||.+|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|+++ ++.|++++++.
T Consensus 494 DEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~~~ 568 (571)
T TIGR02203 494 DEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQLHNMQ 568 (571)
T ss_pred eCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHHHHHHHHh
Confidence 9999999999999999999999899999999999999999999999999999999999999976 68999987754
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-74 Score=746.04 Aligned_cols=565 Identities=23% Similarity=0.305 Sum_probs=469.1
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 910 GFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLL 989 (1496)
Q Consensus 910 ~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~ 989 (1496)
+++.++.+++...+. ...++++.++..++.++.++.+....+.............+..+++++.++..++.+++.++.
T Consensus 126 ~~~~~~~~~~~~~~~--~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQ--FREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred cHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666643332 223444456666667777777775543211111111122334455666667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039402 990 ATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFI 1069 (1496)
Q Consensus 990 ~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1069 (1496)
...+.+....++.++++++++.|+.||+..++|++++|+ +|++.+...+...+..++..++.++..++++++++|++++
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 282 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTG 282 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 6999999888877777776666666677888889999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 039402 1070 VFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAME 1149 (1496)
Q Consensus 1070 ~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 1149 (1496)
+++..++++..+..+..+..+...+......+...+++.|+++|+.+||+|+.|+++.+++.+..+...+..+.......
T Consensus 283 i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (694)
T TIGR01846 283 VVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655555555444444444444455556667888999999999999999999999999999999988888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCC
Q 039402 1150 WLGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPP 1228 (1496)
Q Consensus 1150 wl~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~ 1228 (1496)
+.....+++..+..++..++ ......|.++.|.+..+.++...+..++..+...+.+++....+.+|+.++++.|+|++
T Consensus 363 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 442 (694)
T TIGR01846 363 IAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPR 442 (694)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 76666666655443333222 23345788999999889999999999999999999999999999999999998877653
Q ss_pred CCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 039402 1229 LAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308 (1496)
Q Consensus 1229 ~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1308 (1496)
.. ...+. .+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|+|||
T Consensus 443 ~~--~~~~~--~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 443 SA--GLAAL--PELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred CC--CCCCC--CCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 21 11111 123578999999999987767799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHHhcccEEEcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1309 IDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1309 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
+|+++++.+++|+++++|||||.+|+|||||||... ++++|+++++|++++++++++.++|+||||.++|+|.+|||||
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 999999999999999999999999999999999865 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhH
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
|||++||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|++|
T Consensus 599 ~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHH
Q 039402 1468 LENKSSSFSQLVAEY 1482 (1496)
Q Consensus 1468 l~~~~s~F~~l~~~~ 1482 (1496)
+++ +|.|++|+++.
T Consensus 679 ~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 679 LAL-QGLYARLWQQQ 692 (694)
T ss_pred HHc-CChHHHHHHhh
Confidence 975 68999998753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-73 Score=678.64 Aligned_cols=512 Identities=23% Similarity=0.318 Sum_probs=447.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHH
Q 039402 965 STLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVG 1044 (1496)
Q Consensus 965 ~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~ 1044 (1496)
..+++.+++..++-.++.+.+......++.++...++.++++++.+.+..+-...|+|.+.+.++.-++.++..+...+.
T Consensus 40 ~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLP 119 (559)
T COG4988 40 LPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLP 119 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777888888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhc
Q 039402 1045 AYAFSIIRILGTIAVMSQVAWQVFIVF---VPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFD 1121 (1496)
Q Consensus 1045 ~~~~~~~~~l~~~~~~~~~~~~~~~~~---ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~ 1121 (1496)
..+.+.+..+..++.+++.+|...+++ .|++++++++.. ..++...+..-.+-..+.+||-+.++|+.|+|+|+
T Consensus 120 q~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg---~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~ 196 (559)
T COG4988 120 QMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVG---LAAKDASEKQFSALARLSGHFLDRLRGLETLRAFG 196 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhc
Confidence 999999999999999999999876554 466666554432 23344444455566778899999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-CCCCHHHHHHHHHHHHHHHHHHHH
Q 039402 1122 QESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLIS-IPK-GFIDPAIAGLAVTYGLTLNTLLAT 1199 (1496)
Q Consensus 1122 ~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~-~~~-g~~~~g~~gl~l~y~l~l~~~l~~ 1199 (1496)
..+...++..+...++.+.++.....+---...+|++..+.++.++++... +.. |.++-...-+++..+--+..++..
T Consensus 197 ~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~ 276 (559)
T COG4988 197 RTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRD 276 (559)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999888888888778888999988888777766433 233 566665555667777778888888
Q ss_pred HHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEE
Q 039402 1200 LIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIV 1279 (1496)
Q Consensus 1200 ~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIV 1279 (1496)
+-..+..-.+...+.+.+..+.+.|.+.+... ......|....+|+.+|++++|+++. ++++|+||+++|||++|||
T Consensus 277 lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~--~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talv 353 (559)
T COG4988 277 LGSFFHAAAAGEAAADKLFTLLESPVATPGSG--EKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALV 353 (559)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCc--cccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEE
Confidence 88888888888899999999998777654321 11123343445677779999998765 7999999999999999999
Q ss_pred cCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC-CCcHHHHHHHHHH
Q 039402 1280 GRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE-ESTDEQIWEALDK 1358 (1496)
Q Consensus 1280 GrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~ 1358 (1496)
|+||||||||+++|.|+.+|++|+|.+||+|..+++.+++|+++++|||+|++|+|||||||...+ +.+|+||++|+++
T Consensus 354 G~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~ 433 (559)
T COG4988 354 GASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQ 433 (559)
T ss_pred CCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998765 5899999999999
Q ss_pred cCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEc
Q 039402 1359 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIA 1438 (1496)
Q Consensus 1359 ~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IA 1438 (1496)
+++.|+++. |+||||.+||+|.+|||||+||++||||+|++++++++|||||+||.+||+.|++.|.+.++++|||+||
T Consensus 434 a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~it 512 (559)
T COG4988 434 AGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVIT 512 (559)
T ss_pred hcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEE
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHhh
Q 039402 1439 HRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTL 1484 (1496)
Q Consensus 1439 HRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~~ 1484 (1496)
||++.+.++|+|+|||+||++|.|+|++|.++ ++.|++|+++...
T Consensus 513 Hrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q~~ 557 (559)
T COG4988 513 HRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQEG 557 (559)
T ss_pred cChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHHhc
Confidence 99999999999999999999999999999975 6899999987654
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-75 Score=662.07 Aligned_cols=498 Identities=21% Similarity=0.334 Sum_probs=414.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 039402 978 SSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTI 1057 (1496)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~ 1057 (1496)
+.++.-+|+++......-+.+.+-.++++|+....+.|.-...+|+++.-+.+-.+.+. .+...+.++.-.++.+...+
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~ 350 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM 350 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh
Confidence 35667788888888888899999999999999999999999999988877777666665 44444444445555554444
Q ss_pred HHH-HHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHH
Q 039402 1058 AVM-SQVAWQVFIVFVPAVGSCIWY----QQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMK 1132 (1496)
Q Consensus 1058 ~~~-~~~~~~~~~~~ip~~~l~~~~----~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~ 1132 (1496)
+.. ...+||+.+++..+..+|.+. ..+-.+..|.+..-+.+++ +.-.+++-+.+|+|-|++|++..+++.+
T Consensus 351 vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesr----Ar~vDsllNFETVKyy~Ae~yEverYre 426 (790)
T KOG0056|consen 351 VYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESR----ARQVDSLLNFETVKYYNAEDYEVERYRE 426 (790)
T ss_pred hhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhh----hhhhhhhhcchhhhccCchhhhHHHHHH
Confidence 433 335778877777666666543 2333333344444444443 3456788899999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039402 1133 LMDEYSRPTFHIAAAMEWLGLRLDMLSSITFA-FTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKI 1211 (1496)
Q Consensus 1133 ~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~-~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~ 1211 (1496)
.++++++..+........+...-+.+..+... .+++..+....+..+.|..-+..+|.+++.++++|+-..+..++++.
T Consensus 427 Ail~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nf 506 (790)
T KOG0056|consen 427 AILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNF 506 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhh
Confidence 99999998777665555544444333333222 22222333346777888888999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHH
Q 039402 1212 ISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQ 1291 (1496)
Q Consensus 1212 ~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~ 1291 (1496)
+-+||+.+.++.++|- .+.+..++---.+|.|+|+||+|.|.|+.| ||+||||+++||+.+|+||+||+||||+++
T Consensus 507 iDmEnmfdllkee~eV---vd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~-vl~disF~v~pGktvAlVG~SGaGKSTimR 582 (790)
T KOG0056|consen 507 IDMENMFDLLKEEPEV---VDLPGAPPLKVTQGKIEFSNVTFAYDPGKP-VLSDISFTVQPGKTVALVGPSGAGKSTIMR 582 (790)
T ss_pred hhHHHHHHHhhcCchh---hcCCCCCCccccCCeEEEEEeEEecCCCCc-eeecceEEecCCcEEEEECCCCCchhHHHH
Confidence 9999999998754442 222222322235799999999999998864 999999999999999999999999999999
Q ss_pred HHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhccC
Q 039402 1292 TLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEG 1370 (1496)
Q Consensus 1292 ~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~ 1370 (1496)
+|||+++.++|+|.|||+||+.+..+.||+.||+||||.+||++||..||... ...+|||+.+|.+.++++|.|.+.|+
T Consensus 583 lLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPe 662 (790)
T KOG0056|consen 583 LLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPE 662 (790)
T ss_pred HHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCch
Confidence 99999999999999999999999999999999999999999999999999864 47899999999999999999999999
Q ss_pred CcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEE
Q 039402 1371 KLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLV 1450 (1496)
Q Consensus 1371 gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrI 1450 (1496)
|++|.|||+|-.||||||||+++||++||+|.|++||||||+||..||+.||..+.+..+++|.|+||||++||.++|.|
T Consensus 663 gY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~I 742 (790)
T KOG0056|consen 663 GYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLI 742 (790)
T ss_pred hhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCeEeEecChhhHhhcCCcHHHHHHHHHhh
Q 039402 1451 LLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTL 1484 (1496)
Q Consensus 1451 lVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~~ 1484 (1496)
+|+++|+|+|.|+|+||+++++|.|++|++....
T Consensus 743 Lvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 743 LVISNGRIVERGRHEELLKRDGGAYADMWQAQQA 776 (790)
T ss_pred EEEeCCeEeecCcHHHHHhccCCcHHHHHHHHHh
Confidence 9999999999999999999999999999965554
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-72 Score=658.34 Aligned_cols=500 Identities=21% Similarity=0.292 Sum_probs=429.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHH
Q 039402 974 LAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRI 1053 (1496)
Q Consensus 974 l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~ 1053 (1496)
+++...+.-++-.+......++.-.+++.++++++...+..-...-..|+++||+..|++.+|+..-..+...+..+...
T Consensus 67 ~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~ 146 (573)
T COG4987 67 LAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLI 146 (573)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHH
Confidence 34444455555555666777888899999999999999888899999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHH
Q 039402 1054 LGTIAVMSQVAWQVFIVFVP-AVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMK 1132 (1496)
Q Consensus 1054 l~~~~~~~~~~~~~~~~~ip-~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~ 1132 (1496)
.++.+.+++.+|++.+.+.. ++++...+.-.+.+..|...+.-...+..+.++|.|.+.|....+.||.+++|.+.+..
T Consensus 147 ~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~ 226 (573)
T COG4987 147 AVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEA 226 (573)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHH
Confidence 88888888899888765443 34444556666677777787777888999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 039402 1133 LMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFT-LVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLI-WFACDLENK 1210 (1496)
Q Consensus 1133 ~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~-~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i-~~~~~le~~ 1210 (1496)
..+.+.+..........|-.+.+.++.++.++.. +++......|..+...+.+++.-.+.....+.-+. ..+.++...
T Consensus 227 ~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~ 306 (573)
T COG4987 227 TEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQV 306 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHH
Confidence 9999999999999999999999999988776633 33344355565553223232222223333333333 455788888
Q ss_pred HhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcc-eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHH
Q 039402 1211 IISVERIFQYTCIPSEPPLAIEESRPNDSWPSHG-KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTL 1289 (1496)
Q Consensus 1211 ~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g-~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTL 1289 (1496)
.-|.+|+.+..+.++|..... +.-|..+ .++++||+|+|+.+.++||+|+||++++||||||+||||||||||
T Consensus 307 ~~Sa~Rl~~i~~q~~e~~~~~------~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTl 380 (573)
T COG4987 307 IASARRLNDILDQKPEVTFPD------EQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTL 380 (573)
T ss_pred HHHHHHHhhhccCCcccCCCc------cccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHH
Confidence 999999999887766654321 1112222 899999999999988899999999999999999999999999999
Q ss_pred HHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhc
Q 039402 1290 IQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKK 1368 (1496)
Q Consensus 1290 l~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~l 1368 (1496)
+++|.|.++|++|+|..+|.+++.++.+++|+.|++++|.+++|+||+|+||... ++.||||+|+||++++|.+.+++.
T Consensus 381 lqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~ 460 (573)
T COG4987 381 LQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESA 460 (573)
T ss_pred HHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999753 478999999999999999999999
Q ss_pred cCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccC
Q 039402 1369 EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSD 1448 (1496)
Q Consensus 1369 p~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~D 1448 (1496)
|+||+|.+||+|.+||||||||++|||+||++.++++|||||.+||++||+.|.+.|.+..+|+|+|+||||+..+..||
T Consensus 461 p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~d 540 (573)
T COG4987 461 PDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMD 540 (573)
T ss_pred hhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCeEeEecChhhHhhcCCcHHHHHHH
Q 039402 1449 LVLLLNHGLIEEFDNPANLLENKSSSFSQLVA 1480 (1496)
Q Consensus 1449 rIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~ 1480 (1496)
||+|||+|+++|+|+|++|++ ++|.|++|.+
T Consensus 541 rIivl~~Gkiie~G~~~~Ll~-~~g~~~~l~q 571 (573)
T COG4987 541 RIIVLDNGKIIEEGTHAELLA-NNGRYKRLYQ 571 (573)
T ss_pred EEEEEECCeeeecCCHHhhhc-cccHHHHHhc
Confidence 999999999999999999998 5799999875
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-72 Score=717.26 Aligned_cols=566 Identities=23% Similarity=0.297 Sum_probs=465.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 912 SVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLAT 991 (1496)
Q Consensus 912 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~ 991 (1496)
+.+++|++...+.. .+.+++.++..++.++.++.+....+.............++.+++++.++..++.+++.++...
T Consensus 7 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 7 AALWPFVRPYRGRV--LAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665433222 2333345566666667777666444321000111112223444555555666777888888889
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 039402 992 AGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVF 1071 (1496)
Q Consensus 992 ~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1071 (1496)
.+.+....++..+++++++.|.++|+....|++++|+++|++.++..+...+..++..++.+++.+++++.++|++.+++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888888888889999899999999988766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039402 1072 VPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWL 1151 (1496)
Q Consensus 1072 ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1151 (1496)
+..+++.+.+..++.+..+...+.....+....+++.|.++|+.+||+|+.++++.+++.+..+...+..........|+
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555556666667777777788889999999999999999999999999999998888777766665555555
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCC
Q 039402 1152 GLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLA 1230 (1496)
Q Consensus 1152 ~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~ 1230 (1496)
......+..+...+..++ ......|.+++|.+..+..|...+..++..+...+.++.+...+.+|+.++.+.++|.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 554444433222222222 2334578899999999999999999999999999999999999999999998876553211
Q ss_pred ccCCCCCCCCCCcceEEEEeEEeEeCCCC-CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCe
Q 039402 1231 IEESRPNDSWPSHGKIDLLDLQVRYAPQM-PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309 (1496)
Q Consensus 1231 ~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~ 1309 (1496)
. ...+..+|..+.|+++||+|+|+++. +++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|++||+
T Consensus 325 ~--~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~ 402 (576)
T TIGR02204 325 A--HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGV 402 (576)
T ss_pred C--CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 1 11112234557899999999997543 57999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhcccEEEcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 039402 1310 DISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1310 dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
|+++++.+++|++++|+||||.+|+||||+||... ++.+|++++++++++++.+++.++|+|+||+++|+|.+||||||
T Consensus 403 ~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~ 482 (576)
T TIGR02204 403 DLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482 (576)
T ss_pred EHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHH
Confidence 99999999999999999999999999999999864 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHh
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
||++||||++++|+||+||||||++|++|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|+
T Consensus 483 Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHH
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHH
Q 039402 1469 ENKSSSFSQLVAEY 1482 (1496)
Q Consensus 1469 ~~~~s~F~~l~~~~ 1482 (1496)
+ +++.|++|++.+
T Consensus 563 ~-~~~~~~~l~~~~ 575 (576)
T TIGR02204 563 A-KGGLYARLARLQ 575 (576)
T ss_pred H-cCChHHHHHhhc
Confidence 7 578999988653
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-73 Score=715.29 Aligned_cols=507 Identities=22% Similarity=0.272 Sum_probs=415.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 930 ILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLI--VYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYC 1007 (1496)
Q Consensus 930 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~--vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ 1007 (1496)
.+++.++..++.++.++.+++..+..... .. ....+.. .++++.++..++.+++.++....+.+....++.+++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 95 (529)
T TIGR02868 18 AILLGALALGSAVALLGVSAWLISRAAEM-PP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDR 95 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666677666654321111 11 1111111 11234455666777788888888999999999999999
Q ss_pred HhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHH
Q 039402 1008 IFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIW-YQQYYI 1086 (1496)
Q Consensus 1008 ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~-~~~~y~ 1086 (1496)
+++.|.+||++.++|++++|+++|++.++..+...+..++..++.+++.++++++.+|.+.++++..++++.+ ...++.
T Consensus 96 ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~ 175 (529)
T TIGR02868 96 LARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSL 175 (529)
T ss_pred hhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888889999989999999999999988876655444433 334444
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1087 SSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFT 1166 (1496)
Q Consensus 1087 ~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~ 1166 (1496)
+..+...+......+.+.+++.|+++|+.+||+|+.++++.+++.+..+...+..........+......++..+...++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (529)
T TIGR02868 176 RAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGA 255 (529)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666777889999999999999999999999999999998888877766665555554444444443333222
Q ss_pred HHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcce
Q 039402 1167 LVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGK 1245 (1496)
Q Consensus 1167 ~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~ 1245 (1496)
.++ ......|.+++|.+...+.|...+...+..+...+.++.+...+.+|+.++.+.|+|.+... ...+...+|..+.
T Consensus 256 ~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 334 (529)
T TIGR02868 256 LWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV-VPAAGALGLGKPT 334 (529)
T ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC-CCCCcccCCCCce
Confidence 222 22345788999999999999999999999999999999999999999999998776533211 1111123445678
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+|+||+|+|+++. ++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|++++ .+++|++|++
T Consensus 335 I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~ 412 (529)
T TIGR02868 335 LELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISV 412 (529)
T ss_pred EEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEE
Confidence 99999999997653 599999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEE
Q 039402 1326 IPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKIL 1404 (1496)
Q Consensus 1326 IpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~IL 1404 (1496)
|||||+||+|||||||... ++.+|||+++|++.|+++|++.++|+||||.+||+|.|||||||||+|||||++++|+||
T Consensus 413 V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~il 492 (529)
T TIGR02868 413 FAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPIL 492 (529)
T ss_pred EccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999975 468999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCc
Q 039402 1405 MLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRI 1441 (1496)
Q Consensus 1405 iLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl 1441 (1496)
|||||||+||++||+.|++.|++..+++|+|+||||+
T Consensus 493 iLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 493 LLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-74 Score=731.75 Aligned_cols=516 Identities=24% Similarity=0.319 Sum_probs=433.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHH
Q 039402 963 TGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSL 1042 (1496)
Q Consensus 963 ~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~ 1042 (1496)
....+.+.|+.++++..++.++...++.+.+.|...+++.+.+++++|+++.|||++..|.+..|+++|++.+++.+...
T Consensus 69 ~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geK 148 (1228)
T KOG0055|consen 69 EVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEK 148 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHH
Confidence 34456777888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhcc
Q 039402 1043 VGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQ 1122 (1496)
Q Consensus 1043 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~ 1122 (1496)
+..++..+.++++.+++.++..|++.++.+++.++.......+.+..-.+...+...-+.--+...|++.+++|+.||+.
T Consensus 149 vg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~g 228 (1228)
T KOG0055|consen 149 VGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNG 228 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 99999999999999999999999999988877777666655555555555555556666777889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 039402 1123 ESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAF---TLVFL-ISIPKGFIDPAIAGLAVTYGLTLNTLLA 1198 (1496)
Q Consensus 1123 ~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~---~~~~~-~~~~~g~~~~g~~gl~l~y~l~l~~~l~ 1198 (1496)
|++..+++.+.++...+...... -|.++-....-.++++. ..++. ..+..+..++|.+..++.+.+.-...+.
T Consensus 229 q~~e~~ry~~~L~~~~k~gi~~g---~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLg 305 (1228)
T KOG0055|consen 229 EKKEIERYSKALENALKFGIKKG---LFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLG 305 (1228)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhh
Confidence 99999999998887766544332 23333333222222221 12221 2233456667665554444444444455
Q ss_pred HHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCC-CccceeeeEEeeCCcEEE
Q 039402 1199 TLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQM-PLVLQGISCTFPGGEKTG 1277 (1496)
Q Consensus 1199 ~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vLk~iS~~I~~Gekvg 1277 (1496)
...-....+.+...|.++|.+.++..++-....++.+. .--.+|.|||+||+|+|+... .++|+|+||+|++||.||
T Consensus 306 qa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~--~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~va 383 (1228)
T KOG0055|consen 306 QASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRV--LSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVA 383 (1228)
T ss_pred ccccchHHHhccccchHHHHHHhcCCCCCCcccccCCc--ccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEE
Confidence 55555666778888999999987643332111111111 123579999999999997543 369999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC-CCcHHHHHHHH
Q 039402 1278 IVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE-ESTDEQIWEAL 1356 (1496)
Q Consensus 1278 IVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL 1356 (1496)
+||+|||||||++++|.|+|+|++|+|+|||.||.+++.++||++||+|.|||+||++||+|||.... +.|++||.+|+
T Consensus 384 lVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~ 463 (1228)
T KOG0055|consen 384 LVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAA 463 (1228)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998765 78999999999
Q ss_pred HHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 039402 1357 DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLT 1436 (1496)
Q Consensus 1357 ~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~ 1436 (1496)
+.++.+++|.++|+|+||.|||+|..||||||||+||||||+|+|+||+||||||+||+++|+.+|++|++..+++|.|+
T Consensus 464 k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTiv 543 (1228)
T KOG0055|consen 464 KAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIV 543 (1228)
T ss_pred HHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHhh
Q 039402 1437 IAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTL 1484 (1496)
Q Consensus 1437 IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~~ 1484 (1496)
|||||+||+++|+|+||++|+|+|.|+|+||++++ |.|++||+....
T Consensus 544 VaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q~~ 590 (1228)
T KOG0055|consen 544 VAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQEL 590 (1228)
T ss_pred EeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHHhh
Confidence 99999999999999999999999999999999886 999999987654
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-72 Score=714.97 Aligned_cols=550 Identities=19% Similarity=0.262 Sum_probs=452.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 927 VPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHY 1006 (1496)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~ 1006 (1496)
+.+++++.++..++.++.++++.+..+... +......++..++++.++..+..++...+......+....+..++++
T Consensus 21 ~~~~~~~~i~~~~~~~~~~~~~~~iid~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 97 (588)
T PRK13657 21 GILLAVANVLLAAATFAEPILFGRIIDAIS---GKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFE 97 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566777778888888876654321 11111222333444444444444444444455555666667779999
Q ss_pred HHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1007 CIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYI 1086 (1496)
Q Consensus 1007 ~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~ 1086 (1496)
++++.|..+|++.+.|++++|+++|++.+...+...+..++..++..++.+++++..+|+++++++.++++++.+..++.
T Consensus 98 ~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~ 177 (588)
T PRK13657 98 RIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVM 177 (588)
T ss_pred HHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887777777777777777777888888999888877777777777777787
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1087 SSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFT 1166 (1496)
Q Consensus 1087 ~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~ 1166 (1496)
+..++..+......+...+++.|+++|+.+||+|+.++.+.+++.+..+...+..........+.....+++..+...++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (588)
T PRK13657 178 RKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAI 257 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888999999999999999999999999999999888888777766555555454444444333332222
Q ss_pred HHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcce
Q 039402 1167 LVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGK 1245 (1496)
Q Consensus 1167 ~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~ 1245 (1496)
.++ ......|.+++|.+..++.|...+...+..+...+.++.....+.+|+.++.+.+++.+.. +...+.+ +..+.
T Consensus 258 ~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~~~~--~~~~~ 334 (588)
T PRK13657 258 LVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-PGAIDLG--RVKGA 334 (588)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-CCCCCcC--CCCCe
Confidence 222 3334578899999999999999999999999999999999999999999998765442211 1100111 23568
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++||+|+|+++ +++|+|+||+++|||++||||+||||||||+++|+|+++|++|+|.+||.|+++++.+++|++|+|
T Consensus 335 I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 335 VEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred EEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 9999999999744 569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEE
Q 039402 1326 IPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKIL 1404 (1496)
Q Consensus 1326 IpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~IL 1404 (1496)
+||||.+|+||||+||... ++.+|++++++++++++++++.++|+|+||.++|+|.+||||||||+|||||++++|+||
T Consensus 414 v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~il 493 (588)
T PRK13657 414 VFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPIL 493 (588)
T ss_pred EecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999865 468999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHhh
Q 039402 1405 MLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTL 1484 (1496)
Q Consensus 1405 iLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~~ 1484 (1496)
|||||||+||++|++.|.+.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++ ++.|++|+.+...
T Consensus 494 iLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 572 (588)
T PRK13657 494 ILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLRAQGM 572 (588)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHHHhhc
Confidence 999999999999999999999998889999999999999999999999999999999999999975 6899999986643
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-72 Score=675.13 Aligned_cols=548 Identities=23% Similarity=0.297 Sum_probs=459.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 292 IKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNG-RRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLG 370 (1496)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~-~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~ 370 (1496)
++.+.+..|+.+..+.++.++..+.....|.++.+++|.+.. .+. .....-....+....+.++++.....+..+..+
T Consensus 138 l~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~-~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~ 216 (716)
T KOG0058|consen 138 LLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDS-ADALKRACTILLGLFLIGALANAIRGGLLQYAG 216 (716)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667789999999999999999999999999999998876 222 111112233444555667777777777777888
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039402 371 IRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADF-SWYIHDPWLVLFEVALSILILYKNLGIASLAALF 449 (1496)
Q Consensus 371 ~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~-~~~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~ 449 (1496)
.++-..++..+|++.++....+++++.+||++++++.|++.+.+. ..++....-..++.+.++.+++..-.-.+++.++
T Consensus 217 ~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i 296 (716)
T KOG0058|consen 217 ERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLI 296 (716)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 888888889999999999999999999999999999999999985 4567776667778777777766544444566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 450 GTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSF 529 (1496)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~ 529 (1496)
.+.+++.+..++++..++..++..++..+-.+...|.|++||+||.|+-|+...++..+.=+.-.+..+|......+...
T Consensus 297 ~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~ 376 (716)
T KOG0058|consen 297 VVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFG 376 (716)
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHh
Confidence 77777788888999999999999999999999999999999999999999877776654333323322332222222211
Q ss_pred H--HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 039402 530 V--FWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVE 607 (1496)
Q Consensus 530 ~--~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~ 607 (1496)
. +......++++.+|.+++.++.+|.|...+++.+-..+..++..+...++.++++..+.+|+.++++.++.-+..-.
T Consensus 377 ~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~ 456 (716)
T KOG0058|consen 377 STNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGT 456 (716)
T ss_pred HHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCc
Confidence 1 11223456778889999999999999999999999999999999999999999999999999999976544332211
Q ss_pred CCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----
Q 039402 608 KQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----- 682 (1496)
Q Consensus 608 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~----- 682 (1496)
..|. ...+.|+++|++|+|+..++.++|+|+||+|+|||.||+|||||+||||+.++|+.+|+|++|+|.+||.
T Consensus 457 ~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~ 535 (716)
T KOG0058|consen 457 LAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDI 535 (716)
T ss_pred cccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhc
Confidence 1222 3456899999999999888889999999999999999999999999999999999999999999999994
Q ss_pred --------eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 --------KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 --------~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
+|+|.|+|-+|++||+|||.+|.+ .++|+.+++.+.++.++++..+|+|++|.+||+|..|||||||||||
T Consensus 536 ~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAI 615 (716)
T KOG0058|consen 536 NHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAI 615 (716)
T ss_pred CHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHH
Confidence 699999999999999999999985 67888999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcC-
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSG- 832 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~- 832 (1496)
||||++||.||||||.|||||++.+. +.++.+...++++|||+|+|+++.++.||+|+++++|++++.|+|+|+++..
T Consensus 616 ARALlr~P~VLILDEATSALDaeSE~-lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~ 694 (716)
T KOG0058|consen 616 ARALLRNPRVLILDEATSALDAESEY-LVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPN 694 (716)
T ss_pred HHHHhcCCCEEEEechhhhcchhhHH-HHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcc
Confidence 99999999999999999999998854 5588888888999999999999999999999999999999999999999887
Q ss_pred cchHHHHHHh
Q 039402 833 TDFMELVGAH 842 (1496)
Q Consensus 833 ~~~~~~~~~~ 842 (1496)
+.|.++++.+
T Consensus 695 gly~~Lv~~q 704 (716)
T KOG0058|consen 695 GLYAKLVQRQ 704 (716)
T ss_pred cHHHHHHHHh
Confidence 5788887654
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-71 Score=706.86 Aligned_cols=547 Identities=23% Similarity=0.270 Sum_probs=434.2
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 289 VKLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQ 368 (1496)
Q Consensus 289 ~~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 368 (1496)
.+.++.+.+.+++.+++..++.++..++..+.|++++.++|.+..++......+.++.++++..++..++.....+...+
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFK 89 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677888999999999999999999999999999999764211111222334445555666777778778888889
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 039402 369 LGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGIASLAA 447 (1496)
Q Consensus 369 ~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~ 447 (1496)
.+.++...++..+|+|.++++....+++++|+++|++++|++++.+++. .+..++...+.+++++++++..-...+++.
T Consensus 90 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 169 (588)
T PRK11174 90 AGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLIL 169 (588)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764 455566555555555554443333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 039402 448 LFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIIN----LRKRETGWLKKYVYT 523 (1496)
Q Consensus 448 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~----~R~~E~~~l~~~~~~ 523 (1496)
++++++...+...+.+..++..++.++..+++.+.+.|.++|+++||.|+||+.+.+++.+ .++.+.+..+.....
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 170 LGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555566778888888999999999999999999999999999999998888744 444444433332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 524 SAISSFVFWGAPTFVSVATFGTCILLNVPLESG---------KMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIAS 594 (1496)
Q Consensus 524 ~~~~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~---------~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~ 594 (1496)
..+..++.. .+. +.++.++++.+. +.++.| .+++++.+...+..|+..++..+..+.+++++.+||.+
T Consensus 250 ~~~~~~~~~-~~~-~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 250 SAVLEFFAS-ISI-ALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHH-HHH-HHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211 111 122233333333 344444 44555566777889999999999999999999999999
Q ss_pred hhcCCCCCCccccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCc
Q 039402 595 FFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 674 (1496)
Q Consensus 595 fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~ 674 (1496)
+++.++.++..............++++|++|.|.. ++++|+|+||++++|+++||+||||||||||+++|+|++ |++
T Consensus 327 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 327 FLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred HHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 99876532211110001112235999999987742 368999999999999999999999999999999999999 899
Q ss_pred cEEEEcC-------------eeEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCC
Q 039402 675 GTLKLCG-------------TKAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERG 740 (1496)
Q Consensus 675 G~i~~~g-------------~~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g 740 (1496)
|+|.++| .++||||+|++|++||+|||.+|.+ .++++++++++.|+++++++.+|+|++|.+||+|
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 9999999 4799999999999999999999965 8999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEE
Q 039402 741 INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKIT 820 (1496)
Q Consensus 741 ~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 820 (1496)
.+|||||||||+||||+++||+|+||||||||||+++++++.+ .+....+++|+|+|||+++.++.||+|++|++|+++
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~-~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~ 562 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIV 562 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEe
Confidence 9999999999999999999999999999999999999999975 566667899999999999999999999999999999
Q ss_pred EecChHHHHhcCcchHHHHHHh
Q 039402 821 QAGKYNDLINSGTDFMELVGAH 842 (1496)
Q Consensus 821 ~~G~~~~l~~~~~~~~~~~~~~ 842 (1496)
++|+|+|++++++.|.+++..+
T Consensus 563 e~G~~~eL~~~~~~y~~l~~~q 584 (588)
T PRK11174 563 QQGDYAELSQAGGLFATLLAHR 584 (588)
T ss_pred ecCCHHHHHhcchHHHHHHHHh
Confidence 9999999999888888877543
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=699.48 Aligned_cols=563 Identities=20% Similarity=0.276 Sum_probs=452.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 914 YWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAG 993 (1496)
Q Consensus 914 y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~ 993 (1496)
+++|++...+ .+.+.+++.++..++.++.++.+++..+..... . ....++..++++.++..+..+++..+....+
T Consensus 10 l~~~l~~~k~--~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (585)
T TIGR01192 10 ALSYLNVHKN--RVLLIVIANITLAAITIAEPILFGRIIDAISSK-S--DVLPTLALWAGFGVFNTIAYVLVAREADRLA 84 (585)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554332 223344455666677777777776654321111 1 1111222222333333334444444444555
Q ss_pred HHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039402 994 YKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVP 1073 (1496)
Q Consensus 994 ~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip 1073 (1496)
.+....++.++++++++.|++||++.++|++++|+++|++.+...+...+..++..++.+++.+++++.++|.+.++++.
T Consensus 85 ~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 164 (585)
T TIGR01192 85 HGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMV 164 (585)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677799999999999999999999999999999999998888888887888888888888888999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 039402 1074 AVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGL 1153 (1496)
Q Consensus 1074 ~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~ 1153 (1496)
+++++.++.+.+.+..++..+......+...+++.|+++|+.+||+|+.++.+.+++.+..+...+..+.......+...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (585)
T TIGR01192 165 LGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASG 244 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777778888877888889999999999999999999999999999888888776665544433333333
Q ss_pred HHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCcc
Q 039402 1154 RLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIE 1232 (1496)
Q Consensus 1154 rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~ 1232 (1496)
...++..+...+..++ ......|.+++|.+..+++|...+...+..+...+.++.....+.+|+.+..+.+++.+.
T Consensus 245 ~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~--- 321 (585)
T TIGR01192 245 LNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE--- 321 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---
Confidence 2333332222222222 233457889999988889999999999999999999999999999999999876544221
Q ss_pred CCCCCCCCC-CcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeC
Q 039402 1233 ESRPNDSWP-SHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI 1311 (1496)
Q Consensus 1233 ~~~~~~~wp-~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI 1311 (1496)
...+ ..++ ..+.|+++||+|+|+++ .++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+
T Consensus 322 ~~~~-~~~~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 399 (585)
T TIGR01192 322 PADA-PELPNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDI 399 (585)
T ss_pred CccC-CCCCCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEh
Confidence 1111 1122 35689999999999754 3589999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhcccEEEcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 039402 1312 SLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1390 (1496)
Q Consensus 1312 ~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQl 1390 (1496)
.+++.+++|++++++||||.+|+||||+||... ++.+|+|++++++.+++++++.++|+|+||.++|+|.+||||||||
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qr 479 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQR 479 (585)
T ss_pred hhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence 999999999999999999999999999999865 4679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhc
Q 039402 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1391 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
++|||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++
T Consensus 480 l~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 480 LAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999975
Q ss_pred CCcHHHHHHHHHhhccC
Q 039402 1471 KSSSFSQLVAEYTLRSS 1487 (1496)
Q Consensus 1471 ~~s~F~~l~~~~~~~~~ 1487 (1496)
++.|++|++.+....+
T Consensus 560 -~~~y~~l~~~~~~~~~ 575 (585)
T TIGR01192 560 -DGRFYKLLRRSGLLTN 575 (585)
T ss_pred -CChHHHHHHhCccccC
Confidence 6899999987765443
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-71 Score=702.19 Aligned_cols=512 Identities=22% Similarity=0.274 Sum_probs=429.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHH
Q 039402 967 LLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAY 1046 (1496)
Q Consensus 967 ~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~ 1046 (1496)
++.+++++.++..++.+++.++....+.+....++.++++++++.|+++|++.++|++++|+++|++.+...+...+..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~ 117 (569)
T PRK10789 38 WIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTL 117 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34445555556666777777788888999999999999999999999999999999999999999999987777777777
Q ss_pred HHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHH
Q 039402 1047 AFSIIRILGTIAVM-SQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESR 1125 (1496)
Q Consensus 1047 ~~~~~~~l~~~~~~-~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~ 1125 (1496)
+..++..++.++++ +.++|++.++++..+++..++.+.+.+..++..+......+.+.+++.|+++|+.+||+|+.+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~ 197 (569)
T PRK10789 118 VDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR 197 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHH
Confidence 77666655555555 47888887766665555555666665655666666666778899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1126 FRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLV-FLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFA 1204 (1496)
Q Consensus 1126 f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~-~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~ 1204 (1496)
+.+++.+..+...+..+.......+..........+...+... .......|.+++|.+..+..|...+..++..+...+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~ 277 (569)
T PRK10789 198 QSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMF 277 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888777766655444444333333322222211111 123345788999998888889988988998999999
Q ss_pred HHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCC
Q 039402 1205 CDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGS 1284 (1496)
Q Consensus 1205 ~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGS 1284 (1496)
.+++....+.+|+.++.+.++|.+.. ..+.+ +..|.|+++||+|+|+++.+++|+|+||+|+|||++||||+|||
T Consensus 278 ~~~~~~~~a~~ri~~ll~~~~~~~~~---~~~~~--~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGs 352 (569)
T PRK10789 278 NIVERGSAAYSRIRAMLAEAPVVKDG---SEPVP--EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGS 352 (569)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCC---CCCCC--CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCC
Confidence 99999999999999999876543211 11111 23568999999999986556799999999999999999999999
Q ss_pred CHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcH
Q 039402 1285 GKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGD 1363 (1496)
Q Consensus 1285 GKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~ 1363 (1496)
|||||+++|.|+++|++|+|.+||.|+++++.+++|++++++||||.+|+||||+||... ++++|++++++++.+++++
T Consensus 353 GKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~ 432 (569)
T PRK10789 353 GKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHD 432 (569)
T ss_pred CHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999999999999999865 4689999999999999999
Q ss_pred HHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcch
Q 039402 1364 EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITS 1443 (1496)
Q Consensus 1364 ~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~t 1443 (1496)
++.++|+|+||.++|+|.+||||||||++||||++++|+|||||||||+||+++++.|++.|++..+++|+|+||||+++
T Consensus 433 ~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~ 512 (569)
T PRK10789 433 DILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSA 512 (569)
T ss_pred HHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred hcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHhh
Q 039402 1444 VIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTL 1484 (1496)
Q Consensus 1444 i~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~~ 1484 (1496)
+..||+|++|++|+++|.|+|++|+++ ++.|++|+.....
T Consensus 513 ~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 513 LTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred HHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 999999999999999999999999975 6899999976543
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-71 Score=646.16 Aligned_cols=501 Identities=24% Similarity=0.364 Sum_probs=400.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHH
Q 039402 965 STLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVG 1044 (1496)
Q Consensus 965 ~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~ 1044 (1496)
...+..|.+..+++.+|..++.+.++....++-+....+.+++.+...+++|.+..+|.+-++..+-...+...+...+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999998887777777777666666665
Q ss_pred HHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHH
Q 039402 1045 AYAFSIIRILGTIAVMSQ-VAWQVFIVFVPAVGSCIW----YQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRS 1119 (1496)
Q Consensus 1045 ~~~~~~~~~l~~~~~~~~-~~~~~~~~~ip~~~l~~~----~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRa 1119 (1496)
.++.+++.+......+.+ ..+.+.++++..+..|.. +.++--+..++..+ +.........|++.+-.+||+
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~----Adn~as~~~~dsL~Nye~VKs 229 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNN----ADNSASRRAYDSLINYEIVKS 229 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHh----hhhHHHHHHHHHHhhHHHHHH
Confidence 555555554443333222 233344433333333322 22222222333333 333444567789999999999
Q ss_pred hccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----hcCCCCCHHHHHHHHHHHHHHH
Q 039402 1120 FDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFL-IS----IPKGFIDPAIAGLAVTYGLTLN 1194 (1496)
Q Consensus 1120 f~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~-~~----~~~g~~~~g~~gl~l~y~l~l~ 1194 (1496)
|+.|++..+++...+..+-+......+...-+ ++....++.+...++ +. ...+.++.+..-+..+...++.
T Consensus 230 fNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~l----nfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~ 305 (591)
T KOG0057|consen 230 FNNEEYEASRYDGSLKTYERAGLKYSSSLAFL----NFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLS 305 (591)
T ss_pred cccHHHHHHHHHHHHHHHHHhhhhHHhHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHH
Confidence 99999999999999888877766554433333 333333333222221 11 1344566667777777778888
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCc
Q 039402 1195 TLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGE 1274 (1496)
Q Consensus 1195 ~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~Ge 1274 (1496)
..+..+-..++++-+.+.-++-.....+.... +.+. +++.-+..|.|+|+||++.|.|+. ++|+|+||+|++||
T Consensus 306 ~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~----i~~~-~~~i~~~~~~I~F~dV~f~y~~k~-~iL~gvsf~I~kGe 379 (591)
T KOG0057|consen 306 LPLNFLGSVYRELRQALTDMRTLFILLEVDED----IQEA-ALPIELFGGSIEFDDVHFSYGPKR-KVLKGVSFTIPKGE 379 (591)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhh----hhhc-cCCcccCCCcEEEEeeEEEeCCCC-ceecceeEEecCCC
Confidence 88888888888888877777665544321111 1111 122223457799999999998764 59999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC-CCcHHHHH
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE-ESTDEQIW 1353 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~ 1353 (1496)
||||||++||||||++++|+|+++ .+|+|+|||+||++++++.+|+.||+||||..||++||-+||...+ ..+|||+.
T Consensus 380 kVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~ 458 (591)
T KOG0057|consen 380 KVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVV 458 (591)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999998654 78999999
Q ss_pred HHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcE
Q 039402 1354 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCT 1433 (1496)
Q Consensus 1354 ~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~T 1433 (1496)
+++++++++|.+.++|+|++|.|||+|..||||||||++||||+||+|+|+++|||||+||.+||+.|.+.|+....++|
T Consensus 459 e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rT 538 (591)
T KOG0057|consen 459 EACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRT 538 (591)
T ss_pred HHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHH
Q 039402 1434 VLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481 (1496)
Q Consensus 1434 VI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~ 1481 (1496)
+|+|+||++++++||+|+|||+|+|+|+|+|+||++ +++.|++++..
T Consensus 539 vI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~ 585 (591)
T KOG0057|consen 539 VIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTT 585 (591)
T ss_pred EEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcc
Confidence 999999999999999999999999999999999998 77788777653
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-70 Score=692.48 Aligned_cols=518 Identities=21% Similarity=0.278 Sum_probs=428.0
Q ss_pred HHHHHHHHHHHHHhhhHHHhhcCCCC-CCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039402 931 LLAQTLFQILQIASNYWIVWATPGTK-DVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIF 1009 (1496)
Q Consensus 931 ~~~~~~~~~~~~~~~~wl~~~~~~~~-~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll 1009 (1496)
+++.++..++.++.++.+.+..+... ..........+...++++.++..++.+++.++....+.+...+++.+++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~ 88 (529)
T TIGR02857 9 GLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVA 88 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666667776666554221 11111112234455666677778888899999999999999999999999999
Q ss_pred cCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1010 RAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSA 1089 (1496)
Q Consensus 1010 ~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~ 1089 (1496)
+.|..+|+..++|++++|+++|++.++..+...+..++..++.+++.+++++..+|.+.++++..+++..++...+.+..
T Consensus 89 ~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~ 168 (529)
T TIGR02857 89 ALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAA 168 (529)
T ss_pred hCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888888888888888888888999877665554444433333444444
Q ss_pred HHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 039402 1090 RELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTL-V 1168 (1496)
Q Consensus 1090 r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~-~ 1168 (1496)
+...+......+...+++.|+++|+.+||+|+.|+++.+++.+..+...+..........+......++..+...+.. +
T Consensus 169 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (529)
T TIGR02857 169 QAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVY 248 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666788999999999999999999999999999888888777666666666666655555544333221 2
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEE
Q 039402 1169 FLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDL 1248 (1496)
Q Consensus 1169 ~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f 1248 (1496)
.......|.+++|.+..++.|...+...+..+...+..+.....+.+|+.++.+.+++... . .+...+..+.|+|
T Consensus 249 ~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~----~-~~~~~~~~~~i~~ 323 (529)
T TIGR02857 249 IGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG----K-APVTAAPAPSLEF 323 (529)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC----C-cCCCCCCCCeEEE
Confidence 2222337889999888888888888888999999999999999999999999975543221 1 1111233468999
Q ss_pred EeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcc
Q 039402 1249 LDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQ 1328 (1496)
Q Consensus 1249 ~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQ 1328 (1496)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||.|+++++.+++|+++++|||
T Consensus 324 ~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q 403 (529)
T TIGR02857 324 SGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQ 403 (529)
T ss_pred EEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcC
Confidence 99999998665579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEE
Q 039402 1329 DPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLD 1407 (1496)
Q Consensus 1329 dp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLD 1407 (1496)
||.+|+|||||||... ++.+|+++++|++.++++++++++|+||||.++|+|.+||||||||++||||++++|+|++||
T Consensus 404 ~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililD 483 (529)
T TIGR02857 404 HPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLD 483 (529)
T ss_pred CCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999864 467999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEE
Q 039402 1408 EATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLL 1453 (1496)
Q Consensus 1408 EaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL 1453 (1496)
||||++|++|++.|++.|++..+++|+|+||||++++..||+|+||
T Consensus 484 E~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 484 EPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-69 Score=680.85 Aligned_cols=549 Identities=24% Similarity=0.327 Sum_probs=472.3
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 288 TVKLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQ 367 (1496)
Q Consensus 288 ~~~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 367 (1496)
..+.++..++-+|+.+.-..+..++..++.++.|++.+.++|.+-...+ ....+++++++++..+++.++.....+...
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~-~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS-RSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777778889988888999999999999999999999998865443 334566777888888899999988999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039402 368 QLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGIASLA 446 (1496)
Q Consensus 368 ~~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~~~l~ 446 (1496)
.++.|+...+...+|+|.+++|..+++++++||++++++ |.++|.++.. .+.....-.+-.++.+++++.+-+.-+++
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li 298 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLI 298 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999996 8999999864 33333333333444455566666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 447 ALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAI 526 (1496)
Q Consensus 447 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~ 526 (1496)
+++.+++.+.+..++.+..++..++.++...++.+.+.|.++||++||..+-|+.+..++++.-.+..+...+.......
T Consensus 299 ~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~ 378 (709)
T COG2274 299 VLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALI 378 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 88888888888888899999999999999999999999999999999999999999999988777777766665555544
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 039402 527 SSFVFWGAP--TFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPD 604 (1496)
Q Consensus 527 ~~~~~~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~ 604 (1496)
......... .-+.+++||++.++.+.+|.|.++++..+...+..|+..+.+.+..+.+++++.+|+.+.++.+..++.
T Consensus 379 ~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~ 458 (709)
T COG2274 379 LNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG 458 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 443333322 235567899999999999999999999999999999999999999999999999999999988755332
Q ss_pred cccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--
Q 039402 605 LVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-- 682 (1496)
Q Consensus 605 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-- 682 (1496)
...........+.|+++|++|.|..+ +.++|+|+||+|++||++||+|+||||||||+|+|+|.++|++|+|.+||.
T Consensus 459 ~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl 537 (709)
T COG2274 459 DKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDL 537 (709)
T ss_pred ccccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeH
Confidence 21111122245679999999999854 348999999999999999999999999999999999999999999999994
Q ss_pred -----------eEEEccCCccCCCcHHHHhccCCCC-CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHH
Q 039402 683 -----------KAYVAQSPWIQSGKIEDNILFGKEM-NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750 (1496)
Q Consensus 683 -----------~~yv~Q~~~i~~~ti~eNI~~g~~~-~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 750 (1496)
++||+|++.+|+|||+|||.++.|. +.|+..++++..+.++++..+|.|++|.+||+|.+||||||||
T Consensus 538 ~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQr 617 (709)
T COG2274 538 NDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617 (709)
T ss_pred HhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHH
Confidence 6999999999999999999999874 4577888888889999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHh
Q 039402 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
++||||++++|+|+||||||||||+++++.+.+. +....+|+|+|+||||++.+..||+|+||++|+|+++|+++|+++
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~-L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH-HHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHH
Confidence 9999999999999999999999999999998765 455667899999999999999999999999999999999999999
Q ss_pred cCcchHHHHH
Q 039402 831 SGTDFMELVG 840 (1496)
Q Consensus 831 ~~~~~~~~~~ 840 (1496)
.++.|.+++.
T Consensus 697 ~~g~y~~l~~ 706 (709)
T COG2274 697 QGGLYARLYQ 706 (709)
T ss_pred hcChHHHHHh
Confidence 9888887764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=686.64 Aligned_cols=544 Identities=22% Similarity=0.256 Sum_probs=449.5
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 289 VKLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQ 368 (1496)
Q Consensus 289 ~~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 368 (1496)
..+++..++.+++.++...++.++..++.++.|++++.++|.+..... ....+.++++++++.++..++.....+...+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (686)
T TIGR03797 124 RDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD-RSLLVQIALALLAAAVGAAAFQLAQSLAVLR 202 (686)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677788889999999999999999999999999998754322 2223444555666666777888888888899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 039402 369 LGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWY-IHDPWLVLFEVALSILILYKNLGIASLAA 447 (1496)
Q Consensus 369 ~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~~~lL~~~lg~~~l~~ 447 (1496)
++.++...++..+|+|.++++....++.++|+++++++ |++.+.+++.. +.......+.+++++++++..-++.+++.
T Consensus 203 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 281 (686)
T TIGR03797 203 LETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVA 281 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997 89999886543 22222222233444555555555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 448 LFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAIS 527 (1496)
Q Consensus 448 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~ 527 (1496)
++++++..++...+.+...+..++.++..+++.+...|.++|+++||.++.|+.+.+++++..++..+...+........
T Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (686)
T TIGR03797 282 VALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLL 361 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677778888888999999999999999999999999999999999998888776655555444444443333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 039402 528 SFVFWGAP--TFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDL 605 (1496)
Q Consensus 528 ~~~~~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 605 (1496)
..+..... ..+.++.++++.+.++.+|.|.++++..++..+..|+..++..+..+.+++++++|+.++++.++..+..
T Consensus 362 ~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 441 (686)
T TIGR03797 362 TVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 33222222 2233455677777889999999999999999999999999999999999999999999999765432211
Q ss_pred ccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe---
Q 039402 606 VEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--- 682 (1496)
Q Consensus 606 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--- 682 (1496)
. .........++++|++|+|+.+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.
T Consensus 442 ~--~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 518 (686)
T TIGR03797 442 K--TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLA 518 (686)
T ss_pred c--CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcC
Confidence 1 1111123469999999999643 468999999999999999999999999999999999999999999999984
Q ss_pred ----------eEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 683 ----------KAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 683 ----------~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
++||||+|++|++||+|||.+|.+.+++++.++++.++++++++.+|+|++|.+||+|.+|||||||||+
T Consensus 519 ~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRia 598 (686)
T TIGR03797 519 GLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLL 598 (686)
T ss_pred cCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 5999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
||||++++|+|+|||||||+||+++++++.+.+ +.. ++|+|+|||+++.++.||+|++|++|+|++.|+++|+++.+
T Consensus 599 lARAll~~p~iLiLDEpTS~LD~~te~~i~~~L-~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~ 675 (686)
T TIGR03797 599 IARALVRKPRILLFDEATSALDNRTQAIVSESL-ERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMARE 675 (686)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999997654 333 68999999999999999999999999999999999999888
Q ss_pred cchHHHHH
Q 039402 833 TDFMELVG 840 (1496)
Q Consensus 833 ~~~~~~~~ 840 (1496)
+.|.++..
T Consensus 676 ~~y~~l~~ 683 (686)
T TIGR03797 676 GLFAQLAR 683 (686)
T ss_pred cHHHHHHH
Confidence 88887764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-68 Score=691.50 Aligned_cols=544 Identities=19% Similarity=0.234 Sum_probs=455.1
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 290 KLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQL 369 (1496)
Q Consensus 290 ~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 369 (1496)
+.++..++.+++.++...+..++..++.++.|++++.++|.+..... ....+.++++++++.++..++.....+...++
T Consensus 143 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (710)
T TIGR03796 143 RALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR-QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRL 221 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667778888888889999999999999999999997754332 22234445555666677778888888889999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 039402 370 GIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGIASLAAL 448 (1496)
Q Consensus 370 ~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l 448 (1496)
+.++...++..+|+|.++++....++.++|+++|+++.| +.+.+++. .+.......+.+++.+++++..-++.+++.+
T Consensus 222 ~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 300 (710)
T TIGR03796 222 QIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGI 300 (710)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 67888653 3444455555555566666655566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 449 FGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISS 528 (1496)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~ 528 (1496)
+.+++.+.+...+.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.+++.+.+.++.+...+.........
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (710)
T TIGR03796 301 AFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILG 380 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777788888888889999999999999999999999999999999999999888777776665555444433
Q ss_pred HHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc
Q 039402 529 FVFWGAP--TFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLV 606 (1496)
Q Consensus 529 ~~~~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 606 (1496)
.+..... ..+.++.++++.+.++.+|.|.++++..++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 381 ~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~ 460 (710)
T TIGR03796 381 VLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEE 460 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 3222222 23345667888888999999999999999999999999999999999999999999999997754332211
Q ss_pred ----c-CCCC-CCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEc
Q 039402 607 ----E-KQPS-GSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC 680 (1496)
Q Consensus 607 ----~-~~~~-~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~ 680 (1496)
. .... ......++++|++|+|+.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++
T Consensus 461 ~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 539 (710)
T TIGR03796 461 EEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFD 539 (710)
T ss_pred ccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 0 0001 1123469999999999743 4689999999999999999999999999999999999999999999999
Q ss_pred Ce-------------eEEEccCCccCCCcHHHHhccCC-CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChH
Q 039402 681 GT-------------KAYVAQSPWIQSGKIEDNILFGK-EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGG 746 (1496)
Q Consensus 681 g~-------------~~yv~Q~~~i~~~ti~eNI~~g~-~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 746 (1496)
|. ++||||+|++|++||+|||.++. +.+++++.++++.++++++++.+|.|++|.+||+|.+||||
T Consensus 540 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGG 619 (710)
T TIGR03796 540 GIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGG 619 (710)
T ss_pred CEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHH
Confidence 83 69999999999999999999886 47889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChH
Q 039402 747 QKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYN 826 (1496)
Q Consensus 747 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~ 826 (1496)
|||||+||||++++|+|+||||||||||+++++++++.+.+ .++|+|+|||+++.+..||+|++|++|++++.|+++
T Consensus 620 QrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~ 696 (710)
T TIGR03796 620 QRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHE 696 (710)
T ss_pred HHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999876543 589999999999999999999999999999999999
Q ss_pred HHHhcCcchHHHH
Q 039402 827 DLINSGTDFMELV 839 (1496)
Q Consensus 827 ~l~~~~~~~~~~~ 839 (1496)
|+++.++.|.+++
T Consensus 697 ~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 697 ELWAVGGAYARLI 709 (710)
T ss_pred HHHHcCCcHHHHh
Confidence 9998888887764
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-71 Score=622.20 Aligned_cols=488 Identities=23% Similarity=0.379 Sum_probs=413.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCch---hHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039402 985 RSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSG---RIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMS 1061 (1496)
Q Consensus 985 ~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G---rIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~ 1061 (1496)
|..++...+..+-+.+--+.+.|+....+.|.-+..+| |.+.|=++-++. .+...+...+..++.+....+++.
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~---i~~~~l~~i~P~~~Ei~l~~vi~~ 78 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIET---ILRWILFNILPTLVEISLVAVILW 78 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHH---HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34456677778888888889999999999998877666 445555544444 444455555555555554444433
Q ss_pred -HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhH
Q 039402 1062 -QVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRP 1140 (1496)
Q Consensus 1062 -~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~ 1140 (1496)
...|++..+.+..+++|.++.-.-....-..+|.-..+-+...+.-.+++-.-+|++.|+.|+.+..++...++.+.++
T Consensus 79 ~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a 158 (497)
T COG5265 79 RVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKA 158 (497)
T ss_pred hhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHH
Confidence 4678888887777777766544434444445555555666667778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 039402 1141 TFHIAAAMEWLGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQ 1219 (1496)
Q Consensus 1141 ~~~~~~~~~wl~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~ 1219 (1496)
....+.+..||++--..+.+......... ..-+..|.++.|...+.-.|..+++.+++.+-..+.++.+.....|+..+
T Consensus 159 ~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfd 238 (497)
T COG5265 159 AIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFD 238 (497)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHH
Confidence 98888888888876655544433322222 22335788899999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCccCCCCCCCCC-CcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1220 YTCIPSEPPLAIEESRPNDSWP-SHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1220 ~~~~~~E~~~~~~~~~~~~~wp-~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
..+.+.|-. +....|+-|| ..|.|.|+||+|.|.|..| +|+|+||++++|+++||||++|+||||+.++|+|+|+
T Consensus 239 Ll~~~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r~-iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD 314 (497)
T COG5265 239 LLDVEAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD 314 (497)
T ss_pred hhccchhhc---cCCCCccccccccceEEEEEEEeeccccch-hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC
Confidence 988776543 3334556675 4688999999999998764 9999999999999999999999999999999999999
Q ss_pred CCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhccCCcccccc
Q 039402 1299 PAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVT 1377 (1496)
Q Consensus 1299 p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~ 1377 (1496)
+++|.|.|||.||..+..+.||+.||+||||.+||++|+..|+... +..+++|++.|++.++++++|+++|+|+||.||
T Consensus 315 ~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vg 394 (497)
T COG5265 315 VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG 394 (497)
T ss_pred CcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccc
Confidence 9999999999999999999999999999999999999999999865 478999999999999999999999999999999
Q ss_pred cCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCe
Q 039402 1378 ENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGL 1457 (1496)
Q Consensus 1378 e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ 1457 (1496)
|.|-.||||||||+++||++||+|+||+||||||+||..||+.||.+|++..+++|.++|||||+||.|+|.|+||++|+
T Consensus 395 erglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~ 474 (497)
T COG5265 395 ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGR 474 (497)
T ss_pred hheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeEecChhhHhhcCCcHHHHHHH
Q 039402 1458 IEEFDNPANLLENKSSSFSQLVA 1480 (1496)
Q Consensus 1458 IvE~g~p~~Ll~~~~s~F~~l~~ 1480 (1496)
|+|.|+|++|+++ +|.|++|+.
T Consensus 475 i~erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 475 IVERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred EEecCcHHHHHHc-CChHHHHhc
Confidence 9999999999976 899999974
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-68 Score=671.66 Aligned_cols=528 Identities=18% Similarity=0.163 Sum_probs=423.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039402 930 ILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIF 1009 (1496)
Q Consensus 930 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll 1009 (1496)
.+++.++..++.++.++.+....+.............++.+++++.++..++.+++.++....+.+....++.+++++++
T Consensus 11 ~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 90 (544)
T TIGR01842 11 VGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASF 90 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666677777776554321101111112234445555666677888889999999999999999999999999
Q ss_pred cCccccccccCchhHHHHHhhhHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1010 RAPMSFFDATPSGRIINRASTDQSAADLGIPS-LVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISS 1088 (1496)
Q Consensus 1010 ~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~ 1088 (1496)
+.|+.. .|...+++++|++.+...+.. .+..++..++.++ .+++++..+|++.++++..+++.+.+..++.+.
T Consensus 91 ~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~ 164 (544)
T TIGR01842 91 SATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRA 164 (544)
T ss_pred cCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999843 366789999999999887766 3444444444443 345677888887766554444444444444444
Q ss_pred HHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 039402 1089 ARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTL- 1167 (1496)
Q Consensus 1089 ~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~- 1167 (1496)
.+...+......+...+++.|+++|+.+||+|+.++.+.+++.+..++..+.................++..+...+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (544)
T TIGR01842 165 TKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLG 244 (544)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555667778889999999999999999999999999998888887766655444443333333333332222222
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEE
Q 039402 1168 VFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKID 1247 (1496)
Q Consensus 1168 ~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~ 1247 (1496)
+.......|.+++|.+..++.|...+...+..+...+.+++....+.+|+.++.+.++|.+.. ...+ +..+.|+
T Consensus 245 ~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~---~~~~~i~ 318 (544)
T TIGR01842 245 LGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLP---EPEGHLS 318 (544)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCC---CCCCeEE
Confidence 122334578899999999999999999999999999999999999999999999876654211 1111 2356899
Q ss_pred EEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEc
Q 039402 1248 LLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIP 1327 (1496)
Q Consensus 1248 f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIp 1327 (1496)
++||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+.+++.+.+|++++++|
T Consensus 319 ~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 398 (544)
T TIGR01842 319 VENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLP 398 (544)
T ss_pred EEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEec
Confidence 99999999765567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEE
Q 039402 1328 QDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILML 1406 (1496)
Q Consensus 1328 Qdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiL 1406 (1496)
|||.+|+||+|+|+..++ +++|++++++++.++++++++++|+|+||.++|+|.+||||||||++||||++++|+||||
T Consensus 399 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ilil 478 (544)
T TIGR01842 399 QDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVL 478 (544)
T ss_pred CCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999998654 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhh
Q 039402 1407 DEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1407 DEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
|||||+||++|++.|.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|++|++
T Consensus 479 DEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 479 DEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred eCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999875 6799999999999999999999999999999999999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-67 Score=683.58 Aligned_cols=540 Identities=21% Similarity=0.242 Sum_probs=431.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 294 AMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRM 373 (1496)
Q Consensus 294 al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~i 373 (1496)
.+++.+|+.++...++.++..++..+.|++++.++|.+........ ....+..+++..++..++.....+.....+.++
T Consensus 154 ~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 232 (711)
T TIGR00958 154 GLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPA-LASAIFFMCLLSIASSVSAGLRGGSFNYTMARI 232 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778888889999999999999999999998864332111 111122223333344444444444555667777
Q ss_pred HHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 039402 374 RAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGIASLAALFGTV 452 (1496)
Q Consensus 374 r~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~~~ 452 (1496)
...++..+|+|.++.+....++.++|+++|++++|++.+.+++. .+..++...+.+++++++++..-+..+++.++.++
T Consensus 233 ~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~ 312 (711)
T TIGR00958 233 NLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLP 312 (711)
T ss_pred HHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 77788888999999999999999999999999999999998653 45556666666666666665544444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 453 IVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFW 532 (1496)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~ 532 (1496)
+...+...+.+..++..++.++..++..+...|.++|+++||.|++|+.+.+++.+..++..+..++.............
T Consensus 313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (711)
T TIGR00958 313 LVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTS 392 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677778888888888899999999999999999999999999998887766554433333322222222211111
Q ss_pred H--HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCC
Q 039402 533 G--APTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQP 610 (1496)
Q Consensus 533 ~--~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~ 610 (1496)
. ....+.++.++.+.+..+.++.|.+++++.++..+..|+..++..+..+.+++++.+|+.++++.++..+......+
T Consensus 393 ~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~ 472 (711)
T TIGR00958 393 VLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAP 472 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 1 11233445667788888999999999999999999999999999999999999999999999976544322111111
Q ss_pred CCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------
Q 039402 611 SGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------- 682 (1496)
Q Consensus 611 ~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------- 682 (1496)
......++++|++|+|+..+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.
T Consensus 473 -~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 473 -LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHH 551 (711)
T ss_pred -CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHH
Confidence 11234699999999997544568999999999999999999999999999999999999999999999983
Q ss_pred -----eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH
Q 039402 683 -----KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 756 (1496)
Q Consensus 683 -----~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 756 (1496)
++||+|+|++|++||||||.+|.+ .+++++.++++.++++++++.+|+|++|.+||+|.+||||||||++||||
T Consensus 552 ~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARA 631 (711)
T TIGR00958 552 YLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARA 631 (711)
T ss_pred HHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHH
Confidence 699999999999999999999965 67889999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchH
Q 039402 757 LYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFM 836 (1496)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~ 836 (1496)
++++|+|+|||||||+||+++++.+.+ ....+++|+|+|||+++.+..||+|++|++|+|++.|+|+|++++++.|.
T Consensus 632 Ll~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~ 708 (711)
T TIGR00958 632 LVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYK 708 (711)
T ss_pred HhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchH
Confidence 999999999999999999999988876 22347899999999999999999999999999999999999998877776
Q ss_pred HH
Q 039402 837 EL 838 (1496)
Q Consensus 837 ~~ 838 (1496)
++
T Consensus 709 ~l 710 (711)
T TIGR00958 709 HL 710 (711)
T ss_pred hc
Confidence 54
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-67 Score=682.19 Aligned_cols=538 Identities=22% Similarity=0.306 Sum_probs=446.3
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 289 VKLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQ 368 (1496)
Q Consensus 289 ~~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 368 (1496)
.+.++..++.+++.+....++.++..++.++.|++++.++|.+..... ....+.+++++++..++..++.....+...+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 135 KHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA-FETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666678889989989999999999999999999999998754332 1223334445555566677777777888889
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 039402 369 LGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWY-IHDPWLVLFEVALSILILYKNLGIASLAA 447 (1496)
Q Consensus 369 ~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~~~lL~~~lg~~~l~~ 447 (1496)
++.++...++..+|+|.++++... .+.++|++++++ +|++.+.+++.. +.......+.+++.+++++..-++.+++.
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 291 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVP 291 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999887 678999999999 799999987543 22233322233344444444455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 448 LFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAIS 527 (1496)
Q Consensus 448 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~ 527 (1496)
++++++.+++..++.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.+++.+..++..+...+........
T Consensus 292 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (694)
T TIGR03375 292 LVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLA 371 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777788888899999999999999999999999999999999999999999888877776666655554444
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 039402 528 SFVFWGAP--TFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDL 605 (1496)
Q Consensus 528 ~~~~~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 605 (1496)
..+..... ..+.++++|++.+.++.+|.|.+++++.++..+..|+..++..+..+.+++++++|+.++++.++..+..
T Consensus 372 ~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~ 451 (694)
T TIGR03375 372 TNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG 451 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 33322222 2233456788888899999999999999999999999999999999999999999999999876533221
Q ss_pred ccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC----
Q 039402 606 VEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---- 681 (1496)
Q Consensus 606 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g---- 681 (1496)
....+.......|+++|++|+|+. .++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 452 ~~~~~~~~~~~~I~~~~vsf~Y~~-~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~ 530 (694)
T TIGR03375 452 TRFLHRPRLQGEIEFRNVSFAYPG-QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIR 530 (694)
T ss_pred CCCCCCCCccceEEEEEEEEEeCC-CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhh
Confidence 111111112346999999999963 346799999999999999999999999999999999999999999999998
Q ss_pred ---------eeEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 682 ---------TKAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 682 ---------~~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
.++||||+|++|++||+|||.++.+ .+++++.++++.++++++++.+|+|++|.+||+|.+||||||||+
T Consensus 531 ~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRl 610 (694)
T TIGR03375 531 QIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAV 610 (694)
T ss_pred hCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHH
Confidence 3699999999999999999999986 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhc
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
+||||++++|+|+|||||||+||+++++.+.+ .+....+++|+|+||||++.++.||+|++|++|++++.|+++|+++.
T Consensus 611 alARall~~p~iliLDE~Ts~LD~~te~~i~~-~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 611 ALARALLRDPPILLLDEPTSAMDNRSEERFKD-RLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999999999999875 45666679999999999999999999999999999999999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-68 Score=722.59 Aligned_cols=514 Identities=17% Similarity=0.221 Sum_probs=426.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHH
Q 039402 966 TLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGA 1045 (1496)
Q Consensus 966 ~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~ 1045 (1496)
.+...+++++++..++.+++.++....+.+...+++.++++++++.|++|||..+.|++.+|++.|+..+...+...+..
T Consensus 98 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~ 177 (1466)
T PTZ00265 98 DIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFIT 177 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHH
Q 039402 1046 YAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESR 1125 (1496)
Q Consensus 1046 ~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~ 1125 (1496)
++..++.+++.++++++.+|.+.++++.++++++++..++.+..+...+......+...+.+.|++.|+.|||+|+.|++
T Consensus 178 ~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~ 257 (1466)
T PTZ00265 178 IFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKT 257 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHH
Confidence 99999999999999999999999887776666666666666666666666667777889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC--------CCCCHHHHHHHHHHHHHHHHH
Q 039402 1126 FRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFL-ISIPK--------GFIDPAIAGLAVTYGLTLNTL 1196 (1496)
Q Consensus 1126 f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~-~~~~~--------g~~~~g~~gl~l~y~l~l~~~ 1196 (1496)
+.+++.+..+.+.+..........+......++..+..++..++. ..... +.+++|.+...+.+.+.....
T Consensus 258 ~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~ 337 (1466)
T PTZ00265 258 ILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFM 337 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHH
Confidence 999999888877776655544443332233333222222222221 11122 235555444443333333333
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCC-CccceeeeEEeeCCcE
Q 039402 1197 LATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQM-PLVLQGISCTFPGGEK 1275 (1496)
Q Consensus 1197 l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vLk~iS~~I~~Gek 1275 (1496)
+..+...+..+.....|.+|+.+.++.+++.+.. ++ ....|..+.|+|+||+|+|+... .++|+|+||+|++||+
T Consensus 338 l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~-~~---~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~ 413 (1466)
T PTZ00265 338 LTIILPNITEYMKSLEATNSLYEIINRKPLVENN-DD---GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKT 413 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CC---CccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCE
Confidence 4455667788899999999999999876653211 11 11123345899999999997532 3699999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhcccCCCccEEEE-CCeeCCCCChHHHhcccEEEcccccccccchhhccCCC----------
Q 039402 1276 TGIVGRTGSGKSTLIQTLFRIVEPAAGQILI-DGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL---------- 1344 (1496)
Q Consensus 1276 vgIVGrTGSGKSTLl~~L~rl~ep~~G~I~I-DG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---------- 1344 (1496)
+||||+||||||||+++|.|+|+|++|+|+| ||.|+++++.+++|++|++|||||.||++||++||...
T Consensus 414 vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~ 493 (1466)
T PTZ00265 414 YAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEAL 493 (1466)
T ss_pred EEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchh
Confidence 9999999999999999999999999999999 57999999999999999999999999999999999742
Q ss_pred ------------------------------------------------CCCcHHHHHHHHHHcCCcHHHHhccCCccccc
Q 039402 1345 ------------------------------------------------EESTDEQIWEALDKCQLGDEVRKKEGKLDSKV 1376 (1496)
Q Consensus 1345 ------------------------------------------------~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v 1376 (1496)
.+.+|+++++|++++++++++.++|+|+||.+
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~v 573 (1466)
T PTZ00265 494 SNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLV 573 (1466)
T ss_pred ccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCcee
Confidence 13578999999999999999999999999999
Q ss_pred ccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcccCEEEEEe
Q 039402 1377 TENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVIDSDLVLLLN 1454 (1496)
Q Consensus 1377 ~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~~DrIlVL~ 1454 (1496)
+++|.+||||||||++|||||+++|+|||||||||+||+++++.|++.|++.. +++|+|+||||++++..||+|+||+
T Consensus 574 g~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~ 653 (1466)
T PTZ00265 574 GSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLS 653 (1466)
T ss_pred CCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999875 4799999999999999999999999
Q ss_pred CC-----------------------------------------------eEeEecChhhHhhcCCcHHHHHHHHHh
Q 039402 1455 HG-----------------------------------------------LIEEFDNPANLLENKSSSFSQLVAEYT 1483 (1496)
Q Consensus 1455 ~G-----------------------------------------------~IvE~g~p~~Ll~~~~s~F~~l~~~~~ 1483 (1496)
+| +|+|+|+|++|+++++|.|+.|++...
T Consensus 654 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 654 NRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred CCccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 96 599999999999877899999996653
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-69 Score=644.86 Aligned_cols=464 Identities=27% Similarity=0.400 Sum_probs=359.5
Q ss_pred cEEEEeeEEEecCCCC-CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCC----ccEEEEcCe---------
Q 039402 617 ALDIVDGNFSWDISSH-NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI----SGTLKLCGT--------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~----~G~i~~~g~--------- 682 (1496)
.++++|++..|...+. .++++||||++.+||.+||+|+|||||||+.++|.|.+++. +|+|.++|+
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999975533 25999999999999999999999999999999999999987 899999883
Q ss_pred --------eEEEccCCcc-CC--CcHHHHhc----cCCCCC-HHHHH---HHHHHhchhhHHHhccCCCcccccCCCCCC
Q 039402 683 --------KAYVAQSPWI-QS--GKIEDNIL----FGKEMN-RERYN---AVLDACSLKKDLEILSFGDQTVIGERGINL 743 (1496)
Q Consensus 683 --------~~yv~Q~~~i-~~--~ti~eNI~----~g~~~~-~~~~~---~v~~~~~l~~d~~~l~~g~~t~ig~~g~~L 743 (1496)
+||++|+|+- +| .||.+-|. .....+ ++..+ +.++..++. +.... +..+.+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~-------~~~~~--~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLP-------DPERR--DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCC-------Chhhh--ccCCccc
Confidence 6999999862 33 35554443 333222 22222 233333332 22222 5678999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh--CCcEEEEEccCcCcccc-CCEEEEEeCCeEE
Q 039402 744 SGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL--SSKTVIYVTHQVEFLPA-ADLILVMKDGKIT 820 (1496)
Q Consensus 744 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 820 (1496)
||||||||.||+||..+|+++|+||||+|||+.++.+|.+. ++.+. .|.++|+||||++.+.+ ||+|+||++|+++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~l-lk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL-LKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHH-HHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999864 44443 48999999999999876 9999999999999
Q ss_pred EecChHHHHhcCcc-hHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccchh
Q 039402 821 QAGKYNDLINSGTD-FMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLV 899 (1496)
Q Consensus 821 ~~G~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 899 (1496)
+.|+.++++++... |.+.+
T Consensus 235 E~G~~~~i~~~p~hpYT~~L------------------------------------------------------------ 254 (539)
T COG1123 235 ETGPTEEILSNPQHPYTRGL------------------------------------------------------------ 254 (539)
T ss_pred EecCHHHHHhccCCcccHHH------------------------------------------------------------
Confidence 99999998754210 00000
Q ss_pred HHHHHhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHH
Q 039402 900 QEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSS 979 (1496)
Q Consensus 900 ~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~ 979 (1496)
.+ ..|.....
T Consensus 255 -------------------l~-------------------------------------a~p~~~~~-------------- 264 (539)
T COG1123 255 -------------------LA-------------------------------------AVPRLGDE-------------- 264 (539)
T ss_pred -------------------Hh-------------------------------------hCCCcccc--------------
Confidence 00 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 039402 980 FCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAV 1059 (1496)
Q Consensus 980 ~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~ 1059 (1496)
T Consensus 265 -------------------------------------------------------------------------------- 264 (539)
T COG1123 265 -------------------------------------------------------------------------------- 264 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhh
Q 039402 1060 MSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSR 1139 (1496)
Q Consensus 1060 ~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~ 1139 (1496)
T Consensus 265 -------------------------------------------------------------------------------- 264 (539)
T COG1123 265 -------------------------------------------------------------------------------- 264 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 039402 1140 PTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQ 1219 (1496)
Q Consensus 1140 ~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~ 1219 (1496)
..
T Consensus 265 -----------------------------------~~------------------------------------------- 266 (539)
T COG1123 265 -----------------------------------KI------------------------------------------- 266 (539)
T ss_pred -----------------------------------cc-------------------------------------------
Confidence 00
Q ss_pred hhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCC---------CCCccceeeeEEeeCCcEEEEEcCCCCCHHHHH
Q 039402 1220 YTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAP---------QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLI 1290 (1496)
Q Consensus 1220 ~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~---------~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl 1290 (1496)
...+.+. +. +...-++++|++.+|.. ....+++||||++++||.+||||.||||||||.
T Consensus 267 -~~~~~~~--------~~---~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTla 334 (539)
T COG1123 267 -IRLPRRG--------PL---RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLA 334 (539)
T ss_pred -ccccccc--------cc---ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHH
Confidence 0000000 00 01225889999999974 124689999999999999999999999999999
Q ss_pred HHHhcccCCCccEEEECCee--CCCCChHHHhcccEEEccccccc---ccchhhccC-CCCCC-------cHHHHHHHHH
Q 039402 1291 QTLFRIVEPAAGQILIDGID--ISLIGLHDLRSRLSIIPQDPVMF---EGTVRSNLD-PLEES-------TDEQIWEALD 1357 (1496)
Q Consensus 1291 ~~L~rl~ep~~G~I~IDG~d--I~~i~l~~LR~~i~iIpQdp~LF---~gTIR~NLd-p~~~~-------sd~eI~~aL~ 1357 (1496)
++|+|+++|++|+|.++|.| .+.-....+|+++-+|.|||+-. ..||+++|. |...+ ..+.+-+.|+
T Consensus 335 r~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~ 414 (539)
T COG1123 335 RILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLE 414 (539)
T ss_pred HHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHH
Confidence 99999999999999999977 33333566888999999999732 459999995 44311 2234777899
Q ss_pred HcCCcH-HHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEE
Q 039402 1358 KCQLGD-EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTV 1434 (1496)
Q Consensus 1358 ~~~L~~-~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TV 1434 (1496)
+++|.+ +..+.| ..||||||||+||||||..+|++||+|||||+||+-+.+.|.+.|.+.-+ +.|.
T Consensus 415 ~VgL~~~~l~ryP-----------~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~ 483 (539)
T COG1123 415 LVGLPPEFLDRYP-----------HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTY 483 (539)
T ss_pred HcCCCHHHHhcCc-----------hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEE
Confidence 999986 344444 46799999999999999999999999999999999999999999887543 6899
Q ss_pred EEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHH
Q 039402 1435 LTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481 (1496)
Q Consensus 1435 I~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~ 1481 (1496)
|+|+|++..+.. ||||.||++|+|||.|+.+++.+++...|.+...+
T Consensus 484 lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 484 LFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred EEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHH
Confidence 999999999998 99999999999999999999999988777765544
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-66 Score=673.78 Aligned_cols=543 Identities=22% Similarity=0.315 Sum_probs=440.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 291 LIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLG 370 (1496)
Q Consensus 291 l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~ 370 (1496)
.++..++.+++.++...++.++..++.++.|++++.++|.+..... ....+.+++++++..++..++.....+...+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (708)
T TIGR01193 146 KFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM-MGTLGIISIGLIIAYIIQQILSYIQIFLLNVLG 224 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566778888888888999999999999999999997754332 222233444455556667777777778888999
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039402 371 IRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWY-IHDPWLVLFEVALSILILYKNLGIASLAALF 449 (1496)
Q Consensus 371 ~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~ 449 (1496)
.++...++..+|+|.++++....++.++|+++++++ |++.+.+++.. +.......+.+++.+++++..-++.+++.++
T Consensus 225 ~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 303 (708)
T TIGR01193 225 QRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLL 303 (708)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999998 99999987543 2222222233333444444444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 450 GTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSF 529 (1496)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~ 529 (1496)
++++...+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.+++.+..++..+...+..........
T Consensus 304 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (708)
T TIGR01193 304 SIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQA 383 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666677788888999999999999999999999999999999999999888877655544443333332222222
Q ss_pred HHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 039402 530 VFWGA--PTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVE 607 (1496)
Q Consensus 530 ~~~~~--p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~ 607 (1496)
+.... ...+.++++|++.+..+.+|.|.++++..++..+..|+..+...+..+.+++++++|+.++++.++..+....
T Consensus 384 ~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~ 463 (708)
T TIGR01193 384 IKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKK 463 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence 11111 1234456778888889999999999999999999999999999999999999999999999976543322111
Q ss_pred CCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----
Q 039402 608 KQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----- 682 (1496)
Q Consensus 608 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~----- 682 (1496)
..+.......|+++|++|+|+ +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.
T Consensus 464 ~~~~~~~~~~I~~~~vsf~y~--~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~ 541 (708)
T TIGR01193 464 RTELNNLNGDIVINDVSYSYG--YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI 541 (708)
T ss_pred ccCCCCCCCcEEEEEEEEEcC--CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHc
Confidence 011112234699999999996 2468999999999999999999999999999999999999999999999984
Q ss_pred --------eEEEccCCccCCCcHHHHhccCC--CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 683 --------KAYVAQSPWIQSGKIEDNILFGK--EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 683 --------~~yv~Q~~~i~~~ti~eNI~~g~--~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
++||||+|++|++||+|||.+|. ..+++++.++++.++++++++.+|.|++|.+||+|.+|||||||||+
T Consensus 542 ~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRia 621 (708)
T TIGR01193 542 DRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIA 621 (708)
T ss_pred CHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHH
Confidence 69999999999999999999983 47788999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
||||++++|+|+|||||||+||+++++++.+.+. . .+++|+|+|||+++.+..||+|++|++|++++.|+++|+++.+
T Consensus 622 lARall~~p~iliLDE~Ts~LD~~te~~i~~~L~-~-~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~ 699 (708)
T TIGR01193 622 LARALLTDSKVLILDESTSNLDTITEKKIVNNLL-N-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRN 699 (708)
T ss_pred HHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH-H-hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcC
Confidence 9999999999999999999999999999876654 3 3789999999999999999999999999999999999999888
Q ss_pred cchHHHH
Q 039402 833 TDFMELV 839 (1496)
Q Consensus 833 ~~~~~~~ 839 (1496)
+.|.+++
T Consensus 700 ~~y~~l~ 706 (708)
T TIGR01193 700 GFYASLI 706 (708)
T ss_pred CcHHHHh
Confidence 8787764
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-65 Score=654.27 Aligned_cols=545 Identities=19% Similarity=0.231 Sum_probs=441.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 292 IKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGI 371 (1496)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~ 371 (1496)
++.+++.+++.++...++.++..++..+.|++++.+++.+..... ......++.++++..++..++.....+...+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 94 (582)
T PRK11176 16 LWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD-RSVLKWMPLVVIGLMILRGITSFISSYCISWVSG 94 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777778877788888888888999999999987754321 1112222333334455566666666667788889
Q ss_pred HHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039402 372 RMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGIASLAALFG 450 (1496)
Q Consensus 372 ~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~ 450 (1496)
++...++..+|+|.++++.....+.+.|++++++++|++++.+++. .+..++..++.+++.+++++..-++.+++.+++
T Consensus 95 ~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 174 (582)
T PRK11176 95 KVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVI 174 (582)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998643 445556666666666666655545545555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 451 TVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFV 530 (1496)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~ 530 (1496)
+++..++...+.+..++..++.++..++......|.++|+++||.+++|+.+.+++++.-++-.+...+..........+
T Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (582)
T PRK11176 175 APIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPI 254 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566677788888888899999999999999999999999999999988888766554444443333333322222
Q ss_pred HHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccC
Q 039402 531 FWGA--PTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEK 608 (1496)
Q Consensus 531 ~~~~--p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~ 608 (1496)
.... -..+.++.++.+.+..+.+++|.+.++..++..+..|+..+...+..+.+++.+++|+.++++.++..+.....
T Consensus 255 ~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~ 334 (582)
T PRK11176 255 IQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRV 334 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcC
Confidence 1111 12334455677777788999999999999999999999999999999999999999999999765442211111
Q ss_pred CCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------
Q 039402 609 QPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------ 682 (1496)
Q Consensus 609 ~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------ 682 (1496)
.......++++|++|+|+. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 335 --~~~~~~~i~~~~vsf~y~~-~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~ 411 (582)
T PRK11176 335 --IERAKGDIEFRNVTFTYPG-KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYT 411 (582)
T ss_pred --CCCCCCeEEEEEEEEecCC-CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcC
Confidence 1112236999999999963 2468999999999999999999999999999999999999999999999984
Q ss_pred -------eEEEccCCccCCCcHHHHhccCCC--CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 -------KAYVAQSPWIQSGKIEDNILFGKE--MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 -------~~yv~Q~~~i~~~ti~eNI~~g~~--~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
++||||+|.+|++||+|||.+|.+ .++++++++++.++++++++.+|+|++|.+|++|.+||||||||++|
T Consensus 412 ~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~L 491 (582)
T PRK11176 412 LASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAI 491 (582)
T ss_pred HHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHH
Confidence 499999999999999999999863 78999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCc
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGT 833 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~ 833 (1496)
|||++++|+|+||||||||||+++++.+++. +....+++|+|+|||+++.++.||+|++|++|++++.|+++++++.++
T Consensus 492 ARall~~~~ililDEptsaLD~~t~~~i~~~-l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~ 570 (582)
T PRK11176 492 ARALLRDSPILILDEATSALDTESERAIQAA-LDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNG 570 (582)
T ss_pred HHHHHhCCCEEEEECccccCCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 9999999999999999999999999998754 455567899999999999999999999999999999999999999888
Q ss_pred chHHHHHH
Q 039402 834 DFMELVGA 841 (1496)
Q Consensus 834 ~~~~~~~~ 841 (1496)
.|+++...
T Consensus 571 ~y~~l~~~ 578 (582)
T PRK11176 571 VYAQLHKM 578 (582)
T ss_pred hHHHHHHH
Confidence 88887653
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-65 Score=650.61 Aligned_cols=544 Identities=21% Similarity=0.257 Sum_probs=450.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 292 IKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGI 371 (1496)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~ 371 (1496)
++.+++.+++.+++..++.++..++....|++++.+++....... ....+.+++++++..++..++.....+...+.+.
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD-RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSN 83 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788889999999999999999999999999886543321 1222333434555556667777777778889999
Q ss_pred HHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039402 372 RMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGIASLAALFG 450 (1496)
Q Consensus 372 ~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~ 450 (1496)
++...++..+|+|.++.+.....+.+.|+++|+++.|++++.+++. .+..++...+.+++++++++..-++.+++.+++
T Consensus 84 ~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~ 163 (571)
T TIGR02203 84 KVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVM 163 (571)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998754 455556556666666666655555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 451 TVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFV 530 (1496)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~ 530 (1496)
+++.+.+...+.+..++..++..+..+++.+.++|.++|+++||.++.|+.+.+++.+..++..+...+..........+
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (571)
T TIGR02203 164 LPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPI 243 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677778888889999999999999999999999999999999999998888877666555554444433333333
Q ss_pred HHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccC
Q 039402 531 FWGAP--TFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEK 608 (1496)
Q Consensus 531 ~~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~ 608 (1496)
..... ..+.++.++.+.+..+.+|+|.++++..++..+..|+..+...+..+.+++++.+|+.++++.++..+....
T Consensus 244 ~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~- 322 (571)
T TIGR02203 244 TQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR- 322 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-
Confidence 22222 223445667777888999999999999999999999999999999999999999999999976554322111
Q ss_pred CCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------
Q 039402 609 QPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------ 682 (1496)
Q Consensus 609 ~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------ 682 (1496)
+.......++++|++|+|+.. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 323 -~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~ 400 (571)
T TIGR02203 323 -AIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT 400 (571)
T ss_pred -CCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC
Confidence 111123469999999999743 468999999999999999999999999999999999999999999999983
Q ss_pred -------eEEEccCCccCCCcHHHHhccCC--CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 -------KAYVAQSPWIQSGKIEDNILFGK--EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 -------~~yv~Q~~~i~~~ti~eNI~~g~--~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
++||||+|++|++|++|||.++. +.+++++.++++.|++++++..+|+|.+|.+|++|.+||||||||++|
T Consensus 401 ~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaL 480 (571)
T TIGR02203 401 LASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAI 480 (571)
T ss_pred HHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHH
Confidence 69999999999999999999996 488999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCc
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGT 833 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~ 833 (1496)
|||++++|+|+|||||||+||+++++++.+. +....+++|+|+|||+.+.+..||+|++|++|++++.|+++++++.+.
T Consensus 481 ARall~~~~illLDEpts~LD~~~~~~i~~~-L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~ 559 (571)
T TIGR02203 481 ARALLKDAPILILDEATSALDNESERLVQAA-LERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNG 559 (571)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCC
Confidence 9999999999999999999999999999654 455567899999999999999999999999999999999999998777
Q ss_pred chHHHHH
Q 039402 834 DFMELVG 840 (1496)
Q Consensus 834 ~~~~~~~ 840 (1496)
.|.++..
T Consensus 560 ~~~~~~~ 566 (571)
T TIGR02203 560 LYAQLHN 566 (571)
T ss_pred HHHHHHH
Confidence 7776543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=673.43 Aligned_cols=485 Identities=25% Similarity=0.364 Sum_probs=358.4
Q ss_pred ccEEEEeeEEEecCCC-CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC-------------
Q 039402 616 TALDIVDGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------- 681 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g------------- 681 (1496)
..++++|++++|.... ..++|+||||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3689999999996322 34799999999999999999999999999999999999999999998765
Q ss_pred --------------eeEEEccCC--ccC-CCcHHHHhccCCC----CCHH----HHHHHHHHhchhhHHHhccCCCcccc
Q 039402 682 --------------TKAYVAQSP--WIQ-SGKIEDNILFGKE----MNRE----RYNAVLDACSLKKDLEILSFGDQTVI 736 (1496)
Q Consensus 682 --------------~~~yv~Q~~--~i~-~~ti~eNI~~g~~----~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~i 736 (1496)
.++||+|+| .++ ..||+|||.++.. .+.. +..++++..++.+ .....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--------~~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPE--------AQTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC--------hhhHH
Confidence 379999998 354 4699999987531 2221 2223333333310 01234
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-C-CcEEEEEccCcCcccc-CCEEEE
Q 039402 737 GERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-S-SKTVIYVTHQVEFLPA-ADLILV 813 (1496)
Q Consensus 737 g~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~d~i~~ 813 (1496)
.+...+|||||||||+|||||+.+|++|||||||++||+.+...+.+ +++.+. + |+|+|+|||+++.+.. ||+|++
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 57788999999999999999999999999999999999999888875 454443 3 8999999999999865 999999
Q ss_pred EeCCeEEEecChHHHHhcCc-chHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhh
Q 039402 814 MKDGKITQAGKYNDLINSGT-DFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVA 892 (1496)
Q Consensus 814 l~~G~i~~~G~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1496)
|++|++++.|+++++..... .|.+ .... . .... ..
T Consensus 242 l~~G~i~~~g~~~~~~~~~~~~~~~-------~l~~--~-----------------------------~~~~--~~---- 277 (623)
T PRK10261 242 MYQGEAVETGSVEQIFHAPQHPYTR-------ALLA--A-----------------------------VPQL--GA---- 277 (623)
T ss_pred eeCCeecccCCHHHhhcCCCChhhh-------hhhh--c-----------------------------cCcc--cc----
Confidence 99999999999877643210 0000 0000 0 0000 00
Q ss_pred hhccchhHHHHHhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHH
Q 039402 893 VSKGQLVQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYV 972 (1496)
Q Consensus 893 ~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~ 972 (1496)
..|. ..
T Consensus 278 ------------~~~~-------------------------------------------------~~------------- 283 (623)
T PRK10261 278 ------------MKGL-------------------------------------------------DY------------- 283 (623)
T ss_pred ------------cccc-------------------------------------------------cC-------------
Confidence 0000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHH
Q 039402 973 ALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIR 1052 (1496)
Q Consensus 973 ~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~ 1052 (1496)
| ++ .+.
T Consensus 284 ---------------------------------------~---------~~---------------~~~----------- 289 (623)
T PRK10261 284 ---------------------------------------P---------RR---------------FPL----------- 289 (623)
T ss_pred ---------------------------------------C---------cc---------------ccc-----------
Confidence 0 00 000
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHH
Q 039402 1053 ILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMK 1132 (1496)
Q Consensus 1053 ~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~ 1132 (1496)
.+
T Consensus 290 ------------------------------------------------~~------------------------------ 291 (623)
T PRK10261 290 ------------------------------------------------IS------------------------------ 291 (623)
T ss_pred ------------------------------------------------cc------------------------------
Confidence 00
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 039402 1133 LMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKII 1212 (1496)
Q Consensus 1133 ~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~ 1212 (1496)
. .. ...
T Consensus 292 ---~-~~----------------------------------~~~------------------------------------ 297 (623)
T PRK10261 292 ---L-EH----------------------------------PAK------------------------------------ 297 (623)
T ss_pred ---c-cc----------------------------------ccc------------------------------------
Confidence 0 00 000
Q ss_pred HHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCC---------CCccceeeeEEeeCCcEEEEEcCCC
Q 039402 1213 SVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQ---------MPLVLQGISCTFPGGEKTGIVGRTG 1283 (1496)
Q Consensus 1213 sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~---------~~~vLk~iS~~I~~GekvgIVGrTG 1283 (1496)
..+.+.+ . ..+ +...-++++||+++|... ...+|+||||+|++||++||+|+||
T Consensus 298 ---------~~~~~~~----~-~~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nG 360 (623)
T PRK10261 298 ---------QEPPIEQ----D-TVV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESG 360 (623)
T ss_pred ---------cCccccc----c-ccc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCC
Confidence 0000000 0 000 011259999999999621 1359999999999999999999999
Q ss_pred CCHHHHHHHHhcccCCCccEEEECCeeCCCCChH---HHhcccEEEcccc--ccccc-chhhccCC-C---CCC----cH
Q 039402 1284 SGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH---DLRSRLSIIPQDP--VMFEG-TVRSNLDP-L---EES----TD 1349 (1496)
Q Consensus 1284 SGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR~~i~iIpQdp--~LF~g-TIR~NLdp-~---~~~----sd 1349 (1496)
||||||+++|.|+.+|++|+|.+||.++...+.. .+|++|++|||+| .++.. |+++|+.. . +.. .+
T Consensus 361 sGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~ 440 (623)
T PRK10261 361 SGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAA 440 (623)
T ss_pred CCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999999999999999999999877643 4678899999998 36654 99999852 1 111 12
Q ss_pred HHHHHHHHHcCCc-HHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHh
Q 039402 1350 EQIWEALDKCQLG-DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQH 1428 (1496)
Q Consensus 1350 ~eI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~ 1428 (1496)
+++.+.|+.+++. +.....| ..||||||||++|||||+.+|+||||||||++||..+.+.|.+.|++.
T Consensus 441 ~~~~~~L~~~gL~~~~~~~~~-----------~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l 509 (623)
T PRK10261 441 ARVAWLLERVGLLPEHAWRYP-----------HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDL 509 (623)
T ss_pred HHHHHHHHHcCCCHHHhhCCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4577888888885 3333333 468999999999999999999999999999999999999999999886
Q ss_pred cC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCcHHH-HHHHH
Q 039402 1429 FS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFS-QLVAE 1481 (1496)
Q Consensus 1429 f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~-~l~~~ 1481 (1496)
.+ +.|||+|||+++.+.. ||||+||++|+|+|.|++++++.++...|. .++..
T Consensus 510 ~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~~ 566 (623)
T PRK10261 510 QRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMAA 566 (623)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHhh
Confidence 43 6899999999999976 999999999999999999999976655454 45543
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=646.61 Aligned_cols=543 Identities=20% Similarity=0.237 Sum_probs=428.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 292 IKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEG-YVLVSAFCVAKLVECLCQRFRVFRLQQLG 370 (1496)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g-~~l~~~l~~~~~~~~l~~~~~~~~~~~~~ 370 (1496)
+..+++.+++.++...++.++..++..+.|+++..++|.+.......... ..+++++++..++..++.....+...+.+
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (592)
T PRK10790 14 LLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAA 93 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667778888888899999999999999999999764322211111 12233344445566677777777888899
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039402 371 IRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYI-HDPWLVLFEVALSILILYKNLGIASLAALF 449 (1496)
Q Consensus 371 ~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~-~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~ 449 (1496)
.++...++..+|+|.++++.....+.++|+++|++++|++.+.+++... ..+....+.+++++++++...++.+++.++
T Consensus 94 ~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~ 173 (592)
T PRK10790 94 VGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIM 173 (592)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875543 333333333333333333322333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 039402 450 GTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAI--- 526 (1496)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~--- 526 (1496)
++++.+.+.....+..++..++.++..++..+...|.++|+++||.|+.|+.+.+++.+..++..+...+.......
T Consensus 174 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (592)
T PRK10790 174 IFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLR 253 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455566667777777888888899999999999999999999999999877655444332222221111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 039402 527 -SSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDL 605 (1496)
Q Consensus 527 -~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 605 (1496)
...+......++ ++.++.+ ...+.++.|.+++++.++..+..|+..++..+..+.+++.+.+||.++++.++.+...
T Consensus 254 ~~~~~~~~~~~~~-~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 331 (592)
T PRK10790 254 PLLSLFSALILCG-LLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN 331 (592)
T ss_pred HHHHHHHHHHHHH-HHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 111111111111 1122223 4577899999999999999999999999999999999999999999999765432211
Q ss_pred ccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe---
Q 039402 606 VEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--- 682 (1496)
Q Consensus 606 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--- 682 (1496)
. ..+ .....++++|++|+|+. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 332 ~-~~~--~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~ 406 (592)
T PRK10790 332 D-DRP--LQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS 406 (592)
T ss_pred C-ccC--CCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhh
Confidence 1 111 12346999999999963 357999999999999999999999999999999999999999999999984
Q ss_pred ----------eEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 683 ----------KAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 683 ----------~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
++||||+|++|++||+|||.+|.+.++++..++++.++++++++.+|+|.+|.+||+|.+||||||||++
T Consensus 407 ~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia 486 (592)
T PRK10790 407 SLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486 (592)
T ss_pred hCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 6999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
||||++++|+|+|||||||+||+++++.+.+ .+....+++|+|+|||+++.++.||+|++|++|++++.|+++|+++.+
T Consensus 487 lARaLl~~~~illlDEpts~LD~~t~~~i~~-~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~ 565 (592)
T PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQQ-ALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565 (592)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999998865 455566789999999999999999999999999999999999999998
Q ss_pred cchHHHHHHh
Q 039402 833 TDFMELVGAH 842 (1496)
Q Consensus 833 ~~~~~~~~~~ 842 (1496)
+.|.++...+
T Consensus 566 ~~y~~l~~~~ 575 (592)
T PRK10790 566 GRYWQMYQLQ 575 (592)
T ss_pred CHHHHHHHHH
Confidence 8999887644
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-65 Score=645.12 Aligned_cols=514 Identities=18% Similarity=0.139 Sum_probs=401.3
Q ss_pred HHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 039402 933 AQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAP 1012 (1496)
Q Consensus 933 ~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap 1012 (1496)
+.++..+..++.++.++.+.+... ......+..++++.++..++.++..++....+.+....++.++++++++.|
T Consensus 26 ~~~~~~~~~~~~~~~i~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~ 100 (555)
T TIGR01194 26 LGLAGGLAIIALLASINNAIHEEN-----FLGQGSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAP 100 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344445555666666665543110 000112233455566667788888888999999999999999999999999
Q ss_pred cccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1013 MSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSAREL 1092 (1496)
Q Consensus 1013 ~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l 1092 (1496)
+.||++.++|++++|+++|++.++..+.. +..++..++.+++.++++++.+|.+.++++.++++.+.+..++.+..++.
T Consensus 101 ~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~ 179 (555)
T TIGR01194 101 IEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKF 179 (555)
T ss_pred HHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754 66777778888888888999999988876665555555444444444455
Q ss_pred HHHHHHhhchHHHHHHHhhcchHHHHHhccHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1093 SRLVGVCKAPVIQHFAETVSGSTTIRSFDQES--RFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFL 1170 (1496)
Q Consensus 1093 ~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~--~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~ 1170 (1496)
.+......+.+.+++.|.+.|+.+||+|+.++ ...+++.+..+.+.+................+++..+...+.+ .
T Consensus 180 ~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 257 (555)
T TIGR01194 180 FHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCAL--F 257 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 55555667789999999999999999999954 4456666666655554443222222211112222211111111 1
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCc--cC-CCC--CCCCCCcce
Q 039402 1171 ISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAI--EE-SRP--NDSWPSHGK 1245 (1496)
Q Consensus 1171 ~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~--~~-~~~--~~~wp~~g~ 1245 (1496)
+....+.++.|.+...+.|...+..++..+...+.+++....|.+|+.++.+.+.+++... ++ ... .+.....+.
T Consensus 258 ~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (555)
T TIGR01194 258 AAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDS 337 (555)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCce
Confidence 1112367888888888899999999999999999999999999999999976432221110 00 000 011123578
Q ss_pred EEEEeEEeEeCCC---CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1246 IDLLDLQVRYAPQ---MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~---~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
|+|+||+|+|++. .+++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+++|++
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~ 417 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhh
Confidence 9999999999753 2369999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 039402 1323 LSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402 (1496)
Q Consensus 1323 i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ 1402 (1496)
++++||||++|++|+|+|+.| +.+|+++++++++++++++++++|+|+||. .+||||||||++||||++++|+
T Consensus 418 i~~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ 490 (555)
T TIGR01194 418 FSAIFADFHLFDDLIGPDEGE--HASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRP 490 (555)
T ss_pred CcEEccChhhhhhhhhccccc--chhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999753 578999999999999999999999999994 7899999999999999999999
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHH-h-cCCcEEEEEccCcchhcccCEEEEEeCCeEeEe
Q 039402 1403 ILMLDEATASVDTATDNLIQQTLRQ-H-FSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEF 1461 (1496)
Q Consensus 1403 ILiLDEaTsslD~~Td~~Iq~~I~~-~-f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~ 1461 (1496)
|||||||||+||++|++.|++.+.+ . .+++|+|+||||++++..||+|+||++|+|+|.
T Consensus 491 ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 491 ILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999987643 2 368999999999999999999999999999985
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-64 Score=643.70 Aligned_cols=550 Identities=21% Similarity=0.266 Sum_probs=437.1
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 289 VKLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQ 368 (1496)
Q Consensus 289 ~~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 368 (1496)
.+.++.+++.+++.++...++.++..++.++.|++++.++|.+-...... ....++..+++..++..+......+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 6 LAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSG-LLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777888888888999999999999999999999743222111 11222333333444555666667778889
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 039402 369 LGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGIASLAA 447 (1496)
Q Consensus 369 ~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~ 447 (1496)
++.++...++..+|+|.++++....++.+.|++++++++|++.+.+++. .+..++...+.+++++++++...++.+++.
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999988889999999999999999988753 344444444455555444443333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 448 LFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAIS 527 (1496)
Q Consensus 448 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~ 527 (1496)
++.+++...+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.+++.+..++..+...+........
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444557777888888899999999999999999999999999999998888776665444433333322222
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 039402 528 SFVFW--GAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDL 605 (1496)
Q Consensus 528 ~~~~~--~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 605 (1496)
..+.. .....+.++.++++.+..+.++.|.++++..++..+..|+..++..+..+.+++++++|+.++++.++..+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 22211 1122344455677888889999999999999999999999999999999999999999999999765432111
Q ss_pred ccC-CCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC---
Q 039402 606 VEK-QPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--- 681 (1496)
Q Consensus 606 ~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g--- 681 (1496)
... .........++++|++|+|+..+++++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 325 ~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i 404 (576)
T TIGR02204 325 AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL 404 (576)
T ss_pred CCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEH
Confidence 111 1111122469999999999754346899999999999999999999999999999999999999999999998
Q ss_pred ----------eeEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHH
Q 039402 682 ----------TKAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750 (1496)
Q Consensus 682 ----------~~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 750 (1496)
.++||||+|++|++||+|||.+|.+ .++++..++++.+++.++++.+|.|++|.+|++|.+||||||||
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qr 484 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQR 484 (576)
T ss_pred HhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHH
Confidence 3699999999999999999999875 57888999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHh
Q 039402 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
++||||++++|+++|||||||+||+++++.+++ .+....+++|+|+|||+++.++.+|+|++|++|++++.|+++++.+
T Consensus 485 l~laRal~~~~~ililDEpts~lD~~~~~~i~~-~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 485 IAIARAILKDAPILLLDEATSALDAESEQLVQQ-ALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHHHHHhCCCeEEEeCcccccCHHHHHHHHH-HHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 999999999999999999999999999888765 4555567999999999999999999999999999999999999998
Q ss_pred cCcchHHHHH
Q 039402 831 SGTDFMELVG 840 (1496)
Q Consensus 831 ~~~~~~~~~~ 840 (1496)
.++.|.++..
T Consensus 564 ~~~~~~~l~~ 573 (576)
T TIGR02204 564 KGGLYARLAR 573 (576)
T ss_pred cCChHHHHHh
Confidence 8877877653
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-67 Score=660.17 Aligned_cols=449 Identities=25% Similarity=0.413 Sum_probs=346.4
Q ss_pred cEEEEeeEEEecCC-CCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC-----CccEEEEcC---------
Q 039402 617 ALDIVDGNFSWDIS-SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCG--------- 681 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~i~~~g--------- 681 (1496)
.++++|++++|+.. ..+++|+|+||++++||+++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 58999999999632 135799999999999999999999999999999999999986 799998876
Q ss_pred --------eeEEEccCCc--cC-CCcHHHHhccCC----CCCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCC
Q 039402 682 --------TKAYVAQSPW--IQ-SGKIEDNILFGK----EMNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGIN 742 (1496)
Q Consensus 682 --------~~~yv~Q~~~--i~-~~ti~eNI~~g~----~~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 742 (1496)
.++|++|+|. ++ ..|+++|+.++. ..+. ++..++++.+++.+.. ....++..+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 2699999985 33 358999986431 1222 2233344444442110 123567789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCcccc-CCEEEEEeCCeE
Q 039402 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPA-ADLILVMKDGKI 819 (1496)
Q Consensus 743 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 819 (1496)
|||||||||+|||||+.+|+++||||||++||+.+...+.+ ++..+ . .++|+|+|||+++.+.. ||+|++|++|++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQ-LLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999998875 44443 3 38999999999999865 999999999999
Q ss_pred EEecChHHHHhcCcchHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccchh
Q 039402 820 TQAGKYNDLINSGTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLV 899 (1496)
Q Consensus 820 ~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 899 (1496)
++.|+++++..... .. .
T Consensus 236 ~~~g~~~~~~~~~~-----------------------------------------------------~~-~--------- 252 (529)
T PRK15134 236 VEQNRAATLFSAPT-----------------------------------------------------HP-Y--------- 252 (529)
T ss_pred EEeCCHHHHhhCCC-----------------------------------------------------CH-H---------
Confidence 99887655421000 00 0
Q ss_pred HHHHHhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHH
Q 039402 900 QEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSS 979 (1496)
Q Consensus 900 ~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~ 979 (1496)
.+ .++.. .
T Consensus 253 ---~~-----------~~~~~--------------------------------------~-------------------- 260 (529)
T PRK15134 253 ---TQ-----------KLLNS--------------------------------------E-------------------- 260 (529)
T ss_pred ---HH-----------HHHHh--------------------------------------C--------------------
Confidence 00 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 039402 980 FCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAV 1059 (1496)
Q Consensus 980 ~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~ 1059 (1496)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhh
Q 039402 1060 MSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSR 1139 (1496)
Q Consensus 1060 ~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~ 1139 (1496)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 039402 1140 PTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQ 1219 (1496)
Q Consensus 1140 ~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~ 1219 (1496)
. +
T Consensus 261 -----------------------------------~----------------------------------------~--- 262 (529)
T PRK15134 261 -----------------------------------P----------------------------------------S--- 262 (529)
T ss_pred -----------------------------------c----------------------------------------c---
Confidence 0 0
Q ss_pred hhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCC---------CCCccceeeeEEeeCCcEEEEEcCCCCCHHHHH
Q 039402 1220 YTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAP---------QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLI 1290 (1496)
Q Consensus 1220 ~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~---------~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl 1290 (1496)
.++..+ ++ +....|+++|++++|.. +...+|+|+||+|++||++||+|+||||||||+
T Consensus 263 ---~~~~~~-------~~---~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl 329 (529)
T PRK15134 263 ---GDPVPL-------PE---PASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTG 329 (529)
T ss_pred ---cccccc-------CC---CCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHH
Confidence 000000 00 00114899999999952 124699999999999999999999999999999
Q ss_pred HHHhcccCCCccEEEECCeeCCCCChHH---HhcccEEEcccc--cccc-cchhhccCC-C--C--CC----cHHHHHHH
Q 039402 1291 QTLFRIVEPAAGQILIDGIDISLIGLHD---LRSRLSIIPQDP--VMFE-GTVRSNLDP-L--E--ES----TDEQIWEA 1355 (1496)
Q Consensus 1291 ~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR~~i~iIpQdp--~LF~-gTIR~NLdp-~--~--~~----sd~eI~~a 1355 (1496)
++|.|++ |++|+|.+||.++...+..+ +|++++++||+| .+|. .|+++|+.. . . .. .++++.++
T Consensus 330 k~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 408 (529)
T PRK15134 330 LALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAV 408 (529)
T ss_pred HHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHH
Confidence 9999998 58999999999998776544 477899999998 3665 499999963 1 1 01 13456778
Q ss_pred HHHcCCcH-HHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--Cc
Q 039402 1356 LDKCQLGD-EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DC 1432 (1496)
Q Consensus 1356 L~~~~L~~-~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~ 1432 (1496)
+++.++.+ ...+. ..+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++
T Consensus 409 l~~~~l~~~~~~~~-----------~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 477 (529)
T PRK15134 409 MEEVGLDPETRHRY-----------PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQL 477 (529)
T ss_pred HHHcCCCHHHHhcC-----------CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCC
Confidence 88888753 33222 356899999999999999999999999999999999999999999998642 78
Q ss_pred EEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCC
Q 039402 1433 TVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKS 1472 (1496)
Q Consensus 1433 TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~ 1472 (1496)
|||+|+|+++.+.. ||+|++|++|+|++.|+++++++++.
T Consensus 478 tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 518 (529)
T PRK15134 478 AYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQ 518 (529)
T ss_pred EEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCCC
Confidence 99999999999876 99999999999999999999987543
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-64 Score=637.66 Aligned_cols=541 Identities=20% Similarity=0.224 Sum_probs=424.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 295 MFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLN-GRRDF--ENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGI 371 (1496)
Q Consensus 295 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~-~~~~~--~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~ 371 (1496)
+.+.+++.+++..++.++..++..+.|++++.+++... .+... .......++++++..++..++.....+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888899999999999999999999998642 22100 0111112223334445666777777778889999
Q ss_pred HHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039402 372 RMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWY-IHDPWLVLFEVALSILILYKNLGIASLAALFG 450 (1496)
Q Consensus 372 ~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~ 450 (1496)
++...++..+|+|.++++....++.++|++++++++|++.+.+++.. +..+....+.+++++++++..-...+++.+++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997643 44444445555555444443333223332222
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 451 TVIV-MLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSF 529 (1496)
Q Consensus 451 ~~~~-~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~ 529 (1496)
++++ ..+...+.+..++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+..........
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (574)
T PRK11160 170 LLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQA 249 (574)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 223345566777778888899999999999999999999999999999998877665554444444333333222
Q ss_pred HHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc
Q 039402 530 VFWGAP--TFVSVATFGTCILLNVPLESGKMLSAIATFRL-LQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLV 606 (1496)
Q Consensus 530 ~~~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~-l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 606 (1496)
+..... ..+.++.++.+. .++.++.|.+++++.+... ...|+..++..+..+.+++.|++||.++++.++..++..
T Consensus 250 ~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~ 328 (574)
T PRK11160 250 LMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPT 328 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence 222111 222334455555 4678899998887766544 346888899999999999999999999997654322111
Q ss_pred cCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe----
Q 039402 607 EKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---- 682 (1496)
Q Consensus 607 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~---- 682 (1496)
.. +.......++++|++|+|+.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 329 ~~-~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~ 406 (574)
T PRK11160 329 TS-TAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD 406 (574)
T ss_pred cc-CCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 11 111123469999999999632 357999999999999999999999999999999999999999999999984
Q ss_pred ---------eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 683 ---------KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 683 ---------~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
++||+|+|++|++||+|||.++.+ .++++..++++.++++++++. |+|++|.+||+|.+||||||||++
T Consensus 407 ~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 407 YSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred CCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHH
Confidence 599999999999999999999875 688899999999999999999 999999999999999999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
||||++++|+++|||||||+||+++++.+.+ .+....+++|+|+|||+++.++.||+|++|++|++++.|+++|+++++
T Consensus 486 lARall~~~~ililDE~ts~lD~~t~~~i~~-~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 564 (574)
T PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILE-LLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ 564 (574)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcC
Confidence 9999999999999999999999999998865 455566799999999999999999999999999999999999999998
Q ss_pred cchHHHHH
Q 039402 833 TDFMELVG 840 (1496)
Q Consensus 833 ~~~~~~~~ 840 (1496)
+.|.+++.
T Consensus 565 g~y~~l~~ 572 (574)
T PRK11160 565 GRYYQLKQ 572 (574)
T ss_pred cHHHHHHh
Confidence 88888754
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-66 Score=705.94 Aligned_cols=251 Identities=20% Similarity=0.273 Sum_probs=204.6
Q ss_pred HHHHHHHHhHhHHHHHHHhh--cCCCCCCCCccCCCCCCCCCCcc--eEEEEeEEeEeC--CCCCccceeeeEEeeCCcE
Q 039402 1202 WFACDLENKIISVERIFQYT--CIPSEPPLAIEESRPNDSWPSHG--KIDLLDLQVRYA--PQMPLVLQGISCTFPGGEK 1275 (1496)
Q Consensus 1202 ~~~~~le~~~~sveRi~~~~--~~~~E~~~~~~~~~~~~~wp~~g--~I~f~nvs~~Y~--~~~~~vLk~iS~~I~~Gek 1275 (1496)
+...+.|+++.++||..+|. +.+.|.+.......+|. ..| .++++||+++|+ ++.+.+|+|||++|+|||+
T Consensus 715 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~ 791 (1394)
T TIGR00956 715 KAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEK---ESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTL 791 (1394)
T ss_pred hcccccccccccccccccCCCCccccccccccccccccc---cCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEE
Confidence 33456778889999998873 34444433222211221 134 479999999985 3345799999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhcccC---CCccEEEECCeeCCCCChHHHhcccEEEccccc-ccccchhhccCCC------C
Q 039402 1276 TGIVGRTGSGKSTLIQTLFRIVE---PAAGQILIDGIDISLIGLHDLRSRLSIIPQDPV-MFEGTVRSNLDPL------E 1345 (1496)
Q Consensus 1276 vgIVGrTGSGKSTLl~~L~rl~e---p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~-LF~gTIR~NLdp~------~ 1345 (1496)
+||+||||||||||+++|.|+.+ |++|+|.+||.++. .++|++++||||++. ++..||||||+.. .
T Consensus 792 ~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~ 867 (1394)
T TIGR00956 792 TALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPK 867 (1394)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCC
Confidence 99999999999999999999998 78999999999985 367899999999876 4567999999721 1
Q ss_pred CCcHH----HHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC-EEEEEcCCCCCCHHHHHH
Q 039402 1346 ESTDE----QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK-ILMLDEATASVDTATDNL 1420 (1496)
Q Consensus 1346 ~~sd~----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~-ILiLDEaTsslD~~Td~~ 1420 (1496)
+.+++ .+.++++..++.+ ..|+.+++.|.+||||||||++|||||+++|+ ||+||||||+||+.+...
T Consensus 868 ~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~ 940 (1394)
T TIGR00956 868 SVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWS 940 (1394)
T ss_pred CCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHH
Confidence 33443 3567788777643 46889999888999999999999999999997 999999999999999999
Q ss_pred HHHHHHHh-cCCcEEEEEccCcchh--cccCEEEEEeCC-eEeEecChhh
Q 039402 1421 IQQTLRQH-FSDCTVLTIAHRITSV--IDSDLVLLLNHG-LIEEFDNPAN 1466 (1496)
Q Consensus 1421 Iq~~I~~~-f~~~TVI~IAHRl~ti--~~~DrIlVL~~G-~IvE~g~p~~ 1466 (1496)
|++.|++. .+++|||+++|++++. ..||+|++|++| +++++|++.+
T Consensus 941 i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 941 ICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 99999987 4689999999999974 469999999997 9999999743
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-63 Score=647.88 Aligned_cols=547 Identities=19% Similarity=0.234 Sum_probs=447.9
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 289 VKLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQ 368 (1496)
Q Consensus 289 ~~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 368 (1496)
.+.++..++.+++.+....++.++..++.++.|++++.++|.+..... ....+.+++++++..++..++.....+...+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~-~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG-LSTLSVLALAMLAVAIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677788888888899999999999999999999997753322 1223344455555666677778888888889
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 039402 369 LGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGIASLAA 447 (1496)
Q Consensus 369 ~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~ 447 (1496)
++.++...++..+|+|.++++....++.++|++++++ +|++.+.+++. .+.......+.+++.+++++..-++.+++.
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 284 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVV 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 69999998753 333333333333444445554455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 448 LFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAIS 527 (1496)
Q Consensus 448 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~ 527 (1496)
++++++...+...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.+++.+..++..+...+........
T Consensus 285 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (694)
T TIGR01846 285 IGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIA 364 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666677777788888888999999999999999999999999999999998876665555544444443333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 039402 528 SFVFWGAP--TFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDL 605 (1496)
Q Consensus 528 ~~~~~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 605 (1496)
..+..... ..+.++.+|++.+..+.+|.|.++++..+...+..|+..+...+..+.+++++++|+.++++.++..+..
T Consensus 365 ~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 444 (694)
T TIGR01846 365 GQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA 444 (694)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC
Confidence 32222221 2233456788888889999999999999999999999999999999999999999999999766433211
Q ss_pred ccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe---
Q 039402 606 VEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--- 682 (1496)
Q Consensus 606 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--- 682 (1496)
...+.......++++|++|+|+.+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 445 -~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~ 522 (694)
T TIGR01846 445 -GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLA 522 (694)
T ss_pred -CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehh
Confidence 111111123469999999999643 457999999999999999999999999999999999999999999999984
Q ss_pred ----------eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 683 ----------KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 683 ----------~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
++||+|+|++|++|++|||.++.+ .++++..++++.++++++++.+|.|.+|.+|++|.+||||||||+
T Consensus 523 ~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 523 IADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred hCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 589999999999999999999864 678888999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhc
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
+||||++++|+|+|||||||+||+++++.+.+. +....+++|+|+|||+++.++.||+|++|++|++++.|+++++++.
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRN-MREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL 681 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHH-HHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc
Confidence 999999999999999999999999999988764 4555678999999999999999999999999999999999999998
Q ss_pred CcchHHHHH
Q 039402 832 GTDFMELVG 840 (1496)
Q Consensus 832 ~~~~~~~~~ 840 (1496)
++.|.++..
T Consensus 682 ~~~y~~l~~ 690 (694)
T TIGR01846 682 QGLYARLWQ 690 (694)
T ss_pred CChHHHHHH
Confidence 888888764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-64 Score=633.83 Aligned_cols=505 Identities=20% Similarity=0.225 Sum_probs=396.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 294 AMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRM 373 (1496)
Q Consensus 294 al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~i 373 (1496)
.+++.+++.++...++.++..++..+.|++++.++|.+..... ....+.++.++++..++..++.....+...+.+.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (529)
T TIGR02868 6 PLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRS 84 (529)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677778888888999999999999999999987653321 111111112222334455666666667777889999
Q ss_pred HHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 039402 374 RAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWY-IHDPWLVLFEVALSILILYKNLGIASLAALFGTV 452 (1496)
Q Consensus 374 r~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~~~ 452 (1496)
...++..+|+|.++++....++.++|+++|++++|++++.+++.. +..+....+.+++++++++..-+..+++.++.++
T Consensus 85 ~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~ 164 (529)
T TIGR02868 85 LGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLL 164 (529)
T ss_pred HHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987653 3344444444444444444333333333333333
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 453 IVMLVNIPL-GRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVF 531 (1496)
Q Consensus 453 ~~~~~~~~~-~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~~ 531 (1496)
++.++...+ .+..++..++..+..++..+...|.++|+++||.+++|+.+.+++.+..++..+...+.....+....+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (529)
T TIGR02868 165 LAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQ 244 (529)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333233 3444556677778889999999999999999999999999999998877665555555444444333332
Q ss_pred HHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCC
Q 039402 532 WGAP--TFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQ 609 (1496)
Q Consensus 532 ~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~ 609 (1496)
.... ..+.++.++.+.+.++.++.|.+.+++.+...+..|+..++..+..+.+++++.+|+.++++.++..++.....
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~ 324 (529)
T TIGR02868 245 LLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPA 324 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC
Confidence 2222 22334456777778889999999999999999999999999999999999999999999997665322111100
Q ss_pred C--CCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC------
Q 039402 610 P--SGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------ 681 (1496)
Q Consensus 610 ~--~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g------ 681 (1496)
+ .......++++|++|+|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 325 ~~~~~~~~~~I~~~~vsf~Y~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~ 402 (529)
T TIGR02868 325 AGALGLGKPTLELRDLSFGYPG--SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL 402 (529)
T ss_pred CcccCCCCceEEEEEEEEecCC--CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH
Confidence 0 1112346999999999963 34799999999999999999999999999999999999999999999999
Q ss_pred ------eeEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHH
Q 039402 682 ------TKAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754 (1496)
Q Consensus 682 ------~~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 754 (1496)
.++||||+|++|++||+|||.+|.+ .++++++++++.++++++++.+|+|++|.+||+|.+||||||||++||
T Consensus 403 ~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiA 482 (529)
T TIGR02868 403 QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALA 482 (529)
T ss_pred HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHH
Confidence 6899999999999999999999865 688999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCc
Q 039402 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQV 802 (1496)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 802 (1496)
||++++|+|+||||||||||+++++.+.+.+ ....+++|+|+||||+
T Consensus 483 Rall~~~~iliLDE~TSaLD~~te~~I~~~l-~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 483 RALLADAPILLLDEPTEHLDAGTESELLEDL-LAALSGKTVVVITHHL 529 (529)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHhcCCCEEEEEecCC
Confidence 9999999999999999999999999997654 4566799999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-63 Score=635.99 Aligned_cols=541 Identities=20% Similarity=0.272 Sum_probs=425.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 294 AMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRM 373 (1496)
Q Consensus 294 al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~i 373 (1496)
.+++.+++.+++.+++.++..++.++.|+++..++|.+..... .. .+++.+++..++..+......+...++..++
T Consensus 12 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T PRK13657 12 QYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD---IF-PLLAAWAGFGLFNIIAGVLVARHADRLAHRR 87 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888999999999999999999998764321 11 1122222222333344444555667888899
Q ss_pred HHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 039402 374 RAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGIASLAALFGTV 452 (1496)
Q Consensus 374 r~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~~~ 452 (1496)
+..++..+|+|.++++.....+.+.|+++++++.|++.+.+... .+.......+..++.+++++..-++.+++.+++++
T Consensus 88 ~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~ 167 (588)
T PRK13657 88 RLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGI 167 (588)
T ss_pred HHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987533 33333333333333333333333333344444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 039402 453 IVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFV-- 530 (1496)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~-- 530 (1496)
+...+...+.+..++.+++.++..++......|.++|++.||.|+.|+.+.+++.+.-++..+...+..........+
T Consensus 168 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK13657 168 VYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNR 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566677788888888999999999999999999999999999999888877655443333322222221111111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCC
Q 039402 531 FWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQP 610 (1496)
Q Consensus 531 ~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~ 610 (1496)
.......+.+++++++.+..+.+|.|.+++++.++..+..|+..+...+..+.+++.+++|+.++++.++..+......+
T Consensus 248 ~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 327 (588)
T PRK13657 248 AASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAID 327 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCC
Confidence 11122334556778888889999999999999999999999999999999999999999999999876443221111111
Q ss_pred CCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------
Q 039402 611 SGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------- 682 (1496)
Q Consensus 611 ~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------- 682 (1496)
.......++++|++|+|+. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 328 ~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~ 405 (588)
T PRK13657 328 LGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRA 405 (588)
T ss_pred cCCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHH
Confidence 1112246999999999963 357999999999999999999999999999999999999999999999983
Q ss_pred -----eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH
Q 039402 683 -----KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 756 (1496)
Q Consensus 683 -----~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 756 (1496)
++||||+|++|++|++|||.++.+ .++++..++++.++++++++.+|.|.+|.+|++|.+||||||||++||||
T Consensus 406 ~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARa 485 (588)
T PRK13657 406 SLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARA 485 (588)
T ss_pred HHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 699999999999999999999964 67888899999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchH
Q 039402 757 LYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFM 836 (1496)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~ 836 (1496)
++++|+|+|||||||+||+++++.+++.+ ....+++|+|+||||++.++.||+|++|++|++++.|+++++++.++.|.
T Consensus 486 ll~~~~iliLDEpts~LD~~t~~~i~~~l-~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~ 564 (588)
T PRK13657 486 LLKDPPILILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFA 564 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHH
Confidence 99999999999999999999999997654 44557899999999999999999999999999999999999998888888
Q ss_pred HHHHH
Q 039402 837 ELVGA 841 (1496)
Q Consensus 837 ~~~~~ 841 (1496)
++...
T Consensus 565 ~l~~~ 569 (588)
T PRK13657 565 ALLRA 569 (588)
T ss_pred HHHHH
Confidence 87753
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-66 Score=651.89 Aligned_cols=443 Identities=23% Similarity=0.355 Sum_probs=341.1
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC--CccEEEEcCe------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK--ISGTLKLCGT------------ 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~--~~G~i~~~g~------------ 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++| ++|+|.++|.
T Consensus 5 ~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeC---CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 589999999995 35799999999999999999999999999999999999996 8999999872
Q ss_pred --eEEEccCCccCC-CcHHHHhccCCCC------CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 --KAYVAQSPWIQS-GKIEDNILFGKEM------NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 --~~yv~Q~~~i~~-~ti~eNI~~g~~~------~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
++||+|++.++. .|++||+.++... +.+...+.+ .+-++.+.. .........+|||||||||+|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l--~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRA-----QKLLAQLKL--DINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHH-----HHHHHHcCC--CCCcccchhhCCHHHHHHHHH
Confidence 699999997765 5999999987431 222111111 122333322 223356778999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
|||++.+|+++||||||++||+.....+.+.+.+...+|+|+|++||+++++.. ||+|++|++|+++..|+.+++..
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~-- 232 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE-- 232 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCH--
Confidence 999999999999999999999999988876443333458999999999999865 99999999999988765322100
Q ss_pred cchHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccchhHHHHHhhccchHH
Q 039402 833 TDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEEREKGKVGFS 912 (1496)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~ 912 (1496)
++
T Consensus 233 ---------------------------------------------------------------------~~--------- 234 (506)
T PRK13549 233 ---------------------------------------------------------------------DD--------- 234 (506)
T ss_pred ---------------------------------------------------------------------HH---------
Confidence 00
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 913 VYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATA 992 (1496)
Q Consensus 913 ~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~ 992 (1496)
......+ .
T Consensus 235 ----~~~~~~~-----------------------------------~--------------------------------- 242 (506)
T PRK13549 235 ----IITMMVG-----------------------------------R--------------------------------- 242 (506)
T ss_pred ----HHHHhhC-----------------------------------c---------------------------------
Confidence 0000000 0
Q ss_pred HHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 039402 993 GYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFV 1072 (1496)
Q Consensus 993 ~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i 1072 (1496)
+
T Consensus 243 -------------------~------------------------------------------------------------ 243 (506)
T PRK13549 243 -------------------E------------------------------------------------------------ 243 (506)
T ss_pred -------------------C------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 039402 1073 PAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLG 1152 (1496)
Q Consensus 1073 p~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~ 1152 (1496)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCcc
Q 039402 1153 LRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIE 1232 (1496)
Q Consensus 1153 ~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~ 1232 (1496)
.. + . .|.++
T Consensus 244 -------------------------~~------------------------------------~---~--~~~~~----- 252 (506)
T PRK13549 244 -------------------------LT------------------------------------A---L--YPREP----- 252 (506)
T ss_pred -------------------------cc------------------------------------c---c--ccccc-----
Confidence 00 0 0 00000
Q ss_pred CCCCCCCCCCcceEEEEeEEeEeCC-CCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-CCccEEEECCee
Q 039402 1233 ESRPNDSWPSHGKIDLLDLQVRYAP-QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-PAAGQILIDGID 1310 (1496)
Q Consensus 1233 ~~~~~~~wp~~g~I~f~nvs~~Y~~-~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-p~~G~I~IDG~d 1310 (1496)
++ +....|+++|++++|.. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.|
T Consensus 253 ---~~---~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~ 326 (506)
T PRK13549 253 ---HT---IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKP 326 (506)
T ss_pred ---cC---CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEE
Confidence 00 11125999999999952 12359999999999999999999999999999999999998 599999999999
Q ss_pred CCCCCh-HHHhcccEEEcccc---cccc-cchhhccCCC--CC------Cc----HHHHHHHHHHcCCc-HHHHhccCCc
Q 039402 1311 ISLIGL-HDLRSRLSIIPQDP---VMFE-GTVRSNLDPL--EE------ST----DEQIWEALDKCQLG-DEVRKKEGKL 1372 (1496)
Q Consensus 1311 I~~i~l-~~LR~~i~iIpQdp---~LF~-gTIR~NLdp~--~~------~s----d~eI~~aL~~~~L~-~~i~~lp~gL 1372 (1496)
+...+. +..|.+++|+||+| .+|. .|+.+|+... .. .+ .+++.++++++++. +. .
T Consensus 327 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~ 399 (506)
T PRK13549 327 VKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTAS-------P 399 (506)
T ss_pred CCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCC-------c
Confidence 875543 34677899999997 3664 5999999631 11 11 13466677777763 12 2
Q ss_pred ccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEE
Q 039402 1373 DSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLV 1450 (1496)
Q Consensus 1373 dt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrI 1450 (1496)
|. ....||||||||++||||++++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|
T Consensus 400 ~~----~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v 475 (506)
T PRK13549 400 EL----AIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRV 475 (506)
T ss_pred cc----ccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEE
Confidence 22 235799999999999999999999999999999999999999999998753 47899999999999876 9999
Q ss_pred EEEeCCeEeEecChhhHh
Q 039402 1451 LLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1451 lVL~~G~IvE~g~p~~Ll 1468 (1496)
++|++|+++..|+++++.
T Consensus 476 ~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 476 LVMHEGKLKGDLINHNLT 493 (506)
T ss_pred EEEECCEEEEEeccccCC
Confidence 999999999999998874
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-66 Score=651.95 Aligned_cols=441 Identities=20% Similarity=0.315 Sum_probs=337.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC--------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------T 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g--------------~ 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 588999999995 35799999999999999999999999999999999999999999999987 2
Q ss_pred eEEEccCCccCC-CcHHHHhccCCCC----------CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 683 KAYVAQSPWIQS-GKIEDNILFGKEM----------NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 683 ~~yv~Q~~~i~~-~ti~eNI~~g~~~----------~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
++|++|++.++. .|++||+.++... +.+..++. ..+-++.+.. ....+....+|||||||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~gl--~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVR-----AAMMLLRVGL--KVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHH-----HHHHHHHcCC--CCCcccchhhCCHHHHHHH
Confidence 699999987765 5999999876420 11111110 1111222221 1223567789999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
+|||||+.+|+++||||||++||+.+...+.+.+.+...+|+|+|+|||+++++.. ||++++|++|++++.|+++++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999998876443333458999999999999875 99999999999988776544210
Q ss_pred cCcchHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccchhHHHHHhhccch
Q 039402 831 SGTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEEREKGKVG 910 (1496)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~ 910 (1496)
. +..
T Consensus 235 ~-----~~~----------------------------------------------------------------------- 238 (510)
T PRK09700 235 D-----DIV----------------------------------------------------------------------- 238 (510)
T ss_pred H-----HHH-----------------------------------------------------------------------
Confidence 0 000
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 911 FSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLA 990 (1496)
Q Consensus 911 ~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~ 990 (1496)
....+. . ..
T Consensus 239 --------~~~~~~----------------------------~----~~------------------------------- 247 (510)
T PRK09700 239 --------RLMVGR----------------------------E----LQ------------------------------- 247 (510)
T ss_pred --------HHhcCC----------------------------C----cc-------------------------------
Confidence 000000 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039402 991 TAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIV 1070 (1496)
Q Consensus 991 ~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1070 (1496)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039402 1071 FVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEW 1150 (1496)
Q Consensus 1071 ~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~w 1150 (1496)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCC
Q 039402 1151 LGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLA 1230 (1496)
Q Consensus 1151 l~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~ 1230 (1496)
. + +...++.++
T Consensus 248 ------------------------~----------------------------------------~---~~~~~~~~~-- 258 (510)
T PRK09700 248 ------------------------N----------------------------------------R---FNAMKENVS-- 258 (510)
T ss_pred ------------------------c----------------------------------------c---ccccccccc--
Confidence 0 0 000000000
Q ss_pred ccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCee
Q 039402 1231 IEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGID 1310 (1496)
Q Consensus 1231 ~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~d 1310 (1496)
++ +....|+++|++++|. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+
T Consensus 259 -----~~---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~ 326 (510)
T PRK09700 259 -----NL---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKD 326 (510)
T ss_pred -----cC---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEE
Confidence 00 0112599999999773 28999999999999999999999999999999999999999999999999
Q ss_pred CCCCCh-HHHhcccEEEcccc---ccccc-chhhccCCCCC------------Cc----HHHHHHHHHHcCCc-HHHHhc
Q 039402 1311 ISLIGL-HDLRSRLSIIPQDP---VMFEG-TVRSNLDPLEE------------ST----DEQIWEALDKCQLG-DEVRKK 1368 (1496)
Q Consensus 1311 I~~i~l-~~LR~~i~iIpQdp---~LF~g-TIR~NLdp~~~------------~s----d~eI~~aL~~~~L~-~~i~~l 1368 (1496)
+...+. ..+|++++|+||++ .+|.+ |+++|+..... .+ .+++.+++++.++. +.
T Consensus 327 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---- 402 (510)
T PRK09700 327 ISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHS---- 402 (510)
T ss_pred CCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCC----
Confidence 876543 45778999999984 57765 99999863211 01 12355667776653 22
Q ss_pred cCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-
Q 039402 1369 EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID- 1446 (1496)
Q Consensus 1369 p~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~- 1446 (1496)
.+.+ ...||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. ++.|||+|+|+++.+..
T Consensus 403 ---~~~~----~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~ 475 (510)
T PRK09700 403 ---VNQN----ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITV 475 (510)
T ss_pred ---ccCc----cccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhh
Confidence 2333 34699999999999999999999999999999999999999999998753 47899999999998865
Q ss_pred cCEEEEEeCCeEeEecChhh
Q 039402 1447 SDLVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1447 ~DrIlVL~~G~IvE~g~p~~ 1466 (1496)
||+|++|++|++++.+++.+
T Consensus 476 ~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 476 CDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred CCEEEEEECCEEEEEecCcc
Confidence 99999999999999887733
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-63 Score=631.90 Aligned_cols=529 Identities=22% Similarity=0.291 Sum_probs=419.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 039402 310 TVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAALIAMIYNKGLTLS 389 (1496)
Q Consensus 310 ~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~ls 389 (1496)
.++..++..+.|++++.++|.+..........+.+++.+++..++..++.....+...+.+.++...++..+|+|.++++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45566677788999999999775432111222333444555555666666666677778899999999999999999999
Q ss_pred cchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 390 SQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGI-ASLAALFGTVIVMLVNIPLGRVQEN 467 (1496)
Q Consensus 390 ~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~-~~l~~l~~~~~~~~~~~~~~~~~~~ 467 (1496)
.....++++|++++++++|++.+.+... .+..++..++..++++++++..+++ .+++.++++++.+.+...+.+...+
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986543 3455555545444444444323333 3344444445555555666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 039402 468 FQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGA--PTFVSVATFGT 545 (1496)
Q Consensus 468 ~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~--p~~v~~~~f~~ 545 (1496)
..++.++..++..+...|.++|+++||.+++|+.+.+++.+..++..+...+..........+.... ...+.++.+|.
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888999999999999999999999888886654433333333222222222111111 12233455677
Q ss_pred HHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCccEEEEeeEE
Q 039402 546 CILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNF 625 (1496)
Q Consensus 546 ~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~~ 625 (1496)
+.+.++.++.|.+++++.++..+..|+..++..+..+.+++++.+|+.++++.++..+.... +.......+++++++|
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~--~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE--PVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC--CCCCCCCcEEEEEEEE
Confidence 87888999999999999999999999999999999999999999999999976543221111 1111234699999999
Q ss_pred EecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eEEEccCCcc
Q 039402 626 SWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSPWI 692 (1496)
Q Consensus 626 ~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~yv~Q~~~i 692 (1496)
+|+.+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++||+|+|++
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99743 467999999999999999999999999999999999999999999999984 5999999999
Q ss_pred CCCcHHHHhccCC-CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC
Q 039402 693 QSGKIEDNILFGK-EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS 771 (1496)
Q Consensus 693 ~~~ti~eNI~~g~-~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s 771 (1496)
|++|++|||.++. +.++++++++++.+++++++..+|+|++|.+|++|.+||||||||++||||++++|+|+|||||||
T Consensus 401 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts 480 (569)
T PRK10789 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALS 480 (569)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 9999999999996 478889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHHHHHh
Q 039402 772 AVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAH 842 (1496)
Q Consensus 772 aLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~ 842 (1496)
+||+++++++.+. +....+++|+|+|||+++.++.||+|++|++|++++.|+++++++.++.|.++...+
T Consensus 481 ~LD~~~~~~i~~~-l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 481 AVDGRTEHQILHN-LRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred cCCHHHHHHHHHH-HHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 9999999998765 455567999999999999999999999999999999999999998888888876543
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-63 Score=631.10 Aligned_cols=540 Identities=24% Similarity=0.330 Sum_probs=429.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 293 KAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIR 372 (1496)
Q Consensus 293 ~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 372 (1496)
+.+++ ++ .++...++.++..++....|.++..+++.+... ......+...+++..++..++.....+...+++.+
T Consensus 8 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 82 (567)
T COG1132 8 LKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD---LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQK 82 (567)
T ss_pred HHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 67 888888899999999999999999999887611 11122222233333334555566666667777789
Q ss_pred HHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039402 373 MRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWL-VLFEVALSILILYKNLGIASLAALFGT 451 (1496)
Q Consensus 373 ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~-~pl~i~~~~~lL~~~lg~~~l~~l~~~ 451 (1496)
+...++..+|+|.++++...++++++|++++++++|++.+.+++.....+.. .++.++..+++++..-...+++.+++.
T Consensus 83 ~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 162 (567)
T COG1132 83 IVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLIL 162 (567)
T ss_pred HHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998765433333 334444444444433222333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 039402 452 VIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFV- 530 (1496)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~- 530 (1496)
+++......+.++.++..++..+..++..+.+.|.++|++++|.++.|+...++..+..+...+...+..........+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (567)
T COG1132 163 PLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLM 242 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556656688888888999999999999999999999999999887776655444333322222222222211
Q ss_pred HH-HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCC
Q 039402 531 FW-GAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQ 609 (1496)
Q Consensus 531 ~~-~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~ 609 (1496)
.. ..-..+.++.++.+.+..+.++.|.+.+++.++..+..|+..+...+..+.++..|.+|+.++++.++...+....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~- 321 (567)
T COG1132 243 LLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP- 321 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC-
Confidence 11 1222334455566667788899999999999999999999999999999999999999999999875432221111
Q ss_pred CCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------
Q 039402 610 PSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------- 682 (1496)
Q Consensus 610 ~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------- 682 (1496)
.......++++|++|+|+. ++++|+|+||++++||++|||||+|||||||+++|+|+++|++|+|.+||.
T Consensus 322 -~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~ 398 (567)
T COG1132 322 -LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISL 398 (567)
T ss_pred -CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCH
Confidence 1123346999999999973 468999999999999999999999999999999999999999999999884
Q ss_pred ------eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHH
Q 039402 683 ------KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 755 (1496)
Q Consensus 683 ------~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR 755 (1496)
++||||+|++|++||+|||.+|.+ .++++..++++.++++++++.+|+|.+|.+||+|.+||||||||++|||
T Consensus 399 ~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiAR 478 (567)
T COG1132 399 DSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIAR 478 (567)
T ss_pred HHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHH
Confidence 599999999999999999999987 6889999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcch
Q 039402 756 ALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDF 835 (1496)
Q Consensus 756 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~ 835 (1496)
|+++||+|++||||||+||+++++.+.+. +....++||+|+|+||++.+..||+|+||++|+|++.|+|+|++++++.|
T Consensus 479 all~~~~ILILDEaTSalD~~tE~~I~~~-l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y 557 (567)
T COG1132 479 ALLRNPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLY 557 (567)
T ss_pred HHhcCCCEEEEeccccccCHHhHHHHHHH-HHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHH
Confidence 99999999999999999999999988654 44555889999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 039402 836 MELVGAH 842 (1496)
Q Consensus 836 ~~~~~~~ 842 (1496)
.+++..+
T Consensus 558 ~~l~~~~ 564 (567)
T COG1132 558 ARLYQAQ 564 (567)
T ss_pred HHHHHHh
Confidence 9987654
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-63 Score=589.16 Aligned_cols=529 Identities=22% Similarity=0.316 Sum_probs=427.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 305 VTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAALIAMIYNK 384 (1496)
Q Consensus 305 ~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~ir~~L~~~iy~K 384 (1496)
..+++..+..++...+-+++-..++.+-..+. ....+.++++++++.++++++.........+.+.++|..|+..+++|
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777766544332 22334556677777888899888888899999999999999999999
Q ss_pred HhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 039402 385 GLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPW---LVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIP 460 (1496)
Q Consensus 385 ~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~---~~pl~i~~~~~lL~~~lg~~~l~~l~~~~~~~~~~~~ 460 (1496)
..++++...++.++|++.++++.-++.+..++. |++... ..|+-+.++++...+. ++++-++.+.++.++...
T Consensus 83 l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~---aalIllit~PlIPlfMil 159 (559)
T COG4988 83 LAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWA---AALILLITAPLIPLFMIL 159 (559)
T ss_pred HHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998754 444433 3455555554444433 333444444444445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 461 LGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKI----INLRKRETGWLKKYVYTSAISSFVFWGAPT 536 (1496)
Q Consensus 461 ~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i----~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~ 536 (1496)
+++..++..+++++.-..-....-+.|+|+.++|.|+..+...++| ++.|+.-|+.+|-.....++.-++...+ +
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~ls-i 238 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLS-I 238 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 6777777788888888888888999999999999999988877777 4567777777776655555444443333 2
Q ss_pred HHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccC-CCCCCC
Q 039402 537 FVSVATFGTCILLN-VPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEK-QPSGSS 614 (1496)
Q Consensus 537 ~v~~~~f~~~~~~~-~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~-~~~~~~ 614 (1496)
.+..+ +.+.-+++ ++++-...+.++.+---+..|++.+...++.-.++..+.+.+..|++.+....+.... ......
T Consensus 239 AlvAv-~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~ 317 (559)
T COG4988 239 ALVAV-YIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEP 317 (559)
T ss_pred HHHHH-HHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCC
Confidence 22233 33344556 6999999999998888888999999999999999999999999999887654332221 111112
Q ss_pred CccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------
Q 039402 615 ETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1496)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------ 682 (1496)
...++.+|++|.|+. ++++++|+||++++|+++||||+||||||||+++|+|+.+|++|+|.+||.
T Consensus 318 ~~ei~~~~l~~~y~~--g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k 395 (559)
T COG4988 318 PIEISLENLSFRYPD--GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395 (559)
T ss_pred CceeeecceEEecCC--CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHh
Confidence 223445588888863 448999999999999999999999999999999999999999999999983
Q ss_pred -eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 683 -KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 683 -~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
++||+|+|.+|++|+||||+++++ .+++...++++..++.+.++. |+|.+|++||+|.+|||||+|||+||||++++
T Consensus 396 ~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~ 474 (559)
T COG4988 396 QISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474 (559)
T ss_pred HeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 699999999999999999999987 678899999999999999999 99999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHHHH
Q 039402 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVG 840 (1496)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~ 840 (1496)
+++||||||||+||+++++.|. +.+..+.++||+|+||||++.+..+|+|++|++|+++++|+|+++.++++.|.+++.
T Consensus 475 ~~l~llDEpTA~LD~etE~~i~-~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~ 553 (559)
T COG4988 475 ASLLLLDEPTAHLDAETEQIIL-QALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLK 553 (559)
T ss_pred CCEEEecCCccCCCHhHHHHHH-HHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHH
Confidence 9999999999999999988775 556667788999999999999999999999999999999999999999999999886
Q ss_pred HhH
Q 039402 841 AHE 843 (1496)
Q Consensus 841 ~~~ 843 (1496)
.++
T Consensus 554 ~q~ 556 (559)
T COG4988 554 QQE 556 (559)
T ss_pred HHh
Confidence 543
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-66 Score=650.09 Aligned_cols=438 Identities=24% Similarity=0.400 Sum_probs=339.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCC--CCCccEEEEc---------------
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV--PKISGTLKLC--------------- 680 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~--~~~~G~i~~~--------------- 680 (1496)
++++|++++|. ++++|+|+||++.+||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEEC---CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 46789999985 357999999999999999999999999999999999997 7999999885
Q ss_pred --------C-----------------------eeEEEccC-CccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhc
Q 039402 681 --------G-----------------------TKAYVAQS-PWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACS 720 (1496)
Q Consensus 681 --------g-----------------------~~~yv~Q~-~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~ 720 (1496)
| .++|++|+ +.++. .|++||+.++.. .+. ++..++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1 26999997 55554 599999987531 222 22333444444
Q ss_pred hhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEc
Q 039402 721 LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVT 799 (1496)
Q Consensus 721 l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvt 799 (1496)
+.+ ...+...+|||||||||+|||||+.+|+++||||||++||+++..++.+.+.+... .|+|||+||
T Consensus 158 l~~-----------~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSH-----------RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chh-----------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 422 22456789999999999999999999999999999999999999998764433323 389999999
Q ss_pred cCcCcccc-CCEEEEEeCCeEEEecChHHHHhcCcchHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhh
Q 039402 800 HQVEFLPA-ADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEV 878 (1496)
Q Consensus 800 H~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (1496)
|+++++.. ||+|++|++|+++..|+++++...
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~----------------------------------------------- 259 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV----------------------------------------------- 259 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH-----------------------------------------------
Confidence 99999865 999999999999876655332100
Q ss_pred ccccCCCCchhhhhhhccchhHHHHHhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCC
Q 039402 879 ENNKGQNDKADEVAVSKGQLVQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDV 958 (1496)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~ 958 (1496)
|.. .
T Consensus 260 --------------------------------------~~~--------------------------------------~ 263 (520)
T TIGR03269 260 --------------------------------------FME--------------------------------------G 263 (520)
T ss_pred --------------------------------------HHh--------------------------------------h
Confidence 000 0
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhh
Q 039402 959 KPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLG 1038 (1496)
Q Consensus 959 ~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~ 1038 (1496)
T Consensus 264 -------------------------------------------------------------------------------- 263 (520)
T TIGR03269 264 -------------------------------------------------------------------------------- 263 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHH
Q 039402 1039 IPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIR 1118 (1496)
Q Consensus 1039 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIR 1118 (1496)
..
T Consensus 264 -----------------------------------------------------~~------------------------- 265 (520)
T TIGR03269 264 -----------------------------------------------------VS------------------------- 265 (520)
T ss_pred -----------------------------------------------------ch-------------------------
Confidence 00
Q ss_pred HhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 039402 1119 SFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLA 1198 (1496)
Q Consensus 1119 af~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~ 1198 (1496)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCC---CCCccceeeeEEeeCCcE
Q 039402 1199 TLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAP---QMPLVLQGISCTFPGGEK 1275 (1496)
Q Consensus 1199 ~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~---~~~~vLk~iS~~I~~Gek 1275 (1496)
..+. +... + +....|+++|++++|.. +..++|+|+||+|++||+
T Consensus 266 -------~~~~--------------~~~~--------~----~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~ 312 (520)
T TIGR03269 266 -------EVEK--------------ECEV--------E----VGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEI 312 (520)
T ss_pred -------hhcc--------------cccc--------C----CCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCE
Confidence 0000 0000 0 01125999999999953 234699999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHhcccCCCccEEEEC-Ce---eCCCCC---hHHHhcccEEEccccccccc-chhhccCC-CC-
Q 039402 1276 TGIVGRTGSGKSTLIQTLFRIVEPAAGQILID-GI---DISLIG---LHDLRSRLSIIPQDPVMFEG-TVRSNLDP-LE- 1345 (1496)
Q Consensus 1276 vgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ID-G~---dI~~i~---l~~LR~~i~iIpQdp~LF~g-TIR~NLdp-~~- 1345 (1496)
+||+|+||||||||+++|.|+.+|++|+|.++ |. ++...+ ...+|++++|+||++.+|.. |+++|+.. ..
T Consensus 313 ~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~ 392 (520)
T TIGR03269 313 FGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL 392 (520)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc
Confidence 99999999999999999999999999999996 64 344433 23567889999999988875 99999952 11
Q ss_pred CC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHH
Q 039402 1346 ES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI 1421 (1496)
Q Consensus 1346 ~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~I 1421 (1496)
.. .++++.++++.+++.+.- .++-++. ....||||||||++|||||+.+|+||||||||++||+.+.+.+
T Consensus 393 ~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~----~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l 466 (520)
T TIGR03269 393 ELPDELARMKAVITLKMVGFDEEK--AEEILDK----YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDV 466 (520)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCcc--chhhhhC----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 11 224567788888875310 0001122 2356999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1422 QQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1422 q~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
.+.|++..+ +.|||+|+|+++.+.. ||+|++|++|++++.|+|+++.+
T Consensus 467 ~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 467 THSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999988643 6899999999999976 99999999999999999998864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-63 Score=624.59 Aligned_cols=522 Identities=19% Similarity=0.228 Sum_probs=416.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 297 CSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAA 376 (1496)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~ir~~ 376 (1496)
+.+++.++...++.++..++..+.|++++.++|.+..... ....+.+++++++..++..++.....+...+++.++...
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS-VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGA 80 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888999999999999999999997643222 122333445556666777788888888889999999999
Q ss_pred HHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039402 377 LIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWY--IHDPWLVLFEVALSILILYKNLGIASLAALFGTVIV 454 (1496)
Q Consensus 377 L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~--~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~~~~~ 454 (1496)
++..+|+|.++++.. ..++..+.+++|++++.+++.. +..+...++.++..+ +++...++.+++.++++++.
T Consensus 81 lr~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~l~li~l~~~~l~ 154 (544)
T TIGR01842 81 LNQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLL-VCFLLHPWIGILALGGAVVL 154 (544)
T ss_pred HHHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHH
Confidence 999999999999873 2355678889999999987543 333344444433333 33333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 455 MLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGA 534 (1496)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~ 534 (1496)
+.+.....+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++.+..++..+...+.....+....+....
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556777778888999999999999999999999999999999999988776665554444433333332222221
Q ss_pred H--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCC
Q 039402 535 P--TFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSG 612 (1496)
Q Consensus 535 p--~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~ 612 (1496)
. ..+.++.++++.+.++.+|+|.+++++.++..+..|+..++..+..+.+++.+.+|+.++++.++..+... . ..
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~--~~ 311 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-P--LP 311 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-C--CC
Confidence 1 22345567888888999999999999999999999999999999999999999999999997654332111 1 11
Q ss_pred CCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe----------
Q 039402 613 SSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---------- 682 (1496)
Q Consensus 613 ~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~---------- 682 (1496)
..+..++++|++|+|+. +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 312 ~~~~~i~~~~v~~~y~~-~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 312 EPEGHLSVENVTIVPPG-GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred CCCCeEEEEEEEEEcCC-CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence 12346999999999963 2468999999999999999999999999999999999999999999999983
Q ss_pred ---eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 039402 683 ---KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 758 (1496)
Q Consensus 683 ---~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 758 (1496)
++||||+|++|++|++|||.++.+ .+++++.++++.++++++++.+|+|++|.+|++|.+||||||||++||||++
T Consensus 391 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 391 GKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 699999999999999999986654 7888899999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHh
Q 039402 759 QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 759 ~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
++|+++|||||||+||+++++.+.+. +... .+++|+|++||+++.+..||+|++|++|++++.|+++++++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANA-IKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHH-HHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999988754 4444 36899999999999888899999999999999999998864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=642.53 Aligned_cols=447 Identities=24% Similarity=0.361 Sum_probs=343.1
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 11 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYS---GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 589999999995 357999999999999999999999999999999999999999999999872
Q ss_pred eEEEccCCccCC-CcHHHHhccCCCCCH---HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 039402 683 KAYVAQSPWIQS-GKIEDNILFGKEMNR---ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 758 (1496)
Q Consensus 683 ~~yv~Q~~~i~~-~ti~eNI~~g~~~~~---~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 758 (1496)
++|++|++.++. .|++||+.++..... ++..++++..++. .....+..+|||||||||+|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-----------LDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC-----------ccccCChhhCCHHHHHHHHHHHHHH
Confidence 689999998765 599999998753221 2333334443332 1234667899999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcCcchHH
Q 039402 759 QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSGTDFME 837 (1496)
Q Consensus 759 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~ 837 (1496)
.+|+++||||||++||+.....+.+.+.....+|+|+|++||+++++.. ||+|++|++|++++.|+++++....
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~----- 231 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD----- 231 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH-----
Confidence 9999999999999999999998876544333458999999999999865 9999999999999988876543110
Q ss_pred HHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccchhHHHHHhhccchHHHHHHH
Q 039402 838 LVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEEREKGKVGFSVYWKY 917 (1496)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y 917 (1496)
... . . .. . ..
T Consensus 232 ~~~----~---~---~~-----------------------------~--~~----------------------------- 241 (510)
T PRK15439 232 IIQ----A---I---TP-----------------------------A--AR----------------------------- 241 (510)
T ss_pred HHH----H---H---hC-----------------------------c--cc-----------------------------
Confidence 000 0 0 00 0 00
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 918 ITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTA 997 (1496)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s 997 (1496)
... ...
T Consensus 242 ---------------------------------~~~----~~~------------------------------------- 247 (510)
T PRK15439 242 ---------------------------------EKS----LSA------------------------------------- 247 (510)
T ss_pred ---------------------------------ccc----ccc-------------------------------------
Confidence 000 000
Q ss_pred HHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039402 998 TLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGS 1077 (1496)
Q Consensus 998 ~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l 1077 (1496)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK15439 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 039402 1078 CIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDM 1157 (1496)
Q Consensus 1078 ~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~ 1157 (1496)
.
T Consensus 248 --------------~----------------------------------------------------------------- 248 (510)
T PRK15439 248 --------------S----------------------------------------------------------------- 248 (510)
T ss_pred --------------c-----------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCC
Q 039402 1158 LSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPN 1237 (1496)
Q Consensus 1158 l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~ 1237 (1496)
.+. .+ ..|..++ .++
T Consensus 249 ---------------------------------------------------------~~~-~~-~~~~~~~------~~~ 263 (510)
T PRK15439 249 ---------------------------------------------------------QKL-WL-ELPGNRR------QQA 263 (510)
T ss_pred ---------------------------------------------------------ccc-cc-ccccccc------ccC
Confidence 000 00 0000000 000
Q ss_pred CCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH
Q 039402 1238 DSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH 1317 (1496)
Q Consensus 1238 ~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~ 1317 (1496)
+..-.|+++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+..
T Consensus 264 ---~~~~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~ 333 (510)
T PRK15439 264 ---AGAPVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTA 333 (510)
T ss_pred ---CCCceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHH
Confidence 0112589999983 169999999999999999999999999999999999999999999999999877665
Q ss_pred H-HhcccEEEcccc---ccccc-chhhccCCC-----C---CC--cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCC
Q 039402 1318 D-LRSRLSIIPQDP---VMFEG-TVRSNLDPL-----E---ES--TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGEN 1382 (1496)
Q Consensus 1318 ~-LR~~i~iIpQdp---~LF~g-TIR~NLdp~-----~---~~--sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1382 (1496)
+ .|.+++|+||+| .+|.. |+++|+..+ . .. .++++.++|++.++.. ...+. ....
T Consensus 334 ~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~----~~~~ 403 (510)
T PRK15439 334 QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF------NHAEQ----AART 403 (510)
T ss_pred HHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC------CCccC----cccc
Confidence 4 467899999996 36654 999998421 1 01 1123556666666531 12233 3356
Q ss_pred CCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeE
Q 039402 1383 WSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEE 1460 (1496)
Q Consensus 1383 LS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE 1460 (1496)
||||||||++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|+++.
T Consensus 404 LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~ 483 (510)
T PRK15439 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISG 483 (510)
T ss_pred CCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998864 47899999999999976 99999999999999
Q ss_pred ecChhhHhhc
Q 039402 1461 FDNPANLLEN 1470 (1496)
Q Consensus 1461 ~g~p~~Ll~~ 1470 (1496)
.|+++++.++
T Consensus 484 ~~~~~~~~~~ 493 (510)
T PRK15439 484 ALTGAAINVD 493 (510)
T ss_pred EEccccCCHH
Confidence 9999888643
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-62 Score=621.85 Aligned_cols=541 Identities=17% Similarity=0.238 Sum_probs=427.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 294 AMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRM 373 (1496)
Q Consensus 294 al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~i 373 (1496)
.+++.+++.++...++.++..++..+.|++++.++|.+...+. . ..+++.+++..++..+......+...+++.++
T Consensus 12 ~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (585)
T TIGR01192 12 SYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD--V--LPTLALWAGFGVFNTIAYVLVAREADRLAHGR 87 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888999999999999999999999997754321 1 11111222233445555555666778888999
Q ss_pred HHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 039402 374 RAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGIASLAALFGTV 452 (1496)
Q Consensus 374 r~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~~~ 452 (1496)
+..++..+|+|.++++....+++++|++++++++|++.+.+++. .+......++.+++++++++..-+..+++.+++++
T Consensus 88 ~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 167 (585)
T TIGR01192 88 RATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGI 167 (585)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987654 33334444444444444443333333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 453 IVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFW 532 (1496)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~ 532 (1496)
+...+...+.+..++..++..+..++..+.+.|.++|+++||.++.|+.+.+++.+..++-.+...+..........+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (585)
T TIGR01192 168 LYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNR 247 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666777777888888888899999999999999999999999988888766554333322222222222211111
Q ss_pred --HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCC
Q 039402 533 --GAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQP 610 (1496)
Q Consensus 533 --~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~ 610 (1496)
..-..+.++.+|.+.+.++.++.|.+++++.++..+..|+..+...+..+.+++.+++|+.++++.++..++.....+
T Consensus 248 ~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~ 327 (585)
T TIGR01192 248 MASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPE 327 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCC
Confidence 111233445677888889999999999999999999999999999999999999999999999876432211111001
Q ss_pred CCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------
Q 039402 611 SGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------- 682 (1496)
Q Consensus 611 ~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------- 682 (1496)
.......++++|++|+|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 328 ~~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~ 405 (585)
T TIGR01192 328 LPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRE 405 (585)
T ss_pred CCCCCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHH
Confidence 1112346999999999963 357899999999999999999999999999999999999999999999884
Q ss_pred -----eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH
Q 039402 683 -----KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 756 (1496)
Q Consensus 683 -----~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 756 (1496)
++||+|+|+++++|++|||.++.+ .++++..++++.+++++++..+|+|.+|.+|++|.+||||||||++||||
T Consensus 406 ~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARa 485 (585)
T TIGR01192 406 SLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARA 485 (585)
T ss_pred HHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999864 57778888899999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchH
Q 039402 757 LYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFM 836 (1496)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~ 836 (1496)
++++|+++|||||||+||+++++.+.+ .+....+++|+|+|||+++.++.||+|++|++|++++.|++++++++++.|.
T Consensus 486 ll~~p~ililDEpts~LD~~~~~~i~~-~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~ 564 (585)
T TIGR01192 486 ILKNAPILVLDEATSALDVETEARVKN-AIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFY 564 (585)
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHH-HHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHH
Confidence 999999999999999999999988865 4555567999999999999998999999999999999999999999888888
Q ss_pred HHHHH
Q 039402 837 ELVGA 841 (1496)
Q Consensus 837 ~~~~~ 841 (1496)
++...
T Consensus 565 ~l~~~ 569 (585)
T TIGR01192 565 KLLRR 569 (585)
T ss_pred HHHHh
Confidence 87653
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=642.96 Aligned_cols=437 Identities=21% Similarity=0.319 Sum_probs=336.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~i~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFP---GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeC---CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 488999999995 357999999999999999999999999999999999999999999999872
Q ss_pred eEEEccCCccCC-CcHHHHhccCCCC-------CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHH
Q 039402 683 KAYVAQSPWIQS-GKIEDNILFGKEM-------NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754 (1496)
Q Consensus 683 ~~yv~Q~~~i~~-~ti~eNI~~g~~~-------~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 754 (1496)
++|++|++.++. .|++||+.++... +.+..++.+ .+-++.+..++ .......+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~--~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEA-----DKLLARLNLRF--SSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHH-----HHHHHHcCCCC--CccCchhhCCHHHHHHHHHH
Confidence 689999987765 5999999986431 221111111 11223322221 23566789999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcCc
Q 039402 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSGT 833 (1496)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~~ 833 (1496)
|||+.+|+++||||||++||+.+...+.+.+.....+++|+|++||+++++.. ||+|++|++|+++..|+.+++..
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~--- 230 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE--- 230 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH---
Confidence 99999999999999999999999988875433333458999999999999865 99999999999987664322100
Q ss_pred chHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccchhHHHHHhhccchHHH
Q 039402 834 DFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEEREKGKVGFSV 913 (1496)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~ 913 (1496)
++
T Consensus 231 --------------------------------------------------------------------~~---------- 232 (501)
T PRK10762 231 --------------------------------------------------------------------DS---------- 232 (501)
T ss_pred --------------------------------------------------------------------HH----------
Confidence 00
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 914 YWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAG 993 (1496)
Q Consensus 914 y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~ 993 (1496)
..... +. .
T Consensus 233 ---~~~~~-----------------------------~~------~---------------------------------- 240 (501)
T PRK10762 233 ---LIEMM-----------------------------VG------R---------------------------------- 240 (501)
T ss_pred ---HHHHh-----------------------------cC------C----------------------------------
Confidence 00000 00 0
Q ss_pred HHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039402 994 YKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVP 1073 (1496)
Q Consensus 994 ~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip 1073 (1496)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK10762 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 039402 1074 AVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGL 1153 (1496)
Q Consensus 1074 ~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~ 1153 (1496)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK10762 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccC
Q 039402 1154 RLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEE 1233 (1496)
Q Consensus 1154 rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~ 1233 (1496)
+.. ..++..+
T Consensus 241 --------------------------------------------------------------~~~---~~~~~~~----- 250 (501)
T PRK10762 241 --------------------------------------------------------------KLE---DQYPRLD----- 250 (501)
T ss_pred --------------------------------------------------------------Ccc---ccccccc-----
Confidence 000 0000000
Q ss_pred CCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC
Q 039402 1234 SRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL 1313 (1496)
Q Consensus 1234 ~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~ 1313 (1496)
++ |..-.|+++|+++ .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 251 --~~---~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~ 318 (501)
T PRK10762 251 --KA---PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVT 318 (501)
T ss_pred --cC---CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCC
Confidence 00 1112589999984 27999999999999999999999999999999999999999999999999987
Q ss_pred CCh-HHHhcccEEEcccc---cccc-cchhhccCCC-----CC----Cc----HHHHHHHHHHcCCcHHHHhccCCcccc
Q 039402 1314 IGL-HDLRSRLSIIPQDP---VMFE-GTVRSNLDPL-----EE----ST----DEQIWEALDKCQLGDEVRKKEGKLDSK 1375 (1496)
Q Consensus 1314 i~l-~~LR~~i~iIpQdp---~LF~-gTIR~NLdp~-----~~----~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~ 1375 (1496)
.+. +.+|++++|+||+| .+|. -|+++|+... .. .+ ++++.++++++++.+ +..+
T Consensus 319 ~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~-- 390 (501)
T PRK10762 319 RSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT------PSME-- 390 (501)
T ss_pred CCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC------CCcc--
Confidence 665 34678899999997 3554 5999999631 00 11 234666777776631 1122
Q ss_pred cccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEE
Q 039402 1376 VTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLL 1453 (1496)
Q Consensus 1376 v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL 1453 (1496)
.....||||||||++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|
T Consensus 391 --~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l 468 (501)
T PRK10762 391 --QAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVM 468 (501)
T ss_pred --CchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence 2345799999999999999999999999999999999999999999999864 47899999999999876 9999999
Q ss_pred eCCeEeEecChhhHh
Q 039402 1454 NHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1454 ~~G~IvE~g~p~~Ll 1468 (1496)
++|++++.|+++++.
T Consensus 469 ~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 469 HEGRISGEFTREQAT 483 (501)
T ss_pred ECCEEEEEeccccCC
Confidence 999999999988764
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=639.03 Aligned_cols=201 Identities=16% Similarity=0.320 Sum_probs=174.2
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
..|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +.++
T Consensus 318 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 (530)
T ss_pred ceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEE
Confidence 36999999999964 3599999999999999999999999999999999999999999999998 3579
Q ss_pred EEEccccc--ccc-cchhhccCCCC--CCcHHHHHHHHHHcCCc-HHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1324 SIIPQDPV--MFE-GTVRSNLDPLE--ESTDEQIWEALDKCQLG-DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1324 ~iIpQdp~--LF~-gTIR~NLdp~~--~~sd~eI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+|+||++. ++. .|+++|+..+. ...++++.++|+..++. +... ....+||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIK-----------KSVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhc-----------CcccccCHHHHHHHHHHHHH
Confidence 99999984 443 59999986332 23456788889998874 3322 22357899999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEe-EecChhhHhhc
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIE-EFDNPANLLEN 1470 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~Iv-E~g~p~~Ll~~ 1470 (1496)
+++|+||||||||++||+.+...+.+.|++. +.|||+|||+++.+.. ||+|++|++|+++ ..|++.++++.
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999999999999999999999886 4699999999999876 9999999999998 77999988754
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-62 Score=661.23 Aligned_cols=216 Identities=16% Similarity=0.225 Sum_probs=188.3
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
...|+++|++++|+....++|+||||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++.+ ..++.|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 34699999999997533469999999999999999999999999999999999999999999999999975 46678899
Q ss_pred cEEEccccccccc-chhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1323 LSIIPQDPVMFEG-TVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1323 i~iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
|||+||++.+++. |+||||..+ ...+ ++.+.++++.+++.+...+.+ ..||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~-----------~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA-----------GTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999998865 999999632 1122 233556788888876544333 46899999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
|||+.+|+||+|||||++||+.+.+.+.+.|++.. +++|||+++|+++.+.. ||||++|++|+++..|++++|.++
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 99999999999999999999999999999998863 57999999999999976 999999999999999999999654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-65 Score=640.29 Aligned_cols=443 Identities=22% Similarity=0.331 Sum_probs=334.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC--CccEEEEcCe-------------
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK--ISGTLKLCGT------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~--~~G~i~~~g~------------- 682 (1496)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 2 l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFG---GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeC---CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 67899999995 35799999999999999999999999999999999999987 7999999872
Q ss_pred -eEEEccCCccCC-CcHHHHhccCCCC-------CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 -KAYVAQSPWIQS-GKIEDNILFGKEM-------NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 -~~yv~Q~~~i~~-~ti~eNI~~g~~~-------~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
++||+|++.++. .|++||+.++... +.+...+. ..+-++.+...+. .......+|||||||||+|
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~-~~~~~~~~LSgG~~qrv~i 152 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLR-----AKNLLRELQLDAD-NVTRPVGDYGGGQQQLVEI 152 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHH-----HHHHHHHcCCCCC-cccCchhhCCHHHHHHHHH
Confidence 699999997765 5999999886431 11111111 1122232222110 0123467899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
|||++.+|+++||||||++||+.+...+.+.+.+...+|+|+|+|||+++++.. ||+|++|++|+++..|+.+++.
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~--- 229 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS--- 229 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC---
Confidence 999999999999999999999999998876443333458999999999999875 9999999999998654321100
Q ss_pred cchHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccchhHHHHHhhccchHH
Q 039402 833 TDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEEREKGKVGFS 912 (1496)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~ 912 (1496)
. ++
T Consensus 230 -------------------------------------------------------~-------------~~--------- 232 (500)
T TIGR02633 230 -------------------------------------------------------E-------------DD--------- 232 (500)
T ss_pred -------------------------------------------------------H-------------HH---------
Confidence 0 00
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 913 VYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATA 992 (1496)
Q Consensus 913 ~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~ 992 (1496)
. +... . ..
T Consensus 233 ~----~~~~------------------------------~-----~~--------------------------------- 240 (500)
T TIGR02633 233 I----ITMM------------------------------V-----GR--------------------------------- 240 (500)
T ss_pred H----HHHH------------------------------h-----Cc---------------------------------
Confidence 0 0000 0 00
Q ss_pred HHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 039402 993 GYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFV 1072 (1496)
Q Consensus 993 ~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i 1072 (1496)
+
T Consensus 241 -------------------~------------------------------------------------------------ 241 (500)
T TIGR02633 241 -------------------E------------------------------------------------------------ 241 (500)
T ss_pred -------------------c------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 039402 1073 PAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLG 1152 (1496)
Q Consensus 1073 p~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~ 1152 (1496)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T TIGR02633 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCcc
Q 039402 1153 LRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIE 1232 (1496)
Q Consensus 1153 ~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~ 1232 (1496)
.. + ..+.++
T Consensus 242 -------------------------~~------------------------------------~-----~~~~~~----- 250 (500)
T TIGR02633 242 -------------------------IT------------------------------------S-----LYPHEP----- 250 (500)
T ss_pred -------------------------cc------------------------------------c-----cccccc-----
Confidence 00 0 000000
Q ss_pred CCCCCCCCCCcceEEEEeEEeEeCCC-CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-CccEEEECCee
Q 039402 1233 ESRPNDSWPSHGKIDLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-AAGQILIDGID 1310 (1496)
Q Consensus 1233 ~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-~~G~I~IDG~d 1310 (1496)
.+ +..-.|+++|++++|..+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.+
T Consensus 251 --~~----~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~ 324 (500)
T TIGR02633 251 --HE----IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKP 324 (500)
T ss_pred --cC----CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEE
Confidence 00 011259999999999432 23599999999999999999999999999999999999995 89999999999
Q ss_pred CCCCCh-HHHhcccEEEcccc---cccc-cchhhccCCC-----CC---Cc----HHHHHHHHHHcCCcHHHHhccCCcc
Q 039402 1311 ISLIGL-HDLRSRLSIIPQDP---VMFE-GTVRSNLDPL-----EE---ST----DEQIWEALDKCQLGDEVRKKEGKLD 1373 (1496)
Q Consensus 1311 I~~i~l-~~LR~~i~iIpQdp---~LF~-gTIR~NLdp~-----~~---~s----d~eI~~aL~~~~L~~~i~~lp~gLd 1373 (1496)
+...+. ..+|++++++||++ .+|. .|+++|+... .. .. .+++.++|+++++.+. -.|
T Consensus 325 ~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~ 398 (500)
T TIGR02633 325 VDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA------SPF 398 (500)
T ss_pred CCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC------Ccc
Confidence 875443 56788999999997 3665 4999999641 11 11 2346667777766311 123
Q ss_pred cccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEE
Q 039402 1374 SKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVL 1451 (1496)
Q Consensus 1374 t~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIl 1451 (1496)
.+ ...||||||||++||||++++|++|||||||++||+.+.+.+.+.|++.. .+.|||+|+|+++.+.. ||+|+
T Consensus 399 ~~----~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~ 474 (500)
T TIGR02633 399 LP----IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVL 474 (500)
T ss_pred Cc----cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence 33 34699999999999999999999999999999999999999999998754 47899999999999976 99999
Q ss_pred EEeCCeEeEecChhhH
Q 039402 1452 LLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1452 VL~~G~IvE~g~p~~L 1467 (1496)
+|++|+++..++..++
T Consensus 475 ~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 475 VIGEGKLKGDFVNHAL 490 (500)
T ss_pred EEECCEEEEEEccccC
Confidence 9999999988766554
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-65 Score=636.51 Aligned_cols=439 Identities=23% Similarity=0.324 Sum_probs=334.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC--------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------T 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g--------------~ 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFP---GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEEC---CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 588999999995 35799999999999999999999999999999999999999999999976 2
Q ss_pred eEEEccCCccCC-CcHHHHhccCCC------CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHH
Q 039402 683 KAYVAQSPWIQS-GKIEDNILFGKE------MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 755 (1496)
Q Consensus 683 ~~yv~Q~~~i~~-~ti~eNI~~g~~------~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR 755 (1496)
++|++|++.++. .|++||+.++.. .+....++. ..+.++.+... ........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYE-----AREQLEHLGVD--IDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHH-----HHHHHHHcCCC--CCcCCchhhCCHHHHHHHHHHH
Confidence 689999998776 499999998631 122111111 11222332221 1234667899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcCcc
Q 039402 756 ALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSGTD 834 (1496)
Q Consensus 756 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~~~ 834 (1496)
|++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|+|||+++++.. ||+|++|++|+++..++..+
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~------- 226 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMA------- 226 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccc-------
Confidence 9999999999999999999999998876544433458999999999999865 99999999999975432100
Q ss_pred hHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccchhHHHHHhhccchHHHH
Q 039402 835 FMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEEREKGKVGFSVY 914 (1496)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y 914 (1496)
. . .. ++
T Consensus 227 ----------------------------------------------~--~--~~-------------~~----------- 232 (501)
T PRK11288 227 ----------------------------------------------Q--V--DR-------------DQ----------- 232 (501)
T ss_pred ----------------------------------------------c--C--CH-------------HH-----------
Confidence 0 0 00 00
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 915 WKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGY 994 (1496)
Q Consensus 915 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~ 994 (1496)
+... .. ..+
T Consensus 233 --~~~~------------------------------~~-----~~~---------------------------------- 241 (501)
T PRK11288 233 --LVQA------------------------------MV-----GRE---------------------------------- 241 (501)
T ss_pred --HHHH------------------------------hc-----CCC----------------------------------
Confidence 0000 00 000
Q ss_pred HHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039402 995 KTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPA 1074 (1496)
Q Consensus 995 ~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~ 1074 (1496)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039402 1075 VGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLR 1154 (1496)
Q Consensus 1075 ~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~r 1154 (1496)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCC
Q 039402 1155 LDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEES 1234 (1496)
Q Consensus 1155 l~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~ 1234 (1496)
. ++. .+.++.
T Consensus 242 -----------------------~------------------------------------~~~-----~~~~~~------ 251 (501)
T PRK11288 242 -----------------------I------------------------------------GDI-----YGYRPR------ 251 (501)
T ss_pred -----------------------c------------------------------------ccc-----cccccc------
Confidence 0 000 000000
Q ss_pred CCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC
Q 039402 1235 RPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI 1314 (1496)
Q Consensus 1235 ~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i 1314 (1496)
+ +....++++|++++ .+++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...
T Consensus 252 -~----~~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~ 320 (501)
T PRK11288 252 -P----LGEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIR 320 (501)
T ss_pred -C----CCCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCC
Confidence 0 01125899999842 389999999999999999999999999999999999999999999999998754
Q ss_pred Ch-HHHhcccEEEccccc---ccc-cchhhccCCCC--C-------C-c---HHHHHHHHHHcCCcHHHHhccCCccccc
Q 039402 1315 GL-HDLRSRLSIIPQDPV---MFE-GTVRSNLDPLE--E-------S-T---DEQIWEALDKCQLGDEVRKKEGKLDSKV 1376 (1496)
Q Consensus 1315 ~l-~~LR~~i~iIpQdp~---LF~-gTIR~NLdp~~--~-------~-s---d~eI~~aL~~~~L~~~i~~lp~gLdt~v 1376 (1496)
.. +..|++++++||+|. +|. .|+.+|+.... . . . ++++.+.|+.+++.+ +..+.+
T Consensus 321 ~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~- 393 (501)
T PRK11288 321 SPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT------PSREQL- 393 (501)
T ss_pred CHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc------CCccCc-
Confidence 43 456789999999983 554 69999986311 0 0 1 234666777776621 112333
Q ss_pred ccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEe
Q 039402 1377 TENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLN 1454 (1496)
Q Consensus 1377 ~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~ 1454 (1496)
..+||||||||++||||++.+|++|||||||++||..+.+.+.+.|++.. .+.|||+|+|+++.+.. ||+|++|+
T Consensus 394 ---~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~ 470 (501)
T PRK11288 394 ---IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMR 470 (501)
T ss_pred ---cccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEE
Confidence 35799999999999999999999999999999999999999999998764 37899999999999976 99999999
Q ss_pred CCeEeEecChhhHh
Q 039402 1455 HGLIEEFDNPANLL 1468 (1496)
Q Consensus 1455 ~G~IvE~g~p~~Ll 1468 (1496)
+|++++.|++++..
T Consensus 471 ~g~i~~~~~~~~~~ 484 (501)
T PRK11288 471 EGRIAGELAREQAT 484 (501)
T ss_pred CCEEEEEEccccCC
Confidence 99999999998765
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-62 Score=614.47 Aligned_cols=511 Identities=22% Similarity=0.271 Sum_probs=403.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 299 VWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLN-GRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAAL 377 (1496)
Q Consensus 299 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~-~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~ir~~L 377 (1496)
+|+.++...++.++..++..+.|++++.++|.+. .... ....+.+++.+++..++..++.....+...+++.++...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (529)
T TIGR02857 1 ARRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQL 79 (529)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888999999999999999999999873 3221 1222333444555556677777777888889999999999
Q ss_pred HHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039402 378 IAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGIASLAALFGTVIVML 456 (1496)
Q Consensus 378 ~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~~~~~~~ 456 (1496)
+..+|+|.++++....++.++|+++|++++|++.+.+++. .+..+....+.+++++++++....+.+++.++.+++...
T Consensus 80 r~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 80 RERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998754 355555555555544444443333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 457 VNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPT 536 (1496)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~ 536 (1496)
+...+.+..++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+..++..+...+..........+......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777788888999999999999999999999999999998888765444333332222222222222111111
Q ss_pred H--HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCC
Q 039402 537 F--VSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSS 614 (1496)
Q Consensus 537 ~--v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~ 614 (1496)
+ +.++.++++.+..+.++.|.+++++.+...+..|+..+...+..+.+++++++|+.++++.++.+.+.. ..+. ..
T Consensus 240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~-~~~~-~~ 317 (529)
T TIGR02857 240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA-PVTA-AP 317 (529)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-CCCC-CC
Confidence 1 122234455556788999999999999999999999999999999999999999999997543221111 1111 11
Q ss_pred CccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------
Q 039402 615 ETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1496)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------ 682 (1496)
...++++|++|+|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 318 ~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 318 APSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred CCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 2469999999999732 358999999999999999999999999999999999999999999999984
Q ss_pred -eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 683 -KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 683 -~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
++||+|+|++|++||+|||.++.+ .++++..++++.++++++++.+|+|.+|.+||+|.+||||||||++||||++++
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 699999999999999999999865 678889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEE
Q 039402 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVM 814 (1496)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 814 (1496)
|+++|||||||+||+++++.+++. +....+++|+|+|||+++.+..||+|++|
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEA-LRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHH-HHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999754 45556799999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-64 Score=630.85 Aligned_cols=436 Identities=22% Similarity=0.331 Sum_probs=330.5
Q ss_pred EeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------eEEE
Q 039402 621 VDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------KAYV 686 (1496)
Q Consensus 621 ~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------------~~yv 686 (1496)
+|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|+
T Consensus 2 ~nl~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 2 SNISKSFP---GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CceEEEeC---CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 57788885 357999999999999999999999999999999999999999999999873 6899
Q ss_pred ccCCccC-CCcHHHHhccCCC------CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 039402 687 AQSPWIQ-SGKIEDNILFGKE------MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQ 759 (1496)
Q Consensus 687 ~Q~~~i~-~~ti~eNI~~g~~------~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~ 759 (1496)
+|++.++ +.|++||+.++.. .+.++..+. ..+-++.+ |......+...+|||||||||+||||++.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRD-----TKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 9999765 4599999988642 122211111 11122322 22223456778999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcCcchHHH
Q 039402 760 DSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSGTDFMEL 838 (1496)
Q Consensus 760 ~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~ 838 (1496)
+|+++||||||++||+.+...+.+.+.....+|+|+|++||+++++.. ||+|++|++|++++.|+.+++..
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~-------- 223 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTM-------- 223 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCH--------
Confidence 999999999999999999998876543333458999999999999865 99999999999988765422100
Q ss_pred HHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccchhHHHHHhhccchHHHHHHHH
Q 039402 839 VGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEEREKGKVGFSVYWKYI 918 (1496)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~ 918 (1496)
. +. .
T Consensus 224 -------------------------------------------------~-------------~~--------------~ 227 (491)
T PRK10982 224 -------------------------------------------------D-------------KI--------------I 227 (491)
T ss_pred -------------------------------------------------H-------------HH--------------H
Confidence 0 00 0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 919 TTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTAT 998 (1496)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~ 998 (1496)
... . ..
T Consensus 228 ~~~------------------------------~-----~~--------------------------------------- 233 (491)
T PRK10982 228 AMM------------------------------V-----GR--------------------------------------- 233 (491)
T ss_pred HHH------------------------------h-----CC---------------------------------------
Confidence 000 0 00
Q ss_pred HHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039402 999 LLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSC 1078 (1496)
Q Consensus 999 ~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~ 1078 (1496)
+
T Consensus 234 -------------~------------------------------------------------------------------ 234 (491)
T PRK10982 234 -------------S------------------------------------------------------------------ 234 (491)
T ss_pred -------------C------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 039402 1079 IWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDML 1158 (1496)
Q Consensus 1079 ~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l 1158 (1496)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCC
Q 039402 1159 SSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPND 1238 (1496)
Q Consensus 1159 ~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~ 1238 (1496)
+ .+ ..+.++ .+
T Consensus 235 ----------------------------------------------------~---~~-----~~~~~~-------~~-- 245 (491)
T PRK10982 235 ----------------------------------------------------L---TQ-----RFPDKE-------NK-- 245 (491)
T ss_pred ----------------------------------------------------c---cc-----cccccc-------CC--
Confidence 0 00 000000 00
Q ss_pred CCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH
Q 039402 1239 SWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD 1318 (1496)
Q Consensus 1239 ~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~ 1318 (1496)
|....|+++|++++| +.+|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.+||.++...+..+
T Consensus 246 --~~~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 246 --PGEVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANE 319 (491)
T ss_pred --CCCcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHH
Confidence 111259999999985 24899999999999999999999999999999999999999999999999998776544
Q ss_pred -HhcccEEEccccc---ccc-cchhhc-----cCCC----CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCC
Q 039402 1319 -LRSRLSIIPQDPV---MFE-GTVRSN-----LDPL----EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380 (1496)
Q Consensus 1319 -LR~~i~iIpQdp~---LF~-gTIR~N-----Ldp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1380 (1496)
+|+.++++||++. +|. .|+++| +... +..+ ++++.+.++..++.+ +.+|. ..
T Consensus 320 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~----~~ 389 (491)
T PRK10982 320 AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT------PGHRT----QI 389 (491)
T ss_pred HHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC------CCccc----cc
Confidence 5778999999963 565 377666 3211 1111 223455555555421 11233 34
Q ss_pred CCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeE
Q 039402 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLI 1458 (1496)
Q Consensus 1381 ~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~I 1458 (1496)
..||||||||++||||++++|+||||||||++||+.+.+.+.+.|++.. .+.|||+|||+++.+.. ||||++|++|++
T Consensus 390 ~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i 469 (491)
T PRK10982 390 GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469 (491)
T ss_pred ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEE
Confidence 5799999999999999999999999999999999999999999997753 47899999999999976 999999999999
Q ss_pred eEecChhhHh
Q 039402 1459 EEFDNPANLL 1468 (1496)
Q Consensus 1459 vE~g~p~~Ll 1468 (1496)
+..++++++.
T Consensus 470 ~~~~~~~~~~ 479 (491)
T PRK10982 470 AGIVDTKTTT 479 (491)
T ss_pred EEEEccccCC
Confidence 9888776544
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-64 Score=630.23 Aligned_cols=440 Identities=20% Similarity=0.282 Sum_probs=334.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~ 683 (1496)
.++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLS---DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcC---CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 378999999995 346999999999999999999999999999999999999999999998762 5
Q ss_pred EEEccCCcc---------CCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHH
Q 039402 684 AYVAQSPWI---------QSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754 (1496)
Q Consensus 684 ~yv~Q~~~i---------~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 754 (1496)
+|++|++.. +..|++||+.++.. ++++..++++..++.+ ..+....+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITA-----------LLDRRFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHh-----------hhhCCcccCCHHHHHHHHHH
Confidence 899998643 14589999876532 2344455555555432 22456789999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcCc
Q 039402 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSGT 833 (1496)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~~ 833 (1496)
||++.+|+++||||||++||+...+.+.+.+.+...+|+|+|++||+++.+.. ||+|++|++|+++..|+++++.....
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 227 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQAL 227 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcchh
Confidence 99999999999999999999999998876544433458999999999999865 99999999999999887665432100
Q ss_pred chHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccchhHHHHHhhccchHHH
Q 039402 834 DFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEEREKGKVGFSV 913 (1496)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~ 913 (1496)
... .. .. +
T Consensus 228 -~~~-------------------------------------------~~----~~-------------~----------- 235 (490)
T PRK10938 228 -VAQ-------------------------------------------LA----HS-------------E----------- 235 (490)
T ss_pred -hhh-------------------------------------------hh----hh-------------h-----------
Confidence 000 00 00 0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 914 YWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAG 993 (1496)
Q Consensus 914 y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~ 993 (1496)
. +... ..+
T Consensus 236 ------~------------------------------~~~~---~~~--------------------------------- 243 (490)
T PRK10938 236 ------Q------------------------------LEGV---QLP--------------------------------- 243 (490)
T ss_pred ------c------------------------------cCcc---ccC---------------------------------
Confidence 0 0000 000
Q ss_pred HHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039402 994 YKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVP 1073 (1496)
Q Consensus 994 ~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip 1073 (1496)
T Consensus 244 -------------------------------------------------------------------------------- 243 (490)
T PRK10938 244 -------------------------------------------------------------------------------- 243 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 039402 1074 AVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGL 1153 (1496)
Q Consensus 1074 ~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~ 1153 (1496)
T Consensus 244 -------------------------------------------------------------------------------- 243 (490)
T PRK10938 244 -------------------------------------------------------------------------------- 243 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccC
Q 039402 1154 RLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEE 1233 (1496)
Q Consensus 1154 rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~ 1233 (1496)
. ..++.. +.
T Consensus 244 ---------------------~------------------------------------------------~~~~~~--~~ 252 (490)
T PRK10938 244 ---------------------E------------------------------------------------PDEPSA--RH 252 (490)
T ss_pred ---------------------c------------------------------------------------cccccc--cc
Confidence 0 000000 00
Q ss_pred CCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-CccEEEECCeeCC
Q 039402 1234 SRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-AAGQILIDGIDIS 1312 (1496)
Q Consensus 1234 ~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-~~G~I~IDG~dI~ 1312 (1496)
..+ +....|+++|++++|.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 253 -~~~---~~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~ 326 (490)
T PRK10938 253 -ALP---ANEPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRG 326 (490)
T ss_pred -ccC---CCCceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCC
Confidence 000 01225999999999964 3599999999999999999999999999999999998875 6999999998764
Q ss_pred C-CChHHHhcccEEEcccccccc---cchhhccCC-C-------CCCc---HHHHHHHHHHcCCcH-HHHhccCCccccc
Q 039402 1313 L-IGLHDLRSRLSIIPQDPVMFE---GTVRSNLDP-L-------EEST---DEQIWEALDKCQLGD-EVRKKEGKLDSKV 1376 (1496)
Q Consensus 1313 ~-i~l~~LR~~i~iIpQdp~LF~---gTIR~NLdp-~-------~~~s---d~eI~~aL~~~~L~~-~i~~lp~gLdt~v 1376 (1496)
. ......|++++++||++.++. -|+++++.. + .... ++++.++++.+++.+ ... .
T Consensus 327 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~-- 397 (490)
T PRK10938 327 SGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTAD-------A-- 397 (490)
T ss_pred CCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhcc-------C--
Confidence 2 234457889999999987643 477777642 1 1111 245677888888754 322 2
Q ss_pred ccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC-C-cEEEEEccCcchhcc--cCEEEE
Q 039402 1377 TENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS-D-CTVLTIAHRITSVID--SDLVLL 1452 (1496)
Q Consensus 1377 ~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~-~-~TVI~IAHRl~ti~~--~DrIlV 1452 (1496)
....||||||||++|||||+++|+||+|||||++||+.+...+.+.|++..+ + +|||+|+|+++.+.. ||+|++
T Consensus 398 --~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~ 475 (490)
T PRK10938 398 --PFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEF 475 (490)
T ss_pred --chhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEE
Confidence 2356999999999999999999999999999999999999999999998653 3 479999999999975 799999
Q ss_pred EeCCeEeEecC
Q 039402 1453 LNHGLIEEFDN 1463 (1496)
Q Consensus 1453 L~~G~IvE~g~ 1463 (1496)
|++|+|++.-+
T Consensus 476 l~~G~i~~~~~ 486 (490)
T PRK10938 476 VPDGDIYRYVQ 486 (490)
T ss_pred ecCCceEEeec
Confidence 99999988643
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-62 Score=671.71 Aligned_cols=474 Identities=19% Similarity=0.225 Sum_probs=373.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039402 990 ATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFI 1069 (1496)
Q Consensus 990 ~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1069 (1496)
...+.+....+...+++++++.|..+++...+|+++||+++|++.++... ..+..+....+.++..++++...-.+..+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l 444 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASL 444 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 46677777888889999999999999999999999999999999999875 34444444444444443333221001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 039402 1070 VFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAME 1149 (1496)
Q Consensus 1070 ~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 1149 (1496)
+.++++++++.+..++.+..+..++.....+....+.+.|.++|+++||+|++|+.|.+++.+..+...+..........
T Consensus 445 ~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~ 524 (1495)
T PLN03232 445 FGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSA 524 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222333444445555555566677788999999999999999999999999998877766655444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCC
Q 039402 1150 WLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPL 1229 (1496)
Q Consensus 1150 wl~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1229 (1496)
+..+.......+ +.+..+.......|.+++|.+-.++++...+...+..+...+..+.+..+|.+|+.++++.+++.+.
T Consensus 525 ~~~~~~~~~~~~-~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~ 603 (1495)
T PLN03232 525 FNSFILNSIPVV-VTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA 603 (1495)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 332221111111 1111112222346789999999999999999988998999999999999999999999986654221
Q ss_pred CccCCCCCCCCCCcceEEEEeEEeEeCCC-CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 039402 1230 AIEESRPNDSWPSHGKIDLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308 (1496)
Q Consensus 1230 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1308 (1496)
. .++ ..+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+.
T Consensus 604 ~----~~~-~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--- 675 (1495)
T PLN03232 604 Q----NPP-LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--- 675 (1495)
T ss_pred c----cCC-cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---
Confidence 1 111 11234679999999999753 35799999999999999999999999999999999999999998763
Q ss_pred eeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 039402 1309 IDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1309 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
.+|++|+||||+|.||+|||||||....++++++++++++.|++.+.++.+|+|+||.|||+|.|||||||
T Consensus 676 ---------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 746 (1495)
T PLN03232 676 ---------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746 (1495)
T ss_pred ---------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHH
Confidence 46889999999999999999999998778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHH-HHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhH
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLI-QQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~I-q~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
||++||||++++|+|++||||||+||++|++.| ++.++...+++|+|+||||++++..||+|++|++|+|+|.|+|++|
T Consensus 747 QRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL 826 (1495)
T PLN03232 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAEL 826 (1495)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHH
Confidence 999999999999999999999999999999877 5567777789999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHHh
Q 039402 1468 LENKSSSFSQLVAEYT 1483 (1496)
Q Consensus 1468 l~~~~s~F~~l~~~~~ 1483 (1496)
++ +++.|++++++..
T Consensus 827 ~~-~~~~~~~l~~~~~ 841 (1495)
T PLN03232 827 SK-SGSLFKKLMENAG 841 (1495)
T ss_pred Hh-cchhHHHHHHhcc
Confidence 96 4688999987654
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=613.53 Aligned_cols=467 Identities=18% Similarity=0.223 Sum_probs=365.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHH
Q 039402 974 LAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRI 1053 (1496)
Q Consensus 974 l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~ 1053 (1496)
+.++..++.+++.++....+.+...+++.++++++++.|++||+..++|++++|+++|++.+...+. .+..++..++.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~ 135 (547)
T PRK10522 57 LLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILT 135 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHH
Confidence 3334455667788888899999999999999999999999999999999999999999999987654 466777888888
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccH---HHHHHHH
Q 039402 1054 LGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQE---SRFRDRN 1130 (1496)
Q Consensus 1054 l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~---~~f~~~~ 1130 (1496)
++.++++++++|+++++++..+++.+++..++.+..+...+......+...+++.|.++|+.+++ ++.+ +++.+++
T Consensus 136 i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~ 214 (547)
T PRK10522 136 LGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEY 214 (547)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHH
Confidence 88888999999999887776666655555555555555555556677889999999999999996 4433 4566666
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1131 MKLMDEYSRPTFHIAAAMEWLGLRLDMLSSIT-FAFTLVFLISI-PKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLE 1208 (1496)
Q Consensus 1131 ~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~-~~~~~~~~~~~-~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le 1208 (1496)
.+..+...+....... +......+..+. ..+.+++++.. ..+..+.+.+++...+.+.+...+..+...+.++.
T Consensus 215 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~ 290 (547)
T PRK10522 215 EPDAQEYRHHIIRADT----FHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLL 290 (547)
T ss_pred hHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655544333221 111111111111 11111111111 11112333444444444556677888888889999
Q ss_pred HhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHH
Q 039402 1209 NKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKST 1288 (1496)
Q Consensus 1209 ~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKST 1288 (1496)
....+.+|+.++.+.|.|++. +...+. |..+.|+++||+|+|+++ +++|+|+||+|+|||++||||+|||||||
T Consensus 291 ~~~~a~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKST 364 (547)
T PRK10522 291 SAQVAFNKLNKLALAPYKAEF--PRPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKST 364 (547)
T ss_pred HHHHHHHHHHHHhcccccccc--cccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHH
Confidence 999999999998765543321 111111 223689999999999743 46999999999999999999999999999
Q ss_pred HHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhc
Q 039402 1289 LIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKK 1368 (1496)
Q Consensus 1289 Ll~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~l 1368 (1496)
|+++|+|+++|++|+|.+||+|+++++.+++|+++++|||||.+|+||+++| ..+.+|++++++++++++.+.+..
T Consensus 365 L~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~- 440 (547)
T PRK10522 365 LAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL- 440 (547)
T ss_pred HHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-
Confidence 9999999999999999999999999999999999999999999999999999 246788999999999999877653
Q ss_pred cCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc
Q 039402 1369 EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID 1446 (1496)
Q Consensus 1369 p~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~ 1446 (1496)
++|. .+|.+||||||||++||||++++|+|||||||||+||++|++.|.+.+.+.. +++|+|+||||++++..
T Consensus 441 ~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~ 515 (547)
T PRK10522 441 EDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH 515 (547)
T ss_pred cccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHh
Confidence 4442 2588999999999999999999999999999999999999999999998665 47999999999999999
Q ss_pred cCEEEEEeCCeEeEe
Q 039402 1447 SDLVLLLNHGLIEEF 1461 (1496)
Q Consensus 1447 ~DrIlVL~~G~IvE~ 1461 (1496)
||+|++|++|+++|.
T Consensus 516 ~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 516 ADRLLEMRNGQLSEL 530 (547)
T ss_pred CCEEEEEECCEEEEe
Confidence 999999999999998
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-61 Score=667.31 Aligned_cols=473 Identities=18% Similarity=0.215 Sum_probs=375.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039402 990 ATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFI 1069 (1496)
Q Consensus 990 ~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1069 (1496)
...+.+....+...+++++++.|..+++...+|+++|++++|++.++.... .+..+....+.++..++++...-.+..+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777888899999999999999999999999999999999998863 3455555555555444443332111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 039402 1070 VFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAME 1149 (1496)
Q Consensus 1070 ~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 1149 (1496)
+.++++++.+.++.++.+..+..++.....+....+.+.|.++|+.+||+|++|+.|.+++.+..+...+..........
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233333444444445555666666777888999999999999999999999999998877665544333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCC
Q 039402 1150 WLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPL 1229 (1496)
Q Consensus 1150 wl~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1229 (1496)
+..+....... .+.+..+.......|.++++.+..++++...+..++..+...+..+.+..+|.+|+.+|++.+++.+.
T Consensus 525 ~~~~~~~~~~~-~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~ 603 (1622)
T PLN03130 525 FNSFILNSIPV-LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL 603 (1622)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 22222111111 11111112223347889999988888888888888888889999999999999999999976543211
Q ss_pred CccCCCCCCCCCCcceEEEEeEEeEeCCC-CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCc-cEEEEC
Q 039402 1230 AIEESRPNDSWPSHGKIDLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA-GQILID 1307 (1496)
Q Consensus 1230 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~-G~I~ID 1307 (1496)
. .++ .-+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++ |+|.+
T Consensus 604 ~----~~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l- 677 (1622)
T PLN03130 604 P----NPP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI- 677 (1622)
T ss_pred c----CCc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-
Confidence 0 111 11224579999999999753 3579999999999999999999999999999999999999999 99973
Q ss_pred CeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1308 GIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1308 G~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
|.+|+||||+|.+|+|||||||....+++++++++|++.|+|.+.++.+|+|+||.|||+|.||||||
T Consensus 678 ------------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQ 745 (1622)
T PLN03130 678 ------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQ 745 (1622)
T ss_pred ------------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHH
Confidence 67899999999999999999999887889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHH-HHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhh
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLI-QQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~I-q~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~ 1466 (1496)
|||++||||++++|+|+|||||||+||+++++.| ++.++...+++|+|+||||++.+..||+|++|++|+|+|.|+|++
T Consensus 746 KQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~e 825 (1622)
T PLN03130 746 KQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEE 825 (1622)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999876 567887778999999999999999999999999999999999999
Q ss_pred HhhcCCcHHHHHHHHHh
Q 039402 1467 LLENKSSSFSQLVAEYT 1483 (1496)
Q Consensus 1467 Ll~~~~s~F~~l~~~~~ 1483 (1496)
|++ +++.|++++++..
T Consensus 826 L~~-~~~~~~~l~~~~~ 841 (1622)
T PLN03130 826 LSN-NGPLFQKLMENAG 841 (1622)
T ss_pred HHh-cchhHHHHHHhcc
Confidence 996 4688999987654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-62 Score=621.58 Aligned_cols=481 Identities=22% Similarity=0.322 Sum_probs=336.1
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC--eeEEEccCCccCC
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQS 694 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g--~~~yv~Q~~~i~~ 694 (1496)
.++++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++||+|+|++++
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 5899999999952 36799999999999999999999999999999999999999999999864 6899999999875
Q ss_pred C-cHHHHhccCCC-CC----------------HH-------HHHHHHHHh----------chhhHHHhccCCCcccccCC
Q 039402 695 G-KIEDNILFGKE-MN----------------RE-------RYNAVLDAC----------SLKKDLEILSFGDQTVIGER 739 (1496)
Q Consensus 695 ~-ti~eNI~~g~~-~~----------------~~-------~~~~v~~~~----------~l~~d~~~l~~g~~t~ig~~ 739 (1496)
. |++||+.++.. +. .+ ++.++.+.+ .+.+.++.+... ....+
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~~ 160 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP---PWDAK 160 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC---cccCc
Confidence 4 99999987631 00 00 000000000 011122222221 23567
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCe
Q 039402 740 GINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGK 818 (1496)
Q Consensus 740 g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 818 (1496)
..+|||||||||+||||++.+|+++|||||||+||+.+..++.+ ++... +.|+|+|||+++++.. ||+|++|++|+
T Consensus 161 ~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~-~L~~~--~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQ-FLHDY--PGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 78999999999999999999999999999999999999888864 45443 3599999999999876 99999999999
Q ss_pred EE-EecChHHHHhcCcchHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccc
Q 039402 819 IT-QAGKYNDLINSGTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQ 897 (1496)
Q Consensus 819 i~-~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (1496)
++ +.|+++++.+... ...... ..
T Consensus 238 i~~~~g~~~~~~~~~~-------~~~~~~-----------------------------------------~~-------- 261 (556)
T PRK11819 238 GIPWEGNYSSWLEQKA-------KRLAQE-----------------------------------------EK-------- 261 (556)
T ss_pred EEEecCCHHHHHHHHH-------HHHHHH-----------------------------------------HH--------
Confidence 86 7888877643210 000000 00
Q ss_pred hhHHHHHhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHH
Q 039402 898 LVQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVG 977 (1496)
Q Consensus 898 ~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~ 977 (1496)
..+..++ .++... -|..
T Consensus 262 --~~~~~~~----------~~~~~~-----------------------~~~~---------------------------- 278 (556)
T PRK11819 262 --QEAARQK----------ALKREL-----------------------EWVR---------------------------- 278 (556)
T ss_pred --HHHHHHH----------HHHHHH-----------------------HHHH----------------------------
Confidence 0000000 000000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 039402 978 SSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTI 1057 (1496)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~ 1057 (1496)
T Consensus 279 -------------------------------------------------------------------------------- 278 (556)
T PRK11819 279 -------------------------------------------------------------------------------- 278 (556)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHH
Q 039402 1058 AVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEY 1137 (1496)
Q Consensus 1058 ~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~ 1137 (1496)
+ ++.. + .. +
T Consensus 279 ------------------------------------~------~~~~-------------~----~~----~-------- 287 (556)
T PRK11819 279 ------------------------------------Q------SPKA-------------R----QA----K-------- 287 (556)
T ss_pred ------------------------------------H------hhhh-------------h----HH----H--------
Confidence 0 0000 0 00 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 039402 1138 SRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERI 1217 (1496)
Q Consensus 1138 ~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi 1217 (1496)
.+......+|.
T Consensus 288 ---------------------------------------------------------------------~~~~~~~~~~~ 298 (556)
T PRK11819 288 ---------------------------------------------------------------------SKARLARYEEL 298 (556)
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHh
Confidence 00000000111
Q ss_pred HHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1218 FQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1218 ~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.+. .+.+++.......++...+....|+++||+++|.+. .+|+|+||+|++||++||+|+||||||||+++|.|+.
T Consensus 299 ~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 374 (556)
T PRK11819 299 LSE--EYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE 374 (556)
T ss_pred hcc--cccccCCCceeecCCCCCCCCeEEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 000 000000000000011111223469999999999643 5999999999999999999999999999999999999
Q ss_pred CCCccEEEECCeeCCCCChHHHhcccEEEcccc-cccc-cchhhccCCCC---C--CcHHHHHHHHHHcCCcHHHHhccC
Q 039402 1298 EPAAGQILIDGIDISLIGLHDLRSRLSIIPQDP-VMFE-GTVRSNLDPLE---E--STDEQIWEALDKCQLGDEVRKKEG 1370 (1496)
Q Consensus 1298 ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~-gTIR~NLdp~~---~--~sd~eI~~aL~~~~L~~~i~~lp~ 1370 (1496)
+|++|+|.+++ + .+++|+||++ .++. -|+++|+.... . ..+++..++++..++.+..
T Consensus 375 ~p~~G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----- 438 (556)
T PRK11819 375 QPDSGTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD----- 438 (556)
T ss_pred CCCCeEEEECC-c----------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH-----
Confidence 99999999964 2 1699999997 5665 49999986321 1 1234455677777764211
Q ss_pred CcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCE
Q 039402 1371 KLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDL 1449 (1496)
Q Consensus 1371 gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~Dr 1449 (1496)
++. ....||||||||++||||++.+|++|||||||++||+.+...+.+.|++. + .|||+|||+++.+.. ||+
T Consensus 439 -~~~----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~ 511 (556)
T PRK11819 439 -QQK----KVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATH 511 (556)
T ss_pred -hcC----chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCE
Confidence 122 23469999999999999999999999999999999999999999999875 4 489999999999876 999
Q ss_pred EEEEeC-CeEeE-ecChhhHhhcC
Q 039402 1450 VLLLNH-GLIEE-FDNPANLLENK 1471 (1496)
Q Consensus 1450 IlVL~~-G~IvE-~g~p~~Ll~~~ 1471 (1496)
|++|++ |++.+ .|+++++++++
T Consensus 512 i~~l~~~g~~~~~~g~~~~~~~~~ 535 (556)
T PRK11819 512 ILAFEGDSQVEWFEGNFQEYEEDK 535 (556)
T ss_pred EEEEECCCeEEEecCCHHHHHHHH
Confidence 999996 88875 67888887653
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-62 Score=619.30 Aligned_cols=479 Identities=22% Similarity=0.317 Sum_probs=335.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC--eeEEEccCCccCC
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQS 694 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g--~~~yv~Q~~~i~~ 694 (1496)
.++++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++||+|+|+++.
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 5889999999951 35799999999999999999999999999999999999999999999974 6899999999875
Q ss_pred -CcHHHHhccCCCC------------------CH---------HHHHHHHHHhchh-------hHHHhccCCCcccccCC
Q 039402 695 -GKIEDNILFGKEM------------------NR---------ERYNAVLDACSLK-------KDLEILSFGDQTVIGER 739 (1496)
Q Consensus 695 -~ti~eNI~~g~~~------------------~~---------~~~~~v~~~~~l~-------~d~~~l~~g~~t~ig~~ 739 (1496)
.|++|||.++... ++ +++.++++.++.. +-++.+.. . .....
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~-~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC--P-PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCC--C-cccCc
Confidence 5999999875310 01 1223333444322 11222222 1 13567
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCe
Q 039402 740 GINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGK 818 (1496)
Q Consensus 740 g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 818 (1496)
..+|||||||||+||||++.+|+++||||||++||+++..++.+ .+... ++|+|+|||+++++.. ||++++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~-~L~~~--~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ-HLQEY--PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 78999999999999999999999999999999999999988865 44433 4699999999999876 99999999999
Q ss_pred EE-EecChHHHHhcCcchHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccc
Q 039402 819 IT-QAGKYNDLINSGTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQ 897 (1496)
Q Consensus 819 i~-~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (1496)
++ ..|+++++.+... ...+.. ....
T Consensus 236 i~~~~g~~~~~~~~~~-------~~~~~~-----------------------------------------~~~~------ 261 (552)
T TIGR03719 236 GIPWEGNYSSWLEQKE-------KRLEQE-----------------------------------------EKEE------ 261 (552)
T ss_pred EEEecCCHHHHHHHHH-------HHHHHH-----------------------------------------HHHH------
Confidence 76 7798887653210 000000 0000
Q ss_pred hhHHHHHhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHH
Q 039402 898 LVQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVG 977 (1496)
Q Consensus 898 ~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~ 977 (1496)
+..++ .+.... .|+.
T Consensus 262 --~~~~~------------~~~~~~-----------------------~~~~---------------------------- 276 (552)
T TIGR03719 262 --SARQK------------ALKREL-----------------------EWVR---------------------------- 276 (552)
T ss_pred --HHHHH------------HHHHHH-----------------------HHHH----------------------------
Confidence 00000 000000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 039402 978 SSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTI 1057 (1496)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~ 1057 (1496)
T Consensus 277 -------------------------------------------------------------------------------- 276 (552)
T TIGR03719 277 -------------------------------------------------------------------------------- 276 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHH
Q 039402 1058 AVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEY 1137 (1496)
Q Consensus 1058 ~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~ 1137 (1496)
+ .+.. . ++ +.
T Consensus 277 ------------------------------------~------~~~~---~---------~~---------~~------- 286 (552)
T TIGR03719 277 ------------------------------------S------SPKA---R---------QA---------KS------- 286 (552)
T ss_pred ------------------------------------h------hhhh---H---------HH---------HH-------
Confidence 0 0000 0 00 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 039402 1138 SRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERI 1217 (1496)
Q Consensus 1138 ~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi 1217 (1496)
+......++.
T Consensus 287 ----------------------------------------------------------------------~~~~~~~~~~ 296 (552)
T TIGR03719 287 ----------------------------------------------------------------------KARLARYEEL 296 (552)
T ss_pred ----------------------------------------------------------------------HHHHHHHHhh
Confidence 0000000111
Q ss_pred HHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1218 FQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1218 ~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.+. . ++.++.......+...-+.+..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.
T Consensus 297 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 372 (552)
T TIGR03719 297 LSQ-E-FQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE 372 (552)
T ss_pred hhh-c-ccccCCCceeecCCCCCCCCeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 110 0 0000000000000000012336999999999964 35999999999999999999999999999999999999
Q ss_pred CCCccEEEECCeeCCCCChHHHhcccEEEccccc-ccc-cchhhccCCCC---CC--cHHHHHHHHHHcCCcHHHHhccC
Q 039402 1298 EPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPV-MFE-GTVRSNLDPLE---ES--TDEQIWEALDKCQLGDEVRKKEG 1370 (1496)
Q Consensus 1298 ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~-LF~-gTIR~NLdp~~---~~--sd~eI~~aL~~~~L~~~i~~lp~ 1370 (1496)
+|++|+|.+++ + .+|+|+||++. ++. -|+++|+.... .. .+.+..+++++.++.+..
T Consensus 373 ~p~~G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----- 436 (552)
T TIGR03719 373 QPDSGTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD----- 436 (552)
T ss_pred CCCCeEEEECC-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH-----
Confidence 99999999964 2 16999999973 664 49999996321 11 133455677777764221
Q ss_pred CcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCE
Q 039402 1371 KLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDL 1449 (1496)
Q Consensus 1371 gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~Dr 1449 (1496)
.+ .....||||||||++||||++.+|++|||||||++||+.+...+.+.|++. . .|||+|+|+++.+.. ||+
T Consensus 437 -~~----~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~ 509 (552)
T TIGR03719 437 -QQ----KKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATH 509 (552)
T ss_pred -hc----CchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCE
Confidence 12 223569999999999999999999999999999999999999999999986 3 489999999999876 999
Q ss_pred EEEEeC-CeEeEe-cChhhHhh
Q 039402 1450 VLLLNH-GLIEEF-DNPANLLE 1469 (1496)
Q Consensus 1450 IlVL~~-G~IvE~-g~p~~Ll~ 1469 (1496)
|++|++ |+++++ |+++++.+
T Consensus 510 i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 510 ILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred EEEEECCCeEEEeCCCHHHHHH
Confidence 999997 688754 67766654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-62 Score=549.48 Aligned_cols=455 Identities=26% Similarity=0.434 Sum_probs=351.3
Q ss_pred ccEEEEeeEEEecCC-CCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC-----CccEEEEcC--------
Q 039402 616 TALDIVDGNFSWDIS-SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCG-------- 681 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~i~~~g-------- 681 (1496)
..++++|.+.++... ....++++|||++++||.+|+||++|||||--.++|+|+++. -+|+|.++|
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 357889988888643 346789999999999999999999999999999999999975 478999887
Q ss_pred ---------eeEEEccCCcc-CC--CcH----HHHhccCCCCCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCC
Q 039402 682 ---------TKAYVAQSPWI-QS--GKI----EDNILFGKEMNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGI 741 (1496)
Q Consensus 682 ---------~~~yv~Q~~~i-~~--~ti----~eNI~~g~~~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~ 741 (1496)
+|++++|+|-- .| .|| .|-|...+..+.+ +.-+.++..++.+ -...+...+.
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~--------p~~rl~~yPH 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPE--------PEKRLDAYPH 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCc--------hhhhhhhCCc
Confidence 47999999964 22 244 4555544444332 2223333333322 1223567789
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh--CCcEEEEEccCcCcccc-CCEEEEEeCCe
Q 039402 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL--SSKTVIYVTHQVEFLPA-ADLILVMKDGK 818 (1496)
Q Consensus 742 ~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 818 (1496)
+|||||||||.||.||..+||+||-||||.|||..+..+|.+ +++.+. .|..+++||||+..+.+ ||+|+||.+|+
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ 235 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD-LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH-HHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccE
Confidence 999999999999999999999999999999999999999975 454443 38999999999999987 99999999999
Q ss_pred EEEecChHHHHhcCcc-hHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccc
Q 039402 819 ITQAGKYNDLINSGTD-FMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQ 897 (1496)
Q Consensus 819 i~~~G~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (1496)
+++.|+.+++...... |.+.+-
T Consensus 236 ivE~~~t~~lF~~PqHpYTr~Ll--------------------------------------------------------- 258 (534)
T COG4172 236 IVETGTTETLFAAPQHPYTRKLL--------------------------------------------------------- 258 (534)
T ss_pred EeecCcHHHHhhCCCChHHHHHH---------------------------------------------------------
Confidence 9999987776543210 100000
Q ss_pred hhHHHHHhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHH
Q 039402 898 LVQEEEREKGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVG 977 (1496)
Q Consensus 898 ~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~ 977 (1496)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 039402 978 SSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTI 1057 (1496)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~ 1057 (1496)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHH
Q 039402 1058 AVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEY 1137 (1496)
Q Consensus 1058 ~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~ 1137 (1496)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 039402 1138 SRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERI 1217 (1496)
Q Consensus 1138 ~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi 1217 (1496)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCC---------CCccceeeeEEeeCCcEEEEEcCCCCCHHH
Q 039402 1218 FQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQ---------MPLVLQGISCTFPGGEKTGIVGRTGSGKST 1288 (1496)
Q Consensus 1218 ~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~---------~~~vLk~iS~~I~~GekvgIVGrTGSGKST 1288 (1496)
..||. ...+|..-...--++.+||.+.|+-. .-.+.+||||++++||.+||||+|||||||
T Consensus 259 ------~aeP~----g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsT 328 (534)
T COG4172 259 ------AAEPS----GDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKST 328 (534)
T ss_pred ------hcCCC----CCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcch
Confidence 00110 00011000112246667777766421 124789999999999999999999999999
Q ss_pred HHHHHhcccCCCccEEEECCeeCCCCChHH---HhcccEEEccccc--ccc-cchhhccC----CCC-CC----cHHHHH
Q 039402 1289 LIQTLFRIVEPAAGQILIDGIDISLIGLHD---LRSRLSIIPQDPV--MFE-GTVRSNLD----PLE-ES----TDEQIW 1353 (1496)
Q Consensus 1289 Ll~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR~~i~iIpQdp~--LF~-gTIR~NLd----p~~-~~----sd~eI~ 1353 (1496)
|-++|+|+.++. |+|..+|.||...+.++ +|+++-+|.|||+ |=. -||-+-+. -.. .. .|+.+.
T Consensus 329 lG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~ 407 (534)
T COG4172 329 LGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVI 407 (534)
T ss_pred HHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHH
Confidence 999999999876 99999999999988666 6899999999997 221 24444442 111 22 356789
Q ss_pred HHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CC
Q 039402 1354 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SD 1431 (1496)
Q Consensus 1354 ~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~ 1431 (1496)
+||+.+||+...... | ...||||||||++||||+.-+|++++||||||+||..-.++|.+.+|+.- .+
T Consensus 408 ~aL~EVGLDp~~r~R---Y-------PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~ 477 (534)
T COG4172 408 EALEEVGLDPATRNR---Y-------PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHG 477 (534)
T ss_pred HHHHHcCCChhHhhc---C-------CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhC
Confidence 999999998765432 2 24689999999999999999999999999999999999999999998764 35
Q ss_pred cEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCcHHHH
Q 039402 1432 CTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFSQ 1477 (1496)
Q Consensus 1432 ~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~ 1477 (1496)
-+-++|+|++..++. ||+|+||.+|+|||+|+-+++++++...|.+
T Consensus 478 LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 478 LSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred CeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHH
Confidence 699999999999987 9999999999999999999999999877753
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-60 Score=552.37 Aligned_cols=544 Identities=21% Similarity=0.256 Sum_probs=409.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 290 KLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRD-FENEGYVLVSAFCVAKLVECLCQRFRVFRLQQ 368 (1496)
Q Consensus 290 ~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~-~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 368 (1496)
++++..++ .|+.++++++++++..++....=.+-+.+|.-..-... ....-++-+++.=...+..+...+.-...+..
T Consensus 6 p~i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~ 84 (573)
T COG4987 6 PYLRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHD 84 (573)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34555555 77777777777776666554444444555533211111 01112222333334455666777777777788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHhHHHHHH
Q 039402 369 LGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWLVLFEVALSILIL--YKNLGIASLA 446 (1496)
Q Consensus 369 ~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~~~~~lL--~~~lg~~~l~ 446 (1496)
...++-+.|+..+|+|...+++.-.....+|++.|++..|++.+++.+..+..+|...+-++.+..+. +..++.+.+.
T Consensus 85 AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll 164 (573)
T COG4987 85 ATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLL 164 (573)
T ss_pred HHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88999999999999999999999888999999999999999999999999888888766555444433 4556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 447 ALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAI 526 (1496)
Q Consensus 447 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~ 526 (1496)
++...+.++.+...+.+..++..++..+.+..-.+...+.+.|+..++++|.++.|.+.++..-..-.+..+|......+
T Consensus 165 ~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~ 244 (573)
T COG4987 165 GLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGL 244 (573)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666667777888888888888888889999999999999999999999988765333222222333322222
Q ss_pred HHHHHHHHH-HHHHHHHH-HHHHHhcCCcC-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 039402 527 SSFVFWGAP-TFVSVATF-GTCILLNVPLE-SGKMLSAIATFRLLQVPIY-NLPDVISMIIQTKVSLQRIASFFCLDDLQ 602 (1496)
Q Consensus 527 ~~~~~~~~p-~~v~~~~f-~~~~~~~~~L~-~~~vft~l~l~~~l~~pl~-~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~ 602 (1496)
..+...... .++....+ ..+..-.+..+ +..+...+..|..+. +.. ..|..+....+...|.+|+.+.++.++..
T Consensus 245 ~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~e-af~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~ 323 (573)
T COG4987 245 SDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALE-AFEPLAPGAFQHLGQVIASARRLNDILDQKPEV 323 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHH-HHhhhcchhHHHhhHHHHHHHHHhhhccCCccc
Confidence 222222111 11111111 11111122333 233333333333333 232 23377888999999999999988765543
Q ss_pred CccccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe
Q 039402 603 PDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 682 (1496)
Q Consensus 603 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~ 682 (1496)
....++.+ .....++++|++|+|+.+ +.++|+|+||++++||++||+|++|||||||++.|.|-++|++|+|..+|.
T Consensus 324 ~~~~~~~~--~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~ 400 (573)
T COG4987 324 TFPDEQTA--TTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGV 400 (573)
T ss_pred CCCccccC--CccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCc
Confidence 32211111 122279999999999854 568999999999999999999999999999999999999999999999982
Q ss_pred -------------eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 -------------KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 -------------~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
+++++|.+++|++|+|||+..+++ .++|...++++..+|++.++..|+|.+|.+||.|..||||||
T Consensus 401 ~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~ 480 (573)
T COG4987 401 EIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGER 480 (573)
T ss_pred ChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHH
Confidence 578999999999999999999986 577888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l 828 (1496)
||++|||++.+|++++||||||.+||+.|++++.+.+ ....+|||+|+|||++..++.+|+|++|++|+++++|+|.++
T Consensus 481 rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll-~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~L 559 (573)
T COG4987 481 RRLALARALLHDAPLWLLDEPTEGLDPITERQVLALL-FEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAEL 559 (573)
T ss_pred HHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHH-HHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhh
Confidence 9999999999999999999999999999999998654 445679999999999999999999999999999999999999
Q ss_pred HhcCcchHHHH
Q 039402 829 INSGTDFMELV 839 (1496)
Q Consensus 829 ~~~~~~~~~~~ 839 (1496)
+.+++.|.++.
T Consensus 560 l~~~g~~~~l~ 570 (573)
T COG4987 560 LANNGRYKRLY 570 (573)
T ss_pred hccccHHHHHh
Confidence 99888888765
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=648.69 Aligned_cols=548 Identities=16% Similarity=0.165 Sum_probs=404.5
Q ss_pred hHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 290 KLIKAMFCSVWKDV-LVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQ 368 (1496)
Q Consensus 290 ~l~~al~~~~~~~~-~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 368 (1496)
+.++..++..++.. ++.+++.++..++....|+.++...+............+.+ ..+++..++..++.....+....
T Consensus 953 ~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~-~iy~~l~i~~~~~~~~~~~~~~~ 1031 (1522)
T TIGR00957 953 SVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRL-SVYGALGILQGFAVFGYSMAVSI 1031 (1522)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666553322 23333444555666677777776654211010011111111 12222223333333333444556
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 039402 369 LGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGIASLAA 447 (1496)
Q Consensus 369 ~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~ 447 (1496)
.+.+.-..+...+|++.++.+...+++.++|+++|++++|++.+.+.+. .+..+...++.++.++++++....+.+++.
T Consensus 1032 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~ 1111 (1522)
T TIGR00957 1032 GGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVII 1111 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888999999999999999999999999999999998654 444555566666666555544434433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 448 LFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAIS 527 (1496)
Q Consensus 448 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~ 527 (1496)
++++++...+..++.+..++.++...+.++...+..+|.++|+++||.|++|+.|.++..+..+...+..........+.
T Consensus 1112 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 1191 (1522)
T TIGR00957 1112 PPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWL 1191 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444445555555566677778899999999999999999999998887665554443322222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc
Q 039402 528 SFVFWGAPTFVSVATFGTCILL-NVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLV 606 (1496)
Q Consensus 528 ~~~~~~~p~~v~~~~f~~~~~~-~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 606 (1496)
.........+ .++..+.+.+. .+.+++|.+..++.+...+..|+..+...+..+.++.+|.+|+.+|++.++..+...
T Consensus 1192 ~~~~~~~~~~-~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~ 1270 (1522)
T TIGR00957 1192 AVRLECVGNC-IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQI 1270 (1522)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 1111111111 11222333333 567999999999999999999999999999999999999999999997654332111
Q ss_pred -cCCCCC--CCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-
Q 039402 607 -EKQPSG--SSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT- 682 (1496)
Q Consensus 607 -~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~- 682 (1496)
...+.. +..+.|+++|++|+|+.+ .+++|+|+||+|++||++||||++|||||||+++|+|+++|++|+|.+||.
T Consensus 1271 ~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1271 QETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN 1349 (1522)
T ss_pred cCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEE
Confidence 111111 234579999999999743 357999999999999999999999999999999999999999999999994
Q ss_pred ------------eEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHH
Q 039402 683 ------------KAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750 (1496)
Q Consensus 683 ------------~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 750 (1496)
++||||+|.+|+|||||||....++++++..++++.|++++.++.+|+|.+|.+||+|.+||||||||
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr 1429 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQL 1429 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHH
Confidence 59999999999999999998333688889999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHh
Q 039402 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
++||||++++|+|+|||||||+||+++.+.| ++.++...+++|+|+|+||++.+..+|+|+||++|+|++.|+|+|+++
T Consensus 1430 l~LARALLr~~~ILiLDEaTSalD~~Te~~I-q~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1430 VCLARALLRKTKILVLDEATAAVDLETDNLI-QSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999998777 456676778999999999999999999999999999999999999998
Q ss_pred cCcchHHHHHH
Q 039402 831 SGTDFMELVGA 841 (1496)
Q Consensus 831 ~~~~~~~~~~~ 841 (1496)
+++.|.+++..
T Consensus 1509 ~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1509 QRGIFYSMAKD 1519 (1522)
T ss_pred CCCHHHHHHHH
Confidence 88888887653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-61 Score=614.36 Aligned_cols=200 Identities=20% Similarity=0.350 Sum_probs=169.1
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
..|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+++. .++
T Consensus 311 ~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 311 PLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred ceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 36999999999964 35999999999999999999999999999999999999999999999741 269
Q ss_pred EEEcccc--cccc-cchhhccCC-CCCCcHHHHHHHHHHcCCcH-HHHhccCCcccccccCCCCCCchHHHHHHHHHHHc
Q 039402 1324 SIIPQDP--VMFE-GTVRSNLDP-LEESTDEQIWEALDKCQLGD-EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL 1398 (1496)
Q Consensus 1324 ~iIpQdp--~LF~-gTIR~NLdp-~~~~sd~eI~~aL~~~~L~~-~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL 1398 (1496)
+|+||++ .+.. .|+.+++.. .....++++.+.|+..++.+ ..... ...||||||||++||||++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~-----------~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEE-----------TRRFSGGEKARLVLALIVW 446 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCc-----------hhhCCHHHHHHHHHHHHHh
Confidence 9999985 3443 378887632 22334567788888888753 22222 2468999999999999999
Q ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEe-EecChhhHhh
Q 039402 1399 KRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIE-EFDNPANLLE 1469 (1496)
Q Consensus 1399 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~Iv-E~g~p~~Ll~ 1469 (1496)
++|++|||||||++||..+...+.+.|++. +.|||+|+|+...+.. ||+|++|++|+++ ..|++++..+
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999999999999999999999886 4599999999999976 9999999999998 5688888753
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-59 Score=541.65 Aligned_cols=522 Identities=21% Similarity=0.299 Sum_probs=417.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 039402 312 LYTLASYVGPYLIDTFVQYLNGRRDFE---NEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAALIAMIYNKGLTL 388 (1496)
Q Consensus 312 ~~~~~~~~~P~ll~~~i~~~~~~~~~~---~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l 388 (1496)
..-.+....|++++..++-+.+.+..+ ......+.+++++.+..+.++....+....+..++-......+|++.+.+
T Consensus 41 ~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~l 120 (591)
T KOG0057|consen 41 GAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSL 120 (591)
T ss_pred hhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334666778999999999886322212 12234555677777888888888888888889999899999999999999
Q ss_pred CcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 039402 389 SSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGIASLAAL-FGTVIVMLVNIPLGRVQE 466 (1496)
Q Consensus 389 s~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l-~~~~~~~~~~~~~~~~~~ 466 (1496)
+.+.+.+..+|++.+.|..-...|.++.. .+..+.-..+++.+....++...|.+..+.. ..+.....+.......-.
T Consensus 121 d~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn 200 (591)
T KOG0057|consen 121 DLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRN 200 (591)
T ss_pred hHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHH
Confidence 99999999999999999988888888653 3445556667888888889999997654433 333344445556678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 039402 467 NFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIIN-LRKRETGWLKKYVYTSAISSFVFWG--APTFVSVATF 543 (1496)
Q Consensus 467 ~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~-~R~~E~~~l~~~~~~~~~~~~~~~~--~p~~v~~~~f 543 (1496)
+++++++++.++-.+..-+.|.|-.+||.|+-|+...++... +++.|...++....+. +.++..-. +..++.++..
T Consensus 201 ~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~-~lnfgQ~~iFsv~~~~im~l 279 (591)
T KOG0057|consen 201 RFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLA-FLNFGQKAIFSVALTFIMVL 279 (591)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888754 3444444333332222 22221111 1111222222
Q ss_pred HHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCccEEEEee
Q 039402 544 GTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDG 623 (1496)
Q Consensus 544 ~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~ 623 (1496)
+..-+.++.+|.+...-..+++..|..|+..|...+..+.|+..-++-.......++...+ ...|....+..|+++|+
T Consensus 280 ~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~--~~~~i~~~~~~I~F~dV 357 (591)
T KOG0057|consen 280 GSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE--AALPIELFGGSIEFDDV 357 (591)
T ss_pred HhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh--ccCCcccCCCcEEEEee
Confidence 3333456789999999999999999999999999999999988877765443322221111 11122233456999999
Q ss_pred EEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eEEEccCC
Q 039402 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSP 690 (1496)
Q Consensus 624 ~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~yv~Q~~ 690 (1496)
+|+|. +++++|+++||+|++||++||+|+|||||||++++|+++++ ++|+|.+||. +|||||+.
T Consensus 358 ~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~ 434 (591)
T KOG0057|consen 358 HFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDS 434 (591)
T ss_pred EEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcc
Confidence 99997 34679999999999999999999999999999999999999 9999999994 69999999
Q ss_pred ccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecC
Q 039402 691 WIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDP 769 (1496)
Q Consensus 691 ~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep 769 (1496)
.+||+||.+||.+|.+ ...++..++++..++++-+..+|+|++|.+||+|..|||||||||+||||+.+||+|+++|||
T Consensus 435 ~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEa 514 (591)
T KOG0057|consen 435 VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEA 514 (591)
T ss_pred cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCc
Confidence 9999999999999986 566777788888899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHHHH
Q 039402 770 FSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVG 840 (1496)
Q Consensus 770 ~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~ 840 (1496)
||+||.+|++.+++. +.....+||+|+|.|+++.++.||+|+++++|++.+.|+++|++.+.+.|.+++.
T Consensus 515 TS~LD~~TE~~i~~~-i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~ 584 (591)
T KOG0057|consen 515 TSALDSETEREILDM-IMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWT 584 (591)
T ss_pred ccccchhhHHHHHHH-HHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhc
Confidence 999999999999875 4457789999999999999999999999999999999999999997777777653
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=602.30 Aligned_cols=199 Identities=22% Similarity=0.336 Sum_probs=167.1
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+ |.++ +|+
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999 4332 699
Q ss_pred EEcccc-ccccc-chhhccCCC-CCC--c--HHHHHHHHHHcCCcH-HHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDP-VMFEG-TVRSNLDPL-EES--T--DEQIWEALDKCQLGD-EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp-~LF~g-TIR~NLdp~-~~~--s--d~eI~~aL~~~~L~~-~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
|+||++ .++.. |+++|+... ... . +.++.+.|+..++.+ ... .+ ...||||||||++||||
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~~LSgGekqRl~la~a 454 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAM-------TP----VKALSGGERNRLLLARL 454 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHh-------Ch----hhhCCHHHHHHHHHHHH
Confidence 999986 46655 999999632 111 2 445677787777642 222 22 24699999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEe-CCeEeEe-cChhhHhh
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLN-HGLIEEF-DNPANLLE 1469 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~-~G~IvE~-g~p~~Ll~ 1469 (1496)
++++|++|||||||++||..+...+.+.|++. ++|||+|||+.+.+.. ||+|++|+ +|+|.++ |++.+.++
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999875 5699999999999875 99999998 8999986 56666643
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=627.90 Aligned_cols=211 Identities=22% Similarity=0.275 Sum_probs=177.1
Q ss_pred eEEEEeEEeEeCC-----------CCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC--CccEEEECCeeC
Q 039402 1245 KIDLLDLQVRYAP-----------QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP--AAGQILIDGIDI 1311 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~-----------~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep--~~G~I~IDG~dI 1311 (1496)
.+.|+||++..+. +...+|+|||++++|||.+||+|+||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6999999988742 123699999999999999999999999999999999999763 689999999886
Q ss_pred CCCChHHHhcccEEEccccccccc-chhhccCCC------CCCcHH----HHHHHHHHcCCcHHHHhccCCcccccccCC
Q 039402 1312 SLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLDPL------EESTDE----QIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380 (1496)
Q Consensus 1312 ~~i~l~~LR~~i~iIpQdp~LF~g-TIR~NLdp~------~~~sd~----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1380 (1496)
. ...+|+.++|++|++.++.. |+||||... .+.+++ .+.++++..+|.+. .|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 24577889999999987764 999999521 122332 36678888887543 356666544
Q ss_pred -CCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcch-h-cccCEEEEEeC-
Q 039402 1381 -ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITS-V-IDSDLVLLLNH- 1455 (1496)
Q Consensus 1381 -~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~t-i-~~~DrIlVL~~- 1455 (1496)
..||||||||++|||+|+.+|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++. + ..||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6799999999999999999999999999999999999999999999864 47899999999984 4 56999999996
Q ss_pred CeEeEecChh
Q 039402 1456 GLIEEFDNPA 1465 (1496)
Q Consensus 1456 G~IvE~g~p~ 1465 (1496)
|+++.+|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999874
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-59 Score=529.65 Aligned_cols=529 Identities=21% Similarity=0.313 Sum_probs=402.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 306 TGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVE------CLCQRFRVFRLQQLGIRMRAALIA 379 (1496)
Q Consensus 306 ~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~------~l~~~~~~~~~~~~~~~ir~~L~~ 379 (1496)
..++..+.-+.....|.+.+.+++-+..+..+.+ .++....+.++++ .+......|..-++..-....+-.
T Consensus 220 cl~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~---~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~ 296 (790)
T KOG0056|consen 220 CLFLLIIGRLINVSLPILSKWIVDELTAPDTFQY---SLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIET 296 (790)
T ss_pred HHHHHHHHHHHhhhhHHhHHHHHHhhcCcchhhH---HHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHH
Confidence 3445555566677779999999998875433322 2222222222222 334444455555566666667788
Q ss_pred HHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHH
Q 039402 380 MIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYI-HDPWLVLFEVALSILILYKNL-GIASLAALFGTVIVMLV 457 (1496)
Q Consensus 380 ~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~-~~~~~~pl~i~~~~~lL~~~l-g~~~l~~l~~~~~~~~~ 457 (1496)
.+|++.+.||....-+..+||+...|....+.+. +..++ ..+--..+-++++++..+... -|-.++.++.+.+...+
T Consensus 297 ~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~ 375 (790)
T KOG0056|consen 297 ELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYV 375 (790)
T ss_pred HHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhhe
Confidence 8999999999998888899999999887666665 33222 222223344555544333222 23334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 458 NIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSK----IINLRKRETGWLKKYVYTSAISSFVFWG 533 (1496)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~----i~~~R~~E~~~l~~~~~~~~~~~~~~~~ 533 (1496)
...+.....++++++..+-.+-...-.+.+-|..++|.|+-|+...++ |.+..++|.+.+....++......++-.
T Consensus 376 Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~l 455 (790)
T KOG0056|consen 376 TIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL 455 (790)
T ss_pred eeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 455566777888888777777777788999999999999999765544 4555555655544433333332222211
Q ss_pred HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCC
Q 039402 534 APTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGS 613 (1496)
Q Consensus 534 ~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~ 613 (1496)
.++....+.+|.+..+.++.|...-+..++..|..|++.+.....+++.+.+-++|+.+.+++++.-.+.....|-..
T Consensus 456 --gll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~ 533 (790)
T KOG0056|consen 456 --GLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKV 533 (790)
T ss_pred --HHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccc
Confidence 122222344555667789999999999999999999999999999999999999999999976544333222222223
Q ss_pred CCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------
Q 039402 614 SETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----------- 682 (1496)
Q Consensus 614 ~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~----------- 682 (1496)
..+.|+++|++|+|++ ++|+|+||||++++|+.+|+|||+|+||||+++++.++++..+|.|.++|+
T Consensus 534 ~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLR 611 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLR 611 (790)
T ss_pred cCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHH
Confidence 4567999999999974 689999999999999999999999999999999999999999999999995
Q ss_pred --eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 039402 683 --KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQ 759 (1496)
Q Consensus 683 --~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~ 759 (1496)
+|.|||+.-+||.||..||.++++ ...|+..++.++++.++.+-.+|+|+.|.+||||-.||||+|||||+||++.+
T Consensus 612 s~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK 691 (790)
T KOG0056|consen 612 SSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILK 691 (790)
T ss_pred HhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhc
Confidence 599999999999999999999987 34455667788999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhc-CcchHHH
Q 039402 760 DSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINS-GTDFMEL 838 (1496)
Q Consensus 760 ~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~-~~~~~~~ 838 (1496)
+|.|++|||.|||||.++++.| +.++..+.+++|-|+|.|+++.+-.||.|+++++|+|++.|+|+|++.+ ++.|.++
T Consensus 692 ~P~iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~M 770 (790)
T KOG0056|consen 692 APSIILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADM 770 (790)
T ss_pred CCcEEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHH
Confidence 9999999999999999999988 6788888899999999999999999999999999999999999999987 7889998
Q ss_pred HHHhH
Q 039402 839 VGAHE 843 (1496)
Q Consensus 839 ~~~~~ 843 (1496)
++++.
T Consensus 771 Wq~qq 775 (790)
T KOG0056|consen 771 WQAQQ 775 (790)
T ss_pred HHHHH
Confidence 87543
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-58 Score=532.67 Aligned_cols=485 Identities=20% Similarity=0.227 Sum_probs=365.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHH
Q 039402 972 VALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSII 1051 (1496)
Q Consensus 972 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~ 1051 (1496)
+++.++..++..+|+..+...+.+.-.++....+...+++|..--...+....+ +|.+.+-.++...-...++..=
T Consensus 70 l~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaP 145 (580)
T COG4618 70 LGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAP 145 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCc
Confidence 344566777888999999999999999999999999988877644333333333 3555555554432222222111
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHH
Q 039402 1052 RILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNM 1131 (1496)
Q Consensus 1052 ~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~ 1131 (1496)
..-..+++++...|++.++.+.-.++.+.+.-.--...|+--+.-++....-.++..-+..+.++|+|.|+.....+++.
T Consensus 146 W~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~ 225 (580)
T COG4618 146 WMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWG 225 (580)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHH
Confidence 12233455556677776655443333322222222223333333444555667788889999999999999887777766
Q ss_pred HHHHHHhh----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1132 KLMDEYSR----PTFHIAAAMEWL-GLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACD 1206 (1496)
Q Consensus 1132 ~~~d~~~~----~~~~~~~~~~wl-~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~ 1206 (1496)
+....+.. +.-.......-- .+|+- +.+.+.... ..+...|.+++|..-..-...-..-.++...+..|-+
T Consensus 226 ~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~-lQs~iLg~G---A~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq 301 (580)
T COG4618 226 RFNAAYLSAQERASDRNGAFGALSRALRMA-LQSAVLGLG---AWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQ 301 (580)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHhcc---eeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHH
Confidence 55444333 222221111111 11111 111111111 2334578888886544433334445667788899999
Q ss_pred HHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCH
Q 039402 1207 LENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGK 1286 (1496)
Q Consensus 1207 le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGK 1286 (1496)
+-....|..|+.+.++..+++....+ -| ..+|.+.++++++.-++...++|+||||+++|||-+||||||||||
T Consensus 302 ~~~Ar~s~~Rl~~lL~~~p~~~~~m~--LP----~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGK 375 (580)
T COG4618 302 FVAARQSYKRLNELLAELPAAAERMP--LP----APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGK 375 (580)
T ss_pred HHHHHHHHHHHHHHHHhCccccCCCC--CC----CCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccH
Confidence 99999999999999875444322111 11 1268999999999766666789999999999999999999999999
Q ss_pred HHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC-CCcHHHHHHHHHHcCCcHHH
Q 039402 1287 STLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLGDEV 1365 (1496)
Q Consensus 1287 STLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i 1365 (1496)
|||.++|.|...|++|.|.+||-|+.+.+.+++-++|||.|||..||+|||.+||.-|+ +.+++.|.+|.+.++.||.|
T Consensus 376 STLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelI 455 (580)
T COG4618 376 STLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELI 455 (580)
T ss_pred HHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHH
Confidence 99999999999999999999999999999999999999999999999999999998877 77888899999999999999
Q ss_pred HhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchh
Q 039402 1366 RKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSV 1444 (1496)
Q Consensus 1366 ~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti 1444 (1496)
.++|+||||.|||+|..||||||||++||||++.+|+++|||||-||||.+-|+.+.++|.+.. +++|+|+||||++.+
T Consensus 456 l~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L 535 (580)
T COG4618 456 LRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSAL 535 (580)
T ss_pred HhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998764 689999999999999
Q ss_pred cccCEEEEEeCCeEeEecChhhHhhc
Q 039402 1445 IDSDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1445 ~~~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
..+|+|+||++|++..||+-+|.+++
T Consensus 536 ~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 536 ASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred hhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999999864
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-57 Score=620.67 Aligned_cols=470 Identities=17% Similarity=0.150 Sum_probs=362.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 039402 370 GIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGIASLAAL 448 (1496)
Q Consensus 370 ~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l 448 (1496)
+.+....+...+|++.++.+...+++++.|+|+|++++|++.+.+.+. .+..+....+.++.++++++....+..++.+
T Consensus 1026 ~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i 1105 (1560)
T PTZ00243 1026 MRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALV 1105 (1560)
T ss_pred HHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445677888999999999999999999999999999999998654 3444555555555555554433333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 449 FGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISS 528 (1496)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~ 528 (1496)
.++++...+...+.+..+..++.....++.....++|.++|+++||.|++|+.|.++..+.-+...+...+......+..
T Consensus 1106 ~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~ 1185 (1560)
T PTZ00243 1106 PCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLG 1185 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333334445555666666667777888999999999999999999999988876544433332222111111111
Q ss_pred HHHH-H-HHHHHHHHHHHHHH--HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-
Q 039402 529 FVFW-G-APTFVSVATFGTCI--LLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQP- 603 (1496)
Q Consensus 529 ~~~~-~-~p~~v~~~~f~~~~--~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~- 603 (1496)
.... . ....+.++.++.+. ...+.+++|.+..++.+...+..|+..+...+..+.++.+|++|+.++++..+.++
T Consensus 1186 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~ 1265 (1560)
T PTZ00243 1186 VRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDM 1265 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 1111 1 11111222222222 22345788988888888888999999999999999999999999999996322110
Q ss_pred cc-----------------------c-cCC-----CCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEec
Q 039402 604 DL-----------------------V-EKQ-----PSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGT 654 (1496)
Q Consensus 604 ~~-----------------------~-~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~ 654 (1496)
.. . ... +.....+.|+++|++|+|+.+ .+++|+|+||+|++||++||||+
T Consensus 1266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGr 1344 (1560)
T PTZ00243 1266 PELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGR 1344 (1560)
T ss_pred ccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECC
Confidence 00 0 000 001123469999999999643 35699999999999999999999
Q ss_pred CCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhch
Q 039402 655 VGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSL 721 (1496)
Q Consensus 655 ~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l 721 (1496)
+|||||||+++|+|+++|++|+|.+||. ++||||+|.+|+|||||||..+.++++++..++++.|++
T Consensus 1345 TGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l 1424 (1560)
T PTZ00243 1345 TGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGL 1424 (1560)
T ss_pred CCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCC
Confidence 9999999999999999999999999984 599999999999999999988778889999999999999
Q ss_pred hhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC-CCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcc
Q 039402 722 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD-SDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTH 800 (1496)
Q Consensus 722 ~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~-~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH 800 (1496)
++.++.+|.|.+|.+||+|.+||||||||++|||||+++ |+|+|||||||+||+++.+.|. +.++...+++|+|+|+|
T Consensus 1425 ~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq-~~L~~~~~~~TvI~IAH 1503 (1560)
T PTZ00243 1425 RERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ-ATVMSAFSAYTVITIAH 1503 (1560)
T ss_pred hHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHH-HHHHHHCCCCEEEEEec
Confidence 999999999999999999999999999999999999996 8999999999999999988874 56666778999999999
Q ss_pred CcCccccCCEEEEEeCCeEEEecChHHHHhc-CcchHHHHHH
Q 039402 801 QVEFLPAADLILVMKDGKITQAGKYNDLINS-GTDFMELVGA 841 (1496)
Q Consensus 801 ~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~-~~~~~~~~~~ 841 (1496)
+++.+..||+|++|++|+|++.|+++|++++ ++.|.+++..
T Consensus 1504 Rl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~ 1545 (1560)
T PTZ00243 1504 RLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEA 1545 (1560)
T ss_pred cHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999999999999974 6788887754
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-59 Score=595.02 Aligned_cols=200 Identities=19% Similarity=0.288 Sum_probs=166.9
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
...|+++||+++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++ +.+
T Consensus 506 ~~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 506 PPIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred CceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 3469999999999643 3599999999999999999999999999999999999999999999875 357
Q ss_pred cEEEcccccccccchhhccC-----CCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1323 LSIIPQDPVMFEGTVRSNLD-----PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1323 i~iIpQdp~LF~gTIR~NLd-----p~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
|+|+||++. ...++.+|.. .+...+++++.++|+..++.+.... .....||||||||++||||+
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~----------~~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhc----------CCccccCHHHHHHHHHHHHH
Confidence 999999973 2234445421 1223467888999999998642211 12357999999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEe-EecChhhH
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIE-EFDNPANL 1467 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~Iv-E~g~p~~L 1467 (1496)
+++|++|||||||++||+.+...+.+.+++. + .|||+|||+++.+.. ||+|++|++|+++ ..|++++.
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999999999999875 3 599999999999986 9999999999998 45777664
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-56 Score=569.00 Aligned_cols=513 Identities=16% Similarity=0.132 Sum_probs=381.3
Q ss_pred HHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 293 KAMFC-SVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGI 371 (1496)
Q Consensus 293 ~al~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~ 371 (1496)
..+++ .+++.+++..++.++..++..+.|++++.+++...... ....+.+++ + .++..++.....+...+.+.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~ 82 (555)
T TIGR01194 9 LALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG--QGSLFSFGG-L---CLLALLFRIGADIFPAYAGM 82 (555)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--chHHHHHHH-H---HHHHHHHHHHHHHHHHHHHH
Confidence 33677 88899999999999999999999999998875321110 011111111 1 22333445555666778899
Q ss_pred HHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039402 372 RMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGT 451 (1496)
Q Consensus 372 ~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~~ 451 (1496)
++...++..+|+|.++++....+++++|++++++++|++.+.+++..+.......+.+++++++++..-...+++.++.+
T Consensus 83 ~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~ 162 (555)
T TIGR01194 83 HIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAI 162 (555)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997655444455455455444444433333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 452 VIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEM--KFLSKIINLRKRETGWLKKYVYTSAISSF 529 (1496)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~--~~~~~i~~~R~~E~~~l~~~~~~~~~~~~ 529 (1496)
++.+.+..+..++.++...+..+..++..+...|.++|++++|.++.++ ...+++.+..++..+...+..........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
T TIGR01194 163 IIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAEN 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455566667777788888899999999999999999999854 33444433322222222111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHH---hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc-
Q 039402 530 VFWGAPTFVSVATFGTCIL---LNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDL- 605 (1496)
Q Consensus 530 ~~~~~p~~v~~~~f~~~~~---~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~- 605 (1496)
+..... .+.++.+++ ..+.++.|.+++++.+...+..|+..+...+..+.++++|++||.++++.++.++..
T Consensus 243 ~~~~~~----~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~ 318 (555)
T TIGR01194 243 FGQLLF----FLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPEL 318 (555)
T ss_pred HHHHHH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 111111 111111111 125799999999999999999999999999999999999999999998632211100
Q ss_pred --ccCC-----CCCCCCccEEEEeeEEEecCCC--CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccE
Q 039402 606 --VEKQ-----PSGSSETALDIVDGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676 (1496)
Q Consensus 606 --~~~~-----~~~~~~~~i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~ 676 (1496)
.+.. +.......++++|++|+|+..+ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~ 398 (555)
T TIGR01194 319 ELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGE 398 (555)
T ss_pred cccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 0000 1111234699999999997432 246999999999999999999999999999999999999999999
Q ss_pred EEEcCe-------------eEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCC
Q 039402 677 LKLCGT-------------KAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINL 743 (1496)
Q Consensus 677 i~~~g~-------------~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~L 743 (1496)
|.++|. ++||+|+|++|++|+++|+ ....++++.+++++.++++++++.+|+|++|. .+|
T Consensus 399 i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~L 471 (555)
T TIGR01194 399 ILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TAL 471 (555)
T ss_pred EEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccC
Confidence 999984 4899999999999999995 33456777888999999999999999999984 799
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCccccCCEEEEEeCCeEEEe
Q 039402 744 SGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPAADLILVMKDGKITQA 822 (1496)
Q Consensus 744 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 822 (1496)
|||||||++||||++++|+|+|||||||+||+++++.+.+.+++.. .+++|+|+|||+++.+..||+|++|++|++++.
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999987666443 468999999999999889999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-57 Score=520.34 Aligned_cols=529 Identities=21% Similarity=0.294 Sum_probs=432.0
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 289 VKLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQ 368 (1496)
Q Consensus 289 ~~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 368 (1496)
.....+..-.+++.++..+++..+-.++...+|+.+-++-|-+-...+.+ ....+.++....+++..+++....+...|
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~-TLv~Ltvlal~ly~~~glLd~iR~~~l~R 89 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVP-TLVMLTVLALGLYAFQGLLDAIRSRVLVR 89 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888888999999999999999999888877765544322 23445555666777888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHhHH
Q 039402 369 LGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW------YIHDPWLVLFEVALSILILYKNLGI 442 (1496)
Q Consensus 369 ~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~------~~~~~~~~pl~i~~~~~lL~~~lg~ 442 (1496)
+|.++-..|...+|.-+++............+.+ .|.+.+..|.. .+..+|. |+.+.+ ++++.-.+|+
T Consensus 90 ig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~-P~yl~v-~fl~Hp~lG~ 163 (580)
T COG4618 90 IGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWM-PLYLAV-IFLFHPWLGL 163 (580)
T ss_pred HHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchH-HHHHHH-HHHHHHHHHH
Confidence 9999999999999999976555443222223332 58888888853 4555665 544433 3556668899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 443 ASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVY 522 (1496)
Q Consensus 443 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~ 522 (1496)
.+++|.++++.+..+|-.++ ++--++-.+..-+|.......++|..+|+.+|......+++.+.....+.+......
T Consensus 164 ~a~~ga~iLv~la~ln~~~t---~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd 240 (580)
T COG4618 164 IALAGAIILVVLALLNERAT---RKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASD 240 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88888888887777765554 444555677778888999999999999999999999999999888877777666555
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 039402 523 TSAISSFVFWGAPTFV--SVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDD 600 (1496)
Q Consensus 523 ~~~~~~~~~~~~p~~v--~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e 600 (1496)
.......+.-..-.+. .++..|.|+++.+++|+|.+++.-.+..-.-.|+......+.++..++.|.+|++++|....
T Consensus 241 ~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p 320 (580)
T COG4618 241 RNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELP 320 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4444333333333333 34556788888999999999999888888888999999999999999999999999997543
Q ss_pred CCCccccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEc
Q 039402 601 LQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC 680 (1496)
Q Consensus 601 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~ 680 (1496)
..... .+-+.++..+.++++++.-+ +.++++++|+||++++||-++||||||||||||.++|.|..+|.+|.|++|
T Consensus 321 ~~~~~---m~LP~P~g~L~Ve~l~~~PP-g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLD 396 (580)
T COG4618 321 AAAER---MPLPAPQGALSVERLTAAPP-GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLD 396 (580)
T ss_pred cccCC---CCCCCCCceeeEeeeeecCC-CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEec
Confidence 32221 22223456799999999664 456899999999999999999999999999999999999999999999999
Q ss_pred C-------------eeEEEccCCccCCCcHHHHhc-cCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChH
Q 039402 681 G-------------TKAYVAQSPWIQSGKIEDNIL-FGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGG 746 (1496)
Q Consensus 681 g-------------~~~yv~Q~~~i~~~ti~eNI~-~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 746 (1496)
| ++||.||+..+|.|||.|||. |+.+.|.+++-++.+..+.++-+-.+|+|++|.||+.|.+||||
T Consensus 397 ga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgG 476 (580)
T COG4618 397 GADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGG 476 (580)
T ss_pred chhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCch
Confidence 8 479999999999999999996 77788999888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChH
Q 039402 747 QKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYN 826 (1496)
Q Consensus 747 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~ 826 (1496)
|||||+||||+|.||.+++||||-|+||.+.+..+.+.+..-..+|.|+|+|||+++.+..+|+|++|++|++...|+.+
T Consensus 477 QRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~ 556 (580)
T COG4618 477 QRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPRE 556 (580)
T ss_pred HHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHH
Confidence 99999999999999999999999999999999998766555556799999999999999999999999999999999999
Q ss_pred HHHhc
Q 039402 827 DLINS 831 (1496)
Q Consensus 827 ~l~~~ 831 (1496)
|++++
T Consensus 557 eVLa~ 561 (580)
T COG4618 557 EVLAK 561 (580)
T ss_pred HHHHH
Confidence 98753
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=558.83 Aligned_cols=485 Identities=24% Similarity=0.358 Sum_probs=346.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC--eeEEEccCCccCC
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQS 694 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g--~~~yv~Q~~~i~~ 694 (1496)
.+.+++++++|+ ++++++|+||++.+|++++|||+|||||||||++|.|+..|++|+|...+ +++|++|++....
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 478899999994 57899999999999999999999999999999999999999999999987 7999999999875
Q ss_pred C-cHHHHhccCCCCC---HHHHHHHHH---------------------HhchhhHHHhc--cCCCcccccCCCCCCChHH
Q 039402 695 G-KIEDNILFGKEMN---RERYNAVLD---------------------ACSLKKDLEIL--SFGDQTVIGERGINLSGGQ 747 (1496)
Q Consensus 695 ~-ti~eNI~~g~~~~---~~~~~~v~~---------------------~~~l~~d~~~l--~~g~~t~ig~~g~~LSGGQ 747 (1496)
. |+.|.+..+...- ..+++.... ...++.+++.. ..|.... .....+|||||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~ 158 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGW 158 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHH
Confidence 5 9999998875311 111111111 00111112111 1233322 56778999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEE-EecCh
Q 039402 748 KQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKIT-QAGKY 825 (1496)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~G~~ 825 (1496)
|.||+|||||..+||+|||||||++||..+..++- +.+.. .+| |+|+||||.+||.. |++|+.++.|++. +.|+|
T Consensus 159 r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe-~~L~~-~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 159 RRRVALARALLEEPDLLLLDEPTNHLDLESIEWLE-DYLKR-YPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHH-HHHHh-CCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCH
Confidence 99999999999999999999999999999998884 44433 346 99999999999987 9999999999876 77888
Q ss_pred HHHHhcCcchHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccchhHHHHHh
Q 039402 826 NDLINSGTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEERE 905 (1496)
Q Consensus 826 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 905 (1496)
+.+++....-.+. ... ..+ . ++++.+
T Consensus 236 ~~~~~~r~~~~~~----~~~--------------------------------------------~~~-~-----~~~~~~ 261 (530)
T COG0488 236 SSYLEQKAERLRQ----EAA--------------------------------------------AYE-K-----QQKELA 261 (530)
T ss_pred HHHHHHHHHHHHH----HHH--------------------------------------------HHH-H-----HHHHHH
Confidence 7765432100000 000 000 0 000000
Q ss_pred hccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 039402 906 KGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLAR 985 (1496)
Q Consensus 906 ~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~ 985 (1496)
+ -..++.. ..
T Consensus 262 ~-------~~~~i~r------------------------------~~--------------------------------- 271 (530)
T COG0488 262 K-------EQEWIRR------------------------------GK--------------------------------- 271 (530)
T ss_pred H-------HHHHHHH------------------------------HH---------------------------------
Confidence 0 0000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039402 986 STLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAW 1065 (1496)
Q Consensus 986 ~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 1065 (1496)
.
T Consensus 272 --------------------------------------------~----------------------------------- 272 (530)
T COG0488 272 --------------------------------------------A----------------------------------- 272 (530)
T ss_pred --------------------------------------------h-----------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHH
Q 039402 1066 QVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIA 1145 (1496)
Q Consensus 1066 ~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~ 1145 (1496)
...++++
T Consensus 273 -------------------~~~~~k~------------------------------------------------------ 279 (530)
T COG0488 273 -------------------AASKAKK------------------------------------------------------ 279 (530)
T ss_pred -------------------ccchHHH------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHh--hcC
Q 039402 1146 AAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQY--TCI 1223 (1496)
Q Consensus 1146 ~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~--~~~ 1223 (1496)
.+..+...+|+.+- ...
T Consensus 280 -------------------------------------------------------------a~sr~k~l~k~~~~~~~~~ 298 (530)
T COG0488 280 -------------------------------------------------------------AKSRIKRLEKLEARLAEER 298 (530)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHhhhhhcc
Confidence 00000011111110 001
Q ss_pred CCCCCCCcc-CCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCcc
Q 039402 1224 PSEPPLAIE-ESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1302 (1496)
Q Consensus 1224 ~~E~~~~~~-~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G 1302 (1496)
|.+...... ...+++.-+.+-.++++|+++.|.++ .++++++||.|.+|+||||||+||+|||||+++|.|-..|.+|
T Consensus 299 ~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G 377 (530)
T COG0488 299 PVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG 377 (530)
T ss_pred cccccccceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCc
Confidence 111000000 00011111224469999999999765 5699999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCChHHHhcccEEEcccc-cccc-cchhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccC
Q 039402 1303 QILIDGIDISLIGLHDLRSRLSIIPQDP-VMFE-GTVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1379 (1496)
Q Consensus 1303 ~I~IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~-gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~ 1379 (1496)
+|.+.- .-++||.+|+- .++. .|+-+++.... +..+.++...|.+.++...-... +|
T Consensus 378 ~v~~g~-----------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~------~v--- 437 (530)
T COG0488 378 TVKVGE-----------TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEK------PV--- 437 (530)
T ss_pred eEEeCC-----------ceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhC------ch---
Confidence 999863 23699999997 4443 38999987543 44588999999999986543322 22
Q ss_pred CCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeE
Q 039402 1380 GENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLI 1458 (1496)
Q Consensus 1380 G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~I 1458 (1496)
..||||||-|+.||+.++.+|.+|||||||.+||.+|-..+.++|.++ +.|||+|+|+-..+.. |++|+++++ ++
T Consensus 438 -~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~ 513 (530)
T COG0488 438 -GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KV 513 (530)
T ss_pred -hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ce
Confidence 469999999999999999999999999999999999999999999876 5699999999999987 999999999 88
Q ss_pred eEe-cChhhHhhc
Q 039402 1459 EEF-DNPANLLEN 1470 (1496)
Q Consensus 1459 vE~-g~p~~Ll~~ 1470 (1496)
.++ |++++..+.
T Consensus 514 ~~~~g~y~~y~~~ 526 (530)
T COG0488 514 EEFEGGYEDYLEQ 526 (530)
T ss_pred eEcCCCHHHHHHh
Confidence 888 888887754
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=597.15 Aligned_cols=475 Identities=20% Similarity=0.192 Sum_probs=364.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHH
Q 039402 364 FRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGI 442 (1496)
Q Consensus 364 ~~~~~~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~ 442 (1496)
+...+.+.+.-..+...+|++.++.+...+++.++|+++|+++.|++.+.+.+. .+..+....+.+++.+++++...++
T Consensus 947 ~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~ 1026 (1490)
T TIGR01271 947 LPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPY 1026 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777888888999999999999999999999999999999998654 4445555555555555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 443 ASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVY 522 (1496)
Q Consensus 443 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~ 522 (1496)
.+++.+.++++...+..++.+..++.++.....+....+...|.++|+.+||.|++|+.|.++..+.-+...+.......
T Consensus 1027 l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1106 (1490)
T TIGR01271 1027 IFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLS 1106 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444445555566666677778888999999999999999999999998887654432211111111
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 039402 523 TSAISSFVFWG-APTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDL 601 (1496)
Q Consensus 523 ~~~~~~~~~~~-~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~ 601 (1496)
...+....... ...++..+++ ..+.....++|.+-.++++...+..++..+...+..+..+.+|++||.+|++.++.
T Consensus 1107 ~~~wl~~~~~~i~~~~~~~~~~--l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e 1184 (1490)
T TIGR01271 1107 TLRWFQMRIDIIFVFFFIAVTF--IAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQE 1184 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 11111111100 0011111111 11112234566666666677777888888888899999999999999999976543
Q ss_pred CCcccc--------------C-C-C-CCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHH
Q 039402 602 QPDLVE--------------K-Q-P-SGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLS 664 (1496)
Q Consensus 602 ~~~~~~--------------~-~-~-~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~ 664 (1496)
.+...+ . . + .-+..+.|+++|++|+|+.+ .+++|+|+||+|++||++||||++|||||||++
T Consensus 1185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~ 1263 (1490)
T TIGR01271 1185 EPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLS 1263 (1490)
T ss_pred cccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 221100 0 0 0 01223579999999999743 468999999999999999999999999999999
Q ss_pred HHhcCCCCCccEEEEcCe-------------eEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCC
Q 039402 665 CILGEVPKISGTLKLCGT-------------KAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFG 731 (1496)
Q Consensus 665 ~ilG~~~~~~G~i~~~g~-------------~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g 731 (1496)
+|+|+++ .+|+|.++|. ++||||+|.+|+|||||||....++++++..++++.|++.+.++.+|.|
T Consensus 1264 lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~G 1342 (1490)
T TIGR01271 1264 ALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDK 1342 (1490)
T ss_pred HHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccc
Confidence 9999997 7999999984 5999999999999999999877778899999999999999999999999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEE
Q 039402 732 DQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLI 811 (1496)
Q Consensus 732 ~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 811 (1496)
.+|.+||+|.+||||||||++|||||+++|+|+|||||||+||+++.+.|. +.++...+++|||+|||+++.+..+|+|
T Consensus 1343 Ldt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~-~~L~~~~~~~TvI~IaHRl~ti~~~DrI 1421 (1490)
T TIGR01271 1343 LDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIR-KTLKQSFSNCTVILSEHRVEALLECQQF 1421 (1490)
T ss_pred cccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999988885 5566667899999999999999999999
Q ss_pred EEEeCCeEEEecChHHHHhcCcchHHHHHHhH
Q 039402 812 LVMKDGKITQAGKYNDLINSGTDFMELVGAHE 843 (1496)
Q Consensus 812 ~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~~ 843 (1496)
++|++|+|++.|+++++++.++.|.+++....
T Consensus 1422 lvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1422 LVIEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred EEEECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 99999999999999999987778888876543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-56 Score=567.59 Aligned_cols=511 Identities=13% Similarity=0.082 Sum_probs=400.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 927 VPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGS----TLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFN 1002 (1496)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~----~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~ 1002 (1496)
..+.+++.++...+.+..++++....+.....+. .... .++.++++++++..+..++...+......+..+.+|+
T Consensus 98 l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~-~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 98 LILIAFLLVSRTYLSVYVATLDGQIESSIVRRSP-RNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566667777778877755432110110 0011 1222333344445555555666666667777788888
Q ss_pred HHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Q 039402 1003 EMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQ-VAWQVFIVFVPAVGSCIWY 1081 (1496)
Q Consensus 1003 ~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~ip~~~l~~~~ 1081 (1496)
+.+++....++.|||. ++|++++|+++|++.+...+...+..++..++.+++.++.+.. .+|.+.++++...++..++
T Consensus 177 ~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i 255 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVV 255 (659)
T ss_pred HHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 8888877888889987 8999999999999999999999999999999999988887775 8898888877777788888
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1082 QQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSI 1161 (1496)
Q Consensus 1082 ~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~ 1161 (1496)
.+++.+..+++.+......+.+.+.+.|.++|+.+||+|+.++.+.+++.+..++..+..........++....+++...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 335 (659)
T TIGR00954 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKY 335 (659)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 88888888888888888999999999999999999999999999999999888888887777777777776666665432
Q ss_pred HHH---H-HHHHHHHhc----CCCCCHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCC-
Q 039402 1162 TFA---F-TLVFLISIP----KGFIDPAI-AGLAVTY---GLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPP- 1228 (1496)
Q Consensus 1162 ~~~---~-~~~~~~~~~----~g~~~~g~-~gl~l~y---~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~- 1228 (1496)
... . .....+... .|.++.|. ++..++| ..++...+..+...+.++.....+.+|+.++.+.++|..
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~ 415 (659)
T TIGR00954 336 TWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKS 415 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 1 111112222 25677664 3434444 456677888899999999999999999999986533210
Q ss_pred ------CCcc--CC-----CCC------CCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHH
Q 039402 1229 ------LAIE--ES-----RPN------DSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTL 1289 (1496)
Q Consensus 1229 ------~~~~--~~-----~~~------~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTL 1289 (1496)
...+ +. .++ ......+.|+++||+++|+++ +++|+|+||+|++||++||+|+||||||||
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTL 494 (659)
T TIGR00954 416 GNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSL 494 (659)
T ss_pred ccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHH
Confidence 0000 00 000 000134679999999999644 469999999999999999999999999999
Q ss_pred HHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCC--------CCCcHHHHHHHHHHcCC
Q 039402 1290 IQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL--------EESTDEQIWEALDKCQL 1361 (1496)
Q Consensus 1290 l~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~--------~~~sd~eI~~aL~~~~L 1361 (1496)
+++|.|+++|++|+|.+|+ |++++++||+|.+|++|+|+|+... .+.++++++++++++++
T Consensus 495 l~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 563 (659)
T TIGR00954 495 FRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL 563 (659)
T ss_pred HHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC
Confidence 9999999999999999874 6789999999999999999999632 24678899999999999
Q ss_pred cHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCc
Q 039402 1362 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRI 1441 (1496)
Q Consensus 1362 ~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl 1441 (1496)
.+++.. |.|+|+..+ .+.+||||||||++||||++++|++||||||||+||+++++.+++.+++. ++|+|+||||+
T Consensus 564 ~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~ 639 (659)
T TIGR00954 564 THILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRK 639 (659)
T ss_pred HHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCch
Confidence 999877 899999876 56799999999999999999999999999999999999999999999874 89999999999
Q ss_pred chhcccCEEEEEeC
Q 039402 1442 TSVIDSDLVLLLNH 1455 (1496)
Q Consensus 1442 ~ti~~~DrIlVL~~ 1455 (1496)
+++..||+|++|+.
T Consensus 640 ~~~~~~d~il~l~~ 653 (659)
T TIGR00954 640 SLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHhCCEEEEEeC
Confidence 99999999999973
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-57 Score=570.67 Aligned_cols=191 Identities=23% Similarity=0.330 Sum_probs=163.5
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.++++|++++|.. ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 5999999999964 25999999999999999999999999999999999999999999986 1599
Q ss_pred EEcccccc-cccchhhccCCC-CCC-cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 039402 1325 IIPQDPVM-FEGTVRSNLDPL-EES-TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS 1401 (1496)
Q Consensus 1325 iIpQdp~L-F~gTIR~NLdp~-~~~-sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~ 1401 (1496)
|+||++.+ ++.|+++|+... ..+ .+..+.++|+..++.+...+. ...||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-----------~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKN-----------VKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCC-----------cccCCHHHHHHHHHHHHHhcCC
Confidence 99999875 466999999632 122 234567788888886543322 3468999999999999999999
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecC
Q 039402 1402 KILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDN 1463 (1496)
Q Consensus 1402 ~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~ 1463 (1496)
+||||||||++||.++...+.+.|++..+ ++|||+|+|++..+.. ||||++|++ ++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999998643 7899999999999876 999999965 8877766
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-54 Score=543.37 Aligned_cols=508 Identities=15% Similarity=0.139 Sum_probs=366.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 291 LIKAMFCSVWKDVLVTGFLTVLYTLASYVG-PYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQL 369 (1496)
Q Consensus 291 l~~al~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 369 (1496)
+++.+++.+++.++...++.++..++.++. |++.+.+++.+... ....+.+++.+++.. ++.....+...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS---LLVLPEFLGLLLLLM----AVTLGSQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 567778888888998888999988888774 77778888765321 111111111111111 2233444556667
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039402 370 GIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALF 449 (1496)
Q Consensus 370 ~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~ 449 (1496)
+.++...++..+|+|.++++....+++++|+++|++++|++.+..++..+..++...+.+++++++++..-+..+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 78888888999999999999999999999999999999999999876556667777777777777666655555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 450 GTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQG--WEMKFLSKIINLRKRETGWLKKYVYTSAIS 527 (1496)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~--wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~ 527 (1496)
++++...+...+.++..+..++.++..+++.+.+.|.++|++++++.+ .++.+.+++.+..++..+...+........
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSA 235 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 555556666777788888888899999999999999999999997433 233445555443322221111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 039402 528 SFVFWGAPTFVSVATFGTCILLNVP---LESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPD 604 (1496)
Q Consensus 528 ~~~~~~~p~~v~~~~f~~~~~~~~~---L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~ 604 (1496)
.... .++..+.++.+++.++. .+.+.+..+..+...+..|+..+...+..+.+++.+++|+.+++..++.++.
T Consensus 236 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~ 311 (547)
T PRK10522 236 VNWS----NIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF 311 (547)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 1111 11111122222222211 2222222222233346689999999999999999999999999755432211
Q ss_pred cccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--
Q 039402 605 LVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-- 682 (1496)
Q Consensus 605 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-- 682 (1496)
. ...+. +....++++|++|+|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 312 ~-~~~~~-~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 387 (547)
T PRK10522 312 P-RPQAF-PDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (547)
T ss_pred c-ccccc-CcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC
Confidence 1 11111 11236999999999962 357999999999999999999999999999999999999999999999884
Q ss_pred -----------eEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 683 -----------KAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 683 -----------~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
++||+|+|.+|++|++|| +...++++.+++++.+++..+++. +.|. .+|.+||||||||+
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl 458 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRL 458 (547)
T ss_pred CCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHH
Confidence 589999999999999999 445666777777777777655542 2221 24889999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCccccCCEEEEEeCCeEEEe
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPAADLILVMKDGKITQA 822 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 822 (1496)
+||||++++|+++|||||||+||+++++.+.+.+.+... +++|+|+|||+++.+..||+|++|++|++++.
T Consensus 459 ~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 459 ALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999988765544332 48999999999999989999999999999876
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=556.15 Aligned_cols=491 Identities=18% Similarity=0.215 Sum_probs=379.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHH
Q 039402 974 LAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRI 1053 (1496)
Q Consensus 974 l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~ 1053 (1496)
..++.+++.--..+.....|.+.-..+-..++++.+|..-.--..+.+|+|+|-++.|.+.+++...+. ..+...-+++
T Consensus 251 ~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~-h~~w~~Plqi 329 (1381)
T KOG0054|consen 251 ASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFL-HLLWSAPLQI 329 (1381)
T ss_pred HHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHH
Confidence 334444443334444557777777788888888888888877778889999999999999999876553 3333344444
Q ss_pred HHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHH
Q 039402 1054 LGTIAVMSQ-VAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMK 1132 (1496)
Q Consensus 1054 l~~~~~~~~-~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~ 1132 (1496)
+..+.++.. +.|. +++.+.++++++-++.+.-+..+..++.....+..-....+|.++|+++||.|+||+.|.++..+
T Consensus 330 ~~~l~lLy~~LG~s-a~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~ 408 (1381)
T KOG0054|consen 330 ILALYLLYGLLGPS-ALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIED 408 (1381)
T ss_pred HHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHH
Confidence 444433332 2222 22222233344444445555555566666667777788899999999999999999999999887
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 039402 1133 LMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKII 1212 (1496)
Q Consensus 1133 ~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~ 1212 (1496)
.-++-.+.............+.......++.+++....+....+..+|..+-.++++.-.+..++..+-.....+-+..+
T Consensus 409 ~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~V 488 (1381)
T KOG0054|consen 409 LRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKV 488 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665554444333333333332222222222222222214456678878888888887777778777777888888899
Q ss_pred HHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCC-CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHH
Q 039402 1213 SVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQ 1291 (1496)
Q Consensus 1213 sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~ 1291 (1496)
|++|+.+|+..++..+...+. .+.-+.+-.|+++|.++++.++ .++.|+||||+|++||.+||||++|||||||++
T Consensus 489 S~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~ 565 (1381)
T KOG0054|consen 489 SLKRLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLS 565 (1381)
T ss_pred HHHHHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHH
Confidence 999999999766544322211 1122345579999999999763 445999999999999999999999999999999
Q ss_pred HHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCC
Q 039402 1292 TLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGK 1371 (1496)
Q Consensus 1292 ~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~g 1371 (1496)
+++|-.+..+|++.++|. ++|+||.|-+|+|||||||-...+++++.-.++++.|+|...++.+|.|
T Consensus 566 AiLGEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~G 632 (1381)
T KOG0054|consen 566 AILGEMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFG 632 (1381)
T ss_pred HHhcCcccccceEEEcCe-------------EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCC
Confidence 999999999999999984 9999999999999999999988899999999999999999999999999
Q ss_pred cccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHH-HHHHHHHHhcCCcEEEEEccCcchhcccCEE
Q 039402 1372 LDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN-LIQQTLRQHFSDCTVLTIAHRITSVIDSDLV 1450 (1496)
Q Consensus 1372 Ldt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~-~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrI 1450 (1496)
=.|.|||+|.|||||||||++||||++++++|.+||+|-|+||.++.+ ..++.|+...+++|+|.+||.++.+.+||+|
T Consensus 633 D~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~I 712 (1381)
T KOG0054|consen 633 DLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQI 712 (1381)
T ss_pred CcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEE
Confidence 999999999999999999999999999999999999999999999965 5567888888999999999999999999999
Q ss_pred EEEeCCeEeEecChhhHhhcCCcHHHHHHHHHh
Q 039402 1451 LLLNHGLIEEFDNPANLLENKSSSFSQLVAEYT 1483 (1496)
Q Consensus 1451 lVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~ 1483 (1496)
+||++|+|+|.|+++||++ .++.|.+|..+..
T Consensus 713 ivl~~G~I~~~Gty~el~~-~~~~~~~l~~~~~ 744 (1381)
T KOG0054|consen 713 IVLKDGKIVESGTYEELLK-SGGDFAELAHEEE 744 (1381)
T ss_pred EEecCCeEecccCHHHHHh-cchhHHHHhhccc
Confidence 9999999999999999995 4678888865443
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-55 Score=522.75 Aligned_cols=444 Identities=25% Similarity=0.357 Sum_probs=335.9
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++|++.+|+ ..++|+|+||++.+||++|++|+||||||||+|.|.|.++|++|+|.++|+
T Consensus 7 ~ll~~~~i~K~Fg---gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcC---CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 3588999999996 568999999999999999999999999999999999999999999999995
Q ss_pred -eEEEccCCccC-CCcHHHHhccCCCCC-------HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 -KAYVAQSPWIQ-SGKIEDNILFGKEMN-------RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 -~~yv~Q~~~i~-~~ti~eNI~~g~~~~-------~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
|+.|+|++.+. +.||.|||.+|++.. ..+.++..+ +.++.+....+ ......+||+||||-|+|
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~lg~~~~--~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARLGLDID--PDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHcCCCCC--hhhhhhhCCHHHHHHHHH
Confidence 48999999875 669999999987532 222222111 11222222111 456678999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecCh-HHHHhc
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKY-NDLINS 831 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~-~~l~~~ 831 (1496)
|||++.+++|+|||||||+|+.+..+++|+.+.+...+|.++|+|||+++++.. ||+|.||+||+.+..++. .++
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~--- 233 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET--- 233 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC---
Confidence 999999999999999999999999999997554444579999999999999866 999999999999875431 100
Q ss_pred CcchHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccchhHHHHHhhccchH
Q 039402 832 GTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEEREKGKVGF 911 (1496)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~ 911 (1496)
..++ ++
T Consensus 234 -------------------------------------------------------~~~~-------lv------------ 239 (500)
T COG1129 234 -------------------------------------------------------SEDE-------LV------------ 239 (500)
T ss_pred -------------------------------------------------------CHHH-------HH------------
Confidence 0000 00
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 912 SVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLAT 991 (1496)
Q Consensus 912 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~ 991 (1496)
+..
T Consensus 240 -------~~M---------------------------------------------------------------------- 242 (500)
T COG1129 240 -------RLM---------------------------------------------------------------------- 242 (500)
T ss_pred -------HHh----------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 039402 992 AGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVF 1071 (1496)
Q Consensus 992 ~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1071 (1496)
+||
T Consensus 243 -----------------------------vGr------------------------------------------------ 245 (500)
T COG1129 243 -----------------------------VGR------------------------------------------------ 245 (500)
T ss_pred -----------------------------hCc------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039402 1072 VPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWL 1151 (1496)
Q Consensus 1072 ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1151 (1496)
++
T Consensus 246 -------------------~~----------------------------------------------------------- 247 (500)
T COG1129 246 -------------------EL----------------------------------------------------------- 247 (500)
T ss_pred -------------------ch-----------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCc
Q 039402 1152 GLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAI 1231 (1496)
Q Consensus 1152 ~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~ 1231 (1496)
+ ..| |. ++
T Consensus 248 ---------------------------------------------------------------~--~~~---~~-~~--- 255 (500)
T COG1129 248 ---------------------------------------------------------------E--DLF---PE-PP--- 255 (500)
T ss_pred ---------------------------------------------------------------h--hhc---cc-cc---
Confidence 0 000 00 00
Q ss_pred cCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeC
Q 039402 1232 EESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI 1311 (1496)
Q Consensus 1232 ~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI 1311 (1496)
++ -+..-.++++|++..- .++|+||++++||.+||.|-=|||+|-++++|||.-++.+|+|.+||.++
T Consensus 256 ----~~--~~~~~~l~v~~l~~~~------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v 323 (500)
T COG1129 256 ----EE--GIGEPVLEVRNLSGGG------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPV 323 (500)
T ss_pred ----cc--CCCCcEEEEecCCCCC------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEc
Confidence 00 0112246777776421 58999999999999999999999999999999999999999999999988
Q ss_pred CCCChH-HHhcccEEEccccc---cc-ccchhhccCCC--CCCcHH-HHHHHHHHcCCcHHHHhc---cCCcccccccCC
Q 039402 1312 SLIGLH-DLRSRLSIIPQDPV---MF-EGTVRSNLDPL--EESTDE-QIWEALDKCQLGDEVRKK---EGKLDSKVTENG 1380 (1496)
Q Consensus 1312 ~~i~l~-~LR~~i~iIpQdp~---LF-~gTIR~NLdp~--~~~sd~-eI~~aL~~~~L~~~i~~l---p~gLdt~v~e~G 1380 (1496)
.--+++ ..+..|+|||-|-- +| .-+|++|+... ..++.. -+...-++.-..++++++ ....+.+ -
T Consensus 324 ~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~----v 399 (500)
T COG1129 324 RIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP----I 399 (500)
T ss_pred cCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch----h
Confidence 877765 58899999998863 44 55999999632 111100 122222222233344433 1233333 3
Q ss_pred CCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeE
Q 039402 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLI 1458 (1496)
Q Consensus 1381 ~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~I 1458 (1496)
.+||||.+|+++|||.|..+|+||||||||.++|..+.+.|.+.|++.. ++.+||+|+-.++.+.. ||||+||.+|+|
T Consensus 400 ~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri 479 (500)
T COG1129 400 GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRI 479 (500)
T ss_pred hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEE
Confidence 5799999999999999999999999999999999999999999999876 57999999999999984 999999999999
Q ss_pred eEecChhh
Q 039402 1459 EEFDNPAN 1466 (1496)
Q Consensus 1459 vE~g~p~~ 1466 (1496)
+..=+.++
T Consensus 480 ~~e~~~~~ 487 (500)
T COG1129 480 VGELDREE 487 (500)
T ss_pred EEEecccc
Confidence 97544443
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=529.49 Aligned_cols=503 Identities=17% Similarity=0.158 Sum_probs=372.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 302 DVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRD--FENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRMRAALIA 379 (1496)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~--~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~ir~~L~~ 379 (1496)
.++...++.++.+++....|++++.+++.+...+. +....+.+++++++..++.++... ...++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~----~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKY----LLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 46677888889999999999999999998765432 111112222233333344444443 344555555555555
Q ss_pred HHHHHHhc----CCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHH
Q 039402 380 MIYNKGLT----LSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGIAS-LAALFGTVI 453 (1496)
Q Consensus 380 ~iy~K~L~----ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~~~-l~~l~~~~~ 453 (1496)
.++++.++ .+....++ ++|++++++++|++.+.+.+. .+..+...++.++.+++.++..+++.. ++.++.+++
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 55555544 33333333 579999999999999998654 445556666777777777776566543 444455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 454 VMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWG 533 (1496)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~ 533 (1496)
...+...+.+...+..++..+..++-....+|.++|+++||.|+-|+.+.+++.+.-++..+...+.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 66677778888899999999999999999999999999999999999998888776666555555555444443333222
Q ss_pred HH----HHHHHHHHHHHHHh-c----CCcCHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 039402 534 AP----TFVSVATFGTCILL-N----VPLESGKMLS-AI---ATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDD 600 (1496)
Q Consensus 534 ~p----~~v~~~~f~~~~~~-~----~~L~~~~vft-~l---~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e 600 (1496)
.. ..+..+..+..++. . +.+|.|..+. ++ .++..+..|+..+.+.+..+.++.++.+|+.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 11222222232332 1 5688887654 33 34667789999999999999999999999999996432
Q ss_pred CCC------ccccC-----------------CCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCC
Q 039402 601 LQP------DLVEK-----------------QPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGS 657 (1496)
Q Consensus 601 ~~~------~~~~~-----------------~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~Gs 657 (1496)
... ..... .........++++|++|+|+. ++++|+|+||++++||+++|+|||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCC
Confidence 100 00000 000012245999999999852 35799999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCccEEEEcC--eeEEEccCCccCCCcHHHHhccCC--------CCCHHHHHHHHHHhchhhHHHh
Q 039402 658 GKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQSGKIEDNILFGK--------EMNRERYNAVLDACSLKKDLEI 727 (1496)
Q Consensus 658 GKSTLl~~ilG~~~~~~G~i~~~g--~~~yv~Q~~~i~~~ti~eNI~~g~--------~~~~~~~~~v~~~~~l~~d~~~ 727 (1496)
|||||+++|+|+++|++|+|.+++ .++||||+|+++++|++|||.++. ..++++..++++.+++.+.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999999875 589999999999999999999874 2456677888999999887776
Q ss_pred ccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc
Q 039402 728 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA 807 (1496)
Q Consensus 728 l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~ 807 (1496)
|.|.+|..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+. +.. .|+|+|+|||+++.++.
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~-l~~--~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRL-CRE--FGITLFSVSHRKSLWKY 644 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHH--cCCEEEEEeCchHHHHh
Confidence 889999876 5789999999999999999999999999999999999998888654 333 38999999999999989
Q ss_pred CCEEEEEeC
Q 039402 808 ADLILVMKD 816 (1496)
Q Consensus 808 ~d~i~~l~~ 816 (1496)
||++++|+.
T Consensus 645 ~d~il~l~~ 653 (659)
T TIGR00954 645 HEYLLYMDG 653 (659)
T ss_pred CCEEEEEeC
Confidence 999999973
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-54 Score=497.77 Aligned_cols=440 Identities=23% Similarity=0.374 Sum_probs=343.1
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..+++++.+..|+ +..+++||||+|++||++|++|+||+|||||+++|.|.++|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 4689999999996 567999999999999999999999999999999999999999999999996
Q ss_pred -eEEEccCCccC-CCcHHHHhccCCCC------CH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHH
Q 039402 683 -KAYVAQSPWIQ-SGKIEDNILFGKEM------NR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750 (1496)
Q Consensus 683 -~~yv~Q~~~i~-~~ti~eNI~~g~~~------~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 750 (1496)
||+|.|++-+. +.|+.|||..|.+- +. ++.++..+.+++.-| ..++..+||-|||||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd-----------p~~~V~dLsVG~qQR 148 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-----------PDAKVADLSVGEQQR 148 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC-----------ccceeecCCcchhHH
Confidence 58999999886 45999999999753 22 233333344443322 346678999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHH
Q 039402 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLI 829 (1496)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~ 829 (1496)
|.|-+|||++|+++|||||||.|-|...+++|+.+-+....|+|||+|||.++++.. ||++-||++|+++..-+ ..
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~--~~- 225 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD--PV- 225 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec--CC-
Confidence 999999999999999999999999999999997655555679999999999999876 99999999999764321 00
Q ss_pred hcCcchHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccchhHHHHHhhccc
Q 039402 830 NSGTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEEREKGKV 909 (1496)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v 909 (1496)
. + . .. ++-.
T Consensus 226 -----------------------------------~-~-------------~-----t~-------------~ela---- 234 (501)
T COG3845 226 -----------------------------------A-E-------------T-----TE-------------EELA---- 234 (501)
T ss_pred -----------------------------------C-C-------------C-----CH-------------HHHH----
Confidence 0 0 0 00 0000
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 910 GFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLL 989 (1496)
Q Consensus 910 ~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~ 989 (1496)
. + +
T Consensus 235 ----------~--------l-M---------------------------------------------------------- 237 (501)
T COG3845 235 ----------E--------L-M---------------------------------------------------------- 237 (501)
T ss_pred ----------H--------H-h----------------------------------------------------------
Confidence 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039402 990 ATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFI 1069 (1496)
Q Consensus 990 ~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1069 (1496)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 039402 1070 VFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAME 1149 (1496)
Q Consensus 1070 ~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 1149 (1496)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCC
Q 039402 1150 WLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPL 1229 (1496)
Q Consensus 1150 wl~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1229 (1496)
. ...+. .+.+
T Consensus 238 -----------------------v-G~~v~-------------------------------------------~~~~--- 247 (501)
T COG3845 238 -----------------------V-GREVV-------------------------------------------LRVV--- 247 (501)
T ss_pred -----------------------c-CCccc-------------------------------------------cccc---
Confidence 0 00000 0000
Q ss_pred CccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCe
Q 039402 1230 AIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309 (1496)
Q Consensus 1230 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~ 1309 (1496)
. ++.-|..-.++++|+++.-+.+ -+.+++|||++++||.+||.|-.|.|-+.|+.+|.|+..|.+|+|.++|.
T Consensus 248 -----~-~~~~pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~ 320 (501)
T COG3845 248 -----K-PPSTPGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGK 320 (501)
T ss_pred -----c-CCCCCCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCE
Confidence 0 1111334468999999976543 35799999999999999999999999999999999999999999999999
Q ss_pred eC-CCCChHHHh-cccEEEccccc----ccccchhhccCCCCCC----------cHHHHHHHHHHcCCcHHHHh---ccC
Q 039402 1310 DI-SLIGLHDLR-SRLSIIPQDPV----MFEGTVRSNLDPLEES----------TDEQIWEALDKCQLGDEVRK---KEG 1370 (1496)
Q Consensus 1310 dI-~~i~l~~LR-~~i~iIpQdp~----LF~gTIR~NLdp~~~~----------sd~eI~~aL~~~~L~~~i~~---lp~ 1370 (1496)
|+ ...+....| ..+++||.|.. ..+-|+.+|+-+.... .-.++.+..+ +.+++ .+.
T Consensus 321 ~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~ 395 (501)
T COG3845 321 DVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAP 395 (501)
T ss_pred eccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCC
Confidence 97 677877765 46999999984 5667999998532211 1123332221 12222 123
Q ss_pred CcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cC
Q 039402 1371 KLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SD 1448 (1496)
Q Consensus 1371 gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~D 1448 (1496)
+.+++ ..+||||+.|++-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +++.|+.|+-.|+.+.. ||
T Consensus 396 ~~~~~----a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsD 471 (501)
T COG3845 396 SPDAP----ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSD 471 (501)
T ss_pred CCCcc----hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhh
Confidence 33333 35799999999999999999999999999999999999999999998865 68999999999999987 99
Q ss_pred EEEEEeCCeEeEecChhh
Q 039402 1449 LVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1449 rIlVL~~G~IvE~g~p~~ 1466 (1496)
||.||.+|+++....|++
T Consensus 472 rIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 472 RIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred eeeeeeCCceeccccccc
Confidence 999999999999888776
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=496.15 Aligned_cols=238 Identities=35% Similarity=0.661 Sum_probs=229.4
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
|.|+|+|++++|+++.+++|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|+|||.|+.+++.+++|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999998666679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCE
Q 039402 1324 SIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKI 1403 (1496)
Q Consensus 1324 ~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~I 1403 (1496)
+||||+|.+|++|+++|++|+...+++++|++++.+++.+++.++|++||+.++|+|.+||+|||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999887889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHh
Q 039402 1404 LMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYT 1483 (1496)
Q Consensus 1404 LiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~ 1483 (1496)
|||||||++||+.+++.+++.|++.+++||||+||||++++..||||+||++|+|+|+|+|++|+++ .+.|++++.+..
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhhcc
Confidence 9999999999999999999999998889999999999999999999999999999999999999985 589999998776
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=465.58 Aligned_cols=468 Identities=21% Similarity=0.295 Sum_probs=368.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 039402 369 LGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYI-HDPWLVLFEVALSILILYKNLGIASLAA 447 (1496)
Q Consensus 369 ~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~-~~~~~~pl~i~~~~~lL~~~lg~~~l~~ 447 (1496)
++......+.-..|++.++|+.....+..+|.+---+..-..-|+...+++ ..+....+++++..++++...||.....
T Consensus 9 v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~ 88 (497)
T COG5265 9 VGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALT 88 (497)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHH
Confidence 344444556677799999999988888888877666666566666665543 3344556788888888888888655444
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 448 LF-GTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAI 526 (1496)
Q Consensus 448 l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~ 526 (1496)
.+ .+++...+.......-..+++++.++-.+-.....+.|-|..++|.|+-|+.+..+..+..+...+...|......+
T Consensus 89 t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~ 168 (497)
T COG5265 89 TLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLV 168 (497)
T ss_pred HHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHH
Confidence 44 44444444444445555566665555555567778999999999999999998888766554444333332222222
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 039402 527 SSFVFW--GAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPD 604 (1496)
Q Consensus 527 ~~~~~~--~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~ 604 (1496)
.++... .+..+....+.+..-+..+.+|.|.+....++...+..|+..+......+.|++...+++.+.+..+-...+
T Consensus 169 Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d 248 (497)
T COG5265 169 LNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSD 248 (497)
T ss_pred HHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhcc
Confidence 221110 011122223334444567889999999999999999999999999999999999999999888765433222
Q ss_pred cccCCCCC-CCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-
Q 039402 605 LVEKQPSG-SSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT- 682 (1496)
Q Consensus 605 ~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~- 682 (1496)
.....+-. .....+.+++++|.|++ .+++|+++||++++|+.++||||+|+||||++++|.+++++.+|.|.++|+
T Consensus 249 ~pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qd 326 (497)
T COG5265 249 APDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQD 326 (497)
T ss_pred CCCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchh
Confidence 21111111 23457999999999974 579999999999999999999999999999999999999999999999995
Q ss_pred ------------eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHH
Q 039402 683 ------------KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 749 (1496)
Q Consensus 683 ------------~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 749 (1496)
+|.|||+.-+||.|+..||.+|++ ..++...++.++.++++.++.+|+|++|.+||+|-.||||+||
T Consensus 327 ir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekq 406 (497)
T COG5265 327 IRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQ 406 (497)
T ss_pred HHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHH
Confidence 599999999999999999999987 5667777889999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHH
Q 039402 750 RIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI 829 (1496)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~ 829 (1496)
||++||+++++|+|++|||.|||||.||++.| +..++...+|+|.++|.|+++.+-.||.|+||++|+|++.|+|+|++
T Consensus 407 rvaiar~ilk~p~il~~deatsaldt~te~~i-q~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll 485 (497)
T COG5265 407 RVAIARTILKNPPILILDEATSALDTHTEQAI-QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELL 485 (497)
T ss_pred HHHHHHHHhcCCCEEEEehhhhHhhhhHHHHH-HHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHH
Confidence 99999999999999999999999999999888 55677777899999999999999999999999999999999999999
Q ss_pred hcCcchHHHH
Q 039402 830 NSGTDFMELV 839 (1496)
Q Consensus 830 ~~~~~~~~~~ 839 (1496)
..++.|.+++
T Consensus 486 ~~~g~ya~mw 495 (497)
T COG5265 486 AAGGLYAEMW 495 (497)
T ss_pred HcCChHHHHh
Confidence 9999888875
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=475.36 Aligned_cols=258 Identities=21% Similarity=0.408 Sum_probs=223.2
Q ss_pred HhHhHHHHHHHhhcCCCCCCCCcc------CCCC---CCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEE
Q 039402 1209 NKIISVERIFQYTCIPSEPPLAIE------ESRP---NDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIV 1279 (1496)
Q Consensus 1209 ~~~~sveRi~~~~~~~~E~~~~~~------~~~~---~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIV 1279 (1496)
..+.+++|+.+|...+.|.....+ +..+ +..||..+.|+|+|++++|+++.+++|+|+||+|++||++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 456778888888777665432111 1111 3469999999999999999765567999999999999999999
Q ss_pred cCCCCCHHHHHHHHhcccC-----CCccEEEECCeeCC--CCChHHHhcccEEEcccccccccchhhccC--C-CCCCcH
Q 039402 1280 GRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDIS--LIGLHDLRSRLSIIPQDPVMFEGTVRSNLD--P-LEESTD 1349 (1496)
Q Consensus 1280 GrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~--~i~l~~LR~~i~iIpQdp~LF~gTIR~NLd--p-~~~~sd 1349 (1496)
||||||||||+++|+|+++ |++|+|.|||+||. .+++.++|++++||||+|.+|++|+++||+ | +..+++
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~ 194 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND 194 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh
Confidence 9999999999999999997 57999999999997 456788999999999999999999999998 3 234555
Q ss_pred HHH-----HHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHH
Q 039402 1350 EQI-----WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424 (1496)
Q Consensus 1350 ~eI-----~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~ 1424 (1496)
++. .++++.+++.+ ++++.+++.|.+||||||||+|||||++++|+||||||||++||+++++.+++.
T Consensus 195 ~~~~~~~~~~~l~~~~L~~-------~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~ 267 (329)
T PRK14257 195 RKILEKIVEKSLKSAALWD-------EVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL 267 (329)
T ss_pred HHHHHHHHHHHHHHcCCcc-------hhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 554 55678887643 456778899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCc
Q 039402 1425 LRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473 (1496)
Q Consensus 1425 I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s 1473 (1496)
|++.++++|+|+|||+++++.+ ||||+||++|+|+|.|+|+++++++..
T Consensus 268 i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~~ 317 (329)
T PRK14257 268 ILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKN 317 (329)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCc
Confidence 9999999999999999999998 999999999999999999999976653
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-46 Score=431.59 Aligned_cols=193 Identities=19% Similarity=0.346 Sum_probs=163.1
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|.++||+|+|.++. ..+++++|-|.++++|++|||+|+|||||++++.+.+.|+.|.+.-.-.. +++
T Consensus 389 vi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KLP 456 (614)
T ss_pred eEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cch
Confidence 599999999998764 79999999999999999999999999999999999999999987654322 233
Q ss_pred EEcc---cccccccchhhccCC-CC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1325 IIPQ---DPVMFEGTVRSNLDP-LE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1325 iIpQ---dp~LF~gTIR~NLdp-~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
.--| |-...+-|.-+|+.| +. +-..+++...|.++||....+..| + ++||+|||.|+++||.+++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p------~----~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP------M----SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc------h----hhcccccchhHHHHHHHhc
Confidence 3333 345566777788765 34 356678889999999975443333 2 5799999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEe
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEF 1461 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~ 1461 (1496)
+|.||||||||++||.+|-....++|++. +.+||+|+|+...|.. +++|++.++|.+..+
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeec
Confidence 99999999999999999999999999876 5699999999999987 999999999998875
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=406.39 Aligned_cols=225 Identities=29% Similarity=0.458 Sum_probs=197.8
Q ss_pred EEEEeEEeEeCCC---CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC---hHHH
Q 039402 1246 IDLLDLQVRYAPQ---MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LHDL 1319 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~---~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~L 1319 (1496)
|+++||++.|... ...+|+||||+|++||..||||+||||||||++++-+|-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999763 356999999999999999999999999999999999999999999999999988876 6667
Q ss_pred hcccEEEcccccccc-cchhhccC-CCC--CCcHH----HHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 039402 1320 RSRLSIIPQDPVMFE-GTVRSNLD-PLE--ESTDE----QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1391 (1496)
Q Consensus 1320 R~~i~iIpQdp~LF~-gTIR~NLd-p~~--~~sd~----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll 1391 (1496)
|++||+|+|.+-|++ -|+.+|+. |+. ..+.+ .+.+.|+.+||.|.-..-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 899999999999998 69999997 543 34444 4567899999887766555 57899999999
Q ss_pred HHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1392 CLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1392 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
+|||||..+|+||+.|||||+|||+|.+.|.+.|++.- -+-|+++|||-++.|++ ||||.||++|+|+|.|+-.+++
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999888754 37899999999999998 9999999999999999999999
Q ss_pred hcCCc-HHHHHHHH
Q 039402 1469 ENKSS-SFSQLVAE 1481 (1496)
Q Consensus 1469 ~~~~s-~F~~l~~~ 1481 (1496)
.++.. .=++++.+
T Consensus 231 ~~Pk~~~t~~fi~~ 244 (339)
T COG1135 231 ANPKHAITQEFIGE 244 (339)
T ss_pred cCcchHHHHHHHHh
Confidence 98754 33445543
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=415.00 Aligned_cols=240 Identities=50% Similarity=0.823 Sum_probs=224.7
Q ss_pred CcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhc
Q 039402 1242 SHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321 (1496)
Q Consensus 1242 ~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~ 1321 (1496)
..|.|+++|++++|+.....+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..++|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46789999999999754356999999999999999999999999999999999999999999999999999998889999
Q ss_pred ccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 039402 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS 1401 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~ 1401 (1496)
+++++||+|.+|++|+++|+++.....+++++++++.+++.+.+..+|.|+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876555667889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHH
Q 039402 1402 KILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481 (1496)
Q Consensus 1402 ~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~ 1481 (1496)
++|||||||++||+++.+.+.+.|++..+++|+|+++|+++.+..||||++|++|++++.|+++++.+.+++.|+.++.+
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 255 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHhc
Confidence 99999999999999999999999998767899999999999999999999999999999999999998877888887653
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-45 Score=381.59 Aligned_cols=216 Identities=28% Similarity=0.441 Sum_probs=194.1
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC-CChHHHhccc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL-IGLHDLRSRL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~-i~l~~LR~~i 1323 (1496)
-|+++||+.+|... .||||||++|++||.+.|+||||||||||+++|.+|-+|++|+|.|||.++.. .++..+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999754 59999999999999999999999999999999999999999999999987743 3788999999
Q ss_pred EEEccccccccc-chhhccCCCC----CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPLE----EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~~----~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
|+|+|...||+- |+-+|+.... ..+ .+.-.+.|++++|.|.....|. +|||||+||++||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHHH
Confidence 999999999977 9999996321 222 2334567999999998888775 5699999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCC
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKS 1472 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~ 1472 (1496)
|||.-+|+|+++|||||+|||+.-..+.+.+++.. .+-|+|+|||.+....+ +|||+.||+|+|+|.|+|++++.++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 99999999999999999999999999999999876 46799999999999988 99999999999999999999998876
Q ss_pred c
Q 039402 1473 S 1473 (1496)
Q Consensus 1473 s 1473 (1496)
+
T Consensus 229 ~ 229 (240)
T COG1126 229 S 229 (240)
T ss_pred C
Confidence 4
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=421.70 Aligned_cols=264 Identities=24% Similarity=0.322 Sum_probs=221.3
Q ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCccEEEEeeEEEecC
Q 039402 550 NVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDI 629 (1496)
Q Consensus 550 ~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 629 (1496)
.+++++..+|+.+++|+.+..|+..+|..... .+|+..|+..++.+...... ..+....++++|++++|..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~ 92 (329)
T PRK14257 22 LNELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMN 92 (329)
T ss_pred cchhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecC
Confidence 35789999999999999999999988865443 56999998776644321111 1123357999999999963
Q ss_pred CCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC-----CCccEEEEcC---------------eeEEEccC
Q 039402 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG---------------TKAYVAQS 689 (1496)
Q Consensus 630 ~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~i~~~g---------------~~~yv~Q~ 689 (1496)
..+++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++| .++||||+
T Consensus 93 -~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~ 171 (329)
T PRK14257 93 -RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQK 171 (329)
T ss_pred -CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecC
Confidence 24579999999999999999999999999999999999996 5799998765 36899999
Q ss_pred CccCCCcHHHHhccCCCC---C-HH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 039402 690 PWIQSGKIEDNILFGKEM---N-RE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761 (1496)
Q Consensus 690 ~~i~~~ti~eNI~~g~~~---~-~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 761 (1496)
||++++|++|||.|+..+ + ++ .+.++++.|++.+++ ++.+++++.+|||||||||+||||++++|
T Consensus 172 ~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSgGqkqRl~LARAl~~~p 244 (329)
T PRK14257 172 PTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSGGQQQRLCIARAIALEP 244 (329)
T ss_pred CccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 999999999999987432 2 22 256677788775544 36788999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 762 DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 762 ~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
+|+||||||+|||+++.+++ .+++..+.+++|+|+|||+++++.. ||+|++|++|+|++.|+++++...
T Consensus 245 ~IlLLDEPts~LD~~~~~~i-~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 245 EVLLMDEPTSALDPIATAKI-EELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred CEEEEeCCcccCCHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999998885 5677777778999999999999887 999999999999999999998754
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=401.47 Aligned_cols=234 Identities=32% Similarity=0.526 Sum_probs=215.9
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999997544569999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EcccccccccchhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEE
Q 039402 1326 IPQDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKIL 1404 (1496)
Q Consensus 1326 IpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~IL 1404 (1496)
+||+|.+|+.|+++||.... ..+.+++.++++..++.+.+..+|.|+++.....+.+||+|||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999997533 34566788888999999999999999999888999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHH
Q 039402 1405 MLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVA 1480 (1496)
Q Consensus 1405 iLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~ 1480 (1496)
||||||++||+.+.+.+.+.|++..+++|||+++|+++.+..||+|++|++|++++.|++++++++ .+.|+.+++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 999999999999999999999998778999999999999988999999999999999999999965 577777664
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-44 Score=374.42 Aligned_cols=203 Identities=30% Similarity=0.426 Sum_probs=173.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.|+++|++.+|. +..+|+|||++|++||.++|||||||||||||+||.|+.+|++|+|.++|.
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 478999999996 568999999999999999999999999999999999999999999999993
Q ss_pred eEEEccCCccCC-CcHHHHhccCC----CCCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 KAYVAQSPWIQS-GKIEDNILFGK----EMNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 ~~yv~Q~~~i~~-~ti~eNI~~g~----~~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
+|+|+|+..+|. .|+.|||..+. ...++ +..+.++..+|.+-. ...+.+|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka-----------~~yP~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKA-----------DAYPAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhh-----------hhCccccCcHHHHHHHH
Confidence 479999999986 59999999874 22322 222334444444333 45668999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
||||..+|+++|+|||||||||+...++.+-.......|.|.|+|||++.|.+. ||||+.|++|+|+++|+++++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999998876544455679999999999999987 9999999999999999999998664
Q ss_pred c
Q 039402 833 T 833 (1496)
Q Consensus 833 ~ 833 (1496)
.
T Consensus 228 ~ 228 (240)
T COG1126 228 K 228 (240)
T ss_pred C
Confidence 3
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=395.90 Aligned_cols=221 Identities=61% Similarity=1.001 Sum_probs=209.8
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
|.|+++|++++|+....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 56999999999975445699999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCE
Q 039402 1324 SIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKI 1403 (1496)
Q Consensus 1324 ~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~I 1403 (1496)
+++||+|.+|++|+++|++++...+++++.++++..++.+.+..+|.|+++...+.+.+||+|||||++||||++++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998777778899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecCh
Q 039402 1404 LMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNP 1464 (1496)
Q Consensus 1404 LiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p 1464 (1496)
|+|||||++||+.+.+.+.+.|++..++.|||+++|+++.+..||+|++|++|++++.|++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999988778999999999999999999999999999998864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=369.97 Aligned_cols=220 Identities=27% Similarity=0.449 Sum_probs=198.8
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCc-----cEEEECCeeCCC--CCh
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA-----GQILIDGIDISL--IGL 1316 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~-----G~I~IDG~dI~~--i~l 1316 (1496)
..++++||++-|.. ..+|+|||+.|++++.+|++|||||||||++++|-|+.+..+ |+|.+||.||-+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 46899999999974 359999999999999999999999999999999999999875 999999999976 578
Q ss_pred HHHhcccEEEcccccccccchhhccCCCC---C----CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1317 HDLRSRLSIIPQDPVMFEGTVRSNLDPLE---E----STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1317 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
-.||+++|+|.|.|.-|+.||+||+.... . .-|+-+.++|+++.|||.|... | .+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr---L----~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR---L----HKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH---h----hCCccCCChhHHH
Confidence 89999999999999999999999997431 1 2245578899999999998754 3 3456789999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
||||||||.-+|+||+||||||+|||.+...|.+.|.+..++-||++|||.+.-... +|+...+..|+++|+|..+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999889999999999988766 9999999999999999999999
Q ss_pred hcCC
Q 039402 1469 ENKS 1472 (1496)
Q Consensus 1469 ~~~~ 1472 (1496)
.++.
T Consensus 237 ~~P~ 240 (253)
T COG1117 237 TNPK 240 (253)
T ss_pred cCcc
Confidence 8764
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=371.96 Aligned_cols=217 Identities=28% Similarity=0.454 Sum_probs=195.0
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+|+||+++|.+ ..+++|+||+|++||.+.++|+|||||||+++++.|+++|++|+|+|||.||++++..+||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999984 459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eccccccccc-chhhccCCC---CCCc----HHHHHHHHHHcCCcH--HHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1326 IPQDPVMFEG-TVRSNLDPL---EEST----DEQIWEALDKCQLGD--EVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~--~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
|-|..-||+- ||.+|+..- ...+ ++++.|-|+.++|.. +....| ..|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 9999999976 999999632 2233 455677888999863 555555 457999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCC
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKS 1472 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~ 1472 (1496)
||..+|+||+||||.++||+-|+..+|+-+.+.-+ ++|+|+|||+++.... +|||.||++|+|+.+|+|+++++++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999998876543 7899999999987654 99999999999999999999999987
Q ss_pred cHH
Q 039402 1473 SSF 1475 (1496)
Q Consensus 1473 s~F 1475 (1496)
..|
T Consensus 229 n~F 231 (309)
T COG1125 229 NDF 231 (309)
T ss_pred HHH
Confidence 766
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=394.88 Aligned_cols=194 Identities=21% Similarity=0.307 Sum_probs=168.0
Q ss_pred CcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhc
Q 039402 1242 SHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321 (1496)
Q Consensus 1242 ~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~ 1321 (1496)
+...+++.+|+|.|.|+.++.++++++.++.-+|+++||.+|+||||+++++.+-.+|..|.+-+.+ |.
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 3457999999999999887899999999999999999999999999999999999999999998886 78
Q ss_pred ccEEEcccccccccchhhcc---C----CCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1322 RLSIIPQDPVMFEGTVRSNL---D----PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~gTIR~NL---d----p~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
||++-.|--+=| ..-|. | -++.-+++|+.+.|...|+...+...+ -..||||||-|+++|
T Consensus 428 ri~~f~Qhhvd~---l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA 494 (582)
T KOG0062|consen 428 RIKYFAQHHVDF---LDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFA 494 (582)
T ss_pred eecchhHhhhhH---HHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHH
Confidence 999999976643 22332 1 123348999999999998876554432 146899999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEe
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEF 1461 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~ 1461 (1496)
-....+|.+|||||||..||.++-..+-++|+.. +.-||+|+|+.+.|.. |+.++|.++|+|.-+
T Consensus 495 ~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 495 ACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred HHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEee
Confidence 9999999999999999999999999999999875 4479999999999987 999999999999873
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=388.44 Aligned_cols=231 Identities=33% Similarity=0.529 Sum_probs=212.2
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|+....++++|+||++++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999997543359999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEE
Q 039402 1326 IPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKIL 1404 (1496)
Q Consensus 1326 IpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~IL 1404 (1496)
+||+|.+|++|+++|+... ..++.+++.+.++.+++.+.+..+|.|+++.......+||+|||||++|||||+++|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999754 234566777888999999999999999999998889999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHH
Q 039402 1405 MLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQ 1477 (1496)
Q Consensus 1405 iLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~ 1477 (1496)
+|||||++||+.+...+.+.|++..++.|||+++|+++.+..||+|++|++|++++.|+++++.++ .+.|+.
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~ 232 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAK 232 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhh
Confidence 999999999999999999999988788999999999999989999999999999999999999865 455554
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=381.06 Aligned_cols=207 Identities=59% Similarity=0.990 Sum_probs=189.9
Q ss_pred CCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHH
Q 039402 1240 WPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL 1319 (1496)
Q Consensus 1240 wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L 1319 (1496)
||..+.++++|++++|+....++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..++
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999997543469999999999999999999999999999999999999999999999999998888889
Q ss_pred hcccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1320 RSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1320 R~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
|++++++||+|.+|++|+++|+..+..++++++.++++ +......||+|||||++||||+++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999998765556666666554 234567899999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecCh
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNP 1464 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p 1464 (1496)
+|+||||||||++||+++.+.+.+.|++..+++|+|+++|+++.+..||+|++|++|++++.|+|
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999998778999999999999988999999999999998875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=384.89 Aligned_cols=226 Identities=39% Similarity=0.612 Sum_probs=210.0
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
|.|+++|++++|... .++++|+||+|++||++||+|++|||||||+++|.|+++|.+|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 469999999999643 3599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcccccccccchhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 039402 1324 SIIPQDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402 (1496)
Q Consensus 1324 ~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ 1402 (1496)
+|+||+|.+|++|+++|+.... ...++++.++++.+++.+.+..+|.|+++.++....+||+|||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999997543 345678888999999999999999999999998999999999999999999999999
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhc
Q 039402 1403 ILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1403 ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
+|+|||||++||+.+.+.+.+.|++..+++|||+|+|+++.+..||+|++|++|++++.|++++++++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999987678999999999999988999999999999999999888754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=385.09 Aligned_cols=233 Identities=36% Similarity=0.592 Sum_probs=214.5
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|+.+ ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.+++..+...+|+.+++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5789999999643 359999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEE
Q 039402 1326 IPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKIL 1404 (1496)
Q Consensus 1326 IpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~IL 1404 (1496)
+||+|.+|++|+++|+... ...+++++.++++.+++.+.+..+|.|+++.+.....+||+|||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999743 345677888999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHH
Q 039402 1405 MLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVA 1480 (1496)
Q Consensus 1405 iLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~ 1480 (1496)
||||||++||+++...+.+.|++..++.|||+++|+++.+..||++++|++|++++.|+++++.++ .+.|+.++.
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~ 234 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWK 234 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHh
Confidence 999999999999999999999987668899999999999999999999999999999999999864 566766554
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=383.60 Aligned_cols=233 Identities=34% Similarity=0.616 Sum_probs=211.4
Q ss_pred EEEEeEEeEeCCC-CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1246 IDLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~-~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 5789999999653 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCE
Q 039402 1325 IIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKI 1403 (1496)
Q Consensus 1325 iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~I 1403 (1496)
++||+|.+|+.|+++|+... .....+++.+.++.+++.+.+..+|.|+++.......+||+|||||++||||++++|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999753 33456678888999999999999999999999888999999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHH
Q 039402 1404 LMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLV 1479 (1496)
Q Consensus 1404 LiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~ 1479 (1496)
|||||||++||+.+.+.+.+.|++..+++|||+++|+++.+..||+|++|++|++++.|+++++.+. .+..++++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 235 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLV 235 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHHh
Confidence 9999999999999999999999987678999999999999989999999999999999999999864 44444443
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=400.62 Aligned_cols=223 Identities=27% Similarity=0.453 Sum_probs=194.2
Q ss_pred EEEEeEEeEeCCC--CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH---Hh
Q 039402 1246 IDLLDLQVRYAPQ--MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---LR 1320 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~--~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR 1320 (1496)
|+++||+++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cccEEEcccccccc-cchhhccC-CC--CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1321 SRLSIIPQDPVMFE-GTVRSNLD-PL--EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1321 ~~i~iIpQdp~LF~-gTIR~NLd-p~--~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
++|++|||++.+|. .|+++|+. |. ...+ ++++.++|+.+++.+.....| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999995 69999996 22 1222 345778899999887655443 468999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
|||||+.+|+||+||||||+||+.|...|.+.|++..+ +.|||+|||+++.+.. ||+|++|++|+|+|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998754 7899999999999976 99999999999999999999987
Q ss_pred cCCcHH-HHHH
Q 039402 1470 NKSSSF-SQLV 1479 (1496)
Q Consensus 1470 ~~~s~F-~~l~ 1479 (1496)
++...+ +.++
T Consensus 231 ~p~~~~~~~~~ 241 (343)
T TIGR02314 231 HPKTPLAQKFI 241 (343)
T ss_pred CCCcHHHHHHH
Confidence 765444 3444
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=377.12 Aligned_cols=219 Identities=36% Similarity=0.551 Sum_probs=201.6
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
|.|+++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999965334699999999999999999999999999999999999999999999999999888877888999
Q ss_pred EEEcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 039402 1324 SIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402 (1496)
Q Consensus 1324 ~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ 1402 (1496)
+++||+|.+|..|+++|+... ...+++++.++++..++.+.+...|.|+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999989999999753 2345667888999999999999999999999998899999999999999999999999
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEec
Q 039402 1403 ILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1403 ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g 1462 (1496)
+|||||||++||+++...+.+.|++..+++|||+++|+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999876668999999999988779999999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=379.98 Aligned_cols=211 Identities=33% Similarity=0.526 Sum_probs=186.6
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc-----CCCccEEEECCeeCCCCC--hHH
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV-----EPAAGQILIDGIDISLIG--LHD 1318 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~-----ep~~G~I~IDG~dI~~i~--l~~ 1318 (1496)
|+++||+++|+.. ++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.+||.++...+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 5789999999643 5999999999999999999999999999999999999 999999999999998876 667
Q ss_pred HhcccEEEcccccccccchhhccCCCC---C-C----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 039402 1319 LRSRLSIIPQDPVMFEGTVRSNLDPLE---E-S----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1390 (1496)
Q Consensus 1319 LR~~i~iIpQdp~LF~gTIR~NLdp~~---~-~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQl 1390 (1496)
+|++++++||+|.+|..|+++|+.... . . .++++.++++.+++.+...+.++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 889999999999999889999996421 1 1 23567888999988766544321 46799999999
Q ss_pred HHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhH
Q 039402 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1391 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
++||||++++|++|+|||||++||+++.+.+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|+|+++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999988666899999999999875 999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=361.59 Aligned_cols=225 Identities=29% Similarity=0.437 Sum_probs=190.5
Q ss_pred eEEEEeEEeEeCCCC--CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC-hHHHhc
Q 039402 1245 KIDLLDLQVRYAPQM--PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG-LHDLRS 1321 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~--~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~-l~~LR~ 1321 (1496)
.++++|+++.|+... -++|+||||+|.+||.+||||+||||||||.++|.|+.+|++|+|.+||.+..... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999997543 25999999999999999999999999999999999999999999999997765543 346788
Q ss_pred ccEEEcccccc-c--ccchhhccC-CCCC----CcHHHHHHHHHHcCCcHHHH-hccCCcccccccCCCCCCchHHHHHH
Q 039402 1322 RLSIIPQDPVM-F--EGTVRSNLD-PLEE----STDEQIWEALDKCQLGDEVR-KKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1322 ~i~iIpQdp~L-F--~gTIR~NLd-p~~~----~sd~eI~~aL~~~~L~~~i~-~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
.+.+|+|||.- + .-||++-|. |... -..++++++|+.+||.+... ..| ..||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 89999999962 2 236776664 4332 23456999999999976553 444 357999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCc--EEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDC--TVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~--TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
|||||.-+|++||+|||||+||.-..+.|.+.+.+.-+++ |.|+|+|++..+.. ||||+||++|+++|.++-+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999998877655 99999999999988 99999999999999999999998
Q ss_pred cCCcHHHHHHH
Q 039402 1470 NKSSSFSQLVA 1480 (1496)
Q Consensus 1470 ~~~s~F~~l~~ 1480 (1496)
.+...|.+..-
T Consensus 232 ~~~h~ytr~Ll 242 (252)
T COG1124 232 HPSHPYTRELL 242 (252)
T ss_pred CCccHHHHHHH
Confidence 75555554443
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=383.49 Aligned_cols=222 Identities=26% Similarity=0.359 Sum_probs=199.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC-------------ee
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TK 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g-------------~~ 683 (1496)
.++++|+++.|+.+ ..++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++| .+
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 48899999999632 4579999999999999999999999999999999999998 799999998 26
Q ss_pred EEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 039402 684 AYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDI 763 (1496)
Q Consensus 684 ~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 763 (1496)
+||||+|++|++|++||+....+.+++++.++++.+++.+.+..+|.+++|.+++.|.+||||||||++||||++.+|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999964444667788889999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHHHHH
Q 039402 764 YLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGA 841 (1496)
Q Consensus 764 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~ 841 (1496)
+||||||++||+.+.+.+.+ .+....+++|+|+|||+++.+..||+|++|++|++++.|++++++++...|.+++..
T Consensus 160 lllDEpts~LD~~~~~~l~~-~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRK-TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred EEEECccccCCHHHHHHHHH-HHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 99999999999999887754 555555689999999999998889999999999999999999999876666666543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=394.96 Aligned_cols=218 Identities=25% Similarity=0.357 Sum_probs=185.5
Q ss_pred cceEEEEeEEeEeCCCC---CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC-----
Q 039402 1243 HGKIDLLDLQVRYAPQM---PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI----- 1314 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~---~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----- 1314 (1496)
...|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 34699999999997432 3599999999999999999999999999999999999999999999999998753
Q ss_pred -----------ChHHHhcccEEEcccc--cccccchhhccCCCC---CCcHHH----HHHHHHHcCCcHHHHhccCCccc
Q 039402 1315 -----------GLHDLRSRLSIIPQDP--VMFEGTVRSNLDPLE---ESTDEQ----IWEALDKCQLGDEVRKKEGKLDS 1374 (1496)
Q Consensus 1315 -----------~l~~LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sd~e----I~~aL~~~~L~~~i~~lp~gLdt 1374 (1496)
....+|++++++||+| .+|++|+++|+.... ..++++ +.++++.+++.+ .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~ 168 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------S 168 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------h
Confidence 3567899999999998 699999999996321 223333 334455555431 2
Q ss_pred ccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhc-ccCEEEE
Q 039402 1375 KVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVI-DSDLVLL 1452 (1496)
Q Consensus 1375 ~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~-~~DrIlV 1452 (1496)
.....+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+. .||+|+|
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 2455677899999999999999999999999999999999999999999998753 4789999999999885 5999999
Q ss_pred EeCCeEeEecChhhHhhc
Q 039402 1453 LNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1453 L~~G~IvE~g~p~~Ll~~ 1470 (1496)
|++|++++.|+|++++++
T Consensus 249 l~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 249 MDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EECCEEEEeCCHHHHhcC
Confidence 999999999999998754
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=366.68 Aligned_cols=190 Identities=37% Similarity=0.467 Sum_probs=163.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------eEEEcc
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAYVAQ 688 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------~~yv~Q 688 (1496)
.+.+++++.+|.. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|+ ++||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 4788999999963 68999999999999999999999999999999999999999999999884 599999
Q ss_pred CCccCCC-cHHHHhccCCCCC-------HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 689 SPWIQSG-KIEDNILFGKEMN-------RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 689 ~~~i~~~-ti~eNI~~g~~~~-------~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
++-++.- ||+|||.||.+.. +++..+.++.++|...- +..+.+|||||||||+|||||..+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~-----------~~~P~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFE-----------DKYPHQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchh-----------hcCccccChHHHHHHHHHHHHhcC
Confidence 9887764 9999999987642 23455566666665443 355689999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCcccc-CCEEEEEeC--CeEE
Q 039402 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPA-ADLILVMKD--GKIT 820 (1496)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~--G~i~ 820 (1496)
|+|+||||||+|||+.|+.++.+++.+... .++||++||||+++.-. +|||++|.+ |+|.
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999777666554 37999999999988654 999999998 4453
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=356.16 Aligned_cols=223 Identities=28% Similarity=0.480 Sum_probs=196.9
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH---HHh
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH---DLR 1320 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR 1320 (1496)
-.|++++|+++|... .||+||+|+|++||..||+|+||||||||++++.|+..|++|+|.|+|.||.+++-+ .+|
T Consensus 7 ~~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 469999999999654 599999999999999999999999999999999999999999999999999999854 569
Q ss_pred cccEEEccccccccc-chhhccC-CCCCC---cHHHHH----HHHHHcCCcHHH-HhccCCcccccccCCCCCCchHHHH
Q 039402 1321 SRLSIIPQDPVMFEG-TVRSNLD-PLEES---TDEQIW----EALDKCQLGDEV-RKKEGKLDSKVTENGENWSMGQRQL 1390 (1496)
Q Consensus 1321 ~~i~iIpQdp~LF~g-TIR~NLd-p~~~~---sd~eI~----~aL~~~~L~~~i-~~lp~gLdt~v~e~G~nLS~GQrQl 1390 (1496)
+++|++.|.--||+. ||+||+. |..+| +++++. .-|+.+||...+ ...| +.||||.|.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 999999999999987 9999997 55554 444443 458888888773 3444 4689999999
Q ss_pred HHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhH
Q 039402 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1391 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
++||||+.-+|+||++|||||++||.+...|-+.|++.. -+.|+|+|||+++++.. ||||+++.+|+|+-.|+|++|
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999888754 37899999999999987 899999999999999999999
Q ss_pred hhcCCcHHHHHH
Q 039402 1468 LENKSSSFSQLV 1479 (1496)
Q Consensus 1468 l~~~~s~F~~l~ 1479 (1496)
.+.++-..++.+
T Consensus 234 ~~sd~P~v~qf~ 245 (263)
T COG1127 234 LASDDPWVRQFF 245 (263)
T ss_pred HhCCCHHHHHHh
Confidence 988776655544
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=372.25 Aligned_cols=213 Identities=32% Similarity=0.503 Sum_probs=188.8
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.++++|++++|.. .++|+|+||+|++||.++|+||||||||||+++|.|+..|.+|+|++||.||.+++..++-++++
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 4789999999973 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccc-ccccchhhccC----C----CCCCc--HH-HHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1325 IIPQDPV-MFEGTVRSNLD----P----LEEST--DE-QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1325 iIpQdp~-LF~gTIR~NLd----p----~~~~s--d~-eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
|+||++. -|.-||+|-+. | +...+ |+ .+.+||+.+++.++..+. + ..||||||||++
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~---~--------~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP---V--------DELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc---c--------cccChhHHHHHH
Confidence 9999975 45559988774 3 22222 33 477889999998775432 2 458999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-cccCEEEEEeCCeEeEecChhhHhh
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSV-IDSDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti-~~~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
|||||.++|+||+|||||++||....-.|.+.+++.. ++.|||+|.|+++.. +.||++++|++|+|+..|+|++.+.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999876 369999999999775 5699999999999999999999986
Q ss_pred c
Q 039402 1470 N 1470 (1496)
Q Consensus 1470 ~ 1470 (1496)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 4
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=378.11 Aligned_cols=219 Identities=24% Similarity=0.424 Sum_probs=194.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC---CCccEEEECCeeCCCCChHHHhc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE---PAAGQILIDGIDISLIGLHDLRS 1321 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e---p~~G~I~IDG~dI~~i~l~~LR~ 1321 (1496)
.|+++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.|+...+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999964 469999999999999999999999999999999999985 68999999999999888888899
Q ss_pred ccEEEcccccccccchhhccCCCC---------CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1322 RLSIIPQDPVMFEGTVRSNLDPLE---------ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~gTIR~NLdp~~---------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
+++|+||+|.+|..|+++|+.... ...++++.++++.+++.+.+..+ ..+.+.+||+|||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHHH
Confidence 999999999999999999996421 11234578889999987655432 33456789999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcC
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~ 1471 (1496)
||||++++|++|+|||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999999987778999999999998865 9999999999999999999998654
Q ss_pred C
Q 039402 1472 S 1472 (1496)
Q Consensus 1472 ~ 1472 (1496)
.
T Consensus 233 ~ 233 (246)
T PRK14269 233 K 233 (246)
T ss_pred C
Confidence 3
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=371.38 Aligned_cols=215 Identities=30% Similarity=0.475 Sum_probs=195.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCC-CCChHHHhccc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS-LIGLHDLRSRL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~-~i~l~~LR~~i 1323 (1496)
.|+++|++++|.++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.+++ ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58999999999887 77999999999999999999999999999999999999999999999999999 48899999999
Q ss_pred EEEcccc--cccccchhhccCCCC---CCcH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1324 SIIPQDP--VMFEGTVRSNLDPLE---ESTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1324 ~iIpQdp--~LF~gTIR~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
|+|.|+| .+|..||.+.+.... ..+. +.+.++|+.+++.+.....| .+||||||||++||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 799999999997432 2333 34778899999987744443 57899999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCC--cEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcC
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSD--CTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~--~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~ 1471 (1496)
.+|..+|+|||||||||+||+...+.+.+.+++..++ .|+|+|+|+++.+.+ |||++||++|+++.+|+|++++++.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 9999999999999999999999999999999987644 699999999999998 9999999999999999999999764
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=358.37 Aligned_cols=203 Identities=29% Similarity=0.416 Sum_probs=173.3
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~ 684 (1496)
|+++|+++.|. ++.+++|+||+|++||+++++|||||||||+|++|.++++|++|+|.++|. +|
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 68999999996 578999999999999999999999999999999999999999999999994 59
Q ss_pred EEccCCccCC-CcHHHHhccCCC---CCHHHHH----HHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH
Q 039402 685 YVAQSPWIQS-GKIEDNILFGKE---MNRERYN----AVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 756 (1496)
Q Consensus 685 yv~Q~~~i~~-~ti~eNI~~g~~---~~~~~~~----~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 756 (1496)
||-|+.-+|. .||.|||..-.. +++++.+ +.++..+|++ .....+.+.+|||||+|||.+|||
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p---------~~~~~RyP~eLSGGQQQRVGv~RA 149 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDP---------SEYADRYPHELSGGQQQRVGVARA 149 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCH---------HHHhhcCchhcCcchhhHHHHHHH
Confidence 9999999874 699999987542 4555443 3444444432 112356789999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCcc-ccCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 757 LYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
|..+|+|+|+||||+||||-++..+-++..+... -++|+|+||||+++. +.+|||.+|++|+|++.+++++++.+.
T Consensus 150 LAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 150 LAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 9999999999999999999999998666554333 389999999999885 569999999999999999999998764
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=409.10 Aligned_cols=199 Identities=27% Similarity=0.338 Sum_probs=166.5
Q ss_pred CCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC--CCccEEEECCeeCCCCChHHHhcccEEEcccc-cccc
Q 039402 1258 QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE--PAAGQILIDGIDISLIGLHDLRSRLSIIPQDP-VMFE 1334 (1496)
Q Consensus 1258 ~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e--p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~ 1334 (1496)
+....|+|||=-++||--+|++|.||||||||++.|.+-.. ..+|+|+|||.+..+ +..++++|||-|++ ++=+
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 44568999999999999999999999999999999998764 357999999998765 77999999999977 5656
Q ss_pred cchhhccCC------CCCCcHHH----HHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC-CE
Q 039402 1335 GTVRSNLDP------LEESTDEQ----IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS-KI 1403 (1496)
Q Consensus 1335 gTIR~NLdp------~~~~sd~e----I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~-~I 1403 (1496)
-||||-|.. -.+.+++| +.++.+-.+|.+. =|..||.-|+-||..||.||.||--|+.|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 699999842 13445544 4455555555433 356688888999999999999999999999 89
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchh--cccCEEEEEeC-CeEeEecChhh
Q 039402 1404 LMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSV--IDSDLVLLLNH-GLIEEFDNPAN 1466 (1496)
Q Consensus 1404 LiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti--~~~DrIlVL~~-G~IvE~g~p~~ 1466 (1496)
|.||||||+||+++...|.+++|+.. .|+||++.-|.++.. ..+|+++.|++ |+.|-+|++-+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999865 689999999999874 45999999986 69998887644
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=377.09 Aligned_cols=212 Identities=28% Similarity=0.431 Sum_probs=186.0
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCCh---HHHhcc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL---HDLRSR 1322 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l---~~LR~~ 1322 (1496)
|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999964 359999999999999999999999999999999999999999999999999987764 567889
Q ss_pred cEEEccccccccc-chhhccCCC----CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH
Q 039402 1323 LSIIPQDPVMFEG-TVRSNLDPL----EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1393 (1496)
Q Consensus 1323 i~iIpQdp~LF~g-TIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~L 1393 (1496)
++++||+|.+|.+ |+++|+... ...+ ++++.++++.+++.+...+.+ .+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP-----------AELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHH
Confidence 9999999999986 999999632 1122 234677888888865543332 4689999999999
Q ss_pred HHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1394 GRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1394 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999999998653 7899999999999876 999999999999999999998754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=373.95 Aligned_cols=221 Identities=30% Similarity=0.511 Sum_probs=193.7
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.++++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.|+...+..++|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcccccccccchhhccCCCC---CCcHHHHHHHHHHcCCc-HHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccC
Q 039402 1325 IIPQDPVMFEGTVRSNLDPLE---ESTDEQIWEALDKCQLG-DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1400 (1496)
Q Consensus 1325 iIpQdp~LF~gTIR~NLdp~~---~~sd~eI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~ 1400 (1496)
++||+|.+|+.|+++|+.... ...++++.+.++..++. +... ....+||+|||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYAT-----------RDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhh-----------CCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999997422 22345677888888875 2222 23467999999999999999999
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCcHHHH
Q 039402 1401 SKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFSQ 1477 (1496)
Q Consensus 1401 ~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~ 1477 (1496)
|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+|++++.++...+.+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 99999999999999999999999999864 37899999999999876 9999999999999999999998765444544
Q ss_pred H
Q 039402 1478 L 1478 (1496)
Q Consensus 1478 l 1478 (1496)
.
T Consensus 230 ~ 230 (241)
T PRK14250 230 L 230 (241)
T ss_pred H
Confidence 3
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=366.49 Aligned_cols=209 Identities=31% Similarity=0.447 Sum_probs=183.5
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++|++++|... + ||+||||+|++||.+||+||||||||||+++++|++.|++|+|.++|.+++.... +.+||
T Consensus 4 ~i~v~nl~v~y~~~-~-vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR-P-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE-e-eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 59999999999865 4 9999999999999999999999999999999999999999999999988765433 67999
Q ss_pred EEcccc---cccccchhhccCCCC-----------CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 039402 1325 IIPQDP---VMFEGTVRSNLDPLE-----------ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1390 (1496)
Q Consensus 1325 iIpQdp---~LF~gTIR~NLdp~~-----------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQl 1390 (1496)
||||.. .-|+-||+|-+.... ..+.+++.+||+++++.++..+ ++ ..|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i----~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QI----GELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------cc----cccCcHHHHH
Confidence 999955 358889999886421 1134789999999999877543 23 3589999999
Q ss_pred HHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS-DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1391 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~-~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
+.|||||+.+|++|+|||||++||+.++..|.+.|++..+ +|||++|+|+++.+++ ||+|+.|+ +++.-.|+|++.+
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 9999999999999999999999999999999999998764 8999999999999987 99999995 5678899999998
Q ss_pred hc
Q 039402 1469 EN 1470 (1496)
Q Consensus 1469 ~~ 1470 (1496)
+.
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 64
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=372.36 Aligned_cols=217 Identities=35% Similarity=0.534 Sum_probs=198.1
Q ss_pred CcceEEEEeEEeEeCCC-CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHh
Q 039402 1242 SHGKIDLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1320 (1496)
Q Consensus 1242 ~~g~I~f~nvs~~Y~~~-~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR 1320 (1496)
..|.++++|++++|+.. ..++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35789999999999643 23699999999999999999999999999999999999999999999999999888878888
Q ss_pred cccEEEcccccccccchhhccCC-CCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1321 SRLSIIPQDPVMFEGTVRSNLDP-LEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1321 ~~i~iIpQdp~LF~gTIR~NLdp-~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
++++++||+|.+|++|+++|++. ......+++++..++.++.+.+..++.|+++.+.+...+||+|||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999984 33334556777777788889999998899988899999999999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeE
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLI 1458 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~I 1458 (1496)
+|++|||||||++||+++.+.+.+.|++..+++|+|+|+|+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999987777999999999999988999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=367.16 Aligned_cols=207 Identities=25% Similarity=0.342 Sum_probs=173.8
Q ss_pred EEEEeeEEEecCC--CCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 618 LDIVDGNFSWDIS--SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~--~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
|+++++++.|... ...++|+||||+|++||+.+|+|.||+|||||+++|.++-.|++|+|.++|.
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999742 1246899999999999999999999999999999999999999999999993
Q ss_pred ---eEEEccCCccCC-CcHHHHhccCCC---CC-HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHH
Q 039402 683 ---KAYVAQSPWIQS-GKIEDNILFGKE---MN-RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754 (1496)
Q Consensus 683 ---~~yv~Q~~~i~~-~ti~eNI~~g~~---~~-~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 754 (1496)
+|+++|++.+++ .||.|||.|..+ .. ++..++|.+.+.+ . |.....+..+.+|||||||||+||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLel------V--gL~dk~~~yP~qLSGGQKQRVaIA 153 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLEL------V--GLSDKADRYPAQLSGGQKQRVAIA 153 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHH------c--CChhhhccCchhcCcchhhHHHHH
Confidence 699999999987 799999999754 22 2333444443322 1 111223577899999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 039402 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
|||..+|+|||.|||||||||+|.+.|.+.+..-- .-|-|+++|||.++.++. |||+.||++|+++++|+..++..+.
T Consensus 154 RALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P 233 (339)
T COG1135 154 RALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233 (339)
T ss_pred HHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence 99999999999999999999999999986443222 348999999999999987 9999999999999999999987654
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=382.86 Aligned_cols=215 Identities=28% Similarity=0.422 Sum_probs=191.3
Q ss_pred eEEEEeEEeEeCCC-CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1245 KIDLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~-~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
.|+++||+++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999643 34599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcccc--cccccchhhccCCCC---CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1324 SIIPQDP--VMFEGTVRSNLDPLE---EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1324 ~iIpQdp--~LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
+++||+| .++..||++||.... ..+ ++++.++++.+++.+.....| .+||+|||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 356779999997321 122 345788999999876655443 57899999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhc
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
|||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++++.|+++++.++
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998653 7899999999999988999999999999999999998764
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=380.28 Aligned_cols=216 Identities=25% Similarity=0.455 Sum_probs=196.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+.+|.+.. +|+|+|++|+.||.+.++||||||||||+++|.||.+|++|+|.|||.|++++++.+ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 699999999997653 999999999999999999999999999999999999999999999999999998877 6899
Q ss_pred EEccccccccc-chhhccCC-CC------CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVMFEG-TVRSNLDP-LE------ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp-~~------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
+|+|+..||+. ||++||.. .. +--++++.++++..++.+.+..+|. .||||||||++||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHH
Confidence 99999999987 99999973 22 1235678899999999999888885 569999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCc
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s 1473 (1496)
|.++|++++||||.|+||......+...|++..+ +.|+|.|||+....+. +|||.||++|+|.+.|+|.++.+++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999999998888887543 5799999999988776 999999999999999999999999887
Q ss_pred HH
Q 039402 1474 SF 1475 (1496)
Q Consensus 1474 ~F 1475 (1496)
.|
T Consensus 228 ~f 229 (338)
T COG3839 228 LF 229 (338)
T ss_pred hh
Confidence 76
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=375.56 Aligned_cols=221 Identities=29% Similarity=0.457 Sum_probs=192.6
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCeeCCC--CC
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISL--IG 1315 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~ 1315 (1496)
.+.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 467999999999964 359999999999999999999999999999999999986 589999999999864 45
Q ss_pred hHHHhcccEEEcccccccccchhhccCCC----CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1316 LHDLRSRLSIIPQDPVMFEGTVRSNLDPL----EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1316 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
...+|++++++||+|.+|..|+++|+... ...+ +++++++++.+++.+.+.. ...+...+||+||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-------KLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-------HHhcCCCCCCHHH
Confidence 66789999999999999999999999632 1122 3567888999888654332 2334567899999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhh
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~ 1466 (1496)
|||++||||++++|+||||||||++||+.+.+.+.+.|++..++.|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988677899999999999865 99999999999999999999
Q ss_pred HhhcCC
Q 039402 1467 LLENKS 1472 (1496)
Q Consensus 1467 Ll~~~~ 1472 (1496)
+++.+.
T Consensus 242 ~~~~~~ 247 (260)
T PRK10744 242 IFTKPA 247 (260)
T ss_pred HHhCCC
Confidence 986543
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=340.40 Aligned_cols=207 Identities=27% Similarity=0.397 Sum_probs=187.1
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH---Hhcc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---LRSR 1322 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR~~ 1322 (1496)
|+|+||+.+|+.+ +++|+||||+|++||.+=++|+||||||||+++|++...|++|+|.++|.|++++.-++ ||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999877 78999999999999999999999999999999999999999999999999999987554 8999
Q ss_pred cEEEccccccccc-chhhccC-CCC--CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1323 LSIIPQDPVMFEG-TVRSNLD-PLE--EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1323 i~iIpQdp~LF~g-TIR~NLd-p~~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
||+|.||--|... |+.||+. |.. ..+ .+++.++|+.++|.+....+|. .|||||+||+|||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHHH
Confidence 9999999987755 9999997 332 222 3457889999999999999985 5699999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecCh
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNP 1464 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p 1464 (1496)
||+..+|++|+=||||-|||+++...|.+.+.+.- .|.||++.||+.+.+.+ --|++.+++|+++..+.+
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999998754 58999999999999988 467999999999987654
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=361.93 Aligned_cols=200 Identities=32% Similarity=0.525 Sum_probs=171.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC----------eeEE
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----------TKAY 685 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g----------~~~y 685 (1496)
..|+++|++++|+. . ++|+||||++++|++++|+||||||||||+++|+|.++|.+|+|.+.| ++||
T Consensus 3 ~~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 35899999999963 2 699999999999999999999999999999999999999999999876 4899
Q ss_pred EccCC---ccCCCcHHHHhccCCCC-----------CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 686 VAQSP---WIQSGKIEDNILFGKEM-----------NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 686 v~Q~~---~i~~~ti~eNI~~g~~~-----------~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
|||.. |-|..||+|-+.+|... |.++.+++++..++.+ + ..++..+|||||+|||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~-~----------~~r~i~~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED-L----------RDRQIGELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchh-h----------hCCcccccCcHHHHHH
Confidence 99965 66888999999998432 2356667777776652 2 2466788999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHH
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLI 829 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~ 829 (1496)
.|||||.++||+|+|||||+|+|+.++..+++ ++..+ .+|+||++||||++.+.. +|+|+.|+ +++...|++++..
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~-lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYD-LLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 99999999999999999999999999998875 45544 459999999999998765 99999996 4688899999886
Q ss_pred hc
Q 039402 830 NS 831 (1496)
Q Consensus 830 ~~ 831 (1496)
+.
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 53
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=363.36 Aligned_cols=199 Identities=25% Similarity=0.412 Sum_probs=183.3
Q ss_pred EEEEeEEeEeCCCC---CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1246 IDLLDLQVRYAPQM---PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~---~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
|+++||+++|.+.. +++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997642 4699999999999999999999999999999999999999999999999 6
Q ss_pred cEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 039402 1323 LSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402 (1496)
Q Consensus 1323 i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ 1402 (1496)
|+|+||+|.+|++|+++|+......++++.+++++.+++.+.+...|.|+++.+.+.+.+||+|||||++||||++++|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998765566778889999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCHHHHHHHHH-HHHHhcC-CcEEEEEccCcchhcccCEEEEEeCCe
Q 039402 1403 ILMLDEATASVDTATDNLIQQ-TLRQHFS-DCTVLTIAHRITSVIDSDLVLLLNHGL 1457 (1496)
Q Consensus 1403 ILiLDEaTsslD~~Td~~Iq~-~I~~~f~-~~TVI~IAHRl~ti~~~DrIlVL~~G~ 1457 (1496)
+++|||||++||+++.+.+.+ .+++..+ +.|||+++|+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999877766 5665543 689999999999999999999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=390.16 Aligned_cols=220 Identities=26% Similarity=0.426 Sum_probs=190.7
Q ss_pred EEEEeEEeEeCC--CCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH---Hh
Q 039402 1246 IDLLDLQVRYAP--QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---LR 1320 (1496)
Q Consensus 1246 I~f~nvs~~Y~~--~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR 1320 (1496)
|+++||+++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cccEEEcccccccc-cchhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1321 SRLSIIPQDPVMFE-GTVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1321 ~~i~iIpQdp~LF~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
++|+++||+|.+|. .|+++|+... ...+ ++++.++++..++.+...+. ..+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRY-----------PAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999986 6999999632 1222 24567788888876654433 3578999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
|||||+++|+||+|||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999999987
Q ss_pred cCCcHHH
Q 039402 1470 NKSSSFS 1476 (1496)
Q Consensus 1470 ~~~s~F~ 1476 (1496)
++...+.
T Consensus 231 ~~~~~~~ 237 (343)
T PRK11153 231 HPKHPLT 237 (343)
T ss_pred CCCcHHH
Confidence 6544443
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=374.12 Aligned_cols=219 Identities=25% Similarity=0.416 Sum_probs=190.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCeeCCC--CChH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISL--IGLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1317 (1496)
.|+++||+++|.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. ....
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999964 359999999999999999999999999999999999975 589999999999875 3456
Q ss_pred HHhcccEEEcccccccccchhhccCCC----CC----CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1318 DLRSRLSIIPQDPVMFEGTVRSNLDPL----EE----STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
.+|++++|+||+|.+|.+|+++|+... +. ..++++.++++.+++.+.+.. .......+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHHH
Confidence 788999999999999999999999631 11 124567888999988765432 223446789999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
|++||||++++|+||+|||||++||+.+.+.+.+.|++..+++|||+++|+++.+.. ||+|++|++|+|++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999865 9999999999999999999998
Q ss_pred hcCC
Q 039402 1469 ENKS 1472 (1496)
Q Consensus 1469 ~~~~ 1472 (1496)
+++.
T Consensus 237 ~~~~ 240 (253)
T PRK14242 237 TRPR 240 (253)
T ss_pred cCCC
Confidence 6544
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=373.97 Aligned_cols=222 Identities=25% Similarity=0.394 Sum_probs=191.9
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCeeCCC--CChH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISL--IGLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l~ 1317 (1496)
.|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. ....
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 6999999999964 3599999999999999999999999999999999999997 48999999999864 3455
Q ss_pred HHhcccEEEcccccccccchhhccCCC----CCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1318 DLRSRLSIIPQDPVMFEGTVRSNLDPL----EES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
.+|++++|+||+|.+|..|+++|+... ... .++++.++++.+++.+.+. +.+|+ ...+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~----~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---DKLNT----NALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---HHHhC----CcccCCHHHHH
Confidence 688999999999999999999999632 111 2456778888888865432 23443 45789999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|||+|+|+++.+.+ ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998667999999999999866 9999999999999999999998
Q ss_pred hcCCcHH
Q 039402 1469 ENKSSSF 1475 (1496)
Q Consensus 1469 ~~~~s~F 1475 (1496)
+++.-.|
T Consensus 238 ~~~~~~~ 244 (254)
T PRK14273 238 FNPKNTK 244 (254)
T ss_pred hCCCChH
Confidence 7654433
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=368.44 Aligned_cols=210 Identities=23% Similarity=0.356 Sum_probs=183.6
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++||+++|+....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.... .++|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5789999999653246999999999999999999999999999999999999999999999999987643 667889999
Q ss_pred Eccccccc-ccchhhccCCCC---CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1326 IPQDPVMF-EGTVRSNLDPLE---EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1326 IpQdp~LF-~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+||+|.+| ..|+++|+.... ..+ ++++.++++..++.+..... ..+||+|||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKR-----------ARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhCh-----------hhhCCHHHHHHHHHHHHH
Confidence 99999998 579999986311 112 34577888888876543322 257999999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhH
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
+++|++|+|||||++||+.+.+.+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999988777999999999999976 999999999999999998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=380.98 Aligned_cols=215 Identities=28% Similarity=0.478 Sum_probs=186.7
Q ss_pred eEEEEeEEeEeCCCC---CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC--hHHH
Q 039402 1245 KIDLLDLQVRYAPQM---PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG--LHDL 1319 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~---~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~--l~~L 1319 (1496)
.|+++||+++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 389999999997532 36999999999999999999999999999999999999999999999999998754 4578
Q ss_pred hcccEEEcccc--cccccchhhccCCCC---CCcH----HHHHHHHHHcCCc--HHHHhccCCcccccccCCCCCCchHH
Q 039402 1320 RSRLSIIPQDP--VMFEGTVRSNLDPLE---ESTD----EQIWEALDKCQLG--DEVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1320 R~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sd----~eI~~aL~~~~L~--~~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
|++++|+||+| .+|+.|+++|+.... ..++ +++.++++.+++. +. .......||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~~LSgGq~ 150 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDY-----------KDKSPFELSGGQK 150 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhh-----------ccCCcccCCHHHH
Confidence 89999999998 578899999996321 2233 3467888888875 22 2233467999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChh
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPA 1465 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~ 1465 (1496)
||++|||||+.+|+||||||||++||+.+...+.+.|++..+ +.|||+|+|+++.+.. ||||++|++|++++.|+++
T Consensus 151 qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 151 RRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998753 6899999999999864 9999999999999999999
Q ss_pred hHhhc
Q 039402 1466 NLLEN 1470 (1496)
Q Consensus 1466 ~Ll~~ 1470 (1496)
+++++
T Consensus 231 ~~~~~ 235 (287)
T PRK13637 231 EVFKE 235 (287)
T ss_pred HHHhC
Confidence 98753
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=387.74 Aligned_cols=217 Identities=24% Similarity=0.407 Sum_probs=191.8
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++|++++|+.+ ..+|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.++..++.+ +++|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999433 4599999999999999999999999999999999999999999999999999887754 47899
Q ss_pred EEccccccccc-chhhccCCC-C--CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPL-E--EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~-~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
+|||++.+|.. |+++|+... . ..+ ++++.++++.+++.+...+.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 999999732 1 122 245778899999987766655 4689999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCc
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s 1473 (1496)
|+++|+||+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999988654 6899999999998865 999999999999999999999988765
Q ss_pred HH
Q 039402 1474 SF 1475 (1496)
Q Consensus 1474 ~F 1475 (1496)
.|
T Consensus 229 ~~ 230 (356)
T PRK11650 229 TF 230 (356)
T ss_pred HH
Confidence 55
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=347.22 Aligned_cols=207 Identities=28% Similarity=0.436 Sum_probs=179.3
Q ss_pred CccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------
Q 039402 615 ETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1496)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------ 682 (1496)
...|++++++++|. ++.+++|+||+|++||+++|+|||||||||||++|.|+++|++|+|.++|.
T Consensus 6 ~~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 35799999999995 578999999999999999999999999999999999999999999999984
Q ss_pred ----eEEEccCCccCCC-cHHHHhccCC----CCCHHHHHH----HHHHhchhhH-HHhccCCCcccccCCCCCCChHHH
Q 039402 683 ----KAYVAQSPWIQSG-KIEDNILFGK----EMNRERYNA----VLDACSLKKD-LEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 ----~~yv~Q~~~i~~~-ti~eNI~~g~----~~~~~~~~~----v~~~~~l~~d-~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
+|+++|+--+|+. ||+||+.|.. ...++.+++ -++.++|..+ .+.+| .+||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHH
Confidence 5999999999976 9999999963 344444443 3567777766 44444 78999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecCh
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS--SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKY 825 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~ 825 (1496)
+|++||||+..||+|+++|||||+|||.++..+ ++++..+.+ +-|+|+||||++.+.. ||+++++.||+|+..|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 999999999999999999999999999986654 677776544 8999999999998765 999999999999999999
Q ss_pred HHHHhcCcchH
Q 039402 826 NDLINSGTDFM 836 (1496)
Q Consensus 826 ~~l~~~~~~~~ 836 (1496)
+|+.+++..+-
T Consensus 231 ~el~~sd~P~v 241 (263)
T COG1127 231 EELLASDDPWV 241 (263)
T ss_pred HHHHhCCCHHH
Confidence 99988765443
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=363.61 Aligned_cols=201 Identities=30% Similarity=0.456 Sum_probs=173.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC-------------ee
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TK 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g-------------~~ 683 (1496)
.++++|++|+|+ ++++++|+||++++||+++|+|||||||||||++|+|.++|.+|+|.++| .+
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 478999999996 57899999999999999999999999999999999999999999999999 46
Q ss_pred EEEccCCcc-CCCcHHHHhccCCC-C----------CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 684 AYVAQSPWI-QSGKIEDNILFGKE-M----------NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 684 ~yv~Q~~~i-~~~ti~eNI~~g~~-~----------~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
|||||++.. +.-||+|-+.+|+. + |++...++++.+++.+.. .+...+|||||||||
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la-----------~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA-----------DRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh-----------cCcccccChhHHHHH
Confidence 999999755 56699999999952 1 223345556776665432 355678999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcc-ccCCEEEEEeCCeEEEecChHHHH
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDLI 829 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~G~~~~l~ 829 (1496)
.|||||+++|+|+|||||||+||....-++++.+.+.. .+|+|+|+|+||++.. .+||++++|++|+++.+|+++|++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999987554443 3589999999999986 569999999999999999999887
Q ss_pred hc
Q 039402 830 NS 831 (1496)
Q Consensus 830 ~~ 831 (1496)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 54
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=377.55 Aligned_cols=215 Identities=29% Similarity=0.423 Sum_probs=192.2
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+++|+...+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+..+++++|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999654456999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcccc--cccccchhhccCCCC---CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1325 IIPQDP--VMFEGTVRSNLDPLE---EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1325 iIpQdp--~LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
|+||+| .+++.|+++||.... ..+ ++++.++++.++|.+.+...| ..||+|||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 567789999996421 122 245778889889887766555 368999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhc
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
||+++|+||||||||++||+.+...+.+.|++..+ ++|||+++|+++.+..||+|++|++|++++.|+++++.+.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998764 7899999999999989999999999999999999998753
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=373.82 Aligned_cols=223 Identities=24% Similarity=0.479 Sum_probs=191.8
Q ss_pred CCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCeeCCC--
Q 039402 1241 PSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISL-- 1313 (1496)
Q Consensus 1241 p~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~-- 1313 (1496)
|....|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++..
T Consensus 9 ~~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 9 SKNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred CCCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 33457999999999964 359999999999999999999999999999999999987 689999999999863
Q ss_pred CChHHHhcccEEEcccccccccchhhccCCCC---CC---cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1314 IGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE---ES---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1314 i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~---sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
.+..++|++++++||+|.+|.+|+++|+.... .+ .++++.++++.+++.+.+. ........+||+||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 159 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQ 159 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHH
Confidence 56678899999999999999999999997432 11 2455777888887754332 22334457899999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeC-----------
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNH----------- 1455 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~----------- 1455 (1496)
|||++|||||+++|++|+|||||++||+.+...+.+.|++..+++|||+++|+++.+.+ ||+|++|++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 99999999999999999999999999999999999999988667899999999999876 999999996
Q ss_pred CeEeEecChhhHhhcCC
Q 039402 1456 GLIEEFDNPANLLENKS 1472 (1496)
Q Consensus 1456 G~IvE~g~p~~Ll~~~~ 1472 (1496)
|+++|.|+++++++++.
T Consensus 240 g~~~~~~~~~~~~~~~~ 256 (269)
T PRK14259 240 GYLVEFNETKKIFNSPK 256 (269)
T ss_pred ceEEEeCCHHHHHhCcC
Confidence 67999999999987543
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=370.68 Aligned_cols=221 Identities=27% Similarity=0.456 Sum_probs=191.2
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-----ccEEEECCeeCCCC--ChHH
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA-----AGQILIDGIDISLI--GLHD 1318 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~-----~G~I~IDG~dI~~i--~l~~ 1318 (1496)
|+++||+++|+.. .+++|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... ....
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999743 5999999999999999999999999999999999999998 99999999999763 4566
Q ss_pred HhcccEEEcccccccccchhhccCCC---CC-Cc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 039402 1319 LRSRLSIIPQDPVMFEGTVRSNLDPL---EE-ST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1390 (1496)
Q Consensus 1319 LR~~i~iIpQdp~LF~gTIR~NLdp~---~~-~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQl 1390 (1496)
.|++++|+||+|.+|..|+++|+... .. .+ ++++.++++..++.+.+.. .......+||+|||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD-------RLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh-------HhhCCcccCCHHHHHH
Confidence 78899999999999999999999631 11 11 3457788999998744421 1223446899999999
Q ss_pred HHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1391 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++++
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999999876 99999999999999999999987
Q ss_pred cCCcHH
Q 039402 1470 NKSSSF 1475 (1496)
Q Consensus 1470 ~~~s~F 1475 (1496)
++...+
T Consensus 233 ~~~~~~ 238 (247)
T TIGR00972 233 NPKEKR 238 (247)
T ss_pred CCCChH
Confidence 655544
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=377.54 Aligned_cols=212 Identities=27% Similarity=0.399 Sum_probs=188.5
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999643 45999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEcccc--cccccchhhccCCCC---CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1325 IIPQDP--VMFEGTVRSNLDPLE---EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1325 iIpQdp--~LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
|+||+| .+|..|+++|+.... ..+ ++++.++++.+++.+...+.| ..||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 688899999997321 122 356788899999876655544 368999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
||+++|++|||||||++||+.+...+.+.|++.. +++|||+++|+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999998864 47899999999999865 9999999999999999997653
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=371.14 Aligned_cols=218 Identities=24% Similarity=0.352 Sum_probs=194.7
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
.+.|+++|++++ + .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+|| +
T Consensus 37 ~~~l~i~nls~~---~-~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLV---G-APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEe---c-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 457999999985 2 3599999999999999999999999999999999999999999999998 4
Q ss_pred cEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 039402 1323 LSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402 (1496)
Q Consensus 1323 i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ 1402 (1496)
++|+||++.+|++|+++|+.....+.+.++.++++.+++.+.+..+|.++++.+.+.+.+||+|||||++|||||+++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998543445556778889899999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCHHHHHHHHHH-HHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHH
Q 039402 1403 ILMLDEATASVDTATDNLIQQT-LRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQL 1478 (1496)
Q Consensus 1403 ILiLDEaTsslD~~Td~~Iq~~-I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l 1478 (1496)
||||||||++||+++...+.+. +++..+++|||+|+|+++.+..||+|++|++|+++++|+++++.+. .+.|.+-
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 255 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSSK 255 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHHH
Confidence 9999999999999999888765 4555567999999999999989999999999999999999999854 3344433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=386.03 Aligned_cols=217 Identities=24% Similarity=0.433 Sum_probs=192.2
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
..|+++|++++|.. ..+|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.++...+. .++++
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 46999999999964 458999999999999999999999999999999999999999999999999987664 35789
Q ss_pred EEEccccccccc-chhhccCC-CC--CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDP-LE--EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp-~~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
++++|++.+|.. |+++|+.. .. ..+ ++++.++++..++.+...+.| ..||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 99999973 21 122 356788899999876654443 468999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCC
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKS 1472 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~ 1472 (1496)
||+++|+||+||||||+||+.+.+.+++.|++..+ ++|+|+|||+.+.+.. ||+|+||++|+|++.|+|+++.+++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998754 7899999999999866 99999999999999999999998877
Q ss_pred cHH
Q 039402 1473 SSF 1475 (1496)
Q Consensus 1473 s~F 1475 (1496)
..|
T Consensus 230 ~~~ 232 (351)
T PRK11432 230 SRF 232 (351)
T ss_pred chH
Confidence 655
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=372.77 Aligned_cols=219 Identities=29% Similarity=0.426 Sum_probs=189.5
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCeeCC--CCChH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDIS--LIGLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~--~i~l~ 1317 (1496)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999964 3599999999999999999999999999999999999987 4999999999997 45566
Q ss_pred HHhcccEEEccccccccc-chhhccCCC---CC------CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1318 DLRSRLSIIPQDPVMFEG-TVRSNLDPL---EE------STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~g-TIR~NLdp~---~~------~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
.+|++++++||+|.+|.+ |+++|+... .. ..++++.++++..++.+.+.. .......+||+||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHHH
Confidence 788999999999999976 999999631 11 112457788888887644322 1234457899999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhh
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~ 1466 (1496)
|||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987677999999999999876 99999999999999999999
Q ss_pred HhhcCC
Q 039402 1467 LLENKS 1472 (1496)
Q Consensus 1467 Ll~~~~ 1472 (1496)
+++++.
T Consensus 235 ~~~~~~ 240 (253)
T PRK14267 235 VFENPE 240 (253)
T ss_pred HHhCCC
Confidence 986543
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=368.72 Aligned_cols=213 Identities=26% Similarity=0.408 Sum_probs=184.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 3789999999964 459999999999999999999999999999999999999999999999999876553 367899
Q ss_pred EEcccccccc-cchhhccCCCC---CC----c----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1325 IIPQDPVMFE-GTVRSNLDPLE---ES----T----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1325 iIpQdp~LF~-gTIR~NLdp~~---~~----s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
|+||+|.+|. .|+++|+.... .. + ++++.++++..++.+...+. ..+||+|||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 9999999986 59999997421 11 1 23466778888876544333 3578999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
|||||+++|++|+|||||++||+++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998643 6899999999998765 99999999999999999999986
Q ss_pred cCC
Q 039402 1470 NKS 1472 (1496)
Q Consensus 1470 ~~~ 1472 (1496)
++.
T Consensus 227 ~~~ 229 (239)
T cd03296 227 HPA 229 (239)
T ss_pred CCC
Confidence 543
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=370.86 Aligned_cols=211 Identities=29% Similarity=0.443 Sum_probs=184.1
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC---hHHHhcc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LHDLRSR 1322 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~LR~~ 1322 (1496)
++++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 45999999999999999999999999999999999999999999999999998876 4568889
Q ss_pred cEEEcccccccc-cchhhccCCC------------C---CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch
Q 039402 1323 LSIIPQDPVMFE-GTVRSNLDPL------------E---ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1386 (1496)
Q Consensus 1323 i~iIpQdp~LF~-gTIR~NLdp~------------~---~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~G 1386 (1496)
++++||++.+|. .|+++|+... + ...++++.++++..++.+.. ...+.+||+|
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-----------YQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----------CCCcccCCHH
Confidence 999999998887 6999999521 1 11234567778888775433 2245679999
Q ss_pred HHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecC
Q 039402 1387 QRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDN 1463 (1496)
Q Consensus 1387 QrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~ 1463 (1496)
||||++||||++++|+||||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.+ ||+|++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999865 37899999999999984 99999999999999999
Q ss_pred hhhHh
Q 039402 1464 PANLL 1468 (1496)
Q Consensus 1464 p~~Ll 1468 (1496)
++++.
T Consensus 229 ~~~~~ 233 (241)
T cd03256 229 PAELT 233 (241)
T ss_pred HHHhh
Confidence 99974
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=373.12 Aligned_cols=222 Identities=23% Similarity=0.411 Sum_probs=192.4
Q ss_pred CcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCeeCCC--C
Q 039402 1242 SHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISL--I 1314 (1496)
Q Consensus 1242 ~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i 1314 (1496)
+.+.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|++||.++.. .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 4568999999999964 3599999999999999999999999999999999999975 89999999999875 3
Q ss_pred ChHHHhcccEEEcccccccccchhhccCCC---CCC------cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCc
Q 039402 1315 GLHDLRSRLSIIPQDPVMFEGTVRSNLDPL---EES------TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1385 (1496)
Q Consensus 1315 ~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~------sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~ 1385 (1496)
+...+|++++++||+|.+|.+|+++|+... ... .++++.++++.+++.+.+.. .....+.+||+
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCH
Confidence 456788999999999999999999999631 111 13457888999988654432 12344578999
Q ss_pred hHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecCh
Q 039402 1386 GQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNP 1464 (1496)
Q Consensus 1386 GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p 1464 (1496)
|||||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987667899999999999965 899999999999999999
Q ss_pred hhHhhcCC
Q 039402 1465 ANLLENKS 1472 (1496)
Q Consensus 1465 ~~Ll~~~~ 1472 (1496)
++++.++.
T Consensus 247 ~~~~~~~~ 254 (267)
T PRK14235 247 EKMFTNPD 254 (267)
T ss_pred HHHHhCCC
Confidence 99986543
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=365.58 Aligned_cols=202 Identities=25% Similarity=0.371 Sum_probs=177.0
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH---HHhcc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH---DLRSR 1322 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR~~ 1322 (1496)
|+++|++++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999965434699999999999999999999999999999999999999999999999999876543 47889
Q ss_pred cEEEcccccccc-cchhhccCCC----C---CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1323 LSIIPQDPVMFE-GTVRSNLDPL----E---ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1323 i~iIpQdp~LF~-gTIR~NLdp~----~---~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
++++||+|.+|. .|+++|+... + +..++++.++++.+++.+.....| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999887 4999999631 1 113456888999999876655443 46899999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeE
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLI 1458 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~I 1458 (1496)
|||+++|+||+|||||++||+++.+.+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|+|
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998764 37899999999999976 999999999985
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=370.41 Aligned_cols=223 Identities=30% Similarity=0.475 Sum_probs=192.5
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCeeCCCCChHHH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISLIGLHDL 1319 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i~l~~L 1319 (1496)
.|+++||+++|.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999964 3599999999999999999999999999999999999974 69999999999998888889
Q ss_pred hcccEEEccccccc-ccchhhccCCC---CC---C---cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1320 RSRLSIIPQDPVMF-EGTVRSNLDPL---EE---S---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1320 R~~i~iIpQdp~LF-~gTIR~NLdp~---~~---~---sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
|++++++||+|.+| +.|+++|+... .. . .++++.++++.+++.+.+.. .+|. ...+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~----~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLDA----PAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhcC----CcccCCHHHHH
Confidence 99999999999755 67999999631 11 1 13567889999988654321 2333 34679999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
|++||||++++|+||+|||||++||+.+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999987678999999999999865 9999999999999999999998
Q ss_pred hcCCcHHH
Q 039402 1469 ENKSSSFS 1476 (1496)
Q Consensus 1469 ~~~~s~F~ 1476 (1496)
+++...+.
T Consensus 234 ~~~~~~~~ 241 (250)
T PRK14247 234 TNPRHELT 241 (250)
T ss_pred cCCccHHH
Confidence 76544343
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=387.57 Aligned_cols=205 Identities=28% Similarity=0.398 Sum_probs=182.2
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHH----hcccEEEccccccccc
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL----RSRLSIIPQDPVMFEG 1335 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L----R~~i~iIpQdp~LF~g 1335 (1496)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|+|||.|+...+..++ |++++|+||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 458999999999999999999999999999999999999999999999999999998887 7899999999999975
Q ss_pred -chhhccCCC---CCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEE
Q 039402 1336 -TVRSNLDPL---EES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLD 1407 (1496)
Q Consensus 1336 -TIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLD 1407 (1496)
||++|+... ... .++++.++|+.++|.++..+.| .+||||||||++|||||+++|+||+||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999631 112 2356788899998876655544 478999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCcHH
Q 039402 1408 EATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSF 1475 (1496)
Q Consensus 1408 EaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F 1475 (1496)
||||+||+.+.+.+++.+++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+|+++++++...|
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 9999999999999999998764 37899999999998755 99999999999999999999998765444
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=369.47 Aligned_cols=212 Identities=27% Similarity=0.432 Sum_probs=182.9
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHH-hcccE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-RSRLS 1324 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i~ 1324 (1496)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |.+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999964 359999999999999999999999999999999999999999999999999988876664 57899
Q ss_pred EEccccccccc-chhhccCCCC----CC-------------cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPLE----ES-------------TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1386 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~~----~~-------------sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~G 1386 (1496)
++||+|.+|.+ |+++|+.... .. .++++.++++..++.+. .......||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG 147 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL-----------ADRPAGELSYG 147 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccch-----------hhCChhhCCHH
Confidence 99999999987 9999985321 10 12235566666665432 23344679999
Q ss_pred HHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecCh
Q 039402 1387 QRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNP 1464 (1496)
Q Consensus 1387 QrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p 1464 (1496)
||||++||||++++|++|+|||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|++
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCH
Confidence 9999999999999999999999999999999999999998865 57899999999999976 999999999999999999
Q ss_pred hhHhhc
Q 039402 1465 ANLLEN 1470 (1496)
Q Consensus 1465 ~~Ll~~ 1470 (1496)
++++++
T Consensus 228 ~~~~~~ 233 (236)
T cd03219 228 DEVRNN 233 (236)
T ss_pred HHhccC
Confidence 998754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=369.47 Aligned_cols=215 Identities=25% Similarity=0.392 Sum_probs=188.0
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
++++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..++|++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 459999999999999999999999999999999999999999999999999998888888999999
Q ss_pred Ecccccccc-cchhhccCCC---CCCc----HHHHHHHHHHcCCcH--HHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1326 IPQDPVMFE-GTVRSNLDPL---EEST----DEQIWEALDKCQLGD--EVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1326 IpQdp~LF~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~--~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
+||+|.+|. .|+++|+... ...+ ++++.+++++.++.+ .. .....+||+|||||++|||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-----------~~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFA-----------DRYPHELSGGQQQRVGVAR 148 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHH-----------hcChhhCCHHHHHHHHHHH
Confidence 999999996 6999999632 1112 345677888887763 22 2334679999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCC
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKS 1472 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~ 1472 (1496)
|++++|++|+|||||++||+.+.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 228 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPA 228 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCC
Confidence 99999999999999999999999999999998653 7999999999998765 99999999999999999999976543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=369.31 Aligned_cols=467 Identities=19% Similarity=0.172 Sum_probs=338.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCch------hHHHHHhhhHHHHHhhh
Q 039402 966 TLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSG------RIINRASTDQSAADLGI 1039 (1496)
Q Consensus 966 ~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~G------rIlnR~s~D~~~vd~~l 1039 (1496)
..+.+|..++.+...+...+.++......+.-.-+-+.++++-+..- .||...-.| ..=+|...|+...-..-
T Consensus 87 ~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 87 QQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhH
Confidence 34678888888888888888888888888888888888888887766 555444333 33468888887776655
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---------------hHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039402 1040 PSLVGAYAFSIIRILGTIAVMSQV---------------AWQVFIV----FVPAVGSCIWYQQYYISSARELSRLVGVCK 1100 (1496)
Q Consensus 1040 ~~~~~~~~~~~~~~l~~~~~~~~~---------------~~~~~~~----~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~ 1100 (1496)
-.....++.+++++++..+++... ...++.+ ++...++..++.+...+-.-+-.++|+.-|
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 555666666666666555554411 1111111 111222334666777777777777777777
Q ss_pred chHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCC
Q 039402 1101 APVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAF-TLVFLISIPKGFID 1179 (1496)
Q Consensus 1101 sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~-~~~~~~~~~~g~~~ 1179 (1496)
+.+.. .-+....|-.|+-|+...++..+..+.-...+......+.++...-...+-+.+.+ ..+..-....|.++
T Consensus 246 ~~Lvr----v~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~ 321 (604)
T COG4178 246 YSLVR----VRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQIT 321 (604)
T ss_pred HHHHH----HHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcCh
Confidence 65443 34566778888888776666655555544444443333333333222222221111 11111123478889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhc------CCCCCCCCccCCCCCCCCCCcceEEEEeEEe
Q 039402 1180 PAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTC------IPSEPPLAIEESRPNDSWPSHGKIDLLDLQV 1253 (1496)
Q Consensus 1180 ~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~------~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~ 1253 (1496)
-|.+..+.+-..++...+.|++..+..+..-.....|+.++.+ .+.+.+.... .+-...-.....|.|+|+++
T Consensus 322 ~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l 400 (604)
T COG4178 322 FGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSL 400 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeE
Confidence 8888888888889999999999999999999999999999863 2222211100 00000000146899999999
Q ss_pred EeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEccccccc
Q 039402 1254 RYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMF 1333 (1496)
Q Consensus 1254 ~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF 1333 (1496)
.-+++. ..|++++|+++|||.+-|.|+||||||||+++|.|+.+-.+|+|.+-. -+++-++||.|.+-
T Consensus 401 ~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p 468 (604)
T COG4178 401 RTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLP 468 (604)
T ss_pred ECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCC
Confidence 987665 689999999999999999999999999999999999999999987751 24689999999999
Q ss_pred ccchhhccC-CCC--CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCC
Q 039402 1334 EGTVRSNLD-PLE--ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEAT 1410 (1496)
Q Consensus 1334 ~gTIR~NLd-p~~--~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaT 1410 (1496)
.||+|+-|. |.. +++|+|+.++|.+|+|.+.+.++.+--+ =..-||+||||||++||.+|++|++++|||||
T Consensus 469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEAT 543 (604)
T COG4178 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543 (604)
T ss_pred CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecch
Confidence 999999997 443 3899999999999999999988743221 23569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeC
Q 039402 1411 ASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNH 1455 (1496)
Q Consensus 1411 sslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~ 1455 (1496)
|+||++++..+.+.++++.+++|||.|+||.....-.++.+-+++
T Consensus 544 sALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 544 SALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred hccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 999999999999999999999999999999888777777666654
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=367.97 Aligned_cols=214 Identities=30% Similarity=0.443 Sum_probs=186.5
Q ss_pred EEEEeEEeEeCCCC--CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH---Hh
Q 039402 1246 IDLLDLQVRYAPQM--PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---LR 1320 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~--~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR 1320 (1496)
|+++|++++|+... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+..+ .|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 26999999999999999999999999999999999999999999999999998776543 57
Q ss_pred cccEEEcccccccc-cchhhccCCC---CCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1321 SRLSIIPQDPVMFE-GTVRSNLDPL---EES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1321 ~~i~iIpQdp~LF~-gTIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
++++++||+|.+|. .|+++|+... ... .++++.++++..++.+...+. ..+||+|||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAY-----------PAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 89999999999997 5999998631 111 234678888888886554433 2578999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
||||++++|++|||||||++||+.+...+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999998653 7899999999999876 99999999999999999999875
Q ss_pred c
Q 039402 1470 N 1470 (1496)
Q Consensus 1470 ~ 1470 (1496)
+
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 4
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=346.82 Aligned_cols=212 Identities=26% Similarity=0.403 Sum_probs=190.9
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC---hHHHhc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LHDLRS 1321 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~LR~ 1321 (1496)
.|+++||+.+|+. ...+|+||||+|++||.|+|+|+||||||||+++|.|+.+|++|+|.++|.++.... ++++|.
T Consensus 3 ~i~~~nl~k~yp~-~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPG-GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCC-CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 5899999999974 456999999999999999999999999999999999999999999999999999987 778899
Q ss_pred ccEEEccccccccc-chhhccCC------------CCCCcH---HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCc
Q 039402 1322 RLSIIPQDPVMFEG-TVRSNLDP------------LEESTD---EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1385 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~g-TIR~NLdp------------~~~~sd---~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~ 1385 (1496)
++|+|.|+|-|-+. |+-+|+.- |+-++. ....+||+++++.|..-.. .++|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr-----------a~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR-----------ASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH-----------hccCCc
Confidence 99999999998865 99999741 233443 4578899999998876554 357899
Q ss_pred hHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEec
Q 039402 1386 GQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1386 GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g 1462 (1496)
||+||++|||||..+|+|++=|||||+||+.+.+.|++.|++.. .+.|||+.-|.++..+. ||||+-|++|+|+-.|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999999865 46899999999999976 9999999999999999
Q ss_pred ChhhHh
Q 039402 1463 NPANLL 1468 (1496)
Q Consensus 1463 ~p~~Ll 1468 (1496)
++.+|-
T Consensus 231 ~~~el~ 236 (258)
T COG3638 231 PASELT 236 (258)
T ss_pred Chhhhh
Confidence 999964
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=351.99 Aligned_cols=178 Identities=34% Similarity=0.564 Sum_probs=167.0
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|+...+++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999975434699999999999999999999999999999999999999999999999998776 6678899999
Q ss_pred EcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEE
Q 039402 1326 IPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILM 1405 (1496)
Q Consensus 1326 IpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILi 1405 (1496)
+||+|.+|++|+++|+ ..+||+|||||++||||++++|++|+
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 46799999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEec
Q 039402 1406 LDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1406 LDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g 1462 (1496)
|||||++||+.+.+.+.+.|++..+++|+|+++|+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999887789999999999999889999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=385.58 Aligned_cols=217 Identities=26% Similarity=0.418 Sum_probs=191.8
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++|++++|.. ..+|+|+||+|++||++||+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ +++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 5899999999964 3589999999999999999999999999999999999999999999999999877654 67899
Q ss_pred EEcccccccc-cchhhccCC-CC--CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVMFE-GTVRSNLDP-LE--EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~LF~-gTIR~NLdp-~~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
++||++.+|. .|+++|+.. .. ..+ ++++.++++..++.+.....| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 599999963 21 122 356778888888876655444 5789999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCc
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s 1473 (1496)
|+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+++.+.. ||+|+||++|+++++|+|+++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999988654 6899999999999866 999999999999999999999988776
Q ss_pred HHH
Q 039402 1474 SFS 1476 (1496)
Q Consensus 1474 ~F~ 1476 (1496)
.|.
T Consensus 229 ~~~ 231 (353)
T TIGR03265 229 PFV 231 (353)
T ss_pred HHH
Confidence 663
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=376.72 Aligned_cols=216 Identities=24% Similarity=0.385 Sum_probs=184.3
Q ss_pred eEEEEeEEeEeCCCC---CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC----ChH
Q 039402 1245 KIDLLDLQVRYAPQM---PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI----GLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~---~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~ 1317 (1496)
.|+++||+++|++.. +++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 3699999999999999999999999999999999999999999999999999754 346
Q ss_pred HHhcccEEEcccc--cccccchhhccCCC--C-CCcH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 039402 1318 DLRSRLSIIPQDP--VMFEGTVRSNLDPL--E-ESTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp--~LF~gTIR~NLdp~--~-~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
.+|++|+|+||+| .+|+.|+++|+... . ..+. +++.++++.+++... .......+||+|||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHH
Confidence 7899999999998 68889999999632 1 2232 334556666665411 12234568999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhc-ccCEEEEEeCCeEeEecChh
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVI-DSDLVLLLNHGLIEEFDNPA 1465 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~-~~DrIlVL~~G~IvE~g~p~ 1465 (1496)
||++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|+|+++.+. .||||++|++|++++.|+|+
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999864 4799999999999986 49999999999999999999
Q ss_pred hHhhc
Q 039402 1466 NLLEN 1470 (1496)
Q Consensus 1466 ~Ll~~ 1470 (1496)
+++++
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 98864
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=371.44 Aligned_cols=220 Identities=26% Similarity=0.457 Sum_probs=192.0
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCeeCCC--CCh
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISL--IGL 1316 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l 1316 (1496)
..|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 36999999999953 469999999999999999999999999999999999997 589999999999864 346
Q ss_pred HHHhcccEEEcccccccccchhhccCCC----CCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 039402 1317 HDLRSRLSIIPQDPVMFEGTVRSNLDPL----EES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1317 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
..+|++++++||+|.+|.+|+++|+... +.. .++++.++++.+++.+.+.. ........||+|||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHHHH
Confidence 6789999999999999999999999631 111 23557788999988655432 23455678999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhH
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
||++||||++++|++|+|||||++||+.+...+.+.|++..++.|||+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred hhcCC
Q 039402 1468 LENKS 1472 (1496)
Q Consensus 1468 l~~~~ 1472 (1496)
.+.+.
T Consensus 250 ~~~~~ 254 (267)
T PRK14237 250 FTNPK 254 (267)
T ss_pred hcCCC
Confidence 86543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=350.95 Aligned_cols=204 Identities=30% Similarity=0.435 Sum_probs=177.5
Q ss_pred EEEEeEEeEeCCCC--CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH---HH-
Q 039402 1246 IDLLDLQVRYAPQM--PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH---DL- 1319 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~--~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~L- 1319 (1496)
++++||+..|..+. ..+|+|+||+|++||.|+|+||||||||||++.|-++-.|++|+|.++|.|+..++-+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67899999996543 3699999999999999999999999999999999999999999999999999999843 34
Q ss_pred hcccEEEccccccccc-chhhccC-C--CCCC----cHHHHHHHHHHcCCcHHHH-hccCCcccccccCCCCCCchHHHH
Q 039402 1320 RSRLSIIPQDPVMFEG-TVRSNLD-P--LEES----TDEQIWEALDKCQLGDEVR-KKEGKLDSKVTENGENWSMGQRQL 1390 (1496)
Q Consensus 1320 R~~i~iIpQdp~LF~g-TIR~NLd-p--~~~~----sd~eI~~aL~~~~L~~~i~-~lp~gLdt~v~e~G~nLS~GQrQl 1390 (1496)
|++||+|+|+..|++. |++||+. | +... .++.+.+.++..++.+... +.| ..||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 5679999999998876 9999997 2 2222 2445667778888876655 444 4689999999
Q ss_pred HHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcccCEEEEEeCCeEeE
Q 039402 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVIDSDLVLLLNHGLIEE 1460 (1496)
Q Consensus 1391 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE 1460 (1496)
++|||||+.+|+|++.||||++||.+|.+.|.+.+++.. .++|+|+|||+......|||++.|.+|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999875 3689999999999999999999999999543
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=371.66 Aligned_cols=222 Identities=24% Similarity=0.426 Sum_probs=191.1
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCeeCCCCC--hH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISLIG--LH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~i~--l~ 1317 (1496)
.-+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++...+ ..
T Consensus 5 ~~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 5 HASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 3578999999963 469999999999999999999999999999999999986 47999999999987653 34
Q ss_pred HHhcccEEEcccccccccchhhccCCC---CC------CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 039402 1318 DLRSRLSIIPQDPVMFEGTVRSNLDPL---EE------STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~------~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
.+|++++|+||+|.+|.+|+++|+... .. ..++++.++++..++.+.+. +.+...+.+||+|||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 678999999999999999999999631 11 12356778889988865432 122344678999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhH
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
||++||||++++|+||+|||||++||+.+.+.+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999876 999999999999999999999
Q ss_pred hhcCCcHH
Q 039402 1468 LENKSSSF 1475 (1496)
Q Consensus 1468 l~~~~s~F 1475 (1496)
++++...+
T Consensus 236 ~~~~~~~~ 243 (251)
T PRK14244 236 FKNPQSSK 243 (251)
T ss_pred hcCCCChH
Confidence 97765544
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=342.79 Aligned_cols=206 Identities=29% Similarity=0.433 Sum_probs=178.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCc-----cEEEEcCe--------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS-----GTLKLCGT-------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~-----G~i~~~g~-------- 682 (1496)
..++++|+++.|. ++.+|+|||++|++++++|++||+||||||||+++.+..+..+ |+|.++|+
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 4689999999996 5789999999999999999999999999999999999887765 99999884
Q ss_pred -------eEEEccCCccCCCcHHHHhccCCCC---C----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 -------KAYVAQSPWIQSGKIEDNILFGKEM---N----RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 -------~~yv~Q~~~i~~~ti~eNI~~g~~~---~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
+|+|+|.|.-|..||+|||.+|... . ++..++.++.++|-+..+ ..+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK-------DrL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK-------DRLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH-------HHhhCCccCCChhHH
Confidence 4999999999999999999999542 1 233445555555544332 124577889999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 827 (1496)
||++|||||.-+|+|+|||||||||||.+..+| ++++..+.++-|+|+|||+++...+ +|+...+.+|++++.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 999999999999999999999999999998888 7788888889999999999998776 99999999999999999999
Q ss_pred HHhcC
Q 039402 828 LINSG 832 (1496)
Q Consensus 828 l~~~~ 832 (1496)
+..+.
T Consensus 235 iF~~P 239 (253)
T COG1117 235 IFTNP 239 (253)
T ss_pred hhcCc
Confidence 87653
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=370.12 Aligned_cols=222 Identities=27% Similarity=0.418 Sum_probs=189.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCeeCCC--CChH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISL--IGLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1317 (1496)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999964 359999999999999999999999999999999999997 479999999999864 3455
Q ss_pred HHhcccEEEcccccccccchhhccCCCC---CC-----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1318 DLRSRLSIIPQDPVMFEGTVRSNLDPLE---ES-----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~-----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
.+|+.++++||+|.+|++|+++|+.... .. .++++.++++.+++++... ..+ .....+||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~----~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK---DNL----DRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH---HHh----ccChhhCCHHHHH
Confidence 6788999999999999999999997421 11 2345677788888753211 122 2345789999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
|++||||++++|++|||||||++||+++...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988777899999999999876 9999999999999999999998
Q ss_pred hcCCcHH
Q 039402 1469 ENKSSSF 1475 (1496)
Q Consensus 1469 ~~~~s~F 1475 (1496)
..+.-.|
T Consensus 235 ~~~~~~~ 241 (251)
T PRK14251 235 IAPKKQI 241 (251)
T ss_pred hCCCCHH
Confidence 6554334
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=369.23 Aligned_cols=220 Identities=25% Similarity=0.427 Sum_probs=189.8
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc---cCC--CccEEEECCeeCCCC--ChH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI---VEP--AAGQILIDGIDISLI--GLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl---~ep--~~G~I~IDG~dI~~i--~l~ 1317 (1496)
.|+++|++++|++ ..+|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5899999999964 3599999999999999999999999999999999997 344 589999999999764 346
Q ss_pred HHhcccEEEcccccccccchhhccCC-CC--C-----CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1318 DLRSRLSIIPQDPVMFEGTVRSNLDP-LE--E-----STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~gTIR~NLdp-~~--~-----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
.+|++++|+||+|.+|.+|+++|+.. .. . ..++++.++++.+++.+.+.. .....+.+||+||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-------hhhCCcccCCHHHHH
Confidence 77889999999999999999999963 11 1 123467888888888654432 123456789999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
|++||||++++|+||||||||++||+.+.+.+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|++++++
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999998778999999999999865 9999999999999999999998
Q ss_pred hcCCc
Q 039402 1469 ENKSS 1473 (1496)
Q Consensus 1469 ~~~~s 1473 (1496)
+++..
T Consensus 234 ~~~~~ 238 (250)
T PRK14245 234 TNPEK 238 (250)
T ss_pred cCCCC
Confidence 76543
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=368.67 Aligned_cols=211 Identities=29% Similarity=0.424 Sum_probs=183.2
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCCh---HHHhcc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL---HDLRSR 1322 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l---~~LR~~ 1322 (1496)
|+++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ..+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999633 459999999999999999999999999999999999999999999999999987654 457889
Q ss_pred cEEEcccccccc-cchhhccCCCC---------------CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch
Q 039402 1323 LSIIPQDPVMFE-GTVRSNLDPLE---------------ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1386 (1496)
Q Consensus 1323 i~iIpQdp~LF~-gTIR~NLdp~~---------------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~G 1386 (1496)
++++||++.+|. .|+++|+.... ...++++.++++.+++.+... ....+||+|
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHH
Confidence 999999999886 59999995210 112345777888887754432 234679999
Q ss_pred HHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecC
Q 039402 1387 QRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDN 1463 (1496)
Q Consensus 1387 QrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~ 1463 (1496)
||||++|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|+|+++.+.+ ||+|++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999998643 7899999999999865 99999999999999999
Q ss_pred hhhHh
Q 039402 1464 PANLL 1468 (1496)
Q Consensus 1464 p~~Ll 1468 (1496)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 99874
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=373.45 Aligned_cols=216 Identities=26% Similarity=0.423 Sum_probs=191.8
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCc---cEEEECCeeCCCCChHHHh
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA---GQILIDGIDISLIGLHDLR 1320 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~---G~I~IDG~dI~~i~l~~LR 1320 (1496)
+.|+++|++++|++...++|+|+||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999996543459999999999999999999999999999999999999988 8999999999888877889
Q ss_pred cccEEEcccc--cccccchhhccCCC---CCCcH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 039402 1321 SRLSIIPQDP--VMFEGTVRSNLDPL---EESTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1391 (1496)
Q Consensus 1321 ~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll 1391 (1496)
++++|+||+| .+++.|+++||... ...++ +++.++++.+++.+.....| .+||+|||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999998 46788999999732 12333 34778899999877655544 57899999999
Q ss_pred HHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhh
Q 039402 1392 CLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1392 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
+|||||+++|++|||||||++||+.+...+.+.|++..+ ++|||+++|+++.+..||+|++|++|++++.|+++++++
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999998753 689999999999998899999999999999999999875
Q ss_pred c
Q 039402 1470 N 1470 (1496)
Q Consensus 1470 ~ 1470 (1496)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=375.90 Aligned_cols=214 Identities=28% Similarity=0.399 Sum_probs=185.3
Q ss_pred EEEEeEEeEeCCCC---CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC----CChHH
Q 039402 1246 IDLLDLQVRYAPQM---PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL----IGLHD 1318 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~---~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~----i~l~~ 1318 (1496)
|+++||+++|+++. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997543 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcccEEEcccc--cccccchhhccCCCC---CCc----HHHHHHHHHHcCCcH-HHHhccCCcccccccCCCCCCchHH
Q 039402 1319 LRSRLSIIPQDP--VMFEGTVRSNLDPLE---EST----DEQIWEALDKCQLGD-EVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1319 LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~-~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
+|+++++++|+| .+|.+|+.+|+.... ..+ ++++.++++.+++.+ +.. ....+||+|||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-----------KSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-----------CCcccCCHHHH
Confidence 899999999998 799999999996321 122 234677788888753 322 23467999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhh
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~ 1466 (1496)
||++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|+|++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998754 47899999999998864 99999999999999999999
Q ss_pred Hhhc
Q 039402 1467 LLEN 1470 (1496)
Q Consensus 1467 Ll~~ 1470 (1496)
++++
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 9753
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=367.99 Aligned_cols=224 Identities=23% Similarity=0.429 Sum_probs=192.2
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCeeCCCC--ChH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISLI--GLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1317 (1496)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999963 4599999999999999999999999999999999999984 899999999998753 345
Q ss_pred HHhcccEEEcccccccccchhhccCCC----CCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1318 DLRSRLSIIPQDPVMFEGTVRSNLDPL----EES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
.+|++++++||+|.+|..|+++|+... +.. .++++.++++..++.+.+.. .......+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHHH
Confidence 678899999999999999999999631 111 23456778888888654422 234456789999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
|++||||++++|+||+|||||++||+.+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999987778999999999998765 9999999999999999999998
Q ss_pred hcCCcHHHH
Q 039402 1469 ENKSSSFSQ 1477 (1496)
Q Consensus 1469 ~~~~s~F~~ 1477 (1496)
+++...|.+
T Consensus 234 ~~~~~~~~~ 242 (250)
T PRK14262 234 ERPKNKLTE 242 (250)
T ss_pred hCCCChHHH
Confidence 765444443
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=382.47 Aligned_cols=216 Identities=25% Similarity=0.414 Sum_probs=190.1
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+. .|++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 4899999999964 359999999999999999999999999999999999999999999999999987653 467899
Q ss_pred EEccccccccc-chhhccCCC-C------CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPL-E------EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~-~------~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
|+||++.+|.. |+++|+... . ..+ ++++.++|+.+++.+...+.| ..||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 99999999975 999999732 1 122 346778899998876655443 468999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
|||||+++|++|+|||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+|+++++
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998764 6899999999999876 99999999999999999999998
Q ss_pred cCCcHH
Q 039402 1470 NKSSSF 1475 (1496)
Q Consensus 1470 ~~~s~F 1475 (1496)
++...|
T Consensus 227 ~p~~~~ 232 (353)
T PRK10851 227 EPATRF 232 (353)
T ss_pred CccchH
Confidence 766544
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=369.40 Aligned_cols=223 Identities=26% Similarity=0.403 Sum_probs=190.5
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCeeCCCC--Ch
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISLI--GL 1316 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l 1316 (1496)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 11 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 11 PQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 36999999999963 3599999999999999999999999999999999999985 799999999998653 34
Q ss_pred HHHhcccEEEcccccccccchhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1317 HDLRSRLSIIPQDPVMFEGTVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1317 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
..+|++++|+||+|.+|..|+++|+... ...+ ++++.++++.+++.+.+. ..++ .....||+||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~----~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLK----SPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhc----CChhhCCHHHHH
Confidence 5678899999999999999999999631 1122 234677888888754321 1223 345689999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
|++|||||+++|+||+|||||++||+.+...+.+.|++..+++|||+|+|+++.+.+ ||+|++|++|++++.|+|+++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667999999999999876 9999999999999999999998
Q ss_pred hcCCcHH
Q 039402 1469 ENKSSSF 1475 (1496)
Q Consensus 1469 ~~~~s~F 1475 (1496)
+++...+
T Consensus 242 ~~~~~~~ 248 (258)
T PRK14268 242 HNPREKS 248 (258)
T ss_pred cCCCCHH
Confidence 7654443
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=365.83 Aligned_cols=217 Identities=40% Similarity=0.684 Sum_probs=194.9
Q ss_pred CCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccC
Q 039402 614 SETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693 (1496)
Q Consensus 614 ~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~ 693 (1496)
....++++|+++.+ +++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|.++|++|+++++
T Consensus 36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~ 110 (282)
T cd03291 36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIM 110 (282)
T ss_pred CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCccccc
Confidence 44579999999852 4699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCC
Q 039402 694 SGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAV 773 (1496)
Q Consensus 694 ~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saL 773 (1496)
+.|++||+.++....+.++.+.++++++.+.+..++.+.++.+++++.+||||||||++||||++.+|+++||||||++|
T Consensus 111 ~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gL 190 (282)
T cd03291 111 PGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190 (282)
T ss_pred ccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 99999999997655555667778888888888889998888999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcch
Q 039402 774 DAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDF 835 (1496)
Q Consensus 774 D~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~ 835 (1496)
|+.+...+.+.++....+++|+|++||+++.+..||++++|++|+++..|+.+++.....++
T Consensus 191 D~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 252 (282)
T cd03291 191 DVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDF 252 (282)
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHH
Confidence 99998888766655555689999999999998889999999999999999999887543333
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=371.75 Aligned_cols=215 Identities=28% Similarity=0.432 Sum_probs=188.8
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++|++++|+++.+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 59999999999744456999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcccc--cccccchhhccCCC---CCCcHH----HHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1325 IIPQDP--VMFEGTVRSNLDPL---EESTDE----QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1325 iIpQdp--~LF~gTIR~NLdp~---~~~sd~----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
|+||+| .++..|+++|+... ...+++ .+.+++++.++.+...+. ..+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHHHH
Confidence 999998 45677999999642 122333 356677888876654443 3589999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhc
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
||+++|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+..||+|++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998653 4899999999999888999999999999999999998764
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=367.74 Aligned_cols=223 Identities=24% Similarity=0.428 Sum_probs=193.8
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCeeCCC--CChH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISL--IGLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1317 (1496)
.++++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|+|+.+ |++|+|.+||.+++. .+..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 4789999999964 359999999999999999999999999999999999975 389999999999875 3467
Q ss_pred HHhcccEEEcccccccccchhhccCCC-C--CC-----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1318 DLRSRLSIIPQDPVMFEGTVRSNLDPL-E--ES-----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~gTIR~NLdp~-~--~~-----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
++|++++|+||+|.+|.+|+++|+... . .. .++++.++++.+++.+.+... ....+.+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHHH
Confidence 789999999999999999999999732 1 11 124567789999987765432 23456789999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
|+|||||++++|+||+|||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778999999999999887 8999999999999999999998
Q ss_pred hcCCcHHH
Q 039402 1469 ENKSSSFS 1476 (1496)
Q Consensus 1469 ~~~~s~F~ 1476 (1496)
+.+.+.+.
T Consensus 234 ~~~~~~~~ 241 (250)
T PRK14266 234 INPKDKRT 241 (250)
T ss_pred hCCCChHH
Confidence 77665543
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=366.93 Aligned_cols=223 Identities=24% Similarity=0.442 Sum_probs=191.5
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC--C---CccEEEECCeeCCCC--C
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE--P---AAGQILIDGIDISLI--G 1315 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e--p---~~G~I~IDG~dI~~i--~ 1315 (1496)
+|.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++... .
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 467999999999974 359999999999999999999999999999999999986 4 689999999999754 4
Q ss_pred hHHHhcccEEEcccccccc-cchhhccCC-C---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch
Q 039402 1316 LHDLRSRLSIIPQDPVMFE-GTVRSNLDP-L---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1386 (1496)
Q Consensus 1316 l~~LR~~i~iIpQdp~LF~-gTIR~NLdp-~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~G 1386 (1496)
...+|++++++||++.+|. .|+++|+.. + ...+ ++++.++++.+++.+.+... ....+.+||+|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-------LKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-------hhCCcCcCCHH
Confidence 4578899999999999998 599999963 1 1111 34567788888886544322 22346789999
Q ss_pred HHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChh
Q 039402 1387 QRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPA 1465 (1496)
Q Consensus 1387 QrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~ 1465 (1496)
||||++||||++++|++|||||||++||+.+...+.+.|++..++.|||+++|+++.+.. ||+|++|++|+|++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777899999999999865 9999999999999999999
Q ss_pred hHhhcCCcH
Q 039402 1466 NLLENKSSS 1474 (1496)
Q Consensus 1466 ~Ll~~~~s~ 1474 (1496)
++..++...
T Consensus 233 ~~~~~~~~~ 241 (252)
T PRK14256 233 KIFTTPEKK 241 (252)
T ss_pred HHHhCCCcH
Confidence 998765443
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=364.17 Aligned_cols=211 Identities=27% Similarity=0.390 Sum_probs=182.8
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.+. ++++++
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 789999999964 35999999999999999999999999999999999999999999999999998776543 458999
Q ss_pred Ecccccc-cccchhhccCCCC---CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1326 IPQDPVM-FEGTVRSNLDPLE---EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1326 IpQdp~L-F~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+||+|.+ +..|+++|+.... ..+ ++++.+.++..++.+. ......+||+|||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999987 5679999996421 122 2345666776666433 2334468999999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhc
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
+++|+||||||||++||+.+.+.+.+.|++.. +++|+|+++|+++.+..||+|++|++|++++.|+++++.++
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999999875 37899999999999988999999999999999999999864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=361.60 Aligned_cols=202 Identities=26% Similarity=0.402 Sum_probs=176.0
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++++.+ ..++++++
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 578999999964 35999999999999999999999999999999999999999999999999998654 35778999
Q ss_pred Ecccccccc-cchhhccCCC-C--CC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1326 IPQDPVMFE-GTVRSNLDPL-E--ES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1326 IpQdp~LF~-gTIR~NLdp~-~--~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+||+|.+|. .|+++|+... . .. .++++.++++.+++.+...+.+ .+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999886 5999999631 1 11 2345778888888876544433 57999999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEec
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g 1462 (1496)
+++|++|||||||++||+++...+.+.|++.. .++|||+|+|+++.+.+ ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999864 37899999999998866 9999999999998865
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=374.39 Aligned_cols=214 Identities=29% Similarity=0.429 Sum_probs=187.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCC--CCChHHHhcc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS--LIGLHDLRSR 1322 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~--~i~l~~LR~~ 1322 (1496)
.|+++|++++|+++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+. ..+..++|++
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 59999999999633 45999999999999999999999999999999999999999999999999984 3446678999
Q ss_pred cEEEcccc--cccccchhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH
Q 039402 1323 LSIIPQDP--VMFEGTVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1393 (1496)
Q Consensus 1323 i~iIpQdp--~LF~gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~L 1393 (1496)
++|+||+| .+|+.|+++|+... ...+ ++.+.++++.+++.+... ....+||+|||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHHH
Confidence 99999998 57899999999631 1223 234677788888865432 3356899999999999
Q ss_pred HHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhc-ccCEEEEEeCCeEeEecChhhHhhc
Q 039402 1394 GRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVI-DSDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1394 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
||||+.+|+||||||||++||+.+...+.+.|++..+ ++|||+++|+++.+. .||||++|++|++++.|+++++++.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998754 789999999999997 4999999999999999999999863
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=367.43 Aligned_cols=219 Identities=29% Similarity=0.430 Sum_probs=188.5
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC--C---CccEEEECCeeCCCC--ChH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE--P---AAGQILIDGIDISLI--GLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e--p---~~G~I~IDG~dI~~i--~l~ 1317 (1496)
.++++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+.+ | ++|+|.+||.++... ...
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 5899999999964 359999999999999999999999999999999999953 6 499999999999753 345
Q ss_pred HHhcccEEEcccccccccchhhccCCC----CC----CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1318 DLRSRLSIIPQDPVMFEGTVRSNLDPL----EE----STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
.+|++++++||+|.+|+.|+++|+... +. ..++++.++++.+++.+.+.. .......+||+||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-------RLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-------HHhcCcccCCHHHHH
Confidence 678899999999999999999999621 11 123456778888887654332 233455789999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
|++||||++++|++|||||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|++++++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999865 9999999999999999999998
Q ss_pred hcCC
Q 039402 1469 ENKS 1472 (1496)
Q Consensus 1469 ~~~~ 1472 (1496)
+++.
T Consensus 236 ~~~~ 239 (252)
T PRK14239 236 MNPK 239 (252)
T ss_pred hCCC
Confidence 7654
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=362.42 Aligned_cols=212 Identities=25% Similarity=0.443 Sum_probs=179.7
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHH-hcccE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-RSRLS 1324 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i~ 1324 (1496)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999964 359999999999999999999999999999999999999999999999999988877664 67899
Q ss_pred EEccccccccc-chhhccCCCCC-Cc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPLEE-ST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL 1398 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~~~-~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL 1398 (1496)
++||+|.+|.+ |+++|+..... +. .+++.++++..+ +++........+||+|||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP----------RLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH----------hhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 99999999987 99999964221 11 122333444331 1222233445679999999999999999
Q ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1399 KRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1399 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
++|++|+|||||++||+++...+.+.|++.. .++|+|+++|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999998865 47899999999999866 99999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=364.10 Aligned_cols=208 Identities=25% Similarity=0.344 Sum_probs=181.2
Q ss_pred eEEEEeEEeEeCCCC--CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH---H
Q 039402 1245 KIDLLDLQVRYAPQM--PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---L 1319 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~--~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---L 1319 (1496)
.++++||+++|+.+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.+. +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997532 46999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cccEEEccccccccc-chhhccCC---CCCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 039402 1320 R-SRLSIIPQDPVMFEG-TVRSNLDP---LEES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1390 (1496)
Q Consensus 1320 R-~~i~iIpQdp~LF~g-TIR~NLdp---~~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQl 1390 (1496)
| ++++|+||+|.+|.+ |+++|+.. +... .++++.++++.+++.+...+. ..+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR-----------PSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHH
Confidence 3 679999999999876 99999863 1121 234577888888876544332 35799999999
Q ss_pred HHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcccCEEEEEeCCeEeEecC
Q 039402 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDN 1463 (1496)
Q Consensus 1391 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~ 1463 (1496)
++||||++++|+||||||||++||+.+...+.+.|++.. +++|||+|+|+++.+..+|++++|++|+|++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999864 4789999999999999999999999999998765
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=373.05 Aligned_cols=217 Identities=27% Similarity=0.404 Sum_probs=187.3
Q ss_pred EEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHH----hcc
Q 039402 1247 DLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL----RSR 1322 (1496)
Q Consensus 1247 ~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L----R~~ 1322 (1496)
.++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 46688888864 358999999999999999999999999999999999999999999999999988765543 468
Q ss_pred cEEEcccccccc-cchhhccCCC---CCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1323 LSIIPQDPVMFE-GTVRSNLDPL---EES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1323 i~iIpQdp~LF~-gTIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
++++||+|.+|. .|+++|+... ... .++++.++++.+++.+.+...| .+||+|||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 999999999885 5999999631 111 2345778899999877665554 36899999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcC
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~ 1471 (1496)
||++++|+||||||||++||+.+.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999998643 7899999999999865 9999999999999999999998766
Q ss_pred CcHHH
Q 039402 1472 SSSFS 1476 (1496)
Q Consensus 1472 ~s~F~ 1476 (1496)
...|.
T Consensus 253 ~~~~~ 257 (269)
T cd03294 253 ANDYV 257 (269)
T ss_pred CcHHH
Confidence 55443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=367.74 Aligned_cols=221 Identities=24% Similarity=0.412 Sum_probs=189.4
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC--C---CccEEEECCeeCCC--CChH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE--P---AAGQILIDGIDISL--IGLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e--p---~~G~I~IDG~dI~~--i~l~ 1317 (1496)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999964 359999999999999999999999999999999999987 3 59999999999864 4456
Q ss_pred HHhcccEEEcccccccccchhhccCCC----CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1318 DLRSRLSIIPQDPVMFEGTVRSNLDPL----EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
.+|++++|+||+|.+|.+|+++|+... +..+ ++++.++++..++.+.+.. .......+||+||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD-------RLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 788999999999999999999999532 1112 2345667888887654422 123455689999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
|++||||++++|+||+|||||++||+.+...+.+.|++..+++|+|+|+|+++.+.+ ||+|++|++|++++.|+|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987677999999999999875 9999999999999999999998
Q ss_pred hcCCcH
Q 039402 1469 ENKSSS 1474 (1496)
Q Consensus 1469 ~~~~s~ 1474 (1496)
+++...
T Consensus 243 ~~~~~~ 248 (259)
T PRK14274 243 SNPDDQ 248 (259)
T ss_pred hCCCCH
Confidence 765443
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=367.81 Aligned_cols=218 Identities=28% Similarity=0.434 Sum_probs=188.7
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC-------
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG------- 1315 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~------- 1315 (1496)
.+.++++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999964 35999999999999999999999999999999999999999999999999986431
Q ss_pred ------hHHHhcccEEEccccccccc-chhhccCCC----CCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCC
Q 039402 1316 ------LHDLRSRLSIIPQDPVMFEG-TVRSNLDPL----EES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380 (1496)
Q Consensus 1316 ------l~~LR~~i~iIpQdp~LF~g-TIR~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1380 (1496)
...+|++++++||+|.+|.+ |+++|+... ... .++++.+++++.++.+... ....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCc
Confidence 34678899999999999975 999999631 111 2345778888888865532 1234
Q ss_pred CCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeE
Q 039402 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLI 1458 (1496)
Q Consensus 1381 ~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~I 1458 (1496)
..||+|||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.+ ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 6799999999999999999999999999999999999999999998864 37999999999999987 999999999999
Q ss_pred eEecChhhHhhcCC
Q 039402 1459 EEFDNPANLLENKS 1472 (1496)
Q Consensus 1459 vE~g~p~~Ll~~~~ 1472 (1496)
++.|+++++++.+.
T Consensus 231 ~~~~~~~~~~~~~~ 244 (257)
T PRK10619 231 EEEGAPEQLFGNPQ 244 (257)
T ss_pred EEeCCHHHhhhCcc
Confidence 99999999986543
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=368.97 Aligned_cols=219 Identities=25% Similarity=0.466 Sum_probs=188.7
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCeeCCC--CChH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISL--IGLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1317 (1496)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 6999999999964 459999999999999999999999999999999999865 789999999999875 3445
Q ss_pred HHhcccEEEcccccccccchhhccCCC----CC----CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1318 DLRSRLSIIPQDPVMFEGTVRSNLDPL----EE----STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
.+|++++|+||+|.+|.+|+++|+... .. ..++.+.++++.+++.+.+.. .......+||+||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD-------RLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHH-------HHhcCcccCCHHHHH
Confidence 678899999999999999999998631 11 123457778888887533321 123446789999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
|++|||||+++|+||||||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|++++++
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988667899999999998865 9999999999999999999998
Q ss_pred hcCC
Q 039402 1469 ENKS 1472 (1496)
Q Consensus 1469 ~~~~ 1472 (1496)
.++.
T Consensus 252 ~~~~ 255 (268)
T PRK14248 252 TSPK 255 (268)
T ss_pred hCCC
Confidence 7643
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=365.81 Aligned_cols=222 Identities=28% Similarity=0.464 Sum_probs=190.8
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCeeCCC--CCh
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISL--IGL 1316 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l 1316 (1496)
|.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 57999999999964 3599999999999999999999999999999999999863 69999999999875 455
Q ss_pred HHHhcccEEEcccccccccchhhccCCCC---C-C----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 039402 1317 HDLRSRLSIIPQDPVMFEGTVRSNLDPLE---E-S----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1317 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~-~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
..+|++++++||+|.+|..|+++|+.... . . .++++.++++.+++.+.+.. .......+||+|||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHHH
Confidence 67899999999999999999999996321 1 1 23456777888887654432 22345578999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhH
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
||++||||++++|++|+|||||++||+.+...+.+.|++.-+++|||+++|+++.+.+ ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999998876 999999999999999999999
Q ss_pred hhcCCcH
Q 039402 1468 LENKSSS 1474 (1496)
Q Consensus 1468 l~~~~s~ 1474 (1496)
..++...
T Consensus 233 ~~~~~~~ 239 (250)
T PRK14240 233 FTNPKDK 239 (250)
T ss_pred HhCCCCh
Confidence 8654433
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=371.19 Aligned_cols=202 Identities=33% Similarity=0.439 Sum_probs=174.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEE
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~y 685 (1496)
.++++|++.+|.. ..+++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.++|+ +|+
T Consensus 3 ~i~l~~v~K~yg~---~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 5899999999962 12999999999999999999999999999999999999999999999995 599
Q ss_pred EccCCccCC-CcHHHHhccCCCCC-------HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 686 VAQSPWIQS-GKIEDNILFGKEMN-------RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 686 v~Q~~~i~~-~ti~eNI~~g~~~~-------~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
|+|+.-++. .||+|||.||.... +++.+++.+..++++.++ +++.+|||||||||||||||
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~-----------r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN-----------RKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHh-----------cCcccCChhhHHHHHHHHHH
Confidence 999999875 59999999997542 455566666666665554 56789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
.++|+++|||||+|+||++....+-.++.+... -+.|+|+||||..++. .+|+|++|++|+|.+.|++.|+.+..
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 999999999999999999998888666544332 3789999999987765 59999999999999999999997653
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=367.96 Aligned_cols=221 Identities=27% Similarity=0.414 Sum_probs=190.6
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCeeCCC--CCh
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISL--IGL 1316 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l 1316 (1496)
+.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. ...
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 46999999999964 3599999999999999999999999999999999999985 48999999999864 445
Q ss_pred HHHhcccEEEcccccccccchhhccCCC-------CCCc-HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 039402 1317 HDLRSRLSIIPQDPVMFEGTVRSNLDPL-------EEST-DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1317 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~-------~~~s-d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
..+|.+++++||+|.+|+.|+++|+... .+.. ++.+.++++.+++.+.+... ....+..||+|||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK-------LNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHHH
Confidence 6788899999999999999999999631 1112 23466888888887554322 2345678999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEe-----CCeEeEec
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLN-----HGLIEEFD 1462 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~-----~G~IvE~g 1462 (1496)
||+||||||+++|++|+|||||++||+.+...+.+.|++..+++|||+|||+++.+.+ ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999987777999999999999976 99999998 59999999
Q ss_pred ChhhHhhcCCc
Q 039402 1463 NPANLLENKSS 1473 (1496)
Q Consensus 1463 ~p~~Ll~~~~s 1473 (1496)
+++++++++..
T Consensus 237 ~~~~~~~~~~~ 247 (259)
T PRK14260 237 VTTQIFSNPLD 247 (259)
T ss_pred CHHHHhcCCCC
Confidence 99999876543
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=376.32 Aligned_cols=224 Identities=25% Similarity=0.397 Sum_probs=190.2
Q ss_pred eEEEEeEEeEeCCC--------CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCCh
Q 039402 1245 KIDLLDLQVRYAPQ--------MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL 1316 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~--------~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l 1316 (1496)
-|+++|++++|+.. ...+|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 58999999999631 2469999999999999999999999999999999999999999999999999998864
Q ss_pred ---HHHhcccEEEccccc--cccc-chhhccC-CC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCC
Q 039402 1317 ---HDLRSRLSIIPQDPV--MFEG-TVRSNLD-PL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGEN 1382 (1496)
Q Consensus 1317 ---~~LR~~i~iIpQdp~--LF~g-TIR~NLd-p~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1382 (1496)
..+|++|++|||||. |+.. |+.+|+. +. ...+ .+++.++|+++++.+. .++. ....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~----~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE------HYDR----YPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH------HhcC----CCcc
Confidence 356889999999994 5553 8888874 21 1112 3457888999988632 1222 2357
Q ss_pred CCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEe
Q 039402 1383 WSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIE 1459 (1496)
Q Consensus 1383 LS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~Iv 1459 (1496)
||||||||++|||||+.+|+|||+||||++||..+.+.|.+.|++..+ ++|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988653 7899999999999975 9999999999999
Q ss_pred EecChhhHhhcCCcHHHHH
Q 039402 1460 EFDNPANLLENKSSSFSQL 1478 (1496)
Q Consensus 1460 E~g~p~~Ll~~~~s~F~~l 1478 (1496)
|.|+++++++++...|.+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EECCHHHHhcCCCCHHHHH
Confidence 9999999998765555543
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=371.10 Aligned_cols=214 Identities=23% Similarity=0.361 Sum_probs=189.4
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
-++++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 3 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 37899999999643 34999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcccc--cccccchhhccCCCC---CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1325 IIPQDP--VMFEGTVRSNLDPLE---EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1325 iIpQdp--~LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
++||+| .+|+.|+++|+.... ..+ ++.+.++++.+++.+.....| ..||+|||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 478889999996211 222 345788899999876655543 468999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhc-ccCEEEEEeCCeEeEecChhhHhhc
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVI-DSDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+. .||||++|++|++++.|+++++++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999988653 789999999999996 5999999999999999999999854
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=377.21 Aligned_cols=222 Identities=23% Similarity=0.366 Sum_probs=189.7
Q ss_pred eEEEEeEEeEeCCC-----------CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC
Q 039402 1245 KIDLLDLQVRYAPQ-----------MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL 1313 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~-----------~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~ 1313 (1496)
-++++|++++|... ...+++|+||+|++||.+||||+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 59999999999631 2469999999999999999999999999999999999999999999999999998
Q ss_pred CChHH---HhcccEEEcccc--ccc-ccchhhccCC----CC-CCcH----HHHHHHHHHcCCcH-HHHhccCCcccccc
Q 039402 1314 IGLHD---LRSRLSIIPQDP--VMF-EGTVRSNLDP----LE-ESTD----EQIWEALDKCQLGD-EVRKKEGKLDSKVT 1377 (1496)
Q Consensus 1314 i~l~~---LR~~i~iIpQdp--~LF-~gTIR~NLdp----~~-~~sd----~eI~~aL~~~~L~~-~i~~lp~gLdt~v~ 1377 (1496)
++..+ +|++++|||||| .+| ..||++|+.. +. ..+. +.+.++++.+++.+ ...+
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~---------- 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR---------- 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcC----------
Confidence 87544 678999999999 477 4699999851 11 2332 34567788888743 2222
Q ss_pred cCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEe
Q 039402 1378 ENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLN 1454 (1496)
Q Consensus 1378 e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~ 1454 (1496)
...+||||||||++|||||+.+|++||+||||++||..+...|.+.|++.-+ +.|+|+|||+++.+.. ||||+||+
T Consensus 158 -~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 158 -YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 3457999999999999999999999999999999999999999999987643 7899999999999986 99999999
Q ss_pred CCeEeEecChhhHhhcCCcHHHH
Q 039402 1455 HGLIEEFDNPANLLENKSSSFSQ 1477 (1496)
Q Consensus 1455 ~G~IvE~g~p~~Ll~~~~s~F~~ 1477 (1496)
+|+|+|.|+++++++++...|.+
T Consensus 237 ~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 237 LGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CCEEEEEcCHHHHHcCCCCHHHH
Confidence 99999999999999876555654
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=336.54 Aligned_cols=467 Identities=21% Similarity=0.289 Sum_probs=335.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHH
Q 039402 969 IVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAF 1048 (1496)
Q Consensus 969 ~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~ 1048 (1496)
.-|.++..+-.+...+.......+|.+.-.+++.++.++++.+|+.-+++-..+|++.++++|+.++... ...+..+.+
T Consensus 52 ~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~-~s~lp~~~q 130 (546)
T COG4615 52 PEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFA-FSRLPELVQ 130 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeeh-HhhhHHHHH
Confidence 3344444444455566677788899999999999999999999999999999999999999999999843 333455778
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHH
Q 039402 1049 SIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRD 1128 (1496)
Q Consensus 1049 ~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~ 1128 (1496)
+.+..+++.+.+++.+|+++.+.+..+++.++.+..-++..-+-.+.-.++...+.++++..++|.+..+..+...+...
T Consensus 131 a~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h 210 (546)
T COG4615 131 AIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVH 210 (546)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHH
Confidence 88888999999999999988776655554444332221111111112223345678899999999999888765544433
Q ss_pred HHH------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HHHHHHHHH
Q 039402 1129 RNM------KLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYG---LTLNTLLAT 1199 (1496)
Q Consensus 1129 ~~~------~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~y~---l~l~~~l~~ 1199 (1496)
... ..-+...+.......+..|..+.+-.+..++ +.+.+..+.-+.. .+.++. +-+-.++..
T Consensus 211 ~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlv------f~lal~~~w~st~---~a~tivlvlLflr~pL~s 281 (546)
T COG4615 211 NNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLV------FWLALSLGWASTN---VAATIVLVLLFLRTPLLS 281 (546)
T ss_pred hhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH------HHHHHhhccchhh---HHHHHHHHHHHHhhHHHH
Confidence 322 1111222222222344455554332222211 1111111211111 222233 334556666
Q ss_pred HHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEE
Q 039402 1200 LIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIV 1279 (1496)
Q Consensus 1200 ~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIV 1279 (1496)
++-..-.+-..-++..||.++...|..+. .+...+.++| ..||++||.|.|.++. --+..||++|+.||.|=|+
T Consensus 282 ~vgilP~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFli 355 (546)
T COG4615 282 AVGILPTLLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLI 355 (546)
T ss_pred HHhhhhHHHHHHHHHHHHHHhhcCCcccc--CCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEEE
Confidence 77777777788899999998876333221 1222233335 4799999999998764 3478899999999999999
Q ss_pred cCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHc
Q 039402 1280 GRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKC 1359 (1496)
Q Consensus 1280 GrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~ 1359 (1496)
|.+||||||++++|.|++.|++|+|++||.+++.-++++.|+-++-|.-|-+||+.++ -|-+..+.+.|-.-|++.
T Consensus 356 G~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~LqrL 431 (546)
T COG4615 356 GGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQRL 431 (546)
T ss_pred CCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998765 344456777777777777
Q ss_pred CCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEE
Q 039402 1360 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTI 1437 (1496)
Q Consensus 1360 ~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~I 1437 (1496)
.+.....-..+.+. ...||-|||.|+++--|+|-+.+|+++||=-|--||.=++...+.+--.. .|+||+.|
T Consensus 432 el~~ktsl~d~~fs------~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aI 505 (546)
T COG4615 432 ELAHKTSLNDGRFS------NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAI 505 (546)
T ss_pred HHhhhhcccCCccc------ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEE
Confidence 66544332222121 13589999999999999999999999999999999999998887764433 48999999
Q ss_pred ccCcchhcccCEEEEEeCCeEeEe
Q 039402 1438 AHRITSVIDSDLVLLLNHGLIEEF 1461 (1496)
Q Consensus 1438 AHRl~ti~~~DrIlVL~~G~IvE~ 1461 (1496)
+|+=+-...+||++-|++|+++|.
T Consensus 506 sHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 506 SHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred ecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999999999985
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=359.81 Aligned_cols=208 Identities=27% Similarity=0.386 Sum_probs=182.2
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++|+++++
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999964 3599999999999999999999999999999999999999999999999998763 3567889999
Q ss_pred Eccccccccc-chhhccCCC---CCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1326 IPQDPVMFEG-TVRSNLDPL---EES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+||+|.+|.+ |+++|+... ... .++++.++++..++.+.....+ .+||+|||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999998876 999999531 111 2456788899998876544433 46899999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhH
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
+.+|++|+|||||++||+++.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999988653 6899999999999876 999999999999999998764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=359.58 Aligned_cols=205 Identities=26% Similarity=0.402 Sum_probs=178.8
Q ss_pred EEEEeEEeEeCCCC--CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1246 IDLLDLQVRYAPQM--PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~--~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
|+++||+++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999996532 269999999999999999999999999999999999999999999999999976 456788999
Q ss_pred EEEccccccccc-chhhccCCC---CCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPL---EES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
+++||+|.+|.+ |+++|+... ... .++++.+++++.++.+...+ ...+||+|||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999986 999998521 111 23467788888887655443 34578999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEec
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g 1462 (1496)
|++++|+||||||||++||+.+.+.+.+.|++.. +++|+|+|+|+++.+.+ ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999864 47899999999999876 9999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=370.45 Aligned_cols=215 Identities=27% Similarity=0.389 Sum_probs=190.1
Q ss_pred eEEEEeEEeEeCCC-CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1245 KIDLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~-~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
-|+++||+++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 24599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcccc--cccccchhhccCCC-C--CCcHH----HHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1324 SIIPQDP--VMFEGTVRSNLDPL-E--ESTDE----QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1324 ~iIpQdp--~LF~gTIR~NLdp~-~--~~sd~----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
+|+||+| .++..|+.+||... . ..+++ ++.++++.+++.+..... ...||+|||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 47788999999632 1 23333 356788888887654433 357899999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhc
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
|||+++|+||||||||++||+.+...+.+.|++..+ ++|||+|+|+++.+..||+|++|++|++++.|++++++++
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999987754 7899999999999988999999999999999999999864
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=375.96 Aligned_cols=213 Identities=27% Similarity=0.413 Sum_probs=186.2
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
..|+++||+++|.. ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.|+|.|+...+ ...|++|
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 46999999999964 46999999999999999999999999999999999999999999999999998754 4578999
Q ss_pred EEEcccccccc-cchhhccCCCC---CCcH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1324 SIIPQDPVMFE-GTVRSNLDPLE---ESTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1324 ~iIpQdp~LF~-gTIR~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
||+||+|.+|. .|+++|+..+. ..++ +++.++++.+++.+. .++++ .+||+|||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK-------ADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchH-------hcCch----hhCCHHHHHHHHHHH
Confidence 99999999886 59999997322 1222 345677777777543 33333 469999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
||+++|++|+|||||++||+.+...+.+.|++.. +++|||+++|+++.+.. ||+|++|++|++++.|+|+++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999875 37899999999999976 999999999999999999999764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=364.81 Aligned_cols=219 Identities=26% Similarity=0.434 Sum_probs=189.7
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-----ccEEEECCeeCCCC--ChH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA-----AGQILIDGIDISLI--GLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~-----~G~I~IDG~dI~~i--~l~ 1317 (1496)
.|+++|++++|.. +++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 6899999999964 45999999999999999999999999999999999999987 69999999998753 456
Q ss_pred HHhcccEEEcccccccccchhhccCCCC---C-C----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1318 DLRSRLSIIPQDPVMFEGTVRSNLDPLE---E-S----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~-~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
.+|++++++||+|.+|.+|+++|+.... . . .++.+.++++..++.+.+.. .....+.+||+||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHHHH
Confidence 7899999999999999999999996321 1 1 12345667777777654432 234567789999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
|++||||++++|++|||||||++||+.+...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999987 7999999999999999999997
Q ss_pred hcCC
Q 039402 1469 ENKS 1472 (1496)
Q Consensus 1469 ~~~~ 1472 (1496)
..+.
T Consensus 235 ~~~~ 238 (251)
T PRK14249 235 SRPR 238 (251)
T ss_pred hCCC
Confidence 6543
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=368.14 Aligned_cols=221 Identities=25% Similarity=0.414 Sum_probs=192.3
Q ss_pred CcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCeeCCC--C
Q 039402 1242 SHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISL--I 1314 (1496)
Q Consensus 1242 ~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i 1314 (1496)
..+.|+++|++++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.|+.. .
T Consensus 22 ~~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 22 EQTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CCcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 3457999999999964 3599999999999999999999999999999999999884 89999999999875 3
Q ss_pred ChHHHhcccEEEcccccccccchhhccCCC---CC--C---cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch
Q 039402 1315 GLHDLRSRLSIIPQDPVMFEGTVRSNLDPL---EE--S---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1386 (1496)
Q Consensus 1315 ~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~--~---sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~G 1386 (1496)
+...+|++++|+||++.+|.+|+++|+... .. . .++++.++++.+++.+.+.. .....+.+||+|
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHH
Confidence 456789999999999999999999999632 11 1 13457888888888765432 234456789999
Q ss_pred HHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChh
Q 039402 1387 QRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPA 1465 (1496)
Q Consensus 1387 QrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~ 1465 (1496)
||||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999988778999999999999875 9999999999999999999
Q ss_pred hHhhcC
Q 039402 1466 NLLENK 1471 (1496)
Q Consensus 1466 ~Ll~~~ 1471 (1496)
++.+++
T Consensus 253 ~~~~~~ 258 (272)
T PRK14236 253 TLFTSP 258 (272)
T ss_pred HHhcCC
Confidence 998654
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=366.21 Aligned_cols=215 Identities=27% Similarity=0.440 Sum_probs=186.8
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC----------
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---------- 1315 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---------- 1315 (1496)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 579999999964 35999999999999999999999999999999999999999999999999997653
Q ss_pred ---hHHHhcccEEEcccccccc-cchhhccCCC----CCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCC
Q 039402 1316 ---LHDLRSRLSIIPQDPVMFE-GTVRSNLDPL----EES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1383 (1496)
Q Consensus 1316 ---l~~LR~~i~iIpQdp~LF~-gTIR~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1383 (1496)
...+|++++++||++.+|. .|+++|+... ... .++++.++++..++.+...+. ...|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-----------PAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-----------hhhc
Confidence 2467889999999999885 7999999631 111 234577888888876654433 3578
Q ss_pred CchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeE
Q 039402 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEE 1460 (1496)
Q Consensus 1384 S~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE 1460 (1496)
|+|||||++||||++++|++|+|||||++||+.+...+.+.|++..+ ++|+|+|+|+++.+.+ ||++++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998653 7899999999999965 99999999999999
Q ss_pred ecChhhHhhcCCc
Q 039402 1461 FDNPANLLENKSS 1473 (1496)
Q Consensus 1461 ~g~p~~Ll~~~~s 1473 (1496)
.|+++++.+++..
T Consensus 228 ~g~~~~~~~~~~~ 240 (252)
T TIGR03005 228 QGKPDEIFRQPKE 240 (252)
T ss_pred eCCHHHHhcCCCc
Confidence 9999999876543
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=384.32 Aligned_cols=220 Identities=27% Similarity=0.436 Sum_probs=194.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.++++|++++|.. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+++..++|++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999964 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccc-cccchhhccCCCC-----------CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1325 IIPQDPVM-FEGTVRSNLDPLE-----------ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1325 iIpQdp~L-F~gTIR~NLdp~~-----------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
++||++.+ |+.|+++|+.... ..+++.+.++++.+++.+...+. ..+||+|||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----------~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----------VTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHH
Confidence 99999987 6779999995321 12245688999999997665432 3579999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
|||||+++|+||+|||||++||+.+...+.+.|++.. .+.|||+++|+++.+.. ||||++|++|++++.|+|++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999875 47899999999999965 999999999999999999999854
Q ss_pred CCcHHHHHH
Q 039402 1471 KSSSFSQLV 1479 (1496)
Q Consensus 1471 ~~s~F~~l~ 1479 (1496)
..+.+++
T Consensus 230 --~~l~~~~ 236 (402)
T PRK09536 230 --DTLRAAF 236 (402)
T ss_pred --HHHHHHh
Confidence 2344444
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=381.74 Aligned_cols=218 Identities=23% Similarity=0.413 Sum_probs=192.4
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCc--cEEEECCeeCCCCChHHHh
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA--GQILIDGIDISLIGLHDLR 1320 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~--G~I~IDG~dI~~i~l~~LR 1320 (1496)
.|.|+++||+++|.. ..+|+|+||+|++||.+||+|+||||||||+++|.|+.+|++ |+|.+||.++...+. .+
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 478999999999964 359999999999999999999999999999999999999999 999999999987665 35
Q ss_pred cccEEEccccccccc-chhhccCC-CC--CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1321 SRLSIIPQDPVMFEG-TVRSNLDP-LE--EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1321 ~~i~iIpQdp~LF~g-TIR~NLdp-~~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
++|++++|++.+|.. |+++|+.. .. ..+ ++++.++++.++|.+...+.| .+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999976 99999962 21 222 245777888888877666555 468999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC---CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS---DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~---~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
|||||+++|++|+||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|+||++|++++.|+|+++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999987654 6899999999999866 9999999999999999999999
Q ss_pred hcCCcHH
Q 039402 1469 ENKSSSF 1475 (1496)
Q Consensus 1469 ~~~~s~F 1475 (1496)
+++...|
T Consensus 228 ~~p~~~~ 234 (362)
T TIGR03258 228 DAPADGF 234 (362)
T ss_pred hCcCcHH
Confidence 8876655
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=360.08 Aligned_cols=218 Identities=29% Similarity=0.434 Sum_probs=190.3
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~ 684 (1496)
++++|+++.|+. ..+++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~l~~~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKP-DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCC-CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 468899999953 2357999999999999999999999999999999999999999999999883 69
Q ss_pred EEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 039402 685 YVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDI 763 (1496)
Q Consensus 685 yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 763 (1496)
|++|++++++.|++||+.++.. ...++..+.++..++.+.++.+|.|.++..++++.+|||||||||+||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999999998653 334445555666777777888888888888999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHH
Q 039402 764 YLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFME 837 (1496)
Q Consensus 764 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~ 837 (1496)
+||||||++||+.+...+.+. +..+.+++|+|++||+++++..||++++|++|++++.|+.+++.+....|..
T Consensus 160 lllDEP~~~LD~~~~~~l~~~-l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 232 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRN-MHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAY 232 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHH
Confidence 999999999999998888654 5545568999999999999877999999999999999999998876554544
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=356.56 Aligned_cols=198 Identities=25% Similarity=0.382 Sum_probs=174.2
Q ss_pred EEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEE
Q 039402 1247 DLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSII 1326 (1496)
Q Consensus 1247 ~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iI 1326 (1496)
+++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 459999999999999999999999999999999999999999999999999864 4577889999
Q ss_pred cccc--cccccchhhccCCCC---CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 039402 1327 PQDP--VMFEGTVRSNLDPLE---ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS 1401 (1496)
Q Consensus 1327 pQdp--~LF~gTIR~NLdp~~---~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~ 1401 (1496)
||+| .+|..|+++|+.... ...++++.++++.+++.+...+.| ..||+|||||++||||++++|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCC
Confidence 9998 467899999997421 123457889999999877655444 368999999999999999999
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEe
Q 039402 1402 KILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIE 1459 (1496)
Q Consensus 1402 ~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~Iv 1459 (1496)
++|+|||||++||+.+.+.+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999863 57899999999999976 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=360.82 Aligned_cols=202 Identities=29% Similarity=0.418 Sum_probs=175.3
Q ss_pred EEEEeEEeEeCCCC--CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH----H
Q 039402 1246 IDLLDLQVRYAPQM--PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD----L 1319 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~--~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~----L 1319 (1496)
|+++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996531 46999999999999999999999999999999999999999999999999998876433 4
Q ss_pred hcccEEEccccccccc-chhhccCCC---CCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 039402 1320 RSRLSIIPQDPVMFEG-TVRSNLDPL---EES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1391 (1496)
Q Consensus 1320 R~~i~iIpQdp~LF~g-TIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll 1391 (1496)
|++++|+||+|.+|.+ |+++|+... ... .++++.++++..++.+...+. ..+||+|||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHY-----------PSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcC-----------hhhcCHHHHHHH
Confidence 6789999999999987 999999632 111 234677888888876554333 357999999999
Q ss_pred HHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcccCEEEEEeCCeE
Q 039402 1392 CLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVIDSDLVLLLNHGLI 1458 (1496)
Q Consensus 1392 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~I 1458 (1496)
+||||++++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 7899999999999888999999999975
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=383.96 Aligned_cols=216 Identities=20% Similarity=0.360 Sum_probs=189.3
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEE
Confidence 4899999999964 359999999999999999999999999999999999999999999999999987664 356899
Q ss_pred EEccccccccc-chhhccCCC-C--CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPL-E--EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~-~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
|+||++.+|.. |+++|+... . ..+ ++++.++++.+++.+...+.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 999999632 1 122 345788899998876554443 4689999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCc
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s 1473 (1496)
|+++|++|+||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999988653 7899999999998875 999999999999999999999987665
Q ss_pred HH
Q 039402 1474 SF 1475 (1496)
Q Consensus 1474 ~F 1475 (1496)
.|
T Consensus 228 ~~ 229 (369)
T PRK11000 228 RF 229 (369)
T ss_pred HH
Confidence 54
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=380.99 Aligned_cols=217 Identities=24% Similarity=0.415 Sum_probs=192.7
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
..++++|++++|.. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++..++.+ ++++
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999964 3589999999999999999999999999999999999999999999999999877654 5689
Q ss_pred EEEccccccccc-chhhccCC-CC--CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDP-LE--EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp-~~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
++++|++.+|.. ||++|+.. .. ..+ ++++.++++..++.+...+.| ..||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 99999963 21 122 345778899999987776665 468999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCC
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKS 1472 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~ 1472 (1496)
||+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+.+.+.. ||+|++|++|+|++.|+|+++++++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998764 7899999999999765 99999999999999999999998876
Q ss_pred cHH
Q 039402 1473 SSF 1475 (1496)
Q Consensus 1473 s~F 1475 (1496)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 555
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=368.87 Aligned_cols=221 Identities=25% Similarity=0.458 Sum_probs=190.7
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCeeCCCC--C
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISLI--G 1315 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~i--~ 1315 (1496)
...|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++... +
T Consensus 37 ~~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 37 ETVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 346999999999964 359999999999999999999999999999999999997 6899999999998653 4
Q ss_pred hHHHhcccEEEcccccccccchhhccCCC------CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1316 LHDLRSRLSIIPQDPVMFEGTVRSNLDPL------EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1316 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~------~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
...+|++++++||+|.+|.+|+++|+... ....++++.++++..++.+.+... ......+||+||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ-------LDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHH-------HhCCcccCCHHHHH
Confidence 56788999999999999999999999631 111345688889998886544321 23445689999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEE-EEeCCeEeEecChhhH
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVL-LLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIl-VL~~G~IvE~g~p~~L 1467 (1496)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|||+|+|+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999876 99975 5799999999999999
Q ss_pred hhcCC
Q 039402 1468 LENKS 1472 (1496)
Q Consensus 1468 l~~~~ 1472 (1496)
++++.
T Consensus 268 ~~~~~ 272 (285)
T PRK14254 268 FENPE 272 (285)
T ss_pred HhCcC
Confidence 86544
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=353.13 Aligned_cols=201 Identities=59% Similarity=0.988 Sum_probs=182.8
Q ss_pred EEEEeeEEEecCCCC--CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCC
Q 039402 618 LDIVDGNFSWDISSH--NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~--~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ 695 (1496)
++++|+++.|..... +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 468999999963211 379999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 039402 696 KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA 775 (1496)
Q Consensus 696 ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~ 775 (1496)
|++||+.++...++++..++.+.+++.+.+..+|.|.++..++++.+||||||||++||||++.+|+++||||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999999877766677778888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hCCcEEEEEccCcCccccCCEEEEEeCCe
Q 039402 776 HTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPAADLILVMKDGK 818 (1496)
Q Consensus 776 ~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 818 (1496)
+..+.+++.++... .+++|+|++||+++.+..||++++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99888887666544 34799999999999987899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=375.71 Aligned_cols=227 Identities=21% Similarity=0.337 Sum_probs=188.4
Q ss_pred eEEEEeEEeEeCCCC--CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC----CCccEEEECCeeCCCCChHH
Q 039402 1245 KIDLLDLQVRYAPQM--PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE----PAAGQILIDGIDISLIGLHD 1318 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~--~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e----p~~G~I~IDG~dI~~i~l~~ 1318 (1496)
-++++|+++.|+... ..+|+||||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 489999999996532 359999999999999999999999999999999999997 48999999999999998776
Q ss_pred Hhc----ccEEEccccc--cccc-chhhcc----CCCCCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCC
Q 039402 1319 LRS----RLSIIPQDPV--MFEG-TVRSNL----DPLEES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1383 (1496)
Q Consensus 1319 LR~----~i~iIpQdp~--LF~g-TIR~NL----dp~~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1383 (1496)
+|+ +|++|||||. ++.. |+.+|+ ...... .++++.++|+++++.+.... ......+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR--------LDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhCCchhC
Confidence 653 6999999995 4432 555544 322111 23567888999998643211 12345679
Q ss_pred CchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhc-ccCEEEEEeCCeEeE
Q 039402 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVI-DSDLVLLLNHGLIEE 1460 (1496)
Q Consensus 1384 S~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~IvE 1460 (1496)
|||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+. .||||+||++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998653 789999999999995 499999999999999
Q ss_pred ecChhhHhhcCCcHHHHHH
Q 039402 1461 FDNPANLLENKSSSFSQLV 1479 (1496)
Q Consensus 1461 ~g~p~~Ll~~~~s~F~~l~ 1479 (1496)
.|+++++++++...|.+..
T Consensus 235 ~g~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQAL 253 (326)
T ss_pred ECCHHHHhhCCCChHHHHH
Confidence 9999999987665565433
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=372.53 Aligned_cols=216 Identities=25% Similarity=0.386 Sum_probs=185.3
Q ss_pred eEEEEeEEeEeCCCC---CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC----CChH
Q 039402 1245 KIDLLDLQVRYAPQM---PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL----IGLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~---~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~----i~l~ 1317 (1496)
.|+++|++++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 359999999999999999999999999999999999999999999999999863 3466
Q ss_pred HHhcccEEEcccc--cccccchhhccCCC---CCCcH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 039402 1318 DLRSRLSIIPQDP--VMFEGTVRSNLDPL---EESTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
..|++++|+||+| .+|+.|+++|+... ...+. +.+.++++.++|.+.+. ......||+|||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHH
Confidence 7888999999998 68889999999521 11232 34567788888753221 123457999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChh
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPA 1465 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~ 1465 (1496)
||++|||||+.+|+||||||||++||+.+...+.+.|++..+ +.|||+|+|+++.+.. ||||++|++|++++.|+++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999988653 7899999999999865 9999999999999999999
Q ss_pred hHhhc
Q 039402 1466 NLLEN 1470 (1496)
Q Consensus 1466 ~Ll~~ 1470 (1496)
+++++
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 98754
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=373.47 Aligned_cols=215 Identities=21% Similarity=0.314 Sum_probs=184.3
Q ss_pred eEEEEeEEeEeCCCC---CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC--------
Q 039402 1245 KIDLLDLQVRYAPQM---PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL-------- 1313 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~---~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~-------- 1313 (1496)
.|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 389999999996543 259999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CChHHHhcccEEEcccc--cccccchhhccCCCC---CCc----HHHHHHHHHHcCCc-HHHHh
Q 039402 1314 ----------------IGLHDLRSRLSIIPQDP--VMFEGTVRSNLDPLE---EST----DEQIWEALDKCQLG-DEVRK 1367 (1496)
Q Consensus 1314 ----------------i~l~~LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~-~~i~~ 1367 (1496)
.....+|++++|+||+| .+|..|+++||.... ..+ ++++.++++.++|. +...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~- 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ- 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-
Confidence 13467889999999987 688899999996321 222 34567788888875 3332
Q ss_pred ccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc
Q 039402 1368 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID 1446 (1496)
Q Consensus 1368 lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~ 1446 (1496)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+..
T Consensus 161 ----------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 161 ----------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 2345799999999999999999999999999999999999999999998764 47899999999998755
Q ss_pred -cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1447 -SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1447 -~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
||||++|++|++++.|+|++++++
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999864
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=363.54 Aligned_cols=212 Identities=25% Similarity=0.366 Sum_probs=186.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHH-hccc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-RSRL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i 1323 (1496)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |.++
T Consensus 2 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3789999999964 359999999999999999999999999999999999999999999999999988876654 5679
Q ss_pred EEEccccccccc-chhhccCCCCC------------C---cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPLEE------------S---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~~~------------~---sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
+++||++.+|.+ |+++|++.... . .++++.++++..++.+.. .....+||+||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-----------DRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHH
Confidence 999999999987 99999964211 1 234567777777765432 23346799999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhh
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~ 1466 (1496)
|||++||||++++|++|+|||||++||+++...+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999976 99999999999999999999
Q ss_pred Hhh
Q 039402 1467 LLE 1469 (1496)
Q Consensus 1467 Ll~ 1469 (1496)
+++
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=367.81 Aligned_cols=223 Identities=25% Similarity=0.443 Sum_probs=190.0
Q ss_pred CcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCeeCCC--C
Q 039402 1242 SHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISL--I 1314 (1496)
Q Consensus 1242 ~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i 1314 (1496)
..-.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 21 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 21 KKVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred CceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 3346999999999964 359999999999999999999999999999999999987 699999999999854 3
Q ss_pred ChHHHhcccEEEcccccccccchhhccCC---CCCCc-----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch
Q 039402 1315 GLHDLRSRLSIIPQDPVMFEGTVRSNLDP---LEEST-----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1386 (1496)
Q Consensus 1315 ~l~~LR~~i~iIpQdp~LF~gTIR~NLdp---~~~~s-----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~G 1386 (1496)
....+|++++|+||+|.+|.+|+++|+.. ..+.+ ++.+.++++..++.+.+. ......+.+||+|
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgG 171 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGG 171 (271)
T ss_pred cHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHH
Confidence 55678899999999999999999999963 11222 223456676666543332 2234556789999
Q ss_pred HHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChh
Q 039402 1387 QRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPA 1465 (1496)
Q Consensus 1387 QrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~ 1465 (1496)
||||++|||||+++|+||||||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778999999999999876 9999999999999999999
Q ss_pred hHhhcCCc
Q 039402 1466 NLLENKSS 1473 (1496)
Q Consensus 1466 ~Ll~~~~s 1473 (1496)
++.+++..
T Consensus 252 ~~~~~~~~ 259 (271)
T PRK14238 252 KIFSNPSD 259 (271)
T ss_pred HHHcCCCC
Confidence 99876543
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=364.01 Aligned_cols=218 Identities=24% Similarity=0.397 Sum_probs=189.3
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCeeCCCC--ChH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISLI--GLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1317 (1496)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999964 4599999999999999999999999999999999999875 799999999999753 345
Q ss_pred HHhcccEEEcccccccccchhhccCCCC---CC-c----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1318 DLRSRLSIIPQDPVMFEGTVRSNLDPLE---ES-T----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~-s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
.+|++++|+||+|.+|..|+++|+.... .. + ++++.++++.+++.+.+... .......||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD-------LKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH-------hhCCcccCCHHHHH
Confidence 6789999999999999999999996321 11 1 24567888888886544321 23345689999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
|++||||++++|+||+|||||++||+.+...+.+.|++..++.|+|+|||+++.+.. ||||++|++|++++.|++++++
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988777899999999999876 9999999999999999999998
Q ss_pred hcC
Q 039402 1469 ENK 1471 (1496)
Q Consensus 1469 ~~~ 1471 (1496)
.++
T Consensus 235 ~~~ 237 (251)
T PRK14270 235 LEP 237 (251)
T ss_pred cCC
Confidence 654
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=368.75 Aligned_cols=215 Identities=24% Similarity=0.418 Sum_probs=188.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++|++++|+...+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 59999999999754446999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccccc--ccccchhhccCCC---CCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1325 IIPQDPV--MFEGTVRSNLDPL---EES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1325 iIpQdp~--LF~gTIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
++||+|. ++..|+++|+... ... .++++.++++..++.+.... ...+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHH
Confidence 9999994 4456899998532 111 23456778888887654432 34579999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhc
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
|++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+..||||++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998653 6899999999999988999999999999999999999764
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=367.06 Aligned_cols=222 Identities=24% Similarity=0.386 Sum_probs=193.1
Q ss_pred CCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCeeCC---
Q 039402 1241 PSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDIS--- 1312 (1496)
Q Consensus 1241 p~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~--- 1312 (1496)
|..+.|+++|++++|+. +++|+|+||+|++||++||+|++|||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 12 ~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 56788999999999964 3599999999999999999999999999999999999875 7999999998874
Q ss_pred -CCChHHHhcccEEEcccccccccchhhccCCCC--------CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCC
Q 039402 1313 -LIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE--------ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1383 (1496)
Q Consensus 1313 -~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~--------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1383 (1496)
....+.+|++++++||+|.+|.+|+++|+.... +..++++.++++.+++.+.+. ........+|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccC
Confidence 234567889999999999999999999996321 123467788898888765332 2234456789
Q ss_pred CchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEec
Q 039402 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1384 S~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g 1462 (1496)
|+|||||++||||++++|++++|||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987767899999999999975 9999999999999999
Q ss_pred ChhhHhhcC
Q 039402 1463 NPANLLENK 1471 (1496)
Q Consensus 1463 ~p~~Ll~~~ 1471 (1496)
+++++..++
T Consensus 243 ~~~~~~~~~ 251 (265)
T PRK14252 243 ATDTIFIKP 251 (265)
T ss_pred CHHHHHhCC
Confidence 999998654
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=357.20 Aligned_cols=211 Identities=21% Similarity=0.345 Sum_probs=187.8
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCCh----HHHhc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL----HDLRS 1321 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l----~~LR~ 1321 (1496)
+.+.|+.++|+++ .++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+. ...|+
T Consensus 1 ~~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 1 VQVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred CeeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 3578999999766 469999999999999999999999999999999999999999999999998876542 34577
Q ss_pred ccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 039402 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS 1401 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~ 1401 (1496)
.++++||+|.+|+.|+++|+.....+++++..++++.+++.+.+...|.|+++.+.....+||+|||||++||||++++|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 89999999999999999999865445667788899999999989889999999998889999999999999999999999
Q ss_pred CEEEEEcCCCCCCHHHHHHHHH--HHHHhc-CCcEEEEEccCcchhcccCEEEEEeCCe
Q 039402 1402 KILMLDEATASVDTATDNLIQQ--TLRQHF-SDCTVLTIAHRITSVIDSDLVLLLNHGL 1457 (1496)
Q Consensus 1402 ~ILiLDEaTsslD~~Td~~Iq~--~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL~~G~ 1457 (1496)
+||||||||++||+.+.+.+.+ .++... .+.|+|+++|+.+.+..||+|++|++|+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999887776 444332 3689999999999999999999999984
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=356.08 Aligned_cols=202 Identities=27% Similarity=0.396 Sum_probs=179.0
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|.. .++|+|+||++++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++... .++|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999953 4699999999999999999999999999999999999999999999999998764 567889999
Q ss_pred Eccccccc-ccchhhccCCC---CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 039402 1326 IPQDPVMF-EGTVRSNLDPL---EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS 1401 (1496)
Q Consensus 1326 IpQdp~LF-~gTIR~NLdp~---~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~ 1401 (1496)
+||++.+| ..|+++|+... ...+++++.++++..++.+...+. ...||+|||||++||||++++|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 99999887 46999999632 123567788899999987665443 3568999999999999999999
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEec
Q 039402 1402 KILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1402 ~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g 1462 (1496)
++|+|||||++||+.+.+.+.+.|++.. .++|+|+++|+++.+.. ||+|++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998764 47899999999999876 9999999999999865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=368.06 Aligned_cols=223 Identities=22% Similarity=0.344 Sum_probs=190.3
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH---HHhc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH---DLRS 1321 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR~ 1321 (1496)
.|+++||+++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5999999999963 3599999999999999999999999999999999999999999999999999876643 4578
Q ss_pred ccEEEccccccccc-chhhccCC----CCCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1322 RLSIIPQDPVMFEG-TVRSNLDP----LEEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~g-TIR~NLdp----~~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
+++++||++.+|.+ |+++|+.. ....+ ++++.++++..++.+..... ..+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM-----------PSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999987 99999963 11122 23466678888775543332 3579999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
||||++++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|+++++++
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998643 6899999999999876 99999999999999999999987
Q ss_pred cCCcHHHHHHH
Q 039402 1470 NKSSSFSQLVA 1480 (1496)
Q Consensus 1470 ~~~s~F~~l~~ 1480 (1496)
+++.....++.
T Consensus 234 ~~~~~~~~~~~ 244 (269)
T PRK11831 234 NPDPRVRQFLD 244 (269)
T ss_pred CCcHHHHHHHH
Confidence 65444455543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=372.92 Aligned_cols=203 Identities=33% Similarity=0.446 Sum_probs=176.5
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eE
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 684 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~ 684 (1496)
..++++|++.+|. +..+++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.++|+ ++
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4689999999996 578999999999999999999999999999999999999999999999995 49
Q ss_pred EEccCCccCC-CcHHHHhccCCCC----C-H---HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHH
Q 039402 685 YVAQSPWIQS-GKIEDNILFGKEM----N-R---ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 755 (1496)
Q Consensus 685 yv~Q~~~i~~-~ti~eNI~~g~~~----~-~---~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR 755 (1496)
+|+|+.-+|. .||+|||.||... . + +++.++++..+|.+. -.+++.+|||||||||||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~-----------~~R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGF-----------ADRKPHQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhh-----------hhhChhhhChHHHHHHHHHH
Confidence 9999999985 5999999999762 2 2 245555555555442 24678999999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCc-cccCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 756 ALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 756 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
||..+|+++|||||+||||.+.+.++-.++.+... .|.|.|+||||.++ +..+|||.+|++|+|.+.|+++|+....
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999988777655443 38999999999977 5669999999999999999999997654
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=368.50 Aligned_cols=213 Identities=27% Similarity=0.413 Sum_probs=186.3
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC-hHHHhcccE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG-LHDLRSRLS 1324 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~-l~~LR~~i~ 1324 (1496)
++++|++++|+++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999643 35999999999999999999999999999999999999999999999999998775 467889999
Q ss_pred EEccccc--ccccchhhccCCCC---CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1325 IIPQDPV--MFEGTVRSNLDPLE---EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1325 iIpQdp~--LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
++||+|. ++..|+++|+.... ..+ ++++.++++..++.+..... ...||+|||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS-----------PKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------cccCCHHHHHHHHHHH
Confidence 9999985 56789999996421 122 34567778888876554333 3579999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhc
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
||+++|+||+|||||++||+.+...+.+.|++.. +++|||+++|+++.+..||+|++|++|++++.|+++++...
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998764 47899999999999988999999999999999999998754
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=357.18 Aligned_cols=202 Identities=31% Similarity=0.445 Sum_probs=178.6
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|+. .++|+|+||+|++| ++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|+++++
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 579999999964 35999999999999 99999999999999999999999999999999999998776 778999999
Q ss_pred Eccccccccc-chhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1326 IPQDPVMFEG-TVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+||+|.+|.+ |+++|+... ...+ ++++.++++.+++.+..... ..+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKK-----------IGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCc-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999986 999998631 1111 34678889998886553322 256999999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEec
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g 1462 (1496)
+++|++|+|||||++||+.+.+.+.+.|++..+++|+|+|+|+++.+.. ||||++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999988777999999999999975 9999999999999865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=346.25 Aligned_cols=221 Identities=28% Similarity=0.381 Sum_probs=186.2
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.+++++|+..|.. ..||+||||+|++||.|+||||||||||||++++.|+..|++|+|.+||.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 5899999999976 4699999999999999999999999999999999999999999999999887433 46799
Q ss_pred EEccccccccc-chhhccCC-CCC--C----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVMFEG-TVRSNLDP-LEE--S----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp-~~~--~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
||+|++.||+- ||++|+.. ... . ..+.+.+.|+++||.++-.+.|. .||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHH
Confidence 99999999998 99999963 221 1 23468889999999999888875 569999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeC--CeE---eEecChhhHh
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNH--GLI---EEFDNPANLL 1468 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~--G~I---vE~g~p~~Ll 1468 (1496)
|+.+|+||+||||.++||..|...+|+-+.+.- .++||++|||+++.... +|||+||.+ |+| ++.+-|..-
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i~l~rpR- 223 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPR- 223 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEecCCCCCc-
Confidence 999999999999999999999999999888755 35899999999988655 999999999 545 333333221
Q ss_pred hcCCcHHHHHHHHHhh
Q 039402 1469 ENKSSSFSQLVAEYTL 1484 (1496)
Q Consensus 1469 ~~~~s~F~~l~~~~~~ 1484 (1496)
...+..|..+.++-+.
T Consensus 224 ~~~~~~f~~l~~~i~~ 239 (248)
T COG1116 224 IRGDPEFLELREELLE 239 (248)
T ss_pred cccChHHHHHHHHHHH
Confidence 2345668777766554
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=360.71 Aligned_cols=211 Identities=28% Similarity=0.428 Sum_probs=186.7
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|+. .++++|+||+|++||++||+|++|||||||+++|+|+++|.+|+|++||.++...+. .++.+++
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 578999999974 359999999999999999999999999999999999999999999999999987654 3678999
Q ss_pred Eccccccccc-chhhccCCC-------CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1326 IPQDPVMFEG-TVRSNLDPL-------EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp~-------~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+||+|.+|.+ |+++|+... ....++++.++++..++.+.....+ .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999976 999999621 1122456788888888877665544 47899999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcC
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~ 1471 (1496)
+++|++|||||||+++|..+.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 999999999999999999999999999998653 7899999999999876 9999999999999999999998654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=325.69 Aligned_cols=211 Identities=30% Similarity=0.465 Sum_probs=187.1
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|.+++|.++|.. .|. ..+++|++||+|||+|+||||||||++++.|+..|.+|+|.|+|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~-~~~---~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGH-LPM---RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCc-ceE---EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 567899999964 343 57899999999999999999999999999999999999999999999877654 456999
Q ss_pred Eccccccccc-chhhccC----CCCC---CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1326 IPQDPVMFEG-TVRSNLD----PLEE---STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLd----p~~~---~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+.||.-||.- ||++|+. |.-. ...+.+..++.++|+.++...+|+ .||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHH
Confidence 9999999976 9999997 3222 234668999999999999999986 4699999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCc
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s 1473 (1496)
+|+.+||+||||.|+||+.-.+.+...+.+.. ++.|+++|||.++.+.. +|+++++|+|||+..|+-++++..++.
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~~ 223 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCCh
Confidence 99999999999999999999999888887765 46799999999999876 999999999999999999999976543
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=362.31 Aligned_cols=214 Identities=23% Similarity=0.335 Sum_probs=183.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCC------CCChHH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS------LIGLHD 1318 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~------~i~l~~ 1318 (1496)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ......
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 3789999999964 35999999999999999999999999999999999999999999999999874 123456
Q ss_pred HhcccEEEccccccccc-chhhccCC--C--CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1319 LRSRLSIIPQDPVMFEG-TVRSNLDP--L--EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1319 LR~~i~iIpQdp~LF~g-TIR~NLdp--~--~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
+|++++++||+|.+|.+ |+++|+.. . ...+ .+++.++++..++.+.....+ .+||+||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP-----------LHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHH
Confidence 78899999999999976 99999962 1 1111 234566777777765544433 578999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhH
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
|++||||++++|+||||||||++||+++...+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999999864 37899999999999976 999999999999999999988
Q ss_pred hhcC
Q 039402 1468 LENK 1471 (1496)
Q Consensus 1468 l~~~ 1471 (1496)
.+.+
T Consensus 229 ~~~~ 232 (242)
T PRK11124 229 TQPQ 232 (242)
T ss_pred cCcc
Confidence 6543
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=369.31 Aligned_cols=215 Identities=24% Similarity=0.395 Sum_probs=189.5
Q ss_pred eEEEEeEEeEeCCC----CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC-hHHH
Q 039402 1245 KIDLLDLQVRYAPQ----MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG-LHDL 1319 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~----~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~-l~~L 1319 (1496)
-|+++|++++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 58999999999743 246999999999999999999999999999999999999999999999999997654 4668
Q ss_pred hcccEEEccccc--ccccchhhccCCCC---CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 039402 1320 RSRLSIIPQDPV--MFEGTVRSNLDPLE---EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1390 (1496)
Q Consensus 1320 R~~i~iIpQdp~--LF~gTIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQl 1390 (1496)
|++++++||+|. +|..|+++|+.... ..+ ++++.++++.+++.+...+.| ..||+|||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 67679999996321 112 456788899999977665544 4789999999
Q ss_pred HHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHh
Q 039402 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1391 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
++|||||+++|++|||||||++||+.+...+.+.|++.- .++|||+|+|+++.+..||+|++|++|++++.|+|+++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999864 378999999999999889999999999999999999997
Q ss_pred hc
Q 039402 1469 EN 1470 (1496)
Q Consensus 1469 ~~ 1470 (1496)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=365.19 Aligned_cols=219 Identities=22% Similarity=0.435 Sum_probs=189.7
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCeeCCC--CChH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISL--IGLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1317 (1496)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 5999999999964 359999999999999999999999999999999999986 479999999999853 4556
Q ss_pred HHhcccEEEcccccccccchhhccCCCC---CC---cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 039402 1318 DLRSRLSIIPQDPVMFEGTVRSNLDPLE---ES---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1391 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~---sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll 1391 (1496)
.+|++++++||+|.+|..|+++|+.... .. .++++.++++.+++.+.+... ....+.+||+|||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK-------LKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH-------hcCCcccCCHHHHHHH
Confidence 7889999999999999899999996421 11 234566778888886655321 2345678999999999
Q ss_pred HHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEe---------CCeEeEe
Q 039402 1392 CLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLN---------HGLIEEF 1461 (1496)
Q Consensus 1392 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~---------~G~IvE~ 1461 (1496)
+||||++++|+||||||||++||+.+...+.+.|++..+++|||+++|+++.+.. ||||++|+ +|+|++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999988777899999999999876 99999998 8999999
Q ss_pred cChhhHhhcCC
Q 039402 1462 DNPANLLENKS 1472 (1496)
Q Consensus 1462 g~p~~Ll~~~~ 1472 (1496)
|+++++.+++.
T Consensus 241 ~~~~~~~~~~~ 251 (264)
T PRK14243 241 DRTEKIFNSPQ 251 (264)
T ss_pred CCHHHHHhCCC
Confidence 99999987654
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=357.42 Aligned_cols=203 Identities=27% Similarity=0.419 Sum_probs=175.4
Q ss_pred EEEEeEEeEeCCCC--CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH---Hh
Q 039402 1246 IDLLDLQVRYAPQM--PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---LR 1320 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~--~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR 1320 (1496)
|+++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996432 35999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -cccEEEcccccccc-cchhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 039402 1321 -SRLSIIPQDPVMFE-GTVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1391 (1496)
Q Consensus 1321 -~~i~iIpQdp~LF~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll 1391 (1496)
++++++||+|.+|. .|+++|+... ...+ ++++.++++..++.+..... ...||+|||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHR-----------PSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHH
Confidence 67999999999986 5999999631 1121 23567778887776544332 357999999999
Q ss_pred HHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcccCEEEEEeCCeEe
Q 039402 1392 CLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVIDSDLVLLLNHGLIE 1459 (1496)
Q Consensus 1392 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~~DrIlVL~~G~Iv 1459 (1496)
+||||++++|+||||||||++||+.+...+.+.|++.. .++|||+|+|+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999764 368999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=361.99 Aligned_cols=213 Identities=24% Similarity=0.390 Sum_probs=184.1
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC--hHHHhccc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG--LHDLRSRL 1323 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~--l~~LR~~i 1323 (1496)
++++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999964 45999999999999999999999999999999999999999999999999998643 45678899
Q ss_pred EEEcccccccc-cchhhccCCCC----CC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1324 SIIPQDPVMFE-GTVRSNLDPLE----ES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1324 ~iIpQdp~LF~-gTIR~NLdp~~----~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
+++||++.+|. .|+++|+.... .. .++++.++++..++.+.... ....||+|||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH-----------YPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-----------ChhhcCHHHHHHHHHH
Confidence 99999999886 59999996321 11 12345667777776544433 3357999999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcC
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~ 1471 (1496)
||++++|++|+|||||++||+++...+.+.|++.. +++|+|+|+|+++.+.. ||+|++|++|++++.|++.++++++
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 99999999999999999999999999999998764 47899999999999965 9999999999999999999998654
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=353.63 Aligned_cols=202 Identities=31% Similarity=0.419 Sum_probs=171.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.|.+++.+..|+ ..++++|||++|+.||.+|+.|||||||||||++|+|+..|++|+|.++|+
T Consensus 2 ~i~i~~~~~~~~---~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhcc---cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 366777777775 467999999999999999999999999999999999999999999999996
Q ss_pred eEEEccCCccC-CCcHHHHhccCCCC---------CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 683 KAYVAQSPWIQ-SGKIEDNILFGKEM---------NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 683 ~~yv~Q~~~i~-~~ti~eNI~~g~~~---------~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
+|||+|+.-+| ..||.|||.||.+. .+.+..+.++.|+|+..- ...+.+||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la-----------~ryP~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA-----------DRYPAQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchh-----------hcCchhcChHHHHHHH
Confidence 59999999887 56999999999732 234555567777765432 3566899999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
|||||..+|++|||||||+|||++..+.+-+.+.+-..+ |.|+++||||.++.- .||+|++|++|+|.+.|+++|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999988885544433334 899999999998865 599999999999999999999975
Q ss_pred cC
Q 039402 831 SG 832 (1496)
Q Consensus 831 ~~ 832 (1496)
..
T Consensus 228 ~P 229 (345)
T COG1118 228 HP 229 (345)
T ss_pred CC
Confidence 43
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=367.24 Aligned_cols=212 Identities=27% Similarity=0.399 Sum_probs=188.3
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+..++|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999964 35999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccccccccc-chhhccCCCC-----------CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPLE-----------ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~~-----------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
++||++.++.+ |+++|+.... ...++++.++++.+++.+.....+ .+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHHH
Confidence 99999877665 9999996310 112456888999999866544433 368999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
||||++.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 99999999999999999999999999999999988642 7899999999999965 99999999999999999999874
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=365.03 Aligned_cols=225 Identities=28% Similarity=0.380 Sum_probs=188.1
Q ss_pred eEEEEeEEeEeCCC-------CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH
Q 039402 1245 KIDLLDLQVRYAPQ-------MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~-------~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~ 1317 (1496)
.|+++||+++|++. ...+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999642 34699999999999999999999999999999999999999999999999999887654
Q ss_pred H---HhcccEEEccccc--cc-ccchhhccCC----CCC----CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCC
Q 039402 1318 D---LRSRLSIIPQDPV--MF-EGTVRSNLDP----LEE----STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1383 (1496)
Q Consensus 1318 ~---LR~~i~iIpQdp~--LF-~gTIR~NLdp----~~~----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1383 (1496)
+ +|++++++||+|. ++ ..|+++|+.. ... ..++++.++++..++.+.. ......+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED----------ADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh----------hhCChhhC
Confidence 3 6788999999983 44 3699999841 111 2234677788888774321 12344679
Q ss_pred CchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeE
Q 039402 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEE 1460 (1496)
Q Consensus 1384 S~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE 1460 (1496)
|+|||||++||||++.+|+||||||||++||+.+...+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999998653 7899999999999975 99999999999999
Q ss_pred ecChhhHhhcCCcHHHHHH
Q 039402 1461 FDNPANLLENKSSSFSQLV 1479 (1496)
Q Consensus 1461 ~g~p~~Ll~~~~s~F~~l~ 1479 (1496)
.|+++++++.++...+.+.
T Consensus 232 ~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 232 ECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred ECCHHHHcCCCCHHHHHHH
Confidence 9999999875433333343
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=362.76 Aligned_cols=215 Identities=27% Similarity=0.400 Sum_probs=184.7
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC--------h
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG--------L 1316 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~--------l 1316 (1496)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 3899999999964 35999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcccEEEcccccccc-cchhhccCCC----CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1317 HDLRSRLSIIPQDPVMFE-GTVRSNLDPL----EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1317 ~~LR~~i~iIpQdp~LF~-gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
..+|++++++||+|.+|. .|+++|+... .... ++.+.++++..++.+.. .....+||+||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE-----------TSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----------hCChhhCChHH
Confidence 467889999999999886 6999999631 1112 23456677777765432 23456899999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChh
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS-DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPA 1465 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~-~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~ 1465 (1496)
|||++||||++++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.+ ||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999988653 7899999999999976 9999999999999999999
Q ss_pred hHhhcCC
Q 039402 1466 NLLENKS 1472 (1496)
Q Consensus 1466 ~Ll~~~~ 1472 (1496)
++++.+.
T Consensus 230 ~~~~~~~ 236 (250)
T PRK11264 230 ALFADPQ 236 (250)
T ss_pred HHhcCCC
Confidence 9986543
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=362.55 Aligned_cols=224 Identities=24% Similarity=0.415 Sum_probs=191.7
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCeeCCCC--ChH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISLI--GLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1317 (1496)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 5999999999963 3599999999999999999999999999999999999763 489999999999876 456
Q ss_pred HHhcccEEEcccccccccchhhccCCCC---C-----CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1318 DLRSRLSIIPQDPVMFEGTVRSNLDPLE---E-----STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~-----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
+.|++++++||+|.+|++|+++|+.... . ..++.+.++++.+++.+.+. ......+.+||+||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHHH
Confidence 7888999999999999999999997321 1 11345677788887754433 2234556789999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
|++||||++.+|++++|||||++||+.+.+.+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999987777999999999999975 9999999999999999999998
Q ss_pred hcCCcHHHH
Q 039402 1469 ENKSSSFSQ 1477 (1496)
Q Consensus 1469 ~~~~s~F~~ 1477 (1496)
+++...+.+
T Consensus 237 ~~~~~~~~~ 245 (253)
T PRK14261 237 ENPHEELTE 245 (253)
T ss_pred hCCCcHHHH
Confidence 655433333
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=363.89 Aligned_cols=222 Identities=25% Similarity=0.413 Sum_probs=191.4
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-----ccEEEECCeeCCC--CCh
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA-----AGQILIDGIDISL--IGL 1316 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~-----~G~I~IDG~dI~~--i~l 1316 (1496)
+.|+++|++++|+. +.+|+|+||+|++||.+||+|++|||||||+++|.|+++|+ +|+|.+||.|++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 47999999999964 35999999999999999999999999999999999999985 8999999999853 345
Q ss_pred HHHhcccEEEcccccccccchhhccCCC----CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 039402 1317 HDLRSRLSIIPQDPVMFEGTVRSNLDPL----EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1317 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
..+|+.++++||++.+|..|+++|+... +..+ ++++.++++.+++.+++..+ .......||+|||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-------IHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHHH
Confidence 6788999999999999999999999631 1112 34567788888887655432 2345678999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeC-----CeEeE
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNH-----GLIEE 1460 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~-----G~IvE 1460 (1496)
||++||||++++|++|||||||+++|+++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999999743 47999999999999876 999999999 99999
Q ss_pred ecChhhHhhcCCcH
Q 039402 1461 FDNPANLLENKSSS 1474 (1496)
Q Consensus 1461 ~g~p~~Ll~~~~s~ 1474 (1496)
.|+|+++.+++...
T Consensus 237 ~~~~~~~~~~~~~~ 250 (261)
T PRK14258 237 FGLTKKIFNSPHDS 250 (261)
T ss_pred eCCHHHHHhCCCCH
Confidence 99999998766553
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=362.64 Aligned_cols=220 Identities=22% Similarity=0.352 Sum_probs=192.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCeeCCCC--ChH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISLI--GLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1317 (1496)
.+.+++.+++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4889999999964 3599999999999999999999999999999999999986 799999999998753 444
Q ss_pred HHhcccEEEcccccccccchhhccCCCC------CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 039402 1318 DLRSRLSIIPQDPVMFEGTVRSNLDPLE------ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1391 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll 1391 (1496)
.+|++++++||+|.+|..|+++|+.... ...++++.++++.+++.+.+... ..+...+||+|||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-------hhCCcccCCHHHHHHH
Confidence 6788999999999999999999997421 11235688899999987655432 2345678999999999
Q ss_pred HHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEe--------CCeEeEec
Q 039402 1392 CLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLN--------HGLIEEFD 1462 (1496)
Q Consensus 1392 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~--------~G~IvE~g 1462 (1496)
+||||++++|+||+|||||++||+.+...+.+.|++..+++|+|+|+|+++.+.+ ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999988777899999999999876 99999996 89999999
Q ss_pred ChhhHhhcCCc
Q 039402 1463 NPANLLENKSS 1473 (1496)
Q Consensus 1463 ~p~~Ll~~~~s 1473 (1496)
+++++++++..
T Consensus 239 ~~~~~~~~~~~ 249 (261)
T PRK14263 239 PTAQIFQNPRE 249 (261)
T ss_pred CHHHHHhCCCc
Confidence 99999876543
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=360.73 Aligned_cols=211 Identities=27% Similarity=0.446 Sum_probs=181.6
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHH-hcccE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-RSRLS 1324 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i~ 1324 (1496)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999964 359999999999999999999999999999999999999999999999999988776654 57899
Q ss_pred EEccccccccc-chhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
++||+|.+|.+ |+++|+... .... ++++.+.++..++.+. ......+||+|||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL-----------RKSKASSLSGGERRRVEIARA 147 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHHH
Confidence 99999999987 999999631 1112 2234556666665433 233446799999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
++++|++|+|||||++||+++.+.+.+.|++.. .++|+|+++|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999999998765 47899999999987766 99999999999999999999874
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=356.36 Aligned_cols=200 Identities=31% Similarity=0.458 Sum_probs=174.2
Q ss_pred EEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEE
Q 039402 1247 DLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSII 1326 (1496)
Q Consensus 1247 ~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iI 1326 (1496)
+++|++++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 47899999975334699999999999999999999999999999999999999999999999999888888889999999
Q ss_pred cccc--cccccchhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1327 PQDP--VMFEGTVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1327 pQdp--~LF~gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
||+| .++..|+++|+... ...+ ++++.++++..++.+...+. ...||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRS-----------PFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCC-----------cccCCHHHHHHHHHHHHH
Confidence 9998 36788999999642 1122 23566778888776544332 357999999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCe
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGL 1457 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ 1457 (1496)
+++|++|||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999998865 37899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=373.91 Aligned_cols=227 Identities=25% Similarity=0.373 Sum_probs=189.3
Q ss_pred eEEEEeEEeEeCC--CCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCC---ccEEEECCeeCCCCChHHH
Q 039402 1245 KIDLLDLQVRYAP--QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA---AGQILIDGIDISLIGLHDL 1319 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~--~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~---~G~I~IDG~dI~~i~l~~L 1319 (1496)
.++++|++++|+. +...+|+||||+|++||++||||+||||||||+++|+|+++|. +|+|.+||.|+..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 6999999999963 2246999999999999999999999999999999999999996 9999999999999987765
Q ss_pred h----cccEEEcccc--cccc-cchhhccC----CCCCCcH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCC
Q 039402 1320 R----SRLSIIPQDP--VMFE-GTVRSNLD----PLEESTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWS 1384 (1496)
Q Consensus 1320 R----~~i~iIpQdp--~LF~-gTIR~NLd----p~~~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1384 (1496)
| ++|++||||| .++. -|+.+|+. .....+. +++.+.|+.+++.+ +. ..+......||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~-------~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE-------AR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-------hH-HHhcCCcccCC
Confidence 4 4799999999 4554 37777662 2222222 34566777777642 11 11344567899
Q ss_pred chHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEe
Q 039402 1385 MGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEF 1461 (1496)
Q Consensus 1385 ~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~ 1461 (1496)
||||||++|||||+.+|++||+||||++||..+...|.+.|++.-+ +.|+|+|||+++.+.. ||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999987654 7899999999999975 999999999999999
Q ss_pred cChhhHhhcCCcHHHHHH
Q 039402 1462 DNPANLLENKSSSFSQLV 1479 (1496)
Q Consensus 1462 g~p~~Ll~~~~s~F~~l~ 1479 (1496)
|+++++++++...|.+..
T Consensus 244 g~~~~i~~~p~~pyt~~l 261 (330)
T PRK09473 244 GNARDVFYQPSHPYSIGL 261 (330)
T ss_pred CCHHHHHhCCCCHHHHHH
Confidence 999999988766665533
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=364.59 Aligned_cols=211 Identities=25% Similarity=0.439 Sum_probs=187.4
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..++++.+++
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999988888888899999
Q ss_pred Eccccccccc-chhhccCCC--------CC---CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH
Q 039402 1326 IPQDPVMFEG-TVRSNLDPL--------EE---STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1393 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp~--------~~---~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~L 1393 (1496)
+||++.+|.+ |+++|++.. +. ..++++.++++.+++.+.... ....||+|||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHHHH
Confidence 9999998877 999999742 11 123457788888888654433 235789999999999
Q ss_pred HHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1394 GRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1394 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
|||++++|++|||||||++||+++.+.+.+.|++.. +++|||+++|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999998864 47899999999999875 99999999999999999999874
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=356.26 Aligned_cols=201 Identities=26% Similarity=0.380 Sum_probs=175.3
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCCh---HHHhcc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL---HDLRSR 1322 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l---~~LR~~ 1322 (1496)
|+++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 459999999999999999999999999999999999999999999999999987754 357889
Q ss_pred cEEEccccccccc-chhhccCCC---CCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1323 LSIIPQDPVMFEG-TVRSNLDPL---EES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1323 i~iIpQdp~LF~g-TIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
++++||+|.+|.+ |+++|+... ... .++++.++++.+++.+.....+ .+||+|||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHHH
Confidence 9999999999985 999999632 111 2346778888888866544333 47899999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeE
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLI 1458 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~I 1458 (1496)
||++++|+|++|||||++||+.+.+.+.+.|++.- +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999863 47999999999999986 899999999975
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=358.09 Aligned_cols=203 Identities=27% Similarity=0.342 Sum_probs=176.7
Q ss_pred EEEEeEEeEeCCCC--CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1246 IDLLDLQVRYAPQM--PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~--~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999996421 469999999999999999999999999999999999999999999999999863 46789
Q ss_pred EEEcccccccc-cchhhccCCC-C--C----CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1324 SIIPQDPVMFE-GTVRSNLDPL-E--E----STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1324 ~iIpQdp~LF~-gTIR~NLdp~-~--~----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
+++||+|.+|. .|+++|+... . . ..++++.+++++.++.+...+.+ .+||+|||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999987 6999999631 1 1 12456788899988876555443 468999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEe--CCeEeEecCh
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLN--HGLIEEFDNP 1464 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~--~G~IvE~g~p 1464 (1496)
||+++|++|||||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+.+ ||+|++|+ +|+++|.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999864 37899999999998865 99999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=342.67 Aligned_cols=172 Identities=32% Similarity=0.573 Sum_probs=162.7
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|+....++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999997544469999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEE
Q 039402 1326 IPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILM 1405 (1496)
Q Consensus 1326 IpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILi 1405 (1496)
+||+|.+|++|+++|+ ||+|||||++||||++++|++|+
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 89999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEEeCCeE
Q 039402 1406 LDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLLNHGLI 1458 (1496)
Q Consensus 1406 LDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL~~G~I 1458 (1496)
|||||++||+.+...+.+.|++.. +++|+|+++|+++.+..||+|++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998864 47899999999999988999999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=364.55 Aligned_cols=219 Identities=27% Similarity=0.422 Sum_probs=189.1
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCeeCCCCC-hHH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISLIG-LHD 1318 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i~-l~~ 1318 (1496)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 6899999999964 3599999999999999999999999999999999999986 6999999999998763 456
Q ss_pred HhcccEEEcccccccccchhhccCCC----CCCcHHHH----HHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 039402 1319 LRSRLSIIPQDPVMFEGTVRSNLDPL----EESTDEQI----WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1390 (1496)
Q Consensus 1319 LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~sd~eI----~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQl 1390 (1496)
+|++++|+||+|.+|..|+++|+... ...+++++ .+.++.+++.+.+. +.......+||+|||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVK-------DRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhCCcccCCHHHHHH
Confidence 78999999999999999999999632 12344443 45567777654321 22345567899999999
Q ss_pred HHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1391 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
++|||||+++|+||||||||++||..+.+.+.+.|++..+++|||+|+|+++.+.+ ||||++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667999999999999876 99999999999999999999987
Q ss_pred cCC
Q 039402 1470 NKS 1472 (1496)
Q Consensus 1470 ~~~ 1472 (1496)
.+.
T Consensus 252 ~~~ 254 (276)
T PRK14271 252 SPK 254 (276)
T ss_pred CcC
Confidence 643
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=355.83 Aligned_cols=202 Identities=23% Similarity=0.414 Sum_probs=175.8
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ++++++
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 578999999964 3599999999999999999999999999999999999999999999999999766543 568999
Q ss_pred Ecccccccc-cchhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1326 IPQDPVMFE-GTVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1326 IpQdp~LF~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+||++.+|. .|+++|+... ...+ ++++.+++++.++.+.....+ ..||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999885 5999999642 1122 335667788888866544433 57899999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEec
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g 1462 (1496)
+++|++|+|||||++||+.+...+.+.|++.. .++|||+|+|+++.+.+ ||+|++|++|+++++|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999864 37899999999999876 9999999999999986
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=363.23 Aligned_cols=219 Identities=26% Similarity=0.456 Sum_probs=187.2
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCeeCCC--CChH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISL--IGLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l~ 1317 (1496)
.++++|++++|+.. ++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 48999999999643 599999999999999999999999999999999999974 69999999999864 4456
Q ss_pred HHhcccEEEcccccccc-cchhhccCC-C---CCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 039402 1318 DLRSRLSIIPQDPVMFE-GTVRSNLDP-L---EES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~-gTIR~NLdp-~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
.+|+.++++||++.+|. .|+++|+.. . +.. .++.+.++++.+++.+.+.. .......+||+|||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD-------RLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 78899999999999997 499999852 1 111 13456778888887544321 22344568999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEe------CCeEeEe
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLN------HGLIEEF 1461 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~------~G~IvE~ 1461 (1496)
||++||||++++|++|||||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||+|++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999987667899999999999865 99999997 8999999
Q ss_pred cChhhHhhcCC
Q 039402 1462 DNPANLLENKS 1472 (1496)
Q Consensus 1462 g~p~~Ll~~~~ 1472 (1496)
|+|+++++++.
T Consensus 235 ~~~~~~~~~~~ 245 (258)
T PRK14241 235 DDTEKIFSNPT 245 (258)
T ss_pred CCHHHHHhCcC
Confidence 99999986543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=344.51 Aligned_cols=193 Identities=30% Similarity=0.427 Sum_probs=158.4
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 618 LDIVDGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
++++|+...|.... ..++|+++||+|++||+++|+|||||||||||++|.|...|++|+|.++|.
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 46788888886432 247899999999999999999999999999999999999999999999983
Q ss_pred ---eEEEccCCccC-CCcHHHHhccCC----CCC---HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 683 ---KAYVAQSPWIQ-SGKIEDNILFGK----EMN---RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 683 ---~~yv~Q~~~i~-~~ti~eNI~~g~----~~~---~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
+|||+|+..+. +.|++|||.+.. ... .++.+..++..++.+.. ...++.+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~----------~~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRL----------LKKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhh----------ccCCchhcCHHHHHHH
Confidence 59999998875 569999999532 111 22333333433443222 1356789999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCccccCCEEEEEeCCeEE
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPAADLILVMKDGKIT 820 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 820 (1496)
||||||+.+|+++|.||||.+||.++++.+++.+..... .|+|+|+||||.+....|||++.|+||++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999865444433 489999999999999999999999999954
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=363.75 Aligned_cols=220 Identities=22% Similarity=0.403 Sum_probs=190.2
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCeeCCC--CCh
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDISL--IGL 1316 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l 1316 (1496)
-.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. ...
T Consensus 19 ~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 37999999999964 3599999999999999999999999999999999999863 59999999999864 344
Q ss_pred HHHhcccEEEcccccccccchhhccCCCC---C---CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 039402 1317 HDLRSRLSIIPQDPVMFEGTVRSNLDPLE---E---STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1390 (1496)
Q Consensus 1317 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~---~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQl 1390 (1496)
..+|++++|+||++.+|.+|+++|+.... . ..++++.++++.+++.+.+... .......||+|||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDK-------LKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHH-------hcCCcccCCHHHHHH
Confidence 56789999999999999999999996421 1 1245567788888886554321 234457899999999
Q ss_pred HHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEe---------CCeEeE
Q 039402 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLN---------HGLIEE 1460 (1496)
Q Consensus 1391 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~---------~G~IvE 1460 (1496)
++|||||+++|+||||||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||+|++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988778999999999999975 99999997 899999
Q ss_pred ecChhhHhhcCC
Q 039402 1461 FDNPANLLENKS 1472 (1496)
Q Consensus 1461 ~g~p~~Ll~~~~ 1472 (1496)
.|+++++..++.
T Consensus 250 ~g~~~~~~~~~~ 261 (274)
T PRK14265 250 FSPTEQMFGSPQ 261 (274)
T ss_pred eCCHHHHHhCCC
Confidence 999999986644
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=358.85 Aligned_cols=212 Identities=24% Similarity=0.363 Sum_probs=180.3
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH-Hhccc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-LRSRL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i 1323 (1496)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+ .|+++
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999998887655 67889
Q ss_pred EEEccccccccc-chhhccCCCCC-CcH----HHHHHHHHHc-CCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPLEE-STD----EQIWEALDKC-QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~~~-~sd----~eI~~aL~~~-~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
+++||++.+|.+ |+++|+..... .+. +++.++++.. ++.+ ........||+|||||++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHHHH
Confidence 999999999986 99999964211 122 2233334433 1211 1223456799999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
++++|+||+|||||++||+.+.+.+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999999998764 47999999999998765 99999999999999999999975
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=358.54 Aligned_cols=210 Identities=26% Similarity=0.428 Sum_probs=185.5
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|.. + +|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 578999999964 3 7999999999999999999999999999999999999999999999999987654 3789999
Q ss_pred Ecccccccc-cchhhccCC---CCCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1326 IPQDPVMFE-GTVRSNLDP---LEES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1326 IpQdp~LF~-gTIR~NLdp---~~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+||++.+|. .|+++|+.. .... .++++.++++.+++.+.+.+.+ .+||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999995 699999962 1111 2346788899999877655443 46899999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcC
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~ 1471 (1496)
+++|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|++++.|+++++.+.+
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 999999999999999999999999999998643 7999999999999886 9999999999999999999998754
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=367.60 Aligned_cols=215 Identities=26% Similarity=0.391 Sum_probs=183.6
Q ss_pred EEEEeEEeEeCCCC---CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC----ChHH
Q 039402 1246 IDLLDLQVRYAPQM---PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI----GLHD 1318 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~---~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~~ 1318 (1496)
|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ....
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997432 3599999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcccEEEcccc--cccccchhhccCCC---CCCcHH----HHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1319 LRSRLSIIPQDP--VMFEGTVRSNLDPL---EESTDE----QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1319 LR~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sd~----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
+|++|+|+||+| .+|++|+++|+... ...+++ .+.++++..++.+.. ......+||+||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL----------FEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHHH
Confidence 889999999998 68889999999631 112332 245566777765311 12334679999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhH
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
|++||||++++|++|||||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998864 37899999999999865 999999999999999999998
Q ss_pred hhc
Q 039402 1468 LEN 1470 (1496)
Q Consensus 1468 l~~ 1470 (1496)
+++
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 764
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=355.97 Aligned_cols=200 Identities=25% Similarity=0.375 Sum_probs=176.0
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH---HHhcc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH---DLRSR 1322 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR~~ 1322 (1496)
|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+..++.. .+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 4699999999999999999999999999999999999999999999999999887643 46889
Q ss_pred cEEEcccccccc-cchhhccCCC----C---CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1323 LSIIPQDPVMFE-GTVRSNLDPL----E---ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1323 i~iIpQdp~LF~-gTIR~NLdp~----~---~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
++++||+|.+|. .|+++|+... + +..+++++++++..++.+.....| .+||+|||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999986 5999998632 1 112457888999999876554443 47899999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCe
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGL 1457 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ 1457 (1496)
|||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999864 47999999999999987 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=360.12 Aligned_cols=219 Identities=25% Similarity=0.430 Sum_probs=189.3
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-----CccEEEECCeeCC-CCChHH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-----AAGQILIDGIDIS-LIGLHD 1318 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~-~i~l~~ 1318 (1496)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4899999999964 4599999999999999999999999999999999999986 5999999999986 455677
Q ss_pred HhcccEEEcccccccccchhhccCCC---CCC-c----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 039402 1319 LRSRLSIIPQDPVMFEGTVRSNLDPL---EES-T----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1390 (1496)
Q Consensus 1319 LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~-s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQl 1390 (1496)
+|+.++|+||+|.+|.+|+++|+... ... . ++++.++++.+++.+.+. .........||+|||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHHH
Confidence 89999999999999999999999632 111 1 234567788888765442 12234456899999999
Q ss_pred HHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1391 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
++||||++++|+||||||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999988777999999999999887 99999999999999999999876
Q ss_pred cCC
Q 039402 1470 NKS 1472 (1496)
Q Consensus 1470 ~~~ 1472 (1496)
++.
T Consensus 234 ~~~ 236 (249)
T PRK14253 234 NPK 236 (249)
T ss_pred CCC
Confidence 543
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=379.47 Aligned_cols=204 Identities=29% Similarity=0.437 Sum_probs=179.7
Q ss_pred ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHH----hcccEEEccccccccc-
Q 039402 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL----RSRLSIIPQDPVMFEG- 1335 (1496)
Q Consensus 1261 ~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L----R~~i~iIpQdp~LF~g- 1335 (1496)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.|+...+..++ |++++|+||++.+|..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998876654 3589999999999975
Q ss_pred chhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEc
Q 039402 1336 TVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDE 1408 (1496)
Q Consensus 1336 TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDE 1408 (1496)
|+++|+... ...+ ++++.++++.+++.+...+.| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999631 1112 356778899999987665554 4789999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCcHH
Q 039402 1409 ATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSF 1475 (1496)
Q Consensus 1409 aTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F 1475 (1496)
||++||+.+.+.+++.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|+|+++++++...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999998864 47899999999999865 99999999999999999999987665433
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=366.84 Aligned_cols=215 Identities=29% Similarity=0.433 Sum_probs=184.0
Q ss_pred eEEEEeEEeEeCCCC---CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC----ChH
Q 039402 1245 KIDLLDLQVRYAPQM---PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI----GLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~---~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~ 1317 (1496)
.|+++|++++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997432 3599999999999999999999999999999999999999999999999998754 245
Q ss_pred HHhcccEEEcccc--cccccchhhccCCC---CCCc----HHHHHHHHHHcCCc-HHHHhccCCcccccccCCCCCCchH
Q 039402 1318 DLRSRLSIIPQDP--VMFEGTVRSNLDPL---EEST----DEQIWEALDKCQLG-DEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp--~LF~gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
..|++++++||+| .+|..|+++|+... ...+ ++.+.++++.+++. +... ....+||+||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS-----------KSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhh-----------CCcccCCHHH
Confidence 6788999999998 58888999999521 1222 23456778888775 3322 2345799999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChh
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPA 1465 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~ 1465 (1496)
|||++|||||+++|++|||||||++||+.+...+.+.|++.. ++.|||+++|+++.+.. ||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999864 46899999999999865 9999999999999999999
Q ss_pred hHhhc
Q 039402 1466 NLLEN 1470 (1496)
Q Consensus 1466 ~Ll~~ 1470 (1496)
+++++
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 98753
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=369.17 Aligned_cols=218 Identities=24% Similarity=0.365 Sum_probs=183.4
Q ss_pred cceEEEEeEEeEeCCCC---CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC----C-
Q 039402 1243 HGKIDLLDLQVRYAPQM---PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL----I- 1314 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~---~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~----i- 1314 (1496)
.|.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. +
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 47899999999996532 259999999999999999999999999999999999999999999999999853 2
Q ss_pred ChHHHhcccEEEcccc--cccccchhhccCCCC---CCcHH----HHHHHHHHcCCcHHHHhccCCcccccccCCCCCCc
Q 039402 1315 GLHDLRSRLSIIPQDP--VMFEGTVRSNLDPLE---ESTDE----QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1385 (1496)
Q Consensus 1315 ~l~~LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sd~----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~ 1385 (1496)
+...+|++++++||+| .+|.+|+++|+.... ..+.+ .+.+.++..++.+. .......+||+
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~----------~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPED----------YVKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhcCChhhCCH
Confidence 3567888999999998 478889999996321 12222 34455666655211 12234567999
Q ss_pred hHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEec
Q 039402 1386 GQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1386 GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g 1462 (1496)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999988653 7899999999998865 9999999999999999
Q ss_pred ChhhHhhc
Q 039402 1463 NPANLLEN 1470 (1496)
Q Consensus 1463 ~p~~Ll~~ 1470 (1496)
++++++++
T Consensus 234 ~~~~~~~~ 241 (289)
T PRK13645 234 SPFEIFSN 241 (289)
T ss_pred CHHHHhcC
Confidence 99998753
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=357.23 Aligned_cols=211 Identities=27% Similarity=0.427 Sum_probs=179.4
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH-HhcccE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-LRSRLS 1324 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i~ 1324 (1496)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 578999999974 35999999999999999999999999999999999999999999999999998887654 467899
Q ss_pred EEccccccccc-chhhccCCC-CC--CcHHH-HHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPL-EE--STDEQ-IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~-~~--~sd~e-I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
++||++.+|.+ |+++|+... .. ..+++ ..++++..+ +++........+||+|||||++||||+++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999987 999999631 11 12222 233343332 22223344556899999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
+|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999998653 6899999999999986 9999999999999999999983
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=364.31 Aligned_cols=213 Identities=23% Similarity=0.362 Sum_probs=188.9
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
-.|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++++
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999974 3599999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEcccccccc-cchhhccCCC--C---------CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 039402 1324 SIIPQDPVMFE-GTVRSNLDPL--E---------ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1391 (1496)
Q Consensus 1324 ~iIpQdp~LF~-gTIR~NLdp~--~---------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll 1391 (1496)
+|+||++.+|. .|+++|+... . +..++++.++++..++.+...+ ...+||+|||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHHH
Confidence 99999998875 5999999642 1 1123467888988888654332 3467999999999
Q ss_pred HHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1392 CLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1392 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
+||||++++|++|+|||||++||+.+...+.+.|++..+ ++|||+++|+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988643 7899999999998876 9999999999999999999987
Q ss_pred h
Q 039402 1469 E 1469 (1496)
Q Consensus 1469 ~ 1469 (1496)
+
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 5
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=368.67 Aligned_cols=220 Identities=28% Similarity=0.501 Sum_probs=190.8
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCeeCCCC--C
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISLI--G 1315 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~i--~ 1315 (1496)
...|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 447999999999965 359999999999999999999999999999999999986 6899999999998753 4
Q ss_pred hHHHhcccEEEcccccccccchhhccCCC-C-------------------CCcHHHHHHHHHHcCCcHHHHhccCCcccc
Q 039402 1316 LHDLRSRLSIIPQDPVMFEGTVRSNLDPL-E-------------------ESTDEQIWEALDKCQLGDEVRKKEGKLDSK 1375 (1496)
Q Consensus 1316 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~-------------------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~ 1375 (1496)
...+|++++|+||++.+|.+|+++|+... . +..++++.++++.+++.+.+. ..
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-------DR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh-------HH
Confidence 66788999999999999999999999631 0 012455788888888754432 23
Q ss_pred cccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEE-EEE
Q 039402 1376 VTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLV-LLL 1453 (1496)
Q Consensus 1376 v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrI-lVL 1453 (1496)
......+||+|||||++|||||+++|+||||||||++||+.+...+.+.|++..++.|||+|+|+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 34556789999999999999999999999999999999999999999999988777899999999999876 9997 578
Q ss_pred eCCeEeEecChhhHhhcC
Q 039402 1454 NHGLIEEFDNPANLLENK 1471 (1496)
Q Consensus 1454 ~~G~IvE~g~p~~Ll~~~ 1471 (1496)
++|++++.|+++++++.+
T Consensus 274 ~~G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 274 TGGELVEYDDTDKIFENP 291 (305)
T ss_pred cCCEEEEeCCHHHHHhCc
Confidence 999999999999998654
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=355.81 Aligned_cols=214 Identities=32% Similarity=0.507 Sum_probs=187.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC-------------eeE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TKA 684 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g-------------~~~ 684 (1496)
++++|+++.|+..+++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 3678999999643335799999999999999999999999999999999999999999999988 269
Q ss_pred EEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 039402 685 YVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDI 763 (1496)
Q Consensus 685 yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 763 (1496)
|++|++++++.|++||+.++.. ...++..+.++.+++.+.++.+|.|.++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988999999998753 334455566777788888888988888888999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 764 YLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 764 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
+||||||++||+.+...+.+. +....+++|+|++||+++.+..||++++|++|++++.|+.+++....
T Consensus 161 lllDEP~~gLD~~~~~~l~~~-l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEA-LDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred EEEeCccccCCHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 999999999999998888654 44444789999999999998889999999999999999988876543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=377.26 Aligned_cols=218 Identities=26% Similarity=0.437 Sum_probs=190.7
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
..|+++|++++|.. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++..++. .|+++
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 36999999999964 359999999999999999999999999999999999999999999999999987664 46789
Q ss_pred EEEccccccccc-chhhccCC-CC--CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDP-LE--EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp-~~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
++++|++.+|.. |+++|+.. .. ..+ ++++.++++..++.+.....| .+||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 99999973 21 222 345678888888876655544 468999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCC
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKS 1472 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~ 1472 (1496)
||+++|++|+||||||+||..+.+.+.+.|++.. .+.|+|+|||+++.+.. ||+|+||++|++++.|+|+++.+++.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 9999999999999999999999999988887654 36899999999998765 99999999999999999999998877
Q ss_pred cHHH
Q 039402 1473 SSFS 1476 (1496)
Q Consensus 1473 s~F~ 1476 (1496)
..|-
T Consensus 243 ~~~~ 246 (377)
T PRK11607 243 TRYS 246 (377)
T ss_pred cHHH
Confidence 6553
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=360.75 Aligned_cols=222 Identities=27% Similarity=0.411 Sum_probs=189.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC--C---CccEEEECCeeCCC--CChH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE--P---AAGQILIDGIDISL--IGLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e--p---~~G~I~IDG~dI~~--i~l~ 1317 (1496)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999974 459999999999999999999999999999999999975 4 59999999999864 3455
Q ss_pred HHhcccEEEcccccccccchhhccCCC---CC--C---cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1318 DLRSRLSIIPQDPVMFEGTVRSNLDPL---EE--S---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~--~---sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
.+|++++++||+|.+|.+|+++|+... .. . .++++.++++.+++.+.+. ........+||+||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHHH
Confidence 678899999999999999999999621 11 1 1345677788887754332 1233445789999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
|++||||++++|+||||||||++||..+.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|++.+..
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988667899999999999976 9999999999999999999998
Q ss_pred hcCCcHH
Q 039402 1469 ENKSSSF 1475 (1496)
Q Consensus 1469 ~~~~s~F 1475 (1496)
.++...+
T Consensus 236 ~~~~~~~ 242 (252)
T PRK14255 236 LNPKEKE 242 (252)
T ss_pred cCCCChH
Confidence 7655443
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=351.66 Aligned_cols=200 Identities=29% Similarity=0.417 Sum_probs=175.8
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|++. . .|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5789999999642 2 39999999999999999999999999999999999999999999999986653 4678999
Q ss_pred Eccccccccc-chhhccCCC-C---C---CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1326 IPQDPVMFEG-TVRSNLDPL-E---E---STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp~-~---~---~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+||+|.+|.+ |+++|+... . . .+++++.++++.+++.+.....| .+||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999986 999999732 1 1 23557889999999876655544 36899999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEec
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g 1462 (1496)
+++|++|||||||++||+++...+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999865 37899999999999976 9999999999998864
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=365.55 Aligned_cols=224 Identities=24% Similarity=0.388 Sum_probs=189.9
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-----CCccEEEECCeeCCCC--C
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-----PAAGQILIDGIDISLI--G 1315 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~i--~ 1315 (1496)
...|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... .
T Consensus 37 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 346999999999964 359999999999999999999999999999999999865 4999999999998653 3
Q ss_pred hHHHhcccEEEcccccccccchhhccCCC---CCC-c----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1316 LHDLRSRLSIIPQDPVMFEGTVRSNLDPL---EES-T----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1316 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~-s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
...+|++++|+||+|.+|.+|+++|+... ... + ++++.++++..++.+.+.. .+ ......|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~----~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD---RL----DKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh---Hh----hCChhhCCHHH
Confidence 34678999999999999999999999631 111 1 2456678888877543321 12 33456899999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhh
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~ 1466 (1496)
|||++|||||+++|++|||||||++||+++...+.+.|++..+++|||+++|+++.+.+ ||+|++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999876 99999999999999999999
Q ss_pred HhhcCCcHH
Q 039402 1467 LLENKSSSF 1475 (1496)
Q Consensus 1467 Ll~~~~s~F 1475 (1496)
+.+++...+
T Consensus 268 ~~~~~~~~~ 276 (286)
T PRK14275 268 LFTNPKDRM 276 (286)
T ss_pred HHhCCCcHH
Confidence 987654433
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=370.18 Aligned_cols=212 Identities=26% Similarity=0.372 Sum_probs=182.9
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 5899999999964 3599999999999999999999999999999999999999999999999998754 356789999
Q ss_pred EEcccccccc-cchhhccCCC---CCCcHH----HHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVMFE-GTVRSNLDPL---EESTDE----QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~LF~-gTIR~NLdp~---~~~sd~----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
++||+|.+|. .|+++|+..+ ...++. ++.++++.+++.+. ++.. ...||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-------~~~~----~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-------ADVR----VALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-------hcCc----hhhCCHHHHHHHHHHHH
Confidence 9999999885 5999999621 122322 34556777766543 2333 34699999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
|+++|++|+|||||++||+.+...+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999864 47899999999999976 999999999999999999999754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=363.18 Aligned_cols=229 Identities=25% Similarity=0.347 Sum_probs=190.7
Q ss_pred eEEEEeEEeEeCC-------CCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH
Q 039402 1245 KIDLLDLQVRYAP-------QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~-------~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~ 1317 (1496)
.|+++||+++|.. ...++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++....+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 4899999999952 123699999999999999999999999999999999999999999999999999765666
Q ss_pred HHhcccEEEccccc--cccc-chhhccCC----C----CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch
Q 039402 1318 DLRSRLSIIPQDPV--MFEG-TVRSNLDP----L----EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1386 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~--LF~g-TIR~NLdp----~----~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~G 1386 (1496)
..|++++++||+|. ++.. |+.+|+.. . ....++++.++++.+++.+... +. ...+||+|
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~----~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA------SY----YPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH------hc----CchhcCHH
Confidence 66778999999985 4444 78888741 1 1112356788999999843221 11 23579999
Q ss_pred HHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecC
Q 039402 1387 QRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDN 1463 (1496)
Q Consensus 1387 QrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~ 1463 (1496)
||||++||||++++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999998643 7899999999999987 99999999999999999
Q ss_pred hhhHhhcCC-cHHHHHHHHHh
Q 039402 1464 PANLLENKS-SSFSQLVAEYT 1483 (1496)
Q Consensus 1464 p~~Ll~~~~-s~F~~l~~~~~ 1483 (1496)
++++.+++. ..+++++.++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~ 254 (267)
T PRK15112 234 TADVLASPLHELTKRLIAGHF 254 (267)
T ss_pred HHHHhcCCCCHHHHHHHHhcc
Confidence 999987643 34556665543
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=322.35 Aligned_cols=197 Identities=31% Similarity=0.447 Sum_probs=169.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~yv 686 (1496)
+.++++.|+|.. .=-..+++|++||++||+||+||||||||++|+|+..|.+|+|.++|. ++++
T Consensus 2 l~L~~V~~~y~~-----~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGH-----LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCc-----ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 456778888852 223578899999999999999999999999999999999999999995 4799
Q ss_pred ccCCccCCC-cHHHHhccCCC-------CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 039402 687 AQSPWIQSG-KIEDNILFGKE-------MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 758 (1496)
Q Consensus 687 ~Q~~~i~~~-ti~eNI~~g~~-------~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 758 (1496)
+|+..+|.- ||++||-+|.. .++++.+.++...++....+.+| .+|||||||||+|||++.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHHh
Confidence 999999965 99999999953 24567777888888887777666 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHH--hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 759 QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL--LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 759 ~~~~illLDep~saLD~~~~~~i~~~~~~~~--~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
++.+|+|||||||||||.-+..+.. ++..+ .++.|+++|||+++.+.. +|+++++++|+|.++|+.+++...
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~-Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLA-LVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHH-HHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 9999999999999999998887754 34333 358899999999999876 999999999999999999988754
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=359.65 Aligned_cols=223 Identities=24% Similarity=0.400 Sum_probs=187.3
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-----ccEEEECCeeCCC--CChH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA-----AGQILIDGIDISL--IGLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~-----~G~I~IDG~dI~~--i~l~ 1317 (1496)
-++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.+++. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 4889999999964 35999999999999999999999999999999999999874 8999999999975 3455
Q ss_pred HHhcccEEEccccccccc-chhhccCC-C--CC-CcHHH----HHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 039402 1318 DLRSRLSIIPQDPVMFEG-TVRSNLDP-L--EE-STDEQ----IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~g-TIR~NLdp-~--~~-~sd~e----I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
.+|++++|+||+|.+|.+ |+++|+.. . .. ..+++ ..+.++..++.+.+. +.++. ...+||+|||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~----~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK---DRLKT----PATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhh---hhhcC----CcccCCHHHH
Confidence 788999999999999985 99999962 1 11 12333 333455566544322 22333 3568999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhH
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
||++||||++++|+||||||||++||..+...+.+.|++..+++|+|+++|+++.+.+ ||+|++|++|++++.|+|+++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999986 999999999999999999999
Q ss_pred hhcCCcHHH
Q 039402 1468 LENKSSSFS 1476 (1496)
Q Consensus 1468 l~~~~s~F~ 1476 (1496)
++++...+.
T Consensus 235 ~~~~~~~~~ 243 (252)
T PRK14272 235 FTNPRDERT 243 (252)
T ss_pred HhCcCcHHH
Confidence 877655443
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=357.88 Aligned_cols=213 Identities=26% Similarity=0.429 Sum_probs=182.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH-Hhccc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-LRSRL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i 1323 (1496)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+ .|+++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 4899999999964 35999999999999999999999999999999999999999999999999998877654 57889
Q ss_pred EEEccccccccc-chhhccCCCC----CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPLE----EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~~----~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
+++||+|.+|.+ |+++|+.... ..+ ++.+.+.++..++.+. .......||+|||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL-----------RDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHH-----------hhcchhhCCHHHHHHHHHH
Confidence 999999999885 9999997431 112 2235555666555432 3334567999999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
||++++|++|+|||||++||+.+...+.+.+++.- .++|+|+++|+++.+.+ ||+|++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999999999998754 47899999999987765 999999999999999999999753
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=354.50 Aligned_cols=206 Identities=22% Similarity=0.323 Sum_probs=179.9
Q ss_pred eEEEEeEEeEeCCCC--CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH---H
Q 039402 1245 KIDLLDLQVRYAPQM--PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---L 1319 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~--~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---L 1319 (1496)
.|+++|++++|+++. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+..+ .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 599999999997532 25999999999999999999999999999999999999999999999999998887654 3
Q ss_pred -hcccEEEccccccccc-chhhccCC---CCCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 039402 1320 -RSRLSIIPQDPVMFEG-TVRSNLDP---LEES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1390 (1496)
Q Consensus 1320 -R~~i~iIpQdp~LF~g-TIR~NLdp---~~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQl 1390 (1496)
+++++++||+|.+|.+ |+++|+.. +... ..+++.++++.+++.+.....| ..||+|||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3679999999999885 99999863 1111 2356788899998876655443 4689999999
Q ss_pred HHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcccCEEEEEeCCeEeEe
Q 039402 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVIDSDLVLLLNHGLIEEF 1461 (1496)
Q Consensus 1391 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~ 1461 (1496)
++|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+..||+|++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988643 6899999999999988999999999999874
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=360.02 Aligned_cols=212 Identities=27% Similarity=0.391 Sum_probs=186.8
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+...++++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 3789999999964 35999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEcccccc-cccchhhccCCCC--C-----CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVM-FEGTVRSNLDPLE--E-----STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~L-F~gTIR~NLdp~~--~-----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
++||++.+ +..|+++|+.... . ..++++.++++..++.+...+. ...||+|||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD-----------YPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCC-----------cccCCHHHHHHHHHHHH
Confidence 99999987 6779999986321 1 1234577888888886543332 35799999999999999
Q ss_pred Hc------cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhH
Q 039402 1397 LL------KRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1397 LL------r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
|+ ++|++|+|||||++||+.+...+.+.|++.. ++.|||+++|+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999864 47899999999999875 999999999999999999998
Q ss_pred hh
Q 039402 1468 LE 1469 (1496)
Q Consensus 1468 l~ 1469 (1496)
.+
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 75
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=358.97 Aligned_cols=203 Identities=28% Similarity=0.400 Sum_probs=179.3
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++
T Consensus 12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 5999999999964 35999999999999999999999999999999999999999999999998763 5688999
Q ss_pred EEcccccccc-cchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 039402 1325 IIPQDPVMFE-GTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402 (1496)
Q Consensus 1325 iIpQdp~LF~-gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ 1402 (1496)
++||+|.+|. .|+++|+... ....++++.++++..++.+...+ ...+||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999987 5999999742 22235678888999988665433 235799999999999999999999
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChh
Q 039402 1403 ILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPA 1465 (1496)
Q Consensus 1403 ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~ 1465 (1496)
+|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999998864 37899999999999865 9999999999999988754
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=356.03 Aligned_cols=210 Identities=24% Similarity=0.424 Sum_probs=184.5
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|+. +++|+|+||+|.+||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 578999999974 359999999999999999999999999999999999999999999999999986653 4788999
Q ss_pred Eccccccccc-chhhccCCCC---CC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1326 IPQDPVMFEG-TVRSNLDPLE---ES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp~~---~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+||+|.+|.+ |+++|+.... .. .++++.+++++.++.+...+. ..+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999996321 11 235677888888886554433 257999999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
+++|++++|||||++||.++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|+++|.|+++++++.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999998654 6899999999999876 999999999999999999999854
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=366.21 Aligned_cols=217 Identities=25% Similarity=0.418 Sum_probs=194.8
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
..|+++||+.+|. ...+++|+|++|++||.+.++|||||||||++++|.||..|++|+|.|||.||..++.+ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 4699999999998 34699999999999999999999999999999999999999999999999999998876 4779
Q ss_pred EEEccccccccc-chhhccCC-CC---CCcH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDP-LE---ESTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp-~~---~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
++|+|+.-||+- ||++|+.. +. ...+ +.+.++|+.++|.++-...|. .|||||+||++||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----------qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH-----------QLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh-----------hhChHHHHHHHHH
Confidence 999999999977 99999863 22 1232 367899999999998777764 5699999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhc-ccCEEEEEeCCeEeEecChhhHhhcC
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVI-DSDLVLLLNHGLIEEFDNPANLLENK 1471 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~-~~DrIlVL~~G~IvE~g~p~~Ll~~~ 1471 (1496)
|||..+|++|+||||-|+||..-...+|.-+++.. .+.|.|.|||+-+... -+|||.||++|+|...|+|+|+..++
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999998888754 3789999999987765 59999999999999999999999998
Q ss_pred CcHH
Q 039402 1472 SSSF 1475 (1496)
Q Consensus 1472 ~s~F 1475 (1496)
.+.|
T Consensus 229 ~~~f 232 (352)
T COG3842 229 ATRF 232 (352)
T ss_pred chHH
Confidence 8776
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=363.56 Aligned_cols=213 Identities=26% Similarity=0.400 Sum_probs=184.6
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC--CChHHHhccc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL--IGLHDLRSRL 1323 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~--i~l~~LR~~i 1323 (1496)
|+++||+++|+.. +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++. .+...+|++|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 7899999999633 359999999999999999999999999999999999999999999999999853 2345688999
Q ss_pred EEEcccc--cccccchhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1324 SIIPQDP--VMFEGTVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1324 ~iIpQdp--~LF~gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
+|+||+| .+|..|+++|+... ...+ .+++.++++.+++.+..... ...||+|||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP-----------PHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC-----------hhhCCHHHHHHHHHH
Confidence 9999998 57889999999521 1122 24577888888886543322 357999999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
||++++|++|||||||++||+.+...+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999865 37899999999999875 999999999999999999999863
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=352.25 Aligned_cols=214 Identities=33% Similarity=0.519 Sum_probs=189.3
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~ 684 (1496)
++++|++++|+.. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4688999999632 247999999999999999999999999999999999999999999999873 68
Q ss_pred EEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 039402 685 YVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDI 763 (1496)
Q Consensus 685 yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 763 (1496)
|++|++++++.|++||+.++.. ...+.+.+.++.+.+.+.++.++.|..+..++++.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998753 345556667777788888899988888889999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCc
Q 039402 764 YLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGT 833 (1496)
Q Consensus 764 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~ 833 (1496)
+||||||++||+.+...+.+ ++....+++|+|++||+++.+..||++++|++|++++.|+.+++.....
T Consensus 160 llLDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 160 LILDEATSALDTESERLVQA-ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred EEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 99999999999999888864 5555556899999999999988899999999999999999988865543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=372.16 Aligned_cols=212 Identities=28% Similarity=0.429 Sum_probs=184.2
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+++|+. ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.... ...|++|+
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999964 35999999999999999999999999999999999999999999999999997654 56889999
Q ss_pred EEccccccc-ccchhhccCCCC---CCcH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVMF-EGTVRSNLDPLE---ESTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~LF-~gTIR~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
|+||++.+| ..|+++|+..+. ..+. +.+.++++.+++.+. .+..+ .+||+|||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~-------~~~~~----~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-------ADARV----SDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-------hCCCh----hhCCHHHHHHHHHHHH
Confidence 999999987 459999996321 1222 234566777776543 33333 4799999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
|+++|++|||||||++||+.+...+.+.|++.. .++|||+++|+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999864 47999999999999976 999999999999999999999764
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=355.69 Aligned_cols=216 Identities=28% Similarity=0.416 Sum_probs=193.0
Q ss_pred CccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------
Q 039402 615 ETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1496)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------ 682 (1496)
...++++|++++|+.. .+++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 3569999999999632 357999999999999999999999999999999999999999999999873
Q ss_pred -eEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 039402 683 -KAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761 (1496)
Q Consensus 683 -~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 761 (1496)
++|++|+|+++++|++||+........+++..+++..++.+.++.+|.|.++.+++.+.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 6999999999999999999876544556667778888898889999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 762 DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 762 ~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
+++||||||++||+++...+++ ++....+++|+|++||+++.+..||+|++|++|++++.|+++++.+..
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~-~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 245 (257)
T cd03288 176 SILIMDEATASIDMATENILQK-VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQE 245 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHH-HHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhcc
Confidence 9999999999999999877754 455555689999999999998889999999999999999999887543
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=351.62 Aligned_cols=211 Identities=32% Similarity=0.510 Sum_probs=188.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~ 683 (1496)
.++++|++++|+. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 4789999999952 346999999999999999999999999999999999999999999999872 6
Q ss_pred EEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 039402 684 AYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762 (1496)
Q Consensus 684 ~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1496)
+|++|+++++..|++||+.++.+ ...++..+.++.+++.+.++.+|.|.++..+....+|||||||||+||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998999999998754 34456667778888888889999899998999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHh
Q 039402 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
++||||||++||+.+.+.+.+ ++....+++|+|++||+++.++.||++++|++|++++.|+.+++..
T Consensus 160 llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQE-ALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999888865 4555556899999999999988899999999999999999887754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=352.42 Aligned_cols=214 Identities=31% Similarity=0.523 Sum_probs=188.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~ 684 (1496)
++++|+++.|+. ++++++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 367899999852 356999999999999999999999999999999999999999999999883 68
Q ss_pred EEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 039402 685 YVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDI 763 (1496)
Q Consensus 685 yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 763 (1496)
|++|++++++.|++||+.++.. ...+...+.++.+++.+.++.+|.|.++.+++++.+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998753 344445666777888888899999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcc
Q 039402 764 YLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTD 834 (1496)
Q Consensus 764 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~ 834 (1496)
+||||||++||+++...+.+ ++....+++|+|++||+.+.+..||++++|++|++++.|+.+++......
T Consensus 159 lllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~ 228 (236)
T cd03253 159 LLLDEATSALDTHTEREIQA-ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGL 228 (236)
T ss_pred EEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccH
Confidence 99999999999999888865 44444458999999999999878999999999999999998887664433
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=363.51 Aligned_cols=212 Identities=28% Similarity=0.405 Sum_probs=182.9
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCC--CCChHHHhccc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS--LIGLHDLRSRL 1323 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~--~i~l~~LR~~i 1323 (1496)
|+++||+++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999964 35999999999999999999999999999999999999999999999999985 34456788899
Q ss_pred EEEccccc--ccccchhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1324 SIIPQDPV--MFEGTVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1324 ~iIpQdp~--LF~gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
+++||+|. +|..|+.+|+... ...+ ++++.++++..++.+.... ...+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-----------PIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC-----------CchhCCHHHHHHHHHH
Confidence 99999985 6778999998631 1122 2345677888887554322 2457999999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
|||+.+|+||||||||++||+.+...+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|++++++..
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998864 47899999999999965 999999999999999999998754
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=352.83 Aligned_cols=197 Identities=31% Similarity=0.447 Sum_probs=170.2
Q ss_pred EEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEE
Q 039402 1247 DLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSII 1326 (1496)
Q Consensus 1247 ~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iI 1326 (1496)
+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++++
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 46899999964 35999999999999999999999999999999999999999999999998874 578899999
Q ss_pred cccccc---cccchhhccCCC-CC----------CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1327 PQDPVM---FEGTVRSNLDPL-EE----------STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1327 pQdp~L---F~gTIR~NLdp~-~~----------~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
||+|.+ |..|+++|+... .. ..++++.++++..++.+...+. ..+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHH
Confidence 999976 668999998632 11 1235678889999887654432 3579999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEec
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g 1462 (1496)
|||||+++|++|||||||++||+.+...+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999864 57899999999999976 8999999987 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=369.62 Aligned_cols=226 Identities=22% Similarity=0.328 Sum_probs=188.7
Q ss_pred eEEEEeEEeEeCC--CCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC----CCccEEEECCeeCCCCChHH
Q 039402 1245 KIDLLDLQVRYAP--QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE----PAAGQILIDGIDISLIGLHD 1318 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~--~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e----p~~G~I~IDG~dI~~i~l~~ 1318 (1496)
-++++|++++|.. +...+|+||||+|++||.+||||+||||||||+++|.|+.+ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999953 22459999999999999999999999999999999999986 58999999999999888766
Q ss_pred Hh----cccEEEccccc--ccc-cchhhccC-C---C---C----C--CcHHHHHHHHHHcCCcHHHHhccCCccccccc
Q 039402 1319 LR----SRLSIIPQDPV--MFE-GTVRSNLD-P---L---E----E--STDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1378 (1496)
Q Consensus 1319 LR----~~i~iIpQdp~--LF~-gTIR~NLd-p---~---~----~--~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e 1378 (1496)
++ ++|++|||||. ++. -||.+|+. + . + . ..++++.++|++++|.+.-.. + ..
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~----~----~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA----M----RS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH----H----hC
Confidence 53 47999999996 333 48888874 1 1 1 0 113467889999998643110 1 12
Q ss_pred CCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeC
Q 039402 1379 NGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNH 1455 (1496)
Q Consensus 1379 ~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~ 1455 (1496)
....||||||||++|||||+.+|+|||+||||++||+.+...|.+.|++..+ ++|+|+|||+++.+.. ||||+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 2357899999999999999999999999999999999999999999998653 7899999999999976 999999999
Q ss_pred CeEeEecChhhHhhcCCcHHHHH
Q 039402 1456 GLIEEFDNPANLLENKSSSFSQL 1478 (1496)
Q Consensus 1456 G~IvE~g~p~~Ll~~~~s~F~~l 1478 (1496)
|+|+|.|+++++++++...|.+.
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHH
Confidence 99999999999998766666553
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=352.38 Aligned_cols=208 Identities=26% Similarity=0.381 Sum_probs=183.8
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++||+++|+. . ..|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++|
T Consensus 2 l~~~~l~~~~~~-~---~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH-L---PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC-c---cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 789999999964 2 249999999999999999999999999999999999999999999999886644 3578999
Q ss_pred Eccccccccc-chhhccCC-CC-C-----CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1326 IPQDPVMFEG-TVRSNLDP-LE-E-----STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp-~~-~-----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+||+|.+|.+ |+++|+.. +. . ..++++.++++.+++.+.+.+.| ..||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999986 99999973 21 1 23456889999999877666555 36899999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
+++|+++||||||++||.++.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998653 7899999999999876 999999999999999999999854
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=366.59 Aligned_cols=211 Identities=24% Similarity=0.346 Sum_probs=187.1
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
++++|++++|.+ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ....+|+++++
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999964 459999999999999999999999999999999999999999999999999977 44678999999
Q ss_pred Eccccccccc-chhhccCCCC---CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1326 IPQDPVMFEG-TVRSNLDPLE---EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+||+|.+|.+ |+++||.... ..+ .+++.++++..++.+...+ ...+||+|||||++|||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-----------KIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-----------chhhCCHHHHHHHHHHHHH
Confidence 9999999987 9999996321 122 3456777888877655332 2457999999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
+++|++|+|||||++||+.+.+.+.+.|++..+++|||+++|+++.+.. ||||++|++|++++.|+++++.++
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998778999999999999987 999999999999999999999754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=359.27 Aligned_cols=213 Identities=23% Similarity=0.364 Sum_probs=182.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHH-hccc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-RSRL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i 1323 (1496)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |.++
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5999999999964 369999999999999999999999999999999999999999999999999998876664 4569
Q ss_pred EEEccccccccc-chhhccCCCCC-------------------C---cHHHHHHHHHHcCCcHHHHhccCCcccccccCC
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPLEE-------------------S---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~~~-------------------~---sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1380 (1496)
+++||+|.+|.+ |+++|+..... . ..+++.++++..++.+ ......
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~ 151 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-----------HANRQA 151 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-----------hhhCCh
Confidence 999999999986 99999974210 0 0123445555555533 333445
Q ss_pred CCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCe
Q 039402 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGL 1457 (1496)
Q Consensus 1381 ~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ 1457 (1496)
.+||+|||||++||||++.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+++|+++.+.+ ||+|++|++|+
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 68999999999999999999999999999999999999999999987643 6899999999999976 99999999999
Q ss_pred EeEecChhhHhhc
Q 039402 1458 IEEFDNPANLLEN 1470 (1496)
Q Consensus 1458 IvE~g~p~~Ll~~ 1470 (1496)
+++.|+++++.++
T Consensus 232 i~~~~~~~~~~~~ 244 (255)
T PRK11300 232 PLANGTPEEIRNN 244 (255)
T ss_pred EEecCCHHHHhhC
Confidence 9999999998753
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=357.03 Aligned_cols=223 Identities=23% Similarity=0.336 Sum_probs=186.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC----CccEEEECCeeCCCCChHHHh
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP----AAGQILIDGIDISLIGLHDLR 1320 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep----~~G~I~IDG~dI~~i~l~~LR 1320 (1496)
.|+++|++++| . .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 59999999999 2 3599999999999999999999999999999999999999 999999999998632 2234
Q ss_pred cccEEEccccc-ccc--cchhhccCC----C-CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1321 SRLSIIPQDPV-MFE--GTVRSNLDP----L-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1321 ~~i~iIpQdp~-LF~--gTIR~NLdp----~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
++++|+||+|. .|. .|+.+|+.. . ....+++++++++++++.+. ++.+......||+|||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 67999999985 443 477777531 1 12345678999999988642 11233445789999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999998653 6899999999999975 99999999999999999999987
Q ss_pred cCCc-HHHHHHH
Q 039402 1470 NKSS-SFSQLVA 1480 (1496)
Q Consensus 1470 ~~~s-~F~~l~~ 1480 (1496)
++.. .++.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (254)
T PRK10418 231 APKHAVTRSLVS 242 (254)
T ss_pred CCCCHHHHHHHH
Confidence 6554 4544554
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=352.31 Aligned_cols=209 Identities=26% Similarity=0.374 Sum_probs=181.8
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+++|.. .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcccccccccchhhccCC----CCC-CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1325 IIPQDPVMFEGTVRSNLDP----LEE-STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1325 iIpQdp~LF~gTIR~NLdp----~~~-~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
++||+|.+|+.|+++|+.. ... ..++++.++++..++.+.. ......+||+|||||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTI----------LTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHH----------hcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999963 111 1234566788888775321 223456899999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcccCEEEEEe-CCeEeEecChh
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVIDSDLVLLLN-HGLIEEFDNPA 1465 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~~DrIlVL~-~G~IvE~g~p~ 1465 (1496)
+|+++||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+..||+|++|+ ++..++.|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999998653 789999999999998899999995 55566778775
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=350.94 Aligned_cols=200 Identities=27% Similarity=0.445 Sum_probs=173.4
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
++++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 578999999963 359999999999999999999999999999999999999999999999998753 56789999
Q ss_pred Eccccccccc-chhhccCCCC---CC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1326 IPQDPVMFEG-TVRSNLDPLE---ES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp~~---~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+||++.+|.+ |+++|+.... .. .++++.++++..++.+...+ ...+||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANK-----------RVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhC-----------cHhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999985321 11 13456677777777554432 3457999999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEec
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g 1462 (1496)
+++|++|||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998864 46899999999999876 9999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=363.15 Aligned_cols=213 Identities=31% Similarity=0.501 Sum_probs=189.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+.+|..+ ..+|+||||+|++||.+|++||||||||||+++|.|+++|++|+|.++|.|...- ....|+++|
T Consensus 4 ~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 47899999999742 3599999999999999999999999999999999999999999999999998765 778999999
Q ss_pred EEccccccccc-chhhccCCCC-------CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPLE-------ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~~-------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
|+||+|.+++. |++|||+.+. ...++.+.+.++..+|.+.- +. ....||+|||||+.||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~----~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NK----KVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Cc----chhhcCHHHHHHHHHHHH
Confidence 99999998876 9999997532 12356788999999997622 11 235689999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC-C-cEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHFS-D-CTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~-~-~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
|+.+|++|||||||++||+.+...+.+.|++..+ + +||++.+|.++.+.. ||+|++|++|+++.+|+++++.+.
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999999875 4 699999999999988 999999999999999999998654
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=351.80 Aligned_cols=207 Identities=28% Similarity=0.398 Sum_probs=173.5
Q ss_pred EEEEeEEeEeCCCC--CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCCh---HHHh
Q 039402 1246 IDLLDLQVRYAPQM--PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL---HDLR 1320 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~--~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l---~~LR 1320 (1496)
|+++||+++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 269999999999999999999999999999999999999999999999999988763 5788
Q ss_pred cccEEEcccc--ccc-ccchhhccCC----CC-CCcHHH---H-HHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 039402 1321 SRLSIIPQDP--VMF-EGTVRSNLDP----LE-ESTDEQ---I-WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1321 ~~i~iIpQdp--~LF-~gTIR~NLdp----~~-~~sd~e---I-~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
++++|+||+| .++ ..|+++|+.. .. ...+++ . .++++..++.+ ........+||+|||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 8999999999 344 4699999852 11 112221 1 25566666531 122334467999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEec
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g 1462 (1496)
||++||||++++|+||+|||||++||+.+.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998754 7899999999999984 9999999999998865
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=350.91 Aligned_cols=203 Identities=28% Similarity=0.398 Sum_probs=175.5
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH---Hhcc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---LRSR 1322 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR~~ 1322 (1496)
|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++... +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 46999999999999999999999999999999999999999999999999998876543 6889
Q ss_pred cEEEccccccc-ccchhhccCCC---CCCcH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1323 LSIIPQDPVMF-EGTVRSNLDPL---EESTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1323 i~iIpQdp~LF-~gTIR~NLdp~---~~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
++|+||+|.+| ..|+++|+... ...++ +++.++++..++.+...+. ..+||+|||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-----------PIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------chhCCHHHHHHHHHH
Confidence 99999999874 66999999632 12222 3466788888876654433 357999999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeE
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEE 1460 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE 1460 (1496)
||++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|+|+++.+.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999864 46899999999999986 89999999999864
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=358.69 Aligned_cols=211 Identities=26% Similarity=0.381 Sum_probs=185.8
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
++++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999999888888889999
Q ss_pred Eccccc-ccccchhhccCCCC---------C--CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH
Q 039402 1326 IPQDPV-MFEGTVRSNLDPLE---------E--STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1393 (1496)
Q Consensus 1326 IpQdp~-LF~gTIR~NLdp~~---------~--~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~L 1393 (1496)
+||+|. .+..|+++|+.... . ..++++.++++++++.+...+ ....||+|||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHH
Confidence 999985 45679999995321 0 123467888988888654332 235799999999999
Q ss_pred HHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1394 GRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS-DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1394 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~-~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
|||++.+|+++||||||++||+.+...+.+.|++..+ +.|||+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999997643 6899999999999954 99999999999999999999864
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=356.55 Aligned_cols=223 Identities=25% Similarity=0.397 Sum_probs=189.5
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC------eeCCCCChHH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG------IDISLIGLHD 1318 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG------~dI~~i~l~~ 1318 (1496)
.|+++|++++|.. +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.++| .|+.+.+...
T Consensus 10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 5999999999964 4599999999999999999999999999999999999999997666655 6777777778
Q ss_pred HhcccEEEccccccccc-chhhccCCC----CCCcH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1319 LRSRLSIIPQDPVMFEG-TVRSNLDPL----EESTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1319 LR~~i~iIpQdp~LF~g-TIR~NLdp~----~~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
+|++++|+||+|.+|.+ |+++|+... +...+ +.+.++++..++.+.+.. .....+..||+||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~LS~G~~q 160 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-------RLNSPASQLSGGQQQ 160 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-------hhcCCcccCCHHHHH
Confidence 89999999999999976 999999721 11122 235677788887654311 123345679999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
|++||||++++|++|+|||||++||..+...+.+.|++..+++|||+++|+++.+.. ||++++|++|+++++|+++++.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999988777999999999999955 9999999999999999999998
Q ss_pred hcCCcHHH
Q 039402 1469 ENKSSSFS 1476 (1496)
Q Consensus 1469 ~~~~s~F~ 1476 (1496)
+++...+.
T Consensus 241 ~~~~~~~~ 248 (257)
T PRK14246 241 TSPKNELT 248 (257)
T ss_pred hCCCcHHH
Confidence 76554443
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=347.42 Aligned_cols=206 Identities=30% Similarity=0.430 Sum_probs=186.6
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~ 683 (1496)
.++++|+++.|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 37899999999632 357999999999999999999999999999999999999999999999873 6
Q ss_pred EEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 039402 684 AYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDI 763 (1496)
Q Consensus 684 ~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 763 (1496)
+|++|++.+++.|++||+.+......++..+.++..++.+.+..+|.|.++..++.+.+||||||||++||||++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987766667777778888899888999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecC
Q 039402 764 YLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGK 824 (1496)
Q Consensus 764 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~ 824 (1496)
+||||||++||+.+...+.+ .+....+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQK-TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999888765 5555556799999999999988899999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=371.68 Aligned_cols=204 Identities=22% Similarity=0.330 Sum_probs=177.3
Q ss_pred ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCe----eCCCCChHHH---h-cccEEEcccccc
Q 039402 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI----DISLIGLHDL---R-SRLSIIPQDPVM 1332 (1496)
Q Consensus 1261 ~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~----dI~~i~l~~L---R-~~i~iIpQdp~L 1332 (1496)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. |+...+.+.+ | ++++++||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 4899999999999999999999999999999999999999999999996 6777765554 3 579999999999
Q ss_pred cc-cchhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEE
Q 039402 1333 FE-GTVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKIL 1404 (1496)
Q Consensus 1333 F~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~IL 1404 (1496)
|+ .|+++|+... ...+ .++..++++.++|.+.....| .+||||||||++|||||+++|+||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 97 6999999631 1122 245678899999876654433 468999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCcHH
Q 039402 1405 MLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSF 1475 (1496)
Q Consensus 1405 iLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F 1475 (1496)
+||||||+||+.+...+++.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|++++.++...|
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~ 260 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDY 260 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHH
Confidence 99999999999999999999988653 7899999999999865 99999999999999999999997665433
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=335.26 Aligned_cols=203 Identities=32% Similarity=0.434 Sum_probs=170.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++..|+ +++.+|+||||+|++||+++|+|++||||||||++|.|..+|++|+|.++|.
T Consensus 3 ~i~~~nl~k~yp--~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYP--GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecC--CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 589999999996 4678999999999999999999999999999999999999999999999982
Q ss_pred --eEEEccCCccC-CCcHHHHhccCCC------------CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHH
Q 039402 683 --KAYVAQSPWIQ-SGKIEDNILFGKE------------MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQ 747 (1496)
Q Consensus 683 --~~yv~Q~~~i~-~~ti~eNI~~g~~------------~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 747 (1496)
+||++|++.+- ..|+.+|++.|+- +.++....++++ ++.+ |.....-.+..+|||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~a------Lerv--gi~~~A~qra~~LSGGQ 152 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA------LERV--GILDKAYQRASTLSGGQ 152 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHH------HHHc--CcHHHHHHHhccCCcch
Confidence 69999999875 5699999998752 233443334332 1211 11112246778999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCccc-cCCEEEEEeCCeEEEecCh
Q 039402 748 KQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKY 825 (1496)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~ 825 (1496)
+|||+|||||+++|+|+|-|||+|+|||.+++++++.+.+.. ..|.|+|+.-|++++.. +||||+-|++|+|++.|+.
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 999999999999999999999999999999999987655433 45899999999999976 5999999999999999999
Q ss_pred HHHH
Q 039402 826 NDLI 829 (1496)
Q Consensus 826 ~~l~ 829 (1496)
+|+-
T Consensus 233 ~el~ 236 (258)
T COG3638 233 SELT 236 (258)
T ss_pred hhhh
Confidence 8863
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=347.88 Aligned_cols=202 Identities=34% Similarity=0.503 Sum_probs=175.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.+++++++|+|+.. .++|+|+||++++|+.++|+|+||||||||++++.|.++|++|.|.++|.
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47889999999743 68999999999999999999999999999999999999999999999873
Q ss_pred eEEEccCC--ccCCCcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 KAYVAQSP--WIQSGKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 ~~yv~Q~~--~i~~~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
+|||+|+| .++..||.|.+.||.. ..+ ++.+++++.|++.+.. .+...+|||||||||+|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~-----------~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELL-----------DRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhc-----------cCCccccCCcceeeHHh
Confidence 69999999 6789999999999953 333 4455667777775543 35668999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
|.+|..+|+++|||||||+||+...+.+.+.+.+...+ ++|+|++|||++.+.. ||++++|++|+++.+|+++++.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999987654433334 6899999999999876 999999999999999999888754
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=347.66 Aligned_cols=201 Identities=25% Similarity=0.419 Sum_probs=176.9
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
++++||+++|.. +++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.|+.+.. .+|+++++
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999963 568999999999999999999999999999999999999999999999987643 46788999
Q ss_pred Eccccccccc-chhhccCC-CC---C---CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1326 IPQDPVMFEG-TVRSNLDP-LE---E---STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp-~~---~---~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+||+|.+|.+ |+++|+.. .. . ..++++.++++..++.+...+.| .+||+|||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999975 99999862 21 1 13456788999999876665554 36899999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecC
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDN 1463 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~ 1463 (1496)
+++|+|++|||||+++|.++...+.+.|++..+ ++|+|+|+|+++.+.+ ||+|++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998653 7899999999999876 99999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=349.64 Aligned_cols=200 Identities=28% Similarity=0.459 Sum_probs=173.1
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC--CChHHHhccc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL--IGLHDLRSRL 1323 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~--i~l~~LR~~i 1323 (1496)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .....+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 578999999964 359999999999999999999999999999999999999999999999999853 3456788999
Q ss_pred EEEcccccccc-cchhhccCCC----CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1324 SIIPQDPVMFE-GTVRSNLDPL----EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1324 ~iIpQdp~LF~-gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
+|+||+|.+|. .|+++|+... ...+ ++++.++++..++.+...+. ..+||+|||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAY-----------PAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC-----------ccccCHHHHHHHHHH
Confidence 99999999986 5999999642 1222 23466777777775544333 357999999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeE
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLI 1458 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~I 1458 (1496)
||++++|++|||||||++||+++.+.+.+.|++.. .++|||+++|+++.+.+ ||+|++|++|+|
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 47899999999999976 999999999985
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=355.25 Aligned_cols=222 Identities=21% Similarity=0.356 Sum_probs=184.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCee-----CCCCChHH-
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGID-----ISLIGLHD- 1318 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~d-----I~~i~l~~- 1318 (1496)
.|+++|++++|.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 5999999999964 359999999999999999999999999999999999999999999999999 87776655
Q ss_pred ---HhcccEEEccccc--ccc-cchhhccC----CCCCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCC
Q 039402 1319 ---LRSRLSIIPQDPV--MFE-GTVRSNLD----PLEES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWS 1384 (1496)
Q Consensus 1319 ---LR~~i~iIpQdp~--LF~-gTIR~NLd----p~~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1384 (1496)
.|++++|+||+|. ++. .|+++|+. .+... .++++.++++..++.+ ......+.+||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 153 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTFS 153 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccCC
Confidence 3567999999984 333 47888874 12211 1234555666665532 12335567899
Q ss_pred chHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEe
Q 039402 1385 MGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEF 1461 (1496)
Q Consensus 1385 ~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~ 1461 (1496)
+|||||++||||++++|+||+|||||++||+.+.+.+.+.|++..+ +.|||+|+|+++.+.+ ||+|++|++|++++.
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999987653 7899999999999985 999999999999999
Q ss_pred cChhhHhhcCCcHHHHH
Q 039402 1462 DNPANLLENKSSSFSQL 1478 (1496)
Q Consensus 1462 g~p~~Ll~~~~s~F~~l 1478 (1496)
|+|+++..++...|.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~ 250 (258)
T PRK11701 234 GLTDQVLDDPQHPYTQL 250 (258)
T ss_pred CCHHHHhcCCCCHHHHH
Confidence 99999987655445443
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=322.71 Aligned_cols=505 Identities=16% Similarity=0.137 Sum_probs=341.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 039402 292 IKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLV-ECLCQRFRVFRLQQLG 370 (1496)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~-~~l~~~~~~~~~~~~~ 370 (1496)
.-.++|.+++.++....+.++..+.. ..++-.+-+++............+.+++++..++ +.+++. ...-+|
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g---~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is~l----g~t~~g 76 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALG---IGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQL----GLTTLG 76 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 45678889988887766666555443 3334333344432221111111111122222222 222222 223345
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039402 371 IRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFG 450 (1496)
Q Consensus 371 ~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~ 450 (1496)
.+.-..++..+-+|.+.-+....++.+++.++..++.|+..|.-.+..+.+...+.+-+..++..|++.-+..++..++.
T Consensus 77 q~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ 156 (546)
T COG4615 77 QHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVW 156 (546)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55555666677888888888888888999999999999999996666777666666556666666766777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHH--HHHHHH-HHHHHHHHHHHHHHHHHHHH-
Q 039402 451 TVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEM--KFLSKI-INLRKRETGWLKKYVYTSAI- 526 (1496)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~--~~~~~i-~~~R~~E~~~l~~~~~~~~~- 526 (1496)
+++.+..+.....+..+...+..+..|+-.+..+.++.|-|.+|++.-.. .+.+.+ .+.++.+- ...+...+
T Consensus 157 ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~----~~~~~n~f~ 232 (546)
T COG4615 157 IVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH----HIIRANTFH 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh----hhhhhhHHH
Confidence 77777777777777777777888899999999999999999999886432 222222 11222221 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 039402 527 SSFVFWGAPTFVSVATFGTCILLNVPL-ESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDL 605 (1496)
Q Consensus 527 ~~~~~~~~p~~v~~~~f~~~~~~~~~L-~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 605 (1496)
+....|...++.+++....|+...-.. +...+.|....+-.++.|+.++...+..+.+|.++++||.++=..|+...-
T Consensus 233 ~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~- 311 (546)
T COG4615 233 LLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADF- 311 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccC-
Confidence 123345544454444444333332111 222445555556678899999999999999999999999997543332211
Q ss_pred ccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCee--
Q 039402 606 VEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-- 683 (1496)
Q Consensus 606 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~-- 683 (1496)
...++. +.-..++++|+.|+|... ..-+..||++|++||++-|+|.||||||||++++.|+++|++|+|.+||+.
T Consensus 312 ~~~q~~-p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~ 388 (546)
T COG4615 312 PRPQAF-PDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVS 388 (546)
T ss_pred CCCCcC-CcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCC
Confidence 111111 123469999999999743 377899999999999999999999999999999999999999999999964
Q ss_pred -----------EEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 684 -----------AYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 684 -----------~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
+-|+-+-|+|..++ -+.. .+++..++-++...+..-.+ +.+|.-+ ...||.|||+|+
T Consensus 389 ~e~ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~kts-l~d~~fs-----~~kLStGQkKRl 457 (546)
T COG4615 389 AEQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKTS-LNDGRFS-----NLKLSTGQKKRL 457 (546)
T ss_pred CCCHHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----ccccccchHHHH
Confidence 23444455554332 1222 34555555555544433222 2222221 247999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCccccCCEEEEEeCCeEEEe
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPAADLILVMKDGKITQA 822 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 822 (1496)
++--|+..+.|||+|||=-+--||+=++..++..+-.+ ..||||+.||||-.+...|||++.|++|++++.
T Consensus 458 All~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 99999999999999999999999999998888777544 359999999999999999999999999999874
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=365.50 Aligned_cols=203 Identities=26% Similarity=0.408 Sum_probs=177.1
Q ss_pred EeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEccccccc
Q 039402 1254 RYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMF 1333 (1496)
Q Consensus 1254 ~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF 1333 (1496)
+|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|++++++||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4643 359999999999999999999999999999999999999999999999999976 3456789999999999999
Q ss_pred cc-chhhccCCCC---CC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEE
Q 039402 1334 EG-TVRSNLDPLE---ES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILM 1405 (1496)
Q Consensus 1334 ~g-TIR~NLdp~~---~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILi 1405 (1496)
.+ |+++|+.... .. .++++.++++.+++.+...+. ..+||||||||++|||||+++|++|+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRP-----------VGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCc-----------hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 76 9999996421 11 134577888888886543322 35799999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1406 LDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1406 LDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
|||||++||+.+.+.+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999999864 46899999999999976 999999999999999999999764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=369.61 Aligned_cols=213 Identities=23% Similarity=0.388 Sum_probs=186.8
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC----ChHHHhc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI----GLHDLRS 1321 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~~LR~ 1321 (1496)
|++ |++++|... . .|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... .....|+
T Consensus 2 l~~-~l~k~~~~~---~-~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---C-LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---E-EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 999999642 2 399999999999999999999999999999999999999999999998753 2456788
Q ss_pred ccEEEcccccccc-cchhhccCC-CCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1322 RLSIIPQDPVMFE-GTVRSNLDP-LEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~-gTIR~NLdp-~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
+++|+||++.+|. .|+++|+.. .....++++.++++.+++.+.....| .+||||||||++|||||++
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHHc
Confidence 9999999999997 499999974 23345667889999998876655544 4789999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCcH
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSS 1474 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s~ 1474 (1496)
+|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++..++...
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~~ 223 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAMR 223 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcchh
Confidence 9999999999999999999999999998754 6899999999998876 9999999999999999999999877543
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=354.19 Aligned_cols=212 Identities=25% Similarity=0.297 Sum_probs=178.7
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc--CCCccEEEECCeeCCCCChHHH-hcc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV--EPAAGQILIDGIDISLIGLHDL-RSR 1322 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~L-R~~ 1322 (1496)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.+||.++...+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999963 35999999999999999999999999999999999994 7999999999999988877664 456
Q ss_pred cEEEccccccccc-chhhccCCC----CC------Cc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1323 LSIIPQDPVMFEG-TVRSNLDPL----EE------ST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1323 i~iIpQdp~LF~g-TIR~NLdp~----~~------~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
++++||+|.+|.+ |+++|+... .. .+ ++++.++++..++.+.. ++..+. ..||+||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G~ 149 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGGE 149 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHHH
Confidence 9999999999987 899998421 10 11 24566777777775321 121111 2499999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc--cCEEEEEeCCeEeEecCh
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID--SDLVLLLNHGLIEEFDNP 1464 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~--~DrIlVL~~G~IvE~g~p 1464 (1496)
|||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|++
T Consensus 150 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 150 KKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 999999999999999999999999999999999999999865 46899999999999986 799999999999999999
Q ss_pred hhHh
Q 039402 1465 ANLL 1468 (1496)
Q Consensus 1465 ~~Ll 1468 (1496)
++.-
T Consensus 230 ~~~~ 233 (243)
T TIGR01978 230 ELAK 233 (243)
T ss_pred HHhc
Confidence 8654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=368.26 Aligned_cols=203 Identities=28% Similarity=0.407 Sum_probs=171.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEE
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~y 685 (1496)
.++++|++++|+ +++++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|. ++|
T Consensus 3 ~l~i~~l~~~~~--~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYD--GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeC--CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 478999999994 1357999999999999999999999999999999999999999999999984 699
Q ss_pred EccCCccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 686 VAQSPWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 686 v~Q~~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
|+|++.+|. .|++|||.|+.. .+. ++..++++..++.+. .++...+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPL-----------LDRKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhH-----------hhCChhhCCHHHHHHHHHHHHH
Confidence 999999985 699999999753 222 233344555554332 3456689999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
+.+|+++|||||||+||+.+...+.+.+.+...+ +.|+|+|||+.+.+. .||+|++|++|++++.|+++++.+..
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 9999999999999999999999887655433333 899999999998875 49999999999999999999987653
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=366.06 Aligned_cols=203 Identities=24% Similarity=0.354 Sum_probs=169.7
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 618 LDIVDGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
++++|++++|+..+ ..++|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|.
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999996322 347999999999999999999999999999999999999999999999873
Q ss_pred --eEEEccCCccCC-CcHHHHhccCCC---CCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 683 --KAYVAQSPWIQS-GKIEDNILFGKE---MNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 683 --~~yv~Q~~~i~~-~ti~eNI~~g~~---~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
++|++|++.++. .|++|||.++.. .+++ +..++++..++.+ .....+.+|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~-----------~~~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-----------KHDSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHHHH
Confidence 699999999885 699999998642 2222 2233344444322 234667899999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
|||||+.+|+++|||||||+||+.+...+.+.+.+...+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 999999999999999999999999999887544333233 8999999999999865 99999999999999999999875
Q ss_pred c
Q 039402 831 S 831 (1496)
Q Consensus 831 ~ 831 (1496)
.
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 4
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=355.08 Aligned_cols=211 Identities=26% Similarity=0.353 Sum_probs=184.8
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCC--------ccEEEECCeeCCCCChH
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA--------AGQILIDGIDISLIGLH 1317 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~--------~G~I~IDG~dI~~i~l~ 1317 (1496)
|+++|++++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 789999999964 35999999999999999999999999999999999999998 99999999999888888
Q ss_pred HHhcccEEEccccc-ccccchhhccCCCC--------CC---cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCc
Q 039402 1318 DLRSRLSIIPQDPV-MFEGTVRSNLDPLE--------ES---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1385 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~-LF~gTIR~NLdp~~--------~~---sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~ 1385 (1496)
.+|+.++++||++. +|..|+++|+.... .. .++.++++++..++.+.. ......||+
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV-----------GRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 88889999999986 67889999996321 11 234567788888775432 234467999
Q ss_pred hHHHHHHHHHHHc---------cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEE
Q 039402 1386 GQRQLVCLGRVLL---------KRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLL 1453 (1496)
Q Consensus 1386 GQrQll~LARALL---------r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL 1453 (1496)
|||||++|||||+ .+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.+ ||+|++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999998653 6899999999999975 9999999
Q ss_pred eCCeEeEecChhhHhh
Q 039402 1454 NHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1454 ~~G~IvE~g~p~~Ll~ 1469 (1496)
++|++++.|+++++++
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999999975
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=394.10 Aligned_cols=228 Identities=22% Similarity=0.292 Sum_probs=156.7
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHh------ccc---CCCccEEEECC-------
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLF------RIV---EPAAGQILIDG------- 1308 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~------rl~---ep~~G~I~IDG------- 1308 (1496)
.++++|++. ..|+|+|++|++||.+||+|.+|||||||+.-++ ++. .+..+...++|
T Consensus 614 ~L~v~~l~~-------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 686 (943)
T PRK00349 614 FLKLKGARE-------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKV 686 (943)
T ss_pred eEEecCCcc-------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCce
Confidence 588888852 2599999999999999999999999999998764 212 12333333444
Q ss_pred -----eeCCC---------CCh-HHHhcccEE---------Ecccccccc-----------cchhhccCCCCC-------
Q 039402 1309 -----IDISL---------IGL-HDLRSRLSI---------IPQDPVMFE-----------GTVRSNLDPLEE------- 1346 (1496)
Q Consensus 1309 -----~dI~~---------i~l-~~LR~~i~i---------IpQdp~LF~-----------gTIR~NLdp~~~------- 1346 (1496)
.+|.. .+. +.+|.-.+= -++.-.+.. |+++.|+....+
T Consensus 687 v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 766 (943)
T PRK00349 687 IDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDV 766 (943)
T ss_pred EEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCcc
Confidence 33321 111 334444332 223222221 456655542211
Q ss_pred -----------------CcHHH-----HHHHHHHc----CCc---HHHHhccCCccc-ccccCCCCCCchHHHHHHHHHH
Q 039402 1347 -----------------STDEQ-----IWEALDKC----QLG---DEVRKKEGKLDS-KVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1347 -----------------~sd~e-----I~~aL~~~----~L~---~~i~~lp~gLdt-~v~e~G~nLS~GQrQll~LARA 1396 (1496)
.+-.| +.++++-. .+. +.+.. -||+. .++.....||||||||+.|||+
T Consensus 767 C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~~~l~~L~~--vgL~~l~l~~~~~tLSgGEkQRl~LAra 844 (943)
T PRK00349 767 CKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVD--VGLGYIKLGQPATTLSGGEAQRVKLAKE 844 (943)
T ss_pred ccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhhHHHHHHHH--CCCCcccccCCcccCCHHHHHHHHHHHH
Confidence 11111 22222221 011 11111 25554 3567778999999999999999
Q ss_pred HccCC---CEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEE------eCCeEeEecChhh
Q 039402 1397 LLKRS---KILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLL------NHGLIEEFDNPAN 1466 (1496)
Q Consensus 1397 LLr~~---~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL------~~G~IvE~g~p~~ 1466 (1496)
|+++| +++||||||++||+.+.+.+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|++
T Consensus 845 L~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~e 924 (943)
T PRK00349 845 LSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEE 924 (943)
T ss_pred HhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHH
Confidence 99999 9999999999999999999999998864 578999999999999999999999 7999999999999
Q ss_pred HhhcCCcHHHHHHHH
Q 039402 1467 LLENKSSSFSQLVAE 1481 (1496)
Q Consensus 1467 Ll~~~~s~F~~l~~~ 1481 (1496)
+.+++.|.=.+...+
T Consensus 925 l~~~~~s~t~~~l~~ 939 (943)
T PRK00349 925 VAKVEASYTGRYLKP 939 (943)
T ss_pred HHhCcccHHHHHHHH
Confidence 998776655555443
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=368.48 Aligned_cols=190 Identities=27% Similarity=0.382 Sum_probs=162.3
Q ss_pred CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC-----------------eeEEEccCCccCC
Q 039402 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-----------------TKAYVAQSPWIQS 694 (1496)
Q Consensus 632 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g-----------------~~~yv~Q~~~i~~ 694 (1496)
++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++||+|++++++
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 46799999999999999999999999999999999999999999999988 3699999999987
Q ss_pred -CcHHHHhccCCCC---CH-HHHHHH---HHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 039402 695 -GKIEDNILFGKEM---NR-ERYNAV---LDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLF 766 (1496)
Q Consensus 695 -~ti~eNI~~g~~~---~~-~~~~~v---~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illL 766 (1496)
.||+|||.|+.++ +. ++.+++ ++..+| ....++.+.+|||||||||+|||||+.+|+|+||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL-----------~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGL-----------EEYEHRYPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-----------chhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5999999987532 22 222333 333333 2335677889999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 039402 767 DDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 767 Dep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
||||||||+.+++.+++.+..... .++|+|+|||+++++.. ||+|++|++|++++.|++++++.+.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 999999999999999877665443 48999999999998654 9999999999999999999987653
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=349.61 Aligned_cols=200 Identities=30% Similarity=0.376 Sum_probs=165.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe---------------
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------------- 682 (1496)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 36789999995 357999999999999999999999999999999999999999999999772
Q ss_pred -eEEEccCCccCCC-cHHHHhccCCC----CCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 683 -KAYVAQSPWIQSG-KIEDNILFGKE----MNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 683 -~~yv~Q~~~i~~~-ti~eNI~~g~~----~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
++|++|++.++.. |++||+.++.. .+.+ +..++++.+++.+ .......+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-----------AEDLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHH
Confidence 5899999988875 99999987632 2222 2223333333321 234566799999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
||||++.+|+++||||||++||+.+...+.+.+..... .++|+|+|||+++++.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999998888754433333 38999999999998765 99999999999999999988764
Q ss_pred c
Q 039402 831 S 831 (1496)
Q Consensus 831 ~ 831 (1496)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 4
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=361.26 Aligned_cols=210 Identities=26% Similarity=0.399 Sum_probs=170.6
Q ss_pred ccEEEEeeEEEecCCC--CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC------------
Q 039402 616 TALDIVDGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------ 681 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g------------ 681 (1496)
..++++|++|+|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 4689999999996321 24699999999999999999999999999999999999999999999875
Q ss_pred -----------------eeEEEccCC--ccCCCcHHHHhccCCC---CCHHHHHHHHHHhchhhHHHhccCCCcccccCC
Q 039402 682 -----------------TKAYVAQSP--WIQSGKIEDNILFGKE---MNRERYNAVLDACSLKKDLEILSFGDQTVIGER 739 (1496)
Q Consensus 682 -----------------~~~yv~Q~~--~i~~~ti~eNI~~g~~---~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~ 739 (1496)
.++||+|+| ++++.|++|||.|+.. .+.+...+.. .+.++.+... ....++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~l~~~gL~-~~~~~~~ 173 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLA-----KFYLNKMGLD-DSYLERS 173 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHH-----HHHHHHcCCC-hhHhcCC
Confidence 158999998 7888999999998742 2222221111 1122222211 1235678
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccc-cCCEEEEEeCCe
Q 039402 740 GINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLP-AADLILVMKDGK 818 (1496)
Q Consensus 740 g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~ 818 (1496)
+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+.....+|+|+|+|||+++++. .||+|++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 8999999999999999999999999999999999999998887544333346899999999999875 599999999999
Q ss_pred EEEecChHHHHhc
Q 039402 819 ITQAGKYNDLINS 831 (1496)
Q Consensus 819 i~~~G~~~~l~~~ 831 (1496)
+++.|+++++...
T Consensus 254 i~~~g~~~~~~~~ 266 (320)
T PRK13631 254 ILKTGTPYEIFTD 266 (320)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999988654
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=331.30 Aligned_cols=205 Identities=26% Similarity=0.418 Sum_probs=171.7
Q ss_pred cEEEEeeEEEecCCC-CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 617 ALDIVDGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
.++++|.++.|+... ..++|+||||++.+||..+|+|+||||||||.++|+|..+|++|+|.++|+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 588999999997321 125999999999999999999999999999999999999999999999993
Q ss_pred -eEEEccCCcc---CCCcHHHHhccCCC-----CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 -KAYVAQSPWI---QSGKIEDNILFGKE-----MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 -~~yv~Q~~~i---~~~ti~eNI~~g~~-----~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
+-+|+|+|.- ...||++-|.-+.. -.+++..++++..+|.+.. ..+++.+|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~----------l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF----------LDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH----------HhcCchhcChhHHHHHHH
Confidence 4699999963 34578777754332 2344566777777775543 346778999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
||||..+|+++|||||||+||+.+...|++-+.+.. ..+-|.|+||||+..+.+ ||||.||++|++++.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999986544332 236799999999999987 999999999999999999998765
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=342.56 Aligned_cols=205 Identities=36% Similarity=0.537 Sum_probs=181.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~ 683 (1496)
.++++|+++.|+. ..+++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~~-~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPN-QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCC-CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 4789999999953 2357999999999999999999999999999999999999999999999883 6
Q ss_pred EEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 039402 684 AYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762 (1496)
Q Consensus 684 ~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1496)
+|++|+++++..|++||+.++.. .++++..+.++.+++.+.++..|.|.+|.+.+...+||||||||++||||+..+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 89999999988899999988753 34556677888889988888999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEec
Q 039402 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAG 823 (1496)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G 823 (1496)
++||||||++||+.+...+.+ .+....+++|+|++||+++.+..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKE-RLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999888865 455554458999999999988679999999999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=352.99 Aligned_cols=210 Identities=21% Similarity=0.302 Sum_probs=181.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCC---ccEEEECCeeCCCC-----Ch
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA---AGQILIDGIDISLI-----GL 1316 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~---~G~I~IDG~dI~~i-----~l 1316 (1496)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... ..
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 5899999999963 35999999999999999999999999999999999999986 49999999998754 24
Q ss_pred HHHhcccEEEccccccccc-chhhccCCCC---------------CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCC
Q 039402 1317 HDLRSRLSIIPQDPVMFEG-TVRSNLDPLE---------------ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380 (1496)
Q Consensus 1317 ~~LR~~i~iIpQdp~LF~g-TIR~NLdp~~---------------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1380 (1496)
..+|++++|+||++.+|.+ |+++|+.... ...++++.++++..++.+.... ..
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Cc
Confidence 5678899999999998875 9999996210 1123457778888887654433 33
Q ss_pred CCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCe
Q 039402 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGL 1457 (1496)
Q Consensus 1381 ~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~ 1457 (1496)
.+||+|||||++||||++.+|++|||||||++||.++.+.+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 5799999999999999999999999999999999999999999999875 37899999999998755 99999999999
Q ss_pred EeEecChhhH
Q 039402 1458 IEEFDNPANL 1467 (1496)
Q Consensus 1458 IvE~g~p~~L 1467 (1496)
+++.|+|+++
T Consensus 231 i~~~g~~~~~ 240 (262)
T PRK09984 231 VFYDGSSQQF 240 (262)
T ss_pred EEEeCCHHHh
Confidence 9999999996
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=331.23 Aligned_cols=171 Identities=42% Similarity=0.729 Sum_probs=162.0
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|+...+.+++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 57899999997543469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEE
Q 039402 1326 IPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILM 1405 (1496)
Q Consensus 1326 IpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILi 1405 (1496)
+||+|.+|++|+++|+ ||+|||||++||||++++|++|+
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 89999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCe
Q 039402 1406 LDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGL 1457 (1496)
Q Consensus 1406 LDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ 1457 (1496)
|||||++||+.+...+.+.|++..+++|+|+++|+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998877799999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=352.18 Aligned_cols=201 Identities=25% Similarity=0.301 Sum_probs=174.1
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +.++++
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999964 4599999999999999999999999999999999999999999999999998642 346899
Q ss_pred Ecccccccc-cchhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1326 IPQDPVMFE-GTVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1326 IpQdp~LF~-gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+||+|.+|. .|+++|+... .... ++++.++++..++.+...+ ...+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999887 5999999632 1122 2457788888887654433 2357999999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEe--CCeEeEecCh
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLN--HGLIEEFDNP 1464 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~--~G~IvE~g~p 1464 (1496)
+++|++|||||||++||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|+ +|++++.+++
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999999863 37999999999999876 99999998 5999998764
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=343.60 Aligned_cols=446 Identities=18% Similarity=0.204 Sum_probs=314.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhcCCCH--H---HHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHH
Q 039402 360 RFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSS--G---EIINFMTVDAERVADFSWYIH-DPWLVLFEVALSI 433 (1496)
Q Consensus 360 ~~~~~~~~~~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~--G---~i~nl~s~D~~~i~~~~~~~~-~~~~~pl~i~~~~ 433 (1496)
....|..+++..+.|..|...+.+|=+.-....+-.... + ..=+++..|+..+.+....+. .+.-..++++.-.
T Consensus 104 v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~ 183 (604)
T COG4178 104 VAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFT 183 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 345667789999999999999999988877544322111 1 233688899888877544332 3333344444444
Q ss_pred HHHHHHhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCc
Q 039402 434 LILYKNLGI---------------ASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGW 498 (1496)
Q Consensus 434 ~lL~~~lg~---------------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~w 498 (1496)
.+||...|. ...+.++-+++...+...++|...+...+..+.-..-......+.++...|-+|+-
T Consensus 184 ~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~G 263 (604)
T COG4178 184 GILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRG 263 (604)
T ss_pred HHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence 566644331 11111111222222233344444443333333333334455677888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHH
Q 039402 499 EMKFLSKIINLRKRETGWLKKY----VYTSAISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYN 574 (1496)
Q Consensus 499 E~~~~~~i~~~R~~E~~~l~~~----~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~ 574 (1496)
|+...+++.+.-..=++..++. ..+..+.....++++++-..+ .+=.++.+.++-|.+..+...|+.+...++.
T Consensus 264 E~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li--~ap~~f~g~i~~G~lmqa~~aF~~v~sslsw 341 (604)
T COG4178 264 EKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILI--AAPRYFSGQITFGGLMQAVGAFGQVHSSLSW 341 (604)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHh--ccHhhhcCcChHHHHHHHHHHHHHHHHHHHH
Confidence 9988777765333222221111 111111222222222111111 1122467899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCC--CCccccCCCC------CCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCC
Q 039402 575 LPDVISMIIQTKVSLQRIASFFCLDDL--QPDLVEKQPS------GSSETALDIVDGNFSWDISSHNPTLKDINLKVFHG 646 (1496)
Q Consensus 575 lp~~i~~~~~a~vs~~Ri~~fL~~~e~--~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G 646 (1496)
+-+.+..+.+=++++.|+.+|-..-|. .++.....+. ...+..|.++|++..-+ ++++.+++.||++++|
T Consensus 342 fi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p--~~~~ll~~l~~~v~~G 419 (604)
T COG4178 342 FIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTP--DGQTLLSELNFEVRPG 419 (604)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECC--CCCeeeccceeeeCCC
Confidence 999999999999999999999854321 0111100000 11146799999999875 3458999999999999
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC--eeEEEccCCccCCCcHHHHhccCCC---CCHHHHHHHHHHhch
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQSGKIEDNILFGKE---MNRERYNAVLDACSL 721 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g--~~~yv~Q~~~i~~~ti~eNI~~g~~---~~~~~~~~v~~~~~l 721 (1496)
|.+.|.||||||||||+++|.|..|--+|+|.... ..-|+||.|.+..||.||-|++... ++++.+.+++..|+|
T Consensus 420 ~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL 499 (604)
T COG4178 420 ERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGL 499 (604)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCc
Confidence 99999999999999999999999999999998873 3689999999999999999999753 678999999999999
Q ss_pred hhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccC
Q 039402 722 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQ 801 (1496)
Q Consensus 722 ~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~ 801 (1496)
.+-.+.+...++ -...||+|||||+++||.++++|++++|||.|||||++++..+++ .++..+.+.|+|-|.|+
T Consensus 500 ~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q-~l~~~lp~~tvISV~Hr 573 (604)
T COG4178 500 GDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ-LLKEELPDATVISVGHR 573 (604)
T ss_pred HHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHH-HHHhhCCCCEEEEeccc
Confidence 998888765443 346899999999999999999999999999999999999999985 56666789999999999
Q ss_pred cCccccCCEEEEEe
Q 039402 802 VEFLPAADLILVMK 815 (1496)
Q Consensus 802 ~~~l~~~d~i~~l~ 815 (1496)
.......++.+.+.
T Consensus 574 ~tl~~~h~~~l~l~ 587 (604)
T COG4178 574 PTLWNFHSRQLELL 587 (604)
T ss_pred hhhHHHHhhheeec
Confidence 88777666666554
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=329.41 Aligned_cols=220 Identities=26% Similarity=0.438 Sum_probs=185.5
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH-Hhccc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-LRSRL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i 1323 (1496)
-++++||+..|.+ -.+|+||||++++||.++++||||+|||||+++|+|+.+|.+|+|.++|.||+..+.|+ .|..|
T Consensus 3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 3789999999976 35999999999999999999999999999999999999999999999999999999988 58889
Q ss_pred EEEccccccccc-chhhccCCCCCC-cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPLEES-TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS 1401 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~~~~-sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~ 1401 (1496)
++|||...+|.. ||.|||...... .+++-++. .+ |.+-++---|.......+.+|||||+|.++|||||..+|
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~-e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DL-EEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccc----cH-HHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCC
Confidence 999999999976 999999742211 11011100 01 111121112444455668899999999999999999999
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcC
Q 039402 1402 KILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471 (1496)
Q Consensus 1402 ~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~ 1471 (1496)
|+|+|||||.+|-|.--+.|.++|++..+ +-||+.|-++.....+ +||.+||++|+|+..|++++|++++
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 99999999999999999999999998874 4599999999998876 9999999999999999999999765
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=346.08 Aligned_cols=202 Identities=25% Similarity=0.349 Sum_probs=176.6
Q ss_pred EEEEeEEeEeCCCC--CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH---HHh
Q 039402 1246 IDLLDLQVRYAPQM--PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH---DLR 1320 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~--~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR 1320 (1496)
++++|++++|+++. ..+|+|+||++++||++||+|++|||||||+++|.|+++|++|+|++||.++..++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996532 4699999999999999999999999999999999999999999999999999877643 468
Q ss_pred cccEEEcccccccc-cchhhccCCCC----CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 039402 1321 SRLSIIPQDPVMFE-GTVRSNLDPLE----EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1391 (1496)
Q Consensus 1321 ~~i~iIpQdp~LF~-gTIR~NLdp~~----~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll 1391 (1496)
++++++||+|.+|. .|+.+|+.... ..+ ++++.++++++++.+...+.| .+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999987 69999997321 222 235677888888876665544 46899999999
Q ss_pred HHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcccCEEEEEeCCeE
Q 039402 1392 CLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVIDSDLVLLLNHGLI 1458 (1496)
Q Consensus 1392 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~I 1458 (1496)
+||||++++|++|+|||||++||+++.+.+.+.|++..+ ++|||+|+|+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999988753 7999999999997767999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=363.05 Aligned_cols=202 Identities=27% Similarity=0.386 Sum_probs=170.1
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEE
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~y 685 (1496)
.++++|++++|. ++++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|. ++|
T Consensus 6 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 6 FVVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred EEEEEeEEEEEC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 589999999995 357899999999999999999999999999999999999999999999884 699
Q ss_pred EccCCccCC-CcHHHHhccCCC---CCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 686 VAQSPWIQS-GKIEDNILFGKE---MNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 686 v~Q~~~i~~-~ti~eNI~~g~~---~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
|+|++.+|. .|++|||.|+.. .+++ +.+++++..++.. ...+...+|||||||||+|||||
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~-----------~~~r~~~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG-----------FEDRYVDQISGGQQQRVALARAL 151 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHHHHH
Confidence 999999986 599999999743 2222 2233333333321 23566789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
+.+|+++|||||||+||+.+...+.+.+.....+ ++|+|+|||+.+++.. ||+|++|++|++++.|+++++....
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999887654333333 8999999999998754 9999999999999999999987543
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=342.15 Aligned_cols=204 Identities=26% Similarity=0.427 Sum_probs=178.9
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
++++||+++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ++++++
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 478999999964 35999999999999999999999999999999999999999999999999876422 357999
Q ss_pred Ecccccccc-cchhhccCC---CCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 039402 1326 IPQDPVMFE-GTVRSNLDP---LEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS 1401 (1496)
Q Consensus 1326 IpQdp~LF~-gTIR~NLdp---~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~ 1401 (1496)
+||++.+|. .|+++|+.. ....+++++.++++..++.+..... ..+||+|||||++||||++++|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-----------AKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 599999863 1233567888999999987654332 3578999999999999999999
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhh
Q 039402 1402 KILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1402 ~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~ 1466 (1496)
++|+|||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999864 46899999999999865 99999999999999999875
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=331.71 Aligned_cols=172 Identities=34% Similarity=0.521 Sum_probs=159.5
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC--hHHHhccc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG--LHDLRSRL 1323 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~--l~~LR~~i 1323 (1496)
|+++|++++|+. .++++|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++..+ ....|+.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999964 35999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred EEEccccccccc-chhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ 1402 (1496)
+++||+|.+|.+ |+++|+... ||+|||||++||||++++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998865 999998753 89999999999999999999
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCe
Q 039402 1403 ILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGL 1457 (1496)
Q Consensus 1403 ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~ 1457 (1496)
+++|||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999998654 5899999999999985 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=350.59 Aligned_cols=221 Identities=27% Similarity=0.371 Sum_probs=184.4
Q ss_pred eEEEEeEEeEeCCC-------CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH
Q 039402 1245 KIDLLDLQVRYAPQ-------MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH 1317 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~-------~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~ 1317 (1496)
.|+++||+++|+.+ ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38999999999741 24699999999999999999999999999999999999999999999999999887653
Q ss_pred ---HHhcccEEEccccc--cc-ccchhhccCC-C---CCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCC
Q 039402 1318 ---DLRSRLSIIPQDPV--MF-EGTVRSNLDP-L---EES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1383 (1496)
Q Consensus 1318 ---~LR~~i~iIpQdp~--LF-~gTIR~NLdp-~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1383 (1496)
.+|++++++||+|. ++ ..|+++|+.. . ... .++.+.++++..++... ........|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCccC
Confidence 46889999999983 43 4699999742 1 111 12245566666655421 123345689
Q ss_pred CchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeE
Q 039402 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEE 1460 (1496)
Q Consensus 1384 S~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE 1460 (1496)
|+|||||++|||||+++|+||||||||++||..+...+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999988653 7899999999999986 99999999999999
Q ss_pred ecChhhHhhcCCcHHH
Q 039402 1461 FDNPANLLENKSSSFS 1476 (1496)
Q Consensus 1461 ~g~p~~Ll~~~~s~F~ 1476 (1496)
.|+++++.. .++.|.
T Consensus 233 ~g~~~~~~~-~~~~~~ 247 (268)
T PRK10419 233 TQPVGDKLT-FSSPAG 247 (268)
T ss_pred eCChhhccC-CCCHHH
Confidence 999999985 345444
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=365.37 Aligned_cols=212 Identities=25% Similarity=0.389 Sum_probs=182.1
Q ss_pred eEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC----hHHHhcccEE
Q 039402 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG----LHDLRSRLSI 1325 (1496)
Q Consensus 1250 nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~----l~~LR~~i~i 1325 (1496)
|++++|... .+ |+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ....|+++++
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999642 24 999999999999999999999999999999999999999999999987542 3457889999
Q ss_pred Eccccccccc-chhhccCCC-CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1326 IPQDPVMFEG-TVRSNLDPL-EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp~-~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
+||+|.+|.+ |+++|+... .... ++++.+.++..++.+..... ...||||||||++|||||++
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRL-----------PGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHHc
Confidence 9999999976 999999732 1111 23477788888776554433 35789999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCcHHH
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFS 1476 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~ 1476 (1496)
+|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++...|.
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 228 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWL 228 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCcccc
Confidence 9999999999999999999999999998653 6899999999999876 999999999999999999999987765553
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=330.18 Aligned_cols=170 Identities=33% Similarity=0.557 Sum_probs=157.8
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
++++|++++|+.. ++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ .++|+++++
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4789999999642 5999999999999999999999999999999999999999999999999998765 678899999
Q ss_pred Eccccccccc-chhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEE
Q 039402 1326 IPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKIL 1404 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~IL 1404 (1496)
+||+|.+|.+ |+++|+. ||+|||||++||||++++|+||
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999987 9999974 8999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeE
Q 039402 1405 MLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLI 1458 (1496)
Q Consensus 1405 iLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~I 1458 (1496)
+|||||++||+.+.+.+.+.|++.. ++.|+|+++|+.+.+.+ ||+|++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999865 35899999999999884 999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=354.91 Aligned_cols=203 Identities=26% Similarity=0.437 Sum_probs=170.0
Q ss_pred EEEEeeEEEecCCC--CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 618 LDIVDGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996322 246999999999999999999999999999999999999999999999873
Q ss_pred ----eEEEccCC--ccCCCcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHH
Q 039402 683 ----KAYVAQSP--WIQSGKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 749 (1496)
Q Consensus 683 ----~~yv~Q~~--~i~~~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 749 (1496)
++||+|+| .+++.|++|||.|+.. .+. ++..++++.++|.+++ .+.++.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 58999998 5778899999998732 222 2334455555553222 24567899999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChH
Q 039402 750 RIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 826 (1496)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 826 (1496)
|++|||||+.+|+++||||||++||+.+...+.+. ++.+ . .|.|||++||+++.+.. ||+|++|++|++++.|+++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~-L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEM-FYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999998888754 4444 3 38999999999999865 9999999999999999998
Q ss_pred HHHhc
Q 039402 827 DLINS 831 (1496)
Q Consensus 827 ~l~~~ 831 (1496)
++.+.
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 87643
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=354.14 Aligned_cols=202 Identities=25% Similarity=0.436 Sum_probs=169.2
Q ss_pred EEEEeeEEEecCCC--CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 618 LDIVDGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
++++|++++|+... .+++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 68999999996321 136999999999999999999999999999999999999999999999873
Q ss_pred ----eEEEccCC--ccCCCcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHH
Q 039402 683 ----KAYVAQSP--WIQSGKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 749 (1496)
Q Consensus 683 ----~~yv~Q~~--~i~~~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 749 (1496)
++||+|+| .++..|+.||+.|+.. .+. +++.++++..++.++ ..++...+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE----------FWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hccCCcccCCHHHHH
Confidence 58999998 6888899999998742 222 233444444444222 124667899999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHH
Q 039402 750 RIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 827 (1496)
|++|||||+.+|+++||||||++||+.+.+.+.+ ++..+ .+|+|||++||+++++.. ||+|++|++|++++.|++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ-LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999888875 44444 358999999999998864 99999999999999999998
Q ss_pred HHh
Q 039402 828 LIN 830 (1496)
Q Consensus 828 l~~ 830 (1496)
+..
T Consensus 231 ~~~ 233 (288)
T PRK13643 231 VFQ 233 (288)
T ss_pred HHc
Confidence 864
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=336.28 Aligned_cols=185 Identities=26% Similarity=0.349 Sum_probs=164.4
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc--cCCCccEEEECCeeCCCCChHHH-hcc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI--VEPAAGQILIDGIDISLIGLHDL-RSR 1322 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl--~ep~~G~I~IDG~dI~~i~l~~L-R~~ 1322 (1496)
++++|++++|.. .++|+|+||++++||++||+|++|||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999963 3599999999999999999999999999999999999 58999999999999998876654 567
Q ss_pred cEEEccccccccc-chhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 039402 1323 LSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS 1401 (1496)
Q Consensus 1323 i~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~ 1401 (1496)
++|+||+|.+|.+ |+++|++ . ...+||+|||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l~------------------------~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFLR------------------------Y-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHHh------------------------h-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999986 6666550 0 12469999999999999999999
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEccCcchhc--ccCEEEEEeCCeEeEecChhhHh
Q 039402 1402 KILMLDEATASVDTATDNLIQQTLRQHFS-DCTVLTIAHRITSVI--DSDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1402 ~ILiLDEaTsslD~~Td~~Iq~~I~~~f~-~~TVI~IAHRl~ti~--~~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
+||+|||||++||+.+...+.+.|++..+ ++|+|+++|+++.+. .||+|++|++|++++.| +.++.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999999988643 789999999999998 59999999999999999 66665
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=354.06 Aligned_cols=204 Identities=26% Similarity=0.430 Sum_probs=169.4
Q ss_pred cEEEEeeEEEecCCC--CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------
Q 039402 617 ALDIVDGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------ 682 (1496)
.++++|+++.|+... .+++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999996322 247999999999999999999999999999999999999999999999872
Q ss_pred ---eEEEccCC--ccCCCcHHHHhccCCC---CCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHH
Q 039402 683 ---KAYVAQSP--WIQSGKIEDNILFGKE---MNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750 (1496)
Q Consensus 683 ---~~yv~Q~~--~i~~~ti~eNI~~g~~---~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 750 (1496)
++||+|+| .+++.|++|||.|+.. .+.+ +..++++.+++. +.+..++.+.+||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHH
Confidence 58999998 5678899999998642 2322 233444444442 1123457788999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHH
Q 039402 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~ 827 (1496)
++|||||+.+|+++||||||++||+.+...+.+ ++..+ . .|+|||+|||+++++. .||+|++|++|++++.|+.++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILN-KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999988875 45444 3 3899999999999875 599999999999999999988
Q ss_pred HHh
Q 039402 828 LIN 830 (1496)
Q Consensus 828 l~~ 830 (1496)
+.+
T Consensus 232 ~~~ 234 (287)
T PRK13637 232 VFK 234 (287)
T ss_pred HHh
Confidence 764
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=362.06 Aligned_cols=202 Identities=35% Similarity=0.420 Sum_probs=171.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEE
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~y 685 (1496)
.++++|++++|+ ++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+ ++|
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFG---AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 589999999995 356899999999999999999999999999999999999999999999984 699
Q ss_pred EccCCccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 686 VAQSPWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 686 v~Q~~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
|+|++.+|. .|++|||.|+.. .+. ++.+++++..++. ....+++.+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-----------~~~~~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-----------GSERKYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-----------chhhCChhhCCHHHHHHHHHHHHH
Confidence 999999985 699999999743 222 2233333433332 234567789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
+.+|+++|||||||+||+.+..++.+.+.+...+ +.|+|+|||+.+++.. ||+|++|++|++++.|+++++.+..
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999887654433333 8999999999998754 9999999999999999999998653
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=345.67 Aligned_cols=222 Identities=20% Similarity=0.342 Sum_probs=183.9
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCee-----CCCCChHH-
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGID-----ISLIGLHD- 1318 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~d-----I~~i~l~~- 1318 (1496)
.|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +..++..+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 5899999999964 358999999999999999999999999999999999999999999999988 77766543
Q ss_pred ---HhcccEEEccccc--c-cccchhhccC----CCCC----CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCC
Q 039402 1319 ---LRSRLSIIPQDPV--M-FEGTVRSNLD----PLEE----STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWS 1384 (1496)
Q Consensus 1319 ---LR~~i~iIpQdp~--L-F~gTIR~NLd----p~~~----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1384 (1496)
++++++++||+|. + +..|+.+|+. .+.. ..++++.+.+++.++.+ +.......+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~LS 150 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAFS 150 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhcC
Confidence 3467999999985 2 3457888863 1111 12345666666666542 12233456899
Q ss_pred chHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEe
Q 039402 1385 MGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEF 1461 (1496)
Q Consensus 1385 ~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~ 1461 (1496)
+|||||++|||||+++|++|+|||||++||+.+.+.+.+.|++..+ +.|+|+|+|+++.+.. ||++++|++|++++.
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988643 7899999999999986 999999999999999
Q ss_pred cChhhHhhcCCcHHHHH
Q 039402 1462 DNPANLLENKSSSFSQL 1478 (1496)
Q Consensus 1462 g~p~~Ll~~~~s~F~~l 1478 (1496)
|+++++..++...|.++
T Consensus 231 ~~~~~~~~~~~~~~~~~ 247 (253)
T TIGR02323 231 GLTDQVLDDPQHPYTQL 247 (253)
T ss_pred CCHHHHhcCCCCHHHHH
Confidence 99999987655555443
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=362.09 Aligned_cols=203 Identities=28% Similarity=0.372 Sum_probs=171.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eE
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 684 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~ 684 (1496)
..++++|++++|. ++++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|. ++
T Consensus 13 ~~L~l~~l~~~~~---~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 13 PLVELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred ceEEEEEEEEEEC---CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 3589999999995 357899999999999999999999999999999999999999999999984 69
Q ss_pred EEccCCccCC-CcHHHHhccCCCC---CH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH
Q 039402 685 YVAQSPWIQS-GKIEDNILFGKEM---NR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 756 (1496)
Q Consensus 685 yv~Q~~~i~~-~ti~eNI~~g~~~---~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 756 (1496)
||+|++.+|. .||+|||.|+... .+ ++.+++++..++.+. ..++..+|||||||||+||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~p~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEF-----------AQRKPHQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHHHHHH
Confidence 9999999885 5999999997532 22 223344444444332 345668999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 757 LYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
|+.+|+++|||||||+||++....+.+.+.+... .+.|+|+|||+.+++. .||+|++|++|+|++.|+++++.+..
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999998888655443333 3899999999999865 59999999999999999999987653
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=344.35 Aligned_cols=208 Identities=30% Similarity=0.427 Sum_probs=181.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.++++||+++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +.+++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 5899999999964 3599999999999999999999999999999999999999999999987 35799
Q ss_pred EEcccccccc---cchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 039402 1325 IIPQDPVMFE---GTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS 1401 (1496)
Q Consensus 1325 iIpQdp~LF~---gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~ 1401 (1496)
++||+|.++. .|+++|+......+++++.++++.+++.+..... ...||+|||||++||||++++|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998765 3899997543345678899999999987665432 3579999999999999999999
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCcHHHHH
Q 039402 1402 KILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFSQL 1478 (1496)
Q Consensus 1402 ~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l 1478 (1496)
++|+|||||++||+.+...+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++ ++++.|+++++.+ +..|.++
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~--~~~~~~~ 216 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL--HPEFISM 216 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC--CHHHHHH
Confidence 99999999999999999999999987643 7899999999999865 999999965 7999999999874 3445555
Q ss_pred H
Q 039402 1479 V 1479 (1496)
Q Consensus 1479 ~ 1479 (1496)
+
T Consensus 217 ~ 217 (251)
T PRK09544 217 F 217 (251)
T ss_pred h
Confidence 4
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=343.52 Aligned_cols=198 Identities=31% Similarity=0.446 Sum_probs=165.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~yv 686 (1496)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 3 l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFG---DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEeEEEEEC---CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 78899999995 357999999999999999999999999999999999999999999999873 6899
Q ss_pred ccCCccCC-CcHHHHhccCCCC-------CHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHH
Q 039402 687 AQSPWIQS-GKIEDNILFGKEM-------NRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754 (1496)
Q Consensus 687 ~Q~~~i~~-~ti~eNI~~g~~~-------~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 754 (1496)
+|+|.++. .|++||+.++... +.+ +..+.++.+++. ....+...+||||||||++||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la 148 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-----------WLADRYPAQLSGGQRQRVALA 148 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-----------hhhhcChhhCCHHHHHHHHHH
Confidence 99998875 6999999986421 111 122233333332 233566789999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
||++.+|+++||||||++||+++.+.+.+ ++... .+ ++|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRR-WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999888865 44444 33 7999999999998765 99999999999999999988764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=313.81 Aligned_cols=193 Identities=25% Similarity=0.378 Sum_probs=167.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe---------------
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------------- 682 (1496)
|++++++..|.. ++++|+||||+|++||++-|+||||||||||+++|.++..|++|+|.++|.
T Consensus 2 I~f~~V~k~Y~~--g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCC--CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 688999999974 477999999999999999999999999999999999999999999999983
Q ss_pred -eEEEccCCccC-CCcHHHHhccCCC---CC----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 -KAYVAQSPWIQ-SGKIEDNILFGKE---MN----RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 -~~yv~Q~~~i~-~~ti~eNI~~g~~---~~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
+|+|+|+.-+. ..|+.||+.|... .. +++..++++..+|.+-...+| .+|||||||||+|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 69999999764 5699999999753 22 345556777788877666665 6899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEec
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 823 (1496)
|||+..+|++||-||||.+|||..+..|++-..+--..|.||+++|||.+.+.. --+++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999999986433334569999999999999887 5789999999998653
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=349.66 Aligned_cols=203 Identities=29% Similarity=0.447 Sum_probs=170.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~ 683 (1496)
.++++|++++|+....+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 488999999996432356999999999999999999999999999999999999999999999883 5
Q ss_pred EEEccCCc--cCCCcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHH
Q 039402 684 AYVAQSPW--IQSGKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754 (1496)
Q Consensus 684 ~yv~Q~~~--i~~~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 754 (1496)
+|++|+|. ++..|++|||.|+.. .++ ++..++++..++.+. ..+...+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDF-----------KEREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhH-----------hhCCcccCCHHHHHHHHHH
Confidence 89999984 566799999998742 232 234445555555432 2455689999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hC-CcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhc
Q 039402 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LS-SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
||++.+|+++||||||++||+.+.+.+.+ ++..+ .+ |+|+|++||+++.+..||+|++|++|+++..|+.+++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIK-TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999888865 45444 33 8999999999998877999999999999999999887654
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=339.70 Aligned_cols=226 Identities=25% Similarity=0.426 Sum_probs=187.0
Q ss_pred EEEEeEEeEeCCCC--CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-C----CccEEEECCeeCCCCChHH
Q 039402 1246 IDLLDLQVRYAPQM--PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-P----AAGQILIDGIDISLIGLHD 1318 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~--~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-p----~~G~I~IDG~dI~~i~l~~ 1318 (1496)
++++|+++.|.... -.+++||||++++||.+||||.|||||||+.++++|+++ | .+|+|.+||.|+.+++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997543 368999999999999999999999999999999999997 3 5799999999999999875
Q ss_pred Hh----cccEEEcccccc-ccc--chhhccC----CCCCC-c----HHHHHHHHHHcCCcHH---HHhccCCcccccccC
Q 039402 1319 LR----SRLSIIPQDPVM-FEG--TVRSNLD----PLEES-T----DEQIWEALDKCQLGDE---VRKKEGKLDSKVTEN 1379 (1496)
Q Consensus 1319 LR----~~i~iIpQdp~L-F~g--TIR~NLd----p~~~~-s----d~eI~~aL~~~~L~~~---i~~lp~gLdt~v~e~ 1379 (1496)
+| ++|++|||||.- |+- ||.+-+. -.... + .++..+.|+++++.+- +.+-|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 43 479999999841 221 3333331 11111 1 3457888999988753 23333
Q ss_pred CCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCC
Q 039402 1380 GENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHG 1456 (1496)
Q Consensus 1380 G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G 1456 (1496)
..||||||||+.||-||+.+|++||-||||++||..+.++|.+.|++.- .++|+|+|||++..+.. ||||.||.+|
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 5689999999999999999999999999999999999999999998876 48999999999999987 9999999999
Q ss_pred eEeEecChhhHhhcCCcHHHHHHHHH
Q 039402 1457 LIEEFDNPANLLENKSSSFSQLVAEY 1482 (1496)
Q Consensus 1457 ~IvE~g~p~~Ll~~~~s~F~~l~~~~ 1482 (1496)
+|||.|+.+++++++.--|.+..-.+
T Consensus 231 ~iVE~g~~~~i~~~P~HPYT~~Ll~s 256 (316)
T COG0444 231 RIVEEGPVEEIFKNPKHPYTRGLLNS 256 (316)
T ss_pred EEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 99999999999999887776554433
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=359.12 Aligned_cols=202 Identities=33% Similarity=0.457 Sum_probs=169.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEE
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~y 685 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|
T Consensus 2 ~L~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFG---RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 378999999995 357999999999999999999999999999999999999999999999883 699
Q ss_pred EccCCccCC-CcHHHHhccCCCC-------CH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 686 VAQSPWIQS-GKIEDNILFGKEM-------NR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 686 v~Q~~~i~~-~ti~eNI~~g~~~-------~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
|+|++.++. .|++|||.|+... +. ++..+.++..++. ....++..+|||||||||+|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-----------HLADRYPAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHHHHH
Confidence 999999986 5999999997431 21 1223334443332 22346778999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
||||+.+|+++|||||||+||+.+...+.+.+.+...+ ++|+|+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999998887654333333 7999999999998765 999999999999999999998765
Q ss_pred C
Q 039402 832 G 832 (1496)
Q Consensus 832 ~ 832 (1496)
.
T Consensus 228 p 228 (353)
T PRK10851 228 P 228 (353)
T ss_pred c
Confidence 3
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=337.14 Aligned_cols=198 Identities=51% Similarity=0.890 Sum_probs=177.3
Q ss_pred EEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC-----------------
Q 039402 619 DIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----------------- 681 (1496)
Q Consensus 619 ~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g----------------- 681 (1496)
.+.+++|.|+. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGS--GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 56788999863 35799999999999999999999999999999999999999999999966
Q ss_pred eeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 039402 682 TKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761 (1496)
Q Consensus 682 ~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 761 (1496)
.++|++|+|.+++.|++||+.++.+.+.++.+++++.+++.+.++.+|.|+++..++...+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 26899999999989999999987766666677888999998888889999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHH-HHHHHh-CCcEEEEEccCcCccccCCEEEEEeCCe
Q 039402 762 DIYLFDDPFSAVDAHTGSHLFQE-VLLGLL-SSKTVIYVTHQVEFLPAADLILVMKDGK 818 (1496)
Q Consensus 762 ~illLDep~saLD~~~~~~i~~~-~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~ 818 (1496)
+++||||||++||+.+...+.+. +++... +++|+|++||+.+.+..||++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999998888763 454443 4799999999999988899999999874
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=352.71 Aligned_cols=203 Identities=24% Similarity=0.393 Sum_probs=167.8
Q ss_pred EEEEeeEEEecCCC--CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC--------------
Q 039402 618 LDIVDGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------- 681 (1496)
Q Consensus 618 i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g-------------- 681 (1496)
++++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999996321 23699999999999999999999999999999999999999999999864
Q ss_pred -----------------------eeEEEccCC--ccCCCcHHHHhccCCC---CCHH----HHHHHHHHhchhhHHHhcc
Q 039402 682 -----------------------TKAYVAQSP--WIQSGKIEDNILFGKE---MNRE----RYNAVLDACSLKKDLEILS 729 (1496)
Q Consensus 682 -----------------------~~~yv~Q~~--~i~~~ti~eNI~~g~~---~~~~----~~~~v~~~~~l~~d~~~l~ 729 (1496)
.++||+|+| .++..|++|||.|+.. .+++ +..++++.++|..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----- 157 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES----- 157 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh-----
Confidence 158999986 5677899999998742 2322 23344444444321
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCccc-c
Q 039402 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLP-A 807 (1496)
Q Consensus 730 ~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~ 807 (1496)
..++...+||||||||++|||||+.+|+++||||||++||+.....+.+. +..+ .+|+|||+|||+++++. .
T Consensus 158 -----~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 158 -----YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEI-FDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -----hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeeCHHHHHHh
Confidence 23467789999999999999999999999999999999999998888654 4443 45899999999999875 4
Q ss_pred CCEEEEEeCCeEEEecChHHHHhc
Q 039402 808 ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 808 ~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
||+|++|++|++++.|+.+++...
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999887653
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=360.59 Aligned_cols=203 Identities=31% Similarity=0.441 Sum_probs=171.3
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCc--cEEEEcCe-----------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS--GTLKLCGT----------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~--G~i~~~g~----------- 682 (1496)
..++++|++++|. ++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++ |+|.++|.
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYG---ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEEC---CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 4689999999996 3579999999999999999999999999999999999999999 99999884
Q ss_pred eEEEccCCccCCC-cHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHH
Q 039402 683 KAYVAQSPWIQSG-KIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754 (1496)
Q Consensus 683 ~~yv~Q~~~i~~~-ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 754 (1496)
++||+|++.+|.. |++|||.|+.. ..+ ++.+++++..+|.+ ...++..+|||||||||+||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGD-----------AAAHLPAQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc-----------hhhCChhhCCHHHHHHHHHH
Confidence 6999999998854 99999998742 222 22333444444432 23566789999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS--SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
|||..+|+++|||||||+||+.....+.+.+.+...+ |.|+|+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999887654433333 7899999999998765 999999999999999999999765
Q ss_pred C
Q 039402 832 G 832 (1496)
Q Consensus 832 ~ 832 (1496)
.
T Consensus 230 p 230 (362)
T TIGR03258 230 P 230 (362)
T ss_pred c
Confidence 3
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=341.01 Aligned_cols=203 Identities=26% Similarity=0.341 Sum_probs=169.4
Q ss_pred EEEEeEEeEeCCC--CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC---CCccEEEECCeeCCCCChHHHh
Q 039402 1246 IDLLDLQVRYAPQ--MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE---PAAGQILIDGIDISLIGLHDLR 1320 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~--~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e---p~~G~I~IDG~dI~~i~l~~LR 1320 (1496)
++|+||+++|+.. .+++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999765 3679999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cccEEEccccccccc-chhhccCCC---C--CCcHH-----HHHH-HHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 039402 1321 SRLSIIPQDPVMFEG-TVRSNLDPL---E--ESTDE-----QIWE-ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1321 ~~i~iIpQdp~LF~g-TIR~NLdp~---~--~~sd~-----eI~~-aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
++++++||++.+|.+ |+++|+... . ...++ .+.+ .++..++. ........+||+|||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT-----------RIGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcch-----------hhhcccccCcCHHHH
Confidence 899999999999988 999999631 1 11111 1122 34444332 222334568999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCc-chh-cccCEEEEEeCCeEeEec
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRI-TSV-IDSDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl-~ti-~~~DrIlVL~~G~IvE~g 1462 (1496)
||++||||++++|+||||||||++||+.+...+.+.|++.. +++|+|+++|++ ..+ ..||+|++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999864 468999999998 355 459999999999999875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=322.23 Aligned_cols=215 Identities=25% Similarity=0.398 Sum_probs=184.7
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH-Hhcc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-LRSR 1322 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~ 1322 (1496)
+.+..+|+..+|... .|++|+||++++||.||+.||+||||||.+..+.|++.|++|+|.+||.||+.++.+. -|-.
T Consensus 3 ~~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 467889999999754 5999999999999999999999999999999999999999999999999999999987 5778
Q ss_pred cEEEccccccccc-chhhccCCCCCCcH---------HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1323 LSIIPQDPVMFEG-TVRSNLDPLEESTD---------EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1323 i~iIpQdp~LF~g-TIR~NLdp~~~~sd---------~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
|||+||||.+|.+ ||++||...-+..+ +++.+-|+..++... -...|..||||||+|+-
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hl-----------r~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHL-----------RDSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHH-----------hcCcccccccchHHHHH
Confidence 9999999999988 99999964322221 223344554444322 22346789999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcc-hhcccCEEEEEeCCeEeEecChhhHhhc
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRIT-SVIDSDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~-ti~~~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
|||||..+|+.++||||.|++||.+-..||+.|+..- ++--|++.-|... |+.-|||.+++.+|+|...|+|+++.++
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999999999998764 4678999999985 5566999999999999999999999987
Q ss_pred C
Q 039402 1471 K 1471 (1496)
Q Consensus 1471 ~ 1471 (1496)
+
T Consensus 230 ~ 230 (243)
T COG1137 230 E 230 (243)
T ss_pred h
Confidence 5
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=335.01 Aligned_cols=190 Identities=24% Similarity=0.293 Sum_probs=162.2
Q ss_pred eEEEEeEEeEeCCC--CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC---CCccEEEECCeeCCCCChHHH
Q 039402 1245 KIDLLDLQVRYAPQ--MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE---PAAGQILIDGIDISLIGLHDL 1319 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~--~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e---p~~G~I~IDG~dI~~i~l~~L 1319 (1496)
.+.++||+|.|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999753 4579999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hcccEEEccccccccc-chhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc
Q 039402 1320 RSRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL 1398 (1496)
Q Consensus 1320 R~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL 1398 (1496)
|++++++||++.+|.+ |+++|+...... . . .+....||+|||||++||||++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~--------------~----~~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC---------K--------------G----NEFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh---------c--------------c----ccchhhCCHHHHHHHHHHHHHh
Confidence 8899999999988875 999999642110 0 1 2233579999999999999999
Q ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEc-cCcchhc-ccCEEEEEeCCeEeEec
Q 039402 1399 KRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIA-HRITSVI-DSDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1399 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IA-HRl~ti~-~~DrIlVL~~G~IvE~g 1462 (1496)
++|+||+|||||+++|+++.+.+.+.|++..+ ++|+|+++ |+.+.+. .||+|++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999998654 46766655 5556665 59999999999999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=343.47 Aligned_cols=203 Identities=23% Similarity=0.336 Sum_probs=165.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------e
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------K 683 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------------~ 683 (1496)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFG---GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEEC---CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 35789999995 356999999999999999999999999999999999999999999999872 6
Q ss_pred EEEccCCccCCC-cHHHHhccCCCCC-------------HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHH
Q 039402 684 AYVAQSPWIQSG-KIEDNILFGKEMN-------------RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 749 (1496)
Q Consensus 684 ~yv~Q~~~i~~~-ti~eNI~~g~~~~-------------~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 749 (1496)
+|++|++.++.. |++||+.++.... .+...+ ...+.++.+ |.....+.+..+|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARE-----RAEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHH-----HHHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 899999988775 9999998764211 111111 112223333 2233456778899999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHH
Q 039402 750 RIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 828 (1496)
|++||||++.+|+++||||||++||+.+...+++.+.....+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999999988876443333368999999999999865 999999999999999998887
Q ss_pred Hh
Q 039402 829 IN 830 (1496)
Q Consensus 829 ~~ 830 (1496)
..
T Consensus 231 ~~ 232 (236)
T cd03219 231 RN 232 (236)
T ss_pred cc
Confidence 54
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=341.40 Aligned_cols=195 Identities=30% Similarity=0.455 Sum_probs=162.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCC-----CCCccEEEEcCe----------
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV-----PKISGTLKLCGT---------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~-----~~~~G~i~~~g~---------- 682 (1496)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|.+ +|++|+|.++|.
T Consensus 1 i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 46889999985 357999999999999999999999999999999999999 999999999873
Q ss_pred -----eEEEccCCccCCCcHHHHhccCCCC----C----HHHHHHHHHHhchhhHHHhccCCCcccccCC--CCCCChHH
Q 039402 683 -----KAYVAQSPWIQSGKIEDNILFGKEM----N----RERYNAVLDACSLKKDLEILSFGDQTVIGER--GINLSGGQ 747 (1496)
Q Consensus 683 -----~~yv~Q~~~i~~~ti~eNI~~g~~~----~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~--g~~LSGGQ 747 (1496)
++|++|++.+++.|++||+.++... . +++..++++.+++.+.. .++ +.+|||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~~LSgG~ 146 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEV-----------KDRLHALGLSGGQ 146 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHH-----------hccCCcccCCHHH
Confidence 5899999998888999999875321 1 12333444444443322 223 57999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChH
Q 039402 748 KQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 826 (1496)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 826 (1496)
|||++||||++.+|+++||||||++||+.+...+++ ++....+.+|+|++||+++++.. ||++++|++|++++.|+.+
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEE-LIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcc
Confidence 999999999999999999999999999999988875 44444334899999999998765 9999999999999998875
Q ss_pred H
Q 039402 827 D 827 (1496)
Q Consensus 827 ~ 827 (1496)
+
T Consensus 226 ~ 226 (227)
T cd03260 226 Q 226 (227)
T ss_pred c
Confidence 4
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=334.83 Aligned_cols=216 Identities=27% Similarity=0.416 Sum_probs=190.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCe---eCCCCChHHHhc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI---DISLIGLHDLRS 1321 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~---dI~~i~l~~LR~ 1321 (1496)
.|+++|++..|+.- ++++|||++|+.||.+|+.|+||||||||+++|.|+..|++|+|.+||. |.+++.. -.+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~--~~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAV--RDR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccch--hhc
Confidence 37788888888643 5899999999999999999999999999999999999999999999999 8777443 346
Q ss_pred ccEEEccccccccc-chhhccCCCC---------CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 039402 1322 RLSIIPQDPVMFEG-TVRSNLDPLE---------ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1391 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~g-TIR~NLdp~~---------~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll 1391 (1496)
+||+|.|+.-||.- ||++|+...- ...+..+.+-|+.|+|...-...| .+||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence 79999999999865 9999997432 123456777799999987766666 46799999999
Q ss_pred HHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1392 CLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1392 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
+|||||.-.|++|+||||.++||.+-.+.+++-+++.. -++|+++|||+.+.+.. ||||+||++|+|...|+|+|..
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 99999999999999999999999999999999998765 37899999999988876 9999999999999999999999
Q ss_pred hcCCcHH
Q 039402 1469 ENKSSSF 1475 (1496)
Q Consensus 1469 ~~~~s~F 1475 (1496)
..+++.|
T Consensus 227 ~~P~s~f 233 (345)
T COG1118 227 DHPASRF 233 (345)
T ss_pred cCCCccc
Confidence 9998877
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=330.90 Aligned_cols=172 Identities=27% Similarity=0.473 Sum_probs=157.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCCh-HHHhccc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL-HDLRSRL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-~~LR~~i 1323 (1496)
.|+++|++++| +|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999999 8999999999999999999999999999999999999999999999999988874 4568899
Q ss_pred EEEcccc----cccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1324 SIIPQDP----VMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1324 ~iIpQdp----~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
+++||+| .++..|+++|+..... ||+|||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 3445799999864211 89999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeE
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLI 1458 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~I 1458 (1496)
+|++|+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999864 47899999999999987 999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=361.83 Aligned_cols=201 Identities=30% Similarity=0.428 Sum_probs=169.6
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEE
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~y 685 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|
T Consensus 3 ~l~i~~l~~~~~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 478999999995 357999999999999999999999999999999999999999999999873 699
Q ss_pred EccCCccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 686 VAQSPWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 686 v~Q~~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
|+|++.++. .|++|||.|+.. .+. ++..++++.+++.+ .......+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-----------~~~~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH-----------LLDRKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHH
Confidence 999999885 599999998743 222 23344444444432 23456789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
+.+|+++|||||||+||+.+...+.+.+.+...+ ++|+|+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999998887654333333 8999999999998765 999999999999999999998754
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=333.40 Aligned_cols=182 Identities=27% Similarity=0.417 Sum_probs=161.6
Q ss_pred eEEEEeEEeEeCCC----CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc--CCCccEEEECCeeCCCCChHH
Q 039402 1245 KIDLLDLQVRYAPQ----MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV--EPAAGQILIDGIDISLIGLHD 1318 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~----~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~ 1318 (1496)
.|+++||+++|+.. ..++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++.. .+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999752 246999999999999999999999999999999999999 9999999999999875 36
Q ss_pred HhcccEEEccccccccc-chhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1319 LRSRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1319 LR~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+|++++++||++.+|.+ |+++|+... . +.. .||+|||||++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~---------~---~~~---------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFA---------A---KLR---------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHH---------H---Hhc---------------------cCCHHHHHHHHHHHHH
Confidence 78899999999998875 999998421 0 000 7999999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcc-hhcc-cCEEEEEeCCeEeEec
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRIT-SVID-SDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~-ti~~-~DrIlVL~~G~IvE~g 1462 (1496)
+++|++++|||||++||..+.+.+.+.|++.. +++|+|+|+|+++ .+.+ ||+|++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999865 4789999999997 4544 9999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=351.38 Aligned_cols=204 Identities=25% Similarity=0.457 Sum_probs=168.0
Q ss_pred cEEEEeeEEEecCCC--CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------
Q 039402 617 ALDIVDGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------ 682 (1496)
.++++|++++|+... .+++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 247999999999999999999999999999999999999999999999872
Q ss_pred -----eEEEccCC--ccCCCcHHHHhccCCC---CCHHHH----HHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 -----KAYVAQSP--WIQSGKIEDNILFGKE---MNRERY----NAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 -----~~yv~Q~~--~i~~~ti~eNI~~g~~---~~~~~~----~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++||+|+| .++..|++|||.|+.. .+.++. .+.++.+++.. ...++.+.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR----------DVMSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHH
Confidence 58999997 5777899999998742 233222 22333333321 123567889999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCccc-cCCEEEEEeCCeEEEecCh
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKY 825 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~ 825 (1496)
||++|||||+.+|+++||||||++||+.+...+.+ +++.+ . .|+|+|+|||+++++. .||+|++|++|++++.|++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMR-LLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999988865 45443 3 4899999999999876 5999999999999999999
Q ss_pred HHHHhc
Q 039402 826 NDLINS 831 (1496)
Q Consensus 826 ~~l~~~ 831 (1496)
+++.+.
T Consensus 231 ~~~~~~ 236 (286)
T PRK13646 231 KELFKD 236 (286)
T ss_pred HHHHhC
Confidence 887653
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=337.55 Aligned_cols=192 Identities=33% Similarity=0.447 Sum_probs=158.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~yv 686 (1496)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeC---CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 36789999995 357999999999999999999999999999999999999999999999873 6899
Q ss_pred ccCCccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 039402 687 AQSPWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 758 (1496)
Q Consensus 687 ~Q~~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 758 (1496)
+|++.++. .|++||+.++.. .+. ++..+.++.+++.+ ...+...+||||||||++|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG-----------LLNRYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhcChhhCCHHHHHHHHHHHHHh
Confidence 99998775 699999987632 122 22333444444432 234566899999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEec
Q 039402 759 QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823 (1496)
Q Consensus 759 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 823 (1496)
.+|+++||||||++||+.+...+.+.+..... .++|+|++||+++++.. ||++++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999998888754433333 38999999999998765 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=347.56 Aligned_cols=208 Identities=26% Similarity=0.357 Sum_probs=176.5
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHh-ccc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR-SRL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR-~~i 1323 (1496)
.|+++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..+ +++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccceE
Confidence 59999999999643 459999999999999999999999999999999999999999999999998752 233 469
Q ss_pred EEEcccccc---cccchhhccCCC--------C---CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1324 SIIPQDPVM---FEGTVRSNLDPL--------E---ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1324 ~iIpQdp~L---F~gTIR~NLdp~--------~---~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
+|+||+|.+ +..++++|+... . ...++++.++++..++.+...+ . ..+||+||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~----~~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-------Q----IGELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC-------C----cccCCHHHHH
Confidence 999999865 456889987521 0 1123456788899888655432 2 2469999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhH
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
|++|||||+++|+||+|||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+++++ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999998864 47899999999998865 9999777 8999999999998
Q ss_pred hh
Q 039402 1468 LE 1469 (1496)
Q Consensus 1468 l~ 1469 (1496)
.+
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 74
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=314.81 Aligned_cols=213 Identities=25% Similarity=0.386 Sum_probs=184.5
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
+++.+++.+|.+ ...+++||||+++.||.+||.|+|||||||+++.|..++.|++|+|+|||+|+..-+ ...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcce
Confidence 688999999987 334899999999999999999999999999999999999999999999999998754 678999999
Q ss_pred Eccccccccc-chhhccCCCC---CCcHH----HHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1326 IPQDPVMFEG-TVRSNLDPLE---ESTDE----QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp~~---~~sd~----eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
++-+.-++.. |.||||..|+ +.++. ++-+.-++.++.+...+ .+ .+||-|+||+++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~r-------Rv----~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDR-------RV----GEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHH-------HH----hhhchhhHHHHHHHHHH
Confidence 9977667755 9999998664 23333 44555555666555433 23 45899999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEccCcchhc-ccCEEEEEeCCeEeEecChhhHhhcC
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHFS-DCTVLTIAHRITSVI-DSDLVLLLNHGLIEEFDNPANLLENK 1471 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~-~~TVI~IAHRl~ti~-~~DrIlVL~~G~IvE~g~p~~Ll~~~ 1471 (1496)
.++|+|+|||||||+||.-|...+++.|++... +++||.-+|-++.+. -||+|+++.+|+++..|++++|.++.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 999999999999999999999999999998764 899999999999998 49999999999999999999998753
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=340.04 Aligned_cols=201 Identities=27% Similarity=0.428 Sum_probs=169.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~ 683 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSF---GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 478999999985 357999999999999999999999999999999999999999999999873 6
Q ss_pred EEEccCCccCCCcHHHHhccCCCC---CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 684 AYVAQSPWIQSGKIEDNILFGKEM---NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 684 ~yv~Q~~~i~~~ti~eNI~~g~~~---~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
+|++|++.++..|++||+.++... ..++..+.++.+++.++. ..+...+||||||||++||||++.+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHHhcC
Confidence 899999999889999999876432 123444555555553221 2356789999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
|+++||||||++||+.+.+.+.+ ++... . .|+|+|++||+++++.. ||+|++|++|++++.|+.+++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEE-LIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 99999999999999999888765 44443 3 38999999999999875 999999999999999999888653
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=337.36 Aligned_cols=200 Identities=24% Similarity=0.361 Sum_probs=170.8
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC----ChHHHhc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI----GLHDLRS 1321 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~~LR~ 1321 (1496)
+++ ||+++|+.. .+ |+||+|++ |++||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|+
T Consensus 2 ~~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 2 LCV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred cee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 345 899999753 24 99999999 99999999999999999999999999999999999998643 2346788
Q ss_pred ccEEEccccccccc-chhhccCCC-CCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1322 RLSIIPQDPVMFEG-TVRSNLDPL-EES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~g-TIR~NLdp~-~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
+++++||++.+|.+ |+++|+... ..+ .++++.+++++.++.+... .....||+|||||++|||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~ 144 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-----------RYPAQLSGGEKQRVALAR 144 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-----------cCcccCCHHHHHHHHHHH
Confidence 99999999999864 999999632 111 2345777888887754433 334679999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEec
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g 1462 (1496)
|++++|+||+|||||++||+++.+.+.+.|++..+ ++|+|+|+|+++.+.+ ||+|++|++|++++.|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999998643 7899999999999865 9999999999999875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=340.75 Aligned_cols=206 Identities=25% Similarity=0.347 Sum_probs=172.0
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC----CccEEEECCeeCCCCChHHHhcccEEEccccc-ccc--
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP----AAGQILIDGIDISLIGLHDLRSRLSIIPQDPV-MFE-- 1334 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep----~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~-LF~-- 1334 (1496)
+|+|+||+|++||++||+|++|||||||+++|.|+++| ++|+|.+||.++... ...+++++++||+|. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998754 223468999999995 343
Q ss_pred cchhhccC-C---CCC---CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEE
Q 039402 1335 GTVRSNLD-P---LEE---STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLD 1407 (1496)
Q Consensus 1335 gTIR~NLd-p---~~~---~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLD 1407 (1496)
-|+.+|+. + ... ..++++.++++++++.+. +........+||+|||||++||||++++|+||+||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 48888863 1 111 123458888999888631 11223345679999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCcHHHH
Q 039402 1408 EATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFSQ 1477 (1496)
Q Consensus 1408 EaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~ 1477 (1496)
|||++||..+.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|++++++..+...|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999998653 6899999999999975 9999999999999999999998765555544
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=338.41 Aligned_cols=197 Identities=20% Similarity=0.326 Sum_probs=163.2
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC------------eeEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------TKAY 685 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g------------~~~y 685 (1496)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEEC---CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 46889999995 35799999999999999999999999999999999999999999999987 2689
Q ss_pred EccCCccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 686 VAQSPWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 686 v~Q~~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
++|++.++. .|++||+.++.. .+. ++..+.++.+++.+. ......+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEA-----------ADRLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhCCHHHHHHHHHHHHH
Confidence 999998776 499999987421 221 233444555544322 2345679999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHH
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 828 (1496)
+.+|+++||||||++||+++...+.+.+.....+ ++|+|++||+++++.. ||++++|++|++++.|+.+++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999988887544333344 7899999999999875 999999999999999887653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=321.98 Aligned_cols=164 Identities=29% Similarity=0.391 Sum_probs=151.2
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|+.+ +++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|. +++++
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5789999999644 45999999999999999999999999999999999999999999999983 68999
Q ss_pred EcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEE
Q 039402 1326 IPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILM 1405 (1496)
Q Consensus 1326 IpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILi 1405 (1496)
+||+|.++++|+++|+... ....||+|||||++||||++++|++++
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999642 236799999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCe
Q 039402 1406 LDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGL 1457 (1496)
Q Consensus 1406 LDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~ 1457 (1496)
|||||+++|+++.+.+.+.|++. ++|+|+++|+++....||+|++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999986 689999999999888899999999863
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=337.54 Aligned_cols=190 Identities=25% Similarity=0.408 Sum_probs=157.2
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe---------------
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------------- 682 (1496)
++++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6789999999522 246999999999999999999999999999999999999999999999873
Q ss_pred -eEEEccCCccCC-CcHHHHhccCCC---CC----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 -KAYVAQSPWIQS-GKIEDNILFGKE---MN----RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 -~~yv~Q~~~i~~-~ti~eNI~~g~~---~~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
++|++|++.++. .|++||+.++.. .+ +++..++++.+++.+. ..+...+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGK-----------AHALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHH
Confidence 589999998875 599999987521 11 2233444555554322 234567999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeE
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKI 819 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 819 (1496)
|||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|+|||+++++.. ||++++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999988876443333358999999999999875 999999999975
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=351.57 Aligned_cols=201 Identities=24% Similarity=0.412 Sum_probs=168.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------e
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------K 683 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------~ 683 (1496)
..++++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 6 ~~i~i~~l~k~~~---~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEEC---CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 4689999999995 357999999999999999999999999999999999999999999999873 6
Q ss_pred EEEccCCccCC-CcHHHHhccCCC---CCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHH
Q 039402 684 AYVAQSPWIQS-GKIEDNILFGKE---MNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 755 (1496)
Q Consensus 684 ~yv~Q~~~i~~-~ti~eNI~~g~~---~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR 755 (1496)
|||||++.++. .|++||+.|... .+.. +..++++.+++.+ ....+..+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-----------KADAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------HhcCchhhCCHHHHHHHHHHH
Confidence 99999998875 699999985321 1222 2223333333321 123456789999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 756 ALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 756 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
||+++|++++|||||++||+.+.+.+++. +..+ .+|+|+|++||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999988764 5444 358999999999999876 999999999999999999998644
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=347.29 Aligned_cols=199 Identities=29% Similarity=0.422 Sum_probs=167.1
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~ 683 (1496)
.++++|+++.|+. .+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 5889999999952 356999999999999999999999999999999999999999999999883 6
Q ss_pred EEEccCC--ccCCCcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHH
Q 039402 684 AYVAQSP--WIQSGKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754 (1496)
Q Consensus 684 ~yv~Q~~--~i~~~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 754 (1496)
+|++|+| .++..|++||+.|+.. .+. +++.++++.+++.+. ......+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDF-----------RDKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCChhhCCHHHHHHHHHH
Confidence 9999998 5778899999998642 222 234445555555432 2345679999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHH
Q 039402 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l 828 (1496)
|||+.+|+++||||||++||+.+...+.+.+.....+|+|+|++||+++++. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999998886544333345899999999999985 5999999999999999998654
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=331.65 Aligned_cols=181 Identities=27% Similarity=0.354 Sum_probs=160.5
Q ss_pred eEEEEeEEeEeCCC--CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc--CCCccEEEECCeeCCCCChHHHh
Q 039402 1245 KIDLLDLQVRYAPQ--MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV--EPAAGQILIDGIDISLIGLHDLR 1320 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~--~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~LR 1320 (1496)
.|+++|++++|++. ..++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 58999999999642 246999999999999999999999999999999999986 489999999999986 5678
Q ss_pred cccEEEccccccccc-chhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1321 SRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1321 ~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
++++++||+|.+|.+ |+++|+... ..++ +||+|||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~---------~~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS---------ALLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH---------HHHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999988875 999998621 0000 799999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcch-h-cccCEEEEEeC-CeEeEec
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITS-V-IDSDLVLLLNH-GLIEEFD 1462 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~t-i-~~~DrIlVL~~-G~IvE~g 1462 (1496)
+|++|+|||||+++|+++...+.+.|++.. +++|+|+|+|+++. + ..||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999864 47899999999984 4 56999999999 9999875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=341.04 Aligned_cols=197 Identities=34% Similarity=0.463 Sum_probs=163.7
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe---------------
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------------- 682 (1496)
++++|++++|+ .++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~--~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYP--NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecC--CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 67899999985 1357999999999999999999999999999999999999999999999872
Q ss_pred -eEEEccCCccCC-CcHHHHhccCCCC------------C---HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCCh
Q 039402 683 -KAYVAQSPWIQS-GKIEDNILFGKEM------------N---RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSG 745 (1496)
Q Consensus 683 -~~yv~Q~~~i~~-~ti~eNI~~g~~~------------~---~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 745 (1496)
++|++|++.++. .|++||+.++... . .++..++++.+++. ......+.+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-----------DKAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-----------hhhcCCcccCCH
Confidence 589999998875 6999999875321 1 11223333333332 233567789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEe
Q 039402 746 GQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQA 822 (1496)
Q Consensus 746 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 822 (1496)
|||||++||||++.+|+++||||||++||+.+...+.+ ++... . .++|+|++||+++++.. ||++++|++|++++.
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMD-YLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 99999999999999999999999999999999888865 44443 3 37999999999999864 999999999999999
Q ss_pred cChHHH
Q 039402 823 GKYNDL 828 (1496)
Q Consensus 823 G~~~~l 828 (1496)
|+++++
T Consensus 228 ~~~~~~ 233 (243)
T TIGR02315 228 GAPSEL 233 (243)
T ss_pred CCHHHh
Confidence 998875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=337.36 Aligned_cols=197 Identities=35% Similarity=0.465 Sum_probs=161.5
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC--------eeEEEcc
Q 039402 618 LDIVDGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------TKAYVAQ 688 (1496)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g--------~~~yv~Q 688 (1496)
++++|++++|+... .+++|+|+||+|++|++++|+||||||||||+++|+|.++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 36789999996311 15799999999999999999999999999999999999999999999987 3699999
Q ss_pred CCccCC-CcHHHHhccCCC---CC----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 689 SPWIQS-GKIEDNILFGKE---MN----RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 689 ~~~i~~-~ti~eNI~~g~~---~~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
++.++. .|++||+.++.. .+ .++..+.++.+++.+ ...+...+||||||||++||||++.+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSG-----------FENAYPHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 998876 699999987532 11 123334444444432 23455679999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCcccc-CCEEEEEe--CCeEEEecCh
Q 039402 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPA-ADLILVMK--DGKITQAGKY 825 (1496)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~--~G~i~~~G~~ 825 (1496)
|+++||||||++||+.+...+++.+.+... .++|+|++||+++++.. ||++++|+ +|++++.++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999988764433323 48999999999998765 99999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=343.31 Aligned_cols=205 Identities=27% Similarity=0.421 Sum_probs=170.3
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC-----CCccEEEEcC---------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG--------- 681 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~i~~~g--------- 681 (1496)
+.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEEC---CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 4689999999995 3579999999999999999999999999999999999864 5899999877
Q ss_pred ------eeEEEccCCccCCCcHHHHhccCCC---C-C----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHH
Q 039402 682 ------TKAYVAQSPWIQSGKIEDNILFGKE---M-N----RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQ 747 (1496)
Q Consensus 682 ------~~~yv~Q~~~i~~~ti~eNI~~g~~---~-~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 747 (1496)
.++|++|++.+++.|++||+.++.. . . +++.++.++.+++.+.+. +..++.+.+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 2689999999988899999987631 1 1 123334445444433221 23467788999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChH
Q 039402 748 KQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 826 (1496)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 826 (1496)
||||+||||++.+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++++.. ||++++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEE-LIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999888865 45555568999999999999865 9999999999999999998
Q ss_pred HHHhc
Q 039402 827 DLINS 831 (1496)
Q Consensus 827 ~l~~~ 831 (1496)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 88643
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=341.13 Aligned_cols=198 Identities=31% Similarity=0.419 Sum_probs=163.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe---------------
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------------- 682 (1496)
++++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 367899999852 257999999999999999999999999999999999999999999999872
Q ss_pred -eEEEccCCccCC-CcHHHHhccCCCC------------CH---HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCCh
Q 039402 683 -KAYVAQSPWIQS-GKIEDNILFGKEM------------NR---ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSG 745 (1496)
Q Consensus 683 -~~yv~Q~~~i~~-~ti~eNI~~g~~~------------~~---~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 745 (1496)
++|++|++.++. .|++||+.++... .+ ++..+.++..++ ....+..+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL-----------LDKAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCC-----------hhhhCCCcccCCH
Confidence 689999998776 6999999875321 11 112222333322 2234567889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCccc-cCCEEEEEeCCeEEEec
Q 039402 746 GQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLP-AADLILVMKDGKITQAG 823 (1496)
Q Consensus 746 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G 823 (1496)
|||||++||||++.+|+++||||||++||+.+...+.+.+..... .|+|+|++||+++.+. .||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999888764433333 3899999999999987 59999999999999999
Q ss_pred ChHHH
Q 039402 824 KYNDL 828 (1496)
Q Consensus 824 ~~~~l 828 (1496)
+++++
T Consensus 228 ~~~~~ 232 (241)
T cd03256 228 PPAEL 232 (241)
T ss_pred CHHHh
Confidence 98876
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=333.02 Aligned_cols=192 Identities=26% Similarity=0.362 Sum_probs=162.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~yv 686 (1496)
++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|..+|++|+|.++|. ++|+
T Consensus 1 l~~~~l~~~~~---~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEEC---CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 46889999995 357999999999999999999999999999999999999999999999873 6899
Q ss_pred ccCCccC-CCcHHHHhccCCC---CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 039402 687 AQSPWIQ-SGKIEDNILFGKE---MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762 (1496)
Q Consensus 687 ~Q~~~i~-~~ti~eNI~~g~~---~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1496)
+|++.++ +.|++||+.++.. .++++.+++++..++.+.. .+.+.+||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA-----------KKKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------hhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999877 5799999987532 2344555666666554332 35567999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEec
Q 039402 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823 (1496)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 823 (1496)
++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999888875443333358999999999999865 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=335.80 Aligned_cols=204 Identities=28% Similarity=0.456 Sum_probs=174.8
Q ss_pred CccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------
Q 039402 615 ETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1496)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------ 682 (1496)
...++++++++.|+.....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 34689999999996432347999999999999999999999999999999999999999999999873
Q ss_pred -eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 683 -KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 683 -~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
++|++|++.++..|++||+.++.. .....+.+..+...+.+.++.++.|..+..++++.+|||||||||+||||++++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 699999999998999999998653 222233333344456677888887888888999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeE
Q 039402 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKI 819 (1496)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 819 (1496)
|+++||||||++||+++...+.+ .+..+.+++|+|++||+++++..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQ-ALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999888865 45555557899999999999877999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=341.84 Aligned_cols=203 Identities=27% Similarity=0.417 Sum_probs=168.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCC-----ccEEEEcCe----------
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI-----SGTLKLCGT---------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~-----~G~i~~~g~---------- 682 (1496)
++++|++++|+ +.++++|+||+|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|.
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEEC---CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 68899999996 346999999999999999999999999999999999999998 999998762
Q ss_pred -----eEEEccCCccCCCcHHHHhccCCC----CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHH
Q 039402 683 -----KAYVAQSPWIQSGKIEDNILFGKE----MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 749 (1496)
Q Consensus 683 -----~~yv~Q~~~i~~~ti~eNI~~g~~----~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 749 (1496)
++|++|+++++..|++||+.++.. .+. ++..++++..++.++++ ...+....+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 689999999988999999987532 121 22333444444432221 2345677899999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHH
Q 039402 750 RIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 828 (1496)
|++||||++.+|+++||||||++||+.+...+++ ++....+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEE-LIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999888865 55555556899999999998865 999999999999999999887
Q ss_pred Hhc
Q 039402 829 INS 831 (1496)
Q Consensus 829 ~~~ 831 (1496)
...
T Consensus 231 ~~~ 233 (247)
T TIGR00972 231 FTN 233 (247)
T ss_pred HhC
Confidence 643
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=333.56 Aligned_cols=187 Identities=31% Similarity=0.508 Sum_probs=157.5
Q ss_pred EEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe----------eEEEccC
Q 039402 620 IVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----------KAYVAQS 689 (1496)
Q Consensus 620 ~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~----------~~yv~Q~ 689 (1496)
++|++++|+. .+++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|. ++|++|+
T Consensus 2 ~~~l~~~~~~--~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKK--GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCC--cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 5788888852 157999999999999999999999999999999999999999999999883 6899999
Q ss_pred C--ccCCCcHHHHhccCCCC---CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 039402 690 P--WIQSGKIEDNILFGKEM---NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIY 764 (1496)
Q Consensus 690 ~--~i~~~ti~eNI~~g~~~---~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 764 (1496)
| .++..|++||+.++... ++++..++++.+++.+. ......+||||||||++||||++.+|+++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYAL-----------KERHPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchh-----------cCCCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 7 46678999999886432 23455566666665432 23456799999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEE
Q 039402 765 LFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKIT 820 (1496)
Q Consensus 765 lLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 820 (1496)
||||||++||+.+.+.+.+ .+... .+++|+|++||+++.+.. ||++++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGE-LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999888865 45444 468999999999999875 9999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=356.04 Aligned_cols=203 Identities=24% Similarity=0.347 Sum_probs=168.2
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 618 LDIVDGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
++++|++++|+..+ ++++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68899999996322 357999999999999999999999999999999999999999999999872
Q ss_pred --eEEEccCCccCC-CcHHHHhccCCC---CCHHH----HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 683 --KAYVAQSPWIQS-GKIEDNILFGKE---MNRER----YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 683 --~~yv~Q~~~i~~-~ti~eNI~~g~~---~~~~~----~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
++|++|++.++. .|++||+.++.. .+.+. ..+.++..++. ........+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-----------DKADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHHHH
Confidence 699999998875 699999987632 22222 22333333332 2335667899999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
|||||+++|+++||||||++||+.+...+.+.+.+... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999888754433323 38999999999999875 99999999999999999999875
Q ss_pred c
Q 039402 831 S 831 (1496)
Q Consensus 831 ~ 831 (1496)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 4
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=341.08 Aligned_cols=204 Identities=26% Similarity=0.388 Sum_probs=171.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC---CCccEEEEcCe-----------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP---KISGTLKLCGT----------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~---~~~G~i~~~g~----------- 682 (1496)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 2 ~~~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYG---KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEEC---CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 478899999995 3579999999999999999999999999999999999974 69999999873
Q ss_pred --eEEEccCCccCCCcHHHHhccCCCC---------CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 683 --KAYVAQSPWIQSGKIEDNILFGKEM---------NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 683 --~~yv~Q~~~i~~~ti~eNI~~g~~~---------~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
++|++|++.+++.|++||+.++... .+++..+.++.+++.+.+.. ...+++.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 6999999999999999999876321 11233455666666443321 23567789999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
+||||++++|+++||||||++||+.+...+.+ ++....+++|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEE-LLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999888765 55555568999999999998865 99999999999999999988764
Q ss_pred c
Q 039402 831 S 831 (1496)
Q Consensus 831 ~ 831 (1496)
.
T Consensus 231 ~ 231 (246)
T PRK14269 231 N 231 (246)
T ss_pred C
Confidence 3
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=342.10 Aligned_cols=212 Identities=22% Similarity=0.291 Sum_probs=178.7
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc--cCCCccEEEECCeeCCCCChHHHhc-
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI--VEPAAGQILIDGIDISLIGLHDLRS- 1321 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl--~ep~~G~I~IDG~dI~~i~l~~LR~- 1321 (1496)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++..++.+..++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4999999999964 3599999999999999999999999999999999998 6899999999999999888766554
Q ss_pred ccEEEccccccccc-chhhccCCC-C---------CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch
Q 039402 1322 RLSIIPQDPVMFEG-TVRSNLDPL-E---------EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1386 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~g-TIR~NLdp~-~---------~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~G 1386 (1496)
.++++||+|.+|.+ |+++|+... . +.+ .+++.++|+.+++.+.. ++..+. ..||+|
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LSgG 155 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSF------LSRNVN---EGFSGG 155 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhh------hccccc---cCCCHH
Confidence 58899999999987 889987421 1 011 13456778887775211 122221 249999
Q ss_pred HHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc--cCEEEEEeCCeEeEecC
Q 039402 1387 QRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID--SDLVLLLNHGLIEEFDN 1463 (1496)
Q Consensus 1387 QrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~--~DrIlVL~~G~IvE~g~ 1463 (1496)
||||++||||++++|+||||||||++||..+...+.+.|++.. +++|||+++|+++.+.. ||+|++|++|++++.|+
T Consensus 156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (252)
T CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999865 47999999999999875 89999999999999999
Q ss_pred hhhH
Q 039402 1464 PANL 1467 (1496)
Q Consensus 1464 p~~L 1467 (1496)
|+.+
T Consensus 236 ~~~~ 239 (252)
T CHL00131 236 AELA 239 (252)
T ss_pred hhhh
Confidence 9844
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=347.09 Aligned_cols=203 Identities=25% Similarity=0.436 Sum_probs=167.6
Q ss_pred cEEEEeeEEEecCCC--CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------
Q 039402 617 ALDIVDGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------ 682 (1496)
.++++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999996321 257999999999999999999999999999999999999999999999873
Q ss_pred -----eEEEccCC--ccCCCcHHHHhccCCC---CCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 -----KAYVAQSP--WIQSGKIEDNILFGKE---MNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 -----~~yv~Q~~--~i~~~ti~eNI~~g~~---~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++|++|+| .++..|++|||.++.. .+.+ +..++++.+++..+ ....+..+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED----------LISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhhCCcccCCHHHH
Confidence 58999998 4677899999987532 2222 22334444444211 23466789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 826 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 826 (1496)
||++||||++.+|+++||||||++||+.+...+.+ ++..+ .+|+|+|++||+++.+.. ||++++|++|++++.|+.+
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQ-LFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999888865 45544 358999999999999865 9999999999999999998
Q ss_pred HHHh
Q 039402 827 DLIN 830 (1496)
Q Consensus 827 ~l~~ 830 (1496)
++..
T Consensus 231 ~~~~ 234 (287)
T PRK13641 231 EIFS 234 (287)
T ss_pred HHhc
Confidence 8754
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=326.00 Aligned_cols=177 Identities=33% Similarity=0.512 Sum_probs=161.5
Q ss_pred EEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEE
Q 039402 1247 DLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSII 1326 (1496)
Q Consensus 1247 ~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iI 1326 (1496)
+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++++
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 57899999964 4599999999999999999999999999999999999999999999999999988888889999999
Q ss_pred cccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEE
Q 039402 1327 PQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILML 1406 (1496)
Q Consensus 1327 pQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiL 1406 (1496)
|| +++.+++.+.+.+ .+.+||+|||||++||||++++|+++||
T Consensus 79 ~q--------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 7888888765543 3467999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEec
Q 039402 1407 DEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1407 DEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g 1462 (1496)
||||++||+++.+.+.+.|++..+ ++|+|+++|+++.+.+ ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999988754 6899999999999855 9999999999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=356.84 Aligned_cols=203 Identities=29% Similarity=0.425 Sum_probs=170.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eE
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 684 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~ 684 (1496)
..++++|++++|. +.++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|. ++
T Consensus 18 ~~l~l~~v~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 18 PLLEIRNLTKSFD---GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred ceEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 4699999999995 357999999999999999999999999999999999999999999999984 69
Q ss_pred EEccCCccCCC-cHHHHhccCCC---CCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH
Q 039402 685 YVAQSPWIQSG-KIEDNILFGKE---MNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 756 (1496)
Q Consensus 685 yv~Q~~~i~~~-ti~eNI~~g~~---~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 756 (1496)
||+|++.+|.. |+.|||.|+.. .+.. +..+.++..++. .....+..+|||||||||+||||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-----------~~~~~~~~~LSgGq~QRVaLARA 163 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-----------EFAKRKPHQLSGGQRQRVALARS 163 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999865 99999998743 2222 223333333332 22346678999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 757 LYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
|+.+|+++|||||||+||+.....+.+.+.+... .+.|+|+|||+.+++. .||+|++|++|++++.|+++++....
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999888765444333 3899999999999865 49999999999999999999987653
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=334.61 Aligned_cols=193 Identities=26% Similarity=0.377 Sum_probs=165.6
Q ss_pred EEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCCh----HHHhccc
Q 039402 1248 LLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL----HDLRSRL 1323 (1496)
Q Consensus 1248 f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l----~~LR~~i 1323 (1496)
++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++.+.. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4689999964 359999999999999999999999999999999999999999999999999875542 2467889
Q ss_pred EEEcccccccc-cchhhccCCC---C----CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1324 SIIPQDPVMFE-GTVRSNLDPL---E----ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1324 ~iIpQdp~LF~-gTIR~NLdp~---~----~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
+++||+|.+|. .|+++|+... . ...++++.++++..++.+...+ ...+||+|||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ-----------KIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999997 6999999631 1 1124567788888887544322 23579999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEE
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLL 1453 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL 1453 (1496)
||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+++|+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999999865 378999999999988889999986
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=334.96 Aligned_cols=199 Identities=27% Similarity=0.426 Sum_probs=163.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------e
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------K 683 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------------~ 683 (1496)
++++|++++|+ ++++++|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecC---CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 46789999985 357999999999999999999999999999999999999999999999872 6
Q ss_pred EEEccCCccCCC-cHHHHhccCCCCC--H---HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 684 AYVAQSPWIQSG-KIEDNILFGKEMN--R---ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 684 ~yv~Q~~~i~~~-ti~eNI~~g~~~~--~---~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
+|++|++.++.. |++||+.++.... . ++..++++.. ..+ ....+.++.+||||||||++||||+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l----~~~~~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRL----KERRKQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhh----hhhhhCchhhCCHHHHHHHHHHHHH
Confidence 899999988775 9999998864321 1 1112222222 111 1223567789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHH
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLI 829 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~ 829 (1496)
+.+|+++||||||++||+.+...+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999888875443333358999999999998765 9999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=328.74 Aligned_cols=189 Identities=24% Similarity=0.421 Sum_probs=162.7
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..+++++++++|+.. .+++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999632 247999999999999999999999999999999999999999999999873
Q ss_pred eEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 039402 683 KAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762 (1496)
Q Consensus 683 ~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1496)
++||+|+|.++++|++||+.+...++.++.. +.+. +++++.+||||||||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~---~~l~---------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIY---GALR---------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHH---HHhh---------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 6999999999999999999876544433222 2211 356788999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecC
Q 039402 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGK 824 (1496)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~ 824 (1496)
++||||||++||+.+...+.+ .++...+++|+|++||+++.+..||++++|++|++.+.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQK-TIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 999999999999999887765 4555556899999999999987799999999999998775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=334.99 Aligned_cols=198 Identities=26% Similarity=0.449 Sum_probs=165.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------eEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------KAY 685 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------~~y 685 (1496)
++++|+++.|+.. .+++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|. ++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4678999998521 257999999999999999999999999999999999999999999999874 589
Q ss_pred EccCCccC-CCcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 686 VAQSPWIQ-SGKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 686 v~Q~~~i~-~~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
++|++.++ ..|++||+.++.. ... ++..++++.+++.+. .+....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK-----------ANKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhChhhhCCHHHHHHHHHHHHH
Confidence 99999887 5799999987421 221 233444555544322 2345678999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHH
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 828 (1496)
+.+|+++||||||++||+.+.+.+.+ .+....+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWD-LILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999888865 45555557999999999999875 999999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=335.50 Aligned_cols=190 Identities=32% Similarity=0.455 Sum_probs=156.3
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC---------------
Q 039402 618 LDIVDGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 681 (1496)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g--------------- 681 (1496)
++++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46789999996321 15799999999999999999999999999999999999999999999876
Q ss_pred --eeEEEccCCccCCC-cHHHHhccCCCC---CH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 682 --TKAYVAQSPWIQSG-KIEDNILFGKEM---NR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 682 --~~~yv~Q~~~i~~~-ti~eNI~~g~~~---~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
.++|++|++.++.. |++||+.++... +. ++..++++..++. ....+...+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG-----------DRLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhcChhhcCHHHHHHH
Confidence 26899999988875 999999886431 11 2233334443332 233566789999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCccccCCEEEEEeCCeE
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPAADLILVMKDGKI 819 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i 819 (1496)
+||||++.+|+++||||||++||+.+...+.+ ++... . .++|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVME-LLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999888865 44444 3 38999999999998878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=343.42 Aligned_cols=202 Identities=30% Similarity=0.470 Sum_probs=170.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~ 683 (1496)
.++++|+++.|+. ..+++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|. +
T Consensus 5 ~l~~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 5899999999952 2357999999999999999999999999999999999999999999999883 5
Q ss_pred EEEccCC--ccCCCcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHH
Q 039402 684 AYVAQSP--WIQSGKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754 (1496)
Q Consensus 684 ~yv~Q~~--~i~~~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 754 (1496)
+|++|+| .+++.|++|||.++.. .+. ++..++++.++|.+.+ .....+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFL-----------NREPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhh-----------hCCcccCCHHHHHHHHHH
Confidence 8999998 4667899999988632 222 2344455555554333 355679999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-C-CcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhc
Q 039402 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-S-SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
||++.+|+++||||||++||+.+...+++. +..+. + ++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLET-VRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999888754 44443 3 8999999999998878999999999999999999887653
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=340.37 Aligned_cols=204 Identities=26% Similarity=0.398 Sum_probs=169.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC-----CccEEEEcCe---------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCGT--------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~i~~~g~--------- 682 (1496)
.++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.
T Consensus 7 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeC---CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 689999999995 35799999999999999999999999999999999999987 5899998762
Q ss_pred ------eEEEccCCccCCCcHHHHhccCCCC----CH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 ------KAYVAQSPWIQSGKIEDNILFGKEM----NR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 ------~~yv~Q~~~i~~~ti~eNI~~g~~~----~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++|++|++.+++.|++|||.++... +. ++..++++.+++.+.+. .....++.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcccCCHHHH
Confidence 5899999999889999999986421 21 22233444444422111 123457789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 827 (1496)
||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++++.. ||+|++|++|++++.|++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEE-LIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999988875 55555567999999999999765 99999999999999999998
Q ss_pred HHhc
Q 039402 828 LINS 831 (1496)
Q Consensus 828 l~~~ 831 (1496)
+.++
T Consensus 236 ~~~~ 239 (254)
T PRK14273 236 LFFN 239 (254)
T ss_pred HHhC
Confidence 8654
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=343.24 Aligned_cols=200 Identities=29% Similarity=0.446 Sum_probs=166.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------e
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------K 683 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------------~ 683 (1496)
++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 678999999952 356999999999999999999999999999999999999999999999873 5
Q ss_pred EEEccCCc--cCCCcHHHHhccCCC---CCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHH
Q 039402 684 AYVAQSPW--IQSGKIEDNILFGKE---MNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754 (1496)
Q Consensus 684 ~yv~Q~~~--i~~~ti~eNI~~g~~---~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 754 (1496)
+|++|+|. +++.|++|||.++.. .+.+ +..++++.+++.. .....+.+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEK-----------YRHRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-----------HhcCCcccCCHHHHHHHHHH
Confidence 89999986 467899999988642 2222 2333344444432 23556789999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHh
Q 039402 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
||++.+|+++||||||++||+.+...+++.+.....+|+|+|++||+++.++.||+|++|++|++++.|+.+++..
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999988887644332335899999999999987799999999999999999988754
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=333.64 Aligned_cols=189 Identities=31% Similarity=0.495 Sum_probs=155.8
Q ss_pred EEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------eEEEccCCc
Q 039402 620 IVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAYVAQSPW 691 (1496)
Q Consensus 620 ~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------~~yv~Q~~~ 691 (1496)
++|++++|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.
T Consensus 2 ~~~l~~~~~---~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYG---GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEEC---CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 578888885 256999999999999999999999999999999999999999999999984 799999987
Q ss_pred c---CCCcHHHHhccCCCC-----------CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 692 I---QSGKIEDNILFGKEM-----------NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 692 i---~~~ti~eNI~~g~~~-----------~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
+ ++.|++||+.++... .+++.+++++.+++.+.. .....+||||||||++||||+
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELA-----------DRQIGELSGGQQQRVLLARAL 147 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHH-----------hCCcccCCHHHHHHHHHHHHH
Confidence 6 457999999876421 122344455555554322 345679999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEec
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 823 (1496)
+.+|+++||||||++||+.+...+.+.+.+...+++|+|++||+++++.. ||++++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999988876443333368999999999999865 9999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=336.48 Aligned_cols=203 Identities=24% Similarity=0.411 Sum_probs=166.7
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------eEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------KAY 685 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------~~y 685 (1496)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|. ++|
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYG---ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 67899999995 357999999999999999999999999999999999999999999999873 689
Q ss_pred EccCCcc-CCCcHHHHhccCCC---CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 039402 686 VAQSPWI-QSGKIEDNILFGKE---MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761 (1496)
Q Consensus 686 v~Q~~~i-~~~ti~eNI~~g~~---~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 761 (1496)
++|++.+ +..|++||+.++.. ...+...+. ..+.++.+ |.....++++.+||||||||++||||++.+|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARER-----IAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999987 56799999987532 222211111 11112222 2233356778899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHh--CCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhc
Q 039402 762 DIYLFDDPFSAVDAHTGSHLFQEVLLGLL--SSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 762 ~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
+++||||||++||+.+...+.+. +..+. +++|+|++||+++.+..||++++|++|++++.|+.+++.++
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAH-VRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999988764 44443 48999999999999878999999999999999998887654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=339.81 Aligned_cols=206 Identities=24% Similarity=0.336 Sum_probs=176.4
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
++++||+++ .+|+|+||+|++||++||+|+||||||||+++|.|+++ .+|+|.+||.++...+..++|+.+++
T Consensus 1 ~~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 1 MQLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred Ccccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEE
Confidence 356788875 27999999999999999999999999999999999985 59999999999998888888889999
Q ss_pred Eccccc-ccccchhhccCCCCC-C-c----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc
Q 039402 1326 IPQDPV-MFEGTVRSNLDPLEE-S-T----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL 1398 (1496)
Q Consensus 1326 IpQdp~-LF~gTIR~NLdp~~~-~-s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL 1398 (1496)
+||+|. .+..|+++|+..... . + ++++.++++..++.+...+ ....||+|||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGR-----------SVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHh
Confidence 999985 456799999974321 1 1 3456777888777544322 34579999999999999999
Q ss_pred c-------CCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1399 K-------RSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1399 r-------~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
+ +|++|||||||++||+.+...+.+.|++.. +++|||+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 7 679999999999999999999999998865 46899999999998765 99999999999999999999874
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=338.53 Aligned_cols=196 Identities=31% Similarity=0.380 Sum_probs=165.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------eEEEc
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAYVA 687 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------~~yv~ 687 (1496)
..++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|. ++|++
T Consensus 11 ~~l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYG---ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 3589999999995 357999999999999999999999999999999999999999999999873 69999
Q ss_pred cCCccCC-CcHHHHhccCCCC-CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 039402 688 QSPWIQS-GKIEDNILFGKEM-NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYL 765 (1496)
Q Consensus 688 Q~~~i~~-~ti~eNI~~g~~~-~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ill 765 (1496)
|++.++. .|++||+.++... .+++..+.++..++.+ ..++.+.+||||||||++||||++.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-----------RANEWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998876 6999999886421 2334445555555432 2356678999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChH
Q 039402 766 FDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 826 (1496)
Q Consensus 766 LDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 826 (1496)
|||||++||+.+...+.+. +..+ . .++|+|++||+++++.. ||+|++|++|++++.|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDL-IESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999998888654 4443 3 47999999999998765 9999999999999888653
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=336.86 Aligned_cols=202 Identities=25% Similarity=0.376 Sum_probs=164.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------e
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------K 683 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------------~ 683 (1496)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYG---KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeC---CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 46789999995 357999999999999999999999999999999999999999999999873 5
Q ss_pred EEEccCCccCCC-cHHHHhccCCC---CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 039402 684 AYVAQSPWIQSG-KIEDNILFGKE---MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQ 759 (1496)
Q Consensus 684 ~yv~Q~~~i~~~-ti~eNI~~g~~---~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~ 759 (1496)
+|++|++.++.. |++||+.++.+ ...+...+. +.+.++.+ |.....++...+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEK-----LEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 899999988775 99999987532 111111111 11122222 22233467778999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 760 DSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 760 ~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
+|+++||||||++||+.+.+.+.+ +++.. .+++|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQK-IIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999888875 44443 358999999999988765 99999999999999999887753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=356.87 Aligned_cols=200 Identities=24% Similarity=0.434 Sum_probs=169.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~ 683 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 478999999995 467999999999999999999999999999999999999999999999883 6
Q ss_pred EEEccCCcc-CCCcHHHHhccCCC-----C---C---HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 684 AYVAQSPWI-QSGKIEDNILFGKE-----M---N---RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 684 ~yv~Q~~~i-~~~ti~eNI~~g~~-----~---~---~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
+||+|++.+ ++.|++||+.++.. + . .++.+++++..++.+. ......+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~-----------~~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQF-----------ADRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHH
Confidence 999999987 57899999988742 1 1 2233444454444322 2456789999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHH
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLI 829 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~ 829 (1496)
+|||||+++|+++||||||++||+.+...+.+ +++.+ .+++|+|++||+++.+.. ||++++|++|++++.|++++++
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~-lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLE-LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999888865 44444 358999999999999865 9999999999999999999987
Q ss_pred hc
Q 039402 830 NS 831 (1496)
Q Consensus 830 ~~ 831 (1496)
..
T Consensus 228 ~~ 229 (402)
T PRK09536 228 TA 229 (402)
T ss_pred Cc
Confidence 54
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=335.90 Aligned_cols=196 Identities=27% Similarity=0.379 Sum_probs=162.4
Q ss_pred cEEEEeeEEEecCCC-CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC--------------
Q 039402 617 ALDIVDGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------- 681 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g-------------- 681 (1496)
.++++|+++.|+... .+++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 488999999996322 24799999999999999999999999999999999999999999999987
Q ss_pred ---eeEEEccCCccCCC-cHHHHhccCC---CCCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHH
Q 039402 682 ---TKAYVAQSPWIQSG-KIEDNILFGK---EMNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750 (1496)
Q Consensus 682 ---~~~yv~Q~~~i~~~-ti~eNI~~g~---~~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 750 (1496)
.++|++|++.++.. |++||+.++. ..+. ++..++++.+++. ...++...+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-----------HRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHH
Confidence 26899999988764 9999998742 1222 2233344444332 23356678999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCccccCCEEEEEeCCeEEEecC
Q 039402 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPAADLILVMKDGKITQAGK 824 (1496)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~ 824 (1496)
++||||++.+|+++||||||++||+.+...+.+ ++... . +|+|+|++||+++++..+|++++|++|++++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQ-LLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999888865 44443 3 4899999999999988888999999999998775
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=336.34 Aligned_cols=202 Identities=27% Similarity=0.397 Sum_probs=165.0
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 618 LDIVDGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
++++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 67899999996311 127999999999999999999999999999999999999999999998863
Q ss_pred --eEEEccCCccCC-CcHHHHhccCCC---CCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 683 --KAYVAQSPWIQS-GKIEDNILFGKE---MNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 683 --~~yv~Q~~~i~~-~ti~eNI~~g~~---~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
++|++|++.++. .|++||+.++.. .+.. +..+.++..++. ........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE-----------DKADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-----------hhhhcChhhCCHHHHHHHH
Confidence 589999999886 699999987532 2221 222233333332 2334567899999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
||||++.+|+++||||||++||+.+...+.+.+.....+ ++|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999988886544333333 8999999999999865 99999999999999999887653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=332.78 Aligned_cols=192 Identities=30% Similarity=0.447 Sum_probs=159.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~yv 686 (1496)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 i~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFG---NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEEC---CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 46789999985 357999999999999999999999999999999999999999999999873 6899
Q ss_pred ccCCccCC-CcHHHHhccCCC---CCHHH----HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 039402 687 AQSPWIQS-GKIEDNILFGKE---MNRER----YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 758 (1496)
Q Consensus 687 ~Q~~~i~~-~ti~eNI~~g~~---~~~~~----~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 758 (1496)
+|++.++. .|++||+.++.. .+.+. ..+.++..++. ....+...+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-----------HLLDRKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-----------HHHhCChhhCCHHHHHHHHHHHHHh
Confidence 99999875 699999987532 22222 22333333332 2235667899999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEec
Q 039402 759 QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823 (1496)
Q Consensus 759 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 823 (1496)
.+|+++||||||++||+++.+.+.+.+.+... .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999888764433333 38999999999998765 9999999999998865
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=344.40 Aligned_cols=201 Identities=25% Similarity=0.444 Sum_probs=169.6
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|+++.|+ +++++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYS--DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeC--CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 589999999995 2357999999999999999999999999999999999999999999999873
Q ss_pred -eEEEccCC--ccCCCcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 683 -KAYVAQSP--WIQSGKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 683 -~~yv~Q~~--~i~~~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
++|++|+| .+++.|++||+.++.. +.. ++..++++.+++.. ...+.+.+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhCCcccCCHHHHHHHH
Confidence 58999998 5678899999987532 222 23344455555532 235678899999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hC-CcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHH
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LS-SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLI 829 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~ 829 (1496)
|||||+.+|+++||||||++||+.+...+.+. +..+ .+ |+|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKL-LVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999998888654 4444 33 899999999999987 59999999999999999999886
Q ss_pred hc
Q 039402 830 NS 831 (1496)
Q Consensus 830 ~~ 831 (1496)
..
T Consensus 231 ~~ 232 (283)
T PRK13636 231 AE 232 (283)
T ss_pred cC
Confidence 53
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=347.68 Aligned_cols=202 Identities=25% Similarity=0.415 Sum_probs=166.9
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------e
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------K 683 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------~ 683 (1496)
..++++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|.++|++|+|.++|. +
T Consensus 3 ~~i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeC---CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 3589999999995 357999999999999999999999999999999999999999999999873 6
Q ss_pred EEEccCCccCC-CcHHHHhccC-C--CCCHHH----HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHH
Q 039402 684 AYVAQSPWIQS-GKIEDNILFG-K--EMNRER----YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 755 (1496)
Q Consensus 684 ~yv~Q~~~i~~-~ti~eNI~~g-~--~~~~~~----~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR 755 (1496)
+|++|++.++. .|++||+.+. . ..+.+. ..+.++.+++. .....+..+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-----------SKADVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-----------hHhcCchhhCCHHHHHHHHHHH
Confidence 99999998874 6999999752 1 122221 22233333332 1234566799999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 756 ALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 756 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
|++.+|+++||||||++||+.+...+.+.+.+...+|+|+|++||+++++.. ||+|++|++|+++..|+++++...
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999988876443333458999999999999865 999999999999999999888643
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=350.32 Aligned_cols=203 Identities=25% Similarity=0.423 Sum_probs=168.2
Q ss_pred CccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------
Q 039402 615 ETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1496)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------ 682 (1496)
...++++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 39 ~~~i~i~nl~k~y~---~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 39 TVAIDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred ceeEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 34699999999995 357999999999999999999999999999999999999999999999883
Q ss_pred eEEEccCCccC-CCcHHHHhcc-CC--CCCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHH
Q 039402 683 KAYVAQSPWIQ-SGKIEDNILF-GK--EMNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754 (1496)
Q Consensus 683 ~~yv~Q~~~i~-~~ti~eNI~~-g~--~~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 754 (1496)
++|+||++.++ ..|++||+.+ +. ..+.+ +.+++++.+++.+ ...++..+||||||||++||
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-----------~~~~~~~~LS~G~kqrv~lA 184 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-----------KADARVSDLSGGMKRRLTLA 184 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhCCChhhCCHHHHHHHHHH
Confidence 69999999886 5699999975 22 12222 2222333333321 22456679999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
|||+++|+++||||||++||+.+...+++.+.+...+|+|||++||+++.+.. ||+|++|++|+++..|+.+++.+.
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999998876543333458999999999999875 999999999999999999998653
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=340.53 Aligned_cols=205 Identities=25% Similarity=0.398 Sum_probs=170.7
Q ss_pred CccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC-----CccEEEEcCe-------
Q 039402 615 ETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCGT------- 682 (1496)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~i~~~g~------- 682 (1496)
+..++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.
T Consensus 17 ~~~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEEC---CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 45799999999995 35799999999999999999999999999999999999974 8999998872
Q ss_pred --------eEEEccCCccCCCcHHHHhccCCC---C--C----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCCh
Q 039402 683 --------KAYVAQSPWIQSGKIEDNILFGKE---M--N----RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSG 745 (1496)
Q Consensus 683 --------~~yv~Q~~~i~~~ti~eNI~~g~~---~--~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 745 (1496)
++|++|+|.++..|++||+.++.. . . .++..++++.+++.+++. +..++.+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 589999999988899999987531 1 1 122334455545433221 233567889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecC
Q 039402 746 GQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGK 824 (1496)
Q Consensus 746 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~ 824 (1496)
|||||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEE-LIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999888764 55555557899999999999865 99999999999999999
Q ss_pred hHHHHh
Q 039402 825 YNDLIN 830 (1496)
Q Consensus 825 ~~~l~~ 830 (1496)
.+++..
T Consensus 246 ~~~~~~ 251 (267)
T PRK14235 246 TEKMFT 251 (267)
T ss_pred HHHHHh
Confidence 988764
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=331.34 Aligned_cols=176 Identities=24% Similarity=0.357 Sum_probs=133.1
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccc-cccccchhhccCCCC--
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDP-VMFEGTVRSNLDPLE-- 1345 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~gTIR~NLdp~~-- 1345 (1496)
+|..||.+||+||+|-||||++++|.|.++|++|+ ..+ -+++|=||-- .-|+|||++-|.-..
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCcHHHHHHHhhhh
Confidence 45678999999999999999999999999999998 222 3588999953 348999988774211
Q ss_pred CCcHHHHH-HHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHH
Q 039402 1346 ESTDEQIW-EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424 (1496)
Q Consensus 1346 ~~sd~eI~-~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~ 1424 (1496)
.+.+.-.+ +..+ |-.|+-.+...-.+|||||.||+++|-||.|++++.+||||+|.||.+..-.+-++
T Consensus 429 ~~~~s~~~~ei~~-----------pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv 497 (591)
T COG1245 429 AFGSSYFKTEIVK-----------PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV 497 (591)
T ss_pred hcccchhHHhhcC-----------ccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH
Confidence 12222111 1222 33333334444467999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCcEEEEEccCcchhcc-cCEEEEEeC--CeEeEecChhhHhh
Q 039402 1425 LRQHF--SDCTVLTIAHRITSVID-SDLVLLLNH--GLIEEFDNPANLLE 1469 (1496)
Q Consensus 1425 I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~--G~IvE~g~p~~Ll~ 1469 (1496)
||+.. .++|.++|-|++-.+.. +||++|++. |+=-.-..|..+.+
T Consensus 498 IRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr~ 547 (591)
T COG1245 498 IRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMRE 547 (591)
T ss_pred HHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHHH
Confidence 99854 57899999999998876 999999974 32222345666653
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=338.92 Aligned_cols=205 Identities=29% Similarity=0.426 Sum_probs=170.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC-----CCccEEEEcC---------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG--------- 681 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~i~~~g--------- 681 (1496)
..++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|.++ |++|+|.++|
T Consensus 12 ~~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 12 SKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred ceEEEEEEEEEeC---CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 3589999999995 3479999999999999999999999999999999999986 5899999876
Q ss_pred ------eeEEEccCCccCCCcHHHHhccCCC----CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHH
Q 039402 682 ------TKAYVAQSPWIQSGKIEDNILFGKE----MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQ 747 (1496)
Q Consensus 682 ------~~~yv~Q~~~i~~~ti~eNI~~g~~----~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 747 (1496)
.++|++|++.++..|++||+.++.. .+. ++..++++..++.+++. ...++...+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHHH
Confidence 2689999999888999999987632 222 23334444444432221 23467788999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChH
Q 039402 748 KQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 826 (1496)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 826 (1496)
|||++||||++.+|+++||||||++||+.+...+.+ .+....+++|+|++||+++.+.. ||++++|++|++++.|+.+
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE-LITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999888765 45544567899999999998865 9999999999999999998
Q ss_pred HHHhc
Q 039402 827 DLINS 831 (1496)
Q Consensus 827 ~l~~~ 831 (1496)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 87643
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=343.39 Aligned_cols=197 Identities=32% Similarity=0.450 Sum_probs=162.8
Q ss_pred EEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC-----------------e
Q 039402 620 IVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-----------------T 682 (1496)
Q Consensus 620 ~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g-----------------~ 682 (1496)
++++++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 27 ~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 27 KEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 456666664 35789999999999999999999999999999999999999999999876 2
Q ss_pred eEEEccCCccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHH
Q 039402 683 KAYVAQSPWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754 (1496)
Q Consensus 683 ~~yv~Q~~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 754 (1496)
++|++|++.++. .|++||+.++.. .+. ++..++++.+++.+. ......+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGW-----------EHKYPDELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhCCcccCCHHHHHHHHHH
Confidence 689999999874 699999987531 222 233444555554332 3455678999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
||++.+|+++||||||++||+.+.+.+.+. +..+ . .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDE-LLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999998888754 4443 3 38999999999998765 999999999999999999888654
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=355.22 Aligned_cols=228 Identities=27% Similarity=0.416 Sum_probs=193.2
Q ss_pred eEEEEeEEeEeCCCCC--ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCC----ccEEEECCeeCCCCChHH
Q 039402 1245 KIDLLDLQVRYAPQMP--LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA----AGQILIDGIDISLIGLHD 1318 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~--~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~----~G~I~IDG~dI~~i~l~~ 1318 (1496)
-++++|+++.|..... .+++||||+|.+||.+||||.|||||||++++|.|+.++. +|+|..||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999975432 5999999999999999999999999999999999999987 899999999999998766
Q ss_pred Hh----cccEEEccccc-cccc--chhhccCC----CC----CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCC
Q 039402 1319 LR----SRLSIIPQDPV-MFEG--TVRSNLDP----LE----ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1383 (1496)
Q Consensus 1319 LR----~~i~iIpQdp~-LF~g--TIR~NLdp----~~----~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nL 1383 (1496)
.| ++|++|||||. .++- ||.+-+.- .. +...++..+.|+++++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 53 57999999995 5544 66555531 11 1123567888999998765543 1123578
Q ss_pred CchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeE
Q 039402 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEE 1460 (1496)
Q Consensus 1384 S~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE 1460 (1496)
|||||||+.||+||..+|++||+||||.+||+.|.++|.+.|++.. .+.++|+|||++..+.+ ||||+||.+|++||
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999866 57899999999999988 99999999999999
Q ss_pred ecChhhHhhcCCcHHHHHHHH
Q 039402 1461 FDNPANLLENKSSSFSQLVAE 1481 (1496)
Q Consensus 1461 ~g~p~~Ll~~~~s~F~~l~~~ 1481 (1496)
.|+++++++++...|.+..-+
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~ 256 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLA 256 (539)
T ss_pred ecCHHHHHhccCCcccHHHHh
Confidence 999999999887767655433
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=335.42 Aligned_cols=199 Identities=30% Similarity=0.451 Sum_probs=165.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe---------------
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------------- 682 (1496)
++++|+++.|+ ++++++|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEEC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 67899999995 357999999999999999999999999999999999999999999999872
Q ss_pred eEEEccCCccCC-CcHHHHhccCCC----CCHHH----HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 KAYVAQSPWIQS-GKIEDNILFGKE----MNRER----YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 ~~yv~Q~~~i~~-~ti~eNI~~g~~----~~~~~----~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
++|++|++.++. .|++||+.++.. .+.+. ..++++..++ ......+..+||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGL-----------AERAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hHHHhcChhhcCHHHHHHHHH
Confidence 589999998875 699999987631 22222 2223333222 233456678999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
|||++.+|++++|||||++||+++...+.+ ++..+ .+++|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLK-VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999888875 45444 358999999999999875 999999999999999999887643
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=331.93 Aligned_cols=195 Identities=19% Similarity=0.300 Sum_probs=159.6
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------eE
Q 039402 618 LDIVDGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------KA 684 (1496)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------~~ 684 (1496)
++++|++++|+... ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 67899999996321 127999999999999999999999999999999999999999999999873 68
Q ss_pred EEccCCccCCC-cHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH
Q 039402 685 YVAQSPWIQSG-KIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 756 (1496)
Q Consensus 685 yv~Q~~~i~~~-ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 756 (1496)
|++|++.++.. |++||+.+... .+. ++..+.++..++. ....+.+.+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-----------ELLDRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-----------HHHhhhhhhcCHHHHHHHHHHHH
Confidence 99999988874 99999976421 121 2233344444432 23456778999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEec
Q 039402 757 LYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823 (1496)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 823 (1496)
++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++++.. ||++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999888875443333458999999999998765 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=343.45 Aligned_cols=203 Identities=24% Similarity=0.419 Sum_probs=166.0
Q ss_pred EEEEeeEEEecCCC--CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 618 LDIVDGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
++++|++++|+... .+++|+|+||+|++|++++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78899999996321 146999999999999999999999999999999999999999999999872
Q ss_pred ----eEEEccCC--ccCCCcHHHHhccCCC---CCHHHH----HHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHH
Q 039402 683 ----KAYVAQSP--WIQSGKIEDNILFGKE---MNRERY----NAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 749 (1496)
Q Consensus 683 ----~~yv~Q~~--~i~~~ti~eNI~~g~~---~~~~~~----~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 749 (1496)
++|++|++ .+++.|++|||.++.. .+.+.. +++++..++.+ .....+..+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 58999998 5778899999987532 222222 22233333321 1235667899999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHH
Q 039402 750 RIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 828 (1496)
|++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|||++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999888875443333358999999999998865 999999999999999999887
Q ss_pred Hh
Q 039402 829 IN 830 (1496)
Q Consensus 829 ~~ 830 (1496)
..
T Consensus 233 ~~ 234 (280)
T PRK13649 233 FQ 234 (280)
T ss_pred hc
Confidence 54
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=337.13 Aligned_cols=202 Identities=28% Similarity=0.423 Sum_probs=164.7
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~ 684 (1496)
++++|++++|+.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 3678999999621 57999999999999999999999999999999999999999999999873 58
Q ss_pred EEccCCccCC-CcHHHHhccCCC---CCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH
Q 039402 685 YVAQSPWIQS-GKIEDNILFGKE---MNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 756 (1496)
Q Consensus 685 yv~Q~~~i~~-~ti~eNI~~g~~---~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 756 (1496)
|++|+|.++. .|++||+.++.. .+.+ +..++++..++.. .....+.+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999998885 699999987532 2211 2223333333321 013456778999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 757 LYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
++.+|+++||||||++||+.+...+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999998887654433333 38999999999998765 99999999999999999888754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=339.56 Aligned_cols=211 Identities=20% Similarity=0.259 Sum_probs=169.0
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc--CCCccEEEECCeeCCCCChHHHh-cc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV--EPAAGQILIDGIDISLIGLHDLR-SR 1322 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~LR-~~ 1322 (1496)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.+||.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999964 35999999999999999999999999999999999995 69999999999999888776654 57
Q ss_pred cEEEccccccccc-chhhcc-------CCCCC---Cc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1323 LSIIPQDPVMFEG-TVRSNL-------DPLEE---ST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1323 i~iIpQdp~LF~g-TIR~NL-------dp~~~---~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
++++||+|.++.. |..+++ ..... .. ++.+.+.++..++ |+++.+... ..+||+||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~--~~~LS~G~ 150 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM-------PEDLLTRSV--NVGFSGGE 150 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCC-------ChhhcccCC--CCCCCHHH
Confidence 9999999987754 433332 21110 01 1122333444333 222211110 13699999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEccCcchhcc--cCEEEEEeCCeEeEecCh
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS-DCTVLTIAHRITSVID--SDLVLLLNHGLIEEFDNP 1464 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~-~~TVI~IAHRl~ti~~--~DrIlVL~~G~IvE~g~p 1464 (1496)
|||++||||++++|+||+|||||++||.++.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|++
T Consensus 151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~ 230 (248)
T PRK09580 151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999987643 6899999999999987 899999999999999998
Q ss_pred hhH
Q 039402 1465 ANL 1467 (1496)
Q Consensus 1465 ~~L 1467 (1496)
+..
T Consensus 231 ~~~ 233 (248)
T PRK09580 231 TLV 233 (248)
T ss_pred HHH
Confidence 854
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=338.42 Aligned_cols=205 Identities=26% Similarity=0.415 Sum_probs=169.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC--C---CccEEEEcCe--------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP--K---ISGTLKLCGT-------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~--~---~~G~i~~~g~-------- 682 (1496)
..++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|.++ | ++|+|.++|.
T Consensus 11 ~~l~i~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 11 EVYQINGMNLWYG---QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred ceEEEeeEEEEEC---CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 3589999999995 3579999999999999999999999999999999999987 3 6999998763
Q ss_pred -------eEEEccCCccCCCcHHHHhccCCCC----CHHH----HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHH
Q 039402 683 -------KAYVAQSPWIQSGKIEDNILFGKEM----NRER----YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQ 747 (1496)
Q Consensus 683 -------~~yv~Q~~~i~~~ti~eNI~~g~~~----~~~~----~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 747 (1496)
++|++|++.+++.|++||+.++... +++. ..++++..++.+.+ .+..+..+.+|||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq 160 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQ 160 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHH
Confidence 5899999999888999999876321 2221 22233333333221 123467788999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChH
Q 039402 748 KQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 826 (1496)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 826 (1496)
|||++||||++.+|+++||||||++||+++...+. +++....+++|+|+|||+++.+.. ||++++|++|++++.|+++
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIE-ELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999988775 456555568999999999999865 9999999999999999999
Q ss_pred HHHhc
Q 039402 827 DLINS 831 (1496)
Q Consensus 827 ~l~~~ 831 (1496)
++.+.
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 88653
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=344.31 Aligned_cols=204 Identities=24% Similarity=0.371 Sum_probs=165.0
Q ss_pred ccEEEEeeEEEecCCC--CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC------------
Q 039402 616 TALDIVDGNFSWDISS--HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------ 681 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g------------ 681 (1496)
..++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 3589999999996321 13699999999999999999999999999999999999999999999876
Q ss_pred ------eeEEEccCCc--cCCCcHHHHhccCCC---CCHHH----HHHHHHHhchhhHHHhccCCCcccccCCCCCCChH
Q 039402 682 ------TKAYVAQSPW--IQSGKIEDNILFGKE---MNRER----YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGG 746 (1496)
Q Consensus 682 ------~~~yv~Q~~~--i~~~ti~eNI~~g~~---~~~~~----~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 746 (1496)
.++|++|+|. ++..|++||+.|+.. ...+. ..+.++..++ +. ...++...+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~---~~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PE---DYVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------Ch---hHhcCChhhCCHH
Confidence 2589999984 567799999988632 22221 1122222222 11 1235677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEec
Q 039402 747 QKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823 (1496)
Q Consensus 747 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 823 (1496)
||||++||||++.+|+++||||||++||+.+...+.+ ++..+ . .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFIN-LFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999888865 44443 3 38999999999998765 9999999999999999
Q ss_pred ChHHHHh
Q 039402 824 KYNDLIN 830 (1496)
Q Consensus 824 ~~~~l~~ 830 (1496)
+++++..
T Consensus 234 ~~~~~~~ 240 (289)
T PRK13645 234 SPFEIFS 240 (289)
T ss_pred CHHHHhc
Confidence 9888754
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=329.57 Aligned_cols=192 Identities=26% Similarity=0.406 Sum_probs=158.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC---------eeEEEcc
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------TKAYVAQ 688 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g---------~~~yv~Q 688 (1496)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~---~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 46789999985 35799999999999999999999999999999999999999999999987 3799999
Q ss_pred CCccCC-CcHHHHhccCCC---CC----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 689 SPWIQS-GKIEDNILFGKE---MN----RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 689 ~~~i~~-~ti~eNI~~g~~---~~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
++.++. .|++||+.++.. .. +++..+.++..++. ....+...+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-----------EYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-----------HHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 998876 499999987431 11 12223333333332 233466789999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEec
Q 039402 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823 (1496)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 823 (1496)
|+++||||||++||+.+...+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999988876543333458999999999998865 9999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=338.43 Aligned_cols=201 Identities=28% Similarity=0.456 Sum_probs=167.1
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 4689999999995 357999999999999999999999999999999999999999999998872
Q ss_pred -------------eEEEccCCccCC-CcHHHHhccCC----CCCH----HHHHHHHHHhchhhHHHhccCCCcccccCCC
Q 039402 683 -------------KAYVAQSPWIQS-GKIEDNILFGK----EMNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERG 740 (1496)
Q Consensus 683 -------------~~yv~Q~~~i~~-~ti~eNI~~g~----~~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g 740 (1496)
++|++|++.++. .|++||+.++. ..+. ++..+.++..++.+.+ .++..
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 699999999886 59999998642 1222 1222233333332111 14667
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCe
Q 039402 741 INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGK 818 (1496)
Q Consensus 741 ~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 818 (1496)
.+||||||||++|||||+++|+++||||||++||+.+.+.+.+ ++..+ .+|+|+|+|||+++++.. ||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 8999999999999999999999999999999999999998875 44444 358999999999999886 99999999999
Q ss_pred EEEecChHHHHh
Q 039402 819 ITQAGKYNDLIN 830 (1496)
Q Consensus 819 i~~~G~~~~l~~ 830 (1496)
+++.|+++++..
T Consensus 230 i~~~~~~~~~~~ 241 (257)
T PRK10619 230 IEEEGAPEQLFG 241 (257)
T ss_pred EEEeCCHHHhhh
Confidence 999999988764
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=330.11 Aligned_cols=190 Identities=24% Similarity=0.384 Sum_probs=158.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------eEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------KAY 685 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------~~y 685 (1496)
++++|+++.|+ ++++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~---~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYG---KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEEC---CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 46889999995 347999999999999 99999999999999999999999999999999872 689
Q ss_pred EccCCccCCC-cHHHHhccCCC---CC----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 686 VAQSPWIQSG-KIEDNILFGKE---MN----RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 686 v~Q~~~i~~~-ti~eNI~~g~~---~~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
++|++.++.. |++||+.+... .+ +++.+++++.+++.+.. .....+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-----------KKKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-----------hCchhhCCHHHHHHHHHHHHH
Confidence 9999998875 99999986421 12 12334445555553322 345678999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEec
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 823 (1496)
+++|+++||||||++||+.+.+.+.+ .++...+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRN-LLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999988865 45555557999999999999865 9999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=340.44 Aligned_cols=201 Identities=26% Similarity=0.358 Sum_probs=166.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 3589999999995 357999999999999999999999999999999999999999999999872
Q ss_pred ---eEEEccCCccCCC-cHHHHhccCC----CCCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHH
Q 039402 683 ---KAYVAQSPWIQSG-KIEDNILFGK----EMNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750 (1496)
Q Consensus 683 ---~~yv~Q~~~i~~~-ti~eNI~~g~----~~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 750 (1496)
++|++|++.++.. |++||+.++. ..+.+ +..+.++..++. ........+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-----------GAAKLMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHH
Confidence 6899999998875 9999998742 12222 122233333332 12345678999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHH
Q 039402 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 827 (1496)
++||||++.+|+++||||||++||+.+.+.+.+. +..+ .+ |+|+|++||+++++.. ||++++|++|++++.|++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKL-ISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQA 230 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999998888654 4443 33 7999999999998876 99999999999999999999
Q ss_pred HHhc
Q 039402 828 LINS 831 (1496)
Q Consensus 828 l~~~ 831 (1496)
+.+.
T Consensus 231 ~~~~ 234 (269)
T PRK11831 231 LQAN 234 (269)
T ss_pred HhcC
Confidence 8754
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=351.46 Aligned_cols=189 Identities=31% Similarity=0.439 Sum_probs=159.9
Q ss_pred CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC---------------------eeEEEccCC
Q 039402 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------------------TKAYVAQSP 690 (1496)
Q Consensus 632 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g---------------------~~~yv~Q~~ 690 (1496)
...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++||+|++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 35689999999999999999999999999999999999999999999987 269999999
Q ss_pred ccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 039402 691 WIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762 (1496)
Q Consensus 691 ~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1496)
.+++ .|++||+.++.. .++ ++..++++..+|.+. ......+|||||||||+|||||+.+|+
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~-----------~~~~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW-----------ADKKPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9987 699999998742 222 223344444444322 345667899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHhc
Q 039402 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
|+|||||||+||+.+...+++.+.....+ ++|+|+|||+++++. .||+|++|++|++++.|+++++..+
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 99999999999999999987665544333 899999999999875 5999999999999999999998754
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=334.69 Aligned_cols=190 Identities=27% Similarity=0.416 Sum_probs=163.8
Q ss_pred ceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccc-cchhhcc
Q 039402 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFE-GTVRSNL 1341 (1496)
Q Consensus 1263 Lk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~-gTIR~NL 1341 (1496)
|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+++||+|.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 589999999999999999999999999999999999999999999999876543 2489999999987 5999998
Q ss_pred CCC-----CCCcH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCC
Q 039402 1342 DPL-----EESTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATAS 1412 (1496)
Q Consensus 1342 dp~-----~~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTss 1412 (1496)
... ...++ +++.++++++++.+...+ ....||||||||++|||||+++|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-----------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-----------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 531 22332 246677888877654332 2357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1413 VDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1413 lD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
||+.+.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|++.+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 999999999999988643 7899999999999876 9999999999999999887763
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=373.64 Aligned_cols=216 Identities=25% Similarity=0.364 Sum_probs=148.7
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHh------cccC----C-----------CccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLF------RIVE----P-----------AAGQ 1303 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~------rl~e----p-----------~~G~ 1303 (1496)
.++++|++. ..|+|+|++|++||.+||+|++|||||||++-.+ ++.+ | -.--
T Consensus 612 ~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (924)
T TIGR00630 612 FLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKV 684 (924)
T ss_pred eEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCce
Confidence 588999863 2599999999999999999999999999998333 1111 1 1123
Q ss_pred EEECCeeCCC---------CC-hHHHhcccEEEcc------cccccc--------------cchhhccCCC---------
Q 039402 1304 ILIDGIDISL---------IG-LHDLRSRLSIIPQ------DPVMFE--------------GTVRSNLDPL--------- 1344 (1496)
Q Consensus 1304 I~IDG~dI~~---------i~-l~~LR~~i~iIpQ------dp~LF~--------------gTIR~NLdp~--------- 1344 (1496)
|.||-.+|.. .+ .+.+|.-++=.|+ .+-.|+ |.+.-++...
T Consensus 685 v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 764 (924)
T TIGR00630 685 IHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEV 764 (924)
T ss_pred EEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCC
Confidence 5666655542 12 2446777766554 234443 1222111100
Q ss_pred ---CCCcHH--------------------HHHHHHHHc-CCcHHHHhc-cCCccc-ccccCCCCCCchHHHHHHHHHHHc
Q 039402 1345 ---EESTDE--------------------QIWEALDKC-QLGDEVRKK-EGKLDS-KVTENGENWSMGQRQLVCLGRVLL 1398 (1496)
Q Consensus 1345 ---~~~sd~--------------------eI~~aL~~~-~L~~~i~~l-p~gLdt-~v~e~G~nLS~GQrQll~LARALL 1398 (1496)
..|.++ |..+..+.. .+.+..+-+ .-||+. .++.....||||||||++|||+|+
T Consensus 765 C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~ 844 (924)
T TIGR00630 765 CKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELS 844 (924)
T ss_pred cCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHh
Confidence 011111 111111110 011111100 125554 367778899999999999999999
Q ss_pred c---CCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEE------eCCeEeEecChhhH
Q 039402 1399 K---RSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLL------NHGLIEEFDNPANL 1467 (1496)
Q Consensus 1399 r---~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL------~~G~IvE~g~p~~L 1467 (1496)
+ +|+++||||||++||+.+...+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|+++
T Consensus 845 ~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 845 KRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 7 589999999999999999999999998875 478999999999999999999999 79999999999886
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=335.23 Aligned_cols=191 Identities=24% Similarity=0.354 Sum_probs=160.3
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEc-cccccc-ccch
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIP-QDPVMF-EGTV 1337 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIp-Qdp~LF-~gTI 1337 (1496)
.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++++| |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4599999999999999999999999999999999999999999999999987653 346788999997 667776 4699
Q ss_pred hhccCCC---CCCcH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCC
Q 039402 1338 RSNLDPL---EESTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEAT 1410 (1496)
Q Consensus 1338 R~NLdp~---~~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaT 1410 (1496)
++|+... ...+. +++.++++..++.+.. |+. ...||+|||||++||||++++|++|||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~----~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-------DTP----VRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------cCC----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 9998531 12222 2345566666664332 332 3569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEec
Q 039402 1411 ASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1411 sslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g 1462 (1496)
++||+++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999998643 6899999999998866 9999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=341.21 Aligned_cols=201 Identities=25% Similarity=0.410 Sum_probs=171.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC------------eeE
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG------------TKA 684 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g------------~~~ 684 (1496)
.++++|++..|.. ++.+|+||||+|++|++++++||||||||||+++|+|.+.|++|+|.++| ++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 4678899999952 36899999999999999999999999999999999999999999999998 369
Q ss_pred EEccCCccCC-CcHHHHhccCC-----C--CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH
Q 039402 685 YVAQSPWIQS-GKIEDNILFGK-----E--MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 756 (1496)
Q Consensus 685 yv~Q~~~i~~-~ti~eNI~~g~-----~--~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 756 (1496)
|+||+|.++. .|++||+.|-. + .++++.+++++..+|.++. +.+..+||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 9999998764 59999998732 1 2345666677766664311 45678999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 757 LYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS-KTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~-~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
|.++|++|||||||+||||..+..+.+.+.....++ +||+++||.++.+.. ||+|++|++|++++.|+.+++..
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999888875444444456 799999999999876 99999999999999999888654
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=330.26 Aligned_cols=191 Identities=28% Similarity=0.414 Sum_probs=157.0
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC---------------
Q 039402 618 LDIVDGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 681 (1496)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g--------------- 681 (1496)
++++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 67899999996321 24699999999999999999999999999999999999999999999876
Q ss_pred --eeEEEccCCccCC-CcHHHHhccCC---CCCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 682 --TKAYVAQSPWIQS-GKIEDNILFGK---EMNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 682 --~~~yv~Q~~~i~~-~ti~eNI~~g~---~~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
.++|++|++.++. .|++||+.++. ..+.. +..+.++.+++. ........+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-----------HRINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHH
Confidence 2699999998875 59999998742 12222 222333333332 233566789999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCccccCCEEEEEeCCeEE
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPAADLILVMKDGKIT 820 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 820 (1496)
+||||++.+|+++||||||++||+++...+.+ ++..+ . .++|+|++||+++++..+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFD-LMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999888875 44444 3 379999999999998779999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=336.58 Aligned_cols=204 Identities=25% Similarity=0.405 Sum_probs=168.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcC---CCC--CccEEEEcCe---------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE---VPK--ISGTLKLCGT--------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~---~~~--~~G~i~~~g~--------- 682 (1496)
.++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|. ++| ++|+|.++|.
T Consensus 3 ~l~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEEC---CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 588999999995 35799999999999999999999999999999999996 454 5899998762
Q ss_pred ------eEEEccCCccCCCcHHHHhccCCCC----CH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 ------KAYVAQSPWIQSGKIEDNILFGKEM----NR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 ------~~yv~Q~~~i~~~ti~eNI~~g~~~----~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++|++|++.++..|++||+.++... +. ++..++++.+++.++++ +..++.+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 6999999999888999999875321 11 22334444444433221 234577889999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 827 (1496)
||++||||++.+|+++||||||++||+.+...+.+ .++.+.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE-LIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999888865 45555568999999999999865 99999999999999999998
Q ss_pred HHhc
Q 039402 828 LINS 831 (1496)
Q Consensus 828 l~~~ 831 (1496)
+.++
T Consensus 232 ~~~~ 235 (250)
T PRK14245 232 IFTN 235 (250)
T ss_pred HhcC
Confidence 8654
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=336.30 Aligned_cols=199 Identities=25% Similarity=0.403 Sum_probs=166.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~ 684 (1496)
++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++
T Consensus 3 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYG---TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEEC---CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 78899999995 357999999999999999999999999999999999999999999999873 69
Q ss_pred EEccCCccCCC-cHHHHhccCCC-----C---C---HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 685 YVAQSPWIQSG-KIEDNILFGKE-----M---N---RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 685 yv~Q~~~i~~~-ti~eNI~~g~~-----~---~---~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
|++|++.++.. |+.||+.++.. + . .++..++++.+++.+ .....+..||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH-----------LADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH-----------HHcCCcccCCHHHHHHHH
Confidence 99999988765 99999988631 1 1 122333344444432 234567899999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|+++..|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999888875443323358999999999999865 99999999999999999888753
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=324.51 Aligned_cols=194 Identities=26% Similarity=0.353 Sum_probs=168.6
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ..+|+++++
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 478999999964 35899999999999999999999999999999999999999999999999987643 567899999
Q ss_pred Eccccccc-ccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCE
Q 039402 1326 IPQDPVMF-EGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKI 1403 (1496)
Q Consensus 1326 IpQdp~LF-~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~I 1403 (1496)
+||++.++ ..|+++|+... ....++++.++++..++.+.... ...+||+|||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR-----------PVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcC-----------chhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999876 57999999643 23467788899999998654322 2357999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchh-cccCEEEEE
Q 039402 1404 LMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSV-IDSDLVLLL 1453 (1496)
Q Consensus 1404 LiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti-~~~DrIlVL 1453 (1496)
|||||||++||+.+.+.+.+.|++.. +++|+|+|+|+...+ ..||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998754 478999999987665 459999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=338.51 Aligned_cols=203 Identities=29% Similarity=0.455 Sum_probs=168.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++|+++.|+. +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 35899999999952 2457999999999999999999999999999999999999999999999873
Q ss_pred eEEEccCCc--cCCCcHHHHhccCCC---CCHHH----HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 KAYVAQSPW--IQSGKIEDNILFGKE---MNRER----YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 ~~yv~Q~~~--i~~~ti~eNI~~g~~---~~~~~----~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
++|++|+|. +++.|++|||.++.. ++.++ ..++++..++.+. ..+...+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDY-----------LDKEPQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCCcccCCHHHHHHHHH
Confidence 589999984 557799999988532 23332 2334444444322 345678999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHh
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
|||++.+|+++||||||++||+.+.+.+++.+.+...+ ++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999988887544333334 589999999999887899999999999999999888754
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=337.56 Aligned_cols=205 Identities=27% Similarity=0.377 Sum_probs=172.1
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC-----CCccEEEEcCe--------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCGT-------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~i~~~g~-------- 682 (1496)
..++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 19 ~~l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 4689999999995 3679999999999999999999999999999999999996 58999998872
Q ss_pred -------eEEEccCCccCCCcHHHHhccCCC----CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHH
Q 039402 683 -------KAYVAQSPWIQSGKIEDNILFGKE----MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQ 747 (1496)
Q Consensus 683 -------~~yv~Q~~~i~~~ti~eNI~~g~~----~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 747 (1496)
++|++|++.++..|++|||.++.. .++ ++..++++.+++.+++. +..++.+.+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHH
Confidence 599999999998999999988532 122 22334455555543331 23467788999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChH
Q 039402 748 KQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 826 (1496)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 826 (1496)
|||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||++++|++|++++.|+.+
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEE-TMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999888865 45555568999999999998865 9999999999999999998
Q ss_pred HHHhc
Q 039402 827 DLINS 831 (1496)
Q Consensus 827 ~l~~~ 831 (1496)
++...
T Consensus 248 ~~~~~ 252 (267)
T PRK14237 248 NIFTN 252 (267)
T ss_pred HHhcC
Confidence 88653
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=312.98 Aligned_cols=159 Identities=30% Similarity=0.545 Sum_probs=148.2
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH-HHhcccE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH-DLRSRLS 1324 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~-~LR~~i~ 1324 (1496)
|+++|++++|+.. ++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+.. ..|++++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 5789999999643 599999999999999999999999999999999999999999999999999888764 4678899
Q ss_pred EEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEE
Q 039402 1325 IIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKIL 1404 (1496)
Q Consensus 1325 iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~IL 1404 (1496)
++|| ||+|||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 8999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeE
Q 039402 1405 MLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEE 1460 (1496)
Q Consensus 1405 iLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE 1460 (1496)
+|||||++||.++.+.+.+.|++.. ++.|+|+++|+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998864 47899999999998866 99999999999976
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=334.35 Aligned_cols=208 Identities=23% Similarity=0.348 Sum_probs=167.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFD---GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 378999999995 357999999999999999999999999999999999999999999999872
Q ss_pred eEEEccCCccCCC-cHHHHhccCCCCCHHHH------HHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHH
Q 039402 683 KAYVAQSPWIQSG-KIEDNILFGKEMNRERY------NAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 755 (1496)
Q Consensus 683 ~~yv~Q~~~i~~~-ti~eNI~~g~~~~~~~~------~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR 755 (1496)
++|++|++.++.+ |++||+.++...+...+ ..........+.++.+ |......+...+||||||||++|||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHH
Confidence 6899999998875 99999988532110000 0000000112223322 2223346778899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 756 ALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 756 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
|++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++++.. ||+|++|++|++++.|+++++..
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAE-LLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 9999999999999999999999888865 55555557999999999999875 99999999999999999988753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=346.30 Aligned_cols=206 Identities=26% Similarity=0.436 Sum_probs=169.4
Q ss_pred ccEEEEeeEEEecCCC----------CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe---
Q 039402 616 TALDIVDGNFSWDISS----------HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~----------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--- 682 (1496)
..++++|++++|+... ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 4689999999996321 246899999999999999999999999999999999999999999999873
Q ss_pred -------------eEEEccCCc--cC-CCcHHHHhccCC-----CCCHHH----HHHHHHHhchhhHHHhccCCCccccc
Q 039402 683 -------------KAYVAQSPW--IQ-SGKIEDNILFGK-----EMNRER----YNAVLDACSLKKDLEILSFGDQTVIG 737 (1496)
Q Consensus 683 -------------~~yv~Q~~~--i~-~~ti~eNI~~g~-----~~~~~~----~~~v~~~~~l~~d~~~l~~g~~t~ig 737 (1496)
++||+|+|. ++ ..||.|||.++. ..+++. ..+.++..++.+ ...+
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLIN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhc
Confidence 699999983 54 579999997532 233322 223344444421 1235
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCcccc-CCEEEEE
Q 039402 738 ERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPA-ADLILVM 814 (1496)
Q Consensus 738 ~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~d~i~~l 814 (1496)
..+.+|||||||||+|||||+.+|+++|+||||++||+.+...+.+. +..+ . .+.|+|+||||++.+.. ||+|++|
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~l-L~~l~~~~~~til~iTHdl~~~~~~~dri~vl 235 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNL-LQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 67789999999999999999999999999999999999999988764 4443 3 38999999999999876 9999999
Q ss_pred eCCeEEEecChHHHHhcC
Q 039402 815 KDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 815 ~~G~i~~~G~~~~l~~~~ 832 (1496)
++|+|++.|+.+++.++.
T Consensus 236 ~~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 236 YLGHAVELGTYDEVYHNP 253 (331)
T ss_pred ECCEEEEEcCHHHHHcCC
Confidence 999999999999987653
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=317.83 Aligned_cols=166 Identities=33% Similarity=0.593 Sum_probs=150.3
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------eEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------KAY 685 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------~~y 685 (1496)
++++|++++|+.. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4688999999632 247999999999999999999999999999999999999999999999884 689
Q ss_pred EccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 039402 686 VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYL 765 (1496)
Q Consensus 686 v~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ill 765 (1496)
++|++++++.|++||+ +.+||||||||++||||++.+|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 46899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEec
Q 039402 766 FDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAG 823 (1496)
Q Consensus 766 LDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G 823 (1496)
|||||++||+.+.+.+++. +....+++|+|++||++++++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~-l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSL-IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999998888754 44445689999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=340.38 Aligned_cols=202 Identities=29% Similarity=0.425 Sum_probs=169.5
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCc---cEEEEcCe----------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS---GTLKLCGT---------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~---G~i~~~g~---------- 682 (1496)
..++++|+++.|+.. .+++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 468999999999532 3469999999999999999999999999999999999999988 89999873
Q ss_pred ---eEEEccCCc--cCCCcHHHHhccCCC---CCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHH
Q 039402 683 ---KAYVAQSPW--IQSGKIEDNILFGKE---MNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750 (1496)
Q Consensus 683 ---~~yv~Q~~~--i~~~ti~eNI~~g~~---~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 750 (1496)
++|++|+|+ +++.|++|||.|+.. .+.+ +..++++.+++.+ ..+....+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLD-----------YIDSEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChh-----------HhcCCcccCCHHHHHH
Confidence 599999984 567899999988632 2232 2344455555533 2345668999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hC-CcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHH
Q 039402 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LS-SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l 828 (1496)
++||||++.+|+++||||||++||+.+...+.+. +..+ .+ |+|||++||+++.+..||++++|++|++++.|+++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKL-IRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999988764 4443 33 8999999999999877999999999999999999887
Q ss_pred Hh
Q 039402 829 IN 830 (1496)
Q Consensus 829 ~~ 830 (1496)
..
T Consensus 231 ~~ 232 (282)
T PRK13640 231 FS 232 (282)
T ss_pred hc
Confidence 64
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=338.48 Aligned_cols=205 Identities=23% Similarity=0.350 Sum_probs=168.3
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC-----CCccEEEEcC---------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCG--------- 681 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~i~~~g--------- 681 (1496)
..++++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 20 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeC---CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 4689999999995 3579999999999999999999999999999999999864 6899998876
Q ss_pred ------eeEEEccCCccCCCcHHHHhccCCCC----CH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHH
Q 039402 682 ------TKAYVAQSPWIQSGKIEDNILFGKEM----NR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQ 747 (1496)
Q Consensus 682 ------~~~yv~Q~~~i~~~ti~eNI~~g~~~----~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 747 (1496)
.++|++|++.+++.|++||+.++... .. ++..+.++.+++..++ ....+..+.+|||||
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq 169 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQ 169 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHH
Confidence 26899999999989999999876321 11 1122333333332111 123467788999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChH
Q 039402 748 KQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 826 (1496)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 826 (1496)
|||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||++++|++|++++.|+.+
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEE-LITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHH-HHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999888864 55555557899999999998765 9999999999999999998
Q ss_pred HHHhc
Q 039402 827 DLINS 831 (1496)
Q Consensus 827 ~l~~~ 831 (1496)
++..+
T Consensus 249 ~~~~~ 253 (268)
T PRK14248 249 QIFTS 253 (268)
T ss_pred HHHhC
Confidence 87653
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=337.70 Aligned_cols=205 Identities=24% Similarity=0.374 Sum_probs=169.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC-----CCccEEEEcCe--------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCGT-------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~i~~~g~-------- 682 (1496)
..++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|.++ |++|+|.++|.
T Consensus 12 ~~l~i~nl~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYG---TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEEC---CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 4699999999995 3579999999999999999999999999999999999987 68999998762
Q ss_pred -------eEEEccCCccCCCcHHHHhccCCCC---C---HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHH
Q 039402 683 -------KAYVAQSPWIQSGKIEDNILFGKEM---N---RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 749 (1496)
Q Consensus 683 -------~~yv~Q~~~i~~~ti~eNI~~g~~~---~---~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 749 (1496)
++|++|++.++..|++||+.++... + +++..++++.+++...+ .+...+...+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 6899999998888999999986432 1 12233344444332211 22346677899999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeC-----------C
Q 039402 750 RIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKD-----------G 817 (1496)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~-----------G 817 (1496)
|++||||++.+|+++||||||++||+.+...+.+ +++...+++|+|++||+++.+.. ||++++|++ |
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g 240 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEE-TMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence 9999999999999999999999999999888865 55555567999999999998865 999999996 6
Q ss_pred eEEEecChHHHHhc
Q 039402 818 KITQAGKYNDLINS 831 (1496)
Q Consensus 818 ~i~~~G~~~~l~~~ 831 (1496)
++++.|+.+++.+.
T Consensus 241 ~~~~~~~~~~~~~~ 254 (269)
T PRK14259 241 YLVEFNETKKIFNS 254 (269)
T ss_pred eEEEeCCHHHHHhC
Confidence 78999999888653
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=336.35 Aligned_cols=204 Identities=26% Similarity=0.410 Sum_probs=167.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCC--CC---CccEEEEcCe---------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV--PK---ISGTLKLCGT--------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~--~~---~~G~i~~~g~--------- 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|.. +| ++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYN---KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 588999999995 357999999999999999999999999999999999985 36 5999998762
Q ss_pred ------eEEEccCCccCCCcHHHHhccCCC---C-CHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 ------KAYVAQSPWIQSGKIEDNILFGKE---M-NRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 ------~~yv~Q~~~i~~~ti~eNI~~g~~---~-~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++|++|++.+++.|++||+.++.. . +++ +..++++.+++.+.+. +..++.+.+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 689999999999999999987521 1 111 2223344444322221 234677889999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 827 (1496)
||++||||++.+|+++||||||++||+.+...+++ ++....+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEE-TLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH-HHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999988875 55555557999999999998765 99999999999999999988
Q ss_pred HHhc
Q 039402 828 LINS 831 (1496)
Q Consensus 828 l~~~ 831 (1496)
+.+.
T Consensus 234 ~~~~ 237 (252)
T PRK14239 234 MFMN 237 (252)
T ss_pred HHhC
Confidence 8654
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=335.85 Aligned_cols=206 Identities=22% Similarity=0.334 Sum_probs=166.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 589999999995 357999999999999999999999999999999999999999999999873
Q ss_pred eEEEccCCccCCC-cHHHHhccCCCC----------------CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCCh
Q 039402 683 KAYVAQSPWIQSG-KIEDNILFGKEM----------------NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSG 745 (1496)
Q Consensus 683 ~~yv~Q~~~i~~~-ti~eNI~~g~~~----------------~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 745 (1496)
++|++|++.++.. |++||+.++... .+.. .+..+ ...+.++.+ |.....++++.+|||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~l~~~--gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SEALD--RAATWLERV--GLLEHANRQAGNLAY 156 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hHHHH--HHHHHHHhC--ChhhhhhCChhhCCH
Confidence 4789999998875 999999976310 0000 00000 011122222 223345678889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEec
Q 039402 746 GQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823 (1496)
Q Consensus 746 GQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 823 (1496)
|||||++||||++.+|+++||||||++||+.+...+.+.+.....+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 236 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecC
Confidence 9999999999999999999999999999999988886544333333 7999999999999865 9999999999999999
Q ss_pred ChHHHHh
Q 039402 824 KYNDLIN 830 (1496)
Q Consensus 824 ~~~~l~~ 830 (1496)
+.+++..
T Consensus 237 ~~~~~~~ 243 (255)
T PRK11300 237 TPEEIRN 243 (255)
T ss_pred CHHHHhh
Confidence 9888753
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=336.66 Aligned_cols=205 Identities=24% Similarity=0.411 Sum_probs=169.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC-----CccEEEEcCe--------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCGT-------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~i~~~g~-------- 682 (1496)
..++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|.++| ++|+|.++|.
T Consensus 11 ~~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 3689999999985 35799999999999999999999999999999999999975 7999998762
Q ss_pred -------eEEEccCCccCCCcHHHHhccCCC---CCHHH----HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 -------KAYVAQSPWIQSGKIEDNILFGKE---MNRER----YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 -------~~yv~Q~~~i~~~ti~eNI~~g~~---~~~~~----~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++|++|++.++..|++||+.++.. .+.+. ..++++.+++..++ ....++...+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHH
Confidence 589999999988999999987531 22222 23334444332211 1234567789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 827 (1496)
||++||||++.+|+++||||||++||+.+...+.+ +++.+.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIED-LIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999888864 55555568999999999999865 99999999999999999988
Q ss_pred HHhc
Q 039402 828 LINS 831 (1496)
Q Consensus 828 l~~~ 831 (1496)
+...
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 8643
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=331.56 Aligned_cols=198 Identities=28% Similarity=0.461 Sum_probs=163.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC--------------ee
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------TK 683 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g--------------~~ 683 (1496)
++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYG---QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeC---CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 46889999995 35799999999999999999999999999999999999999999999986 26
Q ss_pred EEEccCCccCCC-cHHHHhccCCCC---C-HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 039402 684 AYVAQSPWIQSG-KIEDNILFGKEM---N-RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 758 (1496)
Q Consensus 684 ~yv~Q~~~i~~~-ti~eNI~~g~~~---~-~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 758 (1496)
+|++|++.++.. |++||+.++... . .+.+.++++..+. ......+...+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 899999988875 999999876321 1 1222333333221 112235677899999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHH
Q 039402 759 QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 759 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 828 (1496)
++|+++||||||++||+.+...+.+.+.+... .++|+|++||+++++.. ||++++|++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999998888754433333 37999999999999875 999999999999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=321.69 Aligned_cols=213 Identities=25% Similarity=0.418 Sum_probs=186.0
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHH-hcccE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-RSRLS 1324 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i~ 1324 (1496)
.+.+|++.+|..- .+++|+||++++||.+|++|||||||||+++++.|+|+|++|+|.++|.||..++.+.. |..|+
T Consensus 5 L~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 6789999999643 49999999999999999999999999999999999999999999999999999998884 66688
Q ss_pred EEccccccccc-chhhccCCCCC-------------C--cH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCC
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPLEE-------------S--TD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWS 1384 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~~~-------------~--sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1384 (1496)
--.|.+-+|++ |+-||+.-... + .+ ++-.+.|+.++|.+.. .+...+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a-----------~~~A~~Ls 151 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA-----------DRPAGNLS 151 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhh-----------cchhhcCC
Confidence 88999999988 99999853210 1 12 3345566777665543 34456899
Q ss_pred chHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEe
Q 039402 1385 MGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEF 1461 (1496)
Q Consensus 1385 ~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~ 1461 (1496)
.||+.||-|||||..+|++|+||||.|++.+.-...+.+.|++.-+ +.||++|-||++.|++ ||||+||+.|+++..
T Consensus 152 yG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAe 231 (250)
T COG0411 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231 (250)
T ss_pred hhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCccc
Confidence 9999999999999999999999999999999999999999998774 4899999999999998 999999999999999
Q ss_pred cChhhHhhcC
Q 039402 1462 DNPANLLENK 1471 (1496)
Q Consensus 1462 g~p~~Ll~~~ 1471 (1496)
|+|++..+++
T Consensus 232 G~P~eV~~dp 241 (250)
T COG0411 232 GTPEEVRNNP 241 (250)
T ss_pred CCHHHHhcCH
Confidence 9999999775
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=336.08 Aligned_cols=200 Identities=30% Similarity=0.432 Sum_probs=165.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC---------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 681 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g--------------- 681 (1496)
.++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFH---GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEEC---CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 378999999995 35799999999999999999999999999999999999999999998865
Q ss_pred ------eeEEEccCCccCC-CcHHHHhccCC----CCCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChH
Q 039402 682 ------TKAYVAQSPWIQS-GKIEDNILFGK----EMNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGG 746 (1496)
Q Consensus 682 ------~~~yv~Q~~~i~~-~ti~eNI~~g~----~~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 746 (1496)
.++|++|++.++. .|++||+.++. ..+.+ +..+.++..++ .......+.+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL-----------AGKETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------cchhhCChhhCChH
Confidence 2689999998875 69999998642 12221 12222333222 22235677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecC
Q 039402 747 QKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGK 824 (1496)
Q Consensus 747 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~ 824 (1496)
||||++||||++.+|+++||||||++||+.+...+.+ ++..+ .+++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN-TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999888875 44444 358999999999999865 99999999999999999
Q ss_pred hHHHHhc
Q 039402 825 YNDLINS 831 (1496)
Q Consensus 825 ~~~l~~~ 831 (1496)
.+++.+.
T Consensus 228 ~~~~~~~ 234 (250)
T PRK11264 228 AKALFAD 234 (250)
T ss_pred HHHHhcC
Confidence 9887643
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=352.83 Aligned_cols=187 Identities=28% Similarity=0.425 Sum_probs=157.8
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC-----------------eeEEEccCCccCC-C
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-----------------TKAYVAQSPWIQS-G 695 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g-----------------~~~yv~Q~~~i~~-~ 695 (1496)
++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| .++||+|++.++. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 479999999999999999999999999999999999999999999986 2689999999886 5
Q ss_pred cHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEec
Q 039402 696 KIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDD 768 (1496)
Q Consensus 696 ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDe 768 (1496)
|++|||.++.. ++. ++..++++.+++.+ .......+|||||||||+|||||+.+|+++||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~-----------~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLEN-----------YAHSYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-----------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998642 222 22334444444432 2345668999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 769 PFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 769 p~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
||++||+.+.+.+.+.+.+... .++|+|+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999988765444333 48999999999998765 999999999999999999998764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=338.39 Aligned_cols=203 Identities=28% Similarity=0.431 Sum_probs=169.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~ 683 (1496)
.++++|++++|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 588999999996332346999999999999999999999999999999999999999999999873 5
Q ss_pred EEEccCCc--cCCCcHHHHhccCCC---CCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHH
Q 039402 684 AYVAQSPW--IQSGKIEDNILFGKE---MNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754 (1496)
Q Consensus 684 ~yv~Q~~~--i~~~ti~eNI~~g~~---~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 754 (1496)
+|++|+|. ++..|+.|||.++.. ...+ +++++++.+++.+. ......+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDF-----------KTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhH-----------hhCCcccCCHHHHHHHHHH
Confidence 89999984 667899999987532 2222 23344455444322 2345689999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-C-CcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhc
Q 039402 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-S-SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
||++.+|+++||||||++||+.+.+.+.+ ++..+. + |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMR-VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999988875 444443 3 8999999999999878999999999999999999888654
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=334.21 Aligned_cols=199 Identities=28% Similarity=0.428 Sum_probs=166.1
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~ 683 (1496)
.++++|++++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLG---GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 378899999995 357999999999999999999999999999999999999999999999883 5
Q ss_pred EEEccCCcc-CCCcHHHHhccCCC-C--C----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHH
Q 039402 684 AYVAQSPWI-QSGKIEDNILFGKE-M--N----RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 755 (1496)
Q Consensus 684 ~yv~Q~~~i-~~~ti~eNI~~g~~-~--~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR 755 (1496)
+|++|++.+ +..|++||+.++.. . + +++.++.++..++.+ .......+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH-----------LAGRDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHHHHHHH
Confidence 899999987 56799999988642 1 1 122333444444432 234567899999999999999
Q ss_pred HHc------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHH--hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChH
Q 039402 756 ALY------QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL--LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 826 (1496)
Q Consensus 756 Al~------~~~~illLDep~saLD~~~~~~i~~~~~~~~--~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 826 (1496)
|++ .+|+++||||||++||+.+...+.+ ++..+ .+++|||++||+++.+.. ||+|++|++|++++.|+++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR-LARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPA 226 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHH
Confidence 999 5999999999999999999888865 45444 358999999999999874 9999999999999999988
Q ss_pred HHHh
Q 039402 827 DLIN 830 (1496)
Q Consensus 827 ~l~~ 830 (1496)
++..
T Consensus 227 ~~~~ 230 (258)
T PRK13548 227 EVLT 230 (258)
T ss_pred HHhC
Confidence 8754
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=382.46 Aligned_cols=207 Identities=26% Similarity=0.279 Sum_probs=149.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHH---------HHhcccCCCc----c----EEEEC
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQ---------TLFRIVEPAA----G----QILID 1307 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~---------~L~rl~ep~~----G----~I~ID 1307 (1496)
.++++|++. ..|+|+|++|++||.+||.|++|||||||++ .|.|...+.. + -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 588888762 2799999999999999999999999999999 4455432211 1 24555
Q ss_pred CeeCCCCCh----------HHHh---------cccE-----EEccc------------------c---------------
Q 039402 1308 GIDISLIGL----------HDLR---------SRLS-----IIPQD------------------P--------------- 1330 (1496)
Q Consensus 1308 G~dI~~i~l----------~~LR---------~~i~-----iIpQd------------------p--------------- 1330 (1496)
-.+|..-+. +++| ++.+ +..|. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 555443211 2455 1111 12221 1
Q ss_pred -----ccccc-chhhccCCCCC-C-----cHHHHHH---HHHHcCCcHHHHhccCCcccc-cccCCCCCCchHHHHHHHH
Q 039402 1331 -----VMFEG-TVRSNLDPLEE-S-----TDEQIWE---ALDKCQLGDEVRKKEGKLDSK-VTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1331 -----~LF~g-TIR~NLdp~~~-~-----sd~eI~~---aL~~~~L~~~i~~lp~gLdt~-v~e~G~nLS~GQrQll~LA 1394 (1496)
+.+.+ ||.|||+.... + +.+++.+ +|+.+ ||+.. .+.....||||||||++||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~v-----------GL~~l~l~q~~~tLSGGE~QRV~LA 821 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSL-----------GLDYLPLGRPLSSLSGGEIQRLKLA 821 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHc-----------CCcchhhcCccccCCHHHHHHHHHH
Confidence 13334 77777764211 0 1222322 33333 34432 4556678999999999999
Q ss_pred HHHc---cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEEe------CCeEeEecCh
Q 039402 1395 RVLL---KRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLLN------HGLIEEFDNP 1464 (1496)
Q Consensus 1395 RALL---r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL~------~G~IvE~g~p 1464 (1496)
|||+ ++|+++||||||++||+.+.+.+.+.|++.. ++.|||+|+|+++.+..||+|++|+ +|++++.|+|
T Consensus 822 raL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 822 YELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred HHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 9998 5999999999999999999999999998864 4789999999999998899999996 7999999999
Q ss_pred hhHhh
Q 039402 1465 ANLLE 1469 (1496)
Q Consensus 1465 ~~Ll~ 1469 (1496)
+++..
T Consensus 902 eel~~ 906 (1809)
T PRK00635 902 EELIH 906 (1809)
T ss_pred HHHHh
Confidence 99986
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=329.86 Aligned_cols=197 Identities=25% Similarity=0.395 Sum_probs=162.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++|+++.|. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~i~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 6 PLLQLQNVGYLAG---DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred ceEEEeccEEeeC---CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 3589999999995 357999999999999999999999999999999999999999999999873
Q ss_pred eEEEccCCccCCCcHHHHhccCCCC-----CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 683 KAYVAQSPWIQSGKIEDNILFGKEM-----NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 683 ~~yv~Q~~~i~~~ti~eNI~~g~~~-----~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
++|++|++.+++.|++||+.++..+ ++++..+.++.+++. .+...+.+.+|||||||||+||||+
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHH
Confidence 6899999999988999999874211 122233333333332 1234677889999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCccccCCEEEEEe-CCeEEEecChH
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPAADLILVMK-DGKITQAGKYN 826 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~~d~i~~l~-~G~i~~~G~~~ 826 (1496)
+++|+++||||||++||+.+...+.+ ++... . .++|+|++||++++++.||++++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNE-IIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999887765 45444 3 3899999999999988899999995 66677778764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=336.69 Aligned_cols=208 Identities=24% Similarity=0.371 Sum_probs=167.3
Q ss_pred cEEEEeeEEEecCC------CCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------
Q 039402 617 ALDIVDGNFSWDIS------SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------- 682 (1496)
.++++|+++.|+.. .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37889999999532 1357999999999999999999999999999999999999999999999872
Q ss_pred --------eEEEccCCc--cC-CCcHHHHhccCC----CCCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCC
Q 039402 683 --------KAYVAQSPW--IQ-SGKIEDNILFGK----EMNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINL 743 (1496)
Q Consensus 683 --------~~yv~Q~~~--i~-~~ti~eNI~~g~----~~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~L 743 (1496)
++|++|+|. ++ ..|++||+.++. .++. ++..++++..++.. ...+.++.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhC
Confidence 699999973 33 469999996542 1222 12223333333321 1235677899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-C-CcEEEEEccCcCcccc-CCEEEEEeCCeEE
Q 039402 744 SGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-S-SKTVIYVTHQVEFLPA-ADLILVMKDGKIT 820 (1496)
Q Consensus 744 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 820 (1496)
|||||||++||||++++|+++||||||++||+.+...+.+ ++..+. + ++|+|++||+++.+.. ||++++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE-LLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE
Confidence 9999999999999999999999999999999999887765 454443 3 8999999999999875 9999999999999
Q ss_pred EecChHHHHhcCcch
Q 039402 821 QAGKYNDLINSGTDF 835 (1496)
Q Consensus 821 ~~G~~~~l~~~~~~~ 835 (1496)
+.|+.+++......+
T Consensus 231 ~~g~~~~~~~~~~~~ 245 (265)
T TIGR02769 231 EECDVAQLLSFKHPA 245 (265)
T ss_pred EECCHHHHcCCCCHH
Confidence 999999987643333
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=366.65 Aligned_cols=212 Identities=25% Similarity=0.398 Sum_probs=185.1
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHh-ccc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR-SRL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR-~~i 1323 (1496)
.|+++|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+++ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999964 3599999999999999999999999999999999999999999999999999888777665 469
Q ss_pred EEEccccccccc-chhhccCCCCC---CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPLEE---STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~~~---~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
+++||+|.+|.+ |+++|+..... ..++++.++++..++.+.. +. ...+||||||||++|||||++
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL-------DS----SAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc-------cC----ChhhCCHHHHHHHHHHHHHHc
Confidence 999999998876 99999974221 1235677788888775432 22 235799999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
+|+||||||||++||+.+...+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998864 47899999999999876 99999999999999999999864
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=332.13 Aligned_cols=203 Identities=23% Similarity=0.360 Sum_probs=165.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC--------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------T 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g--------------~ 682 (1496)
.++++++++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYK---GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 478899999995 35799999999999999999999999999999999999999999999987 2
Q ss_pred eEEEccCCccCC-CcHHHHhccCCCC----CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 683 KAYVAQSPWIQS-GKIEDNILFGKEM----NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 683 ~~yv~Q~~~i~~-~ti~eNI~~g~~~----~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
++|++|++.++. .|++||+.++... +.+..+.. ..+.++.+ |..........+||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDR-----ANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHH-----HHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 689999998876 5999999875321 22111111 11223332 222334667789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
+.+|+++||||||++||+.+...+.+ ++..+ .+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKR-IIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999888765 44444 358999999999988765 99999999999999999988754
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=330.21 Aligned_cols=205 Identities=21% Similarity=0.315 Sum_probs=165.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYG---KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeC---CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 488999999985 357999999999999999999999999999999999999999999999873
Q ss_pred eEEEccCCccCC-CcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 683 KAYVAQSPWIQS-GKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 683 ~~yv~Q~~~i~~-~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
++|++|++.++. .|++||+.++.. .+.+...+.++ +-++.++..++ ...+...+||||||||++||||++.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~l~~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFPRLHE-RRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHH-----HHHHHHHHHHH-HHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 589999998887 499999988642 12222221111 11111111111 12356789999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999888876443333458999999999998755 99999999999999999988863
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=334.01 Aligned_cols=204 Identities=27% Similarity=0.409 Sum_probs=168.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCC-----ccEEEEcC----------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI-----SGTLKLCG---------- 681 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~-----~G~i~~~g---------- 681 (1496)
.++++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~~l~~~~~---~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEEC---CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 588999999995 357999999999999999999999999999999999999987 69998865
Q ss_pred -----eeEEEccCCccCCCcHHHHhccCCCC----CHHH----HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 682 -----TKAYVAQSPWIQSGKIEDNILFGKEM----NRER----YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 682 -----~~~yv~Q~~~i~~~ti~eNI~~g~~~----~~~~----~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
.++|++|++.+++.|++||+.++... .+++ ..++++..++.+.+ .+..++.+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHH
Confidence 26899999999988999999986421 1111 22223333332211 1235678899999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 827 (1496)
||++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE-LMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 99999999999999999999999999999888765 55555568999999999999876 89999999999999999988
Q ss_pred HHhc
Q 039402 828 LINS 831 (1496)
Q Consensus 828 l~~~ 831 (1496)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 7543
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=335.54 Aligned_cols=204 Identities=28% Similarity=0.421 Sum_probs=168.6
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC-----CCccEEEEcCe---------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCGT--------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~i~~~g~--------- 682 (1496)
.++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 478999999995 3579999999999999999999999999999999999997 47999998773
Q ss_pred ------eEEEccCCccCCCcHHHHhccCCCC----CH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 ------KAYVAQSPWIQSGKIEDNILFGKEM----NR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 ------~~yv~Q~~~i~~~ti~eNI~~g~~~----~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++|++|++.+++.|++||+.++... ++ ++..++++.+++.++. ....++.+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 5899999999989999999876321 11 2233344444442211 1123567789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 827 (1496)
||++||||++++|+++||||||++||+.+.+.+.+ ++..+.+++|+|++||+++++.. ||+|++|++|++++.|+.++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEE-TLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHH-HHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999888765 45555567999999999999765 99999999999999999988
Q ss_pred HHhc
Q 039402 828 LINS 831 (1496)
Q Consensus 828 l~~~ 831 (1496)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14251 233 MFIA 236 (251)
T ss_pred HHhC
Confidence 7643
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=336.07 Aligned_cols=202 Identities=23% Similarity=0.369 Sum_probs=167.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~ 683 (1496)
.++++|+++.|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999632 246999999999999999999999999999999999999999999999883 5
Q ss_pred EEEccCCc--cCCCcHHHHhccCCC---CCHHH----HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHH
Q 039402 684 AYVAQSPW--IQSGKIEDNILFGKE---MNRER----YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754 (1496)
Q Consensus 684 ~yv~Q~~~--i~~~ti~eNI~~g~~---~~~~~----~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 754 (1496)
+|++|+|+ ++..|+++|+.++.. ...+. ..++++..++.+ ....++.+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLE-----------RADYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhhCCcccCCHHHHHHHHHH
Confidence 89999995 456689999988632 22222 223333333322 23456789999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-C-CcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhc
Q 039402 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-S-SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
||++.+|+++||||||++||+.+.+.+++ +++.+. + ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLD-LVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999988875 444443 3 7999999999998877999999999999999999887643
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=331.91 Aligned_cols=199 Identities=28% Similarity=0.417 Sum_probs=164.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYG---AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEEC---CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 368899999995 357999999999999999999999999999999999999999999999763
Q ss_pred -----eEEEccCCccCC-CcHHHHhccCC----CCCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 -----KAYVAQSPWIQS-GKIEDNILFGK----EMNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 -----~~yv~Q~~~i~~-~ti~eNI~~g~----~~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++|++|++.++. .|++|||.++. ....+ +..+.++..++ ....+....+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRL-----------KPYADRFPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHH
Confidence 589999998876 49999997421 11111 12222232222 2334566789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 826 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 826 (1496)
||++||||++.+|+++||||||++||+.+...+.+ +++... +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~ 226 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS-IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999888875 454443 58999999999999865 9999999999999999988
Q ss_pred HHHh
Q 039402 827 DLIN 830 (1496)
Q Consensus 827 ~l~~ 830 (1496)
++.+
T Consensus 227 ~~~~ 230 (242)
T PRK11124 227 CFTQ 230 (242)
T ss_pred HhcC
Confidence 7643
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=333.66 Aligned_cols=203 Identities=28% Similarity=0.402 Sum_probs=168.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC-----CccEEEEcCe---------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCGT--------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~i~~~g~--------- 682 (1496)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|..++ ++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEEC---CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 478999999995 35799999999999999999999999999999999998763 6999999862
Q ss_pred ------eEEEccCCccCCCcHHHHhccCCCC----CH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 ------KAYVAQSPWIQSGKIEDNILFGKEM----NR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 ------~~yv~Q~~~i~~~ti~eNI~~g~~~----~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++|++|++.+++.|++||+.++... +. ++..+.++.+++.+++. ...++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 5899999998889999999886321 11 22233344444432222 234567889999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 827 (1496)
||++||||++.+|+++||||||++||+.+...+.+ ++....+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEE-LIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999888764 55555568999999999998765 99999999999999999888
Q ss_pred HHh
Q 039402 828 LIN 830 (1496)
Q Consensus 828 l~~ 830 (1496)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14240 232 LFT 234 (250)
T ss_pred HHh
Confidence 754
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=338.06 Aligned_cols=199 Identities=24% Similarity=0.364 Sum_probs=164.7
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe---------------
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------------- 682 (1496)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 67899999995 357999999999999999999999999999999999999999999998773
Q ss_pred eEEEccCCc--cCCCcHHHHhccCC---CCCHHH----HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 KAYVAQSPW--IQSGKIEDNILFGK---EMNRER----YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 ~~yv~Q~~~--i~~~ti~eNI~~g~---~~~~~~----~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
++|++|++. ++..|+.||+.++. ..+.++ ..++++..++.+. ......+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF-----------RHQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhH-----------hcCCchhCCHHHHHHHHH
Confidence 589999985 46678999998742 122222 2233444443221 235678999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
||||+.+|+++||||||++||+.+...+.+ ++..+ .+++|+|++||+++.+.. ||++++|++|++++.|+.+++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIA-IIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999888875 44443 358999999999999865 999999999999999999887543
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=337.53 Aligned_cols=203 Identities=27% Similarity=0.397 Sum_probs=170.3
Q ss_pred cEEEEeeEEEecCCC---CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------
Q 039402 617 ALDIVDGNFSWDISS---HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~---~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~----------- 682 (1496)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 588999999996321 357999999999999999999999999999999999999999999999872
Q ss_pred ---eEEEccCCc--cCCCcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHH
Q 039402 683 ---KAYVAQSPW--IQSGKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750 (1496)
Q Consensus 683 ---~~yv~Q~~~--i~~~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 750 (1496)
++|++|+|. ++..|+.||+.|+.. .+. ++.+++++.+++.+. .+....+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEY-----------RRHAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhH-----------hhCCcccCCHHHHHH
Confidence 589999985 566789999998632 222 334445555555433 345568999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHH
Q 039402 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l 828 (1496)
++||||++.+|+++||||||++||+.+...+.+ ++..+ . .|+|+|++||+++.+..||++++|++|++++.|+++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVN-TIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999998875 45544 3 38999999999999877999999999999999999988
Q ss_pred Hhc
Q 039402 829 INS 831 (1496)
Q Consensus 829 ~~~ 831 (1496)
...
T Consensus 232 ~~~ 234 (280)
T PRK13633 232 FKE 234 (280)
T ss_pred hcC
Confidence 653
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=333.83 Aligned_cols=204 Identities=25% Similarity=0.402 Sum_probs=170.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC-----CccEEEEcCe---------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCGT--------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~i~~~g~--------- 682 (1496)
.++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|..+| ++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEEC---CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 578999999995 35799999999999999999999999999999999999875 7999999762
Q ss_pred ------eEEEccCCccCCCcHHHHhccCCCC----CH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 ------KAYVAQSPWIQSGKIEDNILFGKEM----NR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 ------~~yv~Q~~~i~~~ti~eNI~~g~~~----~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++|++|++.++..|++||+.|+... +. ++..++++.+++.+++. ...+....+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence 5899999999999999999876321 11 22334555555533222 123567789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 827 (1496)
||++||||++.+|+++||||||++||+.+...+.+ ++....+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIED-LMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999888865 55555557999999999999876 99999999999999999988
Q ss_pred HHhc
Q 039402 828 LINS 831 (1496)
Q Consensus 828 l~~~ 831 (1496)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14270 233 IFLE 236 (251)
T ss_pred HhcC
Confidence 7644
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=368.25 Aligned_cols=212 Identities=23% Similarity=0.343 Sum_probs=181.9
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC--CccEEEECCeeCCCCChHH-Hhc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP--AAGQILIDGIDISLIGLHD-LRS 1321 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep--~~G~I~IDG~dI~~i~l~~-LR~ 1321 (1496)
-|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+..+ .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 5999999999964 3599999999999999999999999999999999999996 8999999999998777655 467
Q ss_pred ccEEEccccccccc-chhhccCCCC------CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 039402 1322 RLSIIPQDPVMFEG-TVRSNLDPLE------EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1390 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~g-TIR~NLdp~~------~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQl 1390 (1496)
+++|+||+|.+|.. |+++|+.... ..+ .+++.+++++.++.+. ++. ...+||||||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~----~~~~LSgGqkqr 151 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN-------PAT----PVGNLGLGQQQL 151 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC-------ccc----chhhCCHHHHHH
Confidence 89999999998875 9999997421 112 2346677777766432 222 235799999999
Q ss_pred HHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1391 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
++|||||+++|+|||||||||+||+.+...+.+.|++.. ++.|||+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999999998864 46899999999999876 9999999999999999998875
Q ss_pred h
Q 039402 1469 E 1469 (1496)
Q Consensus 1469 ~ 1469 (1496)
.
T Consensus 232 ~ 232 (506)
T PRK13549 232 E 232 (506)
T ss_pred H
Confidence 3
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=336.51 Aligned_cols=200 Identities=26% Similarity=0.357 Sum_probs=166.5
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 10 ~~l~i~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 10 TTFALRNVSFRVP---GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred ceEEEeeEEEEEC---CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 4689999999995 357999999999999999999999999999999999999999999999883
Q ss_pred eEEEccCCccCC-CcHHHHhccCCC--------CC---HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHH
Q 039402 683 KAYVAQSPWIQS-GKIEDNILFGKE--------MN---RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750 (1496)
Q Consensus 683 ~~yv~Q~~~i~~-~ti~eNI~~g~~--------~~---~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 750 (1496)
++|++|++.++. .|+.||+.++.. .. +++..+.++.+++.+. ......+||||||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qr 155 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPL-----------AHRLVDSLSGGERQR 155 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCCHHHHHH
Confidence 689999976654 599999987531 11 1233444555554332 244567899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHH
Q 039402 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 827 (1496)
++||||++.+|+++||||||++||+.+.+.+.+ ++..+ .+ ++|+|++||+++++.. ||+|++|++|++++.|+.++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~-~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLA-LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 999999999999999999999999999888765 44444 33 7999999999999865 99999999999999999888
Q ss_pred HHh
Q 039402 828 LIN 830 (1496)
Q Consensus 828 l~~ 830 (1496)
+..
T Consensus 235 ~~~ 237 (265)
T PRK10575 235 LMR 237 (265)
T ss_pred hcC
Confidence 754
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=327.73 Aligned_cols=189 Identities=26% Similarity=0.384 Sum_probs=155.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe---------------
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------------- 682 (1496)
++++|+++.|+. .+++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPN--GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 367899999852 257999999999999999999999999999999999999999999999873
Q ss_pred -eEEEccCCccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 -KAYVAQSPWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 -~~yv~Q~~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
++|++|++.++. .|++||+.++.. .+. ++..+.++.+++.+. ......+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHK-----------HRALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhcCHHHHHHHHH
Confidence 689999998887 599999987532 122 223344444444322 234567999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeE
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKI 819 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 819 (1496)
|||++.+|+++||||||++||+++.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999888875443333458999999999999875 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=325.46 Aligned_cols=189 Identities=29% Similarity=0.437 Sum_probs=156.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~yv 686 (1496)
++++|++++|+. +. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 468899999852 22 3999999999999999999999999999999999999999999883 6999
Q ss_pred ccCCccCCC-cHHHHhccCCCC-------CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 039402 687 AQSPWIQSG-KIEDNILFGKEM-------NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 758 (1496)
Q Consensus 687 ~Q~~~i~~~-ti~eNI~~g~~~-------~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 758 (1496)
+|++.++.. |++||+.++... ++++..++++.+++.+.. .....+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-----------KRLPGELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHH-----------hCCcccCCHHHHHHHHHHHHHh
Confidence 999998865 999999876421 122344455555554332 3455789999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEec
Q 039402 759 QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823 (1496)
Q Consensus 759 ~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 823 (1496)
.+|+++||||||++||+++...+.+. +..+ . .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDL-VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999888654 4444 3 38999999999999876 9999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=323.97 Aligned_cols=187 Identities=31% Similarity=0.437 Sum_probs=161.2
Q ss_pred ceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------------eEEEccCCccC-CCc
Q 039402 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------------KAYVAQSPWIQ-SGK 696 (1496)
Q Consensus 635 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------------~~yv~Q~~~i~-~~t 696 (1496)
-++|+||+|+.||+.+|.|-||||||||++++.++++|++|+|.++|. +++|+|+.-++ ..|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 478999999999999999999999999999999999999999999984 48999998775 469
Q ss_pred HHHHhccCCCCC----HHH---HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecC
Q 039402 697 IEDNILFGKEMN----RER---YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDP 769 (1496)
Q Consensus 697 i~eNI~~g~~~~----~~~---~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep 769 (1496)
|.||+.||.+.. +++ ..+.++..+|+..- ...+.+||||+||||.|||||..||||+|+|||
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~-----------~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYA-----------DKYPNELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhh-----------hcCcccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 999999997632 333 33445555554433 355689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcc-ccCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 770 FSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 770 ~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
||||||--...+-+++++...+ +||+|+||||+++. +..|||.+|+||+|++.|+++|++.+.
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCc
Confidence 9999999999887777755433 79999999999885 569999999999999999999998654
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=344.54 Aligned_cols=188 Identities=22% Similarity=0.335 Sum_probs=157.9
Q ss_pred CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------eEEEccCCccCCC-cHH
Q 039402 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------KAYVAQSPWIQSG-KIE 698 (1496)
Q Consensus 632 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------~~yv~Q~~~i~~~-ti~ 698 (1496)
++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++.. |++
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 357999999999999999999999999999999999999999999999883 6999999988764 999
Q ss_pred HHhccCCC---CC----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC
Q 039402 699 DNILFGKE---MN----RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS 771 (1496)
Q Consensus 699 eNI~~g~~---~~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s 771 (1496)
||+.+... .+ +++..++++.+++.+ ....+..+||||||||++||||++++|+++||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGE-----------AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99987421 12 123344455544432 2245678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 772 AVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 772 aLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
+||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|+++..|+++++.+
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999888876443333458999999999999875 99999999999999999988764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=335.79 Aligned_cols=202 Identities=21% Similarity=0.292 Sum_probs=167.9
Q ss_pred CccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------
Q 039402 615 ETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1496)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------ 682 (1496)
...+.++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~~~l~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 5 VARLRGEQLTLGYG---KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred ccEEEEEEEEEEEC---CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 34689999999996 357999999999999999999999999999999999999999999999873
Q ss_pred -eEEEccCCccC-CCcHHHHhccCC-CC-------CH---HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHH
Q 039402 683 -KAYVAQSPWIQ-SGKIEDNILFGK-EM-------NR---ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 749 (1496)
Q Consensus 683 -~~yv~Q~~~i~-~~ti~eNI~~g~-~~-------~~---~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 749 (1496)
++|++|++.++ +.|++||+.++. +. .+ ++..++++..++.+ .....+.+|||||||
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Gq~q 150 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH-----------LADQSVDTLSGGQRQ 150 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-----------HhcCCcccCChHHHH
Confidence 68999999876 469999998752 11 11 22333444444432 234677899999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHH
Q 039402 750 RIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 827 (1496)
|++||||++.+|+++||||||++||+.+...+.+.+..... .++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 151 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 151 RAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999988764433223 37899999999998765 99999999999999999888
Q ss_pred HHh
Q 039402 828 LIN 830 (1496)
Q Consensus 828 l~~ 830 (1496)
+..
T Consensus 231 ~~~ 233 (265)
T PRK10253 231 IVT 233 (265)
T ss_pred Hhh
Confidence 754
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=328.11 Aligned_cols=188 Identities=23% Similarity=0.389 Sum_probs=155.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe---------------
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------------- 682 (1496)
++++|++++|+ +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~--~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeC--CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 67899999994 2357999999999999999999999999999999999999999999998772
Q ss_pred -eEEEccCCccCC-CcHHHHhccCCC---CC----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 -KAYVAQSPWIQS-GKIEDNILFGKE---MN----RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 -~~yv~Q~~~i~~-~ti~eNI~~g~~---~~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
++|++|+|.++. .|++||+.++.. .+ +++.++.++..++.+. ......+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHK-----------ADAFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHH
Confidence 589999999885 699999987521 22 1233344444444322 234557999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCe
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGK 818 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 818 (1496)
|||++.+|+++||||||++||+.+...+.+.+.....+++|+|++||+++++.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999988876444333358999999999999876 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=368.67 Aligned_cols=212 Identities=22% Similarity=0.313 Sum_probs=182.5
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHH-hccc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-RSRL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i 1323 (1496)
.|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |+++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999964 359999999999999999999999999999999999999999999999999988776554 4679
Q ss_pred EEEccccccccc-chhhccCCCC-------CC---c----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPLE-------ES---T----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~~-------~~---s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
+++||++.+|.+ |+++|+.... .. + ++++.++++++++.+. +|.+ ..+||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~~----~~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-------LDEK----VANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-------cccc----hhhCCHHHH
Confidence 999999988876 9999996311 10 1 2346677777776432 2322 357999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhh
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~ 1466 (1496)
||++|||||+++|+||||||||++||+.+...+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|++++.|++++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999999998864 46899999999999976 99999999999999999998
Q ss_pred Hhh
Q 039402 1467 LLE 1469 (1496)
Q Consensus 1467 Ll~ 1469 (1496)
++.
T Consensus 232 ~~~ 234 (510)
T PRK09700 232 VSN 234 (510)
T ss_pred CCH
Confidence 764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=327.96 Aligned_cols=195 Identities=27% Similarity=0.368 Sum_probs=159.8
Q ss_pred cEEEEeeEEEecCCCC-CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC--------------
Q 039402 617 ALDIVDGNFSWDISSH-NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------- 681 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g-------------- 681 (1496)
.++++|++++|+.... .++++|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999963221 3599999999999999999999999999999999999999999999876
Q ss_pred ---eeEEEccCCccCC-CcHHHHhccCCC---CC----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHH
Q 039402 682 ---TKAYVAQSPWIQS-GKIEDNILFGKE---MN----RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750 (1496)
Q Consensus 682 ---~~~yv~Q~~~i~~-~ti~eNI~~g~~---~~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 750 (1496)
.++|++|++.++. .|++||+.++.. .+ +++..+.++.+++.+. ......+||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKR-----------LDHLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhCChhhCCHHHHHH
Confidence 2689999998876 499999986421 12 2233444555554332 234567899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccccCCEEEEEeCCeEEEe
Q 039402 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPAADLILVMKDGKITQA 822 (1496)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 822 (1496)
++||||++.+|+++||||||++||+.+...+.+.+.+...+ ++|||++||+++++..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999988886544333233 7899999999998877999999999999753
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=333.57 Aligned_cols=200 Identities=29% Similarity=0.378 Sum_probs=165.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe---------------
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------------- 682 (1496)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 1 i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeC---CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 46889999995 357999999999999999999999999999999999999999999998762
Q ss_pred -----------eEEEccCCccCC-CcHHHHhccCCC----CCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCC
Q 039402 683 -----------KAYVAQSPWIQS-GKIEDNILFGKE----MNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGIN 742 (1496)
Q Consensus 683 -----------~~yv~Q~~~i~~-~ti~eNI~~g~~----~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~ 742 (1496)
++|++|++.++. .|+.||+.++.. .+.+ +..+.++..++ ....++.+.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGL-----------ADKADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhHhhcChhh
Confidence 689999998875 799999987521 2221 22233333333 2234567789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccc-cCCEEEEEeCCeEE
Q 039402 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLP-AADLILVMKDGKIT 820 (1496)
Q Consensus 743 LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~ 820 (1496)
||||||||++||||++++|+++||||||++||+.+...+++.+.+...+ ++|+|++||+++.+. .||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999988887543333333 899999999999986 49999999999999
Q ss_pred EecChHHHHhc
Q 039402 821 QAGKYNDLINS 831 (1496)
Q Consensus 821 ~~G~~~~l~~~ 831 (1496)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999888643
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=326.96 Aligned_cols=187 Identities=34% Similarity=0.506 Sum_probs=153.4
Q ss_pred EEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eEEE
Q 039402 620 IVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYV 686 (1496)
Q Consensus 620 ~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~yv 686 (1496)
++|+++.|+.. .+++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|. ++|+
T Consensus 2 ~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 57888888521 257999999999999999999999999999999999999999999999873 5899
Q ss_pred ccCCc--cCCCcHHHHhccCCC---CCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 687 AQSPW--IQSGKIEDNILFGKE---MNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 687 ~Q~~~--i~~~ti~eNI~~g~~---~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
+|++. +++.|++||+.++.. .+.. +..+.++..++.+ ...++..+||||||||++||||+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEG-----------LRDRSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCHHHHHHHHHHHHH
Confidence 99983 567899999987532 2221 2233344333322 23466789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCe
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGK 818 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 818 (1496)
+.+|+++||||||++||+.+...+.+.+.+...+++|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999998876543333358999999999999876 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=332.92 Aligned_cols=204 Identities=26% Similarity=0.380 Sum_probs=167.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC-----CccEEEEcCe---------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCGT--------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~i~~~g~--------- 682 (1496)
.++++|++++|+ ++++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEEC---CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 478999999995 35799999999999999999999999999999999999974 7999999873
Q ss_pred ----eEEEccCCccC-CCcHHHHhccCCCC-----CHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 ----KAYVAQSPWIQ-SGKIEDNILFGKEM-----NRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 ----~~yv~Q~~~i~-~~ti~eNI~~g~~~-----~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++|++|++.++ +.|++||+.++... ..+ +..+.++.+++.+.+ .........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-------KDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCCcccCCHHHH
Confidence 58999999754 67999999876321 111 223334444442211 1223566789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~ 827 (1496)
|||+||||++++|+++||||||++||+.+...+.+. +....+++|+|++||+++.+. .||++++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESL-FLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 999999999999999999999999999999888754 444456899999999999986 499999999999999999988
Q ss_pred HHhc
Q 039402 828 LINS 831 (1496)
Q Consensus 828 l~~~ 831 (1496)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14247 232 VFTN 235 (250)
T ss_pred HHcC
Confidence 7643
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=341.94 Aligned_cols=199 Identities=23% Similarity=0.407 Sum_probs=168.3
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------eEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------KAY 685 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------~~y 685 (1496)
++++|++++|. ++.+|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|. ++|
T Consensus 3 l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEE
Confidence 78999999995 357999999999999999999999999999999999999999999999883 699
Q ss_pred EccCCccCCC-cHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 686 VAQSPWIQSG-KIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 686 v~Q~~~i~~~-ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
+||++.++.. |++||+.+... .+. ++.+++++..++. ...+++..+||||||||++||||+
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-----------PEQHKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCchhhCCHHHHHHHHHHHHH
Confidence 9999998865 99999975321 121 2233333333332 234567789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
+++|+++||||||++||+.+.+.+++ .+..+.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~-~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRN-VIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999988875 45555568999999999998876 999999999999999999998643
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=366.57 Aligned_cols=212 Identities=23% Similarity=0.315 Sum_probs=181.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH-Hhccc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-LRSRL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i 1323 (1496)
-|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999997765544 46789
Q ss_pred EEEccccccccc-chhhccCCCC-------CCcH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPLE-------ESTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1391 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~~-------~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll 1391 (1496)
+++||+|.+|.. |+++|+.... ..+. +++.+++++.++.+. +|.+ ..+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~----~~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-------SDKL----VGELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-------ccCc----hhhCCHHHHHHH
Confidence 999999988875 9999997421 1121 345667777776432 2222 346999999999
Q ss_pred HHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1392 CLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1392 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
+|||||+.+|++|+|||||++||+.+.+.+.+.|++.. .+.|||+|+|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 99999999999999999999999999999999998753 46899999999999876 99999999999999999988753
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=337.65 Aligned_cols=200 Identities=32% Similarity=0.492 Sum_probs=166.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe---------------
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------------- 682 (1496)
++++|++++|+. .+++++|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 678999999952 346999999999999999999999999999999999999999999999872
Q ss_pred eEEEccCC--ccCCCcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 KAYVAQSP--WIQSGKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 ~~yv~Q~~--~i~~~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
++|++|+| .++..|++|||.++.. ... ++..++++.+++.. .....+.+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEG-----------FENKPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------hhcCChhhCCHHHHHHHHH
Confidence 58999997 5678899999987531 222 22333444444421 1235578999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
|||++.+|+++||||||++||+.+...+.+. +..+ .+++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKL-LYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999888754 4444 358999999999999874 999999999999999999887643
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=334.51 Aligned_cols=204 Identities=26% Similarity=0.401 Sum_probs=170.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC-----CCccEEEEcCe---------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCGT--------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~i~~~g~--------- 682 (1496)
.++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 10 ~l~i~~v~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYG---SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEEC---CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 589999999995 3479999999999999999999999999999999999976 47999998772
Q ss_pred ------eEEEccCCccCCCcHHHHhccCCCC---C---HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHH
Q 039402 683 ------KAYVAQSPWIQSGKIEDNILFGKEM---N---RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750 (1496)
Q Consensus 683 ------~~yv~Q~~~i~~~ti~eNI~~g~~~---~---~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 750 (1496)
++|++|++.+++.|++||+.++... . +++..++++.+++.+++. ...++.+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHH
Confidence 6899999999888999999886421 1 123334455555543332 12356788999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEe---------CCeEE
Q 039402 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMK---------DGKIT 820 (1496)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~---------~G~i~ 820 (1496)
++||||++.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++.+.. ||++++|+ +|+++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~ 238 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEE-LMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV 238 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999888764 55555557899999999999865 99999998 89999
Q ss_pred EecChHHHHhc
Q 039402 821 QAGKYNDLINS 831 (1496)
Q Consensus 821 ~~G~~~~l~~~ 831 (1496)
+.|+.+++.+.
T Consensus 239 ~~~~~~~~~~~ 249 (264)
T PRK14243 239 EFDRTEKIFNS 249 (264)
T ss_pred EeCCHHHHHhC
Confidence 99999998654
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=336.51 Aligned_cols=201 Identities=30% Similarity=0.463 Sum_probs=167.6
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~ 683 (1496)
.++++|++++|+. .+++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 4788999999952 346999999999999999999999999999999999999999999999873 6
Q ss_pred EEEccCCc--cCCCcHHHHhccCCC---CCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHH
Q 039402 684 AYVAQSPW--IQSGKIEDNILFGKE---MNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754 (1496)
Q Consensus 684 ~yv~Q~~~--i~~~ti~eNI~~g~~---~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 754 (1496)
+||+|+|. +++.|++||+.++.. .+.+ ++++.++.+++.+. .......||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEEL-----------RDRVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhH-----------hcCCcccCCHHHHHHHHHH
Confidence 89999983 667899999987532 3332 23344444444332 3455679999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hC-CcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHhc
Q 039402 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LS-SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
|||+.+|+++||||||++||+.+...+.+. +..+ .+ ++|+|++||+++++. .||++++|++|++++.|+++++...
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDF-LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 999999999999999999999998887654 4443 33 899999999999986 5999999999999999999988653
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=330.48 Aligned_cols=200 Identities=27% Similarity=0.397 Sum_probs=156.5
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC---------------
Q 039402 618 LDIVDGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--------------- 681 (1496)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g--------------- 681 (1496)
++++|++++|+..+ ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 67899999995311 12799999999999999999999999999999999999999999999977
Q ss_pred -eeEEEccCCc--cC-CCcHHHHhccCCC-----CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 682 -TKAYVAQSPW--IQ-SGKIEDNILFGKE-----MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 682 -~~~yv~Q~~~--i~-~~ti~eNI~~g~~-----~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
.++|++|++. ++ ..|++||+.++.. .+++..+++. .+.++.+... ....++...+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~-~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGVGLP-EEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHCCCC-hhHhhCCchhcCHHHHHHHH
Confidence 2689999983 33 5799999976421 1111111110 1122222211 12346777899999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccc-cCCEEEEEeCCeEEEec
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLP-AADLILVMKDGKITQAG 823 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G 823 (1496)
||||++.+|+++||||||++||+.+.+.+.+.+.+...+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999988886544333333 899999999999987 49999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=296.03 Aligned_cols=198 Identities=30% Similarity=0.448 Sum_probs=176.1
Q ss_pred eEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccc
Q 039402 1253 VRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVM 1332 (1496)
Q Consensus 1253 ~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~L 1332 (1496)
++|.....++|+|+||++.+||.++|.||||||||||++.+.-+..|++|.++..|.|+++++++.+|++++|+-|.|.|
T Consensus 9 ~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paL 88 (223)
T COG4619 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPAL 88 (223)
T ss_pred HHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccc
Confidence 35666666799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhccC-CCC----CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEE
Q 039402 1333 FEGTVRSNLD-PLE----ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLD 1407 (1496)
Q Consensus 1333 F~gTIR~NLd-p~~----~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLD 1407 (1496)
|.+||.+||- |.. ..+.+.-.+-|+++++.+.+-+ .+..+||||||||++|+|-|---|+||+||
T Consensus 89 fg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~----------k~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 89 FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILT----------KNITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred cccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhc----------chhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 9999999985 532 2334455677888887765533 345789999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcch-hcccCEEEEEeCCeEeE
Q 039402 1408 EATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITS-VIDSDLVLLLNHGLIEE 1460 (1496)
Q Consensus 1408 EaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~t-i~~~DrIlVL~~G~IvE 1460 (1496)
|+||+||+.+.+.|.+.|..++ ++..|+.|||+-.. +..+||++-+..|++-|
T Consensus 159 E~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 159 EITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred CchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 9999999999999999999988 46899999999987 78899999999998643
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=323.30 Aligned_cols=194 Identities=26% Similarity=0.371 Sum_probs=168.3
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ...|+++++
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 789999999964 35999999999999999999999999999999999999999999999999987654 457788999
Q ss_pred Ecccccccc-cchhhccCCCC----CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccC
Q 039402 1326 IPQDPVMFE-GTVRSNLDPLE----ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1400 (1496)
Q Consensus 1326 IpQdp~LF~-gTIR~NLdp~~----~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~ 1400 (1496)
+||++.++. .|+++|+.... ...++++.++++..++.+..... ...||+|||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP-----------VRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHHHHHHhcC
Confidence 999998886 59999996321 13456788899999987554322 357999999999999999999
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEE
Q 039402 1401 SKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLL 1453 (1496)
Q Consensus 1401 ~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL 1453 (1496)
|+||+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998864 46899999999999955 5677766
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=333.81 Aligned_cols=198 Identities=24% Similarity=0.388 Sum_probs=164.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~ 684 (1496)
++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|. ++
T Consensus 2 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAG---GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEEC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 67899999995 357999999999999999999999999999999999999999999999872 68
Q ss_pred EEccCCcc-CCCcHHHHhccCCC-C-------C---HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 685 YVAQSPWI-QSGKIEDNILFGKE-M-------N---RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 685 yv~Q~~~i-~~~ti~eNI~~g~~-~-------~---~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
|++|++.+ +..|++||+.++.. . . .++..++++.+++. ....+.+.+||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-----------HLADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCCHHHHHHHH
Confidence 99999854 56799999988631 1 0 11223333333332 2235667899999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
||||++.+|+++||||||++||+.+...+.+ +++.+ .+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLA-LVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999888865 45444 348999999999999864 99999999999999999888753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=335.27 Aligned_cols=205 Identities=24% Similarity=0.395 Sum_probs=169.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC-----CCccEEEEcCe--------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCGT-------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~i~~~g~-------- 682 (1496)
..++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|.++ |++|+|.++|.
T Consensus 23 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 23 VVFDTQNLNLWYG---EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred eEEEEeeeEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 3689999999995 3579999999999999999999999999999999999987 69999998872
Q ss_pred -------eEEEccCCccCCCcHHHHhccCCC---C-CHHHH----HHHHHHhchhhHHHhccCCCcccccCCCCCCChHH
Q 039402 683 -------KAYVAQSPWIQSGKIEDNILFGKE---M-NRERY----NAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQ 747 (1496)
Q Consensus 683 -------~~yv~Q~~~i~~~ti~eNI~~g~~---~-~~~~~----~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 747 (1496)
++|++|++.++..|++||+.++.. . +++.. .+.++..++.+++ ....++.+.+|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL-------KDRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH-------HHHHhcCcccCCHHH
Confidence 689999999998899999987532 1 11111 1222222221122 123467788999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChH
Q 039402 748 KQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 826 (1496)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 826 (1496)
|||++|||||+.+|+++||||||++||+.+...+.+ ++..+.+++|+|++||+++++.. ||++++|++|++++.|+++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEE-LVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999888865 55555568999999999999865 9999999999999999998
Q ss_pred HHHhc
Q 039402 827 DLINS 831 (1496)
Q Consensus 827 ~l~~~ 831 (1496)
++...
T Consensus 252 ~~~~~ 256 (271)
T PRK14238 252 KIFSN 256 (271)
T ss_pred HHHcC
Confidence 88654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=374.47 Aligned_cols=223 Identities=22% Similarity=0.328 Sum_probs=182.7
Q ss_pred eEEEEeEEeEeCCC--CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCC----------
Q 039402 1245 KIDLLDLQVRYAPQ--MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS---------- 1312 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~--~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~---------- 1312 (1496)
-|+++|++++|... ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 69999999999632 236999999999999999999999999999999999999999999999998652
Q ss_pred CCCh---HHHh-cccEEEcccc--cccc-cchhhccCCC----CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccc
Q 039402 1313 LIGL---HDLR-SRLSIIPQDP--VMFE-GTVRSNLDPL----EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVT 1377 (1496)
Q Consensus 1313 ~i~l---~~LR-~~i~iIpQdp--~LF~-gTIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~ 1377 (1496)
+.+. ..+| ++|++|+|+| .++. -||++|+... ...+ ++++.++|+.+++.+.- .-++
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----~~~~---- 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQ----TILS---- 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChh----hHHh----
Confidence 2222 2344 5799999999 5776 4999999621 1122 24577788888874310 0112
Q ss_pred cCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEe
Q 039402 1378 ENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLN 1454 (1496)
Q Consensus 1378 e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~ 1454 (1496)
....+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+.. ||||+||+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 23357999999999999999999999999999999999999999999998652 7899999999999876 99999999
Q ss_pred CCeEeEecChhhHhhcCCcHH
Q 039402 1455 HGLIEEFDNPANLLENKSSSF 1475 (1496)
Q Consensus 1455 ~G~IvE~g~p~~Ll~~~~s~F 1475 (1496)
+|+|++.|+++++++.+...|
T Consensus 244 ~G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred CCeecccCCHHHhhcCCCChh
Confidence 999999999999986554333
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=311.55 Aligned_cols=206 Identities=27% Similarity=0.430 Sum_probs=172.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++..|. ..++|++|||++++||+++++|+||+||||||++|+|..++.+|+|.++|+
T Consensus 3 mL~v~~l~~~YG---~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYG---KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeeccc---ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 478899999996 368999999999999999999999999999999999999999999999995
Q ss_pred eEEEccCCccCC-CcHHHHhccCCCCCHH-HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 683 KAYVAQSPWIQS-GKIEDNILFGKEMNRE-RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 683 ~~yv~Q~~~i~~-~ti~eNI~~g~~~~~~-~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
++||||.-.+|. .||+||+..|....+. +..+. .+++-.+.||. .....+.++.+|||||||-++|||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 499999999986 5999999988543221 11110 12333455553 22234788999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHh-C-CcEEEEEccCcCcc-ccCCEEEEEeCCeEEEecChHHHHhc
Q 039402 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-S-SKTVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
|++++||||+.+|-|...+.||+. +..+. + +.||++|-++..+. +.+||.++|++|+|+.+|+.+|+.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~-i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEA-IKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHH-HHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999965 44443 3 67999999999985 56999999999999999999999765
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=335.32 Aligned_cols=205 Identities=30% Similarity=0.465 Sum_probs=169.7
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC-----CCccEEEEcCe--------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCGT-------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~i~~~g~-------- 682 (1496)
..++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|.++ |++|+|.++|.
T Consensus 24 ~~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 24 TALEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred cEEEEEEEEEEEC---CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 4689999999995 3579999999999999999999999999999999999987 48999998762
Q ss_pred -------eEEEccCCccCCCcHHHHhccCCC---C-CH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHH
Q 039402 683 -------KAYVAQSPWIQSGKIEDNILFGKE---M-NR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQ 747 (1496)
Q Consensus 683 -------~~yv~Q~~~i~~~ti~eNI~~g~~---~-~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 747 (1496)
++|++|++.+++.|++||+.++.. . .+ ++..++++..++.+++. +..++++.+|||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHH
Confidence 589999999988899999987532 1 11 22333444444433222 23567889999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChH
Q 039402 748 KQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 826 (1496)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 826 (1496)
||||+||||++++|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++++.. ||++++|++|++++.|+++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEE-LITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999887764 55555557999999999999765 9999999999999999998
Q ss_pred HHHhc
Q 039402 827 DLINS 831 (1496)
Q Consensus 827 ~l~~~ 831 (1496)
++...
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 87643
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=333.04 Aligned_cols=204 Identities=27% Similarity=0.411 Sum_probs=166.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC-----CccEEEEcCe---------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCGT--------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~i~~~g~--------- 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYG---SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeC---CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 478999999995 35799999999999999999999999999999999999987 4999998762
Q ss_pred ------eEEEccCCccCCC-cHHHHhccCCCC-----CHH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChH
Q 039402 683 ------KAYVAQSPWIQSG-KIEDNILFGKEM-----NRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGG 746 (1496)
Q Consensus 683 ------~~yv~Q~~~i~~~-ti~eNI~~g~~~-----~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 746 (1496)
++|++|++.++.. |++||+.++... ..+ +..++++..++.+++. ....+...+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 5899999998865 999999875311 121 1223333333322111 2245678899999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecCh
Q 039402 747 QKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKY 825 (1496)
Q Consensus 747 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~ 825 (1496)
||||++||||++++|+++||||||++||+.+...+.+ ++....+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEE-LLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999888875 45444557999999999999765 999999999999999999
Q ss_pred HHHHhc
Q 039402 826 NDLINS 831 (1496)
Q Consensus 826 ~~l~~~ 831 (1496)
+++.+.
T Consensus 233 ~~~~~~ 238 (253)
T PRK14267 233 RKVFEN 238 (253)
T ss_pred HHHHhC
Confidence 887643
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=331.55 Aligned_cols=203 Identities=26% Similarity=0.387 Sum_probs=168.1
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC-----CccEEEEcCe---------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-----ISGTLKLCGT--------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~i~~~g~--------- 682 (1496)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++| ++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYG---ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEEC---CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 478999999995 35799999999999999999999999999999999999986 5999999772
Q ss_pred -----eEEEccCCccCCCcHHHHhccCCCC---C-HH----HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHH
Q 039402 683 -----KAYVAQSPWIQSGKIEDNILFGKEM---N-RE----RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 749 (1496)
Q Consensus 683 -----~~yv~Q~~~i~~~ti~eNI~~g~~~---~-~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 749 (1496)
++|++|++.++..|++||+.++... . ++ +..+.++..++.+++. +..++.+.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 5899999999889999999876321 1 11 2223333334433221 2345677899999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHH
Q 039402 750 RIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 828 (1496)
||+||||++.+|+++||||||++||+.+...+.+ ++....+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEE-LMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999888765 55555567999999999999876 999999999999999998877
Q ss_pred Hh
Q 039402 829 IN 830 (1496)
Q Consensus 829 ~~ 830 (1496)
..
T Consensus 232 ~~ 233 (249)
T PRK14253 232 FS 233 (249)
T ss_pred Hc
Confidence 53
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=332.70 Aligned_cols=204 Identities=27% Similarity=0.425 Sum_probs=167.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC-----CCccEEEEcCe---------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-----KISGTLKLCGT--------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~i~~~g~--------- 682 (1496)
.-+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|..+ |++|+|.++|.
T Consensus 5 ~~~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 5 HASVKNLNLWYG---SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EEEeeeEEEEEC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 357889999995 3579999999999999999999999999999999999986 47999999772
Q ss_pred ------eEEEccCCccCCCcHHHHhccCCC-----CCHHH----HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHH
Q 039402 683 ------KAYVAQSPWIQSGKIEDNILFGKE-----MNRER----YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQ 747 (1496)
Q Consensus 683 ------~~yv~Q~~~i~~~ti~eNI~~g~~-----~~~~~----~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 747 (1496)
++|++|++.++..|++||+.++.. .+.+. ..++++..++.+++ .+..+..+.+|||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq 154 (251)
T PRK14244 82 VLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQ 154 (251)
T ss_pred HHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHH
Confidence 589999999988899999987621 11111 22333433332211 123456788999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChH
Q 039402 748 KQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 826 (1496)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 826 (1496)
|||++||||++.+|+++||||||++||+.+...+.+ .+..+.+++|+|++||+++++.. ||++++|++|++++.|+.+
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (251)
T PRK14244 155 QQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIEN-LIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQ 233 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999887764 55555568999999999999875 9999999999999999998
Q ss_pred HHHhc
Q 039402 827 DLINS 831 (1496)
Q Consensus 827 ~l~~~ 831 (1496)
++.+.
T Consensus 234 ~~~~~ 238 (251)
T PRK14244 234 EIFKN 238 (251)
T ss_pred HHhcC
Confidence 87643
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=331.81 Aligned_cols=193 Identities=32% Similarity=0.487 Sum_probs=160.7
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------eEEEccC
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAYVAQS 689 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------~~yv~Q~ 689 (1496)
++++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|.++|++|+|.++|. ++|++|+
T Consensus 2 l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 2 LQISHLYADYG---GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred EEEEEEEEEeC---CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 67899999995 357999999999999999999999999999999999999999999999873 6899999
Q ss_pred CccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 039402 690 PWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761 (1496)
Q Consensus 690 ~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 761 (1496)
+.++. .|++||+.++.. .+. ++..++++..++.+ .....+.+||||||||++||||++.+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG-----------AEKRYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 98876 599999987531 222 22333444444422 234567899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCcccc-CCEEEEEe--CCeEEEecCh
Q 039402 762 DIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPA-ADLILVMK--DGKITQAGKY 825 (1496)
Q Consensus 762 ~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~d~i~~l~--~G~i~~~G~~ 825 (1496)
+++||||||++||+.+...+.+. +..+ . .|+|+|++||+++.+.. ||+|++|+ +|++++.++.
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTL-LLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999998888754 4443 3 48999999999999865 99999998 5999987764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1496 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-57 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 5e-08 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 4e-54 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-21 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-48 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-25 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-48 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-25 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-42 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 3e-06 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 4e-42 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-06 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-42 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-06 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-42 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-06 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 2e-41 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 6e-06 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-41 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 5e-06 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 8e-41 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 4e-06 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 3e-40 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-05 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 3e-40 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-06 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 4e-40 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-07 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 4e-40 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 3e-07 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-40 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-07 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 4e-38 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 6e-06 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-36 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 3e-35 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 6e-35 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-33 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-33 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-31 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 6e-28 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-27 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-26 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 7e-24 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-25 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-23 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-22 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-22 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 6e-22 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 6e-22 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-21 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-21 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-20 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-20 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 4e-17 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-15 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-15 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-15 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-15 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-04 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-15 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 6e-15 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-14 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-14 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-12 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-11 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 8e-11 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-07 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 8e-11 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-10 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-04 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-10 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-10 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-10 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-05 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-10 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 4e-10 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-09 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 6e-09 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 9e-09 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 9e-09 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-08 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 4e-08 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-04 | ||
| 1g29_1 | 372 | Malk Length = 372 | 5e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 5e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 5e-08 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 6e-08 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 1e-07 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-07 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 1e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 1e-06 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 2e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-06 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 5e-06 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 9e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-05 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 3e-05 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 5e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 9e-04 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 9e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 454 bits (1169), Expect = e-147
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 1/264 (0%)
Query: 1231 IEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLI 1290
+ +D WPS G++ + DL +Y +L+ IS + G++ G++GRTGSGKSTL+
Sbjct: 5 NSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLL 64
Query: 1291 QTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDE 1350
R++ G+I IDG+ I L R +IPQ +F GT R NLDP +D+
Sbjct: 65 SAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQ 123
Query: 1351 QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEAT 1410
+IW+ D+ L + + GKLD + + G S G +QL+CL R +L ++KIL+LDE +
Sbjct: 124 EIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPS 183
Query: 1411 ASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLEN 1470
A +D T +I++TL+Q F+DCTV+ RI ++++ D L++ + ++D+ L
Sbjct: 184 AHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY 243
Query: 1471 KSSSFSQLVAEYTLRSSSSFENLA 1494
+ F + + A
Sbjct: 244 PADRFVAGFIGSPKMNFLPVKVTA 267
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 5e-27
Identities = 57/287 (19%), Positives = 109/287 (37%), Gaps = 20/287 (6%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 683
L++I+ + G RV + G GSGKS+LLS L + G +++ G
Sbjct: 35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-NTEGEIQIDGVSWDSITLEQWR 93
Query: 684 ---AYVAQSPWIQSGKIEDNI-LFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGER 739
+ Q +I SG N+ ++E + D L+ +E V+ +
Sbjct: 94 KAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKV-ADEVGLRSVIEQFPGKLDFVLVDG 152
Query: 740 GINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVT 799
G LS G KQ + +AR++ + I L D+P + +D T + + L + TVI
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ-IIRRTLKQAFADCTVILCE 211
Query: 800 HQVEFLPAADLILVMKDGKITQAGKYNDLI-NSGTDFMELVGAHEQALLALGSIEGRPAS 858
++E + D LV+++ K+ Q +L F+ + ++ +
Sbjct: 212 ARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKM--NFLPVKVTATA 269
Query: 859 ERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQEEERE 905
++ VE+ Q + + L+ + +
Sbjct: 270 IDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIAD 316
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 418 bits (1077), Expect = e-135
Identities = 92/263 (34%), Positives = 149/263 (56%), Gaps = 5/263 (1%)
Query: 584 QTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGN--FSWDISSHNPTLKDINL 641
T+V ++ + +F ++ +L EK ++ D + FS P LKDIN
Sbjct: 2 TTEVVMENVTAF--WEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINF 59
Query: 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNI 701
K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q+ WI G I++NI
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENI 119
Query: 702 LFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761
+ G + RY +V+ AC L++D+ + D V+GE GI LSGGQ+ RI +ARA+Y+D+
Sbjct: 120 I-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178
Query: 762 DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQ 821
D+YL D PF +D T +F+ + L+++KT I VT ++E L AD IL++ +G
Sbjct: 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 238
Query: 822 AGKYNDLINSGTDFMELVGAHEQ 844
G +++L N DF + +
Sbjct: 239 YGTFSELQNLRPDFSSKLMGCDS 261
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 3e-29
Identities = 54/290 (18%), Positives = 114/290 (39%), Gaps = 34/290 (11%)
Query: 1212 ISVERI--FQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCT 1269
+ +E + F A + + + + + + P VL+ I+
Sbjct: 5 VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINFK 60
Query: 1270 FPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQD 1329
G+ + G TG+GK++L+ + +EP+ G+I G R+S Q+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQN 107
Query: 1330 PVMFEGTVRSNL--DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387
+ GT++ N+ +E + + CQL +++ K K + + E G S GQ
Sbjct: 108 SWIMPGTIKENIIGVSYDE---YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQ 164
Query: 1388 RQLVCLGRVLLKRSKILMLDEATASVDTAT-----DNLIQQTLRQHFSDCTVLTIAHRIT 1442
R + L R + K + + +LD +D T ++ + + + + T + + ++
Sbjct: 165 RARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA----NKTRILVTSKME 220
Query: 1443 SVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSFEN 1492
+ +D +L+L+ G + + L + FS + S E
Sbjct: 221 HLKKADKILILHEGSSYFYGTFSELQNLR-PDFSSKLMGCDSFDQFSAER 269
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 402 bits (1036), Expect = e-130
Identities = 108/231 (46%), Positives = 151/231 (65%), Gaps = 3/231 (1%)
Query: 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676
++ + + F+W S PTL I + G VAV G VG GKSSLLS +L E+ K+ G
Sbjct: 3 SITVRNATFTWA-RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 677 LKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVI 736
+ + G+ AYV Q WIQ+ + +NILFG ++ Y +V+ AC+L DLEIL GD+T I
Sbjct: 62 VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI 121
Query: 737 GERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL--GLLSSKT 794
GE+G+NLSGGQKQR+ +ARA+Y ++DIYLFDDP SAVDAH G H+F+ V+ G+L +KT
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKT 181
Query: 795 VIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQA 845
I VTH + +LP D+I+VM GKI++ G Y +L+ F E + +
Sbjct: 182 RILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASH 232
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 27/247 (10%)
Query: 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1303
I + + +A P L GI+ + P G +VG+ G GKS+L+ L ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1304 ILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIWEALDKCQ 1360
+ I G ++ +PQ + ++R N+ LEE + C
Sbjct: 62 VAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEE---PYYRSVIQACA 105
Query: 1361 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT--- 1417
L ++ +++ E G N S GQ+Q V L R + + I + D+ ++VD
Sbjct: 106 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165
Query: 1418 --DNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSF 1475
+N+I + + T + + H ++ + D++++++ G I E + LL +F
Sbjct: 166 IFENVIGP--KGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARD-GAF 222
Query: 1476 SQLVAEY 1482
++ + Y
Sbjct: 223 AEFLRTY 229
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 401 bits (1034), Expect = e-130
Identities = 86/225 (38%), Positives = 134/225 (59%), Gaps = 1/225 (0%)
Query: 614 SETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 673
+ T + + + W+ P LKDIN K+ G +AV G+ G+GK+SLL I+GE+
Sbjct: 3 TTTEVVMENVTAFWE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61
Query: 674 SGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQ 733
G +K G ++ +Q WI G I++NI+FG + RY +V+ AC L++D+ + D
Sbjct: 62 EGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDN 121
Query: 734 TVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793
V+GE GI LSGGQ+ RI +ARA+Y+D+D+YL D PF +D T +F+ + L+++K
Sbjct: 122 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 181
Query: 794 TVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMEL 838
T I VT ++E L AD IL++ +G G +++L N DF
Sbjct: 182 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSK 226
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 5e-28
Identities = 48/247 (19%), Positives = 106/247 (42%), Gaps = 28/247 (11%)
Query: 1242 SHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA 1301
+ ++ + ++ + VL+ I+ G+ + G TG+GK++L+ + +EP+
Sbjct: 3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1302 GQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIWEALDK 1358
G+I G R+S Q + GT++ N+ +E + +
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDE---YRYRSVIKA 106
Query: 1359 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT- 1417
CQL +++ K K + + E G S GQR + L R + K + + +LD +D T
Sbjct: 107 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166
Query: 1418 ----DNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSS 1473
++ + + + + T + + ++ + +D +L+L+ G + + L +
Sbjct: 167 KEIFESCVCKLMA----NKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 222
Query: 1474 SFSQLVA 1480
S+L+
Sbjct: 223 FSSKLMG 229
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 381 bits (981), Expect = e-111
Identities = 227/1168 (19%), Positives = 451/1168 (38%), Gaps = 120/1168 (10%)
Query: 396 QSSGEIINFMTVDAERVAD-----FSWYIHDPWLVLFEVALSILILYKNLGIASLAALFG 450
GE+ +T D ++ + + + F I+ + + L L
Sbjct: 162 HDVGELNTRLTDDVSKINEGIGDKIGMFFQ--AMATF-FGGFIIGFTRGWKLT-LVILAI 217
Query: 451 TVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSK-IINL 509
+ ++ L ++ +F DK + + + E+L +R + G + K L + NL
Sbjct: 218 SPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNL 277
Query: 510 RKRETGWLKKYVYTSAISSFVFWGAPTFVSVAT---FGTCILLNVPLESGKMLSA----- 561
+ + +KK + + F + S A +GT ++++ G++L+
Sbjct: 278 EEAKRLGIKKAITANISMGAAF--LLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVL 335
Query: 562 IATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIV 621
I F + Q I + + + F + D +P + S D +
Sbjct: 336 IGAFSVGQASPN-----IEAFANARGAAYEV---FKIIDNKPSI---DSFSKSGHKPDNI 384
Query: 622 DGN-------FSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 674
GN FS+ LK +NLKV G VA+ G G GKS+ + + +
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 675 GTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACS 720
G + + G V+Q P + + I +NI +G+E + + + A
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDE---IEKAV- 500
Query: 721 LKKDLEILSF------GDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVD 774
K+ F T++GERG LSGGQKQRI IARAL ++ I L D+ SA+D
Sbjct: 501 --KEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558
Query: 775 AHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTD 834
+ + Q L +T I + H++ + AD+I G I + G +++L+
Sbjct: 559 TES-EAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGI 617
Query: 835 FMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVS 894
+ +LV E + + + + + + + + +
Sbjct: 618 YFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRK 677
Query: 895 KGQLVQEEEREKGKVGFSVY------WKY-----ITTAFGGALVPF--ILLAQTLFQILQ 941
+E + + W Y G L P ++ ++ +
Sbjct: 678 LSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVV----- 732
Query: 942 IASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLF 1001
V+ G + + + ++++ L + S + AG L
Sbjct: 733 ------GVFTNGGPPETQ-RQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLR 785
Query: 1002 NEMHYCIFRAPMSFFD--ATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAV 1059
+ + R +S+FD +G + R + D + S + +I + I +
Sbjct: 786 YMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIII 845
Query: 1060 MSQVAWQ---VFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTT 1116
WQ + + VP + + +S + + E + T
Sbjct: 846 SLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKE---LEGSGKIATEAIENFRT 902
Query: 1117 IRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITF-AFTLVFLIS--- 1172
+ S +E +F + + R A G+ ++ + ++ F
Sbjct: 903 VVSLTREQKFETMYAQSLQIPYRNAMKKAH---VFGITFSFTQAMMYFSYAAAFRFGAYL 959
Query: 1173 IPKGFIDPA---IAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPL 1229
+ + + + A+ +G + + FA D +S I + I P +
Sbjct: 960 VTQQLMTFENVLLVFSAIVFGAMA---VGQVSSFAPDYAKATVSASHIIRI--IEKTPEI 1014
Query: 1230 AIEESRPNDSWPSHGKIDLLDLQVRYAPQMP--LVLQGISCTFPGGEKTGIVGRTGSGKS 1287
++ G + + Y P P VLQG+S G+ +VG +G GKS
Sbjct: 1015 DSYSTQGLKPNMLEGNVQFSGVVFNY-PTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKS 1073
Query: 1288 TLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL---DPL 1344
T++Q L R +P AG + +DG +I + + LR++L I+ Q+P++F+ ++ N+ D
Sbjct: 1074 TVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNS 1133
Query: 1345 EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKIL 1404
+ E+I A + + + K +++V + G S GQ+Q + + R L+++ IL
Sbjct: 1134 RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHIL 1193
Query: 1405 MLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNP 1464
+LDEAT+++DT ++ ++Q+ L + T + IAHR++++ ++DL++++ +G ++E
Sbjct: 1194 LLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTH 1253
Query: 1465 ANLLENKSSSFSQLVAEYTLRSSSSFEN 1492
LL K + +V+ S +
Sbjct: 1254 QQLLAQK-GIYFSMVSVQAGAKRSYVHH 1280
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 240 bits (615), Expect = 1e-64
Identities = 125/638 (19%), Positives = 259/638 (40%), Gaps = 52/638 (8%)
Query: 878 VENNKGQNDKADEVAVSKGQLVQEEEREK-GKVGFSVYWKYITT------AFG------- 923
+E + +AD+ G+ ++E++EK V ++Y G
Sbjct: 1 MELEEDLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIH 60
Query: 924 GALVPFILLA--------QTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALA 975
G +P ++L ++ + + ++N ++ +T +
Sbjct: 61 GVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTG--IG 118
Query: 976 VGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAA 1035
G + + A + + + + I + +FD G + R + D S
Sbjct: 119 AGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKI 178
Query: 1036 DLGIPSLVGAYAFSIIRILGTIAVMSQVAWQ---VFIVFVPAVGSCIWYQQYYISSAREL 1092
+ GI +G + ++ G + W+ V + P +G +SS
Sbjct: 179 NEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSS---F 235
Query: 1093 SRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLG 1152
+ A E ++ T+ +F + + +R ++E R A
Sbjct: 236 TDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAI---TAN 292
Query: 1153 LRLDMLSSITFA-FTLVF---LISIPKGFIDPA---IAGLAVTYG-LTLNTLLATLIWFA 1204
+ + + +A + L F + +V G ++ + FA
Sbjct: 293 ISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFA 352
Query: 1205 CDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYA--PQMPLV 1262
N + +F+ I ++P + + G ++ ++ Y ++ +
Sbjct: 353 ----NARGAAYEVFKI--IDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQ-I 405
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322
L+G++ G+ +VG +G GKST +Q + R+ +P G + IDG DI I + LR
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465
Query: 1323 LSIIPQDPVMFEGTVRSNLDP-LEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1381
+ ++ Q+PV+F T+ N+ E+ T ++I +A+ + D + K + D+ V E G
Sbjct: 466 IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGA 525
Query: 1382 NWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRI 1441
S GQ+Q + + R L++ KIL+LDEAT+++DT ++ ++Q L + T + IAHR+
Sbjct: 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRL 585
Query: 1442 TSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLV 1479
++V ++D++ + G+I E N L+ + + +LV
Sbjct: 586 STVRNADVIAGFDGGVIVEQGNHDELMR-EKGIYFKLV 622
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 270 bits (694), Expect = 2e-78
Identities = 122/568 (21%), Positives = 238/568 (41%), Gaps = 31/568 (5%)
Query: 914 YWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVA 973
+ + A ++ + +L+ + G D ++ + +V +
Sbjct: 23 FKAGLIVAGIALIL-NAASDTFMLSLLKPLLDDGF-----GKTDRSVLLW---MPLVVIG 73
Query: 974 LAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTD-- 1031
L + S ++ K + + + P++FFD +G +++R + D
Sbjct: 74 LMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSE 133
Query: 1032 --QSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQ---VFIVFVPAVGSCIWYQQYYI 1086
S++ + ++V I+G +M +WQ + +V P V +
Sbjct: 134 QVASSSSGALITVVR----EGASIIGLFIMMFYYSWQLSIILVVLAPIVS---IAIRVVS 186
Query: 1087 SSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAA 1146
R +S+ + V + + G + F + R K+ ++ + +
Sbjct: 187 KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246
Query: 1147 AMEWLGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFAC 1205
A + +++S+ AF L + + + + L L +L
Sbjct: 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNA 306
Query: 1206 DLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQG 1265
+ + + + +F I E R D + G ++ ++ Y + L+
Sbjct: 307 QFQRGMAACQTLFA---ILDSEQEKDEGKRVID--RATGDLEFRNVTFTYPGREVPALRN 361
Query: 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325
I+ P G+ +VGR+GSGKST+ + R + G IL+DG D+ L LR+++++
Sbjct: 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 421
Query: 1326 IPQDPVMFEGTVRSN--LDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1383
+ Q+ +F TV +N EE + EQI EA D + K + LD+ + ENG
Sbjct: 422 VSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 481
Query: 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITS 1443
S GQRQ + + R LL+ S IL+LDEAT+++DT ++ IQ L + + T L IAHR+++
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST 541
Query: 1444 VIDSDLVLLLNHGLIEEFDNPANLLENK 1471
+ +D ++++ G+I E + LL
Sbjct: 542 IEQADEIVVVEDGIIVERGTHSELLAQH 569
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 6e-48
Identities = 109/566 (19%), Positives = 238/566 (42%), Gaps = 53/566 (9%)
Query: 300 WKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQ 359
++V G +L + L+ + G+ D ++ + + ++ +
Sbjct: 24 KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLM-ILRGITS 82
Query: 360 RFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYI 419
+ + + ++ + ++ + + QS+G +++ +T D+E+VA
Sbjct: 83 YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASS---S 139
Query: 420 HDPWLVLFE-----VALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMK 474
+ + + L I++ Y + ++ + + ++ + + + R + + +
Sbjct: 140 SGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISK-NMQN 198
Query: 475 SKDERMKATSEILRNMRILKL---QGWEM-KFLSKIINLRKRETGWLKKYVYTSAISSFV 530
+ + + ++L+ + + + Q E +F +R + +K +S +
Sbjct: 199 TMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQ---GMKMVSASSISDPII 255
Query: 531 -FWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSL 589
+ V + + L +G + ++ L P+ +L +V + + +
Sbjct: 256 QLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAAC 315
Query: 590 QRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGN-------FSWDISSHNPTLKDINLK 642
Q + F + D + + E + +D G+ F++ P L++INLK
Sbjct: 316 QTL---FAILDSEQEKDEG------KRVIDRATGDLEFRNVTFTYP-GREVPALRNINLK 365
Query: 643 VFHGMRVAVCGTVGSGKSSLLSCIL-------GEVPKISG------TLK-LCGTKAYVAQ 688
+ G VA+ G GSGKS++ S I G + + G TL L A V+Q
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI-LMDGHDLREYTLASLRNQVALVSQ 424
Query: 689 SPWIQSGKIEDNILFGK--EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGG 746
+ + + + +NI + + E +RE+ + + G T+IGE G+ LSGG
Sbjct: 425 NVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 484
Query: 747 QKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLP 806
Q+QRI IARAL +DS I + D+ SA+D + Q L L ++T + + H++ +
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTSLVIAHRLSTIE 543
Query: 807 AADLILVMKDGKITQAGKYNDLINSG 832
AD I+V++DG I + G +++L+
Sbjct: 544 QADEIVVVEDGIIVERGTHSELLAQH 569
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 269 bits (689), Expect = 7e-78
Identities = 123/569 (21%), Positives = 235/569 (41%), Gaps = 33/569 (5%)
Query: 914 YWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVA 973
Y + + ++ + +L+ + G + + L + +
Sbjct: 23 YKAGLVVSTIALVI-NAAADTYMISLLKPLLDEGF-----GNAESNFLRI---LPFMILG 73
Query: 974 LAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTD-- 1031
L A S L+ + + P+ FFD +G +++R + D
Sbjct: 74 LMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSE 133
Query: 1032 --QSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQ---VFIVFVPAVGSCIWYQQYYI 1086
A + S+V I+G + +M +WQ V IV P V + +
Sbjct: 134 QVAGATSRALVSIVR----EGASIIGLLTLMFWNSWQLSLVLIVVAPVVA---FAISFVS 186
Query: 1087 SSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAA 1146
R++SR + V + + G + S+ + R R K+ + + T + +
Sbjct: 187 KRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVS 246
Query: 1147 AMEWLGLRLDMLSSITFAFTLVF-LISIPKGFIDP-AIAGLAVTYGLTLNTLLATLIWFA 1204
A + M++S+ L + + + P + + L L L
Sbjct: 247 AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVV-FSAMFGLMRPLKALTSVT 305
Query: 1205 CDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQ 1264
+ + + + + +F + + +G++D+ D+ Y + L
Sbjct: 306 SEFQRGMAACQTLFG---LMDLETERDNGKYEAE--RVNGEVDVKDVTFTYQGKEKPALS 360
Query: 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324
+S + P G+ +VGR+GSGKST+ R + +G I +DG D+ L +LR +
Sbjct: 361 HVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFA 420
Query: 1325 IIPQDPVMFEGTVRSN--LDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGEN 1382
++ Q+ +F T+ +N E T EQI +A + + + LD+ + ENG +
Sbjct: 421 LVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTS 480
Query: 1383 WSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRIT 1442
S GQRQ V + R LL+ + +L+LDEAT+++DT ++ IQ L + + TVL IAHR++
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLS 540
Query: 1443 SVIDSDLVLLLNHGLIEEFDNPANLLENK 1471
++ +D +L+++ G I E A+LL
Sbjct: 541 TIEQADEILVVDEGEIIERGRHADLLAQD 569
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 8e-49
Identities = 110/560 (19%), Positives = 226/560 (40%), Gaps = 41/560 (7%)
Query: 300 WKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQ 359
++V+ V+ A L+ + G + + + V L
Sbjct: 24 KAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLM-FVRGLSG 82
Query: 360 RFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWYI 419
+ L + + + ++N + + + +S+G +++ +T D+E+VA
Sbjct: 83 FASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGA---T 139
Query: 420 HDPWLVLFE-----VALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMK 474
+ + + L L+ + + ++ + + V+ ++ R ++ + +
Sbjct: 140 SRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISR-NMQT 198
Query: 475 SKDERMKATSEILRNMRILKL---QGWEM-KFLSKIINLRKRETGWLKKYVYTSAISSFV 530
+ + ++L+ +++ Q E +F ++R++ +K S +
Sbjct: 199 AMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQ---TMKLVSAQSIADPVI 255
Query: 531 -FWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSL 589
+ +V + + L G + L P+ L V S + +
Sbjct: 256 QMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAAC 315
Query: 590 QRIASFFCLDDLQPDLVE-KQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMR 648
Q + F L DL+ + K + +D+ D F++ P L ++ + G
Sbjct: 316 QTL---FGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQ-GKEKPALSHVSFSIPQGKT 371
Query: 649 VAVCGTVGSGKSSLLSCIL-------GEVPKISG------TLK-LCGTKAYVAQSPWIQS 694
VA+ G GSGKS++ + G + + G L L A V+Q+ + +
Sbjct: 372 VALVGRSGSGKSTIANLFTRFYDVDSGSI-CLDGHDVRDYKLTNLRRHFALVSQNVHLFN 430
Query: 695 GKIEDNILFGKEMN--RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752
I +NI + E RE+ + +E + G TVIGE G +LSGGQ+QR+
Sbjct: 431 DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVA 490
Query: 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLIL 812
IARAL +D+ + + D+ SA+D + Q L L +KTV+ + H++ + AD IL
Sbjct: 491 IARALLRDAPVLILDEATSALDTES-ERAIQAALDELQKNKTVLVIAHRLSTIEQADEIL 549
Query: 813 VMKDGKITQAGKYNDLINSG 832
V+ +G+I + G++ DL+
Sbjct: 550 VVDEGEIIERGRHADLLAQD 569
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 267 bits (685), Expect = 2e-77
Identities = 125/577 (21%), Positives = 231/577 (40%), Gaps = 41/577 (7%)
Query: 914 YWKYITTAFGGALVPFILLAQTLF-QILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYV 972
Y I ++ F + L +++ A + I T + +T + I
Sbjct: 12 YKYRIFATIIVGIIKFGI--PMLIPLLIKYAIDGVINNHALTTDEKVHHLTI-AIGIALF 68
Query: 973 ALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTD- 1031
+ R L K + +++ + F+ G++I+R D
Sbjct: 69 IFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDV 128
Query: 1032 ---QSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQ---VFIVFVPAVGSCIWYQQYY 1085
+ G+ ++ I I+ +++M + + + P I +
Sbjct: 129 EQTKDFILTGLMNIWL----DCITIIIALSIMFFLDVKLTLAALFIFPFY---ILTVYVF 181
Query: 1086 ISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQES----RFRDRNMKLMDEYSRPT 1141
R+L+R A V E V G + ++SF E F +N + + T
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 1142 FHIAAAMEWLGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTL---L 1197
A + + + ++ I + G I G + L L L
Sbjct: 242 RWNAYSFAAI----NTVTDIGPIIVIGVGAYLAISGSITV---GTLAAFVGYLELLFGPL 294
Query: 1198 ATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAP 1257
L+ L S++R+FQ + E G+ID+ + +Y
Sbjct: 295 RRLVASFTTLTQSFASMDRVFQ---LIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYND 351
Query: 1258 QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH 1317
+L+ I+ + GE VG +G GKSTLI + R + +GQILIDG +I
Sbjct: 352 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 411
Query: 1318 DLRSRLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDS 1374
LR+++ ++ QD ++F TV+ N+ P +TDE++ EA D + D+
Sbjct: 412 SLRNQIGLVQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDT 469
Query: 1375 KVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTV 1434
+V E G S GQ+Q + + R+ L IL+LDEAT+++D ++++IQ+ L D T
Sbjct: 470 EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTT 529
Query: 1435 LTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENK 1471
L +AHR++++ +D ++++ +G I E L+ +
Sbjct: 530 LIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ 566
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 1e-45
Identities = 123/577 (21%), Positives = 230/577 (39%), Gaps = 67/577 (11%)
Query: 300 WKDVLVTGFLTVLYTLASYVGPYL----IDTFVQYLNGRRDFENEGYV--LVSAFCVAKL 353
+ T + ++ + P L ID + D + + A + +
Sbjct: 13 KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72
Query: 354 VECLCQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVA 413
V + R + Q ++ + +YN LS++ G++I+ + D E+
Sbjct: 73 VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTK 132
Query: 414 DFSWYIHDPWLVLFEVALSILI-----LYKNLGIASLAALFGTVIVMLVNIPLGRVQENF 468
DF I + ++ ++I+I + ++ + A ++ V + GR+++
Sbjct: 133 DF---ILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLT 189
Query: 469 QDKLMKSKDERMKAT-SEILRNMRILKL---QGWEMKFLSKIINLRKRETGWLKKYVYTS 524
++ ++ E ++ + ++K + E K K N LK + +
Sbjct: 190 RE--RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKK-NTNFLTR-ALKHTRWNA 245
Query: 525 AISSFV-FWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMII 583
+ + + V G + ++ + G + + + LL P+ L + +
Sbjct: 246 YSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLT 305
Query: 584 QTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGN-------FSWDISSHNPTL 636
Q+ S+ R+ F L D D+ ++I G F ++ + P L
Sbjct: 306 QSFASMDRV---FQLIDEDYDIKNGV----GAQPIEIKQGRIDIDHVSFQYN-DNEAPIL 357
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEVPKISG------TLK-LCGT 682
KDINL + G VA G G GKS+L++ I G++ I G L
Sbjct: 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI-LIDGHNIKDFLTGSLRNQ 416
Query: 683 KAYVAQSPWIQSGKIEDNILFGK-EMNRERYNAVLDACSLKKDLEILSF------GDQTV 735
V Q + S +++NIL G+ E V++A K F G T
Sbjct: 417 IGLVQQDNILFSDTVKENILLGRPTATDEE---VVEAA---KMANAHDFIMNLPQGYDTE 470
Query: 736 IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTV 795
+GERG+ LSGGQKQR+ IAR + I + D+ SA+D + + QE L L +T
Sbjct: 471 VGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES-ESIIQEALDVLSKDRTT 529
Query: 796 IYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSG 832
+ V H++ + AD I+V+++G I + G + +LI
Sbjct: 530 LIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ 566
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 245 bits (627), Expect = 2e-69
Identities = 149/609 (24%), Positives = 259/609 (42%), Gaps = 82/609 (13%)
Query: 915 WKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWAT---PGTKDVKPVVTGSTLLIVY 971
Y+ L+ + T+ IL + S Y I + + +++
Sbjct: 29 LGYLR-PHTFTLIMVFVFV-TVSSILGVLSPYLIGKTIDVVFVPRRFDLLPR---YMLIL 83
Query: 972 VALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTD 1031
+ +S + ++ T L E+ + R P+ FFD TP G II+R D
Sbjct: 84 GTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVIND 143
Query: 1032 ----QSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQ---VFIVFVPAVGSCIWY--- 1081
+ I I+ + G + +M +V V + VP
Sbjct: 144 VDNINNVLGNSIIQFFS----GIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSS 199
Query: 1082 --QQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQE----SRFRDRNMKLMD 1135
++Y+ + R L +L G E +SG T I+ F +E +F N L
Sbjct: 200 QTRKYFYENQRVLGQLNG--------IIEEDISGLTVIKLFTREEKEMEKFDRVNESLRK 251
Query: 1136 EYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNT 1195
++ + + L ++M++++ FA F G LA+ +T+ T
Sbjct: 252 VGTKAQI-FSGVLPPL---MNMVNNLGFALISGF------G------GWLALKDIITVGT 295
Query: 1196 LLA--TLIW-----------FACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPS 1242
+ ++ + S ERIF+ + E + +
Sbjct: 296 IATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD----DPDAVELREV 351
Query: 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1302
G+I+ ++ Y + P+ L+ I+ G+K +VG TGSGK+T++ L R + G
Sbjct: 352 RGEIEFKNVWFSYDKKKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG 410
Query: 1303 QILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIWEALDKC 1359
QIL+DGIDI I LRS + I+ QD ++F TV+ NL +P +TDE+I EA
Sbjct: 411 QILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP--GATDEEIKEAAKLT 468
Query: 1360 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN 1419
++ ++ +T+NGE+ S GQRQL+ + R L KIL+LDEAT++VDT T+
Sbjct: 469 HSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEK 528
Query: 1420 LIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENK-------S 1472
IQ + + T + IAHR+ ++ ++DL+++L G I E L++ + +
Sbjct: 529 SIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFT 588
Query: 1473 SSFSQLVAE 1481
S + +V +
Sbjct: 589 SQYGLVVEK 597
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 4e-29
Identities = 115/590 (19%), Positives = 227/590 (38%), Gaps = 94/590 (15%)
Query: 300 WKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQ 359
+++ + ++ + PYLI + + R F+ ++ + + L
Sbjct: 36 TFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIY-ALTSLLF 94
Query: 360 RFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVAD----- 414
+ + L + L ++ K + G+II+ + D + + +
Sbjct: 95 WLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNS 154
Query: 415 FSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLG-RVQENFQDKLM 473
+ ++ I++ N+ ++ L L + +L+ + + ++ F
Sbjct: 155 IIQFFSG---IVTLAGAVIMMFRVNVILS-LVTLSIVPLTVLITQIVSSQTRKYFY---- 206
Query: 474 KSKDERMKATS-------EILRNMRILKLQGWEMKFLSK--IINLRKRETGWLKKYVYTS 524
E + E + + ++KL E K + K +N R+ G K +++
Sbjct: 207 ----ENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGT-KAQIFSG 261
Query: 525 AISSFV-FWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMII 583
+ + F ++ FG + L + G + + I R P+ L + +MI
Sbjct: 262 VLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQ 321
Query: 584 QTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGN-------FSWDISSHNPTL 636
S +RI F + DL+ + + L V G FS+D P L
Sbjct: 322 MALASAERI---FEILDLEEEKDDPDA-----VELREVRGEIEFKNVWFSYD--KKKPVL 371
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTK----------- 683
KDI + G +VA+ G GSGK+++++ ++ +V G + + G
Sbjct: 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD--RGQILVDGIDIRKIKRSSLRS 429
Query: 684 --AYVAQSPWIQSGKIEDNILFGKEMNRERYNA----VLDACSLKKDLEILSF------G 731
V Q + S +++N+ +G A + +A K F G
Sbjct: 430 SIGIVLQDTILFSTTVKENLKYGNP------GATDEEIKEAA---KLTHSDHFIKHLPEG 480
Query: 732 DQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS 791
+TV+ + G +LS GQ+Q + I RA + I + D+ S VD T + Q + L+
Sbjct: 481 YETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI-QAAMWKLME 539
Query: 792 SKTVIYVTHQVEFLPAADLILVMKDGKI----------TQAGKYNDLINS 831
KT I + H++ + ADLI+V++DG+I + G Y +L S
Sbjct: 540 GKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTS 589
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 228 bits (584), Expect = 4e-64
Identities = 134/590 (22%), Positives = 243/590 (41%), Gaps = 76/590 (12%)
Query: 914 YWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVV-TGSTLLIVYV 972
YW + L P ++ + + + Q IV D V+ TG +LIV
Sbjct: 21 YWIFA------VLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIV-- 72
Query: 973 ALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSF----FDATPSGRIINRA 1028
A+ + + + + A L ++ FR +SF + + +I R
Sbjct: 73 --ALIGAVGGIGCTVFASYASQNFGADLRRDL----FRKVLSFSISNVNRFHTSSLITRL 126
Query: 1029 STD----QSAADLGIPSLVGA---YAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWY 1081
+ D Q+ + + +V A + I+ + +S V I +P + +
Sbjct: 127 TNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLS---S-VLIFLIPPIVLLFVW 182
Query: 1082 -----QQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQE----SRFRDRNMK 1132
+ + V + E + G +R+F +E FR N
Sbjct: 183 LTKKGNPLFRKIQESTDEVNRVVR--------ENLLGVRVVRAFRREEYENENFRKANES 234
Query: 1133 LMDEYSRPTFHIAAAME---WLGLRLDMLSSITFAFTLVFLISIPKGFIDPAIAGLAVTY 1189
L F + + + M++ + F LV + G +I Y
Sbjct: 235 LRRSIIS-AFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIG----SIMAY-TNY 288
Query: 1190 ------GLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSH 1243
L + + I A S +R+ + + +E P E
Sbjct: 289 LMQIMFSLMMIGNILNFIVRA------SASAKRVLE---VLNEKPAIEEADNALALPNVE 339
Query: 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1303
G + +++ RY VL G++ + G ++G TGSGKSTL+ + R+++P G+
Sbjct: 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR 399
Query: 1304 ILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIWEALDKCQ 1360
+ +D +D+ + L DLR +S +PQ+ V+F GT++ NL ++TD++I EA Q
Sbjct: 400 VEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQ 457
Query: 1361 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNL 1420
+ D + DS+V G N+S GQ+Q + + R L+K+ K+L+LD+ T+SVD T+
Sbjct: 458 IHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKR 517
Query: 1421 IQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLEN 1470
I L+++ CT I +I + + +D +L+L+ G + F LLE+
Sbjct: 518 ILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 1e-37
Identities = 72/278 (25%), Positives = 127/278 (45%), Gaps = 36/278 (12%)
Query: 578 VISMIIQTKVSLQRIASFFCLDDLQPDLVE-KQPSGSSETALDIV--DGNFSWDISSHNP 634
+++ I++ S +R+ + +P + E + + F + + +P
Sbjct: 302 ILNFIVRASASAKRVLEVL---NEKPAIEEADNALALPNVEGSVSFENVEFRYF-ENTDP 357
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEVPKISG------TLK-LC 680
L +N V G VAV G GSGKS+L++ I G V ++ LK L
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV-EVDELDVRTVKLKDLR 416
Query: 681 GTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNA----VLDACSLKKDLE-ILSFGDQ-- 733
G + V Q + SG I++N+ +G+E +A +++A + + + I+S +
Sbjct: 417 GHISAVPQETVLFSGTIKENLKWGRE------DATDDEIVEAAKIAQIHDFIISLPEGYD 470
Query: 734 TVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793
+ + G N SGGQKQR+ IARAL + + + DD S+VD T + + L
Sbjct: 471 SRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI-LDGLKRYTKGC 529
Query: 794 TVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINS 831
T +T ++ AD ILV+ +GK+ G + +L+
Sbjct: 530 TTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 3e-59
Identities = 77/266 (28%), Positives = 140/266 (52%), Gaps = 13/266 (4%)
Query: 1211 IISVERIFQYTCIPSEPPLAIEESRPN--DSWPSHGKIDLLDLQVRYAPQMPLVLQGISC 1268
I +E +F +E +++ P G+I+ ++ YA LQ +S
Sbjct: 22 FIDMENMFDLLKEETE----VKD-LPGAGPLRFQKGRIEFENVHFSYADGRE-TLQDVSF 75
Query: 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQ 1328
T G+ +VG +G+GKST+++ LFR + ++G I IDG DIS + LRS + ++PQ
Sbjct: 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQ 135
Query: 1329 DPVMFEGTVRSNL---DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSM 1385
D V+F T+ N+ + ++++ A + D + ++V E G S
Sbjct: 136 DTVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSG 193
Query: 1386 GQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVI 1445
G++Q V + R +LK I++LDEAT+++DT+ + IQ +L + ++ T + +AHR+++V+
Sbjct: 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVV 253
Query: 1446 DSDLVLLLNHGLIEEFDNPANLLENK 1471
++D +L++ G I E LL
Sbjct: 254 NADQILVIKDGCIVERGRHEALLSRG 279
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 1e-35
Identities = 74/290 (25%), Positives = 128/290 (44%), Gaps = 39/290 (13%)
Query: 568 LQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGN--- 624
++ ++ + ++ + F L + ++ + L G
Sbjct: 4 SHHHHHHSSGLVPRGSHMFIDMENM---FDLLKEETEVKDL----PGAGPLRFQKGRIEF 56
Query: 625 ----FSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEVPKI 673
FS+ TL+D++ V G +A+ G G+GKS++L + G + +I
Sbjct: 57 ENVHFSYA--DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI-RI 113
Query: 674 SG------TLK-LCGTKAYVAQSPWIQSGKIEDNILFGK-EMNRERYNAVLDACSLKKDL 725
G T L V Q + + I DNI +G+ + V A
Sbjct: 114 DGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGND---EVEAAAQAAGIH 170
Query: 726 E-ILSF--GDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLF 782
+ I++F G +T +GERG+ LSGG+KQR+ IAR + + I L D+ SA+D
Sbjct: 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSN-ERAI 229
Query: 783 QEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSG 832
Q L + +++T I V H++ + AD ILV+KDG I + G++ L++ G
Sbjct: 230 QASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRG 279
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 201 bits (515), Expect = 1e-58
Identities = 77/240 (32%), Positives = 132/240 (55%), Gaps = 5/240 (2%)
Query: 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1302
H I +++ RY P P++L I+ + GE GIVGR+GSGKSTL + + R P G
Sbjct: 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1303 QILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIWEALDKC 1359
Q+LIDG D++L + LR ++ ++ QD V+ ++ N+ +P + E++ A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLA 122
Query: 1360 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN 1419
D + + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D +++
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 1420 LIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLV 1479
+I + + + TV+ IAHR+++V ++D ++++ G I E LL S +S L
Sbjct: 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 4e-34
Identities = 71/219 (32%), Positives = 107/219 (48%), Gaps = 23/219 (10%)
Query: 630 SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEVPKISGT-LKLCG 681
L +INL + G + + G GSGKS+L I G+V I G L L
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV-LIDGHDLALAD 77
Query: 682 TK------AYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLE-ILSF--G 731
V Q + + I DNI M+ E+ V+ A L + I G
Sbjct: 78 PNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK---VIYAAKLAGAHDFISELREG 134
Query: 732 DQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS 791
T++GE+G LSGGQ+QRI IARAL + I +FD+ SA+D + H+ + +
Sbjct: 135 YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES-EHVIMRNMHKICK 193
Query: 792 SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLIN 830
+TVI + H++ + AD I+VM+ GKI + GK+ +L++
Sbjct: 194 GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 198 bits (507), Expect = 9e-58
Identities = 74/228 (32%), Positives = 115/228 (50%), Gaps = 3/228 (1%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
+ + Y +L+ IS G +G GKST+ L R +P AG+I
Sbjct: 2 LSARHVDFAYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD--PLEESTDEQIWEALDKCQLGD 1363
IDG I I L + RS++ + QD + GT+R NL + TDE +W+ LD
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1364 EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQ 1423
V +L+++V E G S GQRQ + + R L+ KILMLDEATAS+D+ +++++Q+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 1424 TLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENK 1471
L T L IAHR+++++D+D + + G I L+
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 5e-35
Identities = 64/238 (26%), Positives = 120/238 (50%), Gaps = 20/238 (8%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEVPKISG- 675
+F++D L+DI+ + +A G G GKS++ S + GE+ I G
Sbjct: 8 DFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI-TIDGQ 64
Query: 676 -----TLK-LCGTKAYVAQSPWIQSGKIEDNILFGKEMN--RERYNAVLDACSLKKDLEI 727
+L+ +V+Q I +G I +N+ +G E + E VLD + +E
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 728 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL 787
+ T +GERG+ +SGGQ+QR+ IARA ++ I + D+ +++D+ + + Q+ L
Sbjct: 125 MPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES-ESMVQKALD 183
Query: 788 GLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQA 845
L+ +T + + H++ + AD I ++ G+IT +GK+N+L+ + + + V
Sbjct: 184 SLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQLTV 241
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 2e-54
Identities = 71/213 (33%), Positives = 121/213 (56%), Gaps = 6/213 (2%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L+ I+ P G +VG TGSGKST+ + L+R + G I I G +++ + +RS
Sbjct: 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRS 93
Query: 1322 RLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1378
+ I+PQD ++F T++ N+ ++TDE++ +A QL D + K D+ V
Sbjct: 94 IIGIVPQDTILFNETIKYNILYGKL--DATDEEVIKATKSAQLYDFIEALPKKWDTIVGN 151
Query: 1379 NGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIA 1438
G S G+RQ + + R LLK KI++ DEAT+S+D+ T+ L Q+ + + T++ IA
Sbjct: 152 KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIA 211
Query: 1439 HRITSVIDSDLVLLLNHGLIEEFDNPANLLENK 1471
HR++++ ++ ++LLN G I E +LL+
Sbjct: 212 HRLSTISSAESIILLNKGKIVEKGTHKDLLKLN 244
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 4e-34
Identities = 70/249 (28%), Positives = 122/249 (48%), Gaps = 35/249 (14%)
Query: 611 SGSSETALDIVDGN-------FSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLL 663
S S + N FS+ +++ TLK IN + G A+ G GSGKS++
Sbjct: 4 SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA 63
Query: 664 SCIL------GEVPKISG------TLK-LCGTKAYVAQSPWIQSGKIEDNILFGKEMNRE 710
+ G++ KI G + V Q + + I+ NIL+GK
Sbjct: 64 KLLYRFYDAEGDI-KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL---- 118
Query: 711 RYNA----VLDACSLKKDLE-ILSF--GDQTVIGERGINLSGGQKQRIQIARALYQDSDI 763
+A V+ A + + I + T++G +G+ LSGG++QRI IAR L +D I
Sbjct: 119 --DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKI 176
Query: 764 YLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAG 823
+FD+ S++D+ T +LFQ+ + L ++T+I + H++ + +A+ I+++ GKI + G
Sbjct: 177 VIFDEATSSLDSKT-EYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKG 235
Query: 824 KYNDLINSG 832
+ DL+
Sbjct: 236 THKDLLKLN 244
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 1e-47
Identities = 70/256 (27%), Positives = 124/256 (48%), Gaps = 8/256 (3%)
Query: 1243 HGKIDLLDLQVRYAPQMP--LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA 1300
G + D+ Y P P VLQG++ T G+ T +VG GSGKST+ L + +P
Sbjct: 14 KGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1301 AGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD--PLEESTDEQIWEALDK 1358
G++L+DG + H L ++++ + Q+P++F + R N+ T E+I +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1359 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD 1418
D + D++V E G S GQRQ V L R L+++ ++L+LD AT+++D
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 1419 NLIQQTLRQ--HFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFS 1476
+Q+ L + ++ TVL I +++ + +L L G + E L+E +
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-GCYR 251
Query: 1477 QLVAEYTLRSSSSFEN 1492
+V S ++ +
Sbjct: 252 SMVEALAAPSDAAAHH 267
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-33
Identities = 58/231 (25%), Positives = 97/231 (41%), Gaps = 22/231 (9%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---------- 683
L+ + ++ G A+ G GSGKS++ + + G + L G
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH 92
Query: 684 ---AYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLE-ILSF--GDQTVIG 737
A V Q P + +NI +G + + I F G T +G
Sbjct: 93 TQVAAVGQEPLLFGRSFRENIAYGLTRTPTM-EEITAVAMESGAHDFISGFPQGYDTEVG 151
Query: 738 ERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGS-HLFQEVL--LGLLSSKT 794
E G LSGGQ+Q + +ARAL + + + D+ SA+DA + Q +L +S+T
Sbjct: 152 ETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG--NQLRVQRLLYESPEWASRT 209
Query: 795 VIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQA 845
V+ +T Q+ A IL +K+G + + G + L+ G + +V A
Sbjct: 210 VLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVEALAAP 260
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 4e-32
Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 44/253 (17%)
Query: 610 PSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE 669
S + + LK I+ ++ G + + G G+GK++LL+ +
Sbjct: 14 VPRGSHMLIQLDQIGRMKQ---GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY 70
Query: 670 VPKISGTLKLCGTK---------------AYVAQS---PWIQSGKIEDNILFGKEMNRER 711
P SGT+ L G +V+ S + + ++ D ++ G +
Sbjct: 71 EPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGV 130
Query: 712 YNAVLD-----ACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLF 766
Y + D A L K + + + Q IG LS G+KQR+ IARAL + +
Sbjct: 131 YQDIDDEIRNEAHQLLKLVGMSAKAQQY-IGY----LSTGEKQRVMIARALMGQPQVLIL 185
Query: 767 DDPFSAVDAHTGSHLFQEVLLGLLS-------SKTVIYVTHQVEFLPAA-DLILVMKDGK 818
D+P + +D +E LL +L + +IYVTH +E + A IL++KDG+
Sbjct: 186 DEPAAGLDFIA-----RESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQ 240
Query: 819 ITQAGKYNDLINS 831
Q G D++ S
Sbjct: 241 SIQQGAVEDILTS 253
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 50/254 (19%), Positives = 95/254 (37%), Gaps = 35/254 (13%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
I L + + +L+ IS G+K + G G+GK+TL+ L +G +
Sbjct: 22 IQLDQIGRMKQGK--TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 1306 IDGIDISLIG--LHDLRSRLSIIPQD---PVMFEGTVR--------SNLDPLEESTDEQI 1352
+ G +G +R + + V ++ ++ DE
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR 139
Query: 1353 WEA---LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEA 1409
EA L + + ++ G L S G++Q V + R L+ + ++L+LDE
Sbjct: 140 NEAHQLLKLVGMSAKAQQYIGYL-----------STGEKQRVMIARALMGQPQVLILDEP 188
Query: 1410 TASVDTATDNLIQQTLR---QHFSDCTVLTIAHRITSVIDS-DLVLLLNHGLIEEFDNPA 1465
A +D + L + ++ + H I + + +LLL G +
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248
Query: 1466 NLL--ENKSSSFSQ 1477
++L EN S F +
Sbjct: 249 DILTSENMSRFFQK 262
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 5e-30
Identities = 58/224 (25%), Positives = 93/224 (41%), Gaps = 33/224 (14%)
Query: 615 ETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 674
AL + + F + + N + +N + G +AV G G GKS+LL +LG I
Sbjct: 2 NKALSVENLGFYYQ--AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 675 GTLKLCGTKAYVAQSPWIQSG-KIEDNILFG--------KEMNRERYNAVLDACSLKKDL 725
G +++ + +V Q + D +L G + Y + A L L
Sbjct: 60 GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQA--LDY-L 116
Query: 726 EILSFGDQTVIGERGIN-LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQE 784
+ R LSGGQ+Q I IARA+ + + L D+P SA+D Q+
Sbjct: 117 NLTHLAK------REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLAN-----QD 165
Query: 785 VLLGLLSS------KTVIYVTHQVEFLPA-ADLILVMKDGKITQ 821
++L LL TV++ THQ + A A+ L++
Sbjct: 166 IVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF 209
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 2e-22
Identities = 50/242 (20%), Positives = 92/242 (38%), Gaps = 45/242 (18%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
+ + +L Y + + Q ++ G+ ++G+ G GKSTL+ L I P G+I
Sbjct: 5 LSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVM-FEGTVR-----------SNLDPLEESTDEQIW 1353
+ + +PQ F +V + + +
Sbjct: 64 VYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110
Query: 1354 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASV 1413
+ALD L +++ L S GQRQL+ + R + K+++LDE T+++
Sbjct: 111 QALDYLNLTHLAKREFTSL-----------SGGQRQLILIARAIASECKLILLDEPTSAL 159
Query: 1414 DTATDNLIQQTLRQ--HFSDCTVLTIAHRITSVID-SDLVLLLNHGLI-----EEFDNPA 1465
D A +++ L + TV+ H+ V+ ++ LLLN
Sbjct: 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILTSE 219
Query: 1466 NL 1467
NL
Sbjct: 220 NL 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-29
Identities = 60/257 (23%), Positives = 105/257 (40%), Gaps = 31/257 (12%)
Query: 1245 KIDLLDLQVRYAPQMPL---VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA 1301
+I+++++ + PL L+ +S GE + G TGSGKSTL+Q + ++EP +
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 1302 GQILIDGIDISLIGLHDLRSRLSIIPQDPV--MFEGTVR-------SNLDPLEESTDEQI 1352
G +L DG +++R + I Q P F V N P + +
Sbjct: 62 GDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRD-PVPLV 117
Query: 1353 WEALDKCQL-GDEVRKKE-GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEAT 1410
+A++ L D + + L S G+++ V + V++ IL+LDE
Sbjct: 118 KKAMEFVGLDFDSFKDRVPFFL-----------SGGEKRRVAIASVIVHEPDILILDEPL 166
Query: 1411 ASVDTATDNLIQQTLRQ-HFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468
+D + + + + TV+ I+H I +VI+ D V++L G L
Sbjct: 167 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226
Query: 1469 ENKSSSFSQLVAEYTLR 1485
E F R
Sbjct: 227 EKYDPRFFTSKMLVMRR 243
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 7e-21
Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 32/213 (15%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA-------- 684
L++++L + G + V G GSGKS+LL + G + SG + G +
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRN 79
Query: 685 --YVAQSPWIQ--SGKIEDNILFG-------KEMNRERYNAVLDACSLKKDLEILSFGDQ 733
Q P Q + ++ D + F ++ ++ L D SF D+
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDP-VPLVKKAMEFVGLDFD----SFKDR 134
Query: 734 TVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS- 792
LSGG+K+R+ IA + + DI + D+P +D G ++ +
Sbjct: 135 VP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE-GKTDLLRIVEKWKTLG 188
Query: 793 KTVIYVTHQVEFLPA-ADLILVMKDGKITQAGK 824
KTVI ++H +E + D ++V++ GK G
Sbjct: 189 KTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 3e-28
Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 36/217 (16%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KA 684
+L++INL+V +G +V + G GSGK++LL I G +P SG + + G
Sbjct: 18 RFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPY-SGNIFINGMEVRKIRNYIR 75
Query: 685 YVAQSPWIQSG--KIEDNILFG---KEMNRERYNAVLDACSLKKDLEILSFGDQTVIGER 739
Y P + D + K ++R+ + +L A L +++ R
Sbjct: 76 YSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEIL-----------RR 124
Query: 740 GIN-LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS--KTVI 796
+ LS GQ ++ + AL +I D+PF VDA + V+ + K I
Sbjct: 125 KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR-----RHVISRYIKEYGKEGI 179
Query: 797 YVTH-QVEFLPAADLILVM-KDGKITQAGKYNDLINS 831
VTH + ++ ++L+ S
Sbjct: 180 LVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 9e-21
Identities = 50/236 (21%), Positives = 99/236 (41%), Gaps = 32/236 (13%)
Query: 1246 IDLLDLQVRY--APQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1303
I L ++ + L+ I+ G EK I+G GSGK+TL++ + ++ P +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNG-EKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1304 ILIDGIDISLIGLHDLRSRLSIIPQDP--VMFEGTVRSN----LDPLEESTDEQIWEALD 1357
I I+G+++ +R+ + P TV + + E L
Sbjct: 60 IFINGMEVR-----KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLD-RDLFLEMLK 113
Query: 1358 KCQLGDEVRKKE-GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA 1416
+LG+E+ +++ KL S GQ LV L + +I+ LDE +VD A
Sbjct: 114 ALKLGEEILRRKLYKL-----------SAGQSVLVRTSLALASQPEIVGLDEPFENVDAA 162
Query: 1417 TDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHG-LIEEFDNPANLLEN 1470
++I + ++++ + + H + + + G ++ + + LLE+
Sbjct: 163 RRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 3e-27
Identities = 66/245 (26%), Positives = 108/245 (44%), Gaps = 28/245 (11%)
Query: 1242 SHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA 1301
+ + +L Y+ L+GI+ GE T I+G G GKSTL Q I++P++
Sbjct: 4 EDYILKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSS 62
Query: 1302 GQILIDGIDISL--IGLHDLRSRLSIIPQDPV--MFEGTVRS-------NLDPLEESTDE 1350
G+IL D I G+ LR + I+ QDP +F +V N+ E+ +
Sbjct: 63 GRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRK 122
Query: 1351 QIWEALDKCQLGDEVRKKE-GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEA 1409
++ AL + + + ++ K L S GQ++ V + VL+ K+L+LDE
Sbjct: 123 RVDNALKRTGI-EHLKDKPTHCL-----------SFGQKKRVAIAGVLVMEPKVLILDEP 170
Query: 1410 TASVDTATDNLIQQTLR--QHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPAN 1466
TA +D + I + L Q T++ H I V D V ++ G + NP
Sbjct: 171 TAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 230
Query: 1467 LLENK 1471
+ K
Sbjct: 231 VFAEK 235
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 7e-21
Identities = 53/219 (24%), Positives = 86/219 (39%), Gaps = 41/219 (18%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA--------- 684
LK IN+ + G A+ G G GKS+L G + SG +
Sbjct: 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMK 81
Query: 685 ------YVAQSPWIQ--SGKIEDNILFG--------KEMNRERYNAVLDACSLKKDLEIL 728
V Q P Q S + ++ FG E+ R+R + L I
Sbjct: 82 LRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEI-RKRVDNALKR------TGIE 134
Query: 729 SFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLG 788
D+ LS GQK+R+ IA L + + + D+P + +D G ++L+
Sbjct: 135 HLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPM-GVSEIMKLLVE 188
Query: 789 LLSS--KTVIYVTHQVEFLPA-ADLILVMKDGKITQAGK 824
+ T+I TH ++ +P D + VMK+G++ G
Sbjct: 189 MQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 5e-23
Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 24/204 (11%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 691
+ L+ ++ G + + G G GK++ + + G G ++ T AY Q
Sbjct: 368 GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQY-- 425
Query: 692 IQSGKIEDNI--LFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 749
+ E + L +++ + N+ L K L I+ D+ V +LSGG+ Q
Sbjct: 426 -IKAEYEGTVYELLS-KIDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQ 478
Query: 750 RIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL------SSKTVIYVTHQVE 803
R+ IA L +D+DIYL D+P + +D + + + + KT + V H V
Sbjct: 479 RVAIAATLLRDADIYLLDEPSAYLDVEQ-----RLAVSRAIRHLMEKNEKTALVVEHDVL 533
Query: 804 FLPA-ADLILVMKDGKITQAGKYN 826
+ +D ++V +G+ + G+
Sbjct: 534 MIDYVSDRLIVF-EGEPGRHGRAL 556
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 2e-18
Identities = 46/217 (21%), Positives = 82/217 (37%), Gaps = 52/217 (23%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP------KISGTLKLCGTKA----- 684
+ V GM V + G G+GK++ + + G++ S + +
Sbjct: 107 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQN 166
Query: 685 -----------------YVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEI 727
YV P GK+ + L K ++ V+ K+LE+
Sbjct: 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE--LLKKVDEVGKFEEVV------KELEL 218
Query: 728 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL 787
+ D+ + LSGG+ QR+ IA AL + + Y FD+P S +D + +
Sbjct: 219 ENVLDREL-----HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ-----RLKVA 268
Query: 788 GLLSS-----KTVIYVTHQVEFLPA-ADLILVMKDGK 818
++ K V+ V H + L +D+I V+
Sbjct: 269 RVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEP 305
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 5e-17
Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 38/188 (20%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L+ GE GIVG G GK+T ++ L + EP G++ D
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL------------- 417
Query: 1322 RLSIIPQDP---VMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKK---EGKLDSK 1375
++ + +EGTV L + L+ E+ K D
Sbjct: 418 --TVAYKPQYIKAEYEGTVYELL-------SKIDSSKLNSNFYKTELLKPLGIIDLYDRN 468
Query: 1376 VTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD----TATDNLIQQTLRQHFSD 1431
V + S G+ Q V + LL+ + I +LDE +A +D A I+ + ++ +
Sbjct: 469 VED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN--E 522
Query: 1432 CTVLTIAH 1439
T L + H
Sbjct: 523 KTALVVEH 530
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 3e-15
Identities = 42/218 (19%), Positives = 89/218 (40%), Gaps = 37/218 (16%)
Query: 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP------AAGQILIDGIDISLIGLHDL 1319
G GIVG G+GK+T ++ L + P + +I + + +
Sbjct: 110 RLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFE 169
Query: 1320 RSR---LSIIPQ------DPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEG 1370
R + + + + P +G VR L ++E + E + + +L E
Sbjct: 170 RLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE--VGKFEEVVKELEL-------EN 220
Query: 1371 KLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ-HF 1429
LD ++ + S G+ Q V + LL+++ DE ++ +D + + +R+
Sbjct: 221 VLDRELHQ----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276
Query: 1430 SDCTVLTIAHRITSVID--SDLVLLL-----NHGLIEE 1460
VL + H + +V+D SD++ ++ +G+ +
Sbjct: 277 EGKAVLVVEHDL-AVLDYLSDVIHVVYGEPGVYGIFSK 313
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 1e-22
Identities = 41/208 (19%), Positives = 93/208 (44%), Gaps = 34/208 (16%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
VL+ I+ T G G G GK+TL++T+ ++P G+I+ +G+ I+ ++
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKG 78
Query: 1322 RLSIIPQDPVMFEG-TVRSNLD--------PLEESTDEQIWEALDKCQLGDEVRKKEGKL 1372
++ +P++ ++ +V L + + +I +AL+ ++ D ++KK G+L
Sbjct: 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK---NEIMDALESVEVLD-LKKKLGEL 134
Query: 1373 DSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSD- 1431
S G + V L LL ++I +LD+ ++D + + + +++ + +
Sbjct: 135 -----------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK 183
Query: 1432 -CTVLTIAHRITSVIDSDLVLLLNHGLI 1458
++ + S D L+
Sbjct: 184 GIVII-SSREELSYCDV--NENLHKYST 208
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 2e-17
Identities = 45/206 (21%), Positives = 80/206 (38%), Gaps = 34/206 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---TKA-----YVA 687
L+ I + + G V G G GK++LL I + + G + G TK ++
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84
Query: 688 QSPWIQSG-KIEDNILF-----GKEMNRERYNAVLDACSL---KKDLEILSFGDQTVIGE 738
+ + +ED + G ++N+ L++ + KK L
Sbjct: 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLG------------ 132
Query: 739 RGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYV 798
LS G +R+Q+A L +++IY+ DDP A+D + + + +L L VI
Sbjct: 133 ---ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 189
Query: 799 THQVEFLPAADLILVMKDGKITQAGK 824
+ E L D+ + K
Sbjct: 190 SR--EELSYCDVNENLHKYSTKIDKK 213
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 6e-22
Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 24/204 (11%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 692
+ L+ ++ G + + G G GK++ + + G G ++ T AY + +I
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAY--KPQYI 356
Query: 693 QSGKIEDNI--LFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750
E + L +++ + N+ L K L I+ D+ V LSGG+ QR
Sbjct: 357 -KADYEGTVYELLS-KIDASKLNSNFYKTELLKPLGIIDLYDREVN-----ELSGGELQR 409
Query: 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL------SSKTVIYVTHQVEF 804
+ IA L +D+DIYL D+P + +D + + + + KT + V H V
Sbjct: 410 VAIAATLLRDADIYLLDEPSAYLDVEQ-----RLAVSRAIRHLMEKNEKTALVVEHDVLM 464
Query: 805 LPA-ADLILVMKDGKITQAGKYND 827
+ +D ++V +G+ + G+
Sbjct: 465 IDYVSDRLMVF-EGEPGKYGRALP 487
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 1e-16
Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 52/225 (23%)
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP------KISGTLKLCGTKA 684
N + V GM V + G G+GKS+ + + G++ S + +
Sbjct: 32 GVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRG 91
Query: 685 ----------------------YVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLK 722
YV P GK+ + + K + V+
Sbjct: 92 NELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--KKADETGKLEEVVK----- 144
Query: 723 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLF 782
LE+ + ++ + +LSGG+ QR+ IA AL +++ Y FD+P S +D
Sbjct: 145 -ALELENVLEREIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ----- 193
Query: 783 QEVLLGLLSS-----KTVIYVTHQVEFLPA-ADLILVMKDGKITQ 821
+ + K+V+ V H + L +D+I V+
Sbjct: 194 RLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVY 238
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 2e-16
Identities = 45/188 (23%), Positives = 72/188 (38%), Gaps = 38/188 (20%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L+ GE GIVG G GK+T ++ L + EP G+I D
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL------------- 347
Query: 1322 RLSIIPQDP---VMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKK---EGKLDSK 1375
++ + +EGTV L + L+ E+ K D +
Sbjct: 348 --TVAYKPQYIKADYEGTVYELL-------SKIDASKLNSNFYKTELLKPLGIIDLYDRE 398
Query: 1376 VTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD----TATDNLIQQTLRQHFSD 1431
V E S G+ Q V + LL+ + I +LDE +A +D A I+ + ++ +
Sbjct: 399 VNE----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN--E 452
Query: 1432 CTVLTIAH 1439
T L + H
Sbjct: 453 KTALVVEH 460
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 4e-15
Identities = 40/216 (18%), Positives = 82/216 (37%), Gaps = 36/216 (16%)
Query: 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP------AAGQILIDGIDISLIGLHD 1318
G GIVG G+GKST ++ L + P + +I + + +
Sbjct: 39 YRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98
Query: 1319 LRSR---LSIIPQ------DPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKE 1369
+ + + + + P +G V L +E ++ E + +L E
Sbjct: 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE--TGKLEEVVKALEL-------E 149
Query: 1370 GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD-TATDNLIQ--QTLR 1426
L+ ++ S G+ Q V + LL+ + DE ++ +D N + + L
Sbjct: 150 NVLEREIQH----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS 205
Query: 1427 QHFSDCTVLTIAHRITSVID--SDLVLLLNHGLIEE 1460
+ +VL + H + +V+D SD++ ++
Sbjct: 206 EE--GKSVLVVEHDL-AVLDYLSDIIHVVYGEPGVY 238
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 6e-22
Identities = 43/203 (21%), Positives = 73/203 (35%), Gaps = 37/203 (18%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 692
+ L + + + G G+GK++L+ + G + G + Q
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAP 424
Query: 693 Q---------SGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINL 743
+ KI L N + V+ K L I DQ V +L
Sbjct: 425 KFPGTVRQLFFKKIRGQFL-----NPQFQTDVV------KPLRIDDIIDQEVQ-----HL 468
Query: 744 SGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL------SSKTVIY 797
SGG+ QR+ I AL +DIYL D+P + +D+ + + ++ + KT
Sbjct: 469 SGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ-----RIICSKVIRRFILHNKKTAFI 523
Query: 798 VTHQVEFLPA-ADLILVMKDGKI 819
V H AD ++V +
Sbjct: 524 VEHDFIMATYLADKVIVFEGIPS 546
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 5e-20
Identities = 42/255 (16%), Positives = 87/255 (34%), Gaps = 35/255 (13%)
Query: 1226 EPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSG 1285
L + + + Q VL F E ++G G+G
Sbjct: 331 TEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTG 390
Query: 1286 KSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPV--MFEGTVRSNLDP 1343
K+TLI+ L ++P GQ + ++S+ +++ V +F +R
Sbjct: 391 KTTLIKLLAGALKPDEGQDIPKL-NVSM-----KPQKIAPKFPGTVRQLFFKKIRG---- 440
Query: 1344 LEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKI 1403
+ + + + ++ + +D +V S G+ Q V + L + I
Sbjct: 441 -QFLNPQFQTDVVKPLRI-------DDIIDQEVQH----LSGGELQRVAIVLALGIPADI 488
Query: 1404 LMLDEATASVD----TATDNLIQQTLRQHFSDCTVLTIAHRITSVID--SDLVLLLN--H 1455
++DE +A +D +I++ H + T + H + +D V++
Sbjct: 489 YLIDEPSAYLDSEQRIICSKVIRR-FILH-NKKTAFIVEHDF-IMATYLADKVIVFEGIP 545
Query: 1456 GLIEEFDNPANLLEN 1470
P +LL
Sbjct: 546 SKNAHARAPESLLTG 560
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 6e-20
Identities = 53/266 (19%), Positives = 92/266 (34%), Gaps = 59/266 (22%)
Query: 615 ETALDIVD--GNFSWDIS---SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE 669
A+ I++ N ++ S N G + + GT G GKS+ L + G+
Sbjct: 67 FDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGK 126
Query: 670 VPKISGTLKLCGTK------------------------------AYVAQSPWIQSGKIE- 698
G YV P G ++
Sbjct: 127 QKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQK 186
Query: 699 --DNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGI-NLSGGQKQRIQIAR 755
+ + E + E + L+ + +R I LSGG+ QR I
Sbjct: 187 VGELLKLRMEKSPEDVKRYIKILQLEN------------VLKRDIEKLSGGELQRFAIGM 234
Query: 756 ALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS-KTVIYVTHQVEFLPA-ADLILV 813
+ Q++D+Y+FD+P S +D + +++ LL+ K VI V H + L +D + +
Sbjct: 235 SCVQEADVYMFDEPSSYLDVKQRLNAA-QIIRSLLAPTKYVICVEHDLSVLDYLSDFVCI 293
Query: 814 MKD-----GKITQAGKYNDLINSGTD 834
+ G +T + IN D
Sbjct: 294 IYGVPSVYGVVTLPASVREGINIFLD 319
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 2e-14
Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 35/211 (16%)
Query: 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGID---ISLIGLHDLRSRLSIIPQD 1329
G+ G+VG G GKST ++ L +P G+ I +L++ + + +D
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLED 162
Query: 1330 PVM--------------FEGTVRSNLDPLEESTDE---QIWEALDKCQLGDEVRKKEGKL 1372
+ +G V+ + L+ ++ + + QL E L
Sbjct: 163 DIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQL-------ENVL 215
Query: 1373 DSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ-HFSD 1431
+ + S G+ Q +G ++ + + M DE ++ +D Q +R
Sbjct: 216 KRDIEK----LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT 271
Query: 1432 CTVLTIAHRITSVID--SDLVLLLNHGLIEE 1460
V+ + H + SV+D SD V ++
Sbjct: 272 KYVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-21
Identities = 38/209 (18%), Positives = 77/209 (36%), Gaps = 30/209 (14%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA-----YV 686
+ L N + G + + G G GK++ ++GE+ G++ +
Sbjct: 280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRI 339
Query: 687 AQSPWIQSGK-IEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSG 745
+ + +E+ + + V K L + + V +LSG
Sbjct: 340 FPNYDGTVQQYLENASKDALSTSSWFFEEVT------KRLNLHRLLESNVN-----DLSG 388
Query: 746 GQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS------KTVIYVT 799
G+ Q++ IA L +++D+Y+ D P S +D + ++ + +
Sbjct: 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEE-----RYIVAKAIKRVTRERKAVTFIID 443
Query: 800 HQVEFLPA-ADLILVMKDGKITQAGKYND 827
H + AD I+V K G+ +AG
Sbjct: 444 HDLSIHDYIADRIIVFK-GEPEKAGLATS 471
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 2e-20
Identities = 42/214 (19%), Positives = 74/214 (34%), Gaps = 38/214 (17%)
Query: 636 LKDINLKVFH-GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----------- 683
K L + V G G GK+++L + GE+ G K
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 684 -AYVAQSPW---------IQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGD 732
+ + IQ + L G + + +K+ L + + +
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWN 133
Query: 733 QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS 792
+ LSGG QR+ +A +L +++D+Y+FD P S +D + + +
Sbjct: 134 KDAN-----ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRE-----RMNMAKAIRE 183
Query: 793 ----KTVIYVTHQVEFL-PAADLILVMKDGKITQ 821
K VI V H + L DLI ++
Sbjct: 184 LLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVY 217
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 5e-19
Identities = 41/209 (19%), Positives = 80/209 (38%), Gaps = 35/209 (16%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L + GE GI+G G GK+T + L + G + + +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQIL---------- 332
Query: 1322 RLSIIPQ-DPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKK---EGKLDSKVT 1377
S PQ ++GTV+ LE ++ + + +EV K+ L+S V
Sbjct: 333 --SYKPQRIFPNYDGTVQ---QYLENASKDALS---TSSWFFEEVTKRLNLHRLLESNVN 384
Query: 1378 ENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD----TATDNLIQQTLRQHFSDCT 1433
+ S G+ Q + + L K + + +LD+ ++ +D I++ R+
Sbjct: 385 D----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER--KAV 438
Query: 1434 VLTIAHRITSVID--SDLVLLLNHGLIEE 1460
I H + S+ D +D +++ +
Sbjct: 439 TFIIDHDL-SIHDYIADRIIVFKGEPEKA 466
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 2e-13
Identities = 31/209 (14%), Positives = 73/209 (34%), Gaps = 37/209 (17%)
Query: 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR-SRLSIIPQDPV 1331
G++G+ G GK+T+++ L + P G + L R + ++
Sbjct: 25 NTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRGKEIYNYFKELY 82
Query: 1332 ------------------MFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLD 1373
+GTV L ++E + E + + +
Sbjct: 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKIDER--GKKDEVKELLNM-------TNLWN 133
Query: 1374 SKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCT 1433
S G Q + + LL+ + + + D+ ++ +D + + +R+ +
Sbjct: 134 KDANI----LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKY 189
Query: 1434 VLTIAHRITSVID--SDLVLLLNHGLIEE 1460
V+ + H + V+D +DL+ ++
Sbjct: 190 VIVVDHDL-IVLDYLTDLIHIIYGESSVY 217
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 9e-21
Identities = 46/231 (19%), Positives = 75/231 (32%), Gaps = 48/231 (20%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L +S GE +VG G+GKSTL+ + + G I G + L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 1322 RLSIIPQDPVMFEG-TVRSNLDPLE-----ESTDEQIWEALDKCQLGDEVRKKEGKLDSK 1375
+ + Q V L ++ E + + L D KL
Sbjct: 74 HRAYLSQQQTPPFATPVW---HYLTLHQHDKTRTELLNDVAGALALDD-------KLGRS 123
Query: 1376 VTENGENWSMGQRQLVCLGRVLL-------KRSKILMLDEATASVDTA----TDNLIQQT 1424
+ S G+ Q V L V+L ++L+LDE S+D A D ++
Sbjct: 124 TNQ----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179
Query: 1425 LRQHFSDCTVLTIAHRITSVID-------SDLVLLLNHGLIEEFDNPANLL 1468
+Q ++ +H D + LL G + +L
Sbjct: 180 SQQG---LAIVMSSH------DLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 4e-18
Identities = 42/217 (19%), Positives = 86/217 (39%), Gaps = 46/217 (21%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682
L ++ +V G + + G G+GKS+LL+ + G G+++ G
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALH 74
Query: 683 KAYVAQSPWIQSG-KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGI 741
+AY++Q + + + ++ R + D L + ++
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQ-HDKTRTELLNDVAGA---LALDDKLGRSTN----- 125
Query: 742 NLSGGQKQRIQIARALYQD-------SDIYLFDDPFSAVD-AHTGSHLFQEVLLGLLSS- 792
LSGG+ QR+++A + Q + L D+P +++D A Q L +LS+
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ------QSALDKILSAL 179
Query: 793 ----KTVIYVTHQVEFLPA--ADLILVMKDGKITQAG 823
++ +H + A ++K GK+ +G
Sbjct: 180 SQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASG 215
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 1e-19
Identities = 50/234 (21%), Positives = 108/234 (46%), Gaps = 28/234 (11%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
+ + DL+ R + +L+GIS GE G++G G+GK+T ++ + +++P++G +
Sbjct: 16 VVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLD--------PLEESTDEQIWEAL 1356
+ G ++ H++R +S +P++ + L E +E + A
Sbjct: 74 VFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSE-IEEMVERAT 131
Query: 1357 DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA 1416
+ LG+ K+ +V +S G + + + R L+ ++ +LDE T+ +D
Sbjct: 132 EIAGLGE-------KIKDRV----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 180
Query: 1417 TDNLIQQTLRQHFSD-CTVLTIAHRITSVID--SDLVLLLNHGLIEEFDNPANL 1467
+++ L+Q + T+L +H ++ D + L+++G I E L
Sbjct: 181 NAREVRKILKQASQEGLTILVSSH-NMLEVEFLCDRIALIHNGTIVETGTVEEL 233
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 1e-12
Identities = 47/238 (19%), Positives = 87/238 (36%), Gaps = 44/238 (18%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----------- 684
LK I+ ++ G + G G+GK++ L I + SG + + G
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90
Query: 685 -YVAQSPWIQSG-KIEDNILF-------GKEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
Y+ + + + + F E + L +
Sbjct: 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE-----------K 139
Query: 736 IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS-KT 794
I +R S G +++ IARAL + + + D+P S +D + +++L T
Sbjct: 140 IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN-AREVRKILKQASQEGLT 198
Query: 795 VIYVTH---QVEFLPAADLILVMKDGKITQAGKYNDLINSGTD------FMELVGAHE 843
++ +H +VEFL D I ++ +G I + G +L F E+V E
Sbjct: 199 ILVSSHNMLEVEFL--CDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCSE 254
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 6e-19
Identities = 65/227 (28%), Positives = 97/227 (42%), Gaps = 62/227 (27%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTKAYVAQSPWIQS 694
LK IN+ + G V V G GSGKS+ L C+ L E G + + G
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD-EGEIIIDGIN----------- 87
Query: 695 GKIEDNILFGKEMNRER---------YN-----AVLDACSL--------------KKDLE 726
++ +N+ R +N VL+ +L K +E
Sbjct: 88 --LKAK---DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAME 142
Query: 727 ILSFGDQTVIGERG----INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLF 782
+L D+ + ++ +LSGGQ QR+ IARAL + I LFD+P SA+D +
Sbjct: 143 LL---DKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP----EMV 195
Query: 783 QEVL---LGLLSSK-TVIYVTHQVEFL-PAADLILVMKDGKITQAGK 824
EVL L + T++ VTH++ F D +L M G I + GK
Sbjct: 196 GEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGK 242
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 4e-13
Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 28/167 (16%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS--LIGLHDL 1319
VL+GI+ GE ++G +GSGKST ++ L + + G+I+IDGI++ L+ +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1320 RSRLSIIPQD----PVMFEGTVRSN--LDPL------EESTDEQIWEALDKCQLGDEVRK 1367
R + ++ Q P M TV +N L P+ E + + E LDK L D+
Sbjct: 99 REEVGMVFQRFNLFPHM---TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA 155
Query: 1368 KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
L S GQ Q V + R L KI++ DE T+++D
Sbjct: 156 YPDSL-----------SGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 1e-18
Identities = 61/217 (28%), Positives = 98/217 (45%), Gaps = 44/217 (20%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQSPWI-- 692
L DI+L + G + + G G GK++LL C+ G E P SG + L G K +++ +
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-SGEISLSG-KTIFSKNTNLPV 77
Query: 693 ---------QSG------KIEDNILFGKEMNR----ERYNAVLDACSLKKDLEILSFGDQ 733
Q G + NI +G + + + LE+ +
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAM------LELTGISEL 131
Query: 734 TVIGERGIN-LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-----L 787
R + LSGGQ+QR +ARAL D ++ L D+PFSA+D + ++++
Sbjct: 132 ---AGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN 188
Query: 788 GLLSSKTVIYVTH-QVEFLPAADLILVMKDGKITQAG 823
G + ++V+H + E L AD I VMK G+I Q
Sbjct: 189 GK----SAVFVSHDREEALQYADRIAVMKQGRILQTA 221
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 5e-10
Identities = 54/266 (20%), Positives = 100/266 (37%), Gaps = 63/266 (23%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV----EPAA 1301
+ + L + VL IS + GE I+G +G GK+TL+ R + +P +
Sbjct: 5 LHIGHLSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKTTLL----RCLAGFEQPDS 58
Query: 1302 GQILIDGIDISLIGLH---DLRSRLSIIPQD----PVMFEGTVRSN----LDPLEESTDE 1350
G+I + G I + R RL + Q+ P + TV N L + T +
Sbjct: 59 GEISLSGKTIFSKNTNLPVRER-RLGYLVQEGVLFPHL---TVYRNIAYGLGNGKGRTAQ 114
Query: 1351 Q---IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLD 1407
+ I L+ + + + +L S GQ+Q L R L ++++LD
Sbjct: 115 ERQRIEAMLELTGISELAGRYPHEL-----------SGGQQQRAALARALAPDPELILLD 163
Query: 1408 EATASVDTATDNLIQQTLRQHFSDCTVLTIAHR--ITSVI---D-------SDLVLLLNH 1455
E +++D LR+ + ++ ++V D +D + ++
Sbjct: 164 EPFSALDEQ--------LRRQIRE-DMIAALRANGKSAVFVSHDREEALQYADRIAVMKQ 214
Query: 1456 GLIEEFDNPANLLENKSSSFSQLVAE 1481
G I + +P L + A
Sbjct: 215 GRILQTASPHELYRQPADLD---AAL 237
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 42/205 (20%)
Query: 656 GSGKSSLLSCILG-EVPKISGTLKLCG-----TKAY------VAQS----PWIQSGKIED 699
G+GKS L I G P G ++L G V Q P + +
Sbjct: 34 GAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL---SVYR 89
Query: 700 NILFG-KEMNR-ERYNAVLDACSLKKDLEILSFGDQTVIGERGIN-LSGGQKQRIQIARA 756
NI +G + + R ER V + E L + +R LSGG++QR+ +ARA
Sbjct: 90 NIAYGLRNVERVERDRRVREM------AEKLGIAH---LLDRKPARLSGGERQRVALARA 140
Query: 757 LYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-----LGLLSSKTVIYVTH-QVEFLPAADL 810
L + L D+P SAVD T L +E+ + +++VTH +E AD
Sbjct: 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV----PILHVTHDLIEAAMLADE 196
Query: 811 ILVMKDGKITQAGKYNDLINSGTDF 835
+ VM +G+I + GK +L ++
Sbjct: 197 VAVMLNGRIVEKGKLKELFSAKNGE 221
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 8e-11
Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 40/221 (18%)
Query: 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQD- 1329
G + ++G TG+GKS ++ + IV+P G++ ++G DI+ + R + +PQD
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER-RG-IGFVPQDY 79
Query: 1330 ---PVMFEGTVRSNLD-PLE----ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE 1381
P + +V N+ L D ++ E +K + + +K +L
Sbjct: 80 ALFPHL---SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARL--------- 127
Query: 1382 NWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR--QHFSDCTVLTIAH 1439
S G+RQ V L R L+ + ++L+LDE ++VD T ++ + LR Q D +L + H
Sbjct: 128 --SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185
Query: 1440 RITSVID-------SDLVLLLNHGLIEEFDNPANLLENKSS 1473
D +D V ++ +G I E L K+
Sbjct: 186 ------DLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNG 220
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 4e-18
Identities = 66/215 (30%), Positives = 97/215 (45%), Gaps = 47/215 (21%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTK----------- 683
L +++LKV G + G G+GK+ L I G VP SG + L G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLSPEKHDI 74
Query: 684 AYVAQS----PWIQSGKIEDNILFGKEMNR----ERYNAVLDACSLKKDLEILSFGDQTV 735
A+V Q+ P + ++ N+ FG M + +R DL+I D
Sbjct: 75 AFVYQNYSLFPHM---NVKKNLEFGMRMKKIKDPKRVLDTAR------DLKIEHLLD--- 122
Query: 736 IGERGIN-LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-----LGL 789
R LSGG++QR+ +ARAL + I L D+P SA+D T + + + L
Sbjct: 123 ---RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179
Query: 790 LSSKTVIYVTH-QVEFLPAADLILVMKDGKITQAG 823
TV+++TH Q E AD I V+ DGK+ Q G
Sbjct: 180 ----TVLHITHDQTEARIMADRIAVVMDGKLIQVG 210
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 48/242 (19%), Positives = 96/242 (39%), Gaps = 50/242 (20%)
Query: 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1320
L +S GE I+G TG+GK+ ++ + P +G+IL+DG D++ +
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK-- 71
Query: 1321 SR-LSIIPQD----PVMFEGTVRSNLD-PLE---ESTDEQIWEALDKCQLGDEVRKKEGK 1371
++ + Q+ P M V+ NL+ + +++ + ++ + +
Sbjct: 72 -HDIAFVYQNYSLFPHM---NVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLT 127
Query: 1372 LDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSD 1431
L S G++Q V L R L+ KIL+LDE +++D T ++ L
Sbjct: 128 L-----------SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV---- 172
Query: 1432 CTVLTIAHR--ITSVI---D-------SDLVLLLNHGLIEEFDNPANLLENKSSSFSQLV 1479
+ + +T + D +D + ++ G + + P + E V
Sbjct: 173 -----LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR---V 224
Query: 1480 AE 1481
A
Sbjct: 225 AS 226
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 5e-18
Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 40/213 (18%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQSPW--- 691
++ ++ ++ G V + G GSGK+++L I G E P G + + G + P
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT-KGDVWIGGKRV-TDLPPQKRN 88
Query: 692 ----IQS------GKIEDNILFGKEMNR----ERYNAVLDACSLKKDLEILSFGDQTVIG 737
Q+ + DN+ FG R E V + L +
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVREL------LRFMRLES---YA 139
Query: 738 ERGIN-LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-----LGLLS 791
R + LSGGQ+QR+ +ARAL + LFD+PF+A+D L V +G+
Sbjct: 140 NRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV-- 197
Query: 792 SKTVIYVTH-QVEFLPAADLILVMKDGKITQAG 823
T ++VTH Q E L AD +LV+ +G + Q G
Sbjct: 198 --TSVFVTHDQEEALEVADRVLVLHEGNVEQFG 228
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 4e-08
Identities = 63/264 (23%), Positives = 111/264 (42%), Gaps = 62/264 (23%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV----EPAA 1301
I+ + ++ Y ++G+S GE G++G +GSGK+T++ R++ P
Sbjct: 15 IEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKTTIL----RLIAGLERPTK 69
Query: 1302 GQILIDGIDISLIGLHDLRSRLSIIPQD----PVMFEGTVRSNL-------DPLEESTDE 1350
G + I G ++ L + + ++ Q+ M TV N+ ++ D
Sbjct: 70 GDVWIGGKRVT--DLPPQKRNVGLVFQNYALFQHM---TVYDNVSFGLREKRVPKDEMDA 124
Query: 1351 QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEAT 1410
++ E L +L + +L S GQ+Q V L R L R ++L+ DE
Sbjct: 125 RVRELLRFMRLESYANRFPHEL-----------SGGQQQRVALARALAPRPQVLLFDEPF 173
Query: 1411 ASVDTATDNLIQQTLRQHFSDCTVLTIAHR---ITSVI---D-------SDLVLLLNHGL 1457
A++DT ++ +RQ H +TSV D +D VL+L+ G
Sbjct: 174 AAIDTQIRRELRTFVRQ----------VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGN 223
Query: 1458 IEEFDNPANLLENKSSSFSQLVAE 1481
+E+F P + E + F VA
Sbjct: 224 VEQFGTPEEVYEKPGTLF---VAS 244
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 6e-18
Identities = 62/230 (26%), Positives = 100/230 (43%), Gaps = 56/230 (24%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTKAYVAQSPWIQS 694
LK ++L+ G +++ G+ GSGKS+ L CI E P G + + G + + Q
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS-EGAIIVNGQNINLVRDKDGQL 80
Query: 695 GKIEDNILFGKEMNRER---------YN-----AVLDACSL--------------KKDLE 726
+ ++ R +N VL+ ++ L+
Sbjct: 81 KVADK-----NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALK 135
Query: 727 ILSFGDQTVIGERG-----INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL 781
L + I ER ++LSGGQ+QR+ IARAL + D+ LFD+P SA+D L
Sbjct: 136 YL---AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD----PEL 188
Query: 782 FQEVLL---GLLSSK-TVIYVTHQVEFLPA---ADLILVMKDGKITQAGK 824
EVL L T++ VTH++ F A + ++ + GKI + G
Sbjct: 189 VGEVLRIMQQLAEEGKTMVVVTHEMGF--ARHVSSHVIFLHQGKIEEEGD 236
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 40/179 (22%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG------ 1315
VL+G+S G+ I+G +GSGKST ++ + + +P+ G I+++G +I+L+
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 1316 -------LHDLRSRLSIIPQD----PVMFEGTVRSN--LDPLE---ESTDEQIWEA---L 1356
L LR+RL+++ Q M TV N P++ S + A L
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHM---TVLENVMEAPIQVLGLSKHDARERALKYL 137
Query: 1357 DKCQLGDEVRKKE-GKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
K + + + K L S GQ+Q V + R L +L+ DE T+++D
Sbjct: 138 AKVGIDERAQGKYPVHL-----------SGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 4e-17
Identities = 51/220 (23%), Positives = 86/220 (39%), Gaps = 45/220 (20%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTKAYVAQSPWI 692
L ++N+ + +G R + G G+GK++ + I G +VP +G L +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGKLIV 77
Query: 693 QSGK-----------------IEDNILFGKEMNR----ERYNAVLDACSLKKDLEILSFG 731
+NI F + E V + + L+I
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI---LDIHHVL 134
Query: 732 DQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTG-------SHLFQE 784
+ LSG Q+QR+ +ARAL +D + L D+PFS +DA +
Sbjct: 135 NH-----FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189
Query: 785 VLLGLLSSKTVIYVTH-QVEFLPAADLILVMKDGKITQAG 823
LG+ T++ V+H + AD + V+ GK+ Q G
Sbjct: 190 --LGV----TLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-07
Identities = 52/273 (19%), Positives = 102/273 (37%), Gaps = 74/273 (27%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV----EPA 1300
+I + ++ + + L ++ GE+ GI+G +G+GK+T + RI+ P+
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFM----RIIAGLDVPS 58
Query: 1301 AGQILIDGIDISLIGLHDLRSRLSIIPQD-------------PVMFEGTVRSNLD-PLE- 1345
G++ D ++ G + P+D P + T N+ PL
Sbjct: 59 TGELYFDDRLVASNGKLIVP------PEDRKIGMVFQTWALYPNL---TAFENIAFPLTN 109
Query: 1346 -----ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1400
E +++ E + + +L S Q+Q V L R L+K
Sbjct: 110 MKMSKEEIRKRVEEVAKILDIHHVLNHFPREL-----------SGAQQQRVALARALVKD 158
Query: 1401 SKILMLDEATASVD----TATDNLIQQTLRQHFSDCTV---------LTIAHRITSVIDS 1447
+L+LDE +++D + L+++ ++ + IA R+ +
Sbjct: 159 PSLLLLDEPFSNLDARMRDSARALVKE-VQSRLGVTLLVVSHDPADIFAIADRV--GV-- 213
Query: 1448 DLVLLLNHGLIEEFDNPANLLENKSSSFSQLVA 1480
L G + + P +L +N S VA
Sbjct: 214 -----LVKGKLVQVGKPEDLYDNPVSIQ---VA 238
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 8e-17
Identities = 65/266 (24%), Positives = 115/266 (43%), Gaps = 40/266 (15%)
Query: 1224 PSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLV--LQGISCTFPGGEKTGIVGR 1281
+D I L ++ + + L +S P G+ G++G
Sbjct: 5 HHHHHHHHSSGHIDDDDKHM--IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGA 62
Query: 1282 TGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI---GLHDLRSRLSIIPQD-PVMFEGTV 1337
+G+GKSTLI+ + + P G +L+DG +++ + L R ++ +I Q ++ TV
Sbjct: 63 SGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTV 122
Query: 1338 RSNLD-PLE------ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1390
N+ PLE + ++ E L LGD+ L S GQ+Q
Sbjct: 123 FGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL-----------SGGQKQR 171
Query: 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR---QHFSDCTVLTIAHRITSVIDS 1447
V + R L K+L+ D+AT+++D AT I + L+ + T+L I H + V+
Sbjct: 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEM-DVVKR 229
Query: 1448 --DLVLLLNHGLIEE-------FDNP 1464
D V ++++G + E F +P
Sbjct: 230 ICDCVAVISNGELIEQDTVSEVFSHP 255
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-12
Identities = 56/230 (24%), Positives = 94/230 (40%), Gaps = 59/230 (25%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGT-------KAYVA 687
L +++L V G V G G+GKS+L+ C+ L E P G++ + G
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQELTTLSESELTK 102
Query: 688 QSPWI----------QSGKIEDNILF-------GKEMNRERYNAVLDACSL--KKDLEIL 728
I S + N+ K+ + R +L L K D
Sbjct: 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD---- 158
Query: 729 SFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-- 786
S+ LSGGQKQR+ IARAL + + L D SA+D T + +L
Sbjct: 159 SYPSN---------LSGGQKQRVAIARALASNPKVLLCDQATSALDPATT----RSILEL 205
Query: 787 -------LGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDL 828
LGL T++ +TH+++ + D + V+ +G++ + +++
Sbjct: 206 LKDINRRLGL----TILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 3e-16
Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 42/214 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTKAYVAQSP--- 690
LK I+L V G V++ G GSGKS+LL ILG + P G + L G + V +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPT-EGKVFLEGKE--VDYTNEKE 75
Query: 691 --WIQSGKI---------------EDNI----LFGKEMNRERYNAVLDACSLKKDLEILS 729
+++ K+ +N+ L + +E L L
Sbjct: 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL------LSELG 129
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789
GD+ + + LSGG++QR+ IARAL + + D+P +D+ + +
Sbjct: 130 LGDK--LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD--IFLK 185
Query: 790 LSS--KTVIYVTHQVEFLPAADLILVMKDGKITQ 821
++ +++ VTH+ E L MKDGK+
Sbjct: 186 INEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 7e-11
Identities = 49/215 (22%), Positives = 94/215 (43%), Gaps = 42/215 (19%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
+ +++ + +L+GIS + GE I+G +GSGKSTL+ L + P G++
Sbjct: 5 LRAENIKKVI--RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 1306 IDGIDISLIG---LHDLRSRLSI---------IPQD--------PVMFEGTVRSNLDPLE 1345
++G ++ L LR+R + IP+ P++ G P +
Sbjct: 63 LEGKEVDYTNEKELSLLRNR-KLGFVFQFHYLIPELTALENVIVPMLKMGK------PKK 115
Query: 1346 ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILM 1405
E+ E+ L + LGD++ +K +L S G++Q V + R L +L
Sbjct: 116 EAK-ERGEYLLSELGLGDKLSRKPYEL-----------SGGEQQRVAIARALANEPILLF 163
Query: 1406 LDEATASVDTATDNLIQQTLRQ-HFSDCTVLTIAH 1439
DE T ++D+A + + + +++ + H
Sbjct: 164 ADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTH 198
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 5e-16
Identities = 62/224 (27%), Positives = 92/224 (41%), Gaps = 61/224 (27%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTKAYVAQSP--- 690
LK++NL + G V++ G GSGKS++L+ I+G + P G + + K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPT-EGEVYIDNIK--TNDLDDDE 76
Query: 691 --WIQSGKI---------------EDNIL----------FGKEMNRERYNAVLDACSLKK 723
I+ KI +N+ E R+R L L
Sbjct: 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL-- 134
Query: 724 DLEILSFGDQTVIGERGIN-----LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTG 778
ER N LSGGQ+QR+ IARAL + I L D P A+D+ TG
Sbjct: 135 -------------EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTG 181
Query: 779 S---HLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKI 819
L ++ L KTV+ VTH + + I+ +KDG++
Sbjct: 182 EKIMQLLKK--LNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 6e-08
Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 37/187 (19%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LHD 1318
L+ ++ GE I+G +GSGKST++ + + +P G++ ID I + + L
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 1319 LRSRLSI---------IPQD--------PVMFEGTVRSNLDPLEESTDEQIWEALDKCQL 1361
+R I IP P++F+ R + E ++ E L +L
Sbjct: 80 IRRD-KIGFVFQQFNLIPLLTALENVELPLIFKY--RGAMSGEERR--KRALECLKMAEL 134
Query: 1362 GDEVRK-KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNL 1420
+ K +L S GQ+Q V + R L I++ D+ T ++D+ T
Sbjct: 135 EERFANHKPNQL-----------SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183
Query: 1421 IQQTLRQ 1427
I Q L++
Sbjct: 184 IMQLLKK 190
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 1e-15
Identities = 69/218 (31%), Positives = 99/218 (45%), Gaps = 46/218 (21%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTK--------- 683
L +INLK+ G +A+ G GSGKS+LL I G P SG +
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT-SGKIYFDEKDVTELPPKDR 75
Query: 684 --AYVAQS----PWIQSGKIEDNILFGKEMNR----ERYNAVLDACSLKKDLEILSFGDQ 733
V Q+ P + + NI F E+ + E V + + L I ++
Sbjct: 76 NVGLVFQNWALYPHM---TVYKNIAFPLELRKAPREEIDKKVREVAKM---LHIDKLLNR 129
Query: 734 TVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA-------HTGSHLFQEVL 786
LSGGQ+QR+ IARAL ++ ++ L D+P S +DA L +E
Sbjct: 130 -----YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKE-- 182
Query: 787 LGLLSSKTVIYVTH-QVEFLPAADLILVMKDGKITQAG 823
LG+ T +YVTH Q E L AD I V+++G+I Q G
Sbjct: 183 LGI----TTVYVTHDQAEALAMADRIAVIREGEILQVG 216
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 57/258 (22%), Positives = 97/258 (37%), Gaps = 83/258 (32%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV----EPAAGQILIDGIDISLIGLH 1317
L I+ GE ++G +GSGKSTL+ + +P +G+I D D++
Sbjct: 18 ALNNINLKIKDGEFMALLGPSGSGKSTLL----YTIAGIYKPTSGKIYFDEKDVT----- 68
Query: 1318 DLRSRLSIIPQD-------------PVMFEGTVRSNLD-PLE------ESTDEQIWEALD 1357
+L P+D P M TV N+ PLE E D+++ E
Sbjct: 69 ELP------PKDRNVGLVFQNWALYPHM---TVYKNIAFPLELRKAPREEIDKKVREVAK 119
Query: 1358 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDE------ATA 1411
+ + + +L S GQ+Q V + R L+K ++L+LDE A
Sbjct: 120 MLHIDKLLNRYPWQL-----------SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALL 168
Query: 1412 SVDTATDNLIQQTLRQHFSDCTV---------LTIAHRITSVIDSDLVLLLNHGLIEEFD 1462
++ + +++ L++ TV L +A RI + + G I +
Sbjct: 169 RLEVRAE--LKR-LQKELGITTVYVTHDQAEALAMADRI--AV-------IREGEILQVG 216
Query: 1463 NPANLLENKSSSFSQLVA 1480
P + F V
Sbjct: 217 TPDEVYYKPKYKF---VG 231
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 79.7 bits (196), Expect = 5e-15
Identities = 56/253 (22%), Positives = 97/253 (38%), Gaps = 31/253 (12%)
Query: 583 IQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLK 642
+ + I F + V + D+ + FS + L L+
Sbjct: 399 FLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAK-ILLNKTQLR 457
Query: 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-AYVAQSPWIQSGKIEDNI 701
+ R +CG G GKS+L+ I ++ G + YV I + ++
Sbjct: 458 LKRARRYGICGPNGCGKSTLMRAIANG--QVDGFPTQEECRTVYVEHD--IDGTHSDTSV 513
Query: 702 L-FGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGI-NLSGGQKQRIQIARALYQ 759
L F E A+ K L F D+ + I LSGG K ++ +ARA+ +
Sbjct: 514 LDFVFESGVGTKEAI------KDKLIEFGFTDEMI--AMPISALSGGWKMKLALARAVLR 565
Query: 760 DSDIYLFDDPFSAVDAHTGSHLFQEVLLGL---LSS--KTVIYVTHQVEFL-PAADLILV 813
++DI L D+P T +HL + L L++ T I ++H FL + I+
Sbjct: 566 NADILLLDEP-------T-NHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIIN 617
Query: 814 MKDGKITQ-AGKY 825
+ K+ + G +
Sbjct: 618 YEGLKLRKYKGNF 630
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 2e-11
Identities = 38/180 (21%), Positives = 62/180 (34%), Gaps = 28/180 (15%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
+L + GI G G GKSTL++ I + +
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMR-------------AIANGQVDGFPTQE-EC 495
Query: 1322 RLSIIPQDPVMFEG--TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1379
R + D +V + T E I + L + DE + ++
Sbjct: 496 RTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDE------MIAMPISA- 548
Query: 1380 GENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439
S G + + L R +L+ + IL+LDE T +DT + L T +TI+H
Sbjct: 549 ---LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-07
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 721 LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSH 780
+++ +L + V R LSGGQK ++ +A +Q + + D+P T ++
Sbjct: 880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEP-------T-NY 931
Query: 781 LFQEVLLGLLS-----SKTVIYVTHQVEFLPA-ADLILVMKDGKITQ-AGKY 825
L ++ L L VI +TH EF + + +KDG++T +
Sbjct: 932 LDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNW 983
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 3e-07
Identities = 33/181 (18%), Positives = 68/181 (37%), Gaps = 10/181 (5%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK---AYVAQSP 690
P + DIN + R+AV G G+GKS+L++ + GE+ SG + AY+ Q
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT-HENCRIAYIKQHA 745
Query: 691 WIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750
+ D E + R+ D ++ + ++ D + + I G +R
Sbjct: 746 FAHIESHLDKTPS--EYIQWRFQTGEDRETMDRANRQINENDAEAMNK--IFKIEGTPRR 801
Query: 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVI--YVTHQVEFLPAA 808
I + + + Y ++ F + ++ + ++ V + +
Sbjct: 802 IAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEV 861
Query: 809 D 809
D
Sbjct: 862 D 862
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 1e-05
Identities = 29/183 (15%), Positives = 60/183 (32%), Gaps = 3/183 (1%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI-DG 1308
+++ +Y + I+ + ++G G+GKSTLI L + P +G++ +
Sbjct: 676 NMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN 735
Query: 1309 IDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKK 1368
I+ I H S + + P + + E + + +++ K
Sbjct: 736 CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKI 795
Query: 1369 EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQH 1428
EG + + C + SVD A + + L +
Sbjct: 796 EGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNA--WIPRGELVES 853
Query: 1429 FSD 1431
S
Sbjct: 854 HSK 856
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-14
Identities = 62/219 (28%), Positives = 91/219 (41%), Gaps = 48/219 (21%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKIS-GTLKLCGTK-------- 683
+ ++ +V G VA+ G G GK++ L + G K + G +
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY--KPTSGEIYFDDVLVNDIPPKY 74
Query: 684 ---AYVAQS----PWIQSGKIEDNILFGKEMNR----ERYNAVLDACSLKKDLEILSFGD 732
V Q+ P + + +NI F R E V++ L I + D
Sbjct: 75 REVGMVFQNYALYPHM---TVFENIAFPLRARRISKDEVEKRVVEIARK---LLIDNLLD 128
Query: 733 QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA-------HTGSHLFQEV 785
+ + LSGGQ+QR+ +ARAL + + LFD+P S +DA HL QE
Sbjct: 129 R-----KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE- 182
Query: 786 LLGLLSSKTVIYVTH-QVEFLPAADLILVMKDGKITQAG 823
LG T +YVTH Q E + A I V GK+ Q G
Sbjct: 183 -LG----ITSVYVTHDQAEAMTMASRIAVFNQGKLVQYG 216
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 1e-13
Identities = 61/219 (27%), Positives = 91/219 (41%), Gaps = 48/219 (21%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTK-------- 683
+ +NL + G + + G G GK++ L I G E G +
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT--EGRIYFGDRDVTYLPPKD 82
Query: 684 ---AYVAQS----PWIQSGKIEDNILFGKEMNR----ERYNAVLDACSLKKDLEILSFGD 732
+ V QS P + + +NI F ++ + E V A L L+I +
Sbjct: 83 RNISMVFQSYAVWPHM---TVYENIAFPLKIKKFPKDEIDKRVRWAAEL---LQIEELLN 136
Query: 733 QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA-------HTGSHLFQEV 785
+ LSGGQ+QR+ +ARA+ + D+ L D+P S +DA L Q+
Sbjct: 137 R-----YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK- 190
Query: 786 LLGLLSSKTVIYVTH-QVEFLPAADLILVMKDGKITQAG 823
L T IYVTH QVE + D I VM G++ Q G
Sbjct: 191 -LK----VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 22/168 (13%)
Query: 1250 DLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309
L V Y ++GI P G+ ++G G+GK+T + + +V G+I+ +G
Sbjct: 11 SLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ 68
Query: 1310 DISLIGLHDL-RSRLSIIPQDPVMFEG-TVRSNLD--PLEESTDEQIWEALDKC-----Q 1360
DI+ H + R ++++P+ +F TV NL E I L+ +
Sbjct: 69 DITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPR 128
Query: 1361 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDE 1408
L + +++ G L S G++Q++ +GR L+ R K+LM+DE
Sbjct: 129 LKERLKQLGGTL-----------SGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 6e-06
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 47/163 (28%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 684
+K I+LKV G V + G G+GK++ LS I G V G + G +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 685 YVAQSPWIQSGK-------IEDNILFGKEMNRERYNAVLDACSLKKDLE-------ILSF 730
+A P G+ + +N++ G +++ +K+DLE L
Sbjct: 82 GIALVP---EGRRIFPELTVYENLMMGAYNRKDKEG-------IKRDLEWIFSLFPRL-- 129
Query: 731 GDQTVIGER----GINLSGGQKQRIQIARALYQDSDIYLFDDP 769
ER G LSGG++Q + I RAL + + D+P
Sbjct: 130 ------KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP 166
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 5e-13
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 14/90 (15%)
Query: 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA----HTG---SHLFQEVLLGLLSSKT 794
LSGGQ+QR+ + RA+ + ++L D+P S +DA L ++ LG T
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ--LG----VT 192
Query: 795 VIYVTH-QVEFLPAADLILVMKDGKITQAG 823
IYVTH QVE + D I VM G + Q G
Sbjct: 193 TIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 2e-12
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 26/96 (27%)
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA-------------HTGSHLFQEVLLGL 789
LSGGQ+QR+ I R L + ++L D+P S +DA H + LG
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH------KR--LG- 184
Query: 790 LSSKTVIYVTH-QVEFLPAADLILVMKDGKITQAGK 824
+T+IYVTH QVE + AD I+V+ G++ Q GK
Sbjct: 185 ---RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 2e-11
Identities = 53/466 (11%), Positives = 137/466 (29%), Gaps = 130/466 (27%)
Query: 1103 VIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSIT 1162
++ F + + +FD +D + + + + + D +S
Sbjct: 21 ILSVFEDAF-----VDNFD----CKD-----VQDMPKSILSKEEIDHIIMSK-DAVSGTL 65
Query: 1163 FAFTLVFL--ISIPKGFIDPAIAGLAVTYGLTLNTL--------LATLIWFACDLENKII 1212
F + + + F++ L + Y ++ + + T ++ +++
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEV---LRINYKFLMSPIKTEQRQPSMMTRMYIEQ--RDRLY 120
Query: 1213 SVERIFQYTCIPSEPPL-----AIEESRPNDSWPSHGKIDLLDLQVRYAPQMP------L 1261
+ ++F + P A+ E RP + G + +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG--------------VLGSGKTWV 166
Query: 1262 VLQ-----GISCTFPGGEKTGI----VGRTGSGKSTL--IQTLFRIVEPAAGQILIDGID 1310
L + C I + S ++ L +Q L ++P D
Sbjct: 167 ALDVCLSYKVQCKMDFK----IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS-RSDHSS 221
Query: 1311 ISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALD-KCQ--------- 1360
+ +H +++ L + + L L + + W A + C+
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPY----ENC-LLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 1361 LGDEVRKKEGKLDSKVTENGENWSMGQRQL------------------VCLGRVLL---- 1398
+ D + + ++ + + ++ ++ V
Sbjct: 277 VTDFL---SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 1399 -----------KRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDS 1447
K + D+ T ++++ + L R+ F +V + I +++
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-- 391
Query: 1448 DLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSFENL 1493
L L+ + + N L S LV + S+ S ++
Sbjct: 392 -LSLIWFDVIKSDVMVVVNKLHKYS-----LVEKQPKESTISIPSI 431
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 5e-10
Identities = 95/637 (14%), Positives = 189/637 (29%), Gaps = 183/637 (28%)
Query: 572 IYNLPDVIS----MIIQTKVSLQRIASFFCLDDLQPD---LVE------KQPSGSSETAL 618
I D +S + + + F + L+ + L+ +QPS + +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 619 DIVDGNFS-------WDISSHNP--TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE 669
+ D ++ +++S P L+ L++ V + G +GSGK+ +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV------- 166
Query: 670 VPKISGTLKLCGTKAYVAQSP----WIQSGKI--EDNILFGKEMNRERYNAVLDACSLKK 723
L +C + + W+ + +L + + + Y + S
Sbjct: 167 ------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKLLYQIDPNWTSR-- 216
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSA--VDAHTGSHL 781
D + + I+ S + R + Y++ + L + +A +A
Sbjct: 217 -------SDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVL-LNVQNAKAWNA------ 261
Query: 782 FQEVLLGLLSSKTVI-----YVTHQVEFLPAADLILVMKDGKITQAGKYNDLINS-GTDF 835
F LS K ++ VT + + L +T + L+
Sbjct: 262 FN------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 836 MELVGAHEQAL----LALGSIEGRPASERASGENGGTVIANRI--VKEVENNKGQNDKAD 889
+L + L L I S R +G K V +K
Sbjct: 316 QDL---PREVLTTNPRRLSII---AESIR----DG----LATWDNWKHVNCDK----LTT 357
Query: 890 EVAVSKGQLVQEEEREKGKVGFSVYWKYITTAF-GGALVPFILLAQTLFQILQIASNYWI 948
+ S L E R+ ++ + + F A +P ILL+ +
Sbjct: 358 IIESSLNVLEPAEYRK-------MFDRL--SVFPPSAHIPTILLS--------------L 394
Query: 949 VWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMH--Y 1006
+W DV VV L + +L+ K +T+ + Y
Sbjct: 395 IWFDVIKSDVMVVVNK------------------LHKYSLVE-KQPKESTI---SIPSIY 432
Query: 1007 CIFRAPMSFFDATPSGRIINRASTDQS--AADLGIPSLVG------AYAFSIIRILGTIA 1058
+ + + I++ + ++ + DL P L + I +
Sbjct: 433 LELKVKLE-NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 1059 VMSQV----------------AWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAP 1102
+ V AW + + +Y+ Y + + RLV
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN----- 546
Query: 1103 VIQHFAETVSGSTTIRSFDQESRFRD-RNMKLMDEYS 1138
I F + I S++ D + LM E
Sbjct: 547 AILDFLPKI-EENLIC-----SKYTDLLRIALMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 7e-08
Identities = 91/657 (13%), Positives = 191/657 (29%), Gaps = 190/657 (28%)
Query: 248 KKTLDLEDVPQLDSGDSVSGAFAN--FKNKLETEGGVGSGLTTVKLIKAMFCSVWKDVLV 305
D +DV D + + + ++ + S +++ V
Sbjct: 30 VDNFDCKDVQ-----DMPKSILSKEEIDHIIM----SKDAVSGTLRLFWTLLSKQEEM-V 79
Query: 306 TGFL-TVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKL---VECLCQRF 361
F+ VL +Y +L+ + + Y+ +L + +
Sbjct: 80 QKFVEEVLRI--NY--KFLMSPI-KTEQRQPSMMTRMYI----EQRDRLYNDNQVFAKYN 130
Query: 362 RVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSS--GEIINFMTVDAERVADFSWYI 419
V RLQ +++R AL+ + K + + G++ ++ + + I
Sbjct: 131 -VSRLQPY-LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL----SYKVQCKMDFKI 184
Query: 420 HDPWLVLFEV--ALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKD 477
WL L ++L + + L + + + + NI L + Q +L +
Sbjct: 185 F--WLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLR--IHSIQAELRRLLK 239
Query: 478 ERMKATS-EILRNMRILKLQGWE-MKFLSKIINLRKRETGWLKKYVYT--SAISSFVFWG 533
+ +L N++ K W KI+ + T ++ F+
Sbjct: 240 SKPYENCLLVLLNVQNAKA--WNAFNLSCKIL-------------LTTRFKQVTDFLSAA 284
Query: 534 APTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPD--------VISMI--- 582
T +S+ ++ L ++ S + + L +LP +S+I
Sbjct: 285 TTTHISL------DHHSMTLTPDEVKSLLLKY--LDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 583 ----IQT-----KVSLQRIASFF--CLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISS 631
+ T V+ ++ + L+ L+P K L + F
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-----FDRLSV----FPPSA-- 385
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 691
I + ++ W
Sbjct: 386 ------HIPTILL--------------------SLI-----------------------W 396
Query: 692 IQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751
D ++ ++++ ++K ++ I I L K
Sbjct: 397 FDV-IKSDVMVVVNKLHK--------YSLVEKQ------PKESTISIPSIYLELKVKLEN 441
Query: 752 QIA--RAL---YQDSDIYLFDDPF-SAVD----AHTGSHL-----------FQEVLLGL- 789
+ A R++ Y + DD +D +H G HL F+ V L
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 790 -LSSKTVIYVTHQVEFLPAADLILVMKDGK--IT-QAGKYNDLINSGTDFMELVGAH 842
L K T + + +K K I KY L+N+ DF+ + +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 57/243 (23%)
Query: 1256 APQMP-LVLQGISCTFPG-------------GEKTGIVGRTGSGKSTLIQTLFRIVEPAA 1301
M L + I F G+ T I+G GSGKSTLI + ++
Sbjct: 2 RDTMEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE 61
Query: 1302 GQILIDGIDISLIGLHDL------R--------SRLSIIPQDPVM--FEGTVRSNLDPL- 1344
G++ + DI+ +L R ++++ + ++ S L+ L
Sbjct: 62 GRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVL--ENLLIGEICPGESPLNSLF 119
Query: 1345 -------EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397
EE E+ ++ L+ +L +K G+L S GQ +LV +GR L
Sbjct: 120 YKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL-----------SGGQMKLVEIGRAL 168
Query: 1398 LKRSKILMLDEATASV-DTATDNLIQ--QTLRQHFSDCTVLTIAHRITSVID-SDLVLLL 1453
+ K++++DE A V ++ L+ T L I HR+ V++ D + ++
Sbjct: 169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK--GITFLIIEHRLDIVLNYIDHLYVM 226
Query: 1454 NHG 1456
+G
Sbjct: 227 FNG 229
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 721 LKKDLEILSFGDQTVIGERGIN-LSGGQKQRIQIA------RALYQDSDIYLFDDPFSAV 773
++ + + ER + LSGG++ + +A L + + + D+P +
Sbjct: 226 VRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYL 285
Query: 774 DAHTGSHLFQEVLLGLLSS-KTVIYVTHQVEFLPAAD-LILVMKDG 817
D L ++ L VI V+H E AAD +I + +
Sbjct: 286 DEERRRKLI-TIMERYLKKIPQVILVSHDEELKDAADHVIRISLEN 330
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 5e-05
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 721 LKKDLEILSFGDQTVIGERGIN-LSGGQKQRIQIA------RALYQDSDIYLFDDPFSAV 773
++ + + ER + LSGG++ + +A L + + + D+P +
Sbjct: 35 VRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYL 94
Query: 774 DAHTGSHLFQEVLLGLLSS-KTVIYVTHQVEFLPAADLIL 812
D L ++ L VI V+H E AAD ++
Sbjct: 95 DEERRRKLI-TIMERYLKKIPQVILVSHDEELKDAADHVI 133
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1496 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.97 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.97 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.96 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.94 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.94 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.94 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.92 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.92 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.92 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.91 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.91 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.91 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.9 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.87 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.87 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.87 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.87 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.86 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.85 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.85 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.85 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.85 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.82 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.82 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.8 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.8 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.77 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.77 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.77 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.76 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.76 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.76 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.75 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.75 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.74 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.74 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.74 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.73 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.72 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.72 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.72 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.72 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.71 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.71 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.71 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.7 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.7 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.69 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.68 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.67 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.66 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.66 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.65 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.65 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.63 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.63 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.63 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.62 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.62 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.62 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.62 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.62 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.61 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.6 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.6 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.59 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.59 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.59 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.58 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.57 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.57 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.57 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.57 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.56 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.56 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.55 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.55 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.54 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.53 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.53 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.53 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.51 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.51 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.49 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.48 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.48 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.48 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.48 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.47 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.46 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.44 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.44 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.44 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.43 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.41 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.41 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.41 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.4 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.4 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.4 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.39 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.39 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.38 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.38 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.37 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.36 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.35 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.35 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.34 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.34 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.34 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.33 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.33 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.29 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.26 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.26 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.25 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.24 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.23 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.22 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.2 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.2 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.18 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.18 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.17 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.15 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.15 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.14 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.13 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.12 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.11 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.11 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.09 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.07 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.06 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.04 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.03 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.01 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.0 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.97 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.97 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.96 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.95 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.95 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.95 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.93 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.92 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.92 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.92 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.91 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.89 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.87 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.87 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.86 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.85 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.84 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.83 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.82 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.77 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.76 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.76 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.75 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.75 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.72 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.71 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.69 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.68 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.65 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.63 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.61 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.59 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.55 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.54 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.53 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.51 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.49 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.48 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.47 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.47 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.47 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.47 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.46 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.46 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.46 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.45 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.4 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.38 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.38 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.38 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.37 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.36 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.32 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.28 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.27 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.27 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.24 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.22 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.22 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.2 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.15 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.15 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.12 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.11 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.08 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.05 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.04 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.03 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.03 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.02 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.01 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.0 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.0 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.99 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 97.99 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.97 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.94 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.93 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.91 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.9 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.87 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.86 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.86 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.86 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.8 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.8 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.8 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.78 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.78 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.77 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.76 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.71 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.7 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.66 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.65 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.65 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.65 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.65 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.63 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.63 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.63 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.62 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.62 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.61 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.57 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.53 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.51 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.5 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.49 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.46 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.45 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.44 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.42 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.37 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.35 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.35 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.34 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.28 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.27 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.25 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.25 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.22 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.17 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.16 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.14 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.14 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.1 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.1 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.09 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.07 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.06 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.04 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.03 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.03 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.01 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.0 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.99 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.93 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.92 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.91 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.88 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.87 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 96.86 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.85 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.8 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.8 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.8 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.79 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.78 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.76 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.76 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.71 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.68 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.66 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.61 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.58 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.57 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.55 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.54 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.54 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.53 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.5 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.5 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.46 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.46 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.45 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.42 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.41 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.41 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.39 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.38 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.37 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.37 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.35 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.33 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.31 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.28 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.27 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.24 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.2 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.17 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.16 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.15 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.15 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.14 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.13 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.11 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.11 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.09 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.08 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.08 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.06 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.04 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.0 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.96 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.96 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 95.94 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.92 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 95.92 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.92 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.9 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.85 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.84 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.66 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.61 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.6 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.59 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.57 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.5 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.5 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.45 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.44 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 95.4 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.38 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.31 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.3 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.29 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.25 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.15 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.15 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.13 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.1 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.09 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.03 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.0 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 94.99 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.96 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 94.95 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 94.94 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 94.91 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 94.89 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 94.8 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 94.8 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 94.78 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 94.72 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.71 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.58 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 94.53 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.52 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 94.51 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.43 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 94.31 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.28 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 94.26 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 94.17 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.14 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 94.13 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 94.07 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.04 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 94.04 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.0 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 93.97 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 93.97 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 93.96 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 93.95 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-171 Score=1748.59 Aligned_cols=1233 Identities=19% Similarity=0.228 Sum_probs=927.9
Q ss_pred HHccc-cCCCCCCCCCCCCCCCcHhHHHHHHHHHHhhccCC-----------CCCCchhhHHHHHHHH-hHHHHHHHHHH
Q 039402 243 IALGN-KKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGV-----------GSGLTTVKLIKAMFCS-VWKDVLVTGFL 309 (1496)
Q Consensus 243 ~~~g~-~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~-----------~~~~~~~~l~~al~~~-~~~~~~~~~~~ 309 (1496)
++.|. +++|+.+|.+.+.|+|..+...+.+++.|...... +...++.+ ++.++|. -+++.++.++-
T Consensus 2 ~r~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~Lfrya~~~d~~l~~~g 80 (1321)
T 4f4c_A 2 LRNGSLRQSLRTLDSFSLAPEDVLKTAIKTVEDYEGDNIDSNGEIKITRDAKEEVVNKVS-IPQLYRYTTTLEKLLLFIG 80 (1321)
T ss_dssp --CHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTSTTTBCSSSCBCCSCC---CCSSCCC-HHHHTTTCCHHHHHHHHHH
T ss_pred CCCchhhcCCcccccccCCchhhcccccchhhhhcccccccccccchhhhhhhcccCCCC-HHHHhhccChHHHHHHHHH
Confidence 44444 45799999999999999999999998887553210 00111223 3345542 13333333332
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHhcCC-------C--------Cc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 310 TVLYTLASYVGP---YLIDTFVQYLNGR-------R--------DF-----ENEGYVLVSAFCVAKLVECLCQRFRVFRL 366 (1496)
Q Consensus 310 ~l~~~~~~~~~P---~ll~~~i~~~~~~-------~--------~~-----~~~g~~l~~~l~~~~~~~~l~~~~~~~~~ 366 (1496)
.++..+...+.| ++++++++.+.+. . .. ......++..++...+...++.....+..
T Consensus 81 ~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 160 (1321)
T 4f4c_A 81 TLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCY 160 (1321)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444 4555665543210 0 00 01111222233333333444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039402 367 QQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFS-WYIHDPWLVLFEVALSILILYKNLGIASL 445 (1496)
Q Consensus 367 ~~~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~pl~i~~~~~lL~~~lg~~~l 445 (1496)
...|.|+-..++..+|+|.++++...++++++|+++|++++|++++++++ ..+..++..++.++.++++++..-...++
T Consensus 161 ~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~l 240 (1321)
T 4f4c_A 161 LYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTL 240 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777788888999999999999999999999999999999999975 45778888888888888877766555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 446 AALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSA 525 (1496)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~ 525 (1496)
+.++++++++++...+.+...+..++.++..+++.+.++|.++|||+||+|+||+.+.+++.+..++..+...+......
T Consensus 241 v~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1321)
T 4f4c_A 241 VMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLG 320 (1321)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778888899999999999999999999999999999999999999999999988776666555544444444
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 039402 526 ISSFVFWGAP--TFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQP 603 (1496)
Q Consensus 526 ~~~~~~~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~ 603 (1496)
.......... .++.+++++++.+.++.+++|.+++++.++..+..|+..++..+..+.++.+|++||.+|++.++..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 400 (1321)
T 4f4c_A 321 ISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVID 400 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 3333332222 23445567778888999999999999999999999999999999999999999999999998765432
Q ss_pred cccc-CCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC-
Q 039402 604 DLVE-KQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG- 681 (1496)
Q Consensus 604 ~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g- 681 (1496)
+... ..+.......|+++|++|+|+..+++++|+|+||+|++||++|||||+|||||||+++|+|+++|++|+|.++|
T Consensus 401 ~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~ 480 (1321)
T 4f4c_A 401 SSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV 480 (1321)
T ss_dssp CSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred ccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCc
Confidence 2211 11122234579999999999866678999999999999999999999999999999999999999999999999
Q ss_pred ------------eeEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 682 ------------TKAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 682 ------------~~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++|||+|+||+|++||||||+||.+ .+++++.++++.|++++|++.+|+|++|+|||+|.+||||||
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQk 560 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQK 560 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHH
T ss_pred cchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHH
Confidence 4799999999999999999999986 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l 828 (1496)
|||+||||+|+||+||||||||||||+++++ ++++++.++.+|||+|+|||+++.++.||+|++|++|+|+++|+|+||
T Consensus 561 QRiaiARAl~~~~~IliLDE~tSaLD~~te~-~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL 639 (1321)
T 4f4c_A 561 QRIAIARALVRNPKILLLDEATSALDAESEG-IVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRAL 639 (1321)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCTTTHH-HHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHccCCCEEEEecccccCCHHHHH-HHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHH
Confidence 9999999999999999999999999999855 556788888999999999999999999999999999999999999999
Q ss_pred HhcCcchHHHHHHhHHHHhhhCCCCCCCCccCC--CCCCCCccccccc--hhhhcc-ccCC------C-Cchhhhhh---
Q 039402 829 INSGTDFMELVGAHEQALLALGSIEGRPASERA--SGENGGTVIANRI--VKEVEN-NKGQ------N-DKADEVAV--- 893 (1496)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~-~~~~------~-~~~~~~~~--- 893 (1496)
++.++.|.+++..+..........+.....+.. ............. .++... .+.. + ...++++.
T Consensus 640 ~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1321)
T 4f4c_A 640 MAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEERIG 719 (1321)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCC--------------------------------------------------CCCC
T ss_pred HHhhhHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhccccccccCCcchhHHHhhcc
Confidence 999999999987654322111000000000000 0000000000000 000000 0000 0 00000000
Q ss_pred -hccchhHHHHHhhccchHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHhhhHHHhhcCC-C-CCCCCcccchHHHH
Q 039402 894 -SKGQLVQEEEREKGKVGFSVYWKYITTAFGGA-LVPFILLAQTLFQILQIASNYWIVWATPG-T-KDVKPVVTGSTLLI 969 (1496)
Q Consensus 894 -~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~wl~~~~~~-~-~~~~~~~~~~~~l~ 969 (1496)
......+++.++.|......|+.| ....+.+ .+.+.+++.++.........+|+.+|... . ..........+|..
T Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1321)
T 4f4c_A 720 KDALSRLKQELEENNAQKTNLFEIL-YHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWAL 798 (1321)
T ss_dssp CCHHHHHHHTTTTSCCCCCCHHHHH-HHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHH
T ss_pred chhHHHHHHHHHHcCCcceeHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHH
Confidence 000111222233333333333322 2222322 22222222222222222233333322111 0 11112233457788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--cCchhHHHHHhhhHHHHHhhhhHHHHHHH
Q 039402 970 VYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDA--TPSGRIINRASTDQSAADLGIPSLVGAYA 1047 (1496)
Q Consensus 970 vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~--tp~GrIlnR~s~D~~~vd~~l~~~~~~~~ 1047 (1496)
+|++++++..++.+++.++....+.++++++|.+++++++++|++|||+ +|+|+|+||+++|++.+|..++..+..++
T Consensus 799 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~ 878 (1321)
T 4f4c_A 799 MFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVI 878 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHH
Q 039402 1048 FSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFR 1127 (1496)
Q Consensus 1048 ~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~ 1127 (1496)
..++.+++.++++++.+|++.++++++++++++...++.+..+...+......++...++.|+++|+.|||+|++|++|.
T Consensus 879 ~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~ 958 (1321)
T 4f4c_A 879 TTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFY 958 (1321)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHH
T ss_pred HHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHH
Confidence 99999999999999999999888777777766666555544333333334445666788899999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1128 DRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFL-ISIP--KGFIDPAIAGLAVTYGLTLNTLLATLIWFA 1204 (1496)
Q Consensus 1128 ~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~-~~~~--~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~ 1204 (1496)
+++.+..+.+.+..+.....+.+.......+..+..+++..+. .... ...++++.+..++.+.......+.++...+
T Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1038 (1321)
T 4f4c_A 959 ENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYF 1038 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888776655555444433333333322222221 1222 233455444444444444455667788888
Q ss_pred HHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCC-CccceeeeEEeeCCcEEEEEcCCC
Q 039402 1205 CDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQM-PLVLQGISCTFPGGEKTGIVGRTG 1283 (1496)
Q Consensus 1205 ~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vLk~iS~~I~~GekvgIVGrTG 1283 (1496)
.++++.+.+++|+.++.+.++|.+ +...+++.||..|.|+|+||+|+|+++. .+|||||||+|+||||||||||||
T Consensus 1039 ~~~~~~~~a~~ri~~~l~~~~~~~---~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SG 1115 (1321)
T 4f4c_A 1039 PEYAKATFAGGIIFGMLRKISKID---SLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSG 1115 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSC---TTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTT
T ss_pred HHHHHHHHHHHHHHHHhhCcccCC---CccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCC
Confidence 999999999999999998776643 2344567799999999999999997543 369999999999999999999999
Q ss_pred CCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhcc----CCCCCCcHHHHHHHHHHc
Q 039402 1284 SGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL----DPLEESTDEQIWEALDKC 1359 (1496)
Q Consensus 1284 SGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NL----dp~~~~sd~eI~~aL~~~ 1359 (1496)
||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+|| || ++++|+|||+||++|
T Consensus 1116 sGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~-~~~sd~ei~~Al~~a 1194 (1321)
T 4f4c_A 1116 CGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP-SSVTMAQVEEAARLA 1194 (1321)
T ss_dssp SSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCT-TTSCHHHHHHHHHHT
T ss_pred ChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCC-CCCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999996 44 578999999999999
Q ss_pred CCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcc
Q 039402 1360 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439 (1496)
Q Consensus 1360 ~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAH 1439 (1496)
+++|+|.++|+||||+|||+|.|||||||||+||||||||+|+|||||||||+||++||+.||++|++.+++||||+|||
T Consensus 1195 ~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAH 1274 (1321)
T 4f4c_A 1195 NIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAH 1274 (1321)
T ss_dssp TCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECS
T ss_pred CChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHh
Q 039402 1440 RITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYT 1483 (1496)
Q Consensus 1440 Rl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~ 1483 (1496)
|++||++||||+|||+|+|+|+|+|+||+++ +|.|++|++++.
T Consensus 1275 RLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q~ 1317 (1321)
T 4f4c_A 1275 RLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQM 1317 (1321)
T ss_dssp SSSTTTTCSEEEEESSSSEEEEECHHHHHHC-C-----------
T ss_pred CHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHHH
Confidence 9999999999999999999999999999986 689999998654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-141 Score=1443.43 Aligned_cols=1174 Identities=18% Similarity=0.217 Sum_probs=870.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------C------------cchhHHHHHHHHHHHHHHHHHH
Q 039402 298 SVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRR-------D------------FENEGYVLVSAFCVAKLVECLC 358 (1496)
Q Consensus 298 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~-------~------------~~~~g~~l~~~l~~~~~~~~l~ 358 (1496)
.+|..++++.++.++..++..+.|++++.+++.+.... . .......++..++...++..++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1284)
T 3g5u_A 45 LDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIV 124 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777778888888888877653110 0 0011122333444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Q 039402 359 QRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILY 437 (1496)
Q Consensus 359 ~~~~~~~~~~~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~ 437 (1496)
.....+...+.+.++...++..+|+|.++++...++++++|+++|++++|++.+.+++. .+..+...++.++.++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (1284)
T 3g5u_A 125 AYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGF 204 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667788889999999999999999999999999999999999999999998754 34444555555555555554
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Q 039402 438 KNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWL 517 (1496)
Q Consensus 438 ~~lg~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l 517 (1496)
..-...+++.+++++++..+..++.+...+..++.++..++..+...|.++||++||.|++|+.+.+++.+..++-.+..
T Consensus 205 ~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~ 284 (1284)
T 3g5u_A 205 TRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLG 284 (1284)
T ss_dssp HTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 43333445555555666666777788888888888999999999999999999999999999988888766554433333
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039402 518 KKYVYTSAISSFVFW--GAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASF 595 (1496)
Q Consensus 518 ~~~~~~~~~~~~~~~--~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~f 595 (1496)
.+..........+.. .....+.+++++.+.+..+.+++|.+++++.++.....|+..+...+..+.++.++.+|+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 364 (1284)
T 3g5u_A 285 IKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKI 364 (1284)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222222222211 112234455677777888899999999888777788889999999999999999999999999
Q ss_pred hcCCCCCCc-cccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCc
Q 039402 596 FCLDDLQPD-LVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 674 (1496)
Q Consensus 596 L~~~e~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~ 674 (1496)
++.++..++ .....+.......++++|++|+|+..++.++|+|+||+|++||+++||||||||||||+++|+|+++|++
T Consensus 365 l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~ 444 (1284)
T 3g5u_A 365 IDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444 (1284)
T ss_dssp TSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSE
T ss_pred HcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 976543221 1111111123457999999999975445689999999999999999999999999999999999999999
Q ss_pred cEEEEcCe-------------eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCC
Q 039402 675 GTLKLCGT-------------KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERG 740 (1496)
Q Consensus 675 G~i~~~g~-------------~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g 740 (1496)
|+|.++|. +|||+|+||+|++||+|||.+|.+ .+++++.++++.++++++++.+|+|++|.+|++|
T Consensus 445 G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 524 (1284)
T 3g5u_A 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERG 524 (1284)
T ss_dssp EEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSS
T ss_pred eEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCC
Confidence 99999994 799999999999999999999875 6788899999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEE
Q 039402 741 INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKIT 820 (1496)
Q Consensus 741 ~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 820 (1496)
.+|||||||||+||||++++|+|+|||||||+||+++++.+ .++++...+|+|+|+||||++.+..||+|++|++|+|+
T Consensus 525 ~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~ 603 (1284)
T 3g5u_A 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVV-QAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIV 603 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHH-HHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCC
T ss_pred CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999997766 45667777899999999999999999999999999999
Q ss_pred EecChHHHHhcCcchHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccchhH
Q 039402 821 QAGKYNDLINSGTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQ 900 (1496)
Q Consensus 821 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 900 (1496)
+.|+++|+++.++.|.++...+..........+.............................. ..............
T Consensus 604 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 680 (1284)
T 3g5u_A 604 EQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRK---SICGPHDQDRKLST 680 (1284)
T ss_dssp CEECHHHHHHTTSHHHHHHHHTC---------------------------------------------------------
T ss_pred EECCHHHHHhCCCHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccc---ccccccccccccch
Confidence 999999999988888877654322110000000000000000000000000000000000000 00000000001111
Q ss_pred HHHHh--hccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh----hhHHHhhcCCCCCCCCcccchHHHHHHHHH
Q 039402 901 EEERE--KGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIAS----NYWIVWATPGTKDVKPVVTGSTLLIVYVAL 974 (1496)
Q Consensus 901 ~e~~~--~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l 974 (1496)
+++.+ ....++..+++|.+.......+ .+++.++..++.... ..|+..+...............+..+|+++
T Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 758 (1284)
T 3g5u_A 681 KEALDEDVPPASFWRILKLNSTEWPYFVV--GIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLIL 758 (1284)
T ss_dssp ---CCCCCSCCCTTHHHHHHHHTCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchHHHHHHHHhcchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHH
Confidence 11111 1223344455555443322222 222222222222222 333333332110000111234567788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc--ccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHH
Q 039402 975 AVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFD--ATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIR 1052 (1496)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd--~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~ 1052 (1496)
+++..++.+++.++....+.+.+.++|.+++++++++|++||| .+|+|+++||+++|++.+|..++..+..++..++.
T Consensus 759 ~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~ 838 (1284)
T 3g5u_A 759 GIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIAN 838 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHH
Q 039402 1053 ILGTIAVMSQVAWQVFIVFV---PAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDR 1129 (1496)
Q Consensus 1053 ~l~~~~~~~~~~~~~~~~~i---p~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~ 1129 (1496)
+++.+++++.++|.+.++++ |+++++.++...+.. ...+......+....++.|+++|+.|||+|++++++.++
T Consensus 839 ~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~ 915 (1284)
T 3g5u_A 839 LGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLS---GQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETM 915 (1284)
T ss_dssp HHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 98888888888887655444 444444333333322 222222233344556889999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1130 NMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFA---FTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFAC 1205 (1496)
Q Consensus 1130 ~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~---~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~ 1205 (1496)
+.+..+...+..... ..|.+....+...+... .+..+ ......+.++.+.+..++.+.......+..+...+.
T Consensus 916 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 992 (1284)
T 3g5u_A 916 YAQSLQIPYRNAMKK---AHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAP 992 (1284)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888766554433 23334333333332222 11111 122345667777666666666666666666666666
Q ss_pred HHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCC-CCccceeeeEEeeCCcEEEEEcCCCC
Q 039402 1206 DLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTGS 1284 (1496)
Q Consensus 1206 ~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~iS~~I~~GekvgIVGrTGS 1284 (1496)
+++....+++|+.++.+.+++.+... ..+.+.||..|.|+|+||+++|+.. ..++|+|+||+|++||++||||||||
T Consensus 993 ~~~~~~~a~~ri~~~l~~~~~~~~~~--~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGs 1070 (1284)
T 3g5u_A 993 DYAKATVSASHIIRIIEKTPEIDSYS--TQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGC 1070 (1284)
T ss_dssp CSTHHHHHHHHHHHHHHSCCSSSSCC--SSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSST
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccc--cccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCC
Confidence 77888999999999998766543211 1122335668999999999999753 24699999999999999999999999
Q ss_pred CHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCC---CCCcHHHHHHHHHHcCC
Q 039402 1285 GKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL---EESTDEQIWEALDKCQL 1361 (1496)
Q Consensus 1285 GKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~sd~eI~~aL~~~~L 1361 (1496)
|||||+++|+|+++|++|+|.|||+|+++++++++|++|++|||||.+|++|||+||.+. ...++++++++++++++
T Consensus 1071 GKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~ 1150 (1284)
T 3g5u_A 1071 GKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANI 1150 (1284)
T ss_dssp THHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999999999754 35789999999999999
Q ss_pred cHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCc
Q 039402 1362 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRI 1441 (1496)
Q Consensus 1362 ~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl 1441 (1496)
++++.++|+||||.|+|+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++|||+||||+
T Consensus 1151 ~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l 1230 (1284)
T 3g5u_A 1151 HQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRL 1230 (1284)
T ss_dssp HHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCT
T ss_pred HHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred chhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHhhcc
Q 039402 1442 TSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRS 1486 (1496)
Q Consensus 1442 ~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~~~~ 1486 (1496)
+++.+||||+||++|+|+|+|+|++|+++ +|.|++|++......
T Consensus 1231 ~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~g~y~~l~~~q~~~~ 1274 (1284)
T 3g5u_A 1231 STIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQAGAK 1274 (1284)
T ss_dssp TGGGSCSEEEEEETBEEEEEECHHHHHHS-CSHHHHHHHHHC---
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHHhhcc
Confidence 99999999999999999999999999975 699999998765433
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-79 Score=838.00 Aligned_cols=515 Identities=20% Similarity=0.256 Sum_probs=460.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHH
Q 039402 966 TLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGA 1045 (1496)
Q Consensus 966 ~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~ 1045 (1496)
.+...|++++++..++.+++.+++.+.+.+...+++.++++++++.|++|||++++|+++||+++|++.++..+...+..
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~ 216 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGM 216 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHH
Q 039402 1046 YAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESR 1125 (1496)
Q Consensus 1046 ~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~ 1125 (1496)
++..++.+++.++++++.+|.+.++++.+++++.++..++.+..+...+......+...+++.|+++|+++||+|++|++
T Consensus 217 ~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 296 (1321)
T 4f4c_A 217 AFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRY 296 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHH
Confidence 99999999999999999999998887777777777777777777777777788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1126 FRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFA 1204 (1496)
Q Consensus 1126 f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~ 1204 (1496)
+.+++.+..+...+..........+......++..+.++++.++ ......|.+++|.+..++.|...+...+..+...+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~ 376 (1321)
T 4f4c_A 297 ELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQL 376 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888887776665555555545555544444333333 23456788999999999999999999999999999
Q ss_pred HHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCC-CCccceeeeEEeeCCcEEEEEcCCC
Q 039402 1205 CDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTG 1283 (1496)
Q Consensus 1205 ~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~iS~~I~~GekvgIVGrTG 1283 (1496)
..+.....|++|+.++++.+++.+.. ....+...+..|.|+|+||+|+|+.. ..++|+|+||+|+|||++||||+||
T Consensus 377 ~~~~~~~~s~~ri~~~l~~~~~~~~~--~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sG 454 (1321)
T 4f4c_A 377 AVLGTAQGAASGIYEVLDRKPVIDSS--SKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSG 454 (1321)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCSSCS--SSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHcCCcccccc--ccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCC
Confidence 99999999999999999876653321 12223344668999999999999743 3579999999999999999999999
Q ss_pred CCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC-CCcHHHHHHHHHHcCCc
Q 039402 1284 SGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLG 1362 (1496)
Q Consensus 1284 SGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~ 1362 (1496)
||||||+++|+|+|+|++|+|.|||+||+++++++||++|+||||||.||+|||||||.... +++|+++++|++.|+++
T Consensus 455 sGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~ 534 (1321)
T 4f4c_A 455 CGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAE 534 (1321)
T ss_dssp SCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccch
Confidence 99999999999999999999999999999999999999999999999999999999998654 58999999999999999
Q ss_pred HHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcc
Q 039402 1363 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRIT 1442 (1496)
Q Consensus 1363 ~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ 1442 (1496)
++|.++|+|+||.|||+|.+||||||||+|||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++
T Consensus 535 ~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls 614 (1321)
T 4f4c_A 535 KFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLS 614 (1321)
T ss_dssp HHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTT
T ss_pred hHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHh
Q 039402 1443 SVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYT 1483 (1496)
Q Consensus 1443 ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~ 1483 (1496)
|+.+||+|+||++|+|+|+|+|+||+++ +|.|++|++...
T Consensus 615 ~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 615 TIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp TTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhh
Confidence 9999999999999999999999999975 799999997653
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-78 Score=770.85 Aligned_cols=571 Identities=19% Similarity=0.263 Sum_probs=474.1
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 039402 907 GKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARS 986 (1496)
Q Consensus 907 g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~ 986 (1496)
|..+++.+++|++...+ .+.+.+++.++..++.++.++++.++.+.............+..+++++.++..++.+++.
T Consensus 7 g~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (587)
T 3qf4_A 7 GGGGSKTLARYLKPYWI--FAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCT 84 (587)
T ss_dssp -CCCCCCGGGGTGGGHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555554322 2223344556667778888888887654211111111112334455566677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 039402 987 TLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQ 1066 (1496)
Q Consensus 987 ~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1066 (1496)
++....+.+...+++.++++++++.|+.||+++++|+++||+++|++.++..+...+..++...+.+++.+++++.++|.
T Consensus 85 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 164 (587)
T 3qf4_A 85 VFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVK 164 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888888888888888899999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHH
Q 039402 1067 VFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAA 1146 (1496)
Q Consensus 1067 ~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~ 1146 (1496)
+.++++.+++++..+..++.+..+...+......+.+.+++.|+++|+.+||+|++|+.+.+++.+..+...+.......
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (587)
T 3qf4_A 165 LSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFS 244 (587)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777666666666666666666777777777888999999999999999999999999999999888887776665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCC
Q 039402 1147 AMEWLGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPS 1225 (1496)
Q Consensus 1147 ~~~wl~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~ 1225 (1496)
...+......++..+..++++++ ......|.+++|.+..++.|...+...+..+...+..+.+...|.+|+.++++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 324 (587)
T 3qf4_A 245 LIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKP 324 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44444433444433333322222 23345788999999999999999999999999999999999999999999998765
Q ss_pred CCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEE
Q 039402 1226 EPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305 (1496)
Q Consensus 1226 E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ 1305 (1496)
+.+. ...+.+.++..|.|+++||+++|+++.+++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.
T Consensus 325 ~~~~---~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~ 401 (587)
T 3qf4_A 325 AIEE---ADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE 401 (587)
T ss_dssp SCCC---CTTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE
T ss_pred ccCC---CCCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Confidence 5321 1112222355789999999999987667899999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCC
Q 039402 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWS 1384 (1496)
Q Consensus 1306 IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1384 (1496)
+||+|+++++.+++|++|++|||||.+|++||||||.... +.++++++++++.+++++++.++|+|+||.++|+|.+||
T Consensus 402 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LS 481 (587)
T 3qf4_A 402 VDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFS 481 (587)
T ss_dssp ESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSC
T ss_pred ECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcC
Confidence 9999999999999999999999999999999999998653 688999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecCh
Q 039402 1385 MGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNP 1464 (1496)
Q Consensus 1385 ~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p 1464 (1496)
||||||+|||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++..||||+||++|+|+|.|+|
T Consensus 482 gGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~ 561 (587)
T 3qf4_A 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTH 561 (587)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hhHhhcCCcHHHHHHHHHh
Q 039402 1465 ANLLENKSSSFSQLVAEYT 1483 (1496)
Q Consensus 1465 ~~Ll~~~~s~F~~l~~~~~ 1483 (1496)
+||+++ ++.|+++++++.
T Consensus 562 ~el~~~-~~~~~~~~~~~~ 579 (587)
T 3qf4_A 562 KELLEH-CKPYREIYESQF 579 (587)
T ss_dssp HHHHHH-CHHHHHHHHHHC
T ss_pred HHHHhC-CcHHHHHHHHHh
Confidence 999975 588999987653
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-79 Score=776.90 Aligned_cols=549 Identities=25% Similarity=0.330 Sum_probs=481.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 929 FILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCI 1008 (1496)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~l 1008 (1496)
+.+++.++..++.++.++++.+..+.............++.+++++.++..++.+++.++....+.+...+++.++++++
T Consensus 41 ~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 120 (598)
T 3qf4_B 41 MVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKL 120 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677778888887765432111111112334567777788888899999999999999999999999999999
Q ss_pred hcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1009 FRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISS 1088 (1496)
Q Consensus 1009 l~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~ 1088 (1496)
++.|++||+++++|+++||+++|++.++..++..+..++..++.+++.+++++..+|++.++++.++++++++..++.+.
T Consensus 121 l~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~ 200 (598)
T 3qf4_B 121 QRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQ 200 (598)
T ss_dssp HHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988887777778888888888
Q ss_pred HHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1089 ARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLV 1168 (1496)
Q Consensus 1089 ~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~ 1168 (1496)
.++..+......+.+.+++.|+++|+.+||+|++|+++.+++.+..+...+..........|.....+++..+..+++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (598)
T 3qf4_B 201 TRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISG 280 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999999999888888777766666666666666665554443333
Q ss_pred H-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEE
Q 039402 1169 F-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKID 1247 (1496)
Q Consensus 1169 ~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~ 1247 (1496)
+ ......|.+++|.+..+++|...+...+..+...+..++..+.|++|+.++++.|+|.+. ..+.+.||..|.|+
T Consensus 281 ~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~----~~~~~~~~~~~~i~ 356 (598)
T 3qf4_B 281 FGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD----PDAVELREVRGEIE 356 (598)
T ss_dssp HHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC----SSCCCCCSCCCCEE
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CCCCCCCCCCCeEE
Confidence 3 234457889999999999999999999999999999999999999999999988776431 12233456778999
Q ss_pred EEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEc
Q 039402 1248 LLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIP 1327 (1496)
Q Consensus 1248 f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIp 1327 (1496)
++||+++|+++ +++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||+|+++++.+++|+++++||
T Consensus 357 ~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~ 435 (598)
T 3qf4_B 357 FKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVL 435 (598)
T ss_dssp EEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEe
Confidence 99999999754 45999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEE
Q 039402 1328 QDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILML 1406 (1496)
Q Consensus 1328 Qdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiL 1406 (1496)
|||.+|++|||||+.... ..++++++++++.+++++++.++|+|+||.++|+|.+||||||||+|||||++++|+||||
T Consensus 436 Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illl 515 (598)
T 3qf4_B 436 QDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILIL 515 (598)
T ss_dssp TTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred CCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999998653 5788999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHh
Q 039402 1407 DEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYT 1483 (1496)
Q Consensus 1407 DEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~ 1483 (1496)
|||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|+||+++ ++.|++++.+..
T Consensus 516 DEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 591 (598)
T 3qf4_B 516 DEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQY 591 (598)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT-TCHHHHHHHHHH
T ss_pred ECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHHh
Confidence 9999999999999999999998889999999999999999999999999999999999999975 689999987654
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-76 Score=746.42 Aligned_cols=562 Identities=22% Similarity=0.306 Sum_probs=483.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 039402 912 SVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLL-IVYVALAVGSSFCVLARSTLLA 990 (1496)
Q Consensus 912 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l-~vy~~l~~~~~~~~~~~~~~~~ 990 (1496)
+.+++|++...+.. .+.+++.++..++..+.++++.++.+..... .......++ .+++++.++..++.+++.++..
T Consensus 14 ~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (582)
T 3b5x_A 14 KRLWTYIRLYKAGL--VVSTIALVINAAADTYMISLLKPLLDEGFGN-AESNFLRILPFMILGLMFVRGLSGFASSYCLS 90 (582)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555433222 2233444556667777777777655321110 111112222 3356667777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039402 991 TAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIV 1070 (1496)
Q Consensus 991 ~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1070 (1496)
..+.+....++.++++++++.|++||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|++.++
T Consensus 91 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 170 (582)
T 3b5x_A 91 WVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLV 170 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039402 1071 FVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEW 1150 (1496)
Q Consensus 1071 ~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~w 1150 (1496)
++.++++++++..++.+..++..+......+...+++.|+++|+.+||+|+.|+++.+++.+..+...+..........|
T Consensus 171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3b5x_A 171 LIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSI 250 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777778888888888889999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCC
Q 039402 1151 LGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPL 1229 (1496)
Q Consensus 1151 l~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1229 (1496)
.....+++..+..++++++ ......|.+++|.+..++.|...+...+..+...+.+++....+++|+.++++.|+|.+.
T Consensus 251 ~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 330 (582)
T 3b5x_A 251 ADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN 330 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Confidence 8888887776655444333 233457889999999999999999999999999999999999999999999987665321
Q ss_pred CccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCe
Q 039402 1230 AIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309 (1496)
Q Consensus 1230 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~ 1309 (1496)
. +.+.++..|.|+++||+++|+++.+++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||.
T Consensus 331 ---~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 405 (582)
T 3b5x_A 331 ---G--KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGH 405 (582)
T ss_pred ---C--CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCE
Confidence 1 11223456889999999999754356999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhcccEEEcccccccccchhhccCCCC--CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1310 DISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE--ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1310 dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~--~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
|+++++.+++|+++++|||||.+|++|||||+.... +.++++++++++++++++++.++|+|+||.++|+|.+|||||
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq 485 (582)
T 3b5x_A 406 DVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485 (582)
T ss_pred EhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence 999999999999999999999999999999998653 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhH
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
|||++||||++++|+||+||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|++|
T Consensus 486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b5x_A 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADL 565 (582)
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHH
Q 039402 1468 LENKSSSFSQLVAEY 1482 (1496)
Q Consensus 1468 l~~~~s~F~~l~~~~ 1482 (1496)
+++ ++.|+++++..
T Consensus 566 ~~~-~~~~~~~~~~q 579 (582)
T 3b5x_A 566 LAQ-DGAYAQLHRIQ 579 (582)
T ss_pred HhC-CcHHHHHHHHh
Confidence 975 68999998764
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-76 Score=748.79 Aligned_cols=562 Identities=21% Similarity=0.261 Sum_probs=483.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 912 SVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGST-LLIVYVALAVGSSFCVLARSTLLA 990 (1496)
Q Consensus 912 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~-~l~vy~~l~~~~~~~~~~~~~~~~ 990 (1496)
+.+++|++...+ .+.+.+++.++..++..+.++++.++.+..... ....... +..+++++.++..++.+++.++..
T Consensus 14 ~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (582)
T 3b60_A 14 RRLWPTIAPFKA--GLIVAGIALILNAASDTFMLSLLKPLLDDGFGK-TDRSVLLWMPLVVIGLMILRGITSYISSYCIS 90 (582)
T ss_dssp HHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTS-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544322 222333444566677777788877665432111 1111111 223356667777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039402 991 TAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIV 1070 (1496)
Q Consensus 991 ~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1070 (1496)
..+.+....++.++++++++.|++||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|++.++
T Consensus 91 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 170 (582)
T 3b60_A 91 WVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSII 170 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039402 1071 FVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEW 1150 (1496)
Q Consensus 1071 ~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~w 1150 (1496)
++..+++++++..++.+..++..+......++..+++.|+++|+.+||+|+.++++.+++.+..+...+..........|
T Consensus 171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3b60_A 171 LVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSI 250 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777778888888888889999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCC
Q 039402 1151 LGLRLDMLSSITFAFTLVFL-ISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPL 1229 (1496)
Q Consensus 1151 l~~rl~~l~~~~~~~~~~~~-~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1229 (1496)
.....+++..+..++++++. .....|.+++|.+..++.|...+...+..+...+.+++....+++|+.++++.|+|.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 330 (582)
T 3b60_A 251 SDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE 330 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 88888887776555444332 33456889999999999999999999999999999999999999999999987765421
Q ss_pred CccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCe
Q 039402 1230 AIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309 (1496)
Q Consensus 1230 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~ 1309 (1496)
.+.+.+|..|.|+++||+++|+++.+++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||.
T Consensus 331 -----~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~ 405 (582)
T 3b60_A 331 -----GKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGH 405 (582)
T ss_dssp -----CCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTE
T ss_pred -----CCCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCE
Confidence 111223456889999999999754356999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhcccEEEcccccccccchhhccCCCC--CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1310 DISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE--ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1310 dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~--~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
|+++++.+++|+++++|||||.+|++|||||+.... +.++++++++++++++++++.++|+|+||.++|+|.+|||||
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq 485 (582)
T 3b60_A 406 DLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485 (582)
T ss_dssp ETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred EccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence 999999999999999999999999999999998643 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhH
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
|||++||||++++|+||+||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|++|
T Consensus 486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b60_A 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSEL 565 (582)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHH
Q 039402 1468 LENKSSSFSQLVAEY 1482 (1496)
Q Consensus 1468 l~~~~s~F~~l~~~~ 1482 (1496)
+++ ++.|+++++..
T Consensus 566 ~~~-~~~~~~~~~~q 579 (582)
T 3b60_A 566 LAQ-HGVYAQLHKMQ 579 (582)
T ss_dssp HHH-TSSHHHHHHHT
T ss_pred HHc-CCHHHHHHHHh
Confidence 975 67899998753
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-76 Score=749.29 Aligned_cols=508 Identities=22% Similarity=0.271 Sum_probs=445.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHH
Q 039402 969 IVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAF 1048 (1496)
Q Consensus 969 ~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~ 1048 (1496)
.+++++.++..++.+++.++....+.+...+++.++++++++.|++||+++++|+++||+++|++.++..+...+..++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~ 144 (578)
T 4a82_A 65 IALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWL 144 (578)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667788888899999999999999999999999999999999999999999999999999888777777788
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHH
Q 039402 1049 SIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRD 1128 (1496)
Q Consensus 1049 ~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~ 1128 (1496)
..+.+++.+++++..+|++.++.+..+++++.+..++.+..++..+......++..+++.|+++|+.+||+|++|+.+.+
T Consensus 145 ~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 224 (578)
T 4a82_A 145 DCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAK 224 (578)
T ss_dssp HHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHH
Confidence 88888888889999999988887777777777777777888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1129 RNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDL 1207 (1496)
Q Consensus 1129 ~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~l 1207 (1496)
++.+..+...+..........+.....+.+..+..+++..+ ......|.+++|.+..+++|...+...+..+...+..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~ 304 (578)
T 4a82_A 225 NFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTL 304 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887777666555544444444444443332222222 22334678999999999999999999999999999999
Q ss_pred HHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHH
Q 039402 1208 ENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKS 1287 (1496)
Q Consensus 1208 e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKS 1287 (1496)
++...|++|+.++++.++|.+. ...+.+.++..|.|+++||+++|+++.+++|+|+||+|++||++|||||||||||
T Consensus 305 ~~~~~s~~ri~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKS 381 (578)
T 4a82_A 305 TQSFASMDRVFQLIDEDYDIKN---GVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKS 381 (578)
T ss_dssp HHHHHHHHHHHHHHTCCCSSCC---CTTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHH
T ss_pred HHHHHHHHHHHHHHcCCCcccC---CCCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHH
Confidence 9999999999999987765431 1122233456789999999999987666799999999999999999999999999
Q ss_pred HHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHH
Q 039402 1288 TLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVR 1366 (1496)
Q Consensus 1288 TLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~ 1366 (1496)
||+++|.|+++|++|+|.+||.|+++++.+++|+++++|||||.+|++|||||+... .+.++++++++++.+++++++.
T Consensus 382 Tll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
T 4a82_A 382 TLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIM 461 (578)
T ss_dssp HHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999999753 4678999999999999999999
Q ss_pred hccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc
Q 039402 1367 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID 1446 (1496)
Q Consensus 1367 ~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~ 1446 (1496)
++|+|+||.++|+|.+||||||||++||||++++|+||+||||||+||+++++.|++.|++..+++|+|+||||++++..
T Consensus 462 ~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~ 541 (578)
T 4a82_A 462 NLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH 541 (578)
T ss_dssp TSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT
T ss_pred hCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred cCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHH
Q 039402 1447 SDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVA 1480 (1496)
Q Consensus 1447 ~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~ 1480 (1496)
||||+||++|+|+|.|+|+||+++ ++.|+++++
T Consensus 542 ~d~i~~l~~G~i~~~g~~~el~~~-~~~~~~~~~ 574 (578)
T 4a82_A 542 ADKIVVIENGHIVETGTHRELIAK-QGAYEHLYS 574 (578)
T ss_dssp CSEEEEEETTEEEEEECHHHHHHT-TSHHHHHHT
T ss_pred CCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 999999999999999999999975 688988875
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-76 Score=807.59 Aligned_cols=514 Identities=20% Similarity=0.267 Sum_probs=450.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHH
Q 039402 966 TLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGA 1045 (1496)
Q Consensus 966 ~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~ 1045 (1496)
.+.++|++++++..++.+++.++....+.+...++|.+++++++++|++|||++++|+++||+++|++.++..++..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~ 188 (1284)
T 3g5u_A 109 TYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGM 188 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHH
Q 039402 1046 YAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESR 1125 (1496)
Q Consensus 1046 ~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~ 1125 (1496)
++..++.+++.++++++.+|++.+++++++++++++..++.+..+...+......++..+++.|+++|+.|||+|++|++
T Consensus 189 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~ 268 (1284)
T 3g5u_A 189 FFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHH
Confidence 99999999999999999999999888888888888888888888888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1126 FRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFA 1204 (1496)
Q Consensus 1126 f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~ 1204 (1496)
+.+++.+..+.+.+..........+......++..+..+++.++ ......|.+++|.+..++.+.+.....+..+...+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 348 (1284)
T 3g5u_A 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNI 348 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888877665544433333333333333322222222 12233566777777666666667777788888889
Q ss_pred HHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCC-CCccceeeeEEeeCCcEEEEEcCCC
Q 039402 1205 CDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTG 1283 (1496)
Q Consensus 1205 ~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~iS~~I~~GekvgIVGrTG 1283 (1496)
..+++...+++|+.++++.+++.+...+...++ .+..|.|+|+||+|+|+++ .+++|+||||+|+|||++|||||||
T Consensus 349 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~--~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sG 426 (1284)
T 3g5u_A 349 EAFANARGAAYEVFKIIDNKPSIDSFSKSGHKP--DNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSG 426 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCC--TTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcccccCCCC--CCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCC
Confidence 999999999999999998765532211111122 2447899999999999754 3479999999999999999999999
Q ss_pred CCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCc
Q 039402 1284 SGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLG 1362 (1496)
Q Consensus 1284 SGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~ 1362 (1496)
||||||+++|+|+++|++|+|.+||+|+++++++++|++|++|||||.||++||||||.+. .+.++++++++++.++++
T Consensus 427 sGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~ 506 (1284)
T 3g5u_A 427 CGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAY 506 (1284)
T ss_dssp SSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcH
Confidence 9999999999999999999999999999999999999999999999999999999999854 468899999999999999
Q ss_pred HHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcc
Q 039402 1363 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRIT 1442 (1496)
Q Consensus 1363 ~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ 1442 (1496)
+++.++|+|+||.++|+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++
T Consensus 507 ~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 586 (1284)
T 3g5u_A 507 DFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS 586 (1284)
T ss_dssp HHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred HHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred hhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHH
Q 039402 1443 SVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEY 1482 (1496)
Q Consensus 1443 ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~ 1482 (1496)
++.+||+|+||++|+|+|.|+|++|+++ ++.|++++...
T Consensus 587 ~i~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 625 (1284)
T 3g5u_A 587 TVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQ 625 (1284)
T ss_dssp HHTTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHT
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHh
Confidence 9999999999999999999999999975 68899888653
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-71 Score=705.62 Aligned_cols=547 Identities=22% Similarity=0.254 Sum_probs=464.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--chh----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 292 IKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDF--ENE----GYVLVSAFCVAKLVECLCQRFRVFR 365 (1496)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~--~~~----g~~l~~~l~~~~~~~~l~~~~~~~~ 365 (1496)
++.+++.+++.++...++.++..++..+.|++++.++|.+...... ... .+.+++++++..++..++.....+.
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (578)
T 4a82_A 5 YLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYL 84 (578)
T ss_dssp HHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888899999999999999999999999999987643321 111 1344455566666777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 039402 366 LQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGIAS 444 (1496)
Q Consensus 366 ~~~~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~~~ 444 (1496)
..+++.++...++..+|+|.++++...++++++|+++|++++|++++.+++. .++.+|..++.+++++++++...+..+
T Consensus 85 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 164 (578)
T 4a82_A 85 AQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLT 164 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 8999999999999999999999999999999999999999999999999764 467889999988888888877766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 445 LAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTS 524 (1496)
Q Consensus 445 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~ 524 (1496)
+++++++++++++...+.+...+..++.++..+++.+.+.|.++|+++||.|+||+.+.+++.+.++++.+...+.....
T Consensus 165 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (578)
T 4a82_A 165 LAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWN 244 (578)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777888899999999999999999999999999999999999999999999888777766665555544
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 039402 525 AISSFVFWGAPT--FVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQ 602 (1496)
Q Consensus 525 ~~~~~~~~~~p~--~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~ 602 (1496)
.....+...... .+.++.++++.+.++.+++|.+++++.++..+..|+..++..+..+.++.+|++|+.++++.++..
T Consensus 245 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 324 (578)
T 4a82_A 245 AYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDI 324 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 443333222222 234456777888888999999999999999999999999999999999999999999999876543
Q ss_pred CccccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe
Q 039402 603 PDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 682 (1496)
Q Consensus 603 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~ 682 (1496)
++.....+.......++++|++|+|+. +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 325 ~~~~~~~~~~~~~~~i~~~~v~~~y~~-~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 403 (578)
T 4a82_A 325 KNGVGAQPIEIKQGRIDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGH 403 (578)
T ss_dssp CCCTTCCCCCCCSCCEEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTE
T ss_pred cCCCCccccCCCCCeEEEEEEEEEcCC-CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCE
Confidence 221111111223457999999999964 3468999999999999999999999999999999999999999999999993
Q ss_pred -------------eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 -------------KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 -------------~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++||||+|++|++||+|||.+|.+ .++++..++++.++++++++.+|.|++|.+|++|.+||||||
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~ 483 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK 483 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHH
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHH
Confidence 799999999999999999999875 567788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l 828 (1496)
|||+||||++++|+++||||||||||+++++.+. ++++...+++|+|+||||++.+..||+|++|++|++++.|+++|+
T Consensus 484 Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el 562 (578)
T 4a82_A 484 QRLSIARIFLNNPPILILDEATSALDLESESIIQ-EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHREL 562 (578)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHH-HHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999988775 566667789999999999999989999999999999999999999
Q ss_pred HhcCcchHHHHH
Q 039402 829 INSGTDFMELVG 840 (1496)
Q Consensus 829 ~~~~~~~~~~~~ 840 (1496)
++.++.|.++..
T Consensus 563 ~~~~~~~~~~~~ 574 (578)
T 4a82_A 563 IAKQGAYEHLYS 574 (578)
T ss_dssp HHTTSHHHHHHT
T ss_pred HhCCcHHHHHHH
Confidence 988877777653
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-70 Score=693.37 Aligned_cols=548 Identities=18% Similarity=0.212 Sum_probs=447.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 291 LIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLG 370 (1496)
Q Consensus 291 l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~ 370 (1496)
.++.+++.+|+.++...++.++..++..+.|++++.++|....... ....+.+++.+++..++..++.....+...+.+
T Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (587)
T 3qf4_A 13 TLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD-FSLVLKTGILMLIVALIGAVGGIGCTVFASYAS 91 (587)
T ss_dssp CGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678889999999999999999999999999999998654322 222223333344444455555555566667788
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039402 371 IRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWY-IHDPWLVLFEVALSILILYKNLGIASLAALF 449 (1496)
Q Consensus 371 ~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~ 449 (1496)
.++...++..+|+|.++++....+++++|+++|++++|++++.+++.. +..++..++.++.++++++......+++.++
T Consensus 92 ~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~ 171 (587)
T 3qf4_A 92 QNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIF 171 (587)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999999999999999999999999999997654 4455666777777766665554444555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 450 GTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSF 529 (1496)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~ 529 (1496)
+++++.++..++.+...+..++.++..+++.+.+.|.++|+++||.|+||+.+.+++.+..++..+...+..........
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (587)
T 3qf4_A 172 LIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALP 251 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777888888899999999999999999999999999999999987777765544333332222222222111
Q ss_pred H--HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 039402 530 V--FWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVE 607 (1496)
Q Consensus 530 ~--~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~ 607 (1496)
+ +......+.++.++.+.+.++.+++|.+++++.++..+..|+..++..+..+.++.+|++|+.++++.++..++...
T Consensus 252 ~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~ 331 (587)
T 3qf4_A 252 LFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADN 331 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 1 22233445566778888889999999999999999999999999999999999999999999999986543322111
Q ss_pred CCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----
Q 039402 608 KQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----- 682 (1496)
Q Consensus 608 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~----- 682 (1496)
..+.......++++|++|+|+. +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 332 ~~~~~~~~~~i~~~~v~~~y~~-~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~ 410 (587)
T 3qf4_A 332 ALALPNVEGSVSFENVEFRYFE-NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV 410 (587)
T ss_dssp CBCCSCCCCCEEEEEEEECSSS-SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGB
T ss_pred ccccCCCCCcEEEEEEEEEcCC-CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccC
Confidence 1111123457999999999963 3468999999999999999999999999999999999999999999999983
Q ss_pred --------eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 --------KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 --------~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
++||||+|++|++||+|||.+|.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+|||||||||+|
T Consensus 411 ~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~l 490 (587)
T 3qf4_A 411 KLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490 (587)
T ss_dssp CHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHH
T ss_pred CHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHH
Confidence 699999999999999999999975 67788889999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCc
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGT 833 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~ 833 (1496)
|||++++|+|+|||||||+||+++++++.+ .++...+|+|+|+||||++.+..||+|++|++|+|++.|+++|+++.++
T Consensus 491 ARal~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~ 569 (587)
T 3qf4_A 491 ARALVKKPKVLILDDCTSSVDPITEKRILD-GLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCK 569 (587)
T ss_dssp HHHHHTCCSEEEEESCCTTSCHHHHHHHHH-HHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 999999999999999999999999999976 4566677999999999999998999999999999999999999998887
Q ss_pred chHHHHHH
Q 039402 834 DFMELVGA 841 (1496)
Q Consensus 834 ~~~~~~~~ 841 (1496)
.|.++...
T Consensus 570 ~~~~~~~~ 577 (587)
T 3qf4_A 570 PYREIYES 577 (587)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 78777653
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-70 Score=695.00 Aligned_cols=543 Identities=20% Similarity=0.259 Sum_probs=463.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 295 MFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRMR 374 (1496)
Q Consensus 295 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~ir 374 (1496)
+++.+++.++...++.++..++..+.|++++.+++.+...... ...+.+++++++..++..++.....+...+++.++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (598)
T 3qf4_B 31 YLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF-DLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVV 109 (598)
T ss_dssp GTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777888888999999999999999999999987643322 222333444555556677777777778888999999
Q ss_pred HHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039402 375 AALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFS-WYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVI 453 (1496)
Q Consensus 375 ~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~~~~ 453 (1496)
..++..+|+|.++++...++++++|+++|++++|++++.+++ ..++.+|..++.+++++++++...+..+++.++++++
T Consensus 110 ~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l 189 (598)
T 3qf4_B 110 FRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPL 189 (598)
T ss_dssp HHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999976 4678888889988888888887777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 454 VMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWG 533 (1496)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~ 533 (1496)
++++...+.+..++..++..+..+++.+.+.|.++|+++||.|+||+.+.+++.+.+++..+...+..........+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (598)
T 3qf4_B 190 TVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNM 269 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888899999999999999999999999999999999999999999999988888777666655544433333222
Q ss_pred HH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCC
Q 039402 534 AP--TFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPS 611 (1496)
Q Consensus 534 ~p--~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~ 611 (1496)
.. ..+.+++++++.+.++.+++|.+++++.++..+..|+..++..+..+.++.+|++|+.++++.++..+... ..+.
T Consensus 270 ~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~-~~~~ 348 (598)
T 3qf4_B 270 VNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPD-AVEL 348 (598)
T ss_dssp HHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSS-CCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCCC
Confidence 22 23445667888888899999999999999999999999999999999999999999999998765432211 1111
Q ss_pred CCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC----------
Q 039402 612 GSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------- 681 (1496)
Q Consensus 612 ~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g---------- 681 (1496)
......++++|++|+|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 349 ~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~ 426 (598)
T 3qf4_B 349 REVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSS 426 (598)
T ss_dssp CSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred CCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHH
Confidence 123357999999999963 46799999999999999999999999999999999999999999999999
Q ss_pred ---eeEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 682 ---TKAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 682 ---~~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
+++||||+|++|++||+|||.+|.+ .+++++.++++.++++++++.+|+|++|.+|++|.+|||||||||+||||+
T Consensus 427 ~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral 506 (598)
T 3qf4_B 427 LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAF 506 (598)
T ss_dssp HHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999875 567778889999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHH
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFME 837 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~ 837 (1496)
+++|+|+|||||||+||+++++.+.+ ++....+|+|+|+||||++.+..||+|++|++|++++.|+++|+++.++.|.+
T Consensus 507 ~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 585 (598)
T 3qf4_B 507 LANPKILILDEATSNVDTKTEKSIQA-AMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYE 585 (598)
T ss_dssp HTCCSEEEECCCCTTCCHHHHHHHHH-HHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHH
Confidence 99999999999999999999999865 55666689999999999999988999999999999999999999998888888
Q ss_pred HHHHh
Q 039402 838 LVGAH 842 (1496)
Q Consensus 838 ~~~~~ 842 (1496)
++..+
T Consensus 586 ~~~~~ 590 (598)
T 3qf4_B 586 LFTSQ 590 (598)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77543
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-67 Score=669.49 Aligned_cols=543 Identities=19% Similarity=0.235 Sum_probs=451.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 292 IKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGI 371 (1496)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~ 371 (1496)
++.+++.+++.++...++.++..++..+.|++++.+++.+..... ....+.+++++++..++..++.....+...+.+.
T Consensus 16 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (582)
T 3b5x_A 16 LWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE-SNFLRILPFMILGLMFVRGLSGFASSYCLSWVSG 94 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888888888999999999999999999998754221 1222233333455566677778888888899999
Q ss_pred HHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039402 372 RMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFS-WYIHDPWLVLFEVALSILILYKNLGIASLAALFG 450 (1496)
Q Consensus 372 ~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~ 450 (1496)
++...++..+|+|.++++...++++++|+++|++++|++.+.+++ ..+..++..++.+++++++++..-+..+++.+++
T Consensus 95 ~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 174 (582)
T 3b5x_A 95 NVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVV 174 (582)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999964 5677888888888887777766555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 039402 451 TVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINL----RKRETGWLKKYVYTSAI 526 (1496)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~----R~~E~~~l~~~~~~~~~ 526 (1496)
+++.+++...+.+...+..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+. ++.+.+..+........
T Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (582)
T 3b5x_A 175 APVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPV 254 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677778888888999999999999999999999999999999999877776544 44444444433333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc
Q 039402 527 SSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLV 606 (1496)
Q Consensus 527 ~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 606 (1496)
..++.... .+.++.++++.+..+.+++|.+++++.++..+..|+..++..+..+.++.++++|+.++++.++..++..
T Consensus 255 ~~~~~~~~--~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~ 332 (582)
T 3b5x_A 255 IQMIASLA--LFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGK 332 (582)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 33322222 2335567788888899999999999999999999999999999999999999999999997654322111
Q ss_pred cCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe----
Q 039402 607 EKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---- 682 (1496)
Q Consensus 607 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~---- 682 (1496)
.+.......++++|++|+|+.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 333 --~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~ 409 (582)
T 3b5x_A 333 --YEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD 409 (582)
T ss_pred --CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhh
Confidence 1111123469999999999632 367999999999999999999999999999999999999999999999983
Q ss_pred ---------eEEEccCCccCCCcHHHHhccCC--CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 683 ---------KAYVAQSPWIQSGKIEDNILFGK--EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 683 ---------~~yv~Q~~~i~~~ti~eNI~~g~--~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
++||||+|+++++|++|||.+|. ..++++++++++.++++++++.+|+|++|.+|++|.+|||||||||
T Consensus 410 ~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~ 489 (582)
T 3b5x_A 410 YKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489 (582)
T ss_pred CCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHH
Confidence 69999999999999999999986 4678889999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhc
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
+||||++++|+++|||||||+||+++++.+.+ .+....+|+|+|+||||++.+..||+|++|++|++++.|+++|+++.
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 490 AIARALLRDAPVLILDEATSALDTESERAIQA-ALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999998864 55666679999999999999888999999999999999999999988
Q ss_pred CcchHHHHHH
Q 039402 832 GTDFMELVGA 841 (1496)
Q Consensus 832 ~~~~~~~~~~ 841 (1496)
++.|.++...
T Consensus 569 ~~~~~~~~~~ 578 (582)
T 3b5x_A 569 DGAYAQLHRI 578 (582)
T ss_pred CcHHHHHHHH
Confidence 7778777654
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-67 Score=670.49 Aligned_cols=542 Identities=18% Similarity=0.227 Sum_probs=449.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 293 KAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIR 372 (1496)
Q Consensus 293 ~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 372 (1496)
..+++.+++.++...++.++..++..+.|++++.+++.+..... ....+.+++++++..++..++.....+...+.+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (582)
T 3b60_A 17 WPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD-RSVLLWMPLVVIGLMILRGITSYISSYCISWVSGK 95 (582)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT-HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888999999999999999999987653221 12222233334555666777777788888899999
Q ss_pred HHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039402 373 MRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADF-SWYIHDPWLVLFEVALSILILYKNLGIASLAALFGT 451 (1496)
Q Consensus 373 ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~-~~~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~~ 451 (1496)
+...++..+|+|.++++...++++++|+++|++++|++.+.++ ...+..++..++.+++++++++..-++.+++.++++
T Consensus 96 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~ 175 (582)
T 3b60_A 96 VVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLA 175 (582)
T ss_dssp HHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999996 456778888888888877777665555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 039402 452 VIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINL----RKRETGWLKKYVYTSAIS 527 (1496)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~----R~~E~~~l~~~~~~~~~~ 527 (1496)
+++.++...+.+...+..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+. ++.+.+..+.........
T Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (582)
T 3b60_A 176 PIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPII 255 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677778888889999999999999999999999999999999999887776554 444444443333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 039402 528 SFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVE 607 (1496)
Q Consensus 528 ~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~ 607 (1496)
.++.... .+.++.++++.+..+.+++|.+++++.++..+..|+..++..+..+.++.++++|+.++++.++..++...
T Consensus 256 ~~~~~~~--~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~ 333 (582)
T 3b60_A 256 QLIASLA--LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKR 333 (582)
T ss_dssp HHHHHHH--HHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCB
T ss_pred HHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCC
Confidence 3222222 23345567777778899999999999999999999999999999999999999999999987654322111
Q ss_pred CCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----
Q 039402 608 KQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----- 682 (1496)
Q Consensus 608 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~----- 682 (1496)
+.......++++|++|+|+.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 334 --~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~ 410 (582)
T 3b60_A 334 --VIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREY 410 (582)
T ss_dssp --CCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTB
T ss_pred --CCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEcccc
Confidence 111123469999999999632 267999999999999999999999999999999999999999999999983
Q ss_pred --------eEEEccCCccCCCcHHHHhccCC--CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 683 --------KAYVAQSPWIQSGKIEDNILFGK--EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 683 --------~~yv~Q~~~i~~~ti~eNI~~g~--~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
++||||+|+++++|++|||.+|. ..++++++++++.++++++++.+|+|++|.+|++|.+|||||||||+
T Consensus 411 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~ 490 (582)
T 3b60_A 411 TLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIA 490 (582)
T ss_dssp CHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHH
T ss_pred CHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 69999999999999999999986 46788899999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
||||++++|+++|||||||+||+++++.+.+ .+....+|+|+|+|||+++.+..||+|++|++|++++.|+++|+++.+
T Consensus 491 iAral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 569 (582)
T 3b60_A 491 IARALLRDSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH 569 (582)
T ss_dssp HHHHHHHCCSEEEEETTTSSCCHHHHHHHHH-HHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHT
T ss_pred HHHHHHhCCCEEEEECccccCCHHHHHHHHH-HHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcC
Confidence 9999999999999999999999999998864 556666799999999999999889999999999999999999999888
Q ss_pred cchHHHHHH
Q 039402 833 TDFMELVGA 841 (1496)
Q Consensus 833 ~~~~~~~~~ 841 (1496)
+.|.++...
T Consensus 570 ~~~~~~~~~ 578 (582)
T 3b60_A 570 GVYAQLHKM 578 (582)
T ss_dssp SSHHHHHHH
T ss_pred CHHHHHHHH
Confidence 888877653
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-59 Score=609.94 Aligned_cols=194 Identities=23% Similarity=0.339 Sum_probs=152.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhc-CCCCCccEE-EEcCeeEEEccCC-c-c
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTL-KLCGTKAYVAQSP-W-I 692 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG-~~~~~~G~i-~~~g~~~yv~Q~~-~-i 692 (1496)
.+...|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+| .+. |.- .-..+++|++|++ . .
T Consensus 435 ~L~~~~ls~~yg---~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~---g~~~~~~~~~~~v~q~~~~~~ 508 (986)
T 2iw3_A 435 DLCNCEFSLAYG---AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD---GFPTQEECRTVYVEHDIDGTH 508 (986)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCST---TCCCTTTSCEEETTCCCCCCC
T ss_pred eeEEeeEEEEEC---CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---CCccccceeEEEEcccccccc
Confidence 466667788884 4579999999999999999999999999999999994 331 100 0011368999975 3 3
Q ss_pred CCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCC
Q 039402 693 QSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSA 772 (1496)
Q Consensus 693 ~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~sa 772 (1496)
...|+.||+.+...-.+++.+++++..++..+. ..+...+||||||||++|||||+.+|+++||||||++
T Consensus 509 ~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~----------~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~ 578 (986)
T 2iw3_A 509 SDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEM----------IAMPISALSGGWKMKLALARAVLRNADILLLDEPTNH 578 (986)
T ss_dssp TTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHH----------HHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTT
T ss_pred cCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhh----------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 456999999862110156667777777763222 1345578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEE-EecChHHHH
Q 039402 773 VDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKIT-QAGKYNDLI 829 (1496)
Q Consensus 773 LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~G~~~~l~ 829 (1496)
||+.+..++.+. ++. .|+|+|+|||+++++.. ||+|++|++|+++ ..|+++++.
T Consensus 579 LD~~~~~~l~~~-L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 579 LDTVNVAWLVNY-LNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp CCHHHHHHHHHH-HHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred CCHHHHHHHHHH-HHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 999999888754 444 68999999999999876 9999999999997 689887764
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-61 Score=605.34 Aligned_cols=199 Identities=25% Similarity=0.332 Sum_probs=169.9
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
-.++++|++++|.+ ..|+++||+|++||++||+|+||||||||+++|.|+++|++|+|.+ +.++
T Consensus 356 ~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred eEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 36999999999964 3799999999999999999999999999999999999999999986 2479
Q ss_pred EEEcccccc-cccchhhccCCC--CCC-cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1324 SIIPQDPVM-FEGTVRSNLDPL--EES-TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1324 ~iIpQdp~L-F~gTIR~NLdp~--~~~-sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
+|+||++.+ ++.|+++|+... ..+ ..+.+.++++..++.+.. |.+ ..+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-------DRN----VEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT-------TSB----GGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHh-------cCC----hhhCCHHHHHHHHHHHHHHh
Confidence 999999876 567999998532 111 234466777777765432 222 35799999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeC--CeEeEecChhhHhh
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNH--GLIEEFDNPANLLE 1469 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~--G~IvE~g~p~~Ll~ 1469 (1496)
+|+||||||||++||+.+...+.+.|++.. .+.|||+|+|+++.+.. ||||++|++ |++++.|+|+++++
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999864 48899999999999976 999999996 88889999999885
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-60 Score=594.66 Aligned_cols=198 Identities=25% Similarity=0.322 Sum_probs=167.7
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.++++|++++|.+ ..|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.+ +.+++
T Consensus 287 ~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~ 350 (538)
T 1yqt_A 287 LVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVA 350 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEE
T ss_pred EEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEE
Confidence 5899999999964 3699999999999999999999999999999999999999999986 24699
Q ss_pred EEcccccc-cccchhhccCCC--CCC-cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccC
Q 039402 1325 IIPQDPVM-FEGTVRSNLDPL--EES-TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1400 (1496)
Q Consensus 1325 iIpQdp~L-F~gTIR~NLdp~--~~~-sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~ 1400 (1496)
|+||++.. +..|+++|+... ..+ ..+.+.+++++.++.+.. .....+||||||||++|||||+++
T Consensus 351 ~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGGe~qrv~lAraL~~~ 419 (538)
T 1yqt_A 351 YKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLY-----------DREVNELSGGELQRVAIAATLLRD 419 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGT-----------TSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999976 567999987532 111 234455666666654322 223357999999999999999999
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeC--CeEeEecChhhHhh
Q 039402 1401 SKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNH--GLIEEFDNPANLLE 1469 (1496)
Q Consensus 1401 ~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~--G~IvE~g~p~~Ll~ 1469 (1496)
|++|||||||++||..+...|.+.|++.. .+.|||+|+|+++.+.. ||||+||++ |++++.|+|++++.
T Consensus 420 p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999864 38899999999999986 999999996 78889999999885
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-60 Score=547.82 Aligned_cols=276 Identities=28% Similarity=0.425 Sum_probs=248.3
Q ss_pred HHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCC
Q 039402 1204 ACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTG 1283 (1496)
Q Consensus 1204 ~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTG 1283 (1496)
+++++..+.+++|+.++++.+++... ...+.+.++..|.|+|+||+|+|+++ .++|+||||+|++||++|||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKD---LPGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCC---CTTCBCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSC
T ss_pred chhHHHHHHHHHHHHHHHhCCccccc---cccccccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCC
Confidence 46677888999999999875443221 11112223457899999999999754 569999999999999999999999
Q ss_pred CCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC-CCcHHHHHHHHHHcCCc
Q 039402 1284 SGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLG 1362 (1496)
Q Consensus 1284 SGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~ 1362 (1496)
||||||+++|+|+++|++|+|.+||.|+..++.+++|++|++|||+|.+|++||++||.... ..++++++++++.+++.
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999997543 57899999999999999
Q ss_pred HHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcc
Q 039402 1363 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRIT 1442 (1496)
Q Consensus 1363 ~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ 1442 (1496)
+++..+|+||||.++++|.+||||||||+||||||+++|+|||||||||+||+.+++.|++.|++..+++|+|+||||++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred hhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHhh
Q 039402 1443 SVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTL 1484 (1496)
Q Consensus 1443 ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~~ 1484 (1496)
++..||+|+||++|+|+|.|+|++|+++ ++.|++|++....
T Consensus 251 ~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 251 TVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 9999999999999999999999999975 6899999987654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-59 Score=605.37 Aligned_cols=212 Identities=25% Similarity=0.292 Sum_probs=157.9
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHh----------------------cccCCCccEEEECCeeCCCCChH
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLF----------------------RIVEPAAGQILIDGIDISLIGLH 1317 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~----------------------rl~ep~~G~I~IDG~dI~~i~l~ 1317 (1496)
..+|+||||+|++||++||+|+||||||||+++++ |+. +.+|.|.++|.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccccCCCCCCc
Confidence 35899999999999999999999999999998754 333 3457899999998765532
Q ss_pred HHhccc-----------------------------------------EEEccccccc-----------------------
Q 039402 1318 DLRSRL-----------------------------------------SIIPQDPVMF----------------------- 1333 (1496)
Q Consensus 1318 ~LR~~i-----------------------------------------~iIpQdp~LF----------------------- 1333 (1496)
..+... ++++|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 222211 2333332221
Q ss_pred ----------ccchhhccCCCCCCc-HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC-
Q 039402 1334 ----------EGTVRSNLDPLEEST-DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS- 1401 (1496)
Q Consensus 1334 ----------~gTIR~NLdp~~~~s-d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~- 1401 (1496)
.-|+++|++.+.... .++..++++.+++.+ ........+||||||||++|||||+++|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGY----------MKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTT----------SBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCch----------hhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 246777776443322 234555666665531 1223455789999999999999999886
Q ss_pred --CEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEE------eCCeEeEecChhhHhhcCC
Q 039402 1402 --KILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLL------NHGLIEEFDNPANLLENKS 1472 (1496)
Q Consensus 1402 --~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL------~~G~IvE~g~p~~Ll~~~~ 1472 (1496)
+||||||||++||+.+...|.+.|++.. .++|||+|+|+++.+..||||+|| ++|+|++.|+|+++.+.++
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~ 643 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKE 643 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCc
Confidence 5999999999999999999999998764 479999999999999899999999 8999999999999987766
Q ss_pred cHHHHHHHHH
Q 039402 1473 SSFSQLVAEY 1482 (1496)
Q Consensus 1473 s~F~~l~~~~ 1482 (1496)
.......+..
T Consensus 644 ~~~~~~~~~~ 653 (670)
T 3ux8_A 644 SHTGRYLKPI 653 (670)
T ss_dssp CHHHHHHHHH
T ss_pred cHHHHHHHHh
Confidence 6655555444
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-58 Score=573.90 Aligned_cols=199 Identities=19% Similarity=0.267 Sum_probs=167.5
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.++++|++.+|.+ ..|++.||+|++||++||+|+||||||||+++|+|+++|++|+|.++| ..++
T Consensus 269 ~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~ 333 (538)
T 3ozx_A 269 KMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILS 333 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEE
T ss_pred eEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeE
Confidence 6899999999964 468889999999999999999999999999999999999999999876 3589
Q ss_pred EEcccccc-cccchhhccCCC-C---CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1325 IIPQDPVM-FEGTVRSNLDPL-E---ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1325 iIpQdp~L-F~gTIR~NLdp~-~---~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
++||++.. +.+|+++|+... . ....+.+.++++..++.+.. .....+||||||||++|||||++
T Consensus 334 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGGq~QRv~iAraL~~ 402 (538)
T 3ozx_A 334 YKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLL-----------ESNVNDLSGGELQKLYIAATLAK 402 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCT-----------TSBGGGCCHHHHHHHHHHHHHHS
T ss_pred eechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHHHHHHc
Confidence 99999864 578999998521 1 12234456667776665332 22345799999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeC--CeEeEecChhhHhh
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNH--GLIEEFDNPANLLE 1469 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~--G~IvE~g~p~~Ll~ 1469 (1496)
+|+||||||||++||+.+...|.+.|++.. .++|||+|+|+++.+.. ||||+||++ |++...++|.++..
T Consensus 403 ~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 999999999999999999999999999864 47899999999999987 999999987 66777788887653
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-57 Score=569.57 Aligned_cols=197 Identities=22% Similarity=0.300 Sum_probs=164.8
Q ss_pred EeEEeEeCCCCCccceeeeEEeeCC-----cEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1249 LDLQVRYAPQMPLVLQGISCTFPGG-----EKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1249 ~nvs~~Y~~~~~~vLk~iS~~I~~G-----ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
++++++|+. ...+++|+||++++| |++||+|+||||||||+++|.|+.+|++|+. +. +.++
T Consensus 350 ~~~~~~y~~-~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPS-LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSCCEECC-EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred cceeEEecC-cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 566788864 335899999999999 8899999999999999999999999999972 21 3469
Q ss_pred EEEccccc-ccccchhhccCC--CCC-CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1324 SIIPQDPV-MFEGTVRSNLDP--LEE-STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1324 ~iIpQdp~-LF~gTIR~NLdp--~~~-~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
+++||++. .|.+|+++|+.. ... ...+...++++..++.+. .|. ...+||||||||++|||||+.
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~----~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI-------IDQ----EVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT-------SSS----BSSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh-------hcC----ChhhCCHHHHHHHHHHHHHHh
Confidence 99999975 578899999741 122 234556677888777543 222 235799999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeC--CeEeEecChhhHhhc
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNH--GLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~--G~IvE~g~p~~Ll~~ 1470 (1496)
+|+||||||||++||+.+...+.+.|++.. .+.|||+|+|+++.+.. ||||+||++ |+++..|+|++++..
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999999999999999999999998864 48999999999999987 999999997 999999999999964
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-50 Score=455.67 Aligned_cols=240 Identities=32% Similarity=0.506 Sum_probs=224.0
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
+..|+++||+++|+++..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+...+|++
T Consensus 5 ~~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp CEEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred cCceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 45799999999995323569999999999999999999999999999999999999999999999999999998899999
Q ss_pred cEEEcccccccccchhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 039402 1323 LSIIPQDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS 1401 (1496)
Q Consensus 1323 i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~ 1401 (1496)
|+++||+|.+|++|+++|+.... ..+++++.++++.+++.+++..+|.||++.+++.+.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998543 45678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHH
Q 039402 1402 KILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481 (1496)
Q Consensus 1402 ~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~ 1481 (1496)
+||+||||||+||+.+.+.|.+.|++..+++|||+|+|+++.+..||+|++|++|++++.|+|+++++++.+.|++++..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 99999999999999999999999998767899999999999998899999999999999999999997767889888764
Q ss_pred H
Q 039402 1482 Y 1482 (1496)
Q Consensus 1482 ~ 1482 (1496)
.
T Consensus 245 ~ 245 (247)
T 2ff7_A 245 Q 245 (247)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-50 Score=466.14 Aligned_cols=261 Identities=26% Similarity=0.422 Sum_probs=226.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCc
Q 039402 579 ISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSG 658 (1496)
Q Consensus 579 i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsG 658 (1496)
...+.++.++++|+.++++.++...+.....+.......++++|++|+|+. .+++|+|+||+|++||+++|+||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCch
Confidence 345677889999999998754322111111111122346999999999962 467999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCccEEEEcCe-------------eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhH
Q 039402 659 KSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKD 724 (1496)
Q Consensus 659 KSTLl~~ilG~~~~~~G~i~~~g~-------------~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d 724 (1496)
||||+++|+|+++|++|+|.++|. ++||+|+|++|++||+|||.+|.+ .+.++.+++++.+++.+.
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHH
Confidence 999999999999999999999984 799999999999999999999974 667888899999999999
Q ss_pred HHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCc
Q 039402 725 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEF 804 (1496)
Q Consensus 725 ~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~ 804 (1496)
++.+|.|++|.+|++|.+|||||||||+|||||+++|+|+|||||||+||+.++..+.+ .+..+.+++|+|+|||+++.
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA-SLAKVCANRTTIVVAHRLST 251 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHH-HHHHHHTTSEEEEECCSHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH-HHHHHcCCCEEEEEEcChHH
Confidence 99999999999999999999999999999999999999999999999999999998865 55666678999999999999
Q ss_pred cccCCEEEEEeCCeEEEecChHHHHhcCcchHHHHHHh
Q 039402 805 LPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAH 842 (1496)
Q Consensus 805 l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~ 842 (1496)
+..||+|++|++|+|++.|+++++++.++.|.+++..+
T Consensus 252 ~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q 289 (306)
T 3nh6_A 252 VVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQ 289 (306)
T ss_dssp HHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHH
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHH
Confidence 98899999999999999999999999888888877543
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=476.54 Aligned_cols=242 Identities=36% Similarity=0.676 Sum_probs=228.5
Q ss_pred CCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC
Q 039402 1235 RPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI 1314 (1496)
Q Consensus 1235 ~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i 1314 (1496)
.++..||..+.|+++||+++|+.+...+|+||||+|++||.+||+||||||||||+++|.|+++ ++|+|.+||.|+..+
T Consensus 9 ~~~~~~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~ 87 (390)
T 3gd7_A 9 KKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSI 87 (390)
T ss_dssp ---CCSSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSS
T ss_pred ccCcCCCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcC
Confidence 3455799999999999999997555679999999999999999999999999999999999998 999999999999999
Q ss_pred ChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1315 GLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1315 ~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
+.+++|+++++|||+|.+|++|+++|+.++....+++++++++.+++.+.....|.++++.++++|.+||||||||+|||
T Consensus 88 ~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalA 167 (390)
T 3gd7_A 88 TLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLA 167 (390)
T ss_dssp CHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHH
T ss_pred ChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHH
Confidence 99999999999999999999999999998777889999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcH
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSS 1474 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~ 1474 (1496)
|||+++|+||+||||||+||+.+...+++.|++..+++|+|+|+|+++.+..||||+||++|+|++.|+|+++++++...
T Consensus 168 RAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~ 247 (390)
T 3gd7_A 168 RSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADR 247 (390)
T ss_dssp HHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBH
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCch
Confidence 99999999999999999999999999999999887889999999999999899999999999999999999999988877
Q ss_pred HHH
Q 039402 1475 FSQ 1477 (1496)
Q Consensus 1475 F~~ 1477 (1496)
|..
T Consensus 248 ~va 250 (390)
T 3gd7_A 248 FVA 250 (390)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-48 Score=441.67 Aligned_cols=237 Identities=32% Similarity=0.512 Sum_probs=219.4
Q ss_pred ceEEEEeEEeEeCCCC-CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1244 GKIDLLDLQVRYAPQM-PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~-~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
+.|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++| +|+|.+||.|+...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 4699999999997532 4699999999999999999999999999999999999987 8999999999998888889999
Q ss_pred cEEEcccccccccchhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 039402 1323 LSIIPQDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS 1401 (1496)
Q Consensus 1323 i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~ 1401 (1496)
|+|+||+|.+|++|+++|+.... ..+++++.++++.+++.+++..+|+++|+.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999996432 34678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHH
Q 039402 1402 KILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481 (1496)
Q Consensus 1402 ~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~ 1481 (1496)
+|||||||||+||+.+.+.+.+.|++..+++|||+|+|+++.+..||+|++|++|++++.|+|+++++. .+.|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHh
Confidence 999999999999999999999999998778999999999999988999999999999999999999975 5778887764
Q ss_pred H
Q 039402 1482 Y 1482 (1496)
Q Consensus 1482 ~ 1482 (1496)
.
T Consensus 254 ~ 254 (260)
T 2ghi_A 254 Q 254 (260)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-49 Score=445.24 Aligned_cols=233 Identities=32% Similarity=0.530 Sum_probs=216.6
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+...+|+++++
T Consensus 2 l~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 7899999999532 469999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EcccccccccchhhccCCC--CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCE
Q 039402 1326 IPQDPVMFEGTVRSNLDPL--EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKI 1403 (1496)
Q Consensus 1326 IpQdp~LF~gTIR~NLdp~--~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~I 1403 (1496)
+||+|.+|++|+++|+... ...+++++.++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||+++|+|
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999864 34678889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHH
Q 039402 1404 LMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVA 1480 (1496)
Q Consensus 1404 LiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~ 1480 (1496)
|+||||||+||+.+.+.|.+.|++..+++|||+|+|+++.+..||+|++|++|++++.|+|++++++ ...|++++.
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 236 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVS 236 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHH
Confidence 9999999999999999999999987678999999999999988999999999999999999999875 456666654
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-48 Score=443.60 Aligned_cols=239 Identities=28% Similarity=0.439 Sum_probs=218.6
Q ss_pred cceEEEEeEEeEeCC-CCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhc
Q 039402 1243 HGKIDLLDLQVRYAP-QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~-~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~ 1321 (1496)
.+.|+++||+++|+. ...++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 457999999999965 2245999999999999999999999999999999999999999999999999999888888999
Q ss_pred ccEEEcccccccccchhhccCCC-CCCcH-HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1322 RLSIIPQDPVMFEGTVRSNLDPL-EESTD-EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~gTIR~NLdp~-~~~sd-~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
+|+||||+|.+|++|+++||... ....+ +++.+++++.++.+++..+|.|+++.+++.+.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999743 23344 67888999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHH
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQ 1477 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~ 1477 (1496)
+|+|||||||||+||+.+.+.|.+.|++..+ ++|||+|+|+++.+..||+|++|++|+|++.|+|++++++ .+.|.+
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~ 252 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRS 252 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHH
Confidence 9999999999999999999999999998754 7999999999999988999999999999999999999976 478888
Q ss_pred HHHHH
Q 039402 1478 LVAEY 1482 (1496)
Q Consensus 1478 l~~~~ 1482 (1496)
+++..
T Consensus 253 ~~~~~ 257 (271)
T 2ixe_A 253 MVEAL 257 (271)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 87654
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=479.81 Aligned_cols=220 Identities=22% Similarity=0.311 Sum_probs=164.6
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHH---------HHHhcccCCC------c------c
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLI---------QTLFRIVEPA------A------G 1302 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl---------~~L~rl~ep~------~------G 1302 (1496)
+.+++++++ ..+|+||||+|++||.+||+|+||||||||+ +.+.+...+. + +
T Consensus 588 ~~l~v~~~~-------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~ 660 (916)
T 3pih_A 588 ASLKIKGVR-------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDK 660 (916)
T ss_dssp SEEEEEEEC-------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCE
T ss_pred ceEEEeeec-------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccc
Confidence 456666653 2479999999999999999999999999997 2333333222 2 3
Q ss_pred EEEECCeeCCCCCh----------HHHh-------------------------------cccEEEcccccccc-------
Q 039402 1303 QILIDGIDISLIGL----------HDLR-------------------------------SRLSIIPQDPVMFE------- 1334 (1496)
Q Consensus 1303 ~I~IDG~dI~~i~l----------~~LR-------------------------------~~i~iIpQdp~LF~------- 1334 (1496)
.|.+|+.++..... +++| +..|+++|+..++.
T Consensus 661 ~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~ 740 (916)
T 3pih_A 661 MIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECD 740 (916)
T ss_dssp EEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECT
T ss_pred eEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecc
Confidence 46677766654321 1122 23577888776553
Q ss_pred --------------------------cchhhccCCCCCCc-HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1335 --------------------------GTVRSNLDPLEEST-DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1335 --------------------------gTIR~NLdp~~~~s-d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
.|+++|++.+.... .++..++|+.++|.. ..++..+.+|||||
T Consensus 741 ~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~~----------~~lgq~~~~LSGGE 810 (916)
T 3pih_A 741 VCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGY----------VKLGQPATTLSGGE 810 (916)
T ss_dssp TTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGGG----------SBTTCCSTTCCHHH
T ss_pred cccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCch----------hhccCCccCCCHHH
Confidence 24555554443322 234555666665531 23567788999999
Q ss_pred HHHHHHHHHHccCC---CEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEE------eCCe
Q 039402 1388 RQLVCLGRVLLKRS---KILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLL------NHGL 1457 (1496)
Q Consensus 1388 rQll~LARALLr~~---~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL------~~G~ 1457 (1496)
|||++|||||+++| +||||||||++||+.+.+.|++.|++.. +++|||+|+|+++.+..||+|++| ++|+
T Consensus 811 rQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~ 890 (916)
T 3pih_A 811 AQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGY 890 (916)
T ss_dssp HHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCE
T ss_pred HHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCE
Confidence 99999999999876 7999999999999999999999998764 589999999999999999999999 8999
Q ss_pred EeEecChhhHhhcCCcHHHHHHH
Q 039402 1458 IEEFDNPANLLENKSSSFSQLVA 1480 (1496)
Q Consensus 1458 IvE~g~p~~Ll~~~~s~F~~l~~ 1480 (1496)
|++.|+|++++++++++..++.+
T Consensus 891 Iv~~Gtpeel~~~~~syt~~~l~ 913 (916)
T 3pih_A 891 IVATGTPEEIAKNPHSYTGRFLK 913 (916)
T ss_dssp EEEEESHHHHHSCTTCHHHHHHT
T ss_pred EEEEcCHHHHHhCCchHHHHHHH
Confidence 99999999999988776666553
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=467.33 Aligned_cols=220 Identities=23% Similarity=0.340 Sum_probs=164.4
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHH-HhcccC-------C----------------
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQT-LFRIVE-------P---------------- 1299 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~-L~rl~e-------p---------------- 1299 (1496)
..++++|+++ .+|+||||+|++||.+||+|+||||||||++. |++++. |
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 4699999975 16999999999999999999999999999997 776542 2
Q ss_pred --Ccc-------EEEECCeeCCCCCh----------HHHhcccEEEccc-------------------------------
Q 039402 1300 --AAG-------QILIDGIDISLIGL----------HDLRSRLSIIPQD------------------------------- 1329 (1496)
Q Consensus 1300 --~~G-------~I~IDG~dI~~i~l----------~~LR~~i~iIpQd------------------------------- 1329 (1496)
.+| .|.|||.++..-+. +.+|..++.+|++
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 467 78999998865432 4455544443321
Q ss_pred ccc------------------------ccc-chhhccCC--------CCCCc-HHHHHHHHHHcCCcHHHHhccCCcccc
Q 039402 1330 PVM------------------------FEG-TVRSNLDP--------LEEST-DEQIWEALDKCQLGDEVRKKEGKLDSK 1375 (1496)
Q Consensus 1330 p~L------------------------F~g-TIR~NLdp--------~~~~s-d~eI~~aL~~~~L~~~i~~lp~gLdt~ 1375 (1496)
-.+ +.| ||.+|++. +.... .+++.++|++++|... .
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~----------~ 723 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYL----------R 723 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTS----------B
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcc----------c
Confidence 011 111 45555432 21111 2334555555554321 2
Q ss_pred cccCCCCCCchHHHHHHHHHHHccC---CCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEE
Q 039402 1376 VTENGENWSMGQRQLVCLGRVLLKR---SKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVL 1451 (1496)
Q Consensus 1376 v~e~G~nLS~GQrQll~LARALLr~---~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIl 1451 (1496)
.+.....||||||||++|||+|+++ |+||||||||++||..+.+.|.+.|++.. .+.|||+|+|+++.+..||+|+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 3455678999999999999999996 69999999999999999999999998764 5899999999999998899999
Q ss_pred EE------eCCeEeEecChhhHhhcCCcHHHHHHH
Q 039402 1452 LL------NHGLIEEFDNPANLLENKSSSFSQLVA 1480 (1496)
Q Consensus 1452 VL------~~G~IvE~g~p~~Ll~~~~s~F~~l~~ 1480 (1496)
+| ++|+|++.|+|+++++++.+.-.+..+
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~~~~t~~~l~ 838 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAPYLR 838 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCTTCSSHHHHH
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCchhHHHHHHH
Confidence 99 799999999999999876554334333
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-46 Score=417.17 Aligned_cols=226 Identities=22% Similarity=0.409 Sum_probs=204.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+++|++...++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+|| +++
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 3899999999974335699999999999999999999999999999999999999999999999 499
Q ss_pred EEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEE
Q 039402 1325 IIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKIL 1404 (1496)
Q Consensus 1325 iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~IL 1404 (1496)
++||+|.+|.+|+++|+.......+++..++++.+++.+.+..+|.|+++.+++.+.+||||||||++|||||+++|+||
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 149 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 149 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred EEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999754444455677888889998888888999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHH---HhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHH
Q 039402 1405 MLDEATASVDTATDNLIQQTLR---QHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481 (1496)
Q Consensus 1405 iLDEaTsslD~~Td~~Iq~~I~---~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~ 1481 (1496)
|||||||+||+.+.+.+.+.|+ +..+++|||+|+|+++.+..||+|++|++|++++.|+|++++++ .+.|.+++..
T Consensus 150 lLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 228 (237)
T 2cbz_A 150 LFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLRT 228 (237)
T ss_dssp EEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred EEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHHHH
Confidence 9999999999999999999995 33458999999999999888999999999999999999999875 5788888775
Q ss_pred Hhh
Q 039402 1482 YTL 1484 (1496)
Q Consensus 1482 ~~~ 1484 (1496)
+.+
T Consensus 229 ~~~ 231 (237)
T 2cbz_A 229 YAS 231 (237)
T ss_dssp TCC
T ss_pred HHh
Confidence 544
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-45 Score=412.53 Aligned_cols=222 Identities=22% Similarity=0.336 Sum_probs=199.7
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
.+.|+++||+++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+|| +
T Consensus 4 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp CEEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred cceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 357999999999975445699999999999999999999999999999999999999999999998 5
Q ss_pred cEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 039402 1323 LSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402 (1496)
Q Consensus 1323 i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ 1402 (1496)
++|+||+|.+|++|+++|+.......+....++++.+++.+.+..+|.+.++.+++.+.+||||||||++|||||+++|+
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 150 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997544445556777889999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHH-HHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHH
Q 039402 1403 ILMLDEATASVDTATDNLIQQTL-RQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQL 1478 (1496)
Q Consensus 1403 ILiLDEaTsslD~~Td~~Iq~~I-~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l 1478 (1496)
+|+||||||+||+.+.+.+.+.+ ++..+++|||+|+|+++.+..||+|++|++|++++.|+|++++++ .+.|.++
T Consensus 151 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 226 (229)
T 2pze_A 151 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSSK 226 (229)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHH
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHH
Confidence 99999999999999999999974 554468999999999999888999999999999999999999864 3445554
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-45 Score=411.57 Aligned_cols=220 Identities=39% Similarity=0.696 Sum_probs=197.6
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCC
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ 695 (1496)
..++++|++++|+. +++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|+++|++|+|++++.
T Consensus 5 ~~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~ 83 (229)
T 2pze_A 5 TEVVMENVTAFWEE-GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG 83 (229)
T ss_dssp EEEEEEEEEECSST-TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSB
T ss_pred ceEEEEEEEEEeCC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCC
Confidence 36899999999953 24689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 039402 696 KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA 775 (1496)
Q Consensus 696 ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~ 775 (1496)
|++|||.++....+.++.++++.+++.+.++.+|.+++|.+++++.+|||||||||+||||++++|+++|||||||+||+
T Consensus 84 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~ 163 (229)
T 2pze_A 84 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163 (229)
T ss_dssp CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCH
T ss_pred CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCH
Confidence 99999999876666667778888899888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchH
Q 039402 776 HTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFM 836 (1496)
Q Consensus 776 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~ 836 (1496)
++.+.+++.++....+++|+|++||+++.+..||++++|++|++++.|+++++.+....+.
T Consensus 164 ~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 224 (229)
T 2pze_A 164 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 224 (229)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHH
Confidence 9998887644433445899999999999887799999999999999999999876544443
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-45 Score=410.54 Aligned_cols=222 Identities=49% Similarity=0.883 Sum_probs=199.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCc
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGK 696 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~t 696 (1496)
.++++|++++|+. .++++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|.++||+|+|++++.|
T Consensus 3 ~l~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~t 81 (237)
T 2cbz_A 3 SITVRNATFTWAR-SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDS 81 (237)
T ss_dssp CEEEEEEEEESCT-TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEE
T ss_pred eEEEEEEEEEeCC-CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcC
Confidence 4889999999952 246799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 039402 697 IEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAH 776 (1496)
Q Consensus 697 i~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~ 776 (1496)
++|||.++....+++++++.+.+++.+++..+|.|++|.+++++.+|||||||||+|||||+++|+++|||||||+||+.
T Consensus 82 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~ 161 (237)
T 2cbz_A 82 LRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 161 (237)
T ss_dssp HHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHH
T ss_pred HHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 99999998765556677888888888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--HHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHHH
Q 039402 777 TGSHLFQEVL--LGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELV 839 (1496)
Q Consensus 777 ~~~~i~~~~~--~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~ 839 (1496)
+...+++.+. ....+++|+|+|||+++.+..||++++|++|++++.|+++++.+....|.++.
T Consensus 162 ~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 226 (237)
T 2cbz_A 162 VGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFL 226 (237)
T ss_dssp HHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHH
Confidence 9988876543 23345899999999999987899999999999999999999987766666554
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-44 Score=420.70 Aligned_cols=224 Identities=27% Similarity=0.417 Sum_probs=195.4
Q ss_pred cceEEEEeEEeEeCCCC--CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH--
Q 039402 1243 HGKIDLLDLQVRYAPQM--PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-- 1318 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~--~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-- 1318 (1496)
...|+++||+++|+... ..+|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+.++
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 34699999999996432 35999999999999999999999999999999999999999999999999999998765
Q ss_pred -HhcccEEEccccccccc-chhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1319 -LRSRLSIIPQDPVMFEG-TVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1319 -LR~~i~iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
+|++||+|||+|.+|.. ||++|+... ...+ ++++.++|+.++|.+...+. ..+|||||||
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~-----------~~~LSGGqkQ 170 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY-----------PSNLSGGQKQ 170 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCC-----------TTTSCHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHH
Confidence 47899999999999876 999999521 1222 34577889999887654333 3578999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~ 1466 (1496)
|++|||||+.+|+||+||||||+||+.+.+.|.+.|++.. .++|||+|||+++.+.. ||||+||++|+|++.|+|++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999864 38999999999999986 99999999999999999999
Q ss_pred HhhcCCcHHHH
Q 039402 1467 LLENKSSSFSQ 1477 (1496)
Q Consensus 1467 Ll~~~~s~F~~ 1477 (1496)
++.++...+.+
T Consensus 251 v~~~p~~~~~~ 261 (366)
T 3tui_C 251 VFSHPKTPLAQ 261 (366)
T ss_dssp HHSSCCSHHHH
T ss_pred HHhCCCcHHHH
Confidence 99887765543
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-43 Score=397.44 Aligned_cols=222 Identities=29% Similarity=0.425 Sum_probs=199.6
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++|++++|+. +++++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 6 ~~~~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCC-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 46899999999942 1357999999999999999999999999999999999999999999999983
Q ss_pred eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 039402 683 KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761 (1496)
Q Consensus 683 ~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 761 (1496)
++||+|+|.+++.|++|||.++.+ .++++..++++.+++.+.++.+|.|.++.+++++.+|||||||||+|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 699999999998999999999753 4567778889999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhc-CcchHHHH
Q 039402 762 DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINS-GTDFMELV 839 (1496)
Q Consensus 762 ~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~-~~~~~~~~ 839 (1496)
+++|||||||+||+.+...+.+. +..+.+|+|+|+|||+++.+..||+|++|++|++++.|+++++.+. ...|.++.
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~-l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~ 242 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHH-HHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHH-HHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHH
Confidence 99999999999999999988754 4444579999999999998878999999999999999999999876 55565544
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-44 Score=409.55 Aligned_cols=214 Identities=29% Similarity=0.417 Sum_probs=187.3
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCC--CCChHHHhcc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS--LIGLHDLRSR 1322 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~--~i~l~~LR~~ 1322 (1496)
.|+++||+++|+.. .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|++
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 59999999999654 35999999999999999999999999999999999999999999999999994 3345678999
Q ss_pred cEEEcccc--cccccchhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH
Q 039402 1323 LSIIPQDP--VMFEGTVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1393 (1496)
Q Consensus 1323 i~iIpQdp--~LF~gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~L 1393 (1496)
||+|||+| .+|..|+++|+... ...+ ++.+.++|+.+++.+...+. ..+||||||||++|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGqkQRv~i 154 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKP-----------THCLSFGQKKRVAI 154 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSB-----------GGGSCHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------cccCCHHHHHHHHH
Confidence 99999998 57888999999521 1222 34577889998886543332 35789999999999
Q ss_pred HHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1394 GRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1394 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
||||+.+|+|||||||||+||+.+.+.+.+.|++.. .++|||+|+|+++.+.. ||||++|++|++++.|+|++++++
T Consensus 155 AraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998764 28999999999999976 999999999999999999999865
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-44 Score=400.67 Aligned_cols=213 Identities=23% Similarity=0.334 Sum_probs=183.0
Q ss_pred EEEEeEEeEeCCCC--CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHH----
Q 039402 1246 IDLLDLQVRYAPQM--PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL---- 1319 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~--~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L---- 1319 (1496)
|+++||+++|+.+. .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+..++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 359999999999999999999999999999999999999999999999999999987764
Q ss_pred hcccEEEccccccccc-chhhccCC----C--CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 039402 1320 RSRLSIIPQDPVMFEG-TVRSNLDP----L--EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1320 R~~i~iIpQdp~LF~g-TIR~NLdp----~--~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
|+++++|||+|.+|.+ |+++|+.. . ...+ .+++.++++.+++.+... ......||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFA----------NHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGT----------TCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhh----------hCChhhCCHHHH
Confidence 4569999999999987 99999852 1 1222 345677888888764321 123467999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcccCEEEEEeCCeEeEecChhh
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~ 1466 (1496)
||++|||||+++|+|||||||||+||+.+...+.+.|++..+ ++|||+|+|+++....||||++|++|+|++.+++++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999988643 899999999999777799999999999999999888
Q ss_pred Hh
Q 039402 1467 LL 1468 (1496)
Q Consensus 1467 Ll 1468 (1496)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 64
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-43 Score=398.63 Aligned_cols=222 Identities=30% Similarity=0.486 Sum_probs=198.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~ 683 (1496)
.++++|++++|+....+++|+|+||+|++||+++|+||||||||||+++|+|.++| +|+|.++|. +
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence 59999999999632225799999999999999999999999999999999999987 899999883 6
Q ss_pred EEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 039402 684 AYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762 (1496)
Q Consensus 684 ~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1496)
+||+|+|.+++.|++|||.++.. .+++++.++++.+++.+.++.+|.+.+|.+++++.+|||||||||+|||||+++|+
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 175 (260)
T 2ghi_A 96 GIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175 (260)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999753 45667778888889988888899999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHHHH
Q 039402 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVG 840 (1496)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~ 840 (1496)
++|||||||+||+.+...+.+ ++..+.+++|+|+|||+++.+..||+|++|++|++++.|+++++......|.++..
T Consensus 176 lllLDEPts~LD~~~~~~i~~-~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 252 (260)
T 2ghi_A 176 IVIFDEATSSLDSKTEYLFQK-AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252 (260)
T ss_dssp EEEEECCCCTTCHHHHHHHHH-HHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred EEEEECccccCCHHHHHHHHH-HHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHH
Confidence 999999999999999888865 55555568999999999999888999999999999999999999876666665543
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-43 Score=395.55 Aligned_cols=213 Identities=22% Similarity=0.399 Sum_probs=182.9
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHH-hccc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-RSRL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i 1323 (1496)
.|+++||+++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 5999999999964 469999999999999999999999999999999999999999999999999988887665 4569
Q ss_pred EEEccccccccc-chhhccCCCC--CCcH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPLE--ESTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~~--~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
+++||+|.+|.+ |+++|+.... ..++ +.+.++++..+ |++........+||||||||++||||
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LSgGq~qrv~lAra 153 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFP----------RLKERLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCH----------HHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcc----------cHhhHhcCChhhCCHHHHHHHHHHHH
Confidence 999999999988 9999996321 1122 23444444442 23333444567899999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
|+++|+||+||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|+|+++++
T Consensus 154 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999999999999999999999998865 58999999999988765 99999999999999999999985
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=398.41 Aligned_cols=217 Identities=28% Similarity=0.482 Sum_probs=195.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~ 684 (1496)
++++|++++|+ +++++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|. ++
T Consensus 2 l~~~~l~~~y~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSS--SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeC--CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 68899999994 2467999999999999999999999999999999999999999999999883 58
Q ss_pred EEccCCccCCCcHHHHhccC-C-CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 039402 685 YVAQSPWIQSGKIEDNILFG-K-EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762 (1496)
Q Consensus 685 yv~Q~~~i~~~ti~eNI~~g-~-~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1496)
||+|+|.+++.|++|||.++ . ..++++..++++.+++.+.++.+|.|.++.+++++.+|||||||||+|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997 3 356677888899999988899999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHH
Q 039402 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFME 837 (1496)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~ 837 (1496)
++|||||||+||+.+.+.+.+. +..+.+|+|+|+|||+++.+..||+|++|++|++++.|+++++......+.+
T Consensus 160 lllLDEPts~LD~~~~~~i~~~-l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 233 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKA-LDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAK 233 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHH-HHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHH-HHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHH
Confidence 9999999999999999988754 4444479999999999998877999999999999999999998765433433
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=444.16 Aligned_cols=213 Identities=25% Similarity=0.315 Sum_probs=157.6
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHh-ccc----C---CCcc-------------
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLF-RIV----E---PAAG------------- 1302 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~-rl~----e---p~~G------------- 1302 (1496)
..++++|++. .+|+||||+|++||.+||+|+||||||||++.|+ +.+ . +..|
T Consensus 628 ~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 628 RWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp CEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred eEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 4699999862 2699999999999999999999999999999854 322 1 1233
Q ss_pred EEEECCeeCCCCCh----------HHHh---------cccEEEcccccc---------------------c---------
Q 039402 1303 QILIDGIDISLIGL----------HDLR---------SRLSIIPQDPVM---------------------F--------- 1333 (1496)
Q Consensus 1303 ~I~IDG~dI~~i~l----------~~LR---------~~i~iIpQdp~L---------------------F--------- 1333 (1496)
.|.|||.+|..-.. +..| +++||+||...+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 48899988853221 1222 235788885321 0
Q ss_pred ----------------c---------cchhhccCCCCCCc-HHHHHHHHHHcCCcHHHHhccCCccc-ccccCCCCCCch
Q 039402 1334 ----------------E---------GTVRSNLDPLEEST-DEQIWEALDKCQLGDEVRKKEGKLDS-KVTENGENWSMG 1386 (1496)
Q Consensus 1334 ----------------~---------gTIR~NLdp~~~~s-d~eI~~aL~~~~L~~~i~~lp~gLdt-~v~e~G~nLS~G 1386 (1496)
. -|+++|+..+.... .++..++|++++| +. ..+.....||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL-----------~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGL-----------GYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTC-----------SSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCC-----------CcccccCchhhCCHH
Confidence 1 13333333222221 1223444555544 32 344556789999
Q ss_pred HHHHHHHHHHHccCC---CEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEE------eCC
Q 039402 1387 QRQLVCLGRVLLKRS---KILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLL------NHG 1456 (1496)
Q Consensus 1387 QrQll~LARALLr~~---~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL------~~G 1456 (1496)
||||++|||||+++| +||||||||++||+.+.+.|.+.|++.. ++.|||+|+|+++.+..||+|++| ++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G 929 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG 929 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence 999999999999875 9999999999999999999999998764 589999999999999889999999 799
Q ss_pred eEeEecChhhHhhcCCcH
Q 039402 1457 LIEEFDNPANLLENKSSS 1474 (1496)
Q Consensus 1457 ~IvE~g~p~~Ll~~~~s~ 1474 (1496)
+|++.|+|+++++++.+.
T Consensus 930 ~Iv~~g~~~el~~~~~~~ 947 (972)
T 2r6f_A 930 QIVAVGTPEEVAEVKESH 947 (972)
T ss_dssp SEEEEESHHHHHTCTTCH
T ss_pred EEEEecCHHHHHhCchhH
Confidence 999999999999766554
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=396.82 Aligned_cols=217 Identities=28% Similarity=0.429 Sum_probs=189.4
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCC--CCChHHHhcc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS--LIGLHDLRSR 1322 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~--~i~l~~LR~~ 1322 (1496)
.|+++||+++|.. .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+. ......+|++
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 5999999999953 35999999999999999999999999999999999999999999999999985 3445678889
Q ss_pred cEEEccccccccc-chhhccCCC----CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH
Q 039402 1323 LSIIPQDPVMFEG-TVRSNLDPL----EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1393 (1496)
Q Consensus 1323 i~iIpQdp~LF~g-TIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~L 1393 (1496)
+++|||+|.+|.. |+++|+... ...+ ++++.++++++++.+...+ ...+||||||||++|
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA-----------YPDSLSGGQAQRVAI 170 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-----------ChhhCCHHHHHHHHH
Confidence 9999999999987 999998631 1222 3457788999888654322 235799999999999
Q ss_pred HHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcC
Q 039402 1394 GRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471 (1496)
Q Consensus 1394 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~ 1471 (1496)
||||+.+|++||||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|+|+++++++
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999999998864 47899999999999875 9999999999999999999999765
Q ss_pred CcH
Q 039402 1472 SSS 1474 (1496)
Q Consensus 1472 ~s~ 1474 (1496)
...
T Consensus 251 ~~~ 253 (263)
T 2olj_A 251 QHE 253 (263)
T ss_dssp CSH
T ss_pred ccH
Confidence 443
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=396.06 Aligned_cols=224 Identities=26% Similarity=0.401 Sum_probs=195.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++|++++|+....+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 3699999999996322367999999999999999999999999999999999999999999999983
Q ss_pred eEEEccCCccCCCcHHHHhccCCCC-CH-HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 683 KAYVAQSPWIQSGKIEDNILFGKEM-NR-ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 683 ~~yv~Q~~~i~~~ti~eNI~~g~~~-~~-~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
++||+|+|.+++.|++|||.++... .. ++..+.++..++.+.++.+|.|.++..++++.+|||||||||+|||||+.+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 6999999999999999999998542 22 444555666677788889988888999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHH
Q 039402 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS--SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMEL 838 (1496)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~ 838 (1496)
|+++|||||||+||+.+...+.+ ++..+.+ |+|+|+|||+++.+..||+|++|++|++++.|+++++......|.++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~-~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 253 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQR-LLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSM 253 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHH-HHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHH-HHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHH
Confidence 99999999999999999888865 4555433 89999999999988789999999999999999999998776666655
Q ss_pred HH
Q 039402 839 VG 840 (1496)
Q Consensus 839 ~~ 840 (1496)
+.
T Consensus 254 ~~ 255 (271)
T 2ixe_A 254 VE 255 (271)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=396.74 Aligned_cols=213 Identities=21% Similarity=0.296 Sum_probs=190.3
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+++|.. .++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+.+.+|++++
T Consensus 11 ~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 11 LLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 6999999999964 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccc-cccchhhccCCC----C-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc
Q 039402 1325 IIPQDPVM-FEGTVRSNLDPL----E-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL 1398 (1496)
Q Consensus 1325 iIpQdp~L-F~gTIR~NLdp~----~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL 1398 (1496)
++||++.+ |..|+++|+... . ...++++.++++++++.+...+. ..+||||||||++|||||+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRD-----------YRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSB-----------GGGCCHHHHHHHHHHHHHH
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCC-----------cccCCHHHHHHHHHHHHHh
Confidence 99999976 667999998532 1 23356788999999886543222 2469999999999999999
Q ss_pred c------CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1399 K------RSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1399 r------~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
+ +|++||||||||+||+.+.+.+.+.|++..+ ++|||+|+|+++.+.. ||||++|++|++++.|+|+++++
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 9 9999999999999999999999999988643 5799999999999875 99999999999999999999985
Q ss_pred c
Q 039402 1470 N 1470 (1496)
Q Consensus 1470 ~ 1470 (1496)
.
T Consensus 238 ~ 238 (266)
T 4g1u_C 238 A 238 (266)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-43 Score=402.85 Aligned_cols=210 Identities=22% Similarity=0.364 Sum_probs=178.1
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
.+.|+++||+++| .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+|| +
T Consensus 38 ~~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~ 100 (290)
T 2bbs_A 38 DDSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 100 (290)
T ss_dssp ------------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred CceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence 4579999999864 3599999999999999999999999999999999999999999999998 5
Q ss_pred cEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 039402 1323 LSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402 (1496)
Q Consensus 1323 i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ 1402 (1496)
++|+||+|.+|++|+++|+. ...+.+..+.++++.+++.+.+..+|.++++.+++.+.+||||||||++|||||+++|+
T Consensus 101 i~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ 179 (290)
T 2bbs_A 101 ISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179 (290)
T ss_dssp EEEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999998 33344556677888999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHH-HHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhc
Q 039402 1403 ILMLDEATASVDTATDNLIQQTL-RQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1403 ILiLDEaTsslD~~Td~~Iq~~I-~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
+|+||||||+||+.+...+.+.+ ++..+++|||+|+|+++.+..||+|++|++|++++.|+|+++++.
T Consensus 180 lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 248 (290)
T 2bbs_A 180 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 248 (290)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh
Confidence 99999999999999999999874 444468999999999999888999999999999999999999863
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-42 Score=390.47 Aligned_cols=214 Identities=24% Similarity=0.412 Sum_probs=188.8
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
-+.|+++||+++|.. .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.. ....+|++
T Consensus 13 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp -CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 367999999999963 369999999999999999999999999999999999999999999999999976 45678899
Q ss_pred cEEEccccccccc-chhhccCCCC---CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1323 LSIIPQDPVMFEG-TVRSNLDPLE---EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1323 i~iIpQdp~LF~g-TIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
++++||+|.+|.+ |+++|+.... ..+ ++++.++++.+++.+...+ ...+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-----------RVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS-----------BGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999999999887 9999996321 122 2457788998888655433 2357999999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
|||+++|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++.+.. ||+|++|++|++++.|+|+++.+.
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999999999999998864 47999999999999987 999999999999999999999754
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=406.13 Aligned_cols=221 Identities=23% Similarity=0.333 Sum_probs=191.5
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC--CChHHHhcc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL--IGLHDLRSR 1322 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~--i~l~~LR~~ 1322 (1496)
.|+++||+++|.. ..+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.|+.. ......|++
T Consensus 4 ~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 4899999999964 359999999999999999999999999999999999999999999999999933 223445788
Q ss_pred cEEEccccccccc-chhhccCCCC---CC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1323 LSIIPQDPVMFEG-TVRSNLDPLE---ES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1323 i~iIpQdp~LF~g-TIR~NLdp~~---~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
||+|||++.+|.. ||++|+.... .. .++++.++|+.++|.+...+.| .+||||||||++||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRValA 150 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAALA 150 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999976 9999996421 11 2356788999999876554444 46899999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcC
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~ 1471 (1496)
|||+++|++|+||||||+||+.+...+++.|++.. .++|+|+|||+++.+.. ||||+||++|+|++.|+|+++++++
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 99999999999999999999999999988776643 48999999999999876 9999999999999999999999988
Q ss_pred CcHHHHH
Q 039402 1472 SSSFSQL 1478 (1496)
Q Consensus 1472 ~s~F~~l 1478 (1496)
...|...
T Consensus 231 ~~~~~a~ 237 (359)
T 3fvq_A 231 ADLDAAL 237 (359)
T ss_dssp SCHHHHH
T ss_pred ccHHHHH
Confidence 7777544
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-42 Score=393.11 Aligned_cols=212 Identities=25% Similarity=0.327 Sum_probs=187.7
Q ss_pred EEEEeEEeEeCCCC---CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1246 IDLLDLQVRYAPQM---PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~---~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
|+++||+++|..+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 79999999996222 3699999999999999999999999999999999999999999999999998742 67889
Q ss_pred cEEEcccc--cccccchhhccCCCC------CCcHHHHHHHHHHcCCc--HHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1323 LSIIPQDP--VMFEGTVRSNLDPLE------ESTDEQIWEALDKCQLG--DEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1323 i~iIpQdp--~LF~gTIR~NLdp~~------~~sd~eI~~aL~~~~L~--~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
++++||+| .++..|+++|+.... +..++++.++++.+++. +...+.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999997 567889999996321 12256788999999998 6654443 468999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
|||||+++|+|||||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|++++++++
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998864 47999999999999986 999999999999999999999875
Q ss_pred C
Q 039402 1471 K 1471 (1496)
Q Consensus 1471 ~ 1471 (1496)
+
T Consensus 229 ~ 229 (266)
T 2yz2_A 229 Y 229 (266)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-42 Score=392.16 Aligned_cols=218 Identities=28% Similarity=0.419 Sum_probs=189.8
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC----------C
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL----------I 1314 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~----------i 1314 (1496)
.|+++||+++|.. .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.. .
T Consensus 6 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4999999999963 359999999999999999999999999999999999999999999999999862 4
Q ss_pred Ch---HHHhcccEEEccccccccc-chhhccCCC----CCCc----HHHHHHHHHHcCCcHH-HHhccCCcccccccCCC
Q 039402 1315 GL---HDLRSRLSIIPQDPVMFEG-TVRSNLDPL----EEST----DEQIWEALDKCQLGDE-VRKKEGKLDSKVTENGE 1381 (1496)
Q Consensus 1315 ~l---~~LR~~i~iIpQdp~LF~g-TIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~-i~~lp~gLdt~v~e~G~ 1381 (1496)
+. ..+|+++++|||++.+|.. |+++|+... ...+ ++++.++++++++.+. ..+. ..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~ 152 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-----------PV 152 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-----------GG
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-----------cc
Confidence 43 3568889999999999987 999999631 1222 3457889999999876 4433 34
Q ss_pred CCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEe
Q 039402 1382 NWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIE 1459 (1496)
Q Consensus 1382 nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~Iv 1459 (1496)
+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 689999999999999999999999999999999999999999998864 47899999999999875 9999999999999
Q ss_pred EecChhhHhhcCCcHH
Q 039402 1460 EFDNPANLLENKSSSF 1475 (1496)
Q Consensus 1460 E~g~p~~Ll~~~~s~F 1475 (1496)
+.|+|+++++++...+
T Consensus 233 ~~g~~~~~~~~~~~~~ 248 (262)
T 1b0u_A 233 EEGDPEQVFGNPQSPR 248 (262)
T ss_dssp EEECHHHHHHSCCSHH
T ss_pred EeCCHHHHHhCcchHH
Confidence 9999999987654433
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-42 Score=407.65 Aligned_cols=218 Identities=20% Similarity=0.340 Sum_probs=193.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+++|.. ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+.+ +++|+
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 78 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999999988765 46799
Q ss_pred EEccccccccc-chhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
+|+|++.+|.. ||++|+... ...+ ++++.++|+.+++.+...+.| .+||||||||++||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----------~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG-----------GGSCHHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hHCCHHHHHHHHHHHH
Confidence 99999999976 999999731 1222 345778899998876544443 4689999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCc
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s 1473 (1496)
|+++|+|||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|++.|+|+++++++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~ 227 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCcc
Confidence 9999999999999999999999999999988653 7999999999999876 999999999999999999999998877
Q ss_pred HHHH
Q 039402 1474 SFSQ 1477 (1496)
Q Consensus 1474 ~F~~ 1477 (1496)
.|..
T Consensus 228 ~~v~ 231 (381)
T 3rlf_A 228 RFVA 231 (381)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-42 Score=397.91 Aligned_cols=210 Identities=39% Similarity=0.693 Sum_probs=176.9
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCC
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ 695 (1496)
..++++|+++.+ +++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|+++|++|+|.++++
T Consensus 39 ~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~ 113 (290)
T 2bbs_A 39 DSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPG 113 (290)
T ss_dssp -----------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSS
T ss_pred ceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcc
Confidence 458899998852 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 039402 696 KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA 775 (1496)
Q Consensus 696 ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~ 775 (1496)
|++|||. +......++.+.++.+++.+.++.+|.++++.+++++.+|||||||||+|||||+++|+++|||||||+||+
T Consensus 114 tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~ 192 (290)
T 2bbs_A 114 TIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192 (290)
T ss_dssp BHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred cHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCH
Confidence 9999998 655555566677888889888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhc
Q 039402 776 HTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 776 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
.+...+++.++....+++|+|+|||+++.+..||++++|++|++++.|+++++...
T Consensus 193 ~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 248 (290)
T 2bbs_A 193 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 248 (290)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh
Confidence 99988876433333458999999999998877999999999999999999988653
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-42 Score=390.38 Aligned_cols=209 Identities=24% Similarity=0.281 Sum_probs=182.4
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH-HHhccc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH-DLRSRL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~-~LR~~i 1323 (1496)
.|+++||+++|.. .++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+.. ..|+++
T Consensus 7 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999964 3599999999999999999999999999999999999999999999999999877654 467889
Q ss_pred EEEcccccccc-cchhhccCCC--C---C-----------Cc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCC
Q 039402 1324 SIIPQDPVMFE-GTVRSNLDPL--E---E-----------ST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGEN 1382 (1496)
Q Consensus 1324 ~iIpQdp~LF~-gTIR~NLdp~--~---~-----------~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1382 (1496)
+++||+|.+|. .|+++|+... . . .+ .+++.++++.+++.+... ....+
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~ 153 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD-----------RKAGE 153 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGG
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhC-----------CCchh
Confidence 99999999886 5999998531 1 1 11 235677888887754432 23457
Q ss_pred CCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeE
Q 039402 1383 WSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEE 1460 (1496)
Q Consensus 1383 LS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE 1460 (1496)
||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998864 37999999999999875 99999999999999
Q ss_pred ecChhh
Q 039402 1461 FDNPAN 1466 (1496)
Q Consensus 1461 ~g~p~~ 1466 (1496)
.|+|++
T Consensus 234 ~g~~~~ 239 (257)
T 1g6h_A 234 EGRGEE 239 (257)
T ss_dssp EEESHH
T ss_pred EeCHHH
Confidence 999999
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-42 Score=386.24 Aligned_cols=208 Identities=25% Similarity=0.381 Sum_probs=183.0
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++||+++|++ +|+|+||+|++ |.+||+||||||||||+++|.|+++|++|+|.+||.++.... ..|+++++
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 689999999953 59999999999 999999999999999999999999999999999999997643 45788999
Q ss_pred Eccccccccc-chhhccCCCCC-C----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1326 IPQDPVMFEG-TVRSNLDPLEE-S----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp~~~-~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
+||+|.+|.. |+++|+..... + .++++.++++.+++.+...+. ..+||||||||++|||||++
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK-----------PARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCC-----------GGGSCHHHHHHHHHHHHHTT
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCC-----------hhhCCHHHHHHHHHHHHHHc
Confidence 9999999987 99999964321 1 245678888888876543332 35799999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcC
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~ 1471 (1496)
+|++|+||||||+||+.+.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+|+++++++
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999999999999999988643 7899999999998865 9999999999999999999998765
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-42 Score=383.65 Aligned_cols=206 Identities=22% Similarity=0.288 Sum_probs=179.9
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH---Hh-
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---LR- 1320 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR- 1320 (1496)
.|+++|++++|+. .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+..+ +|
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 4899999999964 46999999999999999999999999999999999999999999999999998887653 44
Q ss_pred cccEEEccccccccc-chhhccCCC---CCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1321 SRLSIIPQDPVMFEG-TVRSNLDPL---EES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1321 ~~i~iIpQdp~LF~g-TIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
++++++||+|.+|.. |+++|+... ... .++++.++++.+++.+...+ ...+||||||||++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSR-----------KPYELSGGEQQRVA 150 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-----------CGGGSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 789999999998875 999998531 111 23457788888887654322 23579999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEEeCCeEeEecC
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDN 1463 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~ 1463 (1496)
|||||+.+|++|+|||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+..||+|++|++|++++.|+
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999998864 4799999999999887799999999999999886
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-42 Score=394.04 Aligned_cols=214 Identities=19% Similarity=0.240 Sum_probs=186.0
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCC--CCChHHHhc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS--LIGLHDLRS 1321 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~--~i~l~~LR~ 1321 (1496)
..|+++||+++|.. .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. ..+..++|+
T Consensus 20 ~~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred ceEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 35999999999964 36999999999999999999999999999999999999999999999999998 777888999
Q ss_pred ccEEEcccccc-ccc--chhhccCCCC--------CCc---HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1322 RLSIIPQDPVM-FEG--TVRSNLDPLE--------EST---DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1322 ~i~iIpQdp~L-F~g--TIR~NLdp~~--------~~s---d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
+|+++||+|.+ |.. |+++|+.... ... ++++.++++.+++.+...+ ...+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQ-----------YIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHH
Confidence 99999999975 555 9999996321 112 2457788888887654322 235799999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC-CcEE--EEEccCcchhcc-cCEEEEEeCCeEeEecC
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS-DCTV--LTIAHRITSVID-SDLVLLLNHGLIEEFDN 1463 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~-~~TV--I~IAHRl~ti~~-~DrIlVL~~G~IvE~g~ 1463 (1496)
|||++|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|| |+|+|+++.+.. ||+|++|++|++++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999987643 7899 999999999865 99999999999999999
Q ss_pred hhhHhhc
Q 039402 1464 PANLLEN 1470 (1496)
Q Consensus 1464 p~~Ll~~ 1470 (1496)
+++++++
T Consensus 247 ~~~~~~~ 253 (279)
T 2ihy_A 247 VEDILTS 253 (279)
T ss_dssp HHHHCSH
T ss_pred HHHHhcc
Confidence 9999753
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=401.16 Aligned_cols=217 Identities=21% Similarity=0.386 Sum_probs=191.9
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++|++++|.. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+.+ +++++
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 3899999999964 3599999999999999999999999999999999999999999999999999887654 57899
Q ss_pred EEccccccccc-chhhccCCC-C--CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPL-E--EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~-~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
+|||++.+|.. |+++|+... . ..+ ++++.++++.+++.+...+.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALARA 147 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999976 999999642 1 222 246788999999876655444 4689999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCc
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s 1473 (1496)
|+++|++|+||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|+++++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 227 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKN 227 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence 9999999999999999999999999999988653 7899999999999865 999999999999999999999988776
Q ss_pred HHH
Q 039402 1474 SFS 1476 (1496)
Q Consensus 1474 ~F~ 1476 (1496)
.|.
T Consensus 228 ~~~ 230 (359)
T 2yyz_A 228 MFV 230 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=401.64 Aligned_cols=218 Identities=25% Similarity=0.431 Sum_probs=191.9
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
..|+++|++++|+.+ ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+. .|++|
T Consensus 13 ~~l~~~~l~~~y~g~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 89 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG-ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNV 89 (355)
T ss_dssp EEEEEEEEEECCTTS-TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSE
T ss_pred ceEEEEEEEEEEcCC-CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcE
Confidence 479999999999322 359999999999999999999999999999999999999999999999999987654 47789
Q ss_pred EEEccccccccc-chhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
++|||++.+|.. |+++|+... ...+ ++++.++|+.+++.+...+.| .+||||||||++|||
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalAr 158 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALAR 158 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999999999986 999999631 1122 356788999999876654444 468999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCC
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKS 1472 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~ 1472 (1496)
||+++|+||+||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|+++++++.
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 238 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988653 7899999999999876 99999999999999999999998876
Q ss_pred cHH
Q 039402 1473 SSF 1475 (1496)
Q Consensus 1473 s~F 1475 (1496)
..|
T Consensus 239 ~~~ 241 (355)
T 1z47_A 239 TLF 241 (355)
T ss_dssp SHH
T ss_pred chH
Confidence 665
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=403.91 Aligned_cols=214 Identities=25% Similarity=0.337 Sum_probs=196.9
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++|++++|+. +++++|+|+||+|++||+++|+|||||||||||++|+|+++ ++|+|.++|+
T Consensus 18 ~~i~~~~l~~~y~~-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp CCEEEEEEEEESSS-SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CeEEEEEEEEEecC-CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 46999999999953 24689999999999999999999999999999999999998 9999999983
Q ss_pred eEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 039402 683 KAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762 (1496)
Q Consensus 683 ~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1496)
++||+|++.+|..|++||+.+.....+++..++++.+++.+.++..|.+.+|.++++|.+|||||||||+|||||+.+|+
T Consensus 96 ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~ 175 (390)
T 3gd7_A 96 FGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 175 (390)
T ss_dssp EEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCC
Confidence 69999999999999999999766677888899999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
++|||||||+||+.....+.+ .++...+++|+|+|||+++.+..||+|++|++|+|++.|+++++.+..
T Consensus 176 lLLLDEPts~LD~~~~~~l~~-~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 176 ILLLDEPSAHLDPVTYQIIRR-TLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp EEEEESHHHHSCHHHHHHHHH-HHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred EEEEeCCccCCCHHHHHHHHH-HHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999888865 445555689999999999888889999999999999999999998754
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=402.44 Aligned_cols=217 Identities=22% Similarity=0.362 Sum_probs=191.2
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++|++++|.. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+.+ +++|+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence 4899999999954 3599999999999999999999999999999999999999999999999999887754 57899
Q ss_pred EEccccccccc-chhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
+|||++.+|.. |+++|+... ...+ ++++.++++.+++.+...+.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalArA 147 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-----------WQLSGGQQQRVAIARA 147 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999986 999999631 1122 345788999998876544443 4689999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCc
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s 1473 (1496)
|+++|++|+||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|++.|+|+++++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~ 227 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKY 227 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999988653 7899999999998865 999999999999999999999988776
Q ss_pred HHH
Q 039402 1474 SFS 1476 (1496)
Q Consensus 1474 ~F~ 1476 (1496)
.|.
T Consensus 228 ~~~ 230 (362)
T 2it1_A 228 KFV 230 (362)
T ss_dssp HHH
T ss_pred hHH
Confidence 653
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=399.96 Aligned_cols=215 Identities=23% Similarity=0.362 Sum_probs=190.6
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|.. . +|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+. .|++|++
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 789999999964 3 9999999999999999999999999999999999999999999999999987554 4778999
Q ss_pred Eccccccccc-chhhccCCC----CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccC
Q 039402 1326 IPQDPVMFEG-TVRSNLDPL----EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1400 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp~----~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~ 1400 (1496)
|||++.+|.. |+++|+... +...++++.++|+.+++.+...+.| .+||||||||++|||||+++
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHHHcC
Confidence 9999999987 999999631 1122377889999999876544443 46899999999999999999
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCcHHH
Q 039402 1401 SKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFS 1476 (1496)
Q Consensus 1401 ~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~ 1476 (1496)
|++|+||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|+++++++...|.
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~ 224 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHHH
Confidence 999999999999999999999999988643 7899999999998865 999999999999999999999988776663
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=400.05 Aligned_cols=216 Identities=20% Similarity=0.348 Sum_probs=186.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+++|.. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+.+ +++|+
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence 4999999999964 3599999999999999999999999999999999999999999999999999887654 57899
Q ss_pred EEccccccccc-chhhccCCCC---CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPLE---EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
+|||++.+|.. |+++|+.... ..+ ++++.++|+.++|.+...+.| .+||||||||++||||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalArA 155 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARA 155 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999976 9999996421 122 245788999999876654444 4789999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCc
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s 1473 (1496)
|+++|++|+||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|+++++++..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 235 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 235 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence 9999999999999999999999999999988653 7899999999999865 999999999999999999999988776
Q ss_pred HH
Q 039402 1474 SF 1475 (1496)
Q Consensus 1474 ~F 1475 (1496)
.|
T Consensus 236 ~~ 237 (372)
T 1v43_A 236 VF 237 (372)
T ss_dssp HH
T ss_pred HH
Confidence 66
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=402.85 Aligned_cols=219 Identities=20% Similarity=0.326 Sum_probs=191.4
Q ss_pred eEEEEeEEeEeCCCCCc--cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC---hHHH
Q 039402 1245 KIDLLDLQVRYAPQMPL--VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LHDL 1319 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~--vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~L 1319 (1496)
.|+++||+++|.. .. +|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+ ....
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 3899999999964 34 999999999999999999999999999999999999999999999999987521 3345
Q ss_pred hcccEEEccccccccc-chhhccCCC-C--CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 039402 1320 RSRLSIIPQDPVMFEG-TVRSNLDPL-E--EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1391 (1496)
Q Consensus 1320 R~~i~iIpQdp~LF~g-TIR~NLdp~-~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll 1391 (1496)
|++|++|||++.+|.. |+++|+... . ..+ ++++.++|+.++|.+...+.| .+||||||||+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHH
Confidence 7889999999999987 999999632 1 122 346788999999876654444 46899999999
Q ss_pred HHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1392 CLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1392 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
+|||||+++|++|+||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|++++
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999988643 7899999999999876 9999999999999999999999
Q ss_pred hcCCcHHH
Q 039402 1469 ENKSSSFS 1476 (1496)
Q Consensus 1469 ~~~~s~F~ 1476 (1496)
+++...|.
T Consensus 230 ~~p~~~~~ 237 (353)
T 1oxx_K 230 DNPVSIQV 237 (353)
T ss_dssp HSCSSHHH
T ss_pred hCcccHHH
Confidence 88766653
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=382.32 Aligned_cols=207 Identities=21% Similarity=0.276 Sum_probs=187.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
-|+++||+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|+ |+|.+||.++...+...+|++++
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 4899999986 4999999999999999999999999999999999999999 99999999998888888999999
Q ss_pred EEccccccccc-chhhccCCCC--CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPLE--ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS 1401 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~~--~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~ 1401 (1496)
|+||+|.+|.+ |+++|+.... ..+++++.++++.+++.+...+ ...+||||||||++|||||+++|
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----------STNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTS-----------BGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999998876 9999996432 1247788999999998765332 34579999999999999999999
Q ss_pred C-------EEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhc-ccCEEEEEeCCeEeEecChhhHhh
Q 039402 1402 K-------ILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVI-DSDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1402 ~-------ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~-~~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
+ +|+||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+. .||+|++|++|++++.|+|+++++
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9 999999999999999999999998864 4789999999999985 599999999999999999999975
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=383.52 Aligned_cols=208 Identities=22% Similarity=0.290 Sum_probs=175.3
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc--cCCCccEEEECCeeCCCCChHHH-hc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI--VEPAAGQILIDGIDISLIGLHDL-RS 1321 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl--~ep~~G~I~IDG~dI~~i~l~~L-R~ 1321 (1496)
.|+++||+++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++|++|+|.+||.|+...+.++. |.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 4899999999964 4699999999999999999999999999999999999 88999999999999998887765 45
Q ss_pred ccEEEccccccccc-chhhccCCC-----CC-Cc----HHHHHHHHHHcCCc-HHHHhccCCcccccccCCCC-CCchHH
Q 039402 1322 RLSIIPQDPVMFEG-TVRSNLDPL-----EE-ST----DEQIWEALDKCQLG-DEVRKKEGKLDSKVTENGEN-WSMGQR 1388 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~g-TIR~NLdp~-----~~-~s----d~eI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~n-LS~GQr 1388 (1496)
.++++||+|.+|.+ |+++|+... +. .. ++++.++++++++. +... .++ .. ||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~~~----~~~LSgGqk 149 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS-------RYL----NEGFSGGEK 149 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG-------SBT----TCC----HH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc-------CCc----ccCCCHHHH
Confidence 69999999999987 999998521 11 11 24567788888874 3322 222 34 999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc--cCEEEEEeCCeEeEecChh
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID--SDLVLLLNHGLIEEFDNPA 1465 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~--~DrIlVL~~G~IvE~g~p~ 1465 (1496)
||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|+|+
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999999875 47899999999999886 5999999999999999998
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=381.06 Aligned_cols=202 Identities=25% Similarity=0.414 Sum_probs=171.5
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++|++++|+. ..++|+||||+|++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 6 ~~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 6 YILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp EEEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHH
T ss_pred cEEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHh
Confidence 36899999999952 346999999999999999999999999999999999999999999999883
Q ss_pred --eEEEccCC--ccCCCcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 683 --KAYVAQSP--WIQSGKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 683 --~~yv~Q~~--~i~~~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
+|||+|+| .++..|++|||.|+.. .+. ++.+++++.+++.+ ...+.+.+|||||||||
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv 152 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRV 152 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-----------GTTSBGGGSCHHHHHHH
T ss_pred CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCCcccCCHHHHHHH
Confidence 69999998 4678899999998632 232 23444555555432 23466789999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh--CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHH
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL--SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 828 (1496)
+|||||+.+|+++|||||||+||+.+...+++. +..+. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~-l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~ 231 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL-LVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHH-HHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHH-HHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999988764 44433 48999999999999865 999999999999999999998
Q ss_pred Hhc
Q 039402 829 INS 831 (1496)
Q Consensus 829 ~~~ 831 (1496)
...
T Consensus 232 ~~~ 234 (275)
T 3gfo_A 232 FAE 234 (275)
T ss_dssp THH
T ss_pred hcC
Confidence 764
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-41 Score=398.81 Aligned_cols=216 Identities=20% Similarity=0.385 Sum_probs=189.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC------CChHH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL------IGLHD 1318 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~------i~l~~ 1318 (1496)
.|+++||+++|.. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.. ++.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 4899999999954 359999999999999999999999999999999999999999999999999876 443
Q ss_pred HhcccEEEccccccccc-chhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 039402 1319 LRSRLSIIPQDPVMFEG-TVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1390 (1496)
Q Consensus 1319 LR~~i~iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQl 1390 (1496)
.+++|++|||++.+|.. |+++|+... ...+ ++++.++|+.++|.+...+.| .+||||||||
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QR 147 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQR 147 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHHHHHH
Confidence 36789999999999975 999999631 1122 345788899998876544443 4689999999
Q ss_pred HHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhH
Q 039402 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1391 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
++|||||+++|++|+||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|+++
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988653 7899999999999875 999999999999999999999
Q ss_pred hhcCCcHH
Q 039402 1468 LENKSSSF 1475 (1496)
Q Consensus 1468 l~~~~s~F 1475 (1496)
++++...|
T Consensus 228 ~~~p~~~~ 235 (372)
T 1g29_1 228 YDKPANTF 235 (372)
T ss_dssp HHSCSBHH
T ss_pred HhCcccHH
Confidence 98877766
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-41 Score=376.18 Aligned_cols=201 Identities=27% Similarity=0.346 Sum_probs=164.2
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 618 LDIVDGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 68999999996322 246999999999999999999999999999999999999999999999982
Q ss_pred ---eEEEccCCccCCC-cHHHHhccCC------CCCHHH----HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 ---KAYVAQSPWIQSG-KIEDNILFGK------EMNRER----YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 ---~~yv~Q~~~i~~~-ti~eNI~~g~------~~~~~~----~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++||+|+|.++.. |++||+.++. ....+. ..++++.+++.+. ..++.+.+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----------FANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG----------GTTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh----------hhhCChhhCCHHHH
Confidence 7999999998765 9999998742 222222 2223333333211 12567889999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccccCCEEEEEeCCeEEEecChHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~ 827 (1496)
|||+|||||+++|+++|||||||+||+.+...+++.+.+...+ |+|+|+|||+++....||+|++|++|++++.++.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 9999999999999999999999999999999987644333233 899999999999776799999999999999988766
Q ss_pred H
Q 039402 828 L 828 (1496)
Q Consensus 828 l 828 (1496)
+
T Consensus 232 ~ 232 (235)
T 3tif_A 232 F 232 (235)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=380.41 Aligned_cols=214 Identities=21% Similarity=0.270 Sum_probs=181.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc--cCCCccEEEECCeeCCCCChHHH-hc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI--VEPAAGQILIDGIDISLIGLHDL-RS 1321 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl--~ep~~G~I~IDG~dI~~i~l~~L-R~ 1321 (1496)
.|+++||+++|.. .++|+||||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.|+...+.... |.
T Consensus 20 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 5999999999953 4699999999999999999999999999999999999 57899999999999988887665 45
Q ss_pred ccEEEccccccccc-chhhccCCC--------C--CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch
Q 039402 1322 RLSIIPQDPVMFEG-TVRSNLDPL--------E--EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1386 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~g-TIR~NLdp~--------~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~G 1386 (1496)
+++++||+|.+|.+ |+++|+... . ..+ ++++.++++++++.+.. .+.++ +.+||||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~~~~~---~~~LSgG 168 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDL------LTRSV---NVGFSGG 168 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTT------TTSBT---TTTCCHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhH------hcCCc---ccCCCHH
Confidence 69999999999987 899988521 1 122 23567778887764211 12221 1259999
Q ss_pred HHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc--cCEEEEEeCCeEeEecC
Q 039402 1387 QRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID--SDLVLLLNHGLIEEFDN 1463 (1496)
Q Consensus 1387 QrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~--~DrIlVL~~G~IvE~g~ 1463 (1496)
||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|+
T Consensus 169 q~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 248 (267)
T 2zu0_C 169 EKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248 (267)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999999998864 47899999999999876 89999999999999999
Q ss_pred hhhHhh
Q 039402 1464 PANLLE 1469 (1496)
Q Consensus 1464 p~~Ll~ 1469 (1496)
|+++..
T Consensus 249 ~~~~~~ 254 (267)
T 2zu0_C 249 FTLVKQ 254 (267)
T ss_dssp TTHHHH
T ss_pred HHHHhh
Confidence 998753
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=378.78 Aligned_cols=206 Identities=24% Similarity=0.343 Sum_probs=181.7
Q ss_pred EEEEeEEeEeCCC--CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1246 IDLLDLQVRYAPQ--MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~--~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
|+++|++++|+.. ..++|+|+||+|+ ||++||+|+||||||||+++|.|++ |++|+|.+||.++... .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 1359999999999 9999999999999999999999999 9999999999998765 34 7889
Q ss_pred E-EEcccccccccchhhccCCC---CCCcHHHHHHHHHHcCCc-HHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc
Q 039402 1324 S-IIPQDPVMFEGTVRSNLDPL---EESTDEQIWEALDKCQLG-DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL 1398 (1496)
Q Consensus 1324 ~-iIpQdp~LF~gTIR~NLdp~---~~~sd~eI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL 1398 (1496)
+ ++||+|.+ ..|+++|+... ....++++.+++++.++. +... ....+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR-----------RKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGG-----------SBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 88999999632 134577888999998886 4432 234579999999999999999
Q ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhc-ccC-EEEEEeCCeEeEecChhhHhhc
Q 039402 1399 KRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVI-DSD-LVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1399 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~-~~D-rIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
++|++|+|||||++||+.+.+.+.+.|++..+ |||+|+|+++.+. .|| +|++|++|++++.|+|+++.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999987644 9999999999986 499 9999999999999999999853
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=390.30 Aligned_cols=206 Identities=23% Similarity=0.348 Sum_probs=174.0
Q ss_pred CccEEEEeeEEEecCCC-CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------
Q 039402 615 ETALDIVDGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----------- 682 (1496)
Q Consensus 615 ~~~i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~----------- 682 (1496)
...++++|++++|.... ..++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 34699999999996432 246899999999999999999999999999999999999999999999883
Q ss_pred -----eEEEccCCccCCC-cHHHHhccCC---CCCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHH
Q 039402 683 -----KAYVAQSPWIQSG-KIEDNILFGK---EMNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 749 (1496)
Q Consensus 683 -----~~yv~Q~~~i~~~-ti~eNI~~g~---~~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 749 (1496)
+|||+|++.++.. ||+|||.|+. ..++ ++..++++.++|.+ ..++...+|||||||
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~-----------~~~~~~~~LSGGqkQ 170 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-----------KHDSYPSNLSGGQKQ 170 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG-----------GTTCCTTTSCHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHH
Confidence 6999999988754 9999999863 2222 23444555555532 235677899999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChH
Q 039402 750 RIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 826 (1496)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 826 (1496)
||+|||||+.+|+++||||||||||+.+...+++. ++.+ . .|+|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~l-L~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ 249 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILEL-LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 249 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999764 4443 2 48999999999999865 9999999999999999999
Q ss_pred HHHhcC
Q 039402 827 DLINSG 832 (1496)
Q Consensus 827 ~l~~~~ 832 (1496)
+++...
T Consensus 250 ev~~~p 255 (366)
T 3tui_C 250 EVFSHP 255 (366)
T ss_dssp HHHSSC
T ss_pred HHHhCC
Confidence 998654
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-40 Score=387.16 Aligned_cols=203 Identities=33% Similarity=0.506 Sum_probs=174.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++++|. ++++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 589999999995 467999999999999999999999999999999999999999999999873
Q ss_pred -eEEEccCCccCC-CcHHHHhccCCCC---C----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 -KAYVAQSPWIQS-GKIEDNILFGKEM---N----RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 -~~yv~Q~~~i~~-~ti~eNI~~g~~~---~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
+|||+|++.++. .||+|||.|+... . +++.+++++.++|.+ ..+++..+|||||||||+|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE-----------LAGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG-----------GTTSCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHHHHH
Confidence 599999998875 5999999998542 1 234445555555532 2356778999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
||||+.+|+++|||||||+||+.....+.+.+.+.. ..|+|+|+||||++++.. ||+|++|++|+|++.|+++++...
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999876655543 358999999999998765 999999999999999999999865
Q ss_pred Cc
Q 039402 832 GT 833 (1496)
Q Consensus 832 ~~ 833 (1496)
..
T Consensus 230 p~ 231 (359)
T 3fvq_A 230 PA 231 (359)
T ss_dssp CS
T ss_pred cc
Confidence 43
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=368.46 Aligned_cols=201 Identities=23% Similarity=0.347 Sum_probs=168.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 6 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEEC---CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 589999999995 357999999999999999999999999999999999999999999999872
Q ss_pred eEEEccCCccCCC-cHHHHhccCC-C-CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHH
Q 039402 683 KAYVAQSPWIQSG-KIEDNILFGK-E-MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 755 (1496)
Q Consensus 683 ~~yv~Q~~~i~~~-ti~eNI~~g~-~-~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR 755 (1496)
++|++|++.++.. |++||+.++. . .+. ++.+++++.. + |.....++++.+|||||||||+|||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~---------~-~l~~~~~~~~~~LSgGq~qrv~lAr 152 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF---------P-RLKERLKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHC---------H-HHHTTTTSBSSSSCHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHc---------c-cHhhHhcCChhhCCHHHHHHHHHHH
Confidence 7999999998876 9999999864 1 111 1222233322 1 1122346778899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 039402 756 ALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 756 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
||+++|+++||||||++||+.+.+.+.+.+.+...+|+|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 153 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999999999999999999887644333336899999999998865 599999999999999999988864
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=370.14 Aligned_cols=201 Identities=31% Similarity=0.388 Sum_probs=170.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 24 ~l~i~~l~~~y~---~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 599999999995 357999999999999999999999999999999999999999999999882
Q ss_pred -eEEEccCCccCCC-cHHHHhccCC----CCCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 683 -KAYVAQSPWIQSG-KIEDNILFGK----EMNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 683 -~~yv~Q~~~i~~~-ti~eNI~~g~----~~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
++||+|++.++.. |++||+.++. .... ++.+++++.+++.+ ...+.+.+|||||||||+
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD-----------KAHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------HhcCChhhCCHHHHHHHH
Confidence 6999999988765 9999998852 2222 23344445444432 235677899999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
|||||+.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999988876443333458999999999999875 999999999999999999998754
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-40 Score=372.49 Aligned_cols=200 Identities=25% Similarity=0.356 Sum_probs=175.2
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+++|+++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|. +|++++
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 48999999999623 4699999999999999999999999999999999999999999998 367899
Q ss_pred EEccccccc-ccchhhccCCCC--------CC---cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1325 IIPQDPVMF-EGTVRSNLDPLE--------ES---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1325 iIpQdp~LF-~gTIR~NLdp~~--------~~---sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
++||+|.+| ..|+++|+.... .. .++++.++++.+++.+...+ ...+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKR-----------EFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcC-----------ChhhCCHHHHHHHH
Confidence 999999887 569999996421 01 13568889999988765433 24579999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhc-ccCEEEEEeCCeEeEecChhhHhh
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVI-DSDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
|||||+++|+|||||||||+||+.+.+.+.+.|++..+ ++|||+|+|+++.+. .||+|++|++|+ ++.|+|+++++
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999999999999999999999999999999988753 799999999999985 499999999999 99999999975
Q ss_pred c
Q 039402 1470 N 1470 (1496)
Q Consensus 1470 ~ 1470 (1496)
+
T Consensus 218 ~ 218 (253)
T 2nq2_C 218 S 218 (253)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=387.17 Aligned_cols=202 Identities=31% Similarity=0.445 Sum_probs=172.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEE
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~y 685 (1496)
.++++|++++|. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEE
Confidence 489999999995 467999999999999999999999999999999999999999999999984 699
Q ss_pred EccCCccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 686 VAQSPWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 686 v~Q~~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
|+|++.++. .||+|||.|+.. .++ ++.+++++.+++.+ ..+++..+|||||||||+|||||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~r~p~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-----------LLDRKPKALSGGQRQRVAIGRTL 148 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG-----------GTTCCGGGSCHHHHHHHHHHHHH
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhHCCHHHHHHHHHHHHH
Confidence 999999875 599999999742 333 23444555554432 23567789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
+.+|+++|||||||+||+.....+.+.+.+...+ |+|+|+||||++++.. ||+|++|++|+|++.|+++++....
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 9999999999999999999999987655443333 8999999999988754 9999999999999999999998654
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=368.88 Aligned_cols=202 Identities=27% Similarity=0.421 Sum_probs=170.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 6 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 589999999995 357999999999999999999999999999999999999999999999872
Q ss_pred ------------eEEEccCCccCCC-cHHHHhccCC----CCCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCC
Q 039402 683 ------------KAYVAQSPWIQSG-KIEDNILFGK----EMNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGI 741 (1496)
Q Consensus 683 ------------~~yv~Q~~~i~~~-ti~eNI~~g~----~~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~ 741 (1496)
++||+|++.++.. |++||+.++. ..+. ++..++++.+++.+.+ ..++..
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~ 152 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPV 152 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchh----------hcCCcc
Confidence 6899999988765 9999998852 2222 2344455555554320 346678
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEE
Q 039402 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKIT 820 (1496)
Q Consensus 742 ~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 820 (1496)
+|||||||||+|||||+.+|+++|||||||+||+.+...+.+.+.....+|+|+|+|||+++.+.. ||+|++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999988876443333458999999999999865 9999999999999
Q ss_pred EecChHHHHhc
Q 039402 821 QAGKYNDLINS 831 (1496)
Q Consensus 821 ~~G~~~~l~~~ 831 (1496)
+.|+++++.+.
T Consensus 233 ~~g~~~~~~~~ 243 (262)
T 1b0u_A 233 EEGDPEQVFGN 243 (262)
T ss_dssp EEECHHHHHHS
T ss_pred EeCCHHHHHhC
Confidence 99999998754
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=368.55 Aligned_cols=197 Identities=23% Similarity=0.339 Sum_probs=166.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 7 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEEC---CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 589999999995 357999999999999999999999999999999999999999999999873
Q ss_pred eEEEccCCccCC-CcHHHHhccCCCC----------------C-H---HHHHHHHHHhchhhHHHhccCCCcccccCCCC
Q 039402 683 KAYVAQSPWIQS-GKIEDNILFGKEM----------------N-R---ERYNAVLDACSLKKDLEILSFGDQTVIGERGI 741 (1496)
Q Consensus 683 ~~yv~Q~~~i~~-~ti~eNI~~g~~~----------------~-~---~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~ 741 (1496)
++||+|++.++. .|++||+.++... + . ++.+++++.+++ ....++++.
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL-----------SHLYDRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTC-----------GGGTTSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCC-----------chhhCCCch
Confidence 699999998775 6999999986321 1 1 122233333332 233467788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccc-cCCEEEEEeCCeEE
Q 039402 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLP-AADLILVMKDGKIT 820 (1496)
Q Consensus 742 ~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~ 820 (1496)
+|||||||||+|||||+++|+++|||||||+||+.+...+.+.+.+...+|+|||+|||+++.+. .||+|++|++|+++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999887644333345899999999999986 49999999999999
Q ss_pred EecChHH
Q 039402 821 QAGKYND 827 (1496)
Q Consensus 821 ~~G~~~~ 827 (1496)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999888
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-39 Score=366.25 Aligned_cols=204 Identities=24% Similarity=0.373 Sum_probs=172.7
Q ss_pred cEEEEeeEEEecCCCC--CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe----------eE
Q 039402 617 ALDIVDGNFSWDISSH--NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----------KA 684 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~--~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~----------~~ 684 (1496)
.++++|++++|+.++. +++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|. ++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 3789999999952111 46999999999999999999999999999999999999999999999983 69
Q ss_pred EEccCC--ccCCCcHHHHhccCCC------CCHHHHHHHHHHhchh--hHHHhccCCCcccccCCCCCCChHHHHHHHHH
Q 039402 685 YVAQSP--WIQSGKIEDNILFGKE------MNRERYNAVLDACSLK--KDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754 (1496)
Q Consensus 685 yv~Q~~--~i~~~ti~eNI~~g~~------~~~~~~~~v~~~~~l~--~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 754 (1496)
||+|+| .+++.|++||+.++.. ..+++..++++.+++. +. ..+...+|||||||||+||
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSF-----------KDRVPFFLSGGEKRRVAIA 150 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHH-----------TTCCGGGSCHHHHHHHHHH
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCccc-----------ccCChhhCCHHHHHHHHHH
Confidence 999997 4677899999998742 1245566777777665 32 2355689999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
|||+++|+++||||||++||+.+...+.+.+.+...+|+|+|+|||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999998876443333458999999999999875 999999999999999999888654
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=362.48 Aligned_cols=194 Identities=26% Similarity=0.304 Sum_probs=162.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 4 ~l~~~~l~~~y~---~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEEC---CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 489999999995 357999999999999999999999999999999999999999999999872
Q ss_pred ---eEEEccCCccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 683 ---KAYVAQSPWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 683 ---~~yv~Q~~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
++||+|++.++. .|++||+.++.. ... ++..++++.+++. ....++..+|||||||||
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-----------DKLSRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-----------TCTTCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHHH
Confidence 799999998875 599999988531 221 2233344443332 223567789999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecC
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGK 824 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~ 824 (1496)
+||||++++|+++||||||++||+.+...+.+.+.....+|+|+|+|||+++.+..||++++|++|++++.|+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999887644333345899999999998886699999999999999886
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=365.08 Aligned_cols=201 Identities=20% Similarity=0.279 Sum_probs=170.7
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------e
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------K 683 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------~ 683 (1496)
..++++|++++|. ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|. +
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE
Confidence 4699999999995 357999999999999999999999999999999999999999999999883 6
Q ss_pred EEEccCCccCCC-cHHHHhccCC---CCCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHH
Q 039402 684 AYVAQSPWIQSG-KIEDNILFGK---EMNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 755 (1496)
Q Consensus 684 ~yv~Q~~~i~~~-ti~eNI~~g~---~~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR 755 (1496)
+|++|++.++.. |++||+.++. .... ++..++++.+++.+. ..+++.+|||||||||+|||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK-----------IKDRVSTYSKGMVRKLLIAR 159 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGG-----------GGSBGGGCCHHHHHHHHHHH
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchH-----------hcCChhhCCHHHHHHHHHHH
Confidence 999999988765 9999998753 1222 234455555555322 34567899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 756 ALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 756 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
||+.+|+++|||||||+||+.+...+.+.+.+...+|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999998876443333468999999999999876 99999999999999999988864
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-39 Score=368.42 Aligned_cols=200 Identities=26% Similarity=0.399 Sum_probs=170.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++|+++.|. ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|+
T Consensus 10 ~~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 10 ALLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred ceEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 3689999999995 467999999999999999999999999999999999999999999999984
Q ss_pred eEEEccCCcc-CCCcHHHHhccCCC-----CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH
Q 039402 683 KAYVAQSPWI-QSGKIEDNILFGKE-----MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 756 (1496)
Q Consensus 683 ~~yv~Q~~~i-~~~ti~eNI~~g~~-----~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 756 (1496)
++|++|++.+ ++.|++||+.++.. .++++.+++++.+++.+ ...++..+|||||||||+||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~QRv~iAra 155 (266)
T 4g1u_C 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA-----------LAQRDYRVLSGGEQQRVQLARV 155 (266)
T ss_dssp EEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST-----------TTTSBGGGCCHHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHHHHHHHHHHHH
Confidence 5999999877 56799999998743 22344555666555432 1245567899999999999999
Q ss_pred Hcc------CCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHH
Q 039402 757 LYQ------DSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 757 l~~------~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 827 (1496)
|++ +|+++||||||||||+.+...+++. +..+ .+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 156 L~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~-l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~ 234 (266)
T 4g1u_C 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRL-LRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEE 234 (266)
T ss_dssp HHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHH-HHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HhcccccCCCCCEEEEeCccccCCHHHHHHHHHH-HHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999 9999999999999999999988764 4443 33 5799999999999864 99999999999999999999
Q ss_pred HHh
Q 039402 828 LIN 830 (1496)
Q Consensus 828 l~~ 830 (1496)
+..
T Consensus 235 ~~~ 237 (266)
T 4g1u_C 235 VLN 237 (266)
T ss_dssp HCC
T ss_pred HhC
Confidence 864
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=379.27 Aligned_cols=202 Identities=25% Similarity=0.349 Sum_probs=172.1
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEE
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~y 685 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM 79 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEE
Confidence 388999999995 357999999999999999999999999999999999999999999999883 699
Q ss_pred EccCCccCC-CcHHHHhccCCCC---C----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 686 VAQSPWIQS-GKIEDNILFGKEM---N----RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 686 v~Q~~~i~~-~ti~eNI~~g~~~---~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
|+|++.++. .|++|||.|+... . +++.+++++.++|.+ ...++..+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~r~~~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN-----------LLDRKPTQLSGGQQQRVALARAL 148 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHHHHHHHHH
Confidence 999998875 4999999997532 1 134455555555532 23466789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
+.+|+++|||||||+||+.....+.+.+.+...+ |+|+|+|||+++++. .||+|++|++|+|++.|+++++.+..
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999998887654433333 899999999999875 59999999999999999999997654
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=379.61 Aligned_cols=204 Identities=26% Similarity=0.386 Sum_probs=172.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eE
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 684 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~ 684 (1496)
..++++|++++|+ +++++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++
T Consensus 13 ~~l~~~~l~~~y~--g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 90 (355)
T 1z47_A 13 MTIEFVGVEKIYP--GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90 (355)
T ss_dssp EEEEEEEEEECCT--TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEE
T ss_pred ceEEEEEEEEEEc--CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEE
Confidence 4699999999993 2357999999999999999999999999999999999999999999999883 69
Q ss_pred EEccCCccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH
Q 039402 685 YVAQSPWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 756 (1496)
Q Consensus 685 yv~Q~~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 756 (1496)
||+|++.++. .|++|||.|+.. ... ++.+++++.+++.+ ...++..+|||||||||+||||
T Consensus 91 ~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~r~~~~LSGGq~QRvalArA 159 (355)
T 1z47_A 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES-----------YANRFPHELSGGQQQRVALARA 159 (355)
T ss_dssp EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHHHHHHHHHHHH
Confidence 9999998876 599999998632 222 23444555554432 2356678999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 039402 757 LYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
|+.+|+++|||||||+||+.....+.+.+.+...+ |+|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+..
T Consensus 160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999887654333233 8999999999998765 9999999999999999999997653
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=362.80 Aligned_cols=200 Identities=27% Similarity=0.367 Sum_probs=169.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccC-CC
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ-SG 695 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~-~~ 695 (1496)
.++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.+...++|++|+|.++ +.
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~ 81 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAY 81 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCC
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCC
Confidence 4899999999951 35799999999999999999999999999999999999999999999888899999999887 66
Q ss_pred cHHHHhccCCC--------CCH---HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 039402 696 KIEDNILFGKE--------MNR---ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIY 764 (1496)
Q Consensus 696 ti~eNI~~g~~--------~~~---~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 764 (1496)
|++||+.++.. ... ++.+++++.+++.+ ...+++.+|||||||||+|||||+.+|+++
T Consensus 82 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~lAraL~~~p~ll 150 (253)
T 2nq2_C 82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH-----------LAKREFTSLSGGQRQLILIARAIASECKLI 150 (253)
T ss_dssp BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG-----------GTTSBGGGSCHHHHHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChH-----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999998641 122 23444555554432 234567899999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 039402 765 LFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 765 lLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
|||||||+||+.+...+.+.+.....+ |+|+|++||+++.+. .||++++|++|+ ++.|+++++.+
T Consensus 151 lLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp EESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 999999999999999887644333334 899999999999985 599999999999 99999988753
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=378.32 Aligned_cols=202 Identities=26% Similarity=0.352 Sum_probs=171.3
Q ss_pred cEEEEeeEEEecCCCCCC--ceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------
Q 039402 617 ALDIVDGNFSWDISSHNP--TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~--~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------ 682 (1496)
.++++|++++|+ +++ +|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+
T Consensus 3 ~l~i~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFK---KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEG---GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEEC---CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 378999999995 356 999999999999999999999999999999999999999999999872
Q ss_pred ----eEEEccCCccCCC-cHHHHhccCCCC---CH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHH
Q 039402 683 ----KAYVAQSPWIQSG-KIEDNILFGKEM---NR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750 (1496)
Q Consensus 683 ----~~yv~Q~~~i~~~-ti~eNI~~g~~~---~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 750 (1496)
++||+|++.++.. |++|||.|+... .. ++.+++++..+|.+ ...++..+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~~~~~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-----------VLNHFPRELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHH
Confidence 6899999988764 999999997532 22 23444555554432 2346678999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHH
Q 039402 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 828 (1496)
|+|||||+.+|+++|||||||+||+.....+.+.+.+...+ |+|+|+|||+++++.. ||+|++|++|++++.|+++++
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999887654433233 8999999999998754 999999999999999999999
Q ss_pred HhcC
Q 039402 829 INSG 832 (1496)
Q Consensus 829 ~~~~ 832 (1496)
.+..
T Consensus 229 ~~~p 232 (353)
T 1oxx_K 229 YDNP 232 (353)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 7654
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-39 Score=379.64 Aligned_cols=202 Identities=29% Similarity=0.371 Sum_probs=170.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEE
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~y 685 (1496)
.++++|++++|. ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL 79 (362)
T ss_dssp CEEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEE
Confidence 388999999995 357999999999999999999999999999999999999999999999883 699
Q ss_pred EccCCccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 686 VAQSPWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 686 v~Q~~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
|+|++.++. .|++|||.|+.. ... ++.+++++.+++. ....++..+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----------~~~~r~~~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-----------KLLNRYPWQLSGGQQQRVAIARAL 148 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-----------TCTTCCGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hHhhCChhhCCHHHHHHHHHHHHH
Confidence 999998876 499999999732 222 2333444444432 123567789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
+.+|+++|||||||+||+.....+.+.+.+...+ |+|+|+|||+++.+. .||+|++|++|+|++.|+++++.+..
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999887654333233 899999999998875 59999999999999999999997653
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=378.41 Aligned_cols=202 Identities=24% Similarity=0.335 Sum_probs=166.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEE
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~y 685 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++|
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEE
Confidence 489999999995 357999999999999999999999999999999999999999999999983 699
Q ss_pred EccCCccCC-CcHHHHhccCCCC---CH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 686 VAQSPWIQS-GKIEDNILFGKEM---NR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 686 v~Q~~~i~~-~ti~eNI~~g~~~---~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
|+|++.++. .|++|||.|+... .+ ++.+++++.++|.+ ...++..+|||||||||+|||||
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~r~~~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-----------LLNRYPAQLSGGQRQRVAVARAI 156 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-----------GTTSCTTTCCSSCHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHH
Confidence 999998875 5999999998542 22 23444455544432 23567789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
+.+|+++|||||||+||+.....+.+.+.+...+ |+|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999887654433333 899999999998875 59999999999999999999997654
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=359.41 Aligned_cols=196 Identities=27% Similarity=0.387 Sum_probs=164.5
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~yv 686 (1496)
++++|++++|+ + +|+|+||++++ |+++|+||||||||||+++|+|.++|++|+|.++|. ++|+
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence 67899999994 1 59999999999 999999999999999999999999999999999883 6899
Q ss_pred ccCCccCCC-cHHHHhccCCCCC-----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 687 AQSPWIQSG-KIEDNILFGKEMN-----RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 687 ~Q~~~i~~~-ti~eNI~~g~~~~-----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
+|++.++.. |++||+.++.... +++.+++++..++. ....++..+||||||||++||||++++
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-----------HLLDRKPARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-----------TTTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-----------HHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999988765 9999999975431 12223333333322 223566789999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
|+++||||||++||+.+.+.+.+. +..+ . .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 145 p~lllLDEPts~LD~~~~~~~~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 145 PRLLLLDEPLSAVDLKTKGVLMEE-LRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHH-HHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999888764 4444 3 38999999999998754 999999999999999999988654
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=376.57 Aligned_cols=200 Identities=29% Similarity=0.418 Sum_probs=170.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~yv 686 (1496)
++++|++++|+ ++ +|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++||
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 68899999995 35 999999999999999999999999999999999999999999999984 6999
Q ss_pred ccCCccCCC-cHHHHhccCCC----CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 039402 687 AQSPWIQSG-KIEDNILFGKE----MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761 (1496)
Q Consensus 687 ~Q~~~i~~~-ti~eNI~~g~~----~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 761 (1496)
+|++.++.. |++|||.|+.. ...++.+++++.++|.+ ...++..+|||||||||+|||||+.+|
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~~~~~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH-----------LLDRNPLTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTT-----------TTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999998865 99999998632 12245555666555532 234667899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 762 DIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 762 ~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
+++|||||||+||+.....+.+.+.+... .|+|+|+|||+++++. .||+|++|++|++++.|+++++.+..
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999988765443323 4899999999998875 49999999999999999999998653
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=357.10 Aligned_cols=195 Identities=23% Similarity=0.380 Sum_probs=168.1
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
..|+++||+++|+. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..|+++
T Consensus 9 ~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred ceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 36999999999964 6999999999999999999999999999999999999999999999999986 368899
Q ss_pred EEEccccccccc-chhhccCCC----C-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPL----E-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~----~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+|+||+|.+|.+ |+++|+... + ...++++.++++.+++.+. .....+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~------------~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL------------KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT------------TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC------------CCChhhCCHHHHHHHHHHHHH
Confidence 999999999987 999998531 1 2236778888988877543 233567999999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEEeCCeE
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLLNHGLI 1458 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL~~G~I 1458 (1496)
+++|++|+|||||++||+.+...+.+.|++.. +++|||+++|+++.+..++..+++..|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCcc
Confidence 99999999999999999999999999998764 36899999999999988444445666766
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-39 Score=368.05 Aligned_cols=201 Identities=26% Similarity=0.352 Sum_probs=167.1
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 20 ~~l~~~~l~~~y~---~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ---GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEEC---CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 4699999999995 357999999999999999999999999999999999999999999999872
Q ss_pred --eEEEccCCcc-CCC--cHHHHhccCCC--------CCH---HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChH
Q 039402 683 --KAYVAQSPWI-QSG--KIEDNILFGKE--------MNR---ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGG 746 (1496)
Q Consensus 683 --~~yv~Q~~~i-~~~--ti~eNI~~g~~--------~~~---~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 746 (1496)
++|++|++.+ +.. |++||+.++.. ..+ ++..++++.+++. ...+++..+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG 165 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-----------AKAQQYIGYLSTG 165 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-----------GGTTSBGGGSCHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-----------hHhcCChhhCCHH
Confidence 6999999864 444 99999998741 122 2233344444432 2235677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEE--EEEccCcCcccc-CCEEEEEeCCeEEEec
Q 039402 747 QKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTV--IYVTHQVEFLPA-ADLILVMKDGKITQAG 823 (1496)
Q Consensus 747 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tv--ilvtH~~~~l~~-~d~i~~l~~G~i~~~G 823 (1496)
|||||+|||||+.+|+++||||||++||+.+.+.+.+.+.+...+|+|+ |+|||+++.+.. ||+|++|++|++++.|
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999998876443322348999 999999999764 9999999999999999
Q ss_pred ChHHHHh
Q 039402 824 KYNDLIN 830 (1496)
Q Consensus 824 ~~~~l~~ 830 (1496)
+++++.+
T Consensus 246 ~~~~~~~ 252 (279)
T 2ihy_A 246 AVEDILT 252 (279)
T ss_dssp EHHHHCS
T ss_pred CHHHHhc
Confidence 9988764
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=377.32 Aligned_cols=202 Identities=27% Similarity=0.379 Sum_probs=170.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 478999999995 357999999999999999999999999999999999999999999999872
Q ss_pred ---eEEEccCCccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 683 ---KAYVAQSPWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 683 ---~~yv~Q~~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
++||+|++.++. .|++|||.|+.. ... ++.+++++.++|.+ ...++..+|||||||||
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~r~~~~LSGGq~QRv 148 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-----------LLNRKPRELSGGQRQRV 148 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-----------GTTCCGGGSCHHHHHHH
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------HhcCCcccCCHHHHHHH
Confidence 689999998875 599999999732 222 23444555554432 23466789999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHH
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLI 829 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~ 829 (1496)
+|||||+.+|+++|||||||+||+.....+.+.+.+...+ |+|+|+|||+++++. .||+|++|++|++++.|+++++.
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 9999999999999999999999999999887654333333 899999999999875 49999999999999999999987
Q ss_pred hcC
Q 039402 830 NSG 832 (1496)
Q Consensus 830 ~~~ 832 (1496)
...
T Consensus 229 ~~p 231 (372)
T 1g29_1 229 DKP 231 (372)
T ss_dssp HSC
T ss_pred hCc
Confidence 653
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-38 Score=355.27 Aligned_cols=195 Identities=23% Similarity=0.347 Sum_probs=167.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~ 683 (1496)
.++++|++++ ++|+|+||++++||+++|+||||||||||+++|+|.++|+ |+|.++|. +
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 4788888875 5899999999999999999999999999999999999999 99999984 6
Q ss_pred EEEccCCccCCC-cHHHHhccCCCC--CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 684 AYVAQSPWIQSG-KIEDNILFGKEM--NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 684 ~yv~Q~~~i~~~-ti~eNI~~g~~~--~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
+|++|++.++.. |++||+.++... ++++..++++..++.+. .++++.+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGG-----------TTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999988754 999999987522 35566667776666432 2456789999999999999999999
Q ss_pred CC-------EEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 039402 761 SD-------IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 761 ~~-------illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
|+ ++||||||++||+.+...+.+.+.....+|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 99999999999999999887644333345899999999999985 599999999999999999988854
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=355.94 Aligned_cols=197 Identities=22% Similarity=0.339 Sum_probs=167.7
Q ss_pred EEEEeeEEEecCC-CCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC----------eeE-E
Q 039402 618 LDIVDGNFSWDIS-SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----------TKA-Y 685 (1496)
Q Consensus 618 i~~~~~~~~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g----------~~~-y 685 (1496)
++++|++++|+.. ..+++|+|+||+++ ||+++|+||||||||||+++|+|.+ |++|+|.++| .++ |
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEE
Confidence 6889999999521 01579999999999 9999999999999999999999999 9999999998 478 9
Q ss_pred EccCCccCCCcHHHHhccCC---CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 039402 686 VAQSPWIQSGKIEDNILFGK---EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762 (1496)
Q Consensus 686 v~Q~~~i~~~ti~eNI~~g~---~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1496)
++|+|.+ +.|++||+.++. ..++++.+++++..++.. ...++++.+||||||||++|||||+.+|+
T Consensus 80 v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 148 (263)
T 2pjz_A 80 LPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE----------EILRRKLYKLSAGQSVLVRTSLALASQPE 148 (263)
T ss_dssp CGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCG----------GGGGSBGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred eCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCCh----------hHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 9999998 889999998853 234555666666655531 23456788999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccc-cCC-EEEEEeCCeEEEecChHHHHh
Q 039402 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLP-AAD-LILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d-~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
++||||||++||+.+.+.+.+ .+..+. . |+|++||+++.+. .|| ++++|++|++++.|+++++.+
T Consensus 149 lllLDEPts~LD~~~~~~l~~-~L~~~~-~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 149 IVGLDEPFENVDAARRHVISR-YIKEYG-K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp EEEEECTTTTCCHHHHHHHHH-HHHHSC-S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred EEEEECCccccCHHHHHHHHH-HHHHhc-C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 999999999999999988875 444443 3 9999999999875 599 999999999999999988864
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=351.08 Aligned_cols=196 Identities=23% Similarity=0.274 Sum_probs=157.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcC--CCCCccEEEEcCe------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE--VPKISGTLKLCGT------------ 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~--~~~~~G~i~~~g~------------ 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|. ++|++|+|.++|.
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASID---GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 478999999995 35799999999999999999999999999999999998 8899999999884
Q ss_pred --eEEEccCCccCCC-cHHHHhccCCC------CC----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCC-CChHHH
Q 039402 683 --KAYVAQSPWIQSG-KIEDNILFGKE------MN----RERYNAVLDACSLKKDLEILSFGDQTVIGERGIN-LSGGQK 748 (1496)
Q Consensus 683 --~~yv~Q~~~i~~~-ti~eNI~~g~~------~~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~-LSGGQk 748 (1496)
++|++|+|.++.. |++||+.++.. .. .++..++++..++..+ ...+...+ ||||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~~LSgGqk 149 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDES----------YLSRYLNEGFSGGEK 149 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGG----------GGGSBTTCC----HH
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChh----------HhcCCcccCCCHHHH
Confidence 4799999988765 99999987521 11 1223334444443211 12334456 999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc--CCEEEEEeCCeEEEecCh
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA--ADLILVMKDGKITQAGKY 825 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~G~~ 825 (1496)
|||+|||||+++|+++|||||||+||+.+...+.+ ++..+ .+|+|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR-GVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHH-HHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 99999999999999999999999999999998875 45544 358999999999999875 599999999999999998
Q ss_pred H
Q 039402 826 N 826 (1496)
Q Consensus 826 ~ 826 (1496)
+
T Consensus 229 ~ 229 (250)
T 2d2e_A 229 E 229 (250)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=353.04 Aligned_cols=200 Identities=22% Similarity=0.295 Sum_probs=161.5
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcC--CCCCccEEEEcCe-----------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE--VPKISGTLKLCGT----------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~--~~~~~G~i~~~g~----------- 682 (1496)
..++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|. ++|++|+|.++|.
T Consensus 19 ~~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 19 HMLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp -CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred ceEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 3599999999994 35799999999999999999999999999999999999 4789999999883
Q ss_pred ---eEEEccCCccCCC-cHHHHhccCC----------CCCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCC-CC
Q 039402 683 ---KAYVAQSPWIQSG-KIEDNILFGK----------EMNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGI-NL 743 (1496)
Q Consensus 683 ---~~yv~Q~~~i~~~-ti~eNI~~g~----------~~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~-~L 743 (1496)
++|++|+|.++.. |++||+.++. ..+.+ +.+++++..++.. ....+... +|
T Consensus 96 ~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~~L 165 (267)
T 2zu0_C 96 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE----------DLLTRSVNVGF 165 (267)
T ss_dssp HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCT----------TTTTSBTTTTC
T ss_pred hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCCh----------hHhcCCcccCC
Confidence 6899999988765 8999987532 11221 2223333333211 11233344 59
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc--CCEEEEEeCCeEE
Q 039402 744 SGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA--ADLILVMKDGKIT 820 (1496)
Q Consensus 744 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~ 820 (1496)
||||||||+|||||+.+|+++|||||||+||+.+.+.+.+ ++..+ .+|+|+|++||+++.+.. ||++++|++|+++
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~-~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~ 244 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVAD-GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 244 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH-HHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999988875 45544 348999999999998865 8999999999999
Q ss_pred EecChHHHH
Q 039402 821 QAGKYNDLI 829 (1496)
Q Consensus 821 ~~G~~~~l~ 829 (1496)
+.|+++++.
T Consensus 245 ~~g~~~~~~ 253 (267)
T 2zu0_C 245 KSGDFTLVK 253 (267)
T ss_dssp EEECTTHHH
T ss_pred EEcCHHHHh
Confidence 999987753
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-37 Score=338.74 Aligned_cols=187 Identities=22% Similarity=0.347 Sum_probs=154.5
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------eEEEc
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAYVA 687 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------~~yv~ 687 (1496)
..++++|++++|+ + ++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|. ++|++
T Consensus 9 ~~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~ 84 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84 (214)
T ss_dssp CEEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEEC
T ss_pred ceEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEe
Confidence 4689999999995 3 7999999999999999999999999999999999999999999999983 69999
Q ss_pred cCCccCCC-cHHHHhccCC-----CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 039402 688 QSPWIQSG-KIEDNILFGK-----EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761 (1496)
Q Consensus 688 Q~~~i~~~-ti~eNI~~g~-----~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 761 (1496)
|+|.++.. |++||+.++. ..++++..++++.+++ ... ++++.+||||||||++||||++.+|
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~-~~~~~~LSgGqkqrv~laraL~~~p 152 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV-----------LDL-KKKLGELSQGTIRRVQLASTLLVNA 152 (214)
T ss_dssp SSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC-----------CCT-TSBGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCC-----------CcC-CCChhhCCHHHHHHHHHHHHHHhCC
Confidence 99988765 9999998752 1224445555554443 223 5678899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeE
Q 039402 762 DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKI 819 (1496)
Q Consensus 762 ~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 819 (1496)
+++||||||++||+.+...+.+.+.+...+|+|+|++||+++.+.. ||+++ +.+|+|
T Consensus 153 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 153 EIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp SEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 9999999999999999998876443322348999999999999877 66665 555665
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-36 Score=348.08 Aligned_cols=217 Identities=15% Similarity=0.173 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCC-cceEEEEeEEeEeCCCCCccceeeeEEeeCC
Q 039402 1195 TLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPS-HGKIDLLDLQVRYAPQMPLVLQGISCTFPGG 1273 (1496)
Q Consensus 1195 ~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~-~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~G 1273 (1496)
..+..+...+..+.....+.+|+.++++.+++... ++..|+. .+.|+++||+++|. .++|+|+||+|++|
T Consensus 56 ~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~------~~~~~~~~~~~i~~~~vs~~y~---~~vL~~vsl~i~~G 126 (305)
T 2v9p_A 56 KHVKDCATMVRHYLRAETQALSMPAYIKARCKLAT------GEGSWKSILTFFNYQNIELITF---INALKLWLKGIPKK 126 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC------SSCCTHHHHHHHHHTTCCHHHH---HHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC------CCCcccccCCeEEEEEEEEEcC---hhhhccceEEecCC
Confidence 44566667777788889999999999876544221 1123543 35699999999996 46999999999999
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhh-ccCCCCCCcHHHH
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRS-NLDPLEESTDEQI 1352 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~-NLdp~~~~sd~eI 1352 (1496)
|++|||||||||||||+++|.|++ +|+|. +++||+|.+|.+|+++ ||....+.++ .+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~---~G~I~------------------~~v~q~~~lf~~ti~~~ni~~~~~~~~-~~ 184 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL---GGSVL------------------SFANHKSHFWLASLADTRAALVDDATH-AC 184 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH---TCEEE------------------CGGGTTSGGGGGGGTTCSCEEEEEECH-HH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc---CceEE------------------EEecCccccccccHHHHhhccCccccH-HH
Confidence 999999999999999999999999 89983 5679999999999998 9876544444 44
Q ss_pred HHHHHHcCCcHHHHh-ccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCC
Q 039402 1353 WEALDKCQLGDEVRK-KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSD 1431 (1496)
Q Consensus 1353 ~~aL~~~~L~~~i~~-lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~ 1431 (1496)
++ ++.. +|+|+| |.+|||||||| |||++++|+||| ||+||+.+++.|++
T Consensus 185 ~~---------~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-------- 234 (305)
T 2v9p_A 185 WR---------YFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-------- 234 (305)
T ss_dssp HH---------HHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------
T ss_pred HH---------HHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------
Confidence 44 4444 678887 78999999999 999999999999 99999999998862
Q ss_pred cEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHH
Q 039402 1432 CTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEY 1482 (1496)
Q Consensus 1432 ~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~ 1482 (1496)
++||++++..||+| ||++|+|++.|+|++| ++.|++++...
T Consensus 235 -----ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~ 275 (305)
T 2v9p_A 235 -----LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRL 275 (305)
T ss_dssp -----GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTT
T ss_pred -----HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHc
Confidence 39999999999999 9999999999999999 47788877543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-33 Score=349.16 Aligned_cols=169 Identities=11% Similarity=0.084 Sum_probs=121.1
Q ss_pred EEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEE
Q 039402 1247 DLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSII 1326 (1496)
Q Consensus 1247 ~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iI 1326 (1496)
+.++++..|+. ...+|.+ .|++|+.++|+|++|||||||++.+++...|. |+ +.+.+.
T Consensus 259 ~~~~l~~g~~~-ld~vL~g---~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~ 316 (525)
T 1tf7_A 259 SNVRVSSGVVR-LDEMCGG---GFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFA 316 (525)
T ss_dssp CCCEECCSCHH-HHHHTTS---SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEE
T ss_pred ccceeecChHH-HHHHhCC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEE
Confidence 44566665532 2234544 99999999999999999999999999998875 53 114455
Q ss_pred cccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEE
Q 039402 1327 PQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILML 1406 (1496)
Q Consensus 1327 pQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiL 1406 (1496)
+||+. .+++.|..-++ .+-++ +...++ ..........||+||+|++++||++..+|++||+
T Consensus 317 ~ee~~---~~l~~~~~~~g-~~~~~----~~~~g~-----------~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llil 377 (525)
T 1tf7_A 317 YEESR---AQLLRNAYSWG-MDFEE----MERQNL-----------LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAI 377 (525)
T ss_dssp SSSCH---HHHHHHHHTTS-CCHHH----HHHTTS-----------EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EeCCH---HHHHHHHHHcC-CCHHH----HHhCCC-----------EEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 66652 23444432111 11111 112222 2222233457999999999999999999999999
Q ss_pred EcCCCCCCHH-----HHHHHHHHHHHhc-CCcEEEEEccCc----------chhcc-cCEEEEEeCCe
Q 039402 1407 DEATASVDTA-----TDNLIQQTLRQHF-SDCTVLTIAHRI----------TSVID-SDLVLLLNHGL 1457 (1496)
Q Consensus 1407 DEaTsslD~~-----Td~~Iq~~I~~~f-~~~TVI~IAHRl----------~ti~~-~DrIlVL~~G~ 1457 (1496)
| ||+++|.. ..+.+.+.++... .++|||+|+|.. ..+.. ||+|++|++|+
T Consensus 378 D-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 378 D-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp E-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred c-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9 99999998 8888888877643 479999999998 66654 99999999997
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-31 Score=335.85 Aligned_cols=199 Identities=21% Similarity=0.262 Sum_probs=164.1
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCcc-CC
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI-QS 694 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i-~~ 694 (1496)
..++++|+++.|+ ...|+++||++++||+++|+||||||||||+++|+|+++|++|+|.+...++|+||++.. ++
T Consensus 356 ~~l~~~~l~~~~~----~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~ 431 (607)
T 3bk7_A 356 TLVEYPRLVKDYG----SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYE 431 (607)
T ss_dssp EEEEECCEEEECS----SCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCS
T ss_pred eEEEEeceEEEec----ceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCC
Confidence 4688999999884 247999999999999999999999999999999999999999999988889999999865 56
Q ss_pred CcHHHHhccC-CC-C-CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC
Q 039402 695 GKIEDNILFG-KE-M-NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS 771 (1496)
Q Consensus 695 ~ti~eNI~~g-~~-~-~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s 771 (1496)
.|++||+.+. .. + +.++..++++..++. ....+...+|||||||||+|||||.++|++|||||||+
T Consensus 432 ~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~ 500 (607)
T 3bk7_A 432 GTVYELLSKIDSSKLNSNFYKTELLKPLGII-----------DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSA 500 (607)
T ss_dssp SBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-----------TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred CcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-----------hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 7999998753 11 1 122233334433332 22356678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH--hCCcEEEEEccCcCcccc-CCEEEEEeC--CeEEEecChHHHHh
Q 039402 772 AVDAHTGSHLFQEVLLGL--LSSKTVIYVTHQVEFLPA-ADLILVMKD--GKITQAGKYNDLIN 830 (1496)
Q Consensus 772 aLD~~~~~~i~~~~~~~~--~~~~tvilvtH~~~~l~~-~d~i~~l~~--G~i~~~G~~~~l~~ 830 (1496)
+||+.+...+.+ +++.+ ..|+|+|+||||++++.. ||+|++|++ |++...|+++++..
T Consensus 501 ~LD~~~~~~l~~-~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 501 YLDVEQRLAVSR-AIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TCCHHHHHHHHH-HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999988875 45444 358999999999999875 999999986 88888999988754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=333.33 Aligned_cols=199 Identities=22% Similarity=0.250 Sum_probs=162.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCcc-CC
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI-QS 694 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i-~~ 694 (1496)
..++++|+++.|. ...|+++||++++||+++|+||||||||||+++|+|.++|++|+|.+...++|++|++.. ++
T Consensus 286 ~~l~~~~l~~~~~----~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~ 361 (538)
T 1yqt_A 286 TLVTYPRLVKDYG----SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYE 361 (538)
T ss_dssp EEEEECCEEEEET----TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCS
T ss_pred eEEEEeeEEEEEC----CEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCC
Confidence 4688999999884 246999999999999999999999999999999999999999999988889999999876 56
Q ss_pred CcHHHHhccC-C-C-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC
Q 039402 695 GKIEDNILFG-K-E-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS 771 (1496)
Q Consensus 695 ~ti~eNI~~g-~-~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s 771 (1496)
.|+.||+... . . .+.++..++++..+ ......+...+|||||||||+|||||.++|++|||||||+
T Consensus 362 ~tv~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~ 430 (538)
T 1yqt_A 362 GTVYELLSKIDASKLNSNFYKTELLKPLG-----------IIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSA 430 (538)
T ss_dssp SBHHHHHHHHHHHHHTCHHHHHHTTTTTT-----------CGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred CcHHHHHHhhhccCCCHHHHHHHHHHHcC-----------ChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 7999988643 1 0 11222222222222 2223466778999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh--CCcEEEEEccCcCcccc-CCEEEEEeC--CeEEEecChHHHHh
Q 039402 772 AVDAHTGSHLFQEVLLGLL--SSKTVIYVTHQVEFLPA-ADLILVMKD--GKITQAGKYNDLIN 830 (1496)
Q Consensus 772 aLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~--G~i~~~G~~~~l~~ 830 (1496)
+||+.+...+.+ +++.+. .|+|||+||||++++.. ||+|++|++ |++...|+++++..
T Consensus 431 ~LD~~~~~~i~~-~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 431 YLDVEQRLAVSR-AIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TCCHHHHHHHHH-HHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred cCCHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999998875 444442 48999999999999875 999999986 78888999988753
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=324.45 Aligned_cols=198 Identities=20% Similarity=0.246 Sum_probs=160.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC-eeEEEccCCcc-C
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-TKAYVAQSPWI-Q 693 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g-~~~yv~Q~~~i-~ 693 (1496)
..++++++++.|. ...|++.||++++||+++|+||||||||||+++|+|.++|++|+|.+++ .++|++|++.. +
T Consensus 268 ~~l~~~~l~~~~~----~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 268 TKMKWTKIIKKLG----DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNY 343 (538)
T ss_dssp EEEEECCEEEEET----TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCC
T ss_pred ceEEEcceEEEEC----CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhccccc
Confidence 4678889998885 2568889999999999999999999999999999999999999999887 47999999764 4
Q ss_pred CCcHHHHhccCCC----CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecC
Q 039402 694 SGKIEDNILFGKE----MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDP 769 (1496)
Q Consensus 694 ~~ti~eNI~~g~~----~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep 769 (1496)
..|++||+.+... ...+..+++++..++. ....+...+|||||||||+|||||.++|++||||||
T Consensus 344 ~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEP 412 (538)
T 3ozx_A 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-----------RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQP 412 (538)
T ss_dssp SSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-----------GCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred CCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-----------HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6799999976421 1122233333333332 234567789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH--hCCcEEEEEccCcCcccc-CCEEEEEeC--CeEEEecChHHHH
Q 039402 770 FSAVDAHTGSHLFQEVLLGL--LSSKTVIYVTHQVEFLPA-ADLILVMKD--GKITQAGKYNDLI 829 (1496)
Q Consensus 770 ~saLD~~~~~~i~~~~~~~~--~~~~tvilvtH~~~~l~~-~d~i~~l~~--G~i~~~G~~~~l~ 829 (1496)
|++||+.+...+.+. ++.+ ..|+|+|+||||++++.. ||+|++|++ |.+...+++.++.
T Consensus 413 T~gLD~~~~~~i~~~-l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 413 SSYLDVEERYIVAKA-IKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp TTTCCHHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred ccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999888754 4443 258999999999999876 999999986 5666677765543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-29 Score=325.28 Aligned_cols=196 Identities=20% Similarity=0.277 Sum_probs=164.8
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
..+...|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.| |+| +|.+... +.++
T Consensus 434 ~~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp CEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred ceeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 46888899999964 359999999999999999999999999999999995 654 6655421 1247
Q ss_pred EEEcccc-ccc-ccchhhccCC-CCCCcHHHHHHHHHHcCCc-HHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1324 SIIPQDP-VMF-EGTVRSNLDP-LEESTDEQIWEALDKCQLG-DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1324 ~iIpQdp-~LF-~gTIR~NLdp-~~~~sd~eI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
++++|++ .++ .-|+++|+.. .... ++++.++|+..++. +...+.+ .+||||||||++|||||+.
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~-----------~~LSGGqkQRvaLArAL~~ 565 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPI-----------SALSGGWKMKLALARAVLR 565 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBG-----------GGCCHHHHHHHHHHHHHHT
T ss_pred EEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCc-----------ccCCHHHHHHHHHHHHHhc
Confidence 8999986 444 4599999853 1112 77899999999995 3333322 4689999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEe-EecChhhHhh
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIE-EFDNPANLLE 1469 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~Iv-E~g~p~~Ll~ 1469 (1496)
+|+||||||||++||+.+.+.+.+.|++ .++|||+|+|+++.+.+ ||+|++|++|+++ ..|+++++++
T Consensus 566 ~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 566 NADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999999999998 68999999999999976 9999999999997 4799999875
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-30 Score=324.36 Aligned_cols=197 Identities=23% Similarity=0.275 Sum_probs=159.6
Q ss_pred EeeEEEecCCCCCCceeeeeEEEeCC-----cEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCcc-CC
Q 039402 621 VDGNFSWDISSHNPTLKDINLKVFHG-----MRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI-QS 694 (1496)
Q Consensus 621 ~~~~~~~~~~~~~~~L~~i~l~i~~G-----~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i-~~ 694 (1496)
++..++|+ +...+++|+||++.+| |+++|+||||||||||+++|+|+++|++|+..-.-.++|++|++.. +.
T Consensus 350 ~~~~~~y~--~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 350 ASRAFSYP--SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp SSSCCEEC--CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCC
T ss_pred cceeEEec--CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCC
Confidence 45567774 2245789999999999 7899999999999999999999999999985434468999999754 56
Q ss_pred CcHHHHhccCC---CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC
Q 039402 695 GKIEDNILFGK---EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS 771 (1496)
Q Consensus 695 ~ti~eNI~~g~---~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s 771 (1496)
.|++||+.... ..+.+...++++..++.+ .......+|||||||||+|||||.++|++|||||||+
T Consensus 428 ~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 428 GTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDD-----------IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp SBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTT-----------TSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred ccHHHHHHHHhhcccccHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 79999986432 234444455555554432 2356678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH--hCCcEEEEEccCcCcccc-CCEEEEEeC--CeEEEecChHHHHhc
Q 039402 772 AVDAHTGSHLFQEVLLGL--LSSKTVIYVTHQVEFLPA-ADLILVMKD--GKITQAGKYNDLINS 831 (1496)
Q Consensus 772 aLD~~~~~~i~~~~~~~~--~~~~tvilvtH~~~~l~~-~d~i~~l~~--G~i~~~G~~~~l~~~ 831 (1496)
+||+.+...+.+. ++.+ ..|+|+|+||||++++.. ||+|++|++ |+++..|++++++..
T Consensus 497 gLD~~~~~~i~~l-l~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 497 YLDSEQRIICSKV-IRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TCCHHHHHHHHHH-HHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCHHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999998888754 4443 248999999999999875 999999996 999999999998764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-29 Score=327.40 Aligned_cols=204 Identities=22% Similarity=0.280 Sum_probs=140.2
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHH---------------------HHHhcccCCC-------ccEEEECCeeC
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLI---------------------QTLFRIVEPA-------AGQILIDGIDI 1311 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl---------------------~~L~rl~ep~-------~G~I~IDG~dI 1311 (1496)
..+|+||||+|++||++||+||||||||||+ +.+.++..|+ .|.|.++|.++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3589999999999999999999999999998 8888898888 56677777665
Q ss_pred CCCChHHHhcccEEEccccccc--------------------ccchhhccCCCCCC--c--HHHH-----------HHHH
Q 039402 1312 SLIGLHDLRSRLSIIPQDPVMF--------------------EGTVRSNLDPLEES--T--DEQI-----------WEAL 1356 (1496)
Q Consensus 1312 ~~i~l~~LR~~i~iIpQdp~LF--------------------~gTIR~NLdp~~~~--s--d~eI-----------~~aL 1356 (1496)
... .|+.+++|+|.+.++ .-|+++|+..+... . +.+. .+.|
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred hcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 432 345666666665432 34899998753211 1 1111 1123
Q ss_pred HHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC--EEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcE
Q 039402 1357 DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK--ILMLDEATASVDTATDNLIQQTLRQHF-SDCT 1433 (1496)
Q Consensus 1357 ~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~--ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~T 1433 (1496)
+.+++.+. -+| .....||||||||++|||||+.+|+ |||||||||+||+.+...|.+.|++.. .++|
T Consensus 187 ~~~gL~~~------~~~----~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~t 256 (670)
T 3ux8_A 187 QNVGLDYL------TLS----RSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNT 256 (670)
T ss_dssp HHTTCTTC------CTT----CBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCE
T ss_pred HHcCCchh------hhc----CCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCE
Confidence 33333211 122 2345799999999999999999988 999999999999999999999998753 4799
Q ss_pred EEEEccCcchhcccCEEEEE------eCCeEeEecChhhHhhcCCcHHHH
Q 039402 1434 VLTIAHRITSVIDSDLVLLL------NHGLIEEFDNPANLLENKSSSFSQ 1477 (1496)
Q Consensus 1434 VI~IAHRl~ti~~~DrIlVL------~~G~IvE~g~p~~Ll~~~~s~F~~ 1477 (1496)
||+|+|+++.+..||+|++| ++|++++.|+|+++.+++......
T Consensus 257 vi~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~ 306 (670)
T 3ux8_A 257 LIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQ 306 (670)
T ss_dssp EEEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHH
T ss_pred EEEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCchhHHHH
Confidence 99999999988889999999 899999999999999876554443
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-32 Score=312.14 Aligned_cols=223 Identities=11% Similarity=0.065 Sum_probs=176.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCccEEEEeeEEEecCCCC
Q 039402 553 LESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSH 632 (1496)
Q Consensus 553 L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 632 (1496)
.+-+.+.+++.+.+. ..|+..+...+..+.++.++.+||.+++..+...... ..+.......++++|++|+|+
T Consensus 40 ~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~~~vs~~y~---- 112 (305)
T 2v9p_A 40 GSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATG--EGSWKSILTFFNYQNIELITF---- 112 (305)
T ss_dssp TTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCS--SCCTHHHHHHHHHTTCCHHHH----
T ss_pred CccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC--CCcccccCCeEEEEEEEEEcC----
Confidence 344566677766555 4799999999999999999999999999753211110 000000112478889999985
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHH-HhccCCCCCHHH
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIED-NILFGKEMNRER 711 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~e-NI~~g~~~~~~~ 711 (1496)
.++|+|+||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|+|+++.+|++| ||.++...++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I-----~~~v~q~~~lf~~ti~~~ni~~~~~~~~-- 182 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV-----LSFANHKSHFWLASLADTRAALVDDATH-- 182 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-----ECGGGTTSGGGGGGGTTCSCEEEEEECH--
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-----EEEecCccccccccHHHHhhccCccccH--
Confidence 46999999999999999999999999999999999998 8988 46789999999999998 9999754432
Q ss_pred HHHHHHHhchhhHHHh-ccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 039402 712 YNAVLDACSLKKDLEI-LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL 790 (1496)
Q Consensus 712 ~~~v~~~~~l~~d~~~-l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~ 790 (1496)
++.+.++. +|.|.+ |.+|||||||| |||++++|+||| ||+||++++..+..
T Consensus 183 --------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~------- 234 (305)
T 2v9p_A 183 --------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY------- 234 (305)
T ss_dssp --------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-------
T ss_pred --------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-------
Confidence 12334554 666654 78999999999 999999999999 99999999776631
Q ss_pred CCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHH
Q 039402 791 SSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 791 ~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l 828 (1496)
+||+++.+..||+| +|++|++++.|+++++
T Consensus 235 -------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 235 -------LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp -------GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred -------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 29999999899999 9999999999999998
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-28 Score=293.58 Aligned_cols=200 Identities=17% Similarity=0.187 Sum_probs=153.1
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC--------------------------------------CCccE
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE--------------------------------------PAAGQ 1303 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e--------------------------------------p~~G~ 1303 (1496)
+++++||++++| +++|+|+||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 789999999999 999999999999999999966653 45789
Q ss_pred EEECCeeCCCCChHHHhcc-cEEEcccccccccchhhc---cCCCCCCcH------------------------------
Q 039402 1304 ILIDGIDISLIGLHDLRSR-LSIIPQDPVMFEGTVRSN---LDPLEESTD------------------------------ 1349 (1496)
Q Consensus 1304 I~IDG~dI~~i~l~~LR~~-i~iIpQdp~LF~gTIR~N---Ldp~~~~sd------------------------------ 1349 (1496)
+.+||.+++...+.+++.. ++++||++.++-++..++ +|......+
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999987778888777 799999998876655433 333221100
Q ss_pred ----------------------------------HHHHHHHHHcCCcHHHHh---------ccCCccc---ccccCCCC-
Q 039402 1350 ----------------------------------EQIWEALDKCQLGDEVRK---------KEGKLDS---KVTENGEN- 1382 (1496)
Q Consensus 1350 ----------------------------------~eI~~aL~~~~L~~~i~~---------lp~gLdt---~v~e~G~n- 1382 (1496)
+++.+.++..++.+.-.. .+.|++. .+..++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 112222222222110000 0112222 34444444
Q ss_pred -------CCchHHHHHHHHHHHccCC--CEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEE
Q 039402 1383 -------WSMGQRQLVCLGRVLLKRS--KILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLL 1453 (1496)
Q Consensus 1383 -------LS~GQrQll~LARALLr~~--~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL 1453 (1496)
||||||||++|||+|+.+| +||||||||++||+.+.+.|.+.|++..+++|||+|||+++.+..||+|+||
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 8999999999999999999 9999999999999999999999999987889999999999888889999999
Q ss_pred ----eCCeEeEec
Q 039402 1454 ----NHGLIEEFD 1462 (1496)
Q Consensus 1454 ----~~G~IvE~g 1462 (1496)
++|+++...
T Consensus 369 ~k~~~~G~~~~~~ 381 (415)
T 4aby_A 369 EKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEeccCCceEEEE
Confidence 999998653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-30 Score=312.90 Aligned_cols=192 Identities=10% Similarity=0.034 Sum_probs=155.5
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCcc-E-EEECCeeCCCCChHHHhc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG-Q-ILIDGIDISLIGLHDLRS 1321 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G-~-I~IDG~dI~~i~l~~LR~ 1321 (1496)
+.++++||+++|. ++||++++||+++|+||||||||||+++|.|++.|++| + |++|| +.|+
T Consensus 117 ~mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg---------~~~~ 179 (460)
T 2npi_A 117 TMKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL---------DPQQ 179 (460)
T ss_dssp THHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC---------CTTS
T ss_pred chhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC---------CccC
Confidence 4578888888884 79999999999999999999999999999999999999 9 99998 2478
Q ss_pred ccEEEcccccccc----cchhhccCCCCC----CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH
Q 039402 1322 RLSIIPQDPVMFE----GTVRSNLDPLEE----STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1393 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~----gTIR~NLdp~~~----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~L 1393 (1496)
.++++||++.+|. .|+++|+-+... ..++.+.++++.++ ++.... ..+||||||||++|
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~g-----------l~~~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFG-----------LERINE--NKDLYLECISQLGQ 246 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCC-----------SSSGGG--CHHHHHHHHHHHHH
T ss_pred CeeeeccchhhcccccccchhhhhcccccccCcchHHHHHHHHHHhC-----------CCcccc--hhhhhHHHHHHHHH
Confidence 8999999996553 489999822111 01122223333333 333322 56899999999999
Q ss_pred HHH--HccCCCE----EEEEc-CCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcc------hhc-ccCE-----EEEEe
Q 039402 1394 GRV--LLKRSKI----LMLDE-ATASVDTATDNLIQQTLRQHFSDCTVLTIAHRIT------SVI-DSDL-----VLLLN 1454 (1496)
Q Consensus 1394 ARA--LLr~~~I----LiLDE-aTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~------ti~-~~Dr-----IlVL~ 1454 (1496)
||| |+++|+| ||||| ||+++|+. .+.|.+.+++. +.|+|+|+|+.+ .+. -||+ |++|+
T Consensus 247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 999 9999999 99999 99999999 77788888764 789999999988 444 4999 99999
Q ss_pred -CCeEeEecChhhHhh
Q 039402 1455 -HGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1455 -~G~IvE~g~p~~Ll~ 1469 (1496)
+|+|+ .|+|+++.+
T Consensus 324 k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 324 KLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CCTTCC-CCCHHHHHH
T ss_pred CCCcEE-ECCHHHHhh
Confidence 99999 899998853
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-26 Score=296.41 Aligned_cols=102 Identities=24% Similarity=0.438 Sum_probs=89.5
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEE
Q 039402 735 VIGERGINLSGGQKQRIQIARALYQDS---DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLI 811 (1496)
Q Consensus 735 ~ig~~g~~LSGGQkqRv~LARAl~~~~---~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 811 (1496)
.+|+.+.+|||||||||+|||||.++| ++|||||||+|||++..+.+.+.+.+...+|+|||+|||+++.+..||+|
T Consensus 798 ~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrI 877 (916)
T 3pih_A 798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHI 877 (916)
T ss_dssp BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEE
Confidence 368899999999999999999999876 69999999999999999988764433334699999999999999889999
Q ss_pred EEE------eCCeEEEecChHHHHhcCcchH
Q 039402 812 LVM------KDGKITQAGKYNDLINSGTDFM 836 (1496)
Q Consensus 812 ~~l------~~G~i~~~G~~~~l~~~~~~~~ 836 (1496)
++| ++|+|+++|+++++.+....|.
T Consensus 878 ivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt 908 (916)
T 3pih_A 878 IDLGPEGGKEGGYIVATGTPEEIAKNPHSYT 908 (916)
T ss_dssp EEEESSSGGGCCEEEEEESHHHHHSCTTCHH
T ss_pred EEecCCCCCCCCEEEEEcCHHHHHhCCchHH
Confidence 999 8999999999999987665443
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-25 Score=288.74 Aligned_cols=97 Identities=25% Similarity=0.497 Sum_probs=86.2
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccC---CCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEE
Q 039402 736 IGERGINLSGGQKQRIQIARALYQD---SDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLIL 812 (1496)
Q Consensus 736 ig~~g~~LSGGQkqRv~LARAl~~~---~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 812 (1496)
.++...+|||||||||+|||+|.++ |++|||||||++||+.....+.+.+.....+|+|||+|||+++++..||+|+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 5788899999999999999999996 7999999999999999999887644333356999999999999997799999
Q ss_pred EE------eCCeEEEecChHHHHhcC
Q 039402 813 VM------KDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 813 ~l------~~G~i~~~G~~~~l~~~~ 832 (1496)
+| ++|+|+..|+++++.+..
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 99 699999999999987654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-25 Score=287.23 Aligned_cols=101 Identities=23% Similarity=0.463 Sum_probs=87.9
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEE
Q 039402 735 VIGERGINLSGGQKQRIQIARALYQDS---DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLI 811 (1496)
Q Consensus 735 ~ig~~g~~LSGGQkqRv~LARAl~~~~---~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 811 (1496)
..++...+|||||||||+|||||.++| ++|||||||++||+.....+.+.+.....+|+|||+|||+++++..||+|
T Consensus 838 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrI 917 (972)
T 2r6f_A 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYI 917 (972)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEE
Confidence 457888999999999999999999875 99999999999999999988765433334699999999999998789999
Q ss_pred EEE------eCCeEEEecChHHHHhcCcch
Q 039402 812 LVM------KDGKITQAGKYNDLINSGTDF 835 (1496)
Q Consensus 812 ~~l------~~G~i~~~G~~~~l~~~~~~~ 835 (1496)
++| ++|+|+..|+++++.+....+
T Consensus 918 ivL~p~gG~~~G~Iv~~g~~~el~~~~~~~ 947 (972)
T 2r6f_A 918 IDLGPEGGDRGGQIVAVGTPEEVAEVKESH 947 (972)
T ss_dssp EEECSSSTTSCCSEEEEESHHHHHTCTTCH
T ss_pred EEEcCCCCCCCCEEEEecCHHHHHhCchhH
Confidence 999 789999999999998654433
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-24 Score=255.55 Aligned_cols=201 Identities=17% Similarity=0.254 Sum_probs=143.8
Q ss_pred eeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc-----------------------------------------------
Q 039402 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV----------------------------------------------- 1297 (1496)
Q Consensus 1265 ~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~----------------------------------------------- 1297 (1496)
++++++.+| .++|+|+||||||||+.+|..+.
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578899999 99999999999999999998432
Q ss_pred ---CCCccEEEECCeeCCCCChHHHhcccEEEccccccc-ccchhhccCCCCC----CcH------------HHHHHHHH
Q 039402 1298 ---EPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMF-EGTVRSNLDPLEE----STD------------EQIWEALD 1357 (1496)
Q Consensus 1298 ---ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF-~gTIR~NLdp~~~----~sd------------~eI~~aL~ 1357 (1496)
.+.+|++.+||.+++.-.+.+++..+++.||+..++ .|++.+|+...++ +-| +++.+.++
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~ 175 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN 175 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 344679999999986656777777899999998765 8899988753111 000 11222221
Q ss_pred Hc------------CCcH-HHHhccCCcccccc------cCCCCCCchHHHHHHHHHHHc----cCCCEEEEEcCCCCCC
Q 039402 1358 KC------------QLGD-EVRKKEGKLDSKVT------ENGENWSMGQRQLVCLGRVLL----KRSKILMLDEATASVD 1414 (1496)
Q Consensus 1358 ~~------------~L~~-~i~~lp~gLdt~v~------e~G~nLS~GQrQll~LARALL----r~~~ILiLDEaTsslD 1414 (1496)
.. .+.+ ....++.|++..++ ....+||+|||||++|||||. ++|+||||||||++||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD 255 (322)
T 1e69_A 176 RFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLD 255 (322)
T ss_dssp HHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCC
T ss_pred HHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC
Confidence 11 0100 01123345555432 234689999999999999996 7899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEE--EEEeCCeEe-EecChhh
Q 039402 1415 TATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLV--LLLNHGLIE-EFDNPAN 1466 (1496)
Q Consensus 1415 ~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrI--lVL~~G~Iv-E~g~p~~ 1466 (1496)
+.+.+.+.+.|++..+++|||+|+|+.+.+..||++ ++|++|+.. ...+.++
T Consensus 256 ~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 256 DYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 999999999999886788999999998877789987 889888543 3344444
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-27 Score=286.76 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=136.8
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc-E-EEEcC----eeEEEccCCccC----CCcHHHHhccCCC
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG-T-LKLCG----TKAYVAQSPWIQ----SGKIEDNILFGKE 706 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G-~-i~~~g----~~~yv~Q~~~i~----~~ti~eNI~~g~~ 706 (1496)
.++||++++|++++|+||||||||||+++|+|.++|++| + |.++| .++|+||++.++ ..|++||+ |+..
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~ 207 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT-WGQS 207 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSCB
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh-cccc
Confidence 478899999999999999999999999999999999999 9 99987 478999998432 35899999 7654
Q ss_pred CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH--HccCCCE----EEEec-CCCCCCHHHHH
Q 039402 707 MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA--LYQDSDI----YLFDD-PFSAVDAHTGS 779 (1496)
Q Consensus 707 ~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA--l~~~~~i----llLDe-p~saLD~~~~~ 779 (1496)
..... . ......+-++.+ |...... ..+||||||||++|||| |..+|++ +|||| ||++||+. .
T Consensus 208 ~~~~~-~---~~~~~~~ll~~~--gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~- 277 (460)
T 2npi_A 208 LTSGA-T---LLHNKQPMVKNF--GLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-L- 277 (460)
T ss_dssp CBSSC-C---SSCCBCCEECCC--CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-C-
T ss_pred cccCc-c---hHHHHHHHHHHh--CCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-H-
Confidence 21000 0 000011111111 2222222 67999999999999999 9999999 99999 99999998 3
Q ss_pred HHHHHHHHHHhCCcEEEEEccCcC------ccc-cCCE-----EEEEe-CCeEEEecChHHHH
Q 039402 780 HLFQEVLLGLLSSKTVIYVTHQVE------FLP-AADL-----ILVMK-DGKITQAGKYNDLI 829 (1496)
Q Consensus 780 ~i~~~~~~~~~~~~tvilvtH~~~------~l~-~~d~-----i~~l~-~G~i~~~G~~~~l~ 829 (1496)
..+.++++. .++|+|+|||+.+ ++. .||+ |++|+ +|+++ .|+.+++.
T Consensus 278 ~~l~~l~~~--~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 278 AELHHIIEK--LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHHHHHH--TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred HHHHHHHHH--hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 333444443 3789999999988 544 4999 99999 99999 99988774
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-24 Score=263.15 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=72.0
Q ss_pred CChHHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEE----eC
Q 039402 743 LSGGQKQRIQIARALYQDS--DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVM----KD 816 (1496)
Q Consensus 743 LSGGQkqRv~LARAl~~~~--~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l----~~ 816 (1496)
||||||||++|||+|+++| ++|||||||++||+.+...+.+ .+..+.+|+|||+|||+++++..||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~-~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhCCCEEEEEeCcHHHHhhcCeEEEEEEeccC
Confidence 8999999999999999999 9999999999999999999875 455555789999999999988889999999 99
Q ss_pred CeEEEe
Q 039402 817 GKITQA 822 (1496)
Q Consensus 817 G~i~~~ 822 (1496)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 998754
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-26 Score=250.29 Aligned_cols=159 Identities=18% Similarity=0.138 Sum_probs=102.9
Q ss_pred ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhc
Q 039402 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSN 1340 (1496)
Q Consensus 1261 ~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~N 1340 (1496)
.+|+|| ++||++||+|+||||||||+++|.|+ +|++|+|. +.++. .+....|++++++||+| ++|
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~-~~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILT-RPAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEE-ECSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEec-CCchhhhcceEEecCCH-------HHH
Confidence 589996 89999999999999999999999999 99999994 33443 12335688999999998 677
Q ss_pred cCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHH
Q 039402 1341 LDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNL 1420 (1496)
Q Consensus 1341 Ldp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~ 1420 (1496)
+.++.. ..++.+....-.+.+.+ .+.. | + |||||++|||||+.+|+||||||||++ +...
T Consensus 79 l~~~~~----~~~~~~~~~~~~~~~~~-------~l~~-g--l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~ 138 (208)
T 3b85_A 79 IDPYLR----PLHDALRDMVEPEVIPK-------LMEA-G--I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQ 138 (208)
T ss_dssp -CTTTH----HHHHHHTTTSCTTHHHH-------HHHT-T--S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHH
T ss_pred HHHHHH----HHHHHHHHhccHHHHHH-------HHHh-C--C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHH
Confidence 743311 01111111000011111 1111 1 1 999999999999999999999999999 8888
Q ss_pred HHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeE
Q 039402 1421 IQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLI 1458 (1496)
Q Consensus 1421 Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~I 1458 (1496)
+.+.|++.-+++||| |+|+++.+.. +...++|..
T Consensus 139 l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G~~ 172 (208)
T 3b85_A 139 MKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSGLR 172 (208)
T ss_dssp HHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred HHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCcHH
Confidence 999998874578999 9999886543 445566643
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-25 Score=248.56 Aligned_cols=166 Identities=14% Similarity=0.111 Sum_probs=125.4
Q ss_pred ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCCh-HHHhcccEEEcccccccc-----
Q 039402 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL-HDLRSRLSIIPQDPVMFE----- 1334 (1496)
Q Consensus 1261 ~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-~~LR~~i~iIpQdp~LF~----- 1334 (1496)
.-|+||||+|++|+.+||+||||||||||+++|.|++ | |+|.+ |+++.+... ...|..++|+||+|.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 6 99999 888765533 346788999999987664
Q ss_pred ------cchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH-----HHHHccCCCE
Q 039402 1335 ------GTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL-----GRVLLKRSKI 1403 (1496)
Q Consensus 1335 ------gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~L-----ARALLr~~~I 1403 (1496)
++++.|.- ..+++++.++++..... .+. .++|||||||++| ||+++++|++
T Consensus 87 ~~~l~~~~~~~~~~---g~~~~~i~~~l~~~~~~------------il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 87 EDFLEYDNYANNFY---GTLKSEYDKAKEQNKIC------------LFE---MNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp TCEEEEEEETTEEE---EEEHHHHHHHHHTTCEE------------EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred cchhhhhhcccccC---CCcHHHHHHHHhCCCcE------------EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 34444421 12356677777654321 111 5789999999999 8999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeC
Q 039402 1404 LMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNH 1455 (1496)
Q Consensus 1404 LiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~ 1455 (1496)
++|||||+++|.++++.|++.+++..++.| ++| +..||+|+|+++
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999999999999999988777777 788 678999999865
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-22 Score=238.31 Aligned_cols=82 Identities=21% Similarity=0.271 Sum_probs=75.3
Q ss_pred CCCCCCchHHHHHHHHHHHc------cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEE
Q 039402 1379 NGENWSMGQRQLVCLGRVLL------KRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVL 1451 (1496)
Q Consensus 1379 ~G~nLS~GQrQll~LARALL------r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIl 1451 (1496)
...+||||||||++|||||. ++|++|+|||||++||+.+...+.+.|++.. .++|||+|+|+++.+..||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 44579999999999999999 7999999999999999999999999998864 4799999999999988899999
Q ss_pred EEeCCeEeE
Q 039402 1452 LLNHGLIEE 1460 (1496)
Q Consensus 1452 VL~~G~IvE 1460 (1496)
+|++|+|++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999976
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-24 Score=254.69 Aligned_cols=149 Identities=17% Similarity=0.120 Sum_probs=121.7
Q ss_pred EEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEc
Q 039402 1248 LLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIP 1327 (1496)
Q Consensus 1248 f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIp 1327 (1496)
|+|++| | +++++++|+++++|+.++|+|+||||||||+++|.|+++|++|.|.|+|.+. +.+..+|+.+++++
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLFF 223 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEEC
T ss_pred cCchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEEe
Confidence 777777 7 3589999999999999999999999999999999999999999999999763 33333455566553
Q ss_pred ccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEE
Q 039402 1328 QDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLD 1407 (1496)
Q Consensus 1328 Qdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLD 1407 (1496)
| +||+||++|||||+++|++|+||
T Consensus 224 g--------------------------------------------------------gg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 224 G--------------------------------------------------------GNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp B--------------------------------------------------------TTBCHHHHHHHHTTSCCSEEEEC
T ss_pred C--------------------------------------------------------CChhHHHHHHHHhhhCCCEEEEc
Confidence 0 79999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEccCcchhcccCEEEEEeCCeEeEecChhh
Q 039402 1408 EATASVDTATDNLIQQTLRQHFSDC-TVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1408 EaTsslD~~Td~~Iq~~I~~~f~~~-TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~ 1466 (1496)
|||+ .+ +++.|+....++ |+|+++|+.++...||||++|++|+....+-|.+
T Consensus 248 E~~~---~e----~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~~~~~~~~~ 300 (330)
T 2pt7_A 248 ELRS---SE----AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFE 300 (330)
T ss_dssp CCCS---TH----HHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSGGGTTSCHH
T ss_pred CCCh---HH----HHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCcccCCCCHH
Confidence 9998 22 445565555554 8999999999888899999999986433343433
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-22 Score=242.32 Aligned_cols=85 Identities=25% Similarity=0.368 Sum_probs=74.1
Q ss_pred cCCCCCCChHHHHHHHHHHHHc------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCE
Q 039402 737 GERGINLSGGQKQRIQIARALY------QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADL 810 (1496)
Q Consensus 737 g~~g~~LSGGQkqRv~LARAl~------~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~ 810 (1496)
++...+||||||||++|||||. .+|++|||||||++||+.+...+++.+......|+|||+|||+++....||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 4567799999999999999999 7999999999999999999998876433333458999999999998777999
Q ss_pred EEEEeCCeEEE
Q 039402 811 ILVMKDGKITQ 821 (1496)
Q Consensus 811 i~~l~~G~i~~ 821 (1496)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999864
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.86 E-value=8.5e-22 Score=232.52 Aligned_cols=182 Identities=23% Similarity=0.261 Sum_probs=122.5
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCC----------------------------------------------
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV---------------------------------------------- 670 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~---------------------------------------------- 670 (1496)
+++++++.+| +++|+||||||||||+.+|...+
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3678999999 99999999999999999998432
Q ss_pred ----CCCccEEEEcCee-------------EEEccCCcc-CCCcHHHHhccCCCC-----C--------HHHHHHHHHHh
Q 039402 671 ----PKISGTLKLCGTK-------------AYVAQSPWI-QSGKIEDNILFGKEM-----N--------RERYNAVLDAC 719 (1496)
Q Consensus 671 ----~~~~G~i~~~g~~-------------~yv~Q~~~i-~~~ti~eNI~~g~~~-----~--------~~~~~~v~~~~ 719 (1496)
.+.+|.+.++|.. ++.+|+..+ +.+++.+|+...... + ...|+++.+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2234677788743 344555443 356788877653210 0 11233333321
Q ss_pred c---------------hhh-HHHhccCCCccc------ccCCCCCCChHHHHHHHHHHHHc----cCCCEEEEecCCCCC
Q 039402 720 S---------------LKK-DLEILSFGDQTV------IGERGINLSGGQKQRIQIARALY----QDSDIYLFDDPFSAV 773 (1496)
Q Consensus 720 ~---------------l~~-d~~~l~~g~~t~------ig~~g~~LSGGQkqRv~LARAl~----~~~~illLDep~saL 773 (1496)
. +.. ..+.++.|.++. ....+.+||||||||++||||+. .+|+++||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 1 000 011233333332 22346799999999999999996 689999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEE--EEEeCCeEE
Q 039402 774 DAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLI--LVMKDGKIT 820 (1496)
Q Consensus 774 D~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i--~~l~~G~i~ 820 (1496)
|+.....+++ .+....+++|+|++||+.+.+..||++ ++|++|...
T Consensus 255 D~~~~~~l~~-~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~ 302 (322)
T 1e69_A 255 DDYNAERFKR-LLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSA 302 (322)
T ss_dssp CHHHHHHHHH-HHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEE
T ss_pred CHHHHHHHHH-HHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEE
Confidence 9999888875 455555688999999998877789987 888888654
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-23 Score=220.69 Aligned_cols=149 Identities=15% Similarity=0.172 Sum_probs=99.8
Q ss_pred eeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC--eeEEEccCCccCCCcHHHHhccCCCCCHHHHHHH
Q 039402 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAV 715 (1496)
Q Consensus 638 ~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g--~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v 715 (1496)
|+||++++||+++|+||||||||||++++.+.... +++ ..++++|++.-.. .+...++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~------~~~d~~~g~~~~~~~~~~------------~~~~~~~~~ 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEV------ISSDFCRGLMSDDENDQT------------VTGAAFDVL 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGE------EEHHHHHHHHCSSTTCGG------------GHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeE------EccHHHHHHhcCcccchh------------hHHHHHHHH
Confidence 68999999999999999999999999987643221 221 1255666542110 011111111
Q ss_pred HHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH----------------H
Q 039402 716 LDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTG----------------S 779 (1496)
Q Consensus 716 ~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~----------------~ 779 (1496)
... ....+..|..+.+.. ....|||||||++||||+..+|++++|||||++||+.++ .
T Consensus 63 ~~~-----~~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~ 136 (171)
T 4gp7_A 63 HYI-----VSKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQ 136 (171)
T ss_dssp HHH-----HHHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHH
T ss_pred HHH-----HHHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHH
Confidence 111 111223344444433 345699999999999999999999999999999999943 5
Q ss_pred HHHHHHHHHH-hCCcEEEEEccCcCccccCCEE
Q 039402 780 HLFQEVLLGL-LSSKTVIYVTHQVEFLPAADLI 811 (1496)
Q Consensus 780 ~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i 811 (1496)
.+.+ .+..+ .+|.|+|+|||+++.+..++++
T Consensus 137 ~l~~-~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 137 QMKK-SIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHH-HSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred Hhhh-hhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 5543 33332 3489999999999888766554
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.85 E-value=8.7e-23 Score=219.72 Aligned_cols=149 Identities=15% Similarity=0.153 Sum_probs=111.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHH
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWE 1354 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~ 1354 (1496)
++||+|+||||||||+++|.|++. |.++|.+.........++++++++|++ |.++|+-. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~~--~-------- 61 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIFS--S-------- 61 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEEE--E--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHHH--h--------
Confidence 799999999999999999999985 667887764443225678999999997 34445410 0
Q ss_pred HHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH-----HccCCCEEEEEc--CCCCCCHHHHHHHHHHHHH
Q 039402 1355 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV-----LLKRSKILMLDE--ATASVDTATDNLIQQTLRQ 1427 (1496)
Q Consensus 1355 aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA-----LLr~~~ILiLDE--aTsslD~~Td~~Iq~~I~~ 1427 (1496)
.+. + -+..++..+.+||+|||||++|||| ++.+|++|+||| ||+++|+.+.+.+.+.+++
T Consensus 62 ----~~~-------~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 62 ----KFF-------T--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp ----TTC-------C--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred ----hcC-------C--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 000 0 0123555667899999999999996 999999999999 9999999999999999987
Q ss_pred hcCCcEEEEEcc---Ccchhcc-cCEEEEEeCCeEeEec
Q 039402 1428 HFSDCTVLTIAH---RITSVID-SDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1428 ~f~~~TVI~IAH---Rl~ti~~-~DrIlVL~~G~IvE~g 1462 (1496)
.++|+|+++| +.+.+.. ||| .+|+|.|..
T Consensus 129 --~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~~~ 161 (178)
T 1ye8_A 129 --PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIELT 161 (178)
T ss_dssp --TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEECC
T ss_pred --CCCeEEEEEccCCCchHHHHHHhc----CCcEEEEec
Confidence 4677888886 5556654 776 668887754
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.8e-24 Score=232.93 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=90.2
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE----------cCeeEEEccCCccCCCcHHHHh-
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL----------CGTKAYVAQSPWIQSGKIEDNI- 701 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~----------~g~~~yv~Q~~~i~~~ti~eNI- 701 (1496)
+.+|+|+ ++||+++|+||||||||||+++|+|. +|++|+|.. ...++|++|++ +||+
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------~enl~ 80 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------NEKID 80 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------------C
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-------HHHHH
Confidence 4688885 89999999999999999999999999 999999843 12468888877 6777
Q ss_pred ccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 039402 702 LFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL 781 (1496)
Q Consensus 702 ~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i 781 (1496)
.++.+ .+........ .+.++. .+.. .| |||||++|||||+.+|+++||||||++ +...+
T Consensus 81 ~~~~~----~~~~~~~~~~-~~~~~~-------~l~~---gl--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l 139 (208)
T 3b85_A 81 PYLRP----LHDALRDMVE-PEVIPK-------LMEA---GI--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQM 139 (208)
T ss_dssp TTTHH----HHHHHTTTSC-TTHHHH-------HHHT---TS--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHH
T ss_pred HHHHH----HHHHHHHhcc-HHHHHH-------HHHh---CC--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHH
Confidence 44321 0110000000 000100 0111 12 999999999999999999999999999 55555
Q ss_pred HHHHHHHHhCCcEEEEEccCcCcccc
Q 039402 782 FQEVLLGLLSSKTVIYVTHQVEFLPA 807 (1496)
Q Consensus 782 ~~~~~~~~~~~~tvilvtH~~~~l~~ 807 (1496)
. +++..+.+|+|+| |||+++.+..
T Consensus 140 ~-~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 140 K-MFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp H-HHHTTBCTTCEEE-EEEC------
T ss_pred H-HHHHHhcCCCEEE-EECCHHHHhC
Confidence 4 4454444588999 9999876543
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-22 Score=214.46 Aligned_cols=149 Identities=13% Similarity=0.149 Sum_probs=106.7
Q ss_pred eeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEccccc--ccccchhhccC
Q 039402 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPV--MFEGTVRSNLD 1342 (1496)
Q Consensus 1265 ~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~--LF~gTIR~NLd 1342 (1496)
||||++++||.++|+|+||||||||++++++ |... ++.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 2211 2234445 67788762 33333332221
Q ss_pred CCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHH----
Q 039402 1343 PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD---- 1418 (1496)
Q Consensus 1343 p~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td---- 1418 (1496)
...+ ..+..|+...+.. -...|+|||||++||||+..+|++|+|||||+++|+.++
T Consensus 64 --------~~~~-----------~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~ 123 (171)
T 4gp7_A 64 --------YIVS-----------KRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD 123 (171)
T ss_dssp --------HHHH-----------HHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS
T ss_pred --------HHHH-----------HHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC
Confidence 0111 1122344443333 334599999999999999999999999999999999954
Q ss_pred ------------HHHHHHHHHhc-CCcEEEEEccCcchhcccCEE
Q 039402 1419 ------------NLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLV 1450 (1496)
Q Consensus 1419 ------------~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrI 1450 (1496)
+.+.+.|++.. ++.|+|+|+|+++.+..++++
T Consensus 124 ~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 124 RQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 77777765432 388999999999999888775
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-22 Score=244.81 Aligned_cols=173 Identities=17% Similarity=0.111 Sum_probs=136.6
Q ss_pred ccceeeeEEeeCCc--------------------EEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHh
Q 039402 1261 LVLQGISCTFPGGE--------------------KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1320 (1496)
Q Consensus 1261 ~vLk~iS~~I~~Ge--------------------kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR 1320 (1496)
.+|++|||++++|| .+||+||||||||||+++|.|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999998764 2
Q ss_pred cccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch--HHHHHHHHHHHc
Q 039402 1321 SRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG--QRQLVCLGRVLL 1398 (1496)
Q Consensus 1321 ~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~G--QrQll~LARALL 1398 (1496)
.++++|++....-|+++|+.... .++.+.+.+++.++.+. +..+ .+|+| ||||+.|||||.
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~--~~~~~~~~L~~~~L~~~--------~~~~-----~lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGS--TNFPPDTYLEKMKFYEY--------DFFI-----IISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGG--SSCCHHHHHHHTTGGGC--------SEEE-----EEESSCCCHHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccc--hHHHHHHHHHHcCCCcc--------CCeE-----EeCCCCccHHHHHHHHHHH
Confidence 27899998655679999986421 23456778888876432 2222 17888 999999999999
Q ss_pred c----------CCCEEEEEcCCCCCCHHHHHHHHHHHHHhc---------C-CcEEEEEccCcch--hcc-cCEEE-EEe
Q 039402 1399 K----------RSKILMLDEATASVDTATDNLIQQTLRQHF---------S-DCTVLTIAHRITS--VID-SDLVL-LLN 1454 (1496)
Q Consensus 1399 r----------~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f---------~-~~TVI~IAHRl~t--i~~-~DrIl-VL~ 1454 (1496)
+ +|++++|||||+++|+.+.+.+.+.|++.. . ..++++-||.++. +.. ||+|. .|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 9 999999999999999999999888887752 1 2567788998876 555 77774 444
Q ss_pred CCe
Q 039402 1455 HGL 1457 (1496)
Q Consensus 1455 ~G~ 1457 (1496)
+|+
T Consensus 253 eg~ 255 (413)
T 1tq4_A 253 IYK 255 (413)
T ss_dssp GGG
T ss_pred cch
Confidence 443
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.9e-23 Score=249.85 Aligned_cols=195 Identities=13% Similarity=0.107 Sum_probs=156.5
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCe---eCCCC-----C
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI---DISLI-----G 1315 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~---dI~~i-----~ 1315 (1496)
+.++++|+++.|..+ ..+|+++ |+|.+||++||+|+||||||||+++|.|+.+|++|.|.++|. ++..+ +
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 468999999999643 4599999 999999999999999999999999999999999999999998 55443 2
Q ss_pred hHHHhcccEEEccc--ccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH
Q 039402 1316 LHDLRSRLSIIPQD--PVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1393 (1496)
Q Consensus 1316 l~~LR~~i~iIpQd--p~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~L 1393 (1496)
...+++.+++++|+ |....-|+.+|+... .|.+. ..+ .+ +. .+-+...+||+|| ||++|
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~-----ae~~~---~~~-~~-v~--------~~ld~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRI-----AEDFR---DRG-QH-VL--------LIMDSLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHH-----HHHHH---TTT-CE-EE--------EEEECHHHHHHHH-HHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHH-----HHHHH---hCC-CC-HH--------HHHHhHHHHHHHH-HHHHH
Confidence 35688899999995 334455888887421 12211 100 00 00 1113356799999 99999
Q ss_pred HHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC-----Cc-----EEEEEccCcchhcccCEEEEEeCCeEeEecC
Q 039402 1394 GRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS-----DC-----TVLTIAHRITSVIDSDLVLLLNHGLIEEFDN 1463 (1496)
Q Consensus 1394 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~-----~~-----TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~ 1463 (1496)
| +++|++ |+++|+.+...+++.+++..+ ++ ||++++|+++ ...||++++|++|+|++.++
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRR 338 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHH
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCC
Confidence 9 899998 999999999999999988755 54 9999999999 66799999999999999999
Q ss_pred hhhHhh
Q 039402 1464 PANLLE 1469 (1496)
Q Consensus 1464 p~~Ll~ 1469 (1496)
|.++..
T Consensus 339 ~~~~~~ 344 (438)
T 2dpy_A 339 LAEAGH 344 (438)
T ss_dssp HHHTTC
T ss_pred HHHccC
Confidence 988864
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-21 Score=206.24 Aligned_cols=139 Identities=14% Similarity=0.230 Sum_probs=98.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCC-CccEEE--E-----cCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHh
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPK-ISGTLK--L-----CGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC 719 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~-~~G~i~--~-----~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~ 719 (1496)
+++|+||||||||||+++|+|++.. ..|... . ...++|++|++ +..+|++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~-------------- 61 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SS-------------- 61 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EE--------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hh--------------
Confidence 6899999999999999999999852 233211 1 12468888876 3334442 10
Q ss_pred chhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH-----HccCCCEEEEec--CCCCCCHHHHHHHHHHHHHHHhCC
Q 039402 720 SLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA-----LYQDSDIYLFDD--PFSAVDAHTGSHLFQEVLLGLLSS 792 (1496)
Q Consensus 720 ~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA-----l~~~~~illLDe--p~saLD~~~~~~i~~~~~~~~~~~ 792 (1496)
+ ....+..+++++.+||||||||++|||| ++.+|++++||| ||+++|+...+.+.+ .+.. .+
T Consensus 62 -~-------~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~-~l~~--~~ 130 (178)
T 1ye8_A 62 -K-------FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ-IMHD--PN 130 (178)
T ss_dssp -T-------TCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH-HHTC--TT
T ss_pred -h-------cCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH-HHhc--CC
Confidence 0 0001135678889999999999999996 999999999999 999999998777654 3332 46
Q ss_pred cEEEEEcc---CcCcccc-CCEEEEEeCCeEEE
Q 039402 793 KTVIYVTH---QVEFLPA-ADLILVMKDGKITQ 821 (1496)
Q Consensus 793 ~tvilvtH---~~~~l~~-~d~i~~l~~G~i~~ 821 (1496)
.|+|++|| +.+++.. +|+ .+|++.+
T Consensus 131 ~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 131 VNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred CeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 77999996 5566654 665 4566654
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-22 Score=240.92 Aligned_cols=157 Identities=22% Similarity=0.204 Sum_probs=124.7
Q ss_pred CCceeeeeEEEeCCc--------------------EEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCee----EEEcc
Q 039402 633 NPTLKDINLKVFHGM--------------------RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----AYVAQ 688 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~--------------------~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~----~yv~Q 688 (1496)
+.+|+||||++++|+ .++|+||||||||||+++|+|.++|++|+|.++|.. +|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 468999999999999 999999999999999999999999999999998843 79999
Q ss_pred CCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChH--HHHHHHHHHHHcc-------
Q 039402 689 SPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGG--QKQRIQIARALYQ------- 759 (1496)
Q Consensus 689 ~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG--QkqRv~LARAl~~------- 759 (1496)
++...+.|++||+.++.+ +.+.++.++..++.+. + . ... |||| ||||++||||+.+
T Consensus 116 ~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~~-------~-~----~~~-lS~G~~~kqrv~la~aL~~~~~p~~l 180 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYEY-------D-F----FII-ISATRFKKNDIDIAKAISMMKKEFYF 180 (413)
T ss_dssp CSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGGC-------S-E----EEE-EESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred ccccCCeeehHhhcccch--HHHHHHHHHHcCCCcc-------C-C----eEE-eCCCCccHHHHHHHHHHHhcCCCeEE
Confidence 986667799999988753 2334556666554321 1 1 122 9999 9999999999999
Q ss_pred ---CCCEEEEecCCCCCCHHHHHHHHHHHHHHH-----hC----CcEEEEEccCcCc
Q 039402 760 ---DSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-----LS----SKTVIYVTHQVEF 804 (1496)
Q Consensus 760 ---~~~illLDep~saLD~~~~~~i~~~~~~~~-----~~----~~tvilvtH~~~~ 804 (1496)
+||+++|||||++||+....++.+.+.... .. .+++++.||.++.
T Consensus 181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~ 237 (413)
T 1tq4_A 181 VRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCH 237 (413)
T ss_dssp EECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTS
T ss_pred EEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCc
Confidence 999999999999999999888765443321 11 3567888998764
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-21 Score=218.73 Aligned_cols=154 Identities=12% Similarity=0.182 Sum_probs=104.9
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEc-------------CeeEEEccCCccCC------
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC-------------GTKAYVAQSPWIQS------ 694 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~-------------g~~~yv~Q~~~i~~------ 694 (1496)
..|+||||++++|++++|+||||||||||+++|+|++ | |+|.++ ..++|++|++..+.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 4699999999999999999999999999999999998 5 988871 13578999875543
Q ss_pred -----CcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH-----HHHHccCCCEE
Q 039402 695 -----GKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI-----ARALYQDSDIY 764 (1496)
Q Consensus 695 -----~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L-----ARAl~~~~~il 764 (1496)
+++.+| .+|.+ .+..+++++.. ....++ .+||||||||+++ ||+++.+|+++
T Consensus 88 ~~l~~~~~~~~-~~g~~--~~~i~~~l~~~------------~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 88 DFLEYDNYANN-FYGTL--KSEYDKAKEQN------------KICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp CEEEEEEETTE-EEEEE--HHHHHHHHHTT------------CEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred chhhhhhcccc-cCCCc--HHHHHHHHhCC------------CcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 233334 23322 33344444432 111222 6899999999999 89999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeC
Q 039402 765 LFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKD 816 (1496)
Q Consensus 765 lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 816 (1496)
+|||||+++|..+...+.+. +....+++| ++| +..+|.|+++++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~-l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKR-MEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHH-HHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHhcCCCCHHHHHHH-HHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 99999999999988877654 344444556 677 467999988764
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.9e-21 Score=217.50 Aligned_cols=151 Identities=15% Similarity=0.158 Sum_probs=97.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEccccccccc-chhhccCCCCCCcHHHHH
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIW 1353 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~ 1353 (1496)
++|||||||||||||+++|+|+..|++|+|.++|.++.. ...++.++++||++.++.. ||.+|+........++.|
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999998743 3456889999999988866 999999754333222223
Q ss_pred HHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcE
Q 039402 1354 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCT 1433 (1496)
Q Consensus 1354 ~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~T 1433 (1496)
+.+.+....++-..++ ..||+|||||+++|||++. +++|||||+++|+.. ..+.+.+++ .++
T Consensus 81 ~~i~~~~~~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~---~~~ 142 (270)
T 3sop_A 81 EPIEKYINEQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSK---VVN 142 (270)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHT---TSE
T ss_pred HHHHHHHHHHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHh---cCc
Confidence 3332222222222222 2589999999999999875 999999999999875 344444444 389
Q ss_pred EEEEccCcchhcc
Q 039402 1434 VLTIAHRITSVID 1446 (1496)
Q Consensus 1434 VI~IAHRl~ti~~ 1446 (1496)
||.|.|+..++..
T Consensus 143 vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 143 IIPVIAKADTMTL 155 (270)
T ss_dssp EEEEETTGGGSCH
T ss_pred EEEEEeccccCCH
Confidence 9999999887643
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.8e-21 Score=221.23 Aligned_cols=174 Identities=16% Similarity=0.149 Sum_probs=125.8
Q ss_pred eeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC----hHHH--hcccEEEccccc-ccc-c
Q 039402 1264 QGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG----LHDL--RSRLSIIPQDPV-MFE-G 1335 (1496)
Q Consensus 1264 k~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~----l~~L--R~~i~iIpQdp~-LF~-g 1335 (1496)
+++||++++|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+...+ +..+ |.+++++||++. ++. .
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4678999999999999999999999999999999999999999999987764 2334 457999999987 664 4
Q ss_pred chhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC--EEEEEcCCCC
Q 039402 1336 TVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK--ILMLDEATAS 1412 (1496)
Q Consensus 1336 TIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~--ILiLDEaTss 1412 (1496)
|+++|+.... ...|. ..++.+++.+. .+..+ ..|| |||++||||+..+|+ +|+|| ||++
T Consensus 171 ~v~e~l~~~~~~~~d~---~lldt~gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYDV---VLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHTTCSE---EEECCCCCSSC-------CHHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHcCCcc---hHHhcCCCCcc-------hhHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 8999985210 00010 11222222211 11112 2377 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEcc---------Ccchhcc-cCEEEEEeCCeEe
Q 039402 1413 VDTATDNLIQQTLRQHFSDCTVLTIAH---------RITSVID-SDLVLLLNHGLIE 1459 (1496)
Q Consensus 1413 lD~~Td~~Iq~~I~~~f~~~TVI~IAH---------Rl~ti~~-~DrIlVL~~G~Iv 1459 (1496)
+|+.+.. +.+++. .+.|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 233 lD~~~~~---~~~~~~-~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 233 LNMLPQA---REFNEV-VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGHHHH---HHHHHH-TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred cCHHHHH---HHHHHh-cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 9998653 223222 3789999999 3333333 6799999999764
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.6e-19 Score=208.48 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=76.4
Q ss_pred CCCchHHHHHHHHHHHc---------cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEE
Q 039402 1382 NWSMGQRQLVCLGRVLL---------KRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLL 1452 (1496)
Q Consensus 1382 nLS~GQrQll~LARALL---------r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlV 1452 (1496)
.+|+||||+++|||+|. .+|+||+||||||+||+...+.+.+.|++.. .|+|+++| ++. .||+|++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998763 89999999 454 8999999
Q ss_pred EeCCeEeEecChhhHh
Q 039402 1453 LNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1453 L~~G~IvE~g~p~~Ll 1468 (1496)
|++|+|++.|+|+++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999999874
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.5e-21 Score=223.51 Aligned_cols=174 Identities=16% Similarity=0.196 Sum_probs=130.8
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEE-----------------------eeCCcEEEEEcCCCCCHHHHHHHHhcccCC
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCT-----------------------FPGGEKTGIVGRTGSGKSTLIQTLFRIVEP 1299 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~-----------------------I~~GekvgIVGrTGSGKSTLl~~L~rl~ep 1299 (1496)
.+.|+++||++.|. ++++++++. +++|+.+||+|+||||||||+++|.|+++|
T Consensus 41 ~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 41 GEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp TCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45799999999995 477887775 899999999999999999999999999999
Q ss_pred CccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC--C----CcHHHHHHHHHHcCCcHHHHhccCCc-
Q 039402 1300 AAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE--E----STDEQIWEALDKCQLGDEVRKKEGKL- 1372 (1496)
Q Consensus 1300 ~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~--~----~sd~eI~~aL~~~~L~~~i~~lp~gL- 1372 (1496)
.+|. .++++||||+.++..|+++|+.... . +..+.+.+.|+..+ .|.
T Consensus 117 ~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~---------~~~~ 170 (312)
T 3aez_A 117 WDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK---------SGSD 170 (312)
T ss_dssp STTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH---------TTCS
T ss_pred cCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC---------CCcc
Confidence 8663 5799999999999999999986432 1 22344555555443 222
Q ss_pred ccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc--cCEE
Q 039402 1373 DSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID--SDLV 1450 (1496)
Q Consensus 1373 dt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~--~DrI 1450 (1496)
+..+ ..||+||+||+++|||++.+|+|||||||++..|... ..+++.+ | .+|.|.|..+.... .+|.
T Consensus 171 ~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~ 239 (312)
T 3aez_A 171 YACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRF 239 (312)
T ss_dssp CEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHH
T ss_pred cCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHH
Confidence 2333 4699999999999999999999999999999998522 1233333 3 34667776665432 5565
Q ss_pred EEEeCCe
Q 039402 1451 LLLNHGL 1457 (1496)
Q Consensus 1451 lVL~~G~ 1457 (1496)
+.+.+|+
T Consensus 240 ~~~rd~~ 246 (312)
T 3aez_A 240 LAMRTTA 246 (312)
T ss_dssp HHHTTTG
T ss_pred HHHHhcc
Confidence 5555554
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-21 Score=203.71 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=89.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCC---ccEEEECCeeCCCCC---hHHHh-cccE----EEcccccccccchhhccC
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPA---AGQILIDGIDISLIG---LHDLR-SRLS----IIPQDPVMFEGTVRSNLD 1342 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~---~G~I~IDG~dI~~i~---l~~LR-~~i~----iIpQdp~LF~gTIR~NLd 1342 (1496)
++++|||+||||||||+++|.|+++|+ .|.|.+||.++.+++ .+.+| ++++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988886 77888 4788 899999988 332
Q ss_pred CCCCCcHHHHHHHHHHcCCcHHHHh-ccCCcccccccCCCCCCchHHHHHHHHHHHccCCCE
Q 039402 1343 PLEESTDEQIWEALDKCQLGDEVRK-KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKI 1403 (1496)
Q Consensus 1343 p~~~~sd~eI~~aL~~~~L~~~i~~-lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~I 1403 (1496)
.++++ .+++.+++.. +| |+|+.++|+ ||+|||||++||||++++|+|
T Consensus 77 -----~~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 77 -----VSEEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp -----CCHHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGG
T ss_pred -----CChhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCcc
Confidence 11222 7899999999 99 999999995 999999999999999999987
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-20 Score=202.84 Aligned_cols=173 Identities=16% Similarity=0.198 Sum_probs=132.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHH
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQI 1352 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI 1352 (1496)
||+++|+|+||||||||++.|.|+++ ++| |.+||.++.++ ..+++++++++|+. .|+ +.|+..+.-..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~---~g~-~~~l~~~~~~~---- 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL---SGT-RGPLSRVGLEP---- 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET---TSC-EEEEEECCCCC----
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec---ccc-eehhhcccccC----
Confidence 79999999999999999999999999 999 99999998654 45799999999996 554 56664321100
Q ss_pred HHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH-HHHH---HHccCCCEEEEEc--CCCCCCHHHHHHHHHHHH
Q 039402 1353 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV-CLGR---VLLKRSKILMLDE--ATASVDTATDNLIQQTLR 1426 (1496)
Q Consensus 1353 ~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll-~LAR---ALLr~~~ILiLDE--aTsslD~~Td~~Iq~~I~ 1426 (1496)
. +...+.++++.+.++|+|||+++ +++| |++++|+|||||| ||...|..+-+.|.+.++
T Consensus 69 ---------~------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 69 ---------P------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp ---------C------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ---------C------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 0 11233478888889999999998 5566 6899999999999 898899999888888887
Q ss_pred HhcCCcEEE----EEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHH
Q 039402 1427 QHFSDCTVL----TIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481 (1496)
Q Consensus 1427 ~~f~~~TVI----~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~ 1481 (1496)
+ ..|+| +|+||.+ ..-+|+|..+++|+|.+... +|++..+.+++++
T Consensus 134 ~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~-----~nr~~~~~~i~~~ 183 (189)
T 2i3b_A 134 T---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTK-----ENRNHLLPDIVTC 183 (189)
T ss_dssp C---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCS-----SSGGGHHHHHHHH
T ss_pred C---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeCh-----HhHHHHHHHHHHH
Confidence 4 23444 4459886 55688999999999998643 2344566666553
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-21 Score=233.50 Aligned_cols=176 Identities=19% Similarity=0.150 Sum_probs=147.4
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-ccEEEECCeeCCCCChHHHhcccEEEcc-----ccccc
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA-AGQILIDGIDISLIGLHDLRSRLSIIPQ-----DPVMF 1333 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~-~G~I~IDG~dI~~i~l~~LR~~i~iIpQ-----dp~LF 1333 (1496)
|++|++++ +++|+.++|+|+|||||||++++|.|+++|+ +|+|.++|.++. + .+|..+++||| +|..|
T Consensus 125 ~~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~ 198 (372)
T 2ewv_A 125 PDKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSF 198 (372)
T ss_dssp CSSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCS
T ss_pred CHHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHH
Confidence 45788876 8999999999999999999999999999998 899988776664 2 36788999999 89999
Q ss_pred ccchhhccCCCCCC-------cHHHHHHHHHHcCCcHH----------------H-------------HhccCCcccccc
Q 039402 1334 EGTVRSNLDPLEES-------TDEQIWEALDKCQLGDE----------------V-------------RKKEGKLDSKVT 1377 (1496)
Q Consensus 1334 ~gTIR~NLdp~~~~-------sd~eI~~aL~~~~L~~~----------------i-------------~~lp~gLdt~v~ 1377 (1496)
+++|+.||...++. +++.++.+++.++.... + ..+++++++.|+
T Consensus 199 ~~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 99999999643333 56678888887754211 1 124678999999
Q ss_pred cCCCCCCchHHHHHHHHHHHccCCCE--EEEEcCCCCCCHH----H-----HHHHHHHHHHhcCCcEEEEEccCcch
Q 039402 1378 ENGENWSMGQRQLVCLGRVLLKRSKI--LMLDEATASVDTA----T-----DNLIQQTLRQHFSDCTVLTIAHRITS 1443 (1496)
Q Consensus 1378 e~G~nLS~GQrQll~LARALLr~~~I--LiLDEaTsslD~~----T-----d~~Iq~~I~~~f~~~TVI~IAHRl~t 1443 (1496)
+++...|+| ||+++||+++.+|+| +|+||+|+++|.. + +..+|+.++...++.|.+.+|||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 988889999 889999999999999 9999999999965 3 45689999888899999999999974
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.3e-21 Score=209.64 Aligned_cols=169 Identities=13% Similarity=0.086 Sum_probs=110.4
Q ss_pred CCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC-hHHHhcccEEEccccccccc
Q 039402 1257 PQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG-LHDLRSRLSIIPQDPVMFEG 1335 (1496)
Q Consensus 1257 ~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~-l~~LR~~i~iIpQdp~LF~g 1335 (1496)
++..++++| .+|++||.+||+|+||||||||+++|.|+++ .|.+++ ++.... ....|..++++||++.+|..
T Consensus 6 ~~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~ 78 (207)
T 1znw_A 6 PDTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQ 78 (207)
T ss_dssp ---------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECC-CEESSCCCTTCCBTTTBEECCHHHHHH
T ss_pred CCCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcc-cccccCCcccccCCCeeEecCHHHHHH
Confidence 344568999 7999999999999999999999999999985 355554 222221 12346789999999988865
Q ss_pred -chhhccCCC----C-----CCcHHHHHHHHHHc----------CCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1336 -TVRSNLDPL----E-----ESTDEQIWEALDKC----------QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1336 -TIR~NLdp~----~-----~~sd~eI~~aL~~~----------~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
|+++|+.+. + ..+.+++.+.++.. ++.+.....| ..||
T Consensus 79 ~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS----------- 136 (207)
T 1znw_A 79 LIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT----------- 136 (207)
T ss_dssp HHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------
T ss_pred HHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------
Confidence 677776422 1 12344454444332 2222222222 2234
Q ss_pred HHccCCCEEEEEcCCCCC----CHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEe
Q 039402 1396 VLLKRSKILMLDEATASV----DTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLN 1454 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTssl----D~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~ 1454 (1496)
||+.+|++++|||||+++ |+.+.+.+++.+++.. .++|+|+|+|+++.+.. ||+|++|.
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 899999999999999998 6778888888887754 37899999999999876 99999984
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.4e-20 Score=217.23 Aligned_cols=173 Identities=16% Similarity=0.150 Sum_probs=126.1
Q ss_pred eeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC----hHHH--hcccEEEccccc-ccc-cc
Q 039402 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG----LHDL--RSRLSIIPQDPV-MFE-GT 1336 (1496)
Q Consensus 1265 ~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~----l~~L--R~~i~iIpQdp~-LF~-gT 1336 (1496)
.+||++++|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+...+ +..+ |.++++++|++. ++. .|
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 468889999999999999999999999999999999999999999987653 2333 567999999987 554 48
Q ss_pred hhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC--EEEEEcCCCCC
Q 039402 1337 VRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK--ILMLDEATASV 1413 (1496)
Q Consensus 1337 IR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~--ILiLDEaTssl 1413 (1496)
+++|+.... ...|. ..++.+++.+. .+..+ ..|| |||++||||+..+|+ +|||| ||+++
T Consensus 229 v~e~l~~~~~~~~d~---~lldt~Gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 229 LSKAVKRGKEEGYDV---VLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHTTCSE---EEEECCCCSSC-------CHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHhCCCHH---HHHHhcCCChh-------hhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 998875210 00010 11222222111 11111 2377 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEcc---------Ccchhcc-cCEEEEEeCCeEe
Q 039402 1414 DTATDNLIQQTLRQHFSDCTVLTIAH---------RITSVID-SDLVLLLNHGLIE 1459 (1496)
Q Consensus 1414 D~~Td~~Iq~~I~~~f~~~TVI~IAH---------Rl~ti~~-~DrIlVL~~G~Iv 1459 (1496)
|+.+.. +.+++. .+.|+|++|| .++.+.. .+.|..+..|+.+
T Consensus 291 D~~~~~---~~~~~~-~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 291 NMLPQA---REFNEV-VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp GGHHHH---HHHHHH-TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CHHHHH---HHHHHh-cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 998653 222222 3789999999 3344433 6799999999754
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-18 Score=200.63 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=71.6
Q ss_pred CCChHHHHHHHHHHHHc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEE
Q 039402 742 NLSGGQKQRIQIARALY---------QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLIL 812 (1496)
Q Consensus 742 ~LSGGQkqRv~LARAl~---------~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 812 (1496)
.||||||||++|||+|. .+|+|+|||||||+||+.....+++. +... +.|+|++|| .+. .+|+++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~-l~~~--~qt~i~~th-~~~--~~~~i~ 338 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDL-AASV--PQAIVTGTE-LAP--GAALTL 338 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHH-HHHS--SEEEEEESS-CCT--TCSEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHH-HHhc--CcEEEEEEe-ccc--cCCEEE
Confidence 69999999999999999 89999999999999999999888764 4433 279999999 454 899999
Q ss_pred EEeCCeEEEecChHHH
Q 039402 813 VMKDGKITQAGKYNDL 828 (1496)
Q Consensus 813 ~l~~G~i~~~G~~~~l 828 (1496)
+|++|+++..|+++++
T Consensus 339 ~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 339 RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEETTEEEECCCTTTS
T ss_pred EEECCEEEecCCHHHH
Confidence 9999999999998765
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-19 Score=201.64 Aligned_cols=140 Identities=20% Similarity=0.204 Sum_probs=105.1
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-ccEEEECCeeCCCCChHHHhcccE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA-AGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~-~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
++++|+++ +++|+++| +++|+.++|+||||||||||+++|.|+++|+ +|+|.++|.++..+. +..++
T Consensus 6 ~~l~~l~~------~~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~ 73 (261)
T 2eyu_A 6 PEFKKLGL------PDKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKS 73 (261)
T ss_dssp CCGGGSSC------CTHHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSS
T ss_pred CChHHCCC------HHHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcce
Confidence 34556654 25999999 9999999999999999999999999999998 999999998864331 22233
Q ss_pred EEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEE
Q 039402 1325 IIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKIL 1404 (1496)
Q Consensus 1325 iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~IL 1404 (1496)
+++|+ +-|++ ..+| +++|||||..+|+++
T Consensus 74 ~v~q~---------------------------------------~~gl~------~~~l------~~~la~aL~~~p~il 102 (261)
T 2eyu_A 74 IVNQR---------------------------------------EVGED------TKSF------ADALRAALREDPDVI 102 (261)
T ss_dssp EEEEE---------------------------------------EBTTT------BSCH------HHHHHHHHHHCCSEE
T ss_pred eeeHH---------------------------------------HhCCC------HHHH------HHHHHHHHhhCCCEE
Confidence 33331 11222 1222 799999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEe
Q 039402 1405 MLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLN 1454 (1496)
Q Consensus 1405 iLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~ 1454 (1496)
++|||| |.++... .++....+.||++++|..+....|||+++|.
T Consensus 103 llDEp~---D~~~~~~---~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 103 FVGEMR---DLETVET---ALRAAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp EESCCC---SHHHHHH---HHHHHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred EeCCCC---CHHHHHH---HHHHHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 999999 9888543 3444446899999999988666688765543
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=9.5e-21 Score=207.69 Aligned_cols=159 Identities=17% Similarity=0.227 Sum_probs=125.3
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhcccC-------------CCccEEEECCeeCCCCChHHHhcccEEEcccccccccc
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFRIVE-------------PAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGT 1336 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~rl~e-------------p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gT 1336 (1496)
+++|++++||||||||||||+++|.|+++ |..|+ +||+|+..++.+.+|+.+ +|++++|.+|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999986 78898 699999999999999886 7999999999
Q ss_pred hhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH-HHccCCCEEEEEcCCCCCCH
Q 039402 1337 VRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR-VLLKRSKILMLDEATASVDT 1415 (1496)
Q Consensus 1337 IR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR-ALLr~~~ILiLDEaTsslD~ 1415 (1496)
+++|+- + .++++++++++.....-+ .-.++|+++.... ++ .|| +++++|++++|||+|+++|.
T Consensus 76 ~~~n~~--g-~~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 76 FSGNLY--G-TSKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp ETTEEE--E-EEHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred ecCccC--C-CCHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 999982 2 378899999986432111 1123455543211 12 567 89999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeC
Q 039402 1416 ATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNH 1455 (1496)
Q Consensus 1416 ~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~ 1455 (1496)
+|++.|++.|.+..++ +.++| ++ ..+|+|+|+++
T Consensus 140 ~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp SCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999999876554 46788 55 88999999875
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-19 Score=210.96 Aligned_cols=131 Identities=20% Similarity=0.242 Sum_probs=102.8
Q ss_pred ceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHH
Q 039402 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNA 714 (1496)
Q Consensus 635 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~ 714 (1496)
+++++|+++++|+.++|+||||||||||+++|+|+++|++|.|.++|..-+..+ ..++++.+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~-------~~~~~i~~----------- 221 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK-------HHKNYTQL----------- 221 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS-------SCSSEEEE-----------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc-------cchhEEEE-----------
Confidence 789999999999999999999999999999999999999999999885311100 00111100
Q ss_pred HHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCC-c
Q 039402 715 VLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS-K 793 (1496)
Q Consensus 715 v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~-~ 793 (1496)
++ | |||+||++|||||..+||+++||||++. + +. +.+..+..| .
T Consensus 222 -------------~~-------g-------gg~~~r~~la~aL~~~p~ilildE~~~~---e----~~-~~l~~~~~g~~ 266 (330)
T 2pt7_A 222 -------------FF-------G-------GNITSADCLKSCLRMRPDRIILGELRSS---E----AY-DFYNVLCSGHK 266 (330)
T ss_dssp -------------EC-------B-------TTBCHHHHHHHHTTSCCSEEEECCCCST---H----HH-HHHHHHHTTCC
T ss_pred -------------Ee-------C-------CChhHHHHHHHHhhhCCCEEEEcCCChH---H----HH-HHHHHHhcCCC
Confidence 00 1 8999999999999999999999999982 2 22 234444455 4
Q ss_pred EEEEEccCcCccccCCEEEEEeCCe
Q 039402 794 TVIYVTHQVEFLPAADLILVMKDGK 818 (1496)
Q Consensus 794 tvilvtH~~~~l~~~d~i~~l~~G~ 818 (1496)
|+|++||+.+....+|++++|.+|.
T Consensus 267 tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 267 GTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred EEEEEEcccHHHHHhhhheehhcCC
Confidence 8999999999667799999998875
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-19 Score=210.48 Aligned_cols=195 Identities=14% Similarity=0.101 Sum_probs=148.5
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC-------CCh
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL-------IGL 1316 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~-------i~l 1316 (1496)
..++.++++..|..+ ..+|+++ |+|.+||++||+|++|||||||+++|.|+.+|+.|.|.++|.+..+ ++.
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 358899999999743 4599999 9999999999999999999999999999999999999999976221 122
Q ss_pred HHHhcccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccc-cccCCCCCCchHHHHHHHHH
Q 039402 1317 HDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSK-VTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1317 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~-v~e~G~nLS~GQrQll~LAR 1395 (1496)
..+++.+.+++|.+ ....+.+..++..+.+.+.... .|.|.. +-+...+||+|| |++++|
T Consensus 122 ~~~~~~v~~~~~~~---------------~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la- 182 (347)
T 2obl_A 122 STLSKCVLVVTTSD---------------RPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA- 182 (347)
T ss_dssp HHHTTEEEEEECTT---------------SCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred hhhhceEEEEECCC---------------CCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH-
Confidence 22344455555432 1123445555555555554333 232211 124456899999 999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc---CCc-----EEEEEccCcchhcccCEEEEEeCCeEeEecChhhH
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHF---SDC-----TVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f---~~~-----TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
+.+|++ |+++|+.....+.+.+++.. .++ ||++++|+++ -.-||++++|.+|+|+..++++++
T Consensus 183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 688888 99999999999999998865 267 9999999998 444999999999999999998886
Q ss_pred h
Q 039402 1468 L 1468 (1496)
Q Consensus 1468 l 1468 (1496)
.
T Consensus 254 ~ 254 (347)
T 2obl_A 254 N 254 (347)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-20 Score=216.94 Aligned_cols=140 Identities=14% Similarity=0.103 Sum_probs=111.4
Q ss_pred CccEEEEeeEEEecCCCCCCceeeeeEE-----------------------EeCCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 615 ETALDIVDGNFSWDISSHNPTLKDINLK-----------------------VFHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~-----------------------i~~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+..|+++++++.|. |+++++++. +++|++++|+||||||||||+++|.|.++
T Consensus 41 ~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 41 GEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp TCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 34688899999884 567777764 89999999999999999999999999999
Q ss_pred CCccEEEEcCeeEEEccCCccCCCcHHHHhccCC----C--CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCCh
Q 039402 672 KISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGK----E--MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSG 745 (1496)
Q Consensus 672 ~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~----~--~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 745 (1496)
|..|. ..++|++|++.++..|++||+.+.. + .+.++..+.++ .+..|.. .....+|||
T Consensus 116 ~~~G~----~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~---------~l~~~~~---~~~~~~lS~ 179 (312)
T 3aez_A 116 RWDHH----PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVT---------SVKSGSD---YACAPVYSH 179 (312)
T ss_dssp TSTTC----CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHH---------HHHTTCS---CEEEEEEET
T ss_pred ccCCC----CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHH---------HhCCCcc---cCCcccCCh
Confidence 98774 4689999999988789999997532 1 23334333333 3332322 123468999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 039402 746 GQKQRIQIARALYQDSDIYLFDDPFSAVDA 775 (1496)
Q Consensus 746 GQkqRv~LARAl~~~~~illLDep~saLD~ 775 (1496)
|||||+++|||+..+|+|+|||||++.+|+
T Consensus 180 G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 180 LHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 999999999999999999999999999986
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-19 Score=220.78 Aligned_cols=181 Identities=15% Similarity=0.068 Sum_probs=140.9
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++++++.|.. +..+|+++ |++.+||+++|+||||||||||+++|+|..+|++|.|.++|.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 35777888888852 45799999 999999999999999999999999999999999999999875
Q ss_pred --------eEEEccC--CccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 683 --------KAYVAQS--PWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 683 --------~~yv~Q~--~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
++|++|+ +...+.|+.+|+.+.. +|.. .. .++... +=+...+||||| |||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a-----e~~~---~~--~~~v~~--------~ld~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA-----EDFR---DR--GQHVLL--------IMDSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH-----HHHH---TT--TCEEEE--------EEECHHHHHHHH-HHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH-----HHHH---hC--CCCHHH--------HHHhHHHHHHHH-HHHH
Confidence 4899995 3344568899987742 1211 00 011111 112356899999 9999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-----Cc-----EEEEEccCcCccccCCEEEEEeCCeEEEe
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-----SK-----TVIYVTHQVEFLPAADLILVMKDGKITQA 822 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-----~~-----tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 822 (1496)
|| ..+|++ |+|||+.+...+.+ ++..+.+ |+ ||+++|||++ .+.||++++|.+|+|+.+
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~-ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPA-LVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLS 336 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHH-HHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEEC
T ss_pred HH---hCCCcc------cccCCHHHHHHHHH-HHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEe
Confidence 99 788888 99999999888754 5544433 54 9999999999 666999999999999999
Q ss_pred cChHHHH
Q 039402 823 GKYNDLI 829 (1496)
Q Consensus 823 G~~~~l~ 829 (1496)
|++.++.
T Consensus 337 ~~~~~~~ 343 (438)
T 2dpy_A 337 RRLAEAG 343 (438)
T ss_dssp HHHHHTT
T ss_pred CCHHHcc
Confidence 9876653
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.7e-18 Score=211.82 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=71.0
Q ss_pred CCC-CchHHHHHHHHHHHccCC--CEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCC
Q 039402 1381 ENW-SMGQRQLVCLGRVLLKRS--KILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHG 1456 (1496)
Q Consensus 1381 ~nL-S~GQrQll~LARALLr~~--~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G 1456 (1496)
..| |||||||++||||++.+| ++|||||||++||+.+...|.+.|++..+++|||+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 346 999999999999999999 9999999999999999999999999877789999999999988889999999655
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-19 Score=202.97 Aligned_cols=139 Identities=15% Similarity=0.151 Sum_probs=88.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe----------eEEEccCCccCCC-cHHHHhccCCCCCHHHHHHHH
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----------KAYVAQSPWIQSG-KIEDNILFGKEMNRERYNAVL 716 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~----------~~yv~Q~~~i~~~-ti~eNI~~g~~~~~~~~~~v~ 716 (1496)
.++|+||||||||||+++|+|...|++|+|.++|. ++|++|++.++.. |+.||+.||...+.+...+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 48999999999999999999999999999988763 6999999987654 999999998754321111111
Q ss_pred HHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEE
Q 039402 717 DACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVI 796 (1496)
Q Consensus 717 ~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvi 796 (1496)
......+..+. ...+||||||||+++|||+.. +|+||||+++||+... .+ ++.+.+..++|
T Consensus 84 ~~~~~~~~~~~-----------~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~----l~~L~~~~~vI 144 (270)
T 3sop_A 84 EKYINEQYEKF-----------LKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EF----MKHLSKVVNII 144 (270)
T ss_dssp HHHHHHHHHHH-----------HHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HH----HHHHHTTSEEE
T ss_pred HHHHHHHHHhh-----------hHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HH----HHHHHhcCcEE
Confidence 11111111111 224799999999999999875 9999999999999762 22 33333348999
Q ss_pred EEccCcCcc
Q 039402 797 YVTHQVEFL 805 (1496)
Q Consensus 797 lvtH~~~~l 805 (1496)
+|.|..+.+
T Consensus 145 ~Vi~K~D~l 153 (270)
T 3sop_A 145 PVIAKADTM 153 (270)
T ss_dssp EEETTGGGS
T ss_pred EEEeccccC
Confidence 999987665
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.70 E-value=7.4e-17 Score=191.60 Aligned_cols=81 Identities=25% Similarity=0.348 Sum_probs=67.7
Q ss_pred CCCCCCChHHHH------HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEE
Q 039402 738 ERGINLSGGQKQ------RIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLI 811 (1496)
Q Consensus 738 ~~g~~LSGGQkq------Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 811 (1496)
....+||||||| |+++|||+..+|+++||||||++||+.....+++.+.....+++|+|+|||+.+....||++
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 323 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEE
Confidence 456789999999 67888999999999999999999999999888764333334578999999998777779999
Q ss_pred EEEe--CCe
Q 039402 812 LVMK--DGK 818 (1496)
Q Consensus 812 ~~l~--~G~ 818 (1496)
++|+ +|.
T Consensus 324 ~~l~~~~g~ 332 (339)
T 3qkt_A 324 IRISLENGS 332 (339)
T ss_dssp EEEEEETTE
T ss_pred EEEEecCCc
Confidence 9986 454
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-19 Score=223.77 Aligned_cols=171 Identities=16% Similarity=0.132 Sum_probs=121.3
Q ss_pred EeCCCCCccceeeeE-EeeCCcEEEEEcCCCCCHHHHHHH--HhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccc
Q 039402 1254 RYAPQMPLVLQGISC-TFPGGEKTGIVGRTGSGKSTLIQT--LFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDP 1330 (1496)
Q Consensus 1254 ~Y~~~~~~vLk~iS~-~I~~GekvgIVGrTGSGKSTLl~~--L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp 1330 (1496)
+|+.+ .++|++||| .|++||.++|+|+||||||||++. +.|+.+|.+|.|+++|.+. .......++++++++|++
T Consensus 20 ~~~~g-~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 20 KMRTM-IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKL 97 (525)
T ss_dssp EECCC-CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHH
T ss_pred cccCC-chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHh
Confidence 45544 459999999 999999999999999999999999 6899999999999999883 334455677899999998
Q ss_pred cccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc-cCCCEEEEEcC
Q 039402 1331 VMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL-KRSKILMLDEA 1409 (1496)
Q Consensus 1331 ~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL-r~~~ILiLDEa 1409 (1496)
... +++.. +++.. +++.+++++..++.+ ++-.+.++|- .+|++|+||||
T Consensus 98 ~~~-~~l~~-~~~~~---~~~~~~~l~~~~l~~-------------------------~~~~~~~~LS~g~~~~lilDe~ 147 (525)
T 1tf7_A 98 VDE-GKLFI-LDASP---DPEGQEVVGGFDLSA-------------------------LIERINYAIQKYRARRVSIDSV 147 (525)
T ss_dssp HHT-TSEEE-EECCC---CSSCCSCCSSHHHHH-------------------------HHHHHHHHHHHHTCSEEEEECS
T ss_pred hcc-CcEEE-EecCc---ccchhhhhcccCHHH-------------------------HHHHHHHHHHHcCCCEEEECCH
Confidence 631 11111 11111 000111111111111 2222333332 35789999999
Q ss_pred CCC-----CCHHHHHHHHHHHHHhc-CCcEEEEEccCcchh---------cc-cCEEEEEeCC
Q 039402 1410 TAS-----VDTATDNLIQQTLRQHF-SDCTVLTIAHRITSV---------ID-SDLVLLLNHG 1456 (1496)
Q Consensus 1410 Tss-----lD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti---------~~-~DrIlVL~~G 1456 (1496)
|+. +|+...+.+.+.+++.. .++|||+|+|+++.+ .. ||+|++|++|
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 984 58899889998887653 489999999999885 34 9999999993
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-18 Score=201.69 Aligned_cols=161 Identities=11% Similarity=0.079 Sum_probs=114.3
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------------eEEEccCCc-cC-CC
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------------KAYVAQSPW-IQ-SG 695 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------------~~yv~Q~~~-i~-~~ 695 (1496)
+++||++++|++++|+||||||||||++.|+|.++|++|+|.+.|. ++|++|++. .+ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4578889999999999999999999999999999999999998762 589999886 54 45
Q ss_pred cHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEecCCCCC
Q 039402 696 KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD--IYLFDDPFSAV 773 (1496)
Q Consensus 696 ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~--illLDep~saL 773 (1496)
|++||+.++.... +. ..-++. .|..........+|| |||++||||+..+|+ +++|| ||+++
T Consensus 171 ~v~e~l~~~~~~~----------~d-~~lldt--~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 171 VLSKAVKRGKEEG----------YD-VVLCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 233 (302)
T ss_dssp HHHHHHHHHHHTT----------CS-EEEECC--CCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHHHcC----------Cc-chHHhc--CCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence 8999987642100 00 000111 111111223345688 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEccCcC---------cccc-CCEEEEEeCCeE
Q 039402 774 DAHTGSHLFQEVLLGLLSSKTVIYVTHQVE---------FLPA-ADLILVMKDGKI 819 (1496)
Q Consensus 774 D~~~~~~i~~~~~~~~~~~~tvilvtH~~~---------~l~~-~d~i~~l~~G~i 819 (1496)
|+.....-| . ...+.|+|++||.-+ .... .+.|.++..|+.
T Consensus 234 D~~~~~~~~----~-~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 234 NMLPQAREF----N-EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGHHHHHHH----H-HHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CHHHHHHHH----H-HhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 997543211 1 124899999999322 2222 567888888853
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-17 Score=192.43 Aligned_cols=181 Identities=13% Similarity=0.119 Sum_probs=120.6
Q ss_pred ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCcc-EEEECCeeCCCCChHHHhcccEEEcccccccccchhh
Q 039402 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG-QILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRS 1339 (1496)
Q Consensus 1261 ~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G-~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~ 1339 (1496)
++|+++++.+++||.++|+||+|||||||++.|.+...|.+| +|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 479999999999999999999999999999999999999878 77665544 3566777777666655432 1122
Q ss_pred ccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH-HHHHHHHHHHccCCCEEEEEcCCC---C---
Q 039402 1340 NLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ-RQLVCLGRVLLKRSKILMLDEATA---S--- 1412 (1496)
Q Consensus 1340 NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ-rQll~LARALLr~~~ILiLDEaTs---s--- 1412 (1496)
|+.. ...++++..++.+.. +.. .++ .+.+...++|.+| +|++. |+++..+|++||+||||+ +
T Consensus 97 ~l~~-~~~~~~~~~~~~~~~-----l~~--~~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKR-EIIENGKFDQWFDEL-----FGN--DTF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHH-HHHHHTHHHHHHHHH-----HSS--SCE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred cccc-CCCCHHHHHHHHHHH-----hcc--CCE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 2211 011223333322221 111 111 1223334689999 66666 999999999999999999 4
Q ss_pred CCH-HHHHHHHHHHHHhc--CCcEEEEEccCc--c--------------------hhc-ccCEEEEEeCCeE
Q 039402 1413 VDT-ATDNLIQQTLRQHF--SDCTVLTIAHRI--T--------------------SVI-DSDLVLLLNHGLI 1458 (1496)
Q Consensus 1413 lD~-~Td~~Iq~~I~~~f--~~~TVI~IAHRl--~--------------------ti~-~~DrIlVL~~G~I 1458 (1496)
+|. .....+.+.|++.. .++|||+++|.. + .+. .||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 344 44456777776654 289999999995 4 454 5999999999985
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-17 Score=216.57 Aligned_cols=173 Identities=13% Similarity=0.140 Sum_probs=123.5
Q ss_pred cceEEEEe-----EEeEeCCCCCccceeeeEEeeC-------CcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCee
Q 039402 1243 HGKIDLLD-----LQVRYAPQMPLVLQGISCTFPG-------GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGID 1310 (1496)
Q Consensus 1243 ~g~I~f~n-----vs~~Y~~~~~~vLk~iS~~I~~-------GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~d 1310 (1496)
.+.|+++| |+++|..+ ..|++|++|++++ |+.++|+|||||||||+++.+ |+..+
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred CceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 34699999 99999533 4699999999987 999999999999999999999 99863
Q ss_pred CCCCChHHHhcccE-EEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1311 ISLIGLHDLRSRLS-IIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1311 I~~i~l~~LR~~i~-iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
+.++| +|||++. .-|+.+|+-- +.++.+.+. .| -+.+|+|+++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~--------------rig~~d~~~---~~--------~stf~~em~~ 858 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFT--------------RLGASDRIM---SG--------ESTFFVELSE 858 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEE--------------ECC--------------------CHHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHH--------------HcCCHHHHh---hc--------hhhhHHHHHH
Confidence 34566 9999984 5577777621 122222221 12 2346777665
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHH-HHHHHHHHHHhc-C-CcEEEEEccCcchhcc-cCEEEEEeCCeEe--EecC
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTAT-DNLIQQTLRQHF-S-DCTVLTIAHRITSVID-SDLVLLLNHGLIE--EFDN 1463 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~T-d~~Iq~~I~~~f-~-~~TVI~IAHRl~ti~~-~DrIlVL~~G~Iv--E~g~ 1463 (1496)
+++||+++.+|+++||||||+++|+.. ...+++.|+... + ++|+|++||.++.+.. ||++.|+ +|+++ +.|+
T Consensus 859 -~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~ 936 (1022)
T 2o8b_B 859 -TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENE 936 (1022)
T ss_dssp -HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC----
T ss_pred -HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecC
Confidence 999999999999999999999999887 466777777654 3 8999999999998875 8999887 58887 5555
Q ss_pred hhh
Q 039402 1464 PAN 1466 (1496)
Q Consensus 1464 p~~ 1466 (1496)
+++
T Consensus 937 ~~~ 939 (1022)
T 2o8b_B 937 CED 939 (1022)
T ss_dssp ---
T ss_pred ccc
Confidence 543
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-17 Score=218.41 Aligned_cols=171 Identities=13% Similarity=0.108 Sum_probs=123.1
Q ss_pred ccEEEEe-----eEEEecCCCCCCceeeeeEEEeC-------CcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCee
Q 039402 616 TALDIVD-----GNFSWDISSHNPTLKDINLKVFH-------GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK 683 (1496)
Q Consensus 616 ~~i~~~~-----~~~~~~~~~~~~~L~~i~l~i~~-------G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~ 683 (1496)
..+++++ +++.|. +++++++|++|++++ |++++|+|||||||||||+++ |.+.+. .++
T Consensus 749 ~~l~i~~~rHP~l~~~~~--~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~-------aqi 818 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFF--GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM-------AQM 818 (1022)
T ss_dssp CCEEEEEECCCC--------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH-------HTT
T ss_pred ceEEEEeccccEEEEEec--CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH-------hhe
Confidence 4689999 888773 246899999999987 999999999999999999999 988752 345
Q ss_pred E-EEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 039402 684 A-YVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762 (1496)
Q Consensus 684 ~-yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1496)
| ||||++. ..|+.|||...- ++.+++ ..+..++|+|+++ +++|+++..+|+
T Consensus 819 G~~Vpq~~~--~l~v~d~I~~ri--------------g~~d~~-----------~~~~stf~~em~~-~a~al~la~~~s 870 (1022)
T 2o8b_B 819 GCYVPAEVC--RLTPIDRVFTRL--------------GASDRI-----------MSGESTFFVELSE-TASILMHATAHS 870 (1022)
T ss_dssp TCCEESSEE--EECCCSBEEEEC--------------C--------------------CHHHHHHHH-HHHHHHHCCTTC
T ss_pred eEEeccCcC--CCCHHHHHHHHc--------------CCHHHH-----------hhchhhhHHHHHH-HHHHHHhCCCCc
Confidence 5 9999874 457778875311 111111 1223567887775 999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHh-C-CcEEEEEccCcCcccc-CCEEEEEeCCeEE--EecCh
Q 039402 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLL-S-SKTVIYVTHQVEFLPA-ADLILVMKDGKIT--QAGKY 825 (1496)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~--~~G~~ 825 (1496)
++|||||++|+|+..+..+...+++.+. + |.|+|++||+.+.... +|++.++ +|++. ..|+.
T Consensus 871 LlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 871 LVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 9999999999999987666556666553 4 8999999999998765 8988886 58877 44443
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=180.35 Aligned_cols=75 Identities=19% Similarity=0.191 Sum_probs=66.8
Q ss_pred CCCCCchHHH------HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEE
Q 039402 1380 GENWSMGQRQ------LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLL 1452 (1496)
Q Consensus 1380 G~nLS~GQrQ------ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlV 1452 (1496)
...||||||| |+++|||++.+|++|+|||||++||+.+...+.+.|++.. .++|||+|+|+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 3579999999 6788899999999999999999999999999999998854 46799999999776667999999
Q ss_pred Ee
Q 039402 1453 LN 1454 (1496)
Q Consensus 1453 L~ 1454 (1496)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 86
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-18 Score=202.45 Aligned_cols=160 Identities=11% Similarity=0.091 Sum_probs=115.3
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------------eEEEccCCc-cC-CC
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------------KAYVAQSPW-IQ-SG 695 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------------~~yv~Q~~~-i~-~~ 695 (1496)
.++||++++|++++|+||||||||||++.|+|.++|.+|+|.+.|. ++|++|++. .+ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578889999999999999999999999999999999999998762 589999886 44 45
Q ss_pred cHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEecCCCCC
Q 039402 696 KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD--IYLFDDPFSAV 773 (1496)
Q Consensus 696 ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~--illLDep~saL 773 (1496)
|++||+.++.... +. ..-++. .|......+...+|| |||++||||+..+|+ +++|| ||+++
T Consensus 228 tv~e~l~~~~~~~----------~d-~~lldt--~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 228 VLSKAVKRGKEEG----------YD-VVLCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHHTT----------CS-EEEEEC--CCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred hHHHHHHHHHhCC----------CH-HHHHHh--cCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 8999987642100 00 000111 111111123345688 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEccCc---------Ccccc-CCEEEEEeCCe
Q 039402 774 DAHTGSHLFQEVLLGLLSSKTVIYVTHQV---------EFLPA-ADLILVMKDGK 818 (1496)
Q Consensus 774 D~~~~~~i~~~~~~~~~~~~tvilvtH~~---------~~l~~-~d~i~~l~~G~ 818 (1496)
|+.....-|. ...+.|+|++||.- +.... .+.|..+..|+
T Consensus 291 D~~~~~~~~~-----~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 291 NMLPQAREFN-----EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp GGHHHHHHHH-----HHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CHHHHHHHHH-----HhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 9986432221 12489999999932 22222 56788888875
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.65 E-value=6.7e-19 Score=194.37 Aligned_cols=165 Identities=15% Similarity=0.145 Sum_probs=99.2
Q ss_pred CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE---------cCeeEEEccCCccCC-CcHHHHh
Q 039402 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL---------CGTKAYVAQSPWIQS-GKIEDNI 701 (1496)
Q Consensus 632 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~---------~g~~~yv~Q~~~i~~-~ti~eNI 701 (1496)
..++++| .++++|++++|+||||||||||+++|+|+++...+.+.+ ...++|++|++..+. .|+.+|+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l 85 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGEL 85 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCc
Confidence 4578888 799999999999999999999999999998632222111 123689999987654 3666666
Q ss_pred cc-----C--C--CCCHHHHHHHHHHh-chhhHHHhccCCCcccccCCCCCCChHHHHHHHHHH---HHccCCCEEEEec
Q 039402 702 LF-----G--K--EMNRERYNAVLDAC-SLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR---ALYQDSDIYLFDD 768 (1496)
Q Consensus 702 ~~-----g--~--~~~~~~~~~v~~~~-~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR---Al~~~~~illLDe 768 (1496)
.. + . ....+..++.++.. .+.. ..++.|.+.++-..++ |++.+|++++|||
T Consensus 86 ~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~----------------~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDe 149 (207)
T 1znw_A 86 LEWAEIHGGLHRSGTLAQPVRAAAATGVPVLI----------------EVDLAGARAIKKTMPEAVTVFLAPPSWQDLQA 149 (207)
T ss_dssp EEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEE----------------ECCHHHHHHHHHHCTTSEEEEEECSCHHHHHH
T ss_pred eeehhhcCchhhcCCcHHHHHHHHHcCCeEEE----------------EeCHHHHHHHHHhcCCcEEEEEECCCHHHHHH
Confidence 42 1 1 11222222222221 0000 0123333333333333 8899999999999
Q ss_pred CCCCC----CHHHHHHHHHHHHHHHh--CCcEEEEEccCcCcccc-CCEEEEEe
Q 039402 769 PFSAV----DAHTGSHLFQEVLLGLL--SSKTVIYVTHQVEFLPA-ADLILVMK 815 (1496)
Q Consensus 769 p~saL----D~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~ 815 (1496)
||+++ |+...+++.+ .+..+. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 150 p~~~l~~~~d~~~~~~l~~-~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 150 RLIGRGTETADVIQRRLDT-ARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHTTSCSCHHHHHHHHHH-HHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHhcCCCCHHHHHHHHHH-HHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99998 6777777754 444442 47999999999998765 99999985
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=7.6e-18 Score=202.26 Aligned_cols=147 Identities=14% Similarity=0.174 Sum_probs=110.0
Q ss_pred cceeeeEEeeC--CcEEEEEcCCCCCHHHHHHHHhcccCCCc----cEEEE----CCeeCCCCChHHHhcccEEEccccc
Q 039402 1262 VLQGISCTFPG--GEKTGIVGRTGSGKSTLIQTLFRIVEPAA----GQILI----DGIDISLIGLHDLRSRLSIIPQDPV 1331 (1496)
Q Consensus 1262 vLk~iS~~I~~--GekvgIVGrTGSGKSTLl~~L~rl~ep~~----G~I~I----DG~dI~~i~l~~LR~~i~iIpQdp~ 1331 (1496)
+.+.|+++|++ |+++||+|+||||||||+++|.|+++|++ |+|++ +|.++ .+...++ .+|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999 99987 46666 5666677 56999999999
Q ss_pred ccccchhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCC--ccc--------ccccCCCCCCchHHHHHHHHHHH---
Q 039402 1332 MFEGTVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGK--LDS--------KVTENGENWSMGQRQLVCLGRVL--- 1397 (1496)
Q Consensus 1332 LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~g--Ldt--------~v~e~G~nLS~GQrQll~LARAL--- 1397 (1496)
+|.+|+++||..+. ...+...+..+...+....+...+.+ .|. +..++|.++|+||+||.+++|+|
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l 314 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL 314 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence 99999999997543 34456677766666667776665432 333 33366778888999999999988
Q ss_pred cc--CCCEEEEEcCC
Q 039402 1398 LK--RSKILMLDEAT 1410 (1496)
Q Consensus 1398 Lr--~~~ILiLDEaT 1410 (1496)
++ +++|+++||||
T Consensus 315 ~~~~~~~ililde~~ 329 (365)
T 1lw7_A 315 LDKYKVPYIEIESPS 329 (365)
T ss_dssp HHGGGCCCEEEECSS
T ss_pred HHHcCCCEEEeCCCC
Confidence 76 78899999886
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-17 Score=196.10 Aligned_cols=193 Identities=17% Similarity=0.179 Sum_probs=133.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeE----EEccCCcc
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----YVAQSPWI 692 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~----yv~Q~~~i 692 (1496)
.++++++++.|.. +..+++++ |+|.+||+++|+||||||||||+++|+|..+|+.|.|.+.|... ...+. +
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~--~ 119 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL--L 119 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTT--S
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHh--h
Confidence 4677788888852 45799999 99999999999999999999999999999999999888776320 00000 0
Q ss_pred CCCcHHHHhccCCCC---CHHHHHHHHHHhchhhHHHhccCCCc-ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEec
Q 039402 693 QSGKIEDNILFGKEM---NRERYNAVLDACSLKKDLEILSFGDQ-TVIGERGINLSGGQKQRIQIARALYQDSDIYLFDD 768 (1496)
Q Consensus 693 ~~~ti~eNI~~g~~~---~~~~~~~v~~~~~l~~d~~~l~~g~~-t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDe 768 (1496)
.....+..+.+.... ..+++......+.+.+.+.. .|.+ -.+-+...+||+|| |||++| ..+|++
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~----- 188 (347)
T 2obl_A 120 PQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV----- 188 (347)
T ss_dssp CHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC-----
T ss_pred hhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc-----
Confidence 000011112221111 13445555555554433222 1211 11124567899999 899999 578887
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh---CCc-----EEEEEccCcCccccCCEEEEEeCCeEEEecChHHH
Q 039402 769 PFSAVDAHTGSHLFQEVLLGLL---SSK-----TVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 769 p~saLD~~~~~~i~~~~~~~~~---~~~-----tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l 828 (1496)
|+|+|+.....+.+ +++.+. .|. ||+++|||++ -+.||++++|.+|+|+.+|+.+++
T Consensus 189 -t~Gldp~~~~~l~~-ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 189 -RGGFPPSVFSSLPK-LLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp -BTTBCHHHHHHHHH-HHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred -ccCCCHHHHHHHHH-HHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 99999999887754 555443 366 9999999998 455999999999999998877654
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-18 Score=194.45 Aligned_cols=166 Identities=13% Similarity=0.158 Sum_probs=106.8
Q ss_pred CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchh
Q 039402 1259 MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVR 1338 (1496)
Q Consensus 1259 ~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR 1338 (1496)
...+|+|+||++++|+.|||+|++|||||||++.|.+++ |.+.+| ..+++++++|||++...-|++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 346999999999999999999999999999999999976 655554 467889999999744445888
Q ss_pred hccCC------CC---CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcC
Q 039402 1339 SNLDP------LE---ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEA 1409 (1496)
Q Consensus 1339 ~NLdp------~~---~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEa 1409 (1496)
+|+.. +. ....+++.+.|+. +..+.+..+ ..+|+||+||+++ ++++.+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 87531 11 1223344455443 123334333 4689999999988 688899999999998
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchh-cc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1410 TASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSV-ID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1410 TsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti-~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
....|.. +++. .+.||+++||....+ .. ++.+ ++|+ +++++++
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 8777653 2332 489999999974333 32 3333 6675 6677764
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-17 Score=193.96 Aligned_cols=167 Identities=20% Similarity=0.139 Sum_probs=120.1
Q ss_pred cceee-eEEeeCCcEEEEEcCCCCCHHHHHHHHhccc--CCCc----cE-EEECCeeCCCCChHHHhcccEEEccccccc
Q 039402 1262 VLQGI-SCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV--EPAA----GQ-ILIDGIDISLIGLHDLRSRLSIIPQDPVMF 1333 (1496)
Q Consensus 1262 vLk~i-S~~I~~GekvgIVGrTGSGKSTLl~~L~rl~--ep~~----G~-I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF 1333 (1496)
.|+.+ .+.|++|+.++|+|++|||||||++.+.+.+ +|++ |+ |+||+.+.. .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 45555 5899999999999999999999999999998 6666 68 999997752 267889999999888
Q ss_pred ccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc-------cCCCEEEE
Q 039402 1334 EGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL-------KRSKILML 1406 (1496)
Q Consensus 1334 ~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL-------r~~~ILiL 1406 (1496)
..|+++|+.....++ |.+|+|++.++++++ .+|++||+
T Consensus 193 ~~~v~~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 193 PDEVLKHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp HHHHGGGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred HHHHhhCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 889999986432211 346778888888877 68999999
Q ss_pred EcCCCCCCHHH-------H-----HHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1407 DEATASVDTAT-------D-----NLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1407 DEaTsslD~~T-------d-----~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
||||+.+|++. + ..+.+.|++.. .++|||+++|....+.. ++.+.+...|++++++.+..|.-
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~l 315 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYL 315 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEEE
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEEE
Confidence 99999999863 1 22333334332 38999999998775532 34577888999999998888753
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.7e-17 Score=190.54 Aligned_cols=147 Identities=20% Similarity=0.181 Sum_probs=111.2
Q ss_pred EeEEeEeCCCCCccceeeeE-------EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-ccEEEECCeeCCCCChHHHh
Q 039402 1249 LDLQVRYAPQMPLVLQGISC-------TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA-AGQILIDGIDISLIGLHDLR 1320 (1496)
Q Consensus 1249 ~nvs~~Y~~~~~~vLk~iS~-------~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~-~G~I~IDG~dI~~i~l~~LR 1320 (1496)
.++++||.+..++.|+++.+ ...+|+.++|+||||||||||+++|.|+++|+ +|.|...+-++ .+. ++
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 67889997766778888876 78899999999999999999999999999987 56665544333 222 34
Q ss_pred cccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccC
Q 039402 1321 SRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1400 (1496)
Q Consensus 1321 ~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~ 1400 (1496)
...++++|.+.-... + + ..+ +|||||..+
T Consensus 168 ~~~~~v~q~~~~~~~-----~------~------------------------------------~~~----~La~aL~~~ 196 (356)
T 3jvv_A 168 SKKCLVNQREVHRDT-----L------G------------------------------------FSE----ALRSALRED 196 (356)
T ss_dssp CSSSEEEEEEBTTTB-----S------C------------------------------------HHH----HHHHHTTSC
T ss_pred ccccceeeeeecccc-----C------C------------------------------------HHH----HHHHHhhhC
Confidence 455667776532210 0 0 000 999999999
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCC
Q 039402 1401 SKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHG 1456 (1496)
Q Consensus 1401 ~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G 1456 (1496)
|++|++|||| |.++.+.+.+.. ..|+|||+++|..+.+..|||+++|..|
T Consensus 197 PdvillDEp~---d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 197 PDIILVGEMR---DLETIRLALTAA---ETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp CSEEEESCCC---SHHHHHHHHHHH---HTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred cCEEecCCCC---CHHHHHHHHHHH---hcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999999 888766555543 3589999999999999889999888543
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-16 Score=204.15 Aligned_cols=168 Identities=14% Similarity=0.083 Sum_probs=119.3
Q ss_pred ccEEEEeeEEEecC--CCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHH--------hcCCCCCccEEEEcCeeEE
Q 039402 616 TALDIVDGNFSWDI--SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI--------LGEVPKISGTLKLCGTKAY 685 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~--~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~i--------lG~~~~~~G~i~~~g~~~y 685 (1496)
..+.++++.--+-. .+.+.+++|++|++++|++++|+|||||||||||+++ .|.+.|.++.. ++.
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-----~~~ 704 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-----VSI 704 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-----EEC
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-----chH
Confidence 34677665332211 1245789999999999999999999999999999999 66555543321 110
Q ss_pred EccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCE
Q 039402 686 VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL--YQDSDI 763 (1496)
Q Consensus 686 v~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl--~~~~~i 763 (1496)
+ +.|+ ...++.++ ....+|+|++++..+|+++ ..+|++
T Consensus 705 ~------------d~i~--------------~~ig~~d~--------------l~~~lStf~~e~~~~a~il~~a~~~sL 744 (934)
T 3thx_A 705 V------------DCIL--------------ARVGAGDS--------------QLKGVSTFMAEMLETASILRSATKDSL 744 (934)
T ss_dssp C------------SEEE--------------EECC-----------------------CHHHHHHHHHHHHHHHCCTTCE
T ss_pred H------------HHHH--------------HhcCchhh--------------HHHhHhhhHHHHHHHHHHHHhccCCcE
Confidence 0 1110 00011111 1245888888888888888 899999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHh--CCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHH
Q 039402 764 YLFDDPFSAVDAHTGSHLFQEVLLGLL--SSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 764 llLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l 828 (1496)
+|||||++|+|+..+..+...+++.+. .|+|+|++||+.+....||++..+++|++...++.+++
T Consensus 745 lLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 745 IIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp EEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 999999999999998888666666553 38999999999888878999999999999887776554
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=186.18 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=68.0
Q ss_pred CCCchHHHHHHHHHHHc----cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEccCcchhcccCEEEEEeC
Q 039402 1382 NWSMGQRQLVCLGRVLL----KRSKILMLDEATASVDTATDNLIQQTLRQHFS-DCTVLTIAHRITSVIDSDLVLLLNH 1455 (1496)
Q Consensus 1382 nLS~GQrQll~LARALL----r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~-~~TVI~IAHRl~ti~~~DrIlVL~~ 1455 (1496)
.|||||||+++|||+|. ++|++++|||||++||+.....+.+.|++... +.|+|+|+|+...+..||+++++..
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYR 411 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEEE
Confidence 49999999999999999 68999999999999999999999999988653 6899999999888888999999963
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.7e-17 Score=184.95 Aligned_cols=131 Identities=17% Similarity=0.159 Sum_probs=100.9
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCC-ccEEEEcCe-eEEEccCCccCCCcHHHHhccCCCCCHHH
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI-SGTLKLCGT-KAYVAQSPWIQSGKIEDNILFGKEMNRER 711 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~-~G~i~~~g~-~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~ 711 (1496)
++|+|+| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|. +.|++|++.- +
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~----------~-------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKS----------I-------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS----------E--------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcce----------e--------
Confidence 5899999 9999999999999999999999999999998 999988763 4555554210 0
Q ss_pred HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC
Q 039402 712 YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS 791 (1496)
Q Consensus 712 ~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~ 791 (1496)
.. +..+|....+| |++|||||.++||++++|||+ |+++...+. +....
T Consensus 75 ---------v~----------q~~~gl~~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l----~~~~~ 122 (261)
T 2eyu_A 75 ---------VN----------QREVGEDTKSF------ADALRAALREDPDVIFVGEMR---DLETVETAL----RAAET 122 (261)
T ss_dssp ---------EE----------EEEBTTTBSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH----HHHHT
T ss_pred ---------ee----------HHHhCCCHHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH----HHHcc
Confidence 00 00122222233 899999999999999999999 998865443 33456
Q ss_pred CcEEEEEccCcCccccCCEEEEEeC
Q 039402 792 SKTVIYVTHQVEFLPAADLILVMKD 816 (1496)
Q Consensus 792 ~~tvilvtH~~~~l~~~d~i~~l~~ 816 (1496)
|.||+++||+.+....+|+++.|..
T Consensus 123 g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 123 GHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp TCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred CCEEEEEeCcchHHHHHHHHhhhcC
Confidence 9999999999886666899888854
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-17 Score=178.57 Aligned_cols=171 Identities=16% Similarity=0.178 Sum_probs=108.7
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc-----CCCccEEEE-------CCeeC-
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV-----EPAAGQILI-------DGIDI- 1311 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~-----ep~~G~I~I-------DG~dI- 1311 (1496)
.|+++|++++|.. +++++ |++++|++++|+|++|||||||++.|.|.. .|+.|.+.+ ++..+
T Consensus 3 ~l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 3 NLNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp --------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred chhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 3789999999962 48888 899999999999999999999999999998 888888765 23322
Q ss_pred --CCCC--------hHHHhcccEEEccccccccc-chhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCC
Q 039402 1312 --SLIG--------LHDLRSRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380 (1496)
Q Consensus 1312 --~~i~--------l~~LR~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1380 (1496)
.... .+.+|+.++.+.|++..+++ ++..++.-.....++++.+.++..++.. ..+...-
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----------~~v~nK~ 147 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAV----------LVLLTKA 147 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE----------EEEEECG
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCe----------EEEEecc
Confidence 2211 13455556666665444433 4444443222223445655555433211 1134444
Q ss_pred CCCCchHHHH-HHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC
Q 039402 1381 ENWSMGQRQL-VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS 1430 (1496)
Q Consensus 1381 ~nLS~GQrQl-l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~ 1430 (1496)
..+|+||||+ +..+|+++++++++++|||||++|...-..+.+.|.+..+
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 5689999999 8999999999999999999999999999999988887653
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.7e-16 Score=173.63 Aligned_cols=148 Identities=21% Similarity=0.192 Sum_probs=100.3
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-------CccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhcc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-------AAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL 1341 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-------~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NL 1341 (1496)
-|++||.++|+||||||||||++.|.+.+.| .+|.|++++.+.. . +.+++.++|+..++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--C----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--C----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999996655 4558889886531 1 2456777888777767888887
Q ss_pred CCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc-------CCCEEEEEcCCCCCC
Q 039402 1342 DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK-------RSKILMLDEATASVD 1414 (1496)
Q Consensus 1342 dp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr-------~~~ILiLDEaTsslD 1414 (1496)
......+.. .|++.+..+++++. +|++|+|||||+.+|
T Consensus 95 ~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVARAFNSN-----------------------------------HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEECCSHH-----------------------------------HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEecCChH-----------------------------------HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 543222211 22233344444443 899999999999999
Q ss_pred HHH-------H-----HHHHHHHHHhc--CCcEEEEEcc----Ccchhcc-cCEEEEEeCCe
Q 039402 1415 TAT-------D-----NLIQQTLRQHF--SDCTVLTIAH----RITSVID-SDLVLLLNHGL 1457 (1496)
Q Consensus 1415 ~~T-------d-----~~Iq~~I~~~f--~~~TVI~IAH----Rl~ti~~-~DrIlVL~~G~ 1457 (1496)
++. + ..+.+.|++.. .++|||+|+| .-..+.. ||++++|++|+
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 842 1 13444444332 3899999999 4444765 99999999863
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-18 Score=188.09 Aligned_cols=139 Identities=19% Similarity=0.215 Sum_probs=109.2
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEccccccccc---chhhccCC-C-
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEG---TVRSNLDP-L- 1344 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~g---TIR~NLdp-~- 1344 (1496)
.++|+++||+|++|||||||+++|.|++.| ++++++||+++++. |+++|+.. +
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 68999999999854 56665421 1
Q ss_pred --CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH----HHHHHHHHHHccCCCEEEEEcCCCC------
Q 039402 1345 --EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ----RQLVCLGRVLLKRSKILMLDEATAS------ 1412 (1496)
Q Consensus 1345 --~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ----rQll~LARALLr~~~ILiLDEaTss------ 1412 (1496)
.....+.+.++++..++.+.+.. | +.++|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~----------~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P----------VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C----------CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C----------cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 12345678888877765543322 2 33467774 5789999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHhc--CCcEEEEEccCc
Q 039402 1413 -VDTATDNLIQQTLRQHF--SDCTVLTIAHRI 1441 (1496)
Q Consensus 1413 -lD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl 1441 (1496)
||+.++..+++.+++.. +++|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999987753 588999999984
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-15 Score=156.24 Aligned_cols=82 Identities=23% Similarity=0.353 Sum_probs=69.2
Q ss_pred cCCCCCCChHHHHHHHHH------HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCccccCC
Q 039402 737 GERGINLSGGQKQRIQIA------RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPAAD 809 (1496)
Q Consensus 737 g~~g~~LSGGQkqRv~LA------RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d 809 (1496)
.....+||||||||++|| ||+..+|++++|||||++||+.....+.+ .+... .+|+|+|+|||+.+....||
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiiivsH~~~~~~~~d 130 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQVILVSHDEELKDAAD 130 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHH-HHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHH-HHHHHHccCCEEEEEEChHHHHHhCC
Confidence 456789999999999876 99999999999999999999999888865 45444 34899999999997666799
Q ss_pred EEEEE--eCCeE
Q 039402 810 LILVM--KDGKI 819 (1496)
Q Consensus 810 ~i~~l--~~G~i 819 (1496)
++++| ++|..
T Consensus 131 ~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 HVIRISLENGSS 142 (148)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEcCCCeE
Confidence 99999 45643
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-17 Score=177.61 Aligned_cols=145 Identities=15% Similarity=0.189 Sum_probs=105.3
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC-----------eeEEEccCCccCCCcHHHHhc---cCCCCCHHH
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-----------TKAYVAQSPWIQSGKIEDNIL---FGKEMNRER 711 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g-----------~~~yv~Q~~~i~~~ti~eNI~---~g~~~~~~~ 711 (1496)
|++++|+||||||||||+++|+|.++ ++| |.++| .++|++|+. +++ ++|+. |+.+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~----- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL---SGT-RGPLSRVGLEPP----- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET---TSC-EEEEEECCCCCC-----
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec---ccc-eehhhcccccCC-----
Confidence 78999999999999999999999999 899 87765 247888765 222 12221 1000
Q ss_pred HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH-HHHH---HHccCCCEEEEec--CCCCCCHHHHHHHHHHH
Q 039402 712 YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI-QIAR---ALYQDSDIYLFDD--PFSAVDAHTGSHLFQEV 785 (1496)
Q Consensus 712 ~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv-~LAR---Al~~~~~illLDe--p~saLD~~~~~~i~~~~ 785 (1496)
+......+|+.+.++|||||+++ +|++ |+..+||++|||| |+..+|+...+.+ +++
T Consensus 70 -----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l-~~~ 131 (189)
T 2i3b_A 70 -----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV-RQT 131 (189)
T ss_dssp -----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH-HHH
T ss_pred -----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH-HHH
Confidence 00112368899999999999998 5566 6899999999999 8988998765444 233
Q ss_pred HHHHhCCcEEEE--Ec--cCcCccccCCEEEEEeCCeEEEec
Q 039402 786 LLGLLSSKTVIY--VT--HQVEFLPAADLILVMKDGKITQAG 823 (1496)
Q Consensus 786 ~~~~~~~~tvil--vt--H~~~~l~~~d~i~~l~~G~i~~~G 823 (1496)
+ ...+|+|+ ++ |+.+ +..+|+|..+++|+|....
T Consensus 132 l---~~~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 132 L---STPGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp H---HCSSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred H---hCCCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 2 24556665 44 8876 5567888888999998753
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.7e-16 Score=200.72 Aligned_cols=146 Identities=16% Similarity=0.203 Sum_probs=113.1
Q ss_pred cceEEEEeEEeEeCC---CCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-CCccEEEECCeeCCCCChHH
Q 039402 1243 HGKIDLLDLQVRYAP---QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-PAAGQILIDGIDISLIGLHD 1318 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~---~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-p~~G~I~IDG~dI~~i~l~~ 1318 (1496)
.+.|++++. +++- +...|++|+||+ |+.++|+||||||||||++++.++.. ++.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 457888887 4432 335799999999 99999999999999999999999875 6777642 1 1
Q ss_pred HhcccEEEccccccccc-chhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1319 LRSRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1319 LR~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
.+.++++++| +|.. |+++|+.- .+|+|++|++.+|+++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il 650 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALIL 650 (765)
T ss_dssp SEEEECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHH
Confidence 2567888887 4543 66665421 2588999999999999
Q ss_pred --ccCCCEEEEEcC---CCCCCHHHH-HHHHHHHHHhcCCcEEEEEccCcchhccc
Q 039402 1398 --LKRSKILMLDEA---TASVDTATD-NLIQQTLRQHFSDCTVLTIAHRITSVIDS 1447 (1496)
Q Consensus 1398 --Lr~~~ILiLDEa---TsslD~~Td-~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~ 1447 (1496)
+.+|+++||||| |+++|..+. ..+.+.|++ .++|+|++||+.+....+
T Consensus 651 ~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 651 KEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 999999999999 999999875 468888877 589999999998765443
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-17 Score=209.82 Aligned_cols=190 Identities=12% Similarity=0.202 Sum_probs=122.4
Q ss_pred eEEEEeEEeEeCCCCCccceee----------eEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-CccEEEECCeeCCC
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGI----------SCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-AAGQILIDGIDISL 1313 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~i----------S~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-~~G~I~IDG~dI~~ 1313 (1496)
.++++|++..|.....++|+.+ +++++. +||||++|||||||+++|.|+..| ++|.|+++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5899999999975444455544 366665 999999999999999999999988 79999999999632
Q ss_pred C---ChHHHhcccEEEccccccccc-chhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1314 I---GLHDLRSRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1314 i---~l~~LR~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
. ....+|.+++++||++.+++. ||++|+.- +.+..+ .... .+| ++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~-----------~~~~~~------~~~~-----------~~s---~~ 135 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK-----------AQNAIA------GEGM-----------GIS---HE 135 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHH-----------HHHHHH------CSSS-----------CCC---SC
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHH-----------HHHHhc------CCcc-----------ccc---hH
Confidence 2 245688999999999988765 89888741 111110 0001 111 12
Q ss_pred HHHHHHHHccCCCEEEEEcC------CCCCCHHHHHHHHHHHHHhcC---CcEEEEEccCcchh--------c-----cc
Q 039402 1390 LVCLGRVLLKRSKILMLDEA------TASVDTATDNLIQQTLRQHFS---DCTVLTIAHRITSV--------I-----DS 1447 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEa------TsslD~~Td~~Iq~~I~~~f~---~~TVI~IAHRl~ti--------~-----~~ 1447 (1496)
.+.++.+...+|+++++||| |+++|+.+.+.+.+.++++.+ +.++++++|.++.. . ..
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~ 215 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGD 215 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCC
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCC
Confidence 33344444568999999999 999999999999999998643 45788899987632 1 24
Q ss_pred CEEEEEeCCeEeEecChhhHh
Q 039402 1448 DLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1448 DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
..|.|+.++.+++.|+++++.
T Consensus 216 rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 216 RTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SEEEEEECGGGSSSSSTTCCC
T ss_pred ceEEEecchhhcCcccHHHHH
Confidence 679999999999999876554
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-15 Score=153.46 Aligned_cols=87 Identities=21% Similarity=0.194 Sum_probs=73.9
Q ss_pred Cccccc-----ccCCCCCCchHHHHHHHH------HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEc
Q 039402 1371 KLDSKV-----TENGENWSMGQRQLVCLG------RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIA 1438 (1496)
Q Consensus 1371 gLdt~v-----~e~G~nLS~GQrQll~LA------RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IA 1438 (1496)
+++..+ .....+||||||||++|| ||++++|++|+|||||++||+++...+.+.|++.. .++|||+|+
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 555554 234578999999999876 99999999999999999999999999999999864 478999999
Q ss_pred cCcchhcccCEEEEE--eCCe
Q 039402 1439 HRITSVIDSDLVLLL--NHGL 1457 (1496)
Q Consensus 1439 HRl~ti~~~DrIlVL--~~G~ 1457 (1496)
|+......||+|++| ++|.
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGS 141 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTE
T ss_pred ChHHHHHhCCEEEEEEcCCCe
Confidence 999655569999999 4564
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-15 Score=195.91 Aligned_cols=167 Identities=14% Similarity=0.115 Sum_probs=118.0
Q ss_pred cceEEEEeEEeEeCC---CCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHH--------hcccCCCccEEEECCeeC
Q 039402 1243 HGKIDLLDLQVRYAP---QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTL--------FRIVEPAAGQILIDGIDI 1311 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~---~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L--------~rl~ep~~G~I~IDG~dI 1311 (1496)
.+.|++++..--+-. +.+.|++|++|++++|+.++|+|||||||||+++.+ .|.+-|.++..
T Consensus 629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~------- 701 (934)
T 3thx_A 629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE------- 701 (934)
T ss_dssp SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-------
T ss_pred CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-------
Confidence 356888876433322 234689999999999999999999999999999998 44443433211
Q ss_pred CCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 039402 1312 SLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1391 (1496)
Q Consensus 1312 ~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll 1391 (1496)
++++ +. .+.+.++.+.+ ..++|+|++++.
T Consensus 702 -----------~~~~------------d~--------------i~~~ig~~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 -----------VSIV------------DC--------------ILARVGAGDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp -----------EECC------------SE--------------EEEECC-----------------------CHHHHHHH
T ss_pred -----------chHH------------HH--------------HHHhcCchhhH--------------HHhHhhhHHHHH
Confidence 0000 00 01111111111 124688888888
Q ss_pred HHHHHH--ccCCCEEEEEcCCCCCCHHHHHHH-HHHHHHhc--CCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhh
Q 039402 1392 CLGRVL--LKRSKILMLDEATASVDTATDNLI-QQTLRQHF--SDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1392 ~LARAL--Lr~~~ILiLDEaTsslD~~Td~~I-q~~I~~~f--~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~ 1466 (1496)
.+|+++ +.+|+++||||||+++|+.....| +..++... .++|+|++||..+....||++..+.+|++...+++++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 999999999999999999877666 55555433 3899999999988888899999999999998877776
Q ss_pred H
Q 039402 1467 L 1467 (1496)
Q Consensus 1467 L 1467 (1496)
+
T Consensus 811 l 811 (934)
T 3thx_A 811 L 811 (934)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.9e-16 Score=199.23 Aligned_cols=144 Identities=16% Similarity=0.137 Sum_probs=103.2
Q ss_pred ccEEEEeeEEEecCC--CCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC-CCccEEEEc--CeeEEEccCC
Q 039402 616 TALDIVDGNFSWDIS--SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-KISGTLKLC--GTKAYVAQSP 690 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~--~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-~~~G~i~~~--g~~~yv~Q~~ 690 (1496)
..+.++++ .++.- +++++++|+||+ |++++|+||||||||||+++|.|... +..|.+.-. ..++|++|
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~-- 621 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG-- 621 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE--
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH--
Confidence 35777776 22220 346899999999 99999999999999999999999864 567764221 12445554
Q ss_pred ccCC-CcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCEEEEe
Q 039402 691 WIQS-GKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL--YQDSDIYLFD 767 (1496)
Q Consensus 691 ~i~~-~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl--~~~~~illLD 767 (1496)
++. .++.||+.+ .+|+|+++++.+|+++ ..+|+++|||
T Consensus 622 -i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLD 662 (765)
T 1ewq_A 622 -IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILKEATENSLVLLD 662 (765)
T ss_dssp -EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEE
T ss_pred -hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 222 245554432 3689999999999999 9999999999
Q ss_pred cC---CCCCCHHHHH-HHHHHHHHHHhCCcEEEEEccCcCccccC
Q 039402 768 DP---FSAVDAHTGS-HLFQEVLLGLLSSKTVIYVTHQVEFLPAA 808 (1496)
Q Consensus 768 ep---~saLD~~~~~-~i~~~~~~~~~~~~tvilvtH~~~~l~~~ 808 (1496)
|| |+++|+.... .+.+.+ .. .|.|+|++||+.+....+
T Consensus 663 EpgrGTs~lD~~~~~~~i~~~L-~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 663 EVGRGTSSLDGVAIATAVAEAL-HE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp STTTTSCHHHHHHHHHHHHHHH-HH--HTCEEEEECCCHHHHTCC
T ss_pred CCCCCCCCcCHHHHHHHHHHHH-Hh--CCCEEEEEeCCHHHHHhh
Confidence 99 9999987653 454433 32 589999999998775544
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.2e-15 Score=173.13 Aligned_cols=169 Identities=12% Similarity=0.103 Sum_probs=104.1
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc-EEEEcCeeEEEccCCccCCCcHHHHhcc---CCCC-
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG-TLKLCGTKAYVAQSPWIQSGKIEDNILF---GKEM- 707 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G-~i~~~g~~~yv~Q~~~i~~~ti~eNI~~---g~~~- 707 (1496)
.++|+++++.+++|++++|+||||||||||++.|+|.+.+.+| .|.+ +..+.. ...++..+.. +.+.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~------~~~e~~--~~~~~~r~~~~~~~~~~~ 93 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL------AMLEES--VEETAEDLIGLHNRVRLR 93 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEE------EESSSC--HHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEE------EeCcCC--HHHHHHHHHHHHcCCChh
Confidence 4689999999999999999999999999999999999998877 5533 222210 0011111110 1111
Q ss_pred ----------CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHH-HHHHHHHHHHccCCCEEEEecCCC---C-
Q 039402 708 ----------NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQ-KQRIQIARALYQDSDIYLFDDPFS---A- 772 (1496)
Q Consensus 708 ----------~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ-kqRv~LARAl~~~~~illLDep~s---a- 772 (1496)
+++.+++..+.. ++..+ -.+.+...++|.+| +||+. |+++..+|+++++|||++ +
T Consensus 94 ~~~~l~~~~~~~~~~~~~~~~~-----l~~~~----l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 94 QSDSLKREIIENGKFDQWFDEL-----FGNDT----FHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp GCHHHHHHHHHHTHHHHHHHHH-----HSSSC----EEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC------
T ss_pred hccccccCCCCHHHHHHHHHHH-----hccCC----EEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCC
Confidence 111111111110 11111 11233335789998 77777 999999999999999999 4
Q ss_pred --CCH-HHHHHHHHHHHHHHh-CCcEEEEEccCc--C--------------------ccc-cCCEEEEEeCCeE
Q 039402 773 --VDA-HTGSHLFQEVLLGLL-SSKTVIYVTHQV--E--------------------FLP-AADLILVMKDGKI 819 (1496)
Q Consensus 773 --LD~-~~~~~i~~~~~~~~~-~~~tvilvtH~~--~--------------------~l~-~~d~i~~l~~G~i 819 (1496)
+|. .....+.+.+..... .|.|||++||+. + .+. .||+|++|++|+.
T Consensus 164 ~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 164 GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 454 444555543322222 389999999995 4 554 4999999998874
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-17 Score=197.01 Aligned_cols=147 Identities=15% Similarity=0.086 Sum_probs=111.0
Q ss_pred EEEeEEeE---eCCCCCccc---------eeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC
Q 039402 1247 DLLDLQVR---YAPQMPLVL---------QGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI 1314 (1496)
Q Consensus 1247 ~f~nvs~~---Y~~~~~~vL---------k~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i 1314 (1496)
+|+||+|+ |++..+++| +++||++++|+.++|+|+||||||||+++|.|+++|++|.|.|+|. ..+
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence 89999999 864333466 9999999999999999999999999999999999999999999985 456
Q ss_pred ChHHHhcccEEEc-ccccc---cccchhhccCC-CCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1315 GLHDLRSRLSIIP-QDPVM---FEGTVRSNLDP-LEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1315 ~l~~LR~~i~iIp-Qdp~L---F~gTIR~NLdp-~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
.+..+|+++++++ |++.+ +..|+++||.. ....+|..+..+++.....+++..++.|.++.+++-+.+-..+..+
T Consensus 215 ~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~ 294 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFE 294 (361)
T ss_dssp CCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHH
T ss_pred CccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHH
Confidence 6666789999999 99886 78899999952 2223333333333333445667778899999898888887888899
Q ss_pred HHHHHH
Q 039402 1390 LVCLGR 1395 (1496)
Q Consensus 1390 ll~LAR 1395 (1496)
|+....
T Consensus 295 Rl~~l~ 300 (361)
T 2gza_A 295 RLALMV 300 (361)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-15 Score=168.69 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=85.8
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc-------EEEEcCee-------EEEccCCccCCCcHHHHhccCCCC
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG-------TLKLCGTK-------AYVAQSPWIQSGKIEDNILFGKEM 707 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G-------~i~~~g~~-------~yv~Q~~~i~~~ti~eNI~~g~~~ 707 (1496)
-+++|++++|+||||||||||+++|+|.+.+..| .+++++.. ++++|+..+...|+.||+.+....
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 100 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence 5899999999999999999999999996655332 44443321 122222222222333333332221
Q ss_pred CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHcc-------CCCEEEEecCCCCCCHHH---
Q 039402 708 NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQ-------DSDIYLFDDPFSAVDAHT--- 777 (1496)
Q Consensus 708 ~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~-------~~~illLDep~saLD~~~--- 777 (1496)
+ .+.|++++..++++.. +|++++||||++++|+..
T Consensus 101 ~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~ 145 (231)
T 4a74_A 101 N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR 145 (231)
T ss_dssp S-----------------------------------HHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCST
T ss_pred C-----------------------------------hHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCC
Confidence 1 1223333455555544 999999999999999842
Q ss_pred ----H-----HHHHHHHHHHHh-CCcEEEEEccCcC----cccc-CCEEEEEeCC
Q 039402 778 ----G-----SHLFQEVLLGLL-SSKTVIYVTHQVE----FLPA-ADLILVMKDG 817 (1496)
Q Consensus 778 ----~-----~~i~~~~~~~~~-~~~tvilvtH~~~----~l~~-~d~i~~l~~G 817 (1496)
. ..+++.+..... .|.|||++||..+ .+.. ||++++|++|
T Consensus 146 ~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 146 GALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred cchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 1 244444433332 3899999999554 3665 9999999875
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-16 Score=180.02 Aligned_cols=163 Identities=12% Similarity=0.136 Sum_probs=100.7
Q ss_pred CCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE---cCeeEEEccCCccCCCcHHHHhccCCC-
Q 039402 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL---CGTKAYVAQSPWIQSGKIEDNILFGKE- 706 (1496)
Q Consensus 631 ~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~---~g~~~yv~Q~~~i~~~ti~eNI~~g~~- 706 (1496)
+++++|+|+||++++|++++|+||||||||||+++|.|.+ |.+.+ ...++|++|++.....|+.+|+.+...
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~ 85 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQ 85 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCccccCHhHhhhhhccC
Confidence 3567999999999999999999999999999999999975 43322 245789999975445689988764321
Q ss_pred --------CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 039402 707 --------MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTG 778 (1496)
Q Consensus 707 --------~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~ 778 (1496)
.+.+++.+.++ .+..+.. .....||+||+||+++ +++..+|+++|||||....|...
T Consensus 86 ~~~~~~~~~~~~~~~~~L~---------~l~~~~~----~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l- 150 (245)
T 2jeo_A 86 YNFDHPDAFDNDLMHRTLK---------NIVEGKT----VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEI- 150 (245)
T ss_dssp CCTTSGGGBCHHHHHHHHH---------HHHTTCC----EEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHH-
T ss_pred CCCCCcccccHHHHHHHHH---------HHHCCCC----eecccccccccCccCc-eEEecCCCEEEEeCccccccHHH-
Confidence 12222222222 2222222 2346899999999988 68889999999999988887642
Q ss_pred HHHHHHHHHHHhCCcEEEEEccCcCcc-cc-CCEEEEEeCCeEEEecChHHHH
Q 039402 779 SHLFQEVLLGLLSSKTVIYVTHQVEFL-PA-ADLILVMKDGKITQAGKYNDLI 829 (1496)
Q Consensus 779 ~~i~~~~~~~~~~~~tvilvtH~~~~l-~~-~d~i~~l~~G~i~~~G~~~~l~ 829 (1496)
. + ..+.|++++||+...+ .. ++.+ ++|+ +.+++.
T Consensus 151 ---~-~-----~~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 151 ---R-D-----MFHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp ---H-T-----TCSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred ---H-H-----hcCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 1 1 1488999999974333 33 3333 5564 455554
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-15 Score=197.70 Aligned_cols=144 Identities=15% Similarity=0.106 Sum_probs=99.0
Q ss_pred CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC-CccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHH
Q 039402 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-ISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRE 710 (1496)
Q Consensus 632 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~ 710 (1496)
++++++|++|++++|++++|+|||||||||||+++.+.... ..| .++|++..- -.+.++|.-
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g--------~~vpa~~~~--i~~~d~i~~------- 721 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG--------SYVPAEEAT--IGIVDGIFT------- 721 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT--------CCBSSSEEE--EECCSEEEE-------
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC--------ccccchhhh--hhHHHHHHH-------
Confidence 46899999999999999999999999999999998653211 001 122221100 000011100
Q ss_pred HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 039402 711 RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL 790 (1496)
Q Consensus 711 ~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~ 790 (1496)
..++.+ .+..+..++|+|++|++.++|+ ..+|+++|||||++|+|+..+..+...+++.+.
T Consensus 722 -------~ig~~d-----------~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~ 782 (918)
T 3thx_B 722 -------RMGAAD-----------NIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFI 782 (918)
T ss_dssp -------EC---------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred -------hCChHH-----------HHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 001111 1223346899999999999999 899999999999999999999888766776552
Q ss_pred --CCcEEEEEccCcCccccCCEE
Q 039402 791 --SSKTVIYVTHQVEFLPAADLI 811 (1496)
Q Consensus 791 --~~~tvilvtH~~~~l~~~d~i 811 (1496)
.|.|+|++||+.+....+|+.
T Consensus 783 ~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 783 RDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp HTTCCEEEEECSCGGGGGHHHHT
T ss_pred HhcCCeEEEEeCcHHHHHHHhhc
Confidence 489999999999877656543
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9.3e-17 Score=177.39 Aligned_cols=140 Identities=12% Similarity=0.161 Sum_probs=105.6
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCC---CcHHHHhcc--CC--CCCHHHHHHH
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS---GKIEDNILF--GK--EMNRERYNAV 715 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~---~ti~eNI~~--g~--~~~~~~~~~v 715 (1496)
.++|++++|+||||||||||+++|.|.++| .++|++|++.++. .|+++|+.+ +. ..+.++..+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEH 73 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHH
Confidence 578999999999999999999999998875 5899999998763 367776544 32 2455566666
Q ss_pred HHHhchhhHHHhccCCCcccccCCCCCCChHH----HHHHHHHHHHccCCCEEEEecCCCC-------CCHHHHHHHHHH
Q 039402 716 LDACSLKKDLEILSFGDQTVIGERGINLSGGQ----KQRIQIARALYQDSDIYLFDDPFSA-------VDAHTGSHLFQE 784 (1496)
Q Consensus 716 ~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ----kqRv~LARAl~~~~~illLDep~sa-------LD~~~~~~i~~~ 784 (1496)
++..++.+. +...+.++|+|| +||+++||++..+|+++++|||+++ ||+.....+.+.
T Consensus 74 l~~~~~~~~-----------~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~ 142 (211)
T 3asz_A 74 AQALLRGLP-----------VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR 142 (211)
T ss_dssp HHHHHTTCC-----------EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred HHHHHcCCC-----------cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence 555433221 223466788885 5799999999999999999999999 999888877654
Q ss_pred HHHH-HhCCcEEEEEccCc
Q 039402 785 VLLG-LLSSKTVIYVTHQV 802 (1496)
Q Consensus 785 ~~~~-~~~~~tvilvtH~~ 802 (1496)
+.+. ..+|+|++.++|+.
T Consensus 143 l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 143 LKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4333 23689999999984
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.8e-16 Score=185.24 Aligned_cols=166 Identities=14% Similarity=0.174 Sum_probs=101.1
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
+.|+++|++++|+. ..+++|+||+| +|||+||||||||++.|+|...|..| .+|.++...+ ...+..+
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeE
Confidence 56999999999964 35999999998 99999999999999999999876665 2444432211 1124678
Q ss_pred EEEccccccc-ccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 039402 1324 SIIPQDPVMF-EGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402 (1496)
Q Consensus 1324 ~iIpQdp~LF-~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ 1402 (1496)
++++|++.++ ..||.+|+........++.|+.+. +.+.+ .++.+.+|+++||||++++|+
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~-----~~i~~--------------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVI-----DYIDS--------------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp ECC------CEEEEEEECC-----------CHHHH-----HHHHH--------------HHHHHTTTSCC-CCCCCCCC-
T ss_pred EEEEecCCcccceeeeechhhhhhccchhhHHHHH-----HHHHH--------------HHHHHHHHHHHHHHHhccCCC
Confidence 9999998776 569999986433323333333321 12221 234466789999999999999
Q ss_pred ---EEEEEcCC-CCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchh
Q 039402 1403 ---ILMLDEAT-ASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSV 1444 (1496)
Q Consensus 1403 ---ILiLDEaT-sslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti 1444 (1496)
+|++|||| +++|+..... .+.| ..++++|.|.|+.+++
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~~-lk~L---~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIEF-MKRL---HEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHHH-HHHH---TTTSEEEEEEESTTSS
T ss_pred eeEEEEEecCcccCCCHHHHHH-HHHH---hccCcEEEEEEcccCc
Confidence 99999999 6999876433 3333 3478999999988765
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.4e-14 Score=173.29 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=64.2
Q ss_pred CCCChHHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCccccCCEEEEEe
Q 039402 741 INLSGGQKQRIQIARALY----QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPAADLILVMK 815 (1496)
Q Consensus 741 ~~LSGGQkqRv~LARAl~----~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~ 815 (1496)
..||||||||++||+++. .+|+++|||||+++||+.....+.+ .+.... ++.++|++||+.+.+..||++++|.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHH-HHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 359999999999999998 6899999999999999999888865 444443 3789999999987777899999986
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-15 Score=173.04 Aligned_cols=163 Identities=14% Similarity=0.114 Sum_probs=108.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC----hHHH--hcccEEEccccccccc-chhhccCCC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG----LHDL--RSRLSIIPQDPVMFEG-TVRSNLDPL 1344 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~----l~~L--R~~i~iIpQdp~LF~g-TIR~NLdp~ 1344 (1496)
+|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+...+ +..+ |.++++++|++.+++. |+++|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~- 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA- 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH-
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH-
Confidence 68999999999999999999999999999999999999997764 2333 4579999999877654 67777631
Q ss_pred CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC--EEEEEcCCCCCCHHHHHHHH
Q 039402 1345 EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK--ILMLDEATASVDTATDNLIQ 1422 (1496)
Q Consensus 1345 ~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~--ILiLDEaTsslD~~Td~~Iq 1422 (1496)
+..+ +....+-..++.++. ....++..++||.++|||+..+|+ +|+|| |+++.| +.
T Consensus 180 ----------~~~~-~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~~ 237 (304)
T 1rj9_A 180 ----------MKAR-GYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------GL 237 (304)
T ss_dssp ----------HHHH-TCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------HH
T ss_pred ----------HHhC-CCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------HH
Confidence 1111 111111111221111 111245677999999999999999 66777 555543 22
Q ss_pred HHHHHhc--CCcEEEEEccCcchhccc----------CEEEEEeCCe
Q 039402 1423 QTLRQHF--SDCTVLTIAHRITSVIDS----------DLVLLLNHGL 1457 (1496)
Q Consensus 1423 ~~I~~~f--~~~TVI~IAHRl~ti~~~----------DrIlVL~~G~ 1457 (1496)
+.+++.. .+.|+|++||.-.+.... -.|..+..|+
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 2232221 278999999976553222 3566666665
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-15 Score=178.24 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=79.2
Q ss_pred EeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc-cCCCccEEEECCeeCCCCChHHHhcccEEEc
Q 039402 1249 LDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI-VEPAAGQILIDGIDISLIGLHDLRSRLSIIP 1327 (1496)
Q Consensus 1249 ~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl-~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIp 1327 (1496)
+||+.+|.. ..+++|++|+| +|||++|+|||||++.|++. ..|++| |.++|.++.. .. . ++.+++++
T Consensus 2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEEe
Confidence 478888864 35999999988 99999999999999999998 889999 9999988753 11 1 46789999
Q ss_pred cccccc-ccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEE
Q 039402 1328 QDPVMF-EGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILML 1406 (1496)
Q Consensus 1328 Qdp~LF-~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiL 1406 (1496)
|++.++ .-|+.+|........+++-++.+ .+.+.. ..+..+ .++|+|||||+.+|||+. +|++
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l-----~~~l~~---~~~~~~----~~~sgg~rqrv~~ara~~----ll~l 133 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAINCRDCFKTI-----ISYIDE---QFERYL----HDESGLNRRHIIDNRVHC----CFYF 133 (301)
T ss_dssp C---CCEEEEEEEEC-----------CTTH-----HHHHHH---HHHHHH----HHHTSSCCTTCCCCCCCE----EEEE
T ss_pred cCCCcccCcchhhhhhhhhhcCcHHHHHHH-----HHHHHH---HHHHHH----HHhCHHhhhhhhhhhhhh----eeee
Confidence 987654 44888887532211111111111 011111 111111 347999999999999985 9999
Q ss_pred EcCCCC-CCHHHHHHHHHHHHHhc--CCcEEEEEccCcch
Q 039402 1407 DEATAS-VDTATDNLIQQTLRQHF--SDCTVLTIAHRITS 1443 (1496)
Q Consensus 1407 DEaTss-lD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~t 1443 (1496)
||||++ +|+... +.+++.. .+.++|...|++.+
T Consensus 134 dePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 134 ISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp ECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred ecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 999985 999874 3333332 25678888898754
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.9e-14 Score=149.03 Aligned_cols=79 Identities=20% Similarity=0.308 Sum_probs=71.4
Q ss_pred CCCCCchHHHHHHHHHHHc----cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEE--
Q 039402 1380 GENWSMGQRQLVCLGRVLL----KRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLL-- 1453 (1496)
Q Consensus 1380 G~nLS~GQrQll~LARALL----r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL-- 1453 (1496)
..+||||||||++|||+++ ++|+++||||||++||+.+...+.+.|++..++.++|+|+||..+...||+|+.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999996 5679999999999999999999999999988889999999999999899999855
Q ss_pred eCCeE
Q 039402 1454 NHGLI 1458 (1496)
Q Consensus 1454 ~~G~I 1458 (1496)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 56753
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-14 Score=162.46 Aligned_cols=165 Identities=12% Similarity=0.081 Sum_probs=114.2
Q ss_pred ccceeeeE-EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhc---ccEEEcccccccccc
Q 039402 1261 LVLQGISC-TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS---RLSIIPQDPVMFEGT 1336 (1496)
Q Consensus 1261 ~vLk~iS~-~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~---~i~iIpQdp~LF~gT 1336 (1496)
+.|++++. .+++|+.++|+|++|||||||++.|.+...+.+|++.+.+.+.. .+.++. .+++.+|+...
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES---RDSIIRQAKQFNWDFEEYIE---- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC---HHHHHHHHHHTTCCCGGGBT----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC---HHHHHHHHHHhcchHHHHhh----
Confidence 47889988 89999999999999999999999999988888899888776543 344333 34444443221
Q ss_pred hhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC--EEEEEcCCCCC-
Q 039402 1337 VRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK--ILMLDEATASV- 1413 (1496)
Q Consensus 1337 IR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~--ILiLDEaTssl- 1413 (1496)
+++......... .. +. .+. ...|.+|.+..+.+.+...+|+ +||+||||+.+
T Consensus 83 --~~~~~~~~~~~~-----~~-----------~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~ 137 (235)
T 2w0m_A 83 --KKLIIIDALMKE-----KE-----------DQ----WSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFL 137 (235)
T ss_dssp --TTEEEEECCC--------------------CT----TBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSS
T ss_pred --CCEEEEeccccc-----cC-----------ce----eee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhc
Confidence 111100000000 00 00 011 1238899988888777777999 99999999888
Q ss_pred -CHHHHHHHHHHHHHhc--CCcEEEEEccCc--------chhcc-cCEEEEEeCCe
Q 039402 1414 -DTATDNLIQQTLRQHF--SDCTVLTIAHRI--------TSVID-SDLVLLLNHGL 1457 (1496)
Q Consensus 1414 -D~~Td~~Iq~~I~~~f--~~~TVI~IAHRl--------~ti~~-~DrIlVL~~G~ 1457 (1496)
|+.....+.+.|++.. .++|||+++|.. +.+.. ||+|++|++.+
T Consensus 138 ~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 138 DKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9887777777777653 489999999998 44655 99999998754
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-14 Score=159.20 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=104.4
Q ss_pred CCceeeeeE-EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHH
Q 039402 633 NPTLKDINL-KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRER 711 (1496)
Q Consensus 633 ~~~L~~i~l-~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~ 711 (1496)
.+.|+++.. .+++|++++|+||||||||||++.|++...+.+|.+. |+..+. ..+.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~------~~~~~~-----------------~~~~ 65 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCI------YVTTEE-----------------SRDS 65 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEE------EEESSS-----------------CHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE------EEEccc-----------------CHHH
Confidence 457888887 8999999999999999999999999998877666553 333221 1111
Q ss_pred HHHHHHHhchhhHHHhccCCCcccccC---------CCCCCChHHHHHHHHHHHHccCCC--EEEEecCCCCC--CHHHH
Q 039402 712 YNAVLDACSLKKDLEILSFGDQTVIGE---------RGINLSGGQKQRIQIARALYQDSD--IYLFDDPFSAV--DAHTG 778 (1496)
Q Consensus 712 ~~~v~~~~~l~~d~~~l~~g~~t~ig~---------~g~~LSGGQkqRv~LARAl~~~~~--illLDep~saL--D~~~~ 778 (1496)
..+.+...+. +.+.....+...+.. .....|.+|.++...+.+...+|+ ++++|||++.+ |+...
T Consensus 66 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~ 143 (235)
T 2w0m_A 66 IIRQAKQFNW--DFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMA 143 (235)
T ss_dssp HHHHHHHTTC--CCGGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGH
T ss_pred HHHHHHHhcc--hHHHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHH
Confidence 1111111111 011110000010100 012348999998888887778999 99999999888 99877
Q ss_pred HHHHHHHHHHH-hCCcEEEEEccCc--------Ccccc-CCEEEEEeCC
Q 039402 779 SHLFQEVLLGL-LSSKTVIYVTHQV--------EFLPA-ADLILVMKDG 817 (1496)
Q Consensus 779 ~~i~~~~~~~~-~~~~tvilvtH~~--------~~l~~-~d~i~~l~~G 817 (1496)
..+++.+.... ..|.|+|++||+. ..+.. ||+|++|++.
T Consensus 144 ~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 144 RKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 77776544333 2489999999998 44554 9999999864
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.48 E-value=6.9e-15 Score=174.90 Aligned_cols=156 Identities=17% Similarity=0.114 Sum_probs=99.0
Q ss_pred Cceeee-eEEEeCCcEEEEEecCCCcHHHHHHHHhcCC--CCCc----cE-EEEcCe-------eEEEccCCccCCCcHH
Q 039402 634 PTLKDI-NLKVFHGMRVAVCGTVGSGKSSLLSCILGEV--PKIS----GT-LKLCGT-------KAYVAQSPWIQSGKIE 698 (1496)
Q Consensus 634 ~~L~~i-~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~--~~~~----G~-i~~~g~-------~~yv~Q~~~i~~~ti~ 698 (1496)
+.|+++ ++.+++|++++|+||||||||||++.++|.. +|++ |+ |++++. +++++|.+.++..++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~ 197 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVL 197 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHG
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 456665 6899999999999999999999999999998 6666 56 666653 2344555444444555
Q ss_pred HHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHc-------cCCCEEEEecCCC
Q 039402 699 DNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY-------QDSDIYLFDDPFS 771 (1496)
Q Consensus 699 eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~-------~~~~illLDep~s 771 (1496)
|||.+...++ |++|+|++.++++++ .+|+++++|||++
T Consensus 198 ~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 198 KHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp GGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 5555443222 456777777777777 6899999999999
Q ss_pred CCCHHH------------HHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecC
Q 039402 772 AVDAHT------------GSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGK 824 (1496)
Q Consensus 772 aLD~~~------------~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~ 824 (1496)
++|+.. ..++...+.... ..+.|||+++|....... ++...+...|++.+.+.
T Consensus 243 ~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 243 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp THHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred hhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 999862 122222222222 248999999998764432 23445566666665544
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.4e-17 Score=193.97 Aligned_cols=167 Identities=17% Similarity=0.163 Sum_probs=132.6
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCC-ccEEEEcC---------eeEEEcc-----CCccCCCcHH
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI-SGTLKLCG---------TKAYVAQ-----SPWIQSGKIE 698 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~-~G~i~~~g---------~~~yv~Q-----~~~i~~~ti~ 698 (1496)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+ .++|++| ++..++.+++
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~ 203 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALR 203 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHH
Confidence 3566665 8999999999999999999999999999998 89996533 4578999 7888889999
Q ss_pred HHhccCCCC-------CHHHHHHHHHHhchh-----------------hHH------------HhccCCCcccccCCCCC
Q 039402 699 DNILFGKEM-------NRERYNAVLDACSLK-----------------KDL------------EILSFGDQTVIGERGIN 742 (1496)
Q Consensus 699 eNI~~g~~~-------~~~~~~~v~~~~~l~-----------------~d~------------~~l~~g~~t~ig~~g~~ 742 (1496)
+|+....+. |.+....+++++... .-+ ..++.+.++.+++++..
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~ 283 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLP 283 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEE
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEe
Confidence 999875444 777776767665321 111 12456778899999999
Q ss_pred CChHHHHHHHHHHHHccCCCE--EEEecCCCCCCHHH--H------HHHHHHHHHHHhCCcEEEEEccCcCc
Q 039402 743 LSGGQKQRIQIARALYQDSDI--YLFDDPFSAVDAHT--G------SHLFQEVLLGLLSSKTVIYVTHQVEF 804 (1496)
Q Consensus 743 LSGGQkqRv~LARAl~~~~~i--llLDep~saLD~~~--~------~~i~~~~~~~~~~~~tvilvtH~~~~ 804 (1496)
+||| ||+++||+++.+|+| +|+||+++++|... + ..+.+..+....+|+|.+.+.|++..
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 9999 899999999999999 99999999999652 1 23456666667789999999999863
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=9.7e-15 Score=162.13 Aligned_cols=140 Identities=14% Similarity=0.107 Sum_probs=106.0
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC--CccEEEECCeeCCCCChHHHhcccEEEccccccccc-ch----hhc
Q 039402 1268 CTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP--AAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TV----RSN 1340 (1496)
Q Consensus 1268 ~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep--~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~g-TI----R~N 1340 (1496)
-..++|+.++|+||||||||||+++|.|+++| ..|.|.+++.+... ..+..++|+||++.+|.. |+ .+|
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 45789999999999999999999999999986 78999998876542 246789999999988865 44 455
Q ss_pred cCCCCCC---cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHH
Q 039402 1341 LDPLEES---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT 1417 (1496)
Q Consensus 1341 Ldp~~~~---sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~T 1417 (1496)
+..++.+ +.++ ++.++.+++++||| ||+++
T Consensus 87 ~~~~~~~yg~~~~~------------------------------------------v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 87 AEVFGNYYGTSREA------------------------------------------IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EEETTEEEEEEHHH------------------------------------------HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHHHhccCCCCHHH------------------------------------------HHHHHhcCCeEEEE-----ECHHH
Confidence 5432110 1112 34445557999999 99999
Q ss_pred HHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhh
Q 039402 1418 DNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1418 d~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
...+.+.+. .++||++++|+++.+.. |+ +.+| .|+++++.+
T Consensus 120 ~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 120 AQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 999998876 57899999999998876 43 6777 678888764
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-14 Score=171.35 Aligned_cols=179 Identities=16% Similarity=0.167 Sum_probs=113.7
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcE--EEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEK--TGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~Gek--vgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
.++.++ +++|+. . + |+++||++++|+. +|||||||||||||+++|+|+. ++|.++........++.
T Consensus 16 ~l~~~~-~~~y~~-~-~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDS-L-P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred eEEEee-EEEECC-e-e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 456666 778854 3 3 9999999999999 9999999999999999999983 56666655545556778
Q ss_pred cEEEccccccc-ccchhhccCCCCCCcHHHHHHH----HHHcCCcHHHHh-------ccCCcccc-------cccCCCCC
Q 039402 1323 LSIIPQDPVMF-EGTVRSNLDPLEESTDEQIWEA----LDKCQLGDEVRK-------KEGKLDSK-------VTENGENW 1383 (1496)
Q Consensus 1323 i~iIpQdp~LF-~gTIR~NLdp~~~~sd~eI~~a----L~~~~L~~~i~~-------lp~gLdt~-------v~e~G~nL 1383 (1496)
+++++|++.++ .-|+.+|+......+.+..|+. ++. ++.+.+.. ++..-|+. |.+.+..+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l 162 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL 162 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---
T ss_pred EEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC
Confidence 99999999887 4599999976544443332222 111 11111111 12223333 23455567
Q ss_pred CchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcc
Q 039402 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAH 1439 (1496)
Q Consensus 1384 S~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAH 1439 (1496)
+..+ +.++|+|-.+.+|+++||+|..+.+.--..+.+.|++.+ .+.+|+.|+.
T Consensus 163 ~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 163 KSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 7666 789999999999999999999998876667777777633 4677888774
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-15 Score=163.06 Aligned_cols=98 Identities=20% Similarity=0.224 Sum_probs=77.1
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCCCC---ccEEEEcCee-----------------E----EEccCCccCCCcHHHHhc
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVPKI---SGTLKLCGTK-----------------A----YVAQSPWIQSGKIEDNIL 702 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~~~---~G~i~~~g~~-----------------~----yv~Q~~~i~~~ti~eNI~ 702 (1496)
++++|+|+||||||||+++|+|+++|. .|.|.++|.. + +++|+++++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 589999999999999999999999998 8999987632 3 566666554 111
Q ss_pred cCCCCCHHHHHHHHHHhchhhHHHh-ccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 039402 703 FGKEMNRERYNAVLDACSLKKDLEI-LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIY 764 (1496)
Q Consensus 703 ~g~~~~~~~~~~v~~~~~l~~d~~~-l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 764 (1496)
.+++. .+++.+.++. +| |.+|.++|+ |||||||||+||||++.+|+++
T Consensus 77 ----~~~~~------~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 ----VSEEE------GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----CCHHH------HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred ----CChhh------hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 11221 5678888888 89 999999995 9999999999999999999875
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-14 Score=171.29 Aligned_cols=146 Identities=23% Similarity=0.211 Sum_probs=98.2
Q ss_pred eeEEEecCCCCCCceeeeeE-------EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCC-ccEEEEcCeeEEEccCCccC
Q 039402 622 DGNFSWDISSHNPTLKDINL-------KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI-SGTLKLCGTKAYVAQSPWIQ 693 (1496)
Q Consensus 622 ~~~~~~~~~~~~~~L~~i~l-------~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~-~G~i~~~g~~~yv~Q~~~i~ 693 (1496)
.+++.+.+. ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...
T Consensus 93 ~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~------------- 158 (356)
T 3jvv_A 93 GAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI------------- 158 (356)
T ss_dssp EEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE-------------
T ss_pred EEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc-------------
Confidence 445555432 3567777766 77889999999999999999999999999987 4555321
Q ss_pred CCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCC
Q 039402 694 SGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAV 773 (1496)
Q Consensus 694 ~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saL 773 (1496)
.|++.+..+.. .+.. . +..++... ++-.+ +|||||.++||++++|||+
T Consensus 159 ----ed~~e~~~~~~---------~~~v----~------q~~~~~~~--~~~~~----~La~aL~~~PdvillDEp~--- 206 (356)
T 3jvv_A 159 ----EDPIEFVHESK---------KCLV----N------QREVHRDT--LGFSE----ALRSALREDPDIILVGEMR--- 206 (356)
T ss_dssp ----ESSCCSCCCCS---------SSEE----E------EEEBTTTB--SCHHH----HHHHHTTSCCSEEEESCCC---
T ss_pred ----cCcHHhhhhcc---------ccce----e------eeeecccc--CCHHH----HHHHHhhhCcCEEecCCCC---
Confidence 11111111000 0000 0 11122221 22222 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCC
Q 039402 774 DAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDG 817 (1496)
Q Consensus 774 D~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 817 (1496)
|+++.+.+ ++....|+|+++++|+.+.+..+||++.|..|
T Consensus 207 d~e~~~~~----~~~~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 207 DLETIRLA----LTAAETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SHHHHHHH----HHHHHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred CHHHHHHH----HHHHhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 77764433 33345699999999999988779999988654
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.9e-15 Score=170.58 Aligned_cols=150 Identities=12% Similarity=0.164 Sum_probs=80.6
Q ss_pred eeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcC-CCCCccEEEEcC----------eeEEEccCC
Q 039402 622 DGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE-VPKISGTLKLCG----------TKAYVAQSP 690 (1496)
Q Consensus 622 ~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~-~~~~~G~i~~~g----------~~~yv~Q~~ 690 (1496)
|+++.|. .+.++++++|+| +|+|+||+|||||++.|.|. ..|++| +.++| .++|++|.+
T Consensus 3 ~l~~~~~---~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 3 NLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEER 72 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC--
T ss_pred CCcceEC---CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCC
Confidence 4555663 467999999988 99999999999999999998 888888 54433 357888876
Q ss_pred ccC-CCcHHHHhccCCCCCH-HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEec
Q 039402 691 WIQ-SGKIEDNILFGKEMNR-ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDD 768 (1496)
Q Consensus 691 ~i~-~~ti~eNI~~g~~~~~-~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDe 768 (1496)
... ..|+.|+..++...+. ++++.+.+. +.+.. .....++|||||||+.+|||+. ++++||
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~-----------~~~~~~~sgg~rqrv~~ara~~----ll~lde 135 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQF-----------ERYLHDESGLNRRHIIDNRVHC----CFYFIS 135 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHH--HHHHH-----------HHHHHHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHH-----------HHHHHHhCHHhhhhhhhhhhhh----eeeeec
Confidence 553 4589999888754321 222222222 11111 1334679999999999999985 999999
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHh--CCcEEEEEccCcC
Q 039402 769 PFSA-VDAHTGSHLFQEVLLGLL--SSKTVIYVTHQVE 803 (1496)
Q Consensus 769 p~sa-LD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~ 803 (1496)
||++ ||+... . +++.+. .+.++|+.+||+.
T Consensus 136 Pt~~~Ld~~~~-~----~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 136 PFGHGLKPLDV-A----FMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSSSCCHHHH-H----HHHHHTTTSCEEEEECCGGGS
T ss_pred CcccCCCHHHH-H----HHHHHHhcCCEEEEEEeCCCC
Confidence 9985 999763 2 233222 2578888899874
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.41 E-value=7.9e-15 Score=161.25 Aligned_cols=161 Identities=16% Similarity=0.183 Sum_probs=91.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCC-----CCCccEEEEcCeeE-----EEc
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV-----PKISGTLKLCGTKA-----YVA 687 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~-----~~~~G~i~~~g~~~-----yv~ 687 (1496)
++++|++|.|+ .+++++ |++++|..++|+|++|||||||++.|+|.. .|+.|++...+..- .+.
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 67889999995 267888 889999999999999999999999999998 78888775432111 111
Q ss_pred cCCccCCC--------cHHHHh-------------cc----CCCCCHHHHHHHHHHhchhhHHHhccCCCc-ccccCCCC
Q 039402 688 QSPWIQSG--------KIEDNI-------------LF----GKEMNRERYNAVLDACSLKKDLEILSFGDQ-TVIGERGI 741 (1496)
Q Consensus 688 Q~~~i~~~--------ti~eNI-------------~~----g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~-t~ig~~g~ 741 (1496)
..|-.... ..+..+ .+ ..+.... ..++.+. +.. .+.. ..++.+..
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~------~~~--~~~~~~~v~nK~D 148 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEW------AVD--SNIAVLVLLTKAD 148 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHH------HHH--TTCCEEEEEECGG
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchh-HHHHHHH------HHH--cCCCeEEEEeccc
Confidence 11111000 001000 00 0011111 1111111 111 1222 23477778
Q ss_pred CCChHHHHH-HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCc
Q 039402 742 NLSGGQKQR-IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793 (1496)
Q Consensus 742 ~LSGGQkqR-v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~ 793 (1496)
.+|+||||| +..||+++.+|+++++|||+||+|......+++.+.+...++.
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 149 KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC---
T ss_pred CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhcc
Confidence 899999999 8999999999999999999999999999999876554443343
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.4e-14 Score=182.67 Aligned_cols=150 Identities=11% Similarity=0.040 Sum_probs=100.0
Q ss_pred CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC-CccEEEEcC---eeEEEccCCccCC-CcHHHHhccCCC
Q 039402 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-ISGTLKLCG---TKAYVAQSPWIQS-GKIEDNILFGKE 706 (1496)
Q Consensus 632 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-~~G~i~~~g---~~~yv~Q~~~i~~-~ti~eNI~~g~~ 706 (1496)
++.+++|++|+ ++|++++|+|||||||||||++|.|...+ ..|.. +.. .+++++| ++. .++.||+..
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vpa~~~~i~~~~~---i~~~~~~~d~l~~--- 665 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPAQKVEIGPIDR---IFTRVGAADDLAS--- 665 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSSSEEEECCCCE---EEEEEC----------
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cchhcccceeHHH---HHhhCCHHHHHHh---
Confidence 46799999999 99999999999999999999999986421 12210 000 1122222 111 122222211
Q ss_pred CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 039402 707 MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786 (1496)
Q Consensus 707 ~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~ 786 (1496)
...++|+|+++ ++.+.....+|+++|||||++|+|+..+..+...++
T Consensus 666 --------------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll 712 (800)
T 1wb9_A 666 --------------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACA 712 (800)
T ss_dssp ------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHH
T ss_pred --------------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 12346777765 444445689999999999999999988777655556
Q ss_pred HHHh--CCcEEEEEccCcCccccCCEEEEEeCCeEEEe
Q 039402 787 LGLL--SSKTVIYVTHQVEFLPAADLILVMKDGKITQA 822 (1496)
Q Consensus 787 ~~~~--~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 822 (1496)
+.+. .|.|+|++||+.+....||++..+++|++...
T Consensus 713 ~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 713 ENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred HHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 5543 38999999999988777888777778877654
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-15 Score=177.14 Aligned_cols=128 Identities=12% Similarity=0.022 Sum_probs=90.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC-C---C
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE-E---S 1347 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~---~ 1347 (1496)
++..|||+|+||||||||++.|.+++.+. | . . ++.+.+|+||+++|++++++|+.... + .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 46799999999999999999999999864 2 0 1 45566669999999999999973100 0 0
Q ss_pred cHHHHHHHHHHcCCcHHHHhccCCcccc------cccCCCCCCchHHHHHHHH--HHHccCCCEEEEEcCCCCCCHHH
Q 039402 1348 TDEQIWEALDKCQLGDEVRKKEGKLDSK------VTENGENWSMGQRQLVCLG--RVLLKRSKILMLDEATASVDTAT 1417 (1496)
Q Consensus 1348 sd~eI~~aL~~~~L~~~i~~lp~gLdt~------v~e~G~nLS~GQrQll~LA--RALLr~~~ILiLDEaTsslD~~T 1417 (1496)
+....-++.+...+.+++..++.|+||. +...+.++||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000001111223446677788887753 4456789999999999997 666 899999999999999865
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-13 Score=143.01 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=68.7
Q ss_pred CCCCCCChHHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEE
Q 039402 738 ERGINLSGGQKQRIQIARALY----QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILV 813 (1496)
Q Consensus 738 ~~g~~LSGGQkqRv~LARAl~----~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~ 813 (1496)
.+..+||||||||++|||++. ++|+++||||||++||+.....+.+ .+....++.++|+|||+...+..||+++.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~-~l~~~~~~~~~ivith~~~~~~~ad~i~~ 138 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVAD-LIKESSKESQFIVITLRDVMMANADKIIG 138 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHH-HHHHhccCCEEEEEEecHHHHHhCCEEEE
Confidence 445789999999999999995 5689999999999999999888865 55666667899999999888888999985
Q ss_pred E--eCCeE
Q 039402 814 M--KDGKI 819 (1496)
Q Consensus 814 l--~~G~i 819 (1496)
+ ++|..
T Consensus 139 v~~~~g~s 146 (173)
T 3kta_B 139 VSMRDGVS 146 (173)
T ss_dssp EEEETTEE
T ss_pred EEecCCEE
Confidence 5 56754
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-13 Score=179.82 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=104.0
Q ss_pred ceEEEEeEEeEe-----CCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH
Q 039402 1244 GKIDLLDLQVRY-----APQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD 1318 (1496)
Q Consensus 1244 g~I~f~nvs~~Y-----~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~ 1318 (1496)
+.|++++..--. ..+...|++|+||++++|+.++|+|||||||||+++.+.++.-.
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~------------------- 699 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM------------------- 699 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-------------------
Confidence 467777643221 11245799999999999999999999999999999998654211
Q ss_pred HhcccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc
Q 039402 1319 LRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL 1398 (1496)
Q Consensus 1319 LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL 1398 (1496)
.+.-+++|++..-+ ++.+++ +.+.++.+.+ ..+-+.+|+|++|+..++|+ +
T Consensus 700 -aq~g~~vpa~~~~i--~~~d~i--------------~~~ig~~d~l-----------~~~~stfs~em~~~~~il~~-a 750 (918)
T 3thx_B 700 -AQIGSYVPAEEATI--GIVDGI--------------FTRMGAADNI-----------YKGRSTFMEELTDTAEIIRK-A 750 (918)
T ss_dssp -HHHTCCBSSSEEEE--ECCSEE--------------EEEC---------------------CCHHHHHHHHHHHHHH-C
T ss_pred -hhcCccccchhhhh--hHHHHH--------------HHhCChHHHH-----------HHhHHHhhHHHHHHHHHHHh-c
Confidence 11122344433111 000111 1111221111 12235689999999999999 8
Q ss_pred cCCCEEEEEcCCCCCCHHHHHHHH-HHHHHhc--CCcEEEEEccCcchhcccCE
Q 039402 1399 KRSKILMLDEATASVDTATDNLIQ-QTLRQHF--SDCTVLTIAHRITSVIDSDL 1449 (1496)
Q Consensus 1399 r~~~ILiLDEaTsslD~~Td~~Iq-~~I~~~f--~~~TVI~IAHRl~ti~~~Dr 1449 (1496)
.+|++|||||||+++|+.....|. ..++... .++|+|++||.++...-+|+
T Consensus 751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 999999999999999998877765 5555432 48999999999877654543
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-16 Score=173.74 Aligned_cols=131 Identities=17% Similarity=0.227 Sum_probs=97.9
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC----
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE---- 1345 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---- 1345 (1496)
.++|+++||+|+||||||||+++|.|+++|. | ...++|+||.+.+..+.++|+..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999876 4 3578888888888888777764211
Q ss_pred --CCcHHHHHHHHHHcCCcHHHHhcc--CCcccccccCCCCCCchHHHHHHHH-HHHccCCCEEEEEcCC----------
Q 039402 1346 --ESTDEQIWEALDKCQLGDEVRKKE--GKLDSKVTENGENWSMGQRQLVCLG-RVLLKRSKILMLDEAT---------- 1410 (1496)
Q Consensus 1346 --~~sd~eI~~aL~~~~L~~~i~~lp--~gLdt~v~e~G~nLS~GQrQll~LA-RALLr~~~ILiLDEaT---------- 1410 (1496)
.++.+.+.+.+ ..++ +.+++++.+.|.+.|+||+|++++| |+++.++.++++|||.
T Consensus 80 ~~~~~~~~~~~~l---------~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~ 150 (208)
T 3c8u_A 80 PETFDFEGFQRLC---------HALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDV 150 (208)
T ss_dssp GGGBCHHHHHHHH---------HHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSE
T ss_pred CchhhHHHHHHHH---------HHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCE
Confidence 12233333333 2332 3478889999999999999999998 9999999988899974
Q ss_pred -CCCCHHHHHHHHHHHHHh
Q 039402 1411 -ASVDTATDNLIQQTLRQH 1428 (1496)
Q Consensus 1411 -sslD~~Td~~Iq~~I~~~ 1428 (1496)
..+|...+..+++.+++.
T Consensus 151 ~i~vd~~~~~~~~R~~~R~ 169 (208)
T 3c8u_A 151 SIRLEVPMADLEARLVQRW 169 (208)
T ss_dssp EEEECCCHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHH
Confidence 335655665566655553
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-13 Score=159.98 Aligned_cols=139 Identities=18% Similarity=0.115 Sum_probs=90.7
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------------eEEEccCCccCC-CcHHHHhcc
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------------KAYVAQSPWIQS-GKIEDNILF 703 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------------~~yv~Q~~~i~~-~ti~eNI~~ 703 (1496)
.+|++++|+||||||||||++.|+|.++|++|+|.+.|. ++|++|++..+. .+++||+.+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999999999999999998763 468888776543 367777653
Q ss_pred CCCCCHHHHHHHHHHhchhhHHHhcc-CCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 039402 704 GKEMNRERYNAVLDACSLKKDLEILS-FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLF 782 (1496)
Q Consensus 704 g~~~~~~~~~~v~~~~~l~~d~~~l~-~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~ 782 (1496)
+. . + + .|...+. .|.. ......++..+|||+++|||+..+|+.++| +||+.++..+.
T Consensus 180 ~~------~----~--~--~d~~llDt~G~~---~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~ 237 (304)
T 1rj9_A 180 MK------A----R--G--YDLLFVDTAGRL---HTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGL 237 (304)
T ss_dssp HH------H----H--T--CSEEEECCCCCC---TTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHH
T ss_pred HH------h----C--C--CCEEEecCCCCC---CchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHH
Confidence 21 0 0 0 1111110 0100 011123567779999999999999994444 34444444444
Q ss_pred HHHHHHH-hCCcEEEEEccCcCc
Q 039402 783 QEVLLGL-LSSKTVIYVTHQVEF 804 (1496)
Q Consensus 783 ~~~~~~~-~~~~tvilvtH~~~~ 804 (1496)
+.+..-. ..+.|+|++||+-+.
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHcCCcEEEEECCccc
Confidence 3322212 237899999998554
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-13 Score=153.16 Aligned_cols=149 Identities=17% Similarity=0.088 Sum_probs=97.7
Q ss_pred ccceeeeE-EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhh
Q 039402 1261 LVLQGISC-TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRS 1339 (1496)
Q Consensus 1261 ~vLk~iS~-~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~ 1339 (1496)
+.|+++.. .+++|+.++|+|++|||||||++.+.+ ++..+.+++++.+ ..+.+.+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~------------------ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQ------------------ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHH------------------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHH------------------
Confidence 35677665 799999999999999999999999999 4444556665432 122222222
Q ss_pred ccCCCCCCcHHHHHHHHHHcCCc--HHHHhccCCcccccccCCCCCCch--HHHHHHHHHHHccC-CCEEEEEcCCCCCC
Q 039402 1340 NLDPLEESTDEQIWEALDKCQLG--DEVRKKEGKLDSKVTENGENWSMG--QRQLVCLGRVLLKR-SKILMLDEATASVD 1414 (1496)
Q Consensus 1340 NLdp~~~~sd~eI~~aL~~~~L~--~~i~~lp~gLdt~v~e~G~nLS~G--QrQll~LARALLr~-~~ILiLDEaTsslD 1414 (1496)
.++..++. +....+ .+. ..|.+ |+|+++.+|+++++ |+++|+||||+.+|
T Consensus 65 ---------------~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 65 ---------------MAETRGLNPEEALSRF------ILF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp ---------------HHHTTTCCHHHHHHHE------EEE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred ---------------HHHhcCCChHHHhhcE------EEE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 11111111 001111 011 12333 47899999999986 99999999999999
Q ss_pred HHHH-----H---HHHHHHHHhcC--CcEEEEEccCcc-------------hh-cccCEEEEEeCC
Q 039402 1415 TATD-----N---LIQQTLRQHFS--DCTVLTIAHRIT-------------SV-IDSDLVLLLNHG 1456 (1496)
Q Consensus 1415 ~~Td-----~---~Iq~~I~~~f~--~~TVI~IAHRl~-------------ti-~~~DrIlVL~~G 1456 (1496)
...+ + .+.+.|++..+ ++|||+++|... .+ ..||+|++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 7543 2 23334555433 799999999876 23 359999999865
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=7.2e-15 Score=172.82 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=108.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc--------CCCccEEEECCeeCCCCC---------------hHHHhcccEEE---c
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIV--------EPAAGQILIDGIDISLIG---------------LHDLRSRLSII---P 1327 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~--------ep~~G~I~IDG~dI~~i~---------------l~~LR~~i~iI---p 1327 (1496)
+.++|+|++|||||||++.|.|+. .|+.|+|.|||.++...+ ..++++.++.+ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999998764 45788889988 7
Q ss_pred cccc-ccccchhhccCCCCCCcHHHHHHHH-------HHcCCcHHHHh--ccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1328 QDPV-MFEGTVRSNLDPLEESTDEQIWEAL-------DKCQLGDEVRK--KEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1328 Qdp~-LF~gTIR~NLdp~~~~sd~eI~~aL-------~~~~L~~~i~~--lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
|++. .|+.++.||..... ...+.+.+ ++..+...+.. ..+..+. -.++|+||+||.+.+|++
T Consensus 85 q~~~~~~~~~v~E~~~l~~---p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~-----~~~ls~g~~Q~~~ad~il 156 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMAD---PGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQ-----MNQFTIAQSQVGYADRIL 156 (318)
T ss_dssp HHTSCCCSEEEEEEETTCC---HHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHH-----HHHCHHHHHHHHTCSEEE
T ss_pred hcCCCCCCEEEEeCCCCCC---HHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHH-----HhhchHHHHHHHhCCEEE
Confidence 9876 47889999987432 12222222 11111111100 0000011 115899999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCc
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRI 1441 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl 1441 (1496)
+.+|+++ ||| +.+.+.|++..++.||++++|+.
T Consensus 157 l~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 157 LTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp EECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred EECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 9999987 888 67788888877889999999964
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-13 Score=155.14 Aligned_cols=146 Identities=14% Similarity=0.191 Sum_probs=92.5
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE------cCeeEEEccCCccCCCcHHHHh-ccCCCCCHHHHHH
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL------CGTKAYVAQSPWIQSGKIEDNI-LFGKEMNRERYNA 714 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~------~g~~~yv~Q~~~i~~~ti~eNI-~~g~~~~~~~~~~ 714 (1496)
.+++|++++|+||||||||||++.+++.+. .|.+.. .+.+.|++.+... ..+.+++ .++...+..+...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~~ 101 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQA 101 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhhh
Confidence 378999999999999999999999998654 343322 2456676654322 1222222 1233334333333
Q ss_pred HHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC--CCCHHHH---HHHHHHHHHHH
Q 039402 715 VLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS--AVDAHTG---SHLFQEVLLGL 789 (1496)
Q Consensus 715 v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s--aLD~~~~---~~i~~~~~~~~ 789 (1496)
+++.+.+. ...+.....||+||+|++ |++..+|+++++|||++ ++|.... ..+.+.+....
T Consensus 102 ~~~~l~l~-----------~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~ 167 (279)
T 1nlf_A 102 VADGLLIQ-----------PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIA 167 (279)
T ss_dssp HHHHEEEC-----------CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHH
T ss_pred ccCceEEe-----------ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHH
Confidence 33333221 112456778999998875 68888999999999999 9998543 45544333222
Q ss_pred -hCCcEEEEEccCcCcc
Q 039402 790 -LSSKTVIYVTHQVEFL 805 (1496)
Q Consensus 790 -~~~~tvilvtH~~~~l 805 (1496)
..|.|||+++|+....
T Consensus 168 ~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 168 ADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHCCEEEEEEEC----
T ss_pred HHcCCEEEEEecCCCcc
Confidence 2489999999998654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.7e-14 Score=169.84 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=96.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc--EEEEc-------CeeEEEc
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG--TLKLC-------GTKAYVA 687 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G--~i~~~-------g~~~yv~ 687 (1496)
.+.++++++.|. .+++++|++|+| +|+|+||||||||+++|+|...+..| .+.++ ..++|++
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 11 YVGFANLPNQVY---RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp ----CCCCCCTT---TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-
T ss_pred cEEEEecceeEC---CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEE
Confidence 578888888884 467999999998 99999999999999999999875443 11111 1368888
Q ss_pred cCCccC-CCcHHHHhccCCCCCHH-HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC---
Q 039402 688 QSPWIQ-SGKIEDNILFGKEMNRE-RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD--- 762 (1496)
Q Consensus 688 Q~~~i~-~~ti~eNI~~g~~~~~~-~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~--- 762 (1496)
|++.++ ..||.||+.++...+.. .+..+.+ .++ ..++++++||++||||++.+|+
T Consensus 82 q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~------~i~--------------~~~~~~l~qr~~IaRal~~d~~~~v 141 (418)
T 2qag_C 82 KEGGVQLLLTIVDTPGFGDAVDNSNCWQPVID------YID--------------SKFEDYLNAESRVNRRQMPDNRVQC 141 (418)
T ss_dssp -----CEEEEEEECC-----------CHHHHH------HHH--------------HHHHHHTTTSCC-CCCCCCCC-CCE
T ss_pred ecCCcccceeeeechhhhhhccchhhHHHHHH------HHH--------------HHHHHHHHHHHHHHHHhccCCCeeE
Confidence 987765 56999999998653321 1122211 111 1345677889999999999999
Q ss_pred EEEEecCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcc
Q 039402 763 IYLFDDPF-SAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFL 805 (1496)
Q Consensus 763 illLDep~-saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l 805 (1496)
++++|||| ++||+... .+ +..+..+.++|+|.|..+.+
T Consensus 142 lL~ldePt~~~L~~~d~-~~----lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 142 CLYFIAPSGHGLKPLDI-EF----MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp EEEECCC-CCSCCHHHH-HH----HHHHTTTSEEEEEEESTTSS
T ss_pred EEEEecCcccCCCHHHH-HH----HHHHhccCcEEEEEEcccCc
Confidence 99999999 69998753 22 33334578899999987654
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-15 Score=179.02 Aligned_cols=71 Identities=24% Similarity=0.119 Sum_probs=56.2
Q ss_pred ceeeeeEEEeC--CcEEEEEecCCCcHHHHHHHHhcCCCCCc----cEEEEc----Ce-----------eEEEccCCccC
Q 039402 635 TLKDINLKVFH--GMRVAVCGTVGSGKSSLLSCILGEVPKIS----GTLKLC----GT-----------KAYVAQSPWIQ 693 (1496)
Q Consensus 635 ~L~~i~l~i~~--G~~~~ivG~~GsGKSTLl~~ilG~~~~~~----G~i~~~----g~-----------~~yv~Q~~~i~ 693 (1496)
..+.|+++|++ |++++|+||||||||||+++|+|.++|++ |++.++ |. ++|++|++.++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDY 236 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 887763 21 35556665555
Q ss_pred CCcHHHHhccCC
Q 039402 694 SGKIEDNILFGK 705 (1496)
Q Consensus 694 ~~ti~eNI~~g~ 705 (1496)
.+|++|||.++.
T Consensus 237 ~~t~~~nl~~~~ 248 (365)
T 1lw7_A 237 AVRHSHKIAFID 248 (365)
T ss_dssp HHHHCSSEEEES
T ss_pred HHhccCCEEEEe
Confidence 666777776653
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.35 E-value=6.7e-15 Score=170.26 Aligned_cols=128 Identities=15% Similarity=0.120 Sum_probs=92.0
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCC----CHHHHHHHHHHhc
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEM----NRERYNAVLDACS 720 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~----~~~~~~~v~~~~~ 720 (1496)
++.+++|+|++|||||||.+.|.+.+++.... ...+.+|+|++++++.++++|+.++.+. .........+...
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~---~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~ 106 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGG---EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKL 106 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGG---GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCC---CceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHH
Confidence 56799999999999999999999998763101 1234566999999999999999765210 0000001111223
Q ss_pred hhhHHHhccCCCc------ccccCCCCCCChHHHHHHHHH--HHHccCCCEEEEecCCCCCCHHH
Q 039402 721 LKKDLEILSFGDQ------TVIGERGINLSGGQKQRIQIA--RALYQDSDIYLFDDPFSAVDAHT 777 (1496)
Q Consensus 721 l~~d~~~l~~g~~------t~ig~~g~~LSGGQkqRv~LA--RAl~~~~~illLDep~saLD~~~ 777 (1496)
+.+.++.++.|.+ ..+...+.++||||+||+++| |++ +|+|+|+|||++++|+..
T Consensus 107 l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 107 LQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 4566777777744 346677889999999999998 666 999999999999999864
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.35 E-value=7e-13 Score=149.14 Aligned_cols=146 Identities=19% Similarity=0.196 Sum_probs=91.5
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhc--ccCC-----CccEEEECCeeCCC-CChHHHhcccEEEcccccccccchhhc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFR--IVEP-----AAGQILIDGIDISL-IGLHDLRSRLSIIPQDPVMFEGTVRSN 1340 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~r--l~ep-----~~G~I~IDG~dI~~-i~l~~LR~~i~iIpQdp~LF~gTIR~N 1340 (1496)
-+++|+.++|+|++|||||||++.|.+ +.+| .+|.+++++.+... -.+..+++++++.||+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5555 67899999876321 1233455667776654 3455
Q ss_pred cCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc--cCCCEEEEEcCCCCCCHH--
Q 039402 1341 LDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL--KRSKILMLDEATASVDTA-- 1416 (1496)
Q Consensus 1341 Ldp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL--r~~~ILiLDEaTsslD~~-- 1416 (1496)
+......+.++..+. +.-++.++ .+|+++++||+|+.+|..
T Consensus 93 ~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 93 VAYARAFNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp EEEEECCSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred eEEEecCCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 432222232232222 22222222 579999999999999986
Q ss_pred -----HHHH--HHHH---HHHhc--CCcEEEEEccCcchhc--------------------ccCEEEEEeCC
Q 039402 1417 -----TDNL--IQQT---LRQHF--SDCTVLTIAHRITSVI--------------------DSDLVLLLNHG 1456 (1496)
Q Consensus 1417 -----Td~~--Iq~~---I~~~f--~~~TVI~IAHRl~ti~--------------------~~DrIlVL~~G 1456 (1496)
+++. +.+. +++.. .++|||+++|-..... .||.|++|++|
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3222 3333 33322 3899999999554322 49999999976
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.34 E-value=7.5e-13 Score=152.79 Aligned_cols=151 Identities=11% Similarity=0.130 Sum_probs=97.3
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCC-CCCC
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDP-LEES 1347 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp-~~~~ 1347 (1496)
.+++|+.++|+|++|||||||++.+.+.+. .|++ +.|.+... +.++.|++.+... ..++.++.- ....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~ 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHL 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhc
Confidence 378999999999999999999999998664 5665 33544321 2356666655432 112222210 0112
Q ss_pred cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCC--CCCHHHH---HHHH
Q 039402 1348 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATA--SVDTATD---NLIQ 1422 (1496)
Q Consensus 1348 sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTs--slD~~Td---~~Iq 1422 (1496)
.+++..++++...+.+ ..+.....+|+||+|++ |+++++|+++|+||||+ ++|.... ..+.
T Consensus 95 ~~~~~~~~~~~l~l~~-----------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 95 SAEERQAVADGLLIQP-----------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp CHHHHHHHHHHEEECC-----------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred ChhhhhhccCceEEee-----------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 3334444455544322 22334567899998865 78899999999999999 8997544 5666
Q ss_pred HHHHHhc--CCcEEEEEccCcchh
Q 039402 1423 QTLRQHF--SDCTVLTIAHRITSV 1444 (1496)
Q Consensus 1423 ~~I~~~f--~~~TVI~IAHRl~ti 1444 (1496)
+.|++.. .++|||+|+|.....
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHcCCEEEEEecCCCcc
Confidence 6666653 389999999987654
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-13 Score=175.90 Aligned_cols=165 Identities=12% Similarity=0.079 Sum_probs=107.0
Q ss_pred ceEEEEeEEeEeCC-----CCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-CccEEEECCeeCCCCChH
Q 039402 1244 GKIDLLDLQVRYAP-----QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-AAGQILIDGIDISLIGLH 1317 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~-----~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-~~G~I~IDG~dI~~i~l~ 1317 (1496)
+.|++++.. ++- +...|++|+||+ ++|+.++|+|||||||||+++++.++.-+ ..| ..+..
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 457776642 221 234689999999 99999999999999999999999997532 222 11110
Q ss_pred HHhcccEEEccccccccc-chhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1318 DLRSRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
-+.++++++| +|.. ++.+|+. .++ +.+|+|++|+.. +..
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~---------------------------~~~--------stf~~e~~~~~~-il~ 682 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLA---------------------------SGR--------STFMVEMTETAN-ILH 682 (800)
T ss_dssp -SEEEECCCCE---EEEEEC----------------------------------------------CHHHHHHHHH-HHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHH---------------------------hhh--------hhhhHHHHHHHH-HHH
Confidence 1234555555 3322 3333321 011 245777765443 344
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHH-HHHHHHhc--CCcEEEEEccCcchhcccCEEEEEeCCeEeEe
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLI-QQTLRQHF--SDCTVLTIAHRITSVIDSDLVLLLNHGLIEEF 1461 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~I-q~~I~~~f--~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~ 1461 (1496)
.+.+|+++||||||+++|+.....+ .+.++... .++|+|++||..+....||++..+.+|++...
T Consensus 683 ~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 683 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 5889999999999988888654443 55665543 38999999999988777888777777776543
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-14 Score=184.68 Aligned_cols=175 Identities=19% Similarity=0.269 Sum_probs=102.9
Q ss_pred cEEEEeeEEEecCCCCCCceeee----------eEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC-CccEEEEcCe---
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDI----------NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-ISGTLKLCGT--- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i----------~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-~~G~i~~~g~--- 682 (1496)
.++++++++.|+.. .+++|+.+ +++++. ++|+||||||||||+++|+|...| ++|.|+++|.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 46788888888521 13344433 366665 999999999999999999999988 7999988763
Q ss_pred -------------eEEEccCCccCC-CcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 -------------KAYVAQSPWIQS-GKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 -------------~~yv~Q~~~i~~-~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++|++|++.++. .||+|||.+.. ...+. .+..+| +
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~-----------~~~~~-----------------~~~~~s---~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ-----------NAIAG-----------------EGMGIS---H 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH-----------HHHHC-----------------SSSCCC---S
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH-----------HHhcC-----------------Cccccc---h
Confidence 478888887765 48888875421 00000 001111 2
Q ss_pred HHHHHHHHHccCCCEEEEecC------CCCCCHHHHHHHHHHHHHHHh-C--CcEEEEEccCcCccc-------------
Q 039402 749 QRIQIARALYQDSDIYLFDDP------FSAVDAHTGSHLFQEVLLGLL-S--SKTVIYVTHQVEFLP------------- 806 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep------~saLD~~~~~~i~~~~~~~~~-~--~~tvilvtH~~~~l~------------- 806 (1496)
+++.++.+...+|+++++||| |++||+.....+. +++..+. + +.+++++||+++...
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~-~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIK-TLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHH-HHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHH-HHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 334444445568999999999 9999999888775 4555543 2 567888999987431
Q ss_pred cCCEEEEEeCCeEEEecChHH
Q 039402 807 AADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 807 ~~d~i~~l~~G~i~~~G~~~~ 827 (1496)
....|+|+.++.++..|+.++
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTC
T ss_pred CCceEEEecchhhcCcccHHH
Confidence 135688888887777666443
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.33 E-value=6.6e-14 Score=151.77 Aligned_cols=138 Identities=14% Similarity=0.064 Sum_probs=89.1
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEEST 1348 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~s 1348 (1496)
.+++|+.++|+|++|||||||++.|.+. |..|.|.+||.++.... .-++.++++||++. ...|+++|+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~---- 75 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADV---- 75 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHH----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHH----
Confidence 5789999999999999999999999998 78899999997763221 11345788888765 455778776321
Q ss_pred HHHHHHHHHHcCCcHHHHhcc--CCcccc--cccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHH
Q 039402 1349 DEQIWEALDKCQLGDEVRKKE--GKLDSK--VTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424 (1496)
Q Consensus 1349 d~eI~~aL~~~~L~~~i~~lp--~gLdt~--v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~ 1424 (1496)
.. ...+.+-...+.... .+++.. .......+|+||+|++++||++.++|+++ +|++..+.+.+.
T Consensus 76 -~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 76 -AG---RYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp -HH---HHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred -HH---HHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 00 011111100000000 011100 02233569999999999999999999876 577666656555
Q ss_pred HHH
Q 039402 1425 LRQ 1427 (1496)
Q Consensus 1425 I~~ 1427 (1496)
++.
T Consensus 144 ~~~ 146 (191)
T 1zp6_A 144 FAD 146 (191)
T ss_dssp TTC
T ss_pred Hhc
Confidence 543
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=7.2e-15 Score=173.94 Aligned_cols=175 Identities=15% Similarity=0.172 Sum_probs=119.1
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC----hHHHhc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG----LHDLRS 1321 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~----l~~LR~ 1321 (1496)
|+++|++++|.. ..+|+++||++++|+.+||+|++|||||||+++|.|++.|++|+|.|.|.|+.+.. ....|.
T Consensus 30 ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 30 AESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 455667777743 35899999999999999999999999999999999999999999999999986543 234688
Q ss_pred ccEEEcccccccc----------cch---hhcc-------------C-CCCCCcHHHHHHHHHH-------------cCC
Q 039402 1322 RLSIIPQDPVMFE----------GTV---RSNL-------------D-PLEESTDEQIWEALDK-------------CQL 1361 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~----------gTI---R~NL-------------d-p~~~~sd~eI~~aL~~-------------~~L 1361 (1496)
++++++|+|.+|. ||- ++.+ | |.-..++..+.+.++- -.+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 9999999998885 221 2111 0 1000111111100000 001
Q ss_pred cHHHHhccC-----CcccccccCCCCCCchHHHHHHHHHHHcc------CCCEEEEEcCCCCCCHHHHHHHHHHHHHhc
Q 039402 1362 GDEVRKKEG-----KLDSKVTENGENWSMGQRQLVCLGRVLLK------RSKILMLDEATASVDTATDNLIQQTLRQHF 1429 (1496)
Q Consensus 1362 ~~~i~~lp~-----gLdt~v~e~G~nLS~GQrQll~LARALLr------~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f 1429 (1496)
.+.+.+.+. +.|. .....+|+|++|++..|++++. +|+|+. ||++|.+.-..+.+.|.+..
T Consensus 188 ~~~i~~~~~ivvlNK~Dl---~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 188 KKGIFELADMIAVNKADD---GDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CTTHHHHCSEEEEECCST---TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHhccccEEEEEchhc---cCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 111112221 1221 0113468999999999999998 688876 99999999888888887753
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.9e-13 Score=160.83 Aligned_cols=172 Identities=17% Similarity=0.254 Sum_probs=107.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcE--EEEEecCCCcHHHHHHHHhcCCCCCccEE--------EEcCeeEEEc
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMR--VAVCGTVGSGKSSLLSCILGEVPKISGTL--------KLCGTKAYVA 687 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~--~~ivG~~GsGKSTLl~~ilG~~~~~~G~i--------~~~g~~~yv~ 687 (1496)
+++++ ++.|+ +.+ |+++||++++|++ ++|+||||||||||+++|+|..- .|.. .. ..++|++
T Consensus 17 l~~~~-~~~y~---~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~-~~i~~v~ 88 (427)
T 2qag_B 17 VPLAG-HVGFD---SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQL-QSNTYDL 88 (427)
T ss_dssp CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEE-EEEEEEE
T ss_pred EEEee-EEEEC---Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceE-eeEEEEe
Confidence 44444 56664 345 9999999999999 99999999999999999999841 1211 11 1579999
Q ss_pred cCCccC-CCcHHHHhccCCCCCHH-HHHHHHHHh--chhhHHHhc-------cCCCcc-------cccCCCCCCChHHHH
Q 039402 688 QSPWIQ-SGKIEDNILFGKEMNRE-RYNAVLDAC--SLKKDLEIL-------SFGDQT-------VIGERGINLSGGQKQ 749 (1496)
Q Consensus 688 Q~~~i~-~~ti~eNI~~g~~~~~~-~~~~v~~~~--~l~~d~~~l-------~~g~~t-------~ig~~g~~LSGGQkq 749 (1496)
|++.++ +.|+.||+.||...+.. .+..+.+.. .....+... +...++ .|-..+..|+-.+
T Consensus 89 Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-- 166 (427)
T 2qag_B 89 QESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-- 166 (427)
T ss_dssp EC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--
T ss_pred ecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--
Confidence 998876 56999999999876532 111111110 011111111 111111 1223345677666
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcc
Q 039402 750 RIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTH 800 (1496)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH 800 (1496)
+.++++|..+++|+++|+|+..|.+.....+++.+...+. .|.+++.++.
T Consensus 167 -ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 167 -LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp -HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred -HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 8999999999999999999999998877777665544343 4777877775
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.1e-12 Score=160.43 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=68.6
Q ss_pred CCCCC-ChHHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEe
Q 039402 739 RGINL-SGGQKQRIQIARALYQDS--DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMK 815 (1496)
Q Consensus 739 ~g~~L-SGGQkqRv~LARAl~~~~--~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 815 (1496)
...+| ||||||||+||||+..+| +++||||||++||+.+...+.+. +..+.+++|||+|||+++.+..||++++|+
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~-l~~~~~~~~vi~itH~~~~~~~~d~~~~~~ 471 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQ-LSRLADTRQVLVVTHLAQIAARAHHHYKVE 471 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHH-HHHHHHHSEEEEECCCHHHHHHSSEEEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHH-HHHHhCCCEEEEEecCHHHHHhCCEEEEEe
Confidence 34677 999999999999999999 99999999999999999888764 444444899999999999888899999996
Q ss_pred CC
Q 039402 816 DG 817 (1496)
Q Consensus 816 ~G 817 (1496)
+|
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 65
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-13 Score=150.21 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=88.2
Q ss_pred EEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC--CccEEEEcCe---------eEEEccCCccCCC-cH----HHHhccC
Q 039402 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK--ISGTLKLCGT---------KAYVAQSPWIQSG-KI----EDNILFG 704 (1496)
Q Consensus 641 l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~--~~G~i~~~g~---------~~yv~Q~~~i~~~-ti----~eNI~~g 704 (1496)
-..++|++++|+||||||||||+++|+|.++| ..|.|.+.++ ++|++|++..|.. ++ .||+.+.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 35789999999999999999999999999986 7888877552 4567766554432 22 2333321
Q ss_pred CCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 039402 705 KEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQE 784 (1496)
Q Consensus 705 ~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~ 784 (1496)
. ++.|-.+++ ++.++..++++||| ||+.....+.+.
T Consensus 91 ~------------------------------------~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~ 126 (219)
T 1s96_A 91 G------------------------------------NYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQK 126 (219)
T ss_dssp T------------------------------------EEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHH
T ss_pred h------------------------------------ccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHH
Confidence 1 111111222 23444557999999 999998887653
Q ss_pred HHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHH
Q 039402 785 VLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI 829 (1496)
Q Consensus 785 ~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~ 829 (1496)
+. +++||+++||+++.+.. |+ +.+| .++.+++.
T Consensus 127 -l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 127 -MP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp -CT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHH
T ss_pred -cc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHH
Confidence 22 68999999999988755 32 6666 56776664
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-14 Score=156.97 Aligned_cols=148 Identities=18% Similarity=0.260 Sum_probs=95.9
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCC-------------CCccEEEEcCee-E---------EEccCCccCCCcHHHH
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVP-------------KISGTLKLCGTK-A---------YVAQSPWIQSGKIEDN 700 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~-------------~~~G~i~~~g~~-~---------yv~Q~~~i~~~ti~eN 700 (1496)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.. . .++|+++++++++.+|
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n 79 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDIAAGDFIEHAEFSGN 79 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHHHTCEEEEEEETTE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHHHcCCCEeeeeecCc
Confidence 5899999999999999999999999876 67776 35531 1 1256778888899999
Q ss_pred hccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHH-HHccCCCEEEEecCCCCCCHHHHH
Q 039402 701 ILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR-ALYQDSDIYLFDDPFSAVDAHTGS 779 (1496)
Q Consensus 701 I~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR-Al~~~~~illLDep~saLD~~~~~ 779 (1496)
+ +|. ..+..+++++..... .++..+.|..+.... ++ .|| +++.+|++.+|||+++++|.++.+
T Consensus 80 ~-~g~--~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~~e~ 143 (198)
T 1lvg_A 80 L-YGT--SKEAVRAVQAMNRIC-VLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTETEE 143 (198)
T ss_dssp E-EEE--EHHHHHHHHHTTCEE-EEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCSCHH
T ss_pred c-CCC--CHHHHHHHHHcCCcE-EEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCCCHH
Confidence 8 664 345555665531110 001112233332211 12 567 788999999999999999999988
Q ss_pred HHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeC
Q 039402 780 HLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKD 816 (1496)
Q Consensus 780 ~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 816 (1496)
.|.+.+ ....++ +.++| +. ..+|+|+++++
T Consensus 144 ~i~~~l-~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 144 SLAKRL-AAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHHHHH-HHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred HHHHHH-HHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 876543 322222 23456 22 66999988864
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-11 Score=134.78 Aligned_cols=149 Identities=19% Similarity=0.106 Sum_probs=94.0
Q ss_pred CceeeeeE-EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHH
Q 039402 634 PTLKDINL-KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERY 712 (1496)
Q Consensus 634 ~~L~~i~l-~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~ 712 (1496)
+.|+++.. .+++|++++|+||+|||||||++.+++ ++ . +.+.|+..+..+ +.++.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~------~~v~~i~~~~~~---------------~~~~~ 62 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-G------KKVAYVDTEGGF---------------SPERL 62 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-C------SEEEEEESSCCC---------------CHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-C------CcEEEEECCCCC---------------CHHHH
Confidence 45666554 689999999999999999999999999 22 2 234555544311 22222
Q ss_pred HHHHHHhchhh--HHHhccCCCcccccCCCCCCChH--HHHHHHHHHHHccC-CCEEEEecCCCCCCHHHH--------H
Q 039402 713 NAVLDACSLKK--DLEILSFGDQTVIGERGINLSGG--QKQRIQIARALYQD-SDIYLFDDPFSAVDAHTG--------S 779 (1496)
Q Consensus 713 ~~v~~~~~l~~--d~~~l~~g~~t~ig~~g~~LSGG--QkqRv~LARAl~~~-~~illLDep~saLD~~~~--------~ 779 (1496)
.+..+..++.. ..+.+. ..+++++ |+|+++.+|++..+ |+++++|||++.+|+... .
T Consensus 63 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~ 132 (220)
T 2cvh_A 63 VQMAETRGLNPEEALSRFI----------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELS 132 (220)
T ss_dssp HHHHHTTTCCHHHHHHHEE----------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHH
T ss_pred HHHHHhcCCChHHHhhcEE----------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHH
Confidence 22222222110 011110 1233444 46789999999986 999999999999997432 2
Q ss_pred HHHHHHHHHHh--CCcEEEEEccCcCc-------------cc-cCCEEEEEeCC
Q 039402 780 HLFQEVLLGLL--SSKTVIYVTHQVEF-------------LP-AADLILVMKDG 817 (1496)
Q Consensus 780 ~i~~~~~~~~~--~~~tvilvtH~~~~-------------l~-~~d~i~~l~~G 817 (1496)
++.+. +..+. .+.|+|+++|.... +. .||.+++|++.
T Consensus 133 ~~~~~-L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 133 RQLQV-LLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHH-HHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHH-HHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 23222 23322 38899999998752 33 49999999754
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.1e-12 Score=153.62 Aligned_cols=149 Identities=14% Similarity=0.174 Sum_probs=99.8
Q ss_pred eeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC----hHH--HhcccEEEccccccc-ccc
Q 039402 1264 QGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG----LHD--LRSRLSIIPQDPVMF-EGT 1336 (1496)
Q Consensus 1264 k~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~----l~~--LR~~i~iIpQdp~LF-~gT 1336 (1496)
+++||++++|+.++|||+||||||||++.|.|++.|++|+|.++|.|+.... +.. .|.++++++|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5788999999999999999999999999999999999999999998886542 223 477899999998755 458
Q ss_pred hhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCC------CCCchHHHHHHHHHHHccC-C-CEEEEEc
Q 039402 1337 VRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE------NWSMGQRQLVCLGRVLLKR-S-KILMLDE 1408 (1496)
Q Consensus 1337 IR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~------nLS~GQrQll~LARALLr~-~-~ILiLDE 1408 (1496)
+++|+... + . .+.|..+-+... ++-.--+|++.++|++... | .+|+..+
T Consensus 364 V~e~l~~a-----------~-~-----------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 364 IFDAIQAA-----------K-A-----------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHH-----------H-H-----------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHH-----------H-h-----------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 88887421 1 1 112221111111 1111224788888877543 5 3554445
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEEcc
Q 039402 1409 ATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439 (1496)
Q Consensus 1409 aTsslD~~Td~~Iq~~I~~~f~~~TVI~IAH 1439 (1496)
||.+.|... . .+.+++. .+.|.+++||
T Consensus 421 attGq~al~--~-ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 421 ASTGQNAVS--Q-AKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp GGGTHHHHH--H-HHHHHHH-TCCSEEEEEC
T ss_pred CcccHHHHH--H-HHHHHhh-cCCCEEEEEc
Confidence 887754431 1 1222322 3679999999
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-14 Score=176.61 Aligned_cols=173 Identities=14% Similarity=0.121 Sum_probs=119.6
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEccccccccc--ch
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEG--TV 1337 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~g--TI 1337 (1496)
+.+++++++.+++|+.++|+|+|||||||++++|.|+++|++|.|+|+|.+--.++. +..+++++|++. ..+ |.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCH
Confidence 357899999999999999999999999999999999999999999999876333221 445677777765 332 54
Q ss_pred hhcc------CC----CCCCcHHHHHHHHHHcCC-------------cHHHHhc---cCCcccccc-------cCCCCCC
Q 039402 1338 RSNL------DP----LEESTDEQIWEALDKCQL-------------GDEVRKK---EGKLDSKVT-------ENGENWS 1384 (1496)
Q Consensus 1338 R~NL------dp----~~~~sd~eI~~aL~~~~L-------------~~~i~~l---p~gLdt~v~-------e~G~nLS 1384 (1496)
++++ +| .++.++.|.+.+++.+.- .+.+..+ +.++...+. .....+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 4443 23 256777777777666531 1222222 222222111 1234579
Q ss_pred chHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEE--EccCcchhcc-cC
Q 039402 1385 MGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLT--IAHRITSVID-SD 1448 (1496)
Q Consensus 1385 ~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~--IAHRl~ti~~-~D 1448 (1496)
+|||||.|+|. + | |+++|+++...+.+.|.+.- .++|++. ++|+++.+.. |+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 99999988751 1 7 99999988776666665543 3689885 8999998864 54
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.20 E-value=7.8e-12 Score=149.04 Aligned_cols=140 Identities=16% Similarity=0.224 Sum_probs=82.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-ccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHH
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR-IVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIW 1353 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r-l~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~ 1353 (1496)
.+.|+|++|+||||++++|.+ ++.|..|+|.++|.++..... -+..+++++|++++.-.. -+ .+....+++.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~ 110 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITP----SD-MGNNDRIVIQ 110 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECC----C-----CCHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecH----hh-cCCcchHHHH
Confidence 499999999999999999999 899999999999988764332 267899999998753110 01 0111222344
Q ss_pred HHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcE
Q 039402 1354 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCT 1433 (1496)
Q Consensus 1354 ~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~T 1433 (1496)
+.++.+... .+++..+ .+|+ +..+++|+|+|||++ +|.++.+.+.+++++.-++++
T Consensus 111 ~~i~~~~~~-------~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 111 ELLKEVAQM-------EQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp HHHHHHTTT-------TC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEE
T ss_pred HHHHHHHHh-------ccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCE
Confidence 444332110 1122111 4565 778999999999999 999999999999998777899
Q ss_pred EEEEccCcchhc
Q 039402 1434 VLTIAHRITSVI 1445 (1496)
Q Consensus 1434 VI~IAHRl~ti~ 1445 (1496)
+|+++|+++.+.
T Consensus 167 ~Il~t~~~~~l~ 178 (354)
T 1sxj_E 167 LIMVCDSMSPII 178 (354)
T ss_dssp EEEEESCSCSSC
T ss_pred EEEEeCCHHHHH
Confidence 999999986553
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.5e-14 Score=155.01 Aligned_cols=166 Identities=17% Similarity=0.021 Sum_probs=105.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEccccccc-ccchhhccCCCCCCcHHH
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMF-EGTVRSNLDPLEESTDEQ 1351 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF-~gTIR~NLdp~~~~sd~e 1351 (1496)
|+.++|+|++||||||+++.|.+ |.+|.+.+||.++... ...+++||++..+ ..|+++|+.. .
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~-------~ 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITD-------L 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHH-------H
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHH-------H
Confidence 68899999999999999999987 6789999998665321 2467778876433 3366666531 0
Q ss_pred HHHHHHHcCCcHHHHhccCCccccccc----CCCCC--CchHHHHHHHHH------HHccCCCEEEEEcCCCCCCHHHHH
Q 039402 1352 IWEALDKCQLGDEVRKKEGKLDSKVTE----NGENW--SMGQRQLVCLGR------VLLKRSKILMLDEATASVDTATDN 1419 (1496)
Q Consensus 1352 I~~aL~~~~L~~~i~~lp~gLdt~v~e----~G~nL--S~GQrQll~LAR------ALLr~~~ILiLDEaTsslD~~Td~ 1419 (1496)
....++ .+. +.+ +|...+. .-..+ |+|++|++.++. +++++++...+|| ++|+....
T Consensus 66 ~~~~~~-~~~-~~i------ld~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~ 134 (189)
T 2bdt_A 66 TVNFLL-AQN-DVV------LDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLE 134 (189)
T ss_dssp HHHHHH-TTC-EEE------EESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGH
T ss_pred HHHHHh-cCC-cEE------EeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHH
Confidence 111111 110 000 1110000 00123 778888877777 8888888878884 78987766
Q ss_pred HHHHHHHHhc-CCcEEEEEccC-cchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1420 LIQQTLRQHF-SDCTVLTIAHR-ITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1420 ~Iq~~I~~~f-~~~TVI~IAHR-l~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
. .+.+++.. .+.|+|..+|. ++++.. ||+|+ ++|+++..|+|+-|-
T Consensus 135 ~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 135 L-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp H-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred H-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 6 66666653 35799999999 999877 99999 999999999988763
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-13 Score=152.88 Aligned_cols=113 Identities=18% Similarity=0.186 Sum_probs=84.1
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhcc----CC--CCCHHHHHHHH
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILF----GK--EMNRERYNAVL 716 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~----g~--~~~~~~~~~v~ 716 (1496)
.++|++++|+||||||||||+++|.|.++|. | ...++++|+...++.+..+|+.. +. .++.+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-----~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 89 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-----LPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQ--- 89 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-----CCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHH---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-----CceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHH---
Confidence 4789999999999999999999999999875 4 24678888888777777777631 11 12333222
Q ss_pred HHhchhhHHHhccCC--CcccccCCCCCCChHHHHHHHHH-HHHccCCCEEEEecCC
Q 039402 717 DACSLKKDLEILSFG--DQTVIGERGINLSGGQKQRIQIA-RALYQDSDIYLFDDPF 770 (1496)
Q Consensus 717 ~~~~l~~d~~~l~~g--~~t~ig~~g~~LSGGQkqRv~LA-RAl~~~~~illLDep~ 770 (1496)
+.+..++.| ..+.+.+++..+||||+||+++| |+++.++.++++|||.
T Consensus 90 ------~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 90 ------RLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp ------HHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred ------HHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 233333333 34567888999999999999998 8888888888888874
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.2e-13 Score=142.01 Aligned_cols=86 Identities=10% Similarity=0.065 Sum_probs=71.3
Q ss_pred EeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcc
Q 039402 1249 LDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQ 1328 (1496)
Q Consensus 1249 ~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQ 1328 (1496)
+|++++|.. ..+++++||++++||.+||+|++|||||||+++|.|++ |++|+|.++|.++... ...+ + ++||
T Consensus 11 ~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~-~--~~~q 82 (158)
T 1htw_A 11 EFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA-G--KMIY 82 (158)
T ss_dssp HHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET-T--EEEE
T ss_pred HHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC-C--ccee
Confidence 455666643 35899999999999999999999999999999999999 9999999999888531 1122 2 7999
Q ss_pred cccccccchhhccC
Q 039402 1329 DPVMFEGTVRSNLD 1342 (1496)
Q Consensus 1329 dp~LF~gTIR~NLd 1342 (1496)
++.+|.-|+++|+.
T Consensus 83 ~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 83 HFDLYRLADPEELE 96 (158)
T ss_dssp EEECTTCSCTTHHH
T ss_pred ccccccCCcHHHHH
Confidence 99888668888874
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.17 E-value=6.4e-13 Score=143.97 Aligned_cols=123 Identities=15% Similarity=0.032 Sum_probs=78.1
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEEEccCCccCCCcHHHHhccCCCCCHH
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYVAQSPWIQSGKIEDNILFGKEMNRE 710 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~yv~Q~~~i~~~ti~eNI~~g~~~~~~ 710 (1496)
.+++|++++|+||||||||||+++|+|. +..|.|.++|. ++|++|++. .+.|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~l~~~~----- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ-QNRMIMQIAADVA----- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH-HHHHHHHHHHHHH-----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh-hhHHHHHHHHHHH-----
Confidence 4789999999999999999999999998 67899998763 244555433 2346667664421
Q ss_pred HHHHHHHHhchhhHHHhcc--CCCcc--cccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 039402 711 RYNAVLDACSLKKDLEILS--FGDQT--VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783 (1496)
Q Consensus 711 ~~~~v~~~~~l~~d~~~l~--~g~~t--~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~ 783 (1496)
......+-..-++.+. .+... ..+.....+|+||+||+++||++.++|+++ +|+...+.+++
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HHHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HHHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 0000000000000000 00000 013345689999999999999999999876 57776665554
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=7.4e-11 Score=141.72 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=67.5
Q ss_pred CCCCchHHHHH------HHHHHHccC-CCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEE
Q 039402 1381 ENWSMGQRQLV------CLGRVLLKR-SKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLL 1453 (1496)
Q Consensus 1381 ~nLS~GQrQll------~LARALLr~-~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL 1453 (1496)
.++||||+||+ ++|||+..+ |++|||||||++||+.+...+.+.|++..+++|||+|||+.+....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 47999999987 678999999 99999999999999999999999999865567999999998865669999999
Q ss_pred eC
Q 039402 1454 NH 1455 (1496)
Q Consensus 1454 ~~ 1455 (1496)
++
T Consensus 359 ~k 360 (371)
T 3auy_A 359 KK 360 (371)
T ss_dssp EE
T ss_pred Ee
Confidence 83
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-11 Score=141.90 Aligned_cols=166 Identities=15% Similarity=0.110 Sum_probs=108.5
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH----HHhcccE--EEccccccccc-chhhcc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH----DLRSRLS--IIPQDPVMFEG-TVRSNL 1341 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~----~LR~~i~--iIpQdp~LF~g-TIR~NL 1341 (1496)
..++|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+...+.. .++++++ +++|++.++.. |+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999887643 3455544 89999877754 788887
Q ss_pred CCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHH
Q 039402 1342 DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI 1421 (1496)
Q Consensus 1342 dp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~I 1421 (1496)
.. +.+. +. +.+ -+|+. |-. ..-..=-+++-.++|++..++++++||.+|. .|.. +.+
T Consensus 205 ~~-----------~~~~-~~-d~v-----liDta-G~~-~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~--~~~ 261 (328)
T 3e70_C 205 QH-----------AKAR-GI-DVV-----LIDTA-GRS-ETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIV--EQA 261 (328)
T ss_dssp HH-----------HHHH-TC-SEE-----EEEEC-CSC-CTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHH--HHH
T ss_pred HH-----------HHhc-cc-hhh-----HHhhc-cch-hHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHH--HHH
Confidence 42 1110 10 000 02221 000 0011123456679999999999999996665 2221 111
Q ss_pred HHHHHHhcCCcEEEEEccCcchh----------cccCEEEEEeCCeEe
Q 039402 1422 QQTLRQHFSDCTVLTIAHRITSV----------IDSDLVLLLNHGLIE 1459 (1496)
Q Consensus 1422 q~~I~~~f~~~TVI~IAHRl~ti----------~~~DrIlVL~~G~Iv 1459 (1496)
+.+++. .+.|+|++||--.+- ...-.|..+..|+-+
T Consensus 262 -~~~~~~-~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 262 -RQFNEA-VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp -HHHHHH-SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred -HHHHHh-cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 222222 378999999943221 113468888888765
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.3e-11 Score=144.08 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=94.0
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHH--HhcccCCCc-----cEEEECCeeC-CCCChHHHhcccEEEcccccccccchhhc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQT--LFRIVEPAA-----GQILIDGIDI-SLIGLHDLRSRLSIIPQDPVMFEGTVRSN 1340 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~--L~rl~ep~~-----G~I~IDG~dI-~~i~l~~LR~~i~iIpQdp~LF~gTIR~N 1340 (1496)
-|++|+.++|+|++|||||||++. +.+..+++. +.|+||+.+. ....+..+++++++.|| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 456666544 4899999763 22223445566777665 45566
Q ss_pred cCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc--cCCCEEEEEcCCCCCCHHHH
Q 039402 1341 LDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL--KRSKILMLDEATASVDTATD 1418 (1496)
Q Consensus 1341 Ldp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL--r~~~ILiLDEaTsslD~~Td 1418 (1496)
+.....++-++. .+++.-++.++ .+|+++|+||+|+.+|.+..
T Consensus 247 i~~~~~~~~~~~-----------------------------------~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYARAYNADHQ-----------------------------------LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEECCSHHHH-----------------------------------HHHHHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEeccCChHHH-----------------------------------HHHHHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence 543322222222 22222233332 46999999999999997654
Q ss_pred ------------HHHHHHHHHhc--CCcEEEEEccCcch-------------------hcc-cCEEEEEeCCe
Q 039402 1419 ------------NLIQQTLRQHF--SDCTVLTIAHRITS-------------------VID-SDLVLLLNHGL 1457 (1496)
Q Consensus 1419 ------------~~Iq~~I~~~f--~~~TVI~IAHRl~t-------------------i~~-~DrIlVL~~G~ 1457 (1496)
..+.+.|++.. .++|||+|+|-..+ +.+ +|.+++|++|+
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 34455555443 37999999998322 233 89999999874
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-11 Score=145.65 Aligned_cols=117 Identities=17% Similarity=0.100 Sum_probs=78.3
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-CCccEEEEC-CeeCCCCChHHHhcccEEEccccccccc-chh
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-PAAGQILID-GIDISLIGLHDLRSRLSIIPQDPVMFEG-TVR 1338 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-p~~G~I~ID-G~dI~~i~l~~LR~~i~iIpQdp~LF~g-TIR 1338 (1496)
-++++++. .+|+.++|+|+||||||||+++|.|+.. |..|+|.++ |.+.. ...+.+++++||++.+++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46677764 4799999999999999999999999999 999999997 76643 2356789999999988876 899
Q ss_pred hccCCCCCCcHHHHHH----HHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1339 SNLDPLEESTDEQIWE----ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1339 ~NLdp~~~~sd~eI~~----aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
++-. ...+.+++.+ +++.+++.++ ....-.++| ||+||++||+++
T Consensus 280 e~~l--~~l~~~e~~~~~~e~l~~~gl~~f-----------~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGL--WHLEPEQITQGFVEFHDYLGHCKY-----------RDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCC--CCCCHHHHHHTSGGGGGGTTCSSS-----------TTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhhh--cCCCHHHHHHHHHHHHHHcCCchh-----------cCCCcccCC-HHHHHHHHHhcC
Confidence 9732 2344444432 3333333222 222345789 999999999985
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-13 Score=164.06 Aligned_cols=141 Identities=19% Similarity=0.116 Sum_probs=97.5
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC----ChHHHhc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI----GLHDLRS 1321 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~~LR~ 1321 (1496)
++++|+.+.|.. ..+|+++ + .++|+.++|+|+|||||||++++|.+++.|++|+|.++|.++... ....++.
T Consensus 144 ~~l~~Lg~~~~~--~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 144 LDLHSLGMTAHN--HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCGGGSCCCHHH--HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCHHHcCCCHHH--HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence 344555554421 2367777 5 389999999999999999999999999999999999999887421 1223455
Q ss_pred ccEEEc---------cccccc--c-----cchhhccCCC----------CCCcHHHHHHHHHHcCCcHHHHhccCCcccc
Q 039402 1322 RLSIIP---------QDPVMF--E-----GTVRSNLDPL----------EESTDEQIWEALDKCQLGDEVRKKEGKLDSK 1375 (1496)
Q Consensus 1322 ~i~iIp---------Qdp~LF--~-----gTIR~NLdp~----------~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~ 1375 (1496)
++++.+ |||.++ . -|+++|+... ...+..+..+.|...++.+..
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~---------- 289 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL---------- 289 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH----------
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH----------
Confidence 565544 888653 2 2677776421 111223455566666665431
Q ss_pred cccCCCCCCchHHHHHHHHHHHccCCCEEE
Q 039402 1376 VTENGENWSMGQRQLVCLGRVLLKRSKILM 1405 (1496)
Q Consensus 1376 v~e~G~nLS~GQrQll~LARALLr~~~ILi 1405 (1496)
...+|||||+|| |||+++.+|++..
T Consensus 290 ---~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 ---ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp ---HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred ---HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 124689999999 9999999999875
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.11 E-value=9e-11 Score=131.82 Aligned_cols=145 Identities=14% Similarity=0.187 Sum_probs=79.7
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhc--CCCC-----CccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHH
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILG--EVPK-----ISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNA 714 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG--~~~~-----~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~ 714 (1496)
-+++|++++|+||+|||||||++.|++ ..++ ..|.+++++... ++.++..+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~----------------------~~~~~~~~ 77 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT----------------------FRPERLLA 77 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC----------------------CCHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC----------------------cCHHHHHH
Confidence 479999999999999999999999999 4554 445555544210 11122222
Q ss_pred HHHHhchhhH--HHhccCCCcccccCCCCCCChHHHHH-HHHHHHHc--cCCCEEEEecCCCCCCHH-------H-----
Q 039402 715 VLDACSLKKD--LEILSFGDQTVIGERGINLSGGQKQR-IQIARALY--QDSDIYLFDDPFSAVDAH-------T----- 777 (1496)
Q Consensus 715 v~~~~~l~~d--~~~l~~g~~t~ig~~g~~LSGGQkqR-v~LARAl~--~~~~illLDep~saLD~~-------~----- 777 (1496)
..+..+...+ ++.+. + ....++.+... +.-++++. .+|+++++|||++.+|+. .
T Consensus 78 ~~~~~g~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~ 148 (243)
T 1n0w_A 78 VAERYGLSGSDVLDNVA------Y---ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMH 148 (243)
T ss_dssp HHHHTTCCHHHHHHTEE------E---EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHH
T ss_pred HHHHcCCCHHHHhhCeE------E---EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHH
Confidence 2222221110 01110 0 01234444332 33233333 589999999999999985 3
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEccCcCc-------------------cc-cCCEEEEEeCC
Q 039402 778 GSHLFQEVLLGLL-SSKTVIYVTHQVEF-------------------LP-AADLILVMKDG 817 (1496)
Q Consensus 778 ~~~i~~~~~~~~~-~~~tvilvtH~~~~-------------------l~-~~d~i~~l~~G 817 (1496)
..+++..+..... .+.|||+++|.... +. .||.+++|++|
T Consensus 149 ~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 149 LARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 1223333322222 38999999996542 22 48999999865
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.7e-12 Score=151.26 Aligned_cols=199 Identities=13% Similarity=0.028 Sum_probs=123.1
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc---ccCCCCCCCCccE---------
Q 039402 551 VPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDL---VEKQPSGSSETAL--------- 618 (1496)
Q Consensus 551 ~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~---~~~~~~~~~~~~i--------- 618 (1496)
+.++.+.+..++.++..+..| .+......+..+..+..|++.++ .++.+... ..+.+. ...+
T Consensus 63 ~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl-~p~~~~~~~~~~ir~~~---~~~itl~~l~~~g 136 (361)
T 2gza_A 63 PNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR-PPACEHGTISVTIRKPS---FTRRTLEDYAQQG 136 (361)
T ss_dssp TTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC-TTTBCTTCCEEEEECCC---CCCCCHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe-cCccCCCCeEEEEEecC---CCCCCHHHHHhcC
Confidence 468888887777666554444 12111112222233455766665 22111100 000010 1123
Q ss_pred EEEeeEEE---ecCCCCCCce---------eeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC-----
Q 039402 619 DIVDGNFS---WDISSHNPTL---------KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----- 681 (1496)
Q Consensus 619 ~~~~~~~~---~~~~~~~~~L---------~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g----- 681 (1496)
++++++|+ |+.. ++++| +++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~ 215 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELF 215 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccC
Confidence 56677776 5311 12344 999999999999999999999999999999999999999999976
Q ss_pred ------eeEEEc-cCCcc---CCCcHHHHhccCCCCCHHHH-HHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHH
Q 039402 682 ------TKAYVA-QSPWI---QSGKIEDNILFGKEMNRERY-NAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750 (1496)
Q Consensus 682 ------~~~yv~-Q~~~i---~~~ti~eNI~~g~~~~~~~~-~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 750 (1496)
.++|++ |++.. +..|+++||..+...+.+.. ...++.....+.++.++.|..|.+++-+.+-..+..+|
T Consensus 216 ~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~R 295 (361)
T 2gza_A 216 LPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFER 295 (361)
T ss_dssp CTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHHH
T ss_pred ccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHH
Confidence 258999 88775 67899999988654322110 00001112334577788899998898888889999999
Q ss_pred HHHHHH
Q 039402 751 IQIARA 756 (1496)
Q Consensus 751 v~LARA 756 (1496)
+.....
T Consensus 296 l~~l~~ 301 (361)
T 2gza_A 296 LALMVL 301 (361)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 987753
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.09 E-value=9.2e-14 Score=150.59 Aligned_cols=155 Identities=12% Similarity=0.021 Sum_probs=95.9
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------eEEEccCCcc-CCCcHHHHhccCCCCCHHHHHHHHH
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------KAYVAQSPWI-QSGKIEDNILFGKEMNRERYNAVLD 717 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------~~yv~Q~~~i-~~~ti~eNI~~g~~~~~~~~~~v~~ 717 (1496)
|++++|+||||||||||++.|++ +.+|.+.++|. .++++|.+.. .+.++++|+.+. .+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~ 67 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL-----------TV 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH-----------HH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH-----------HH
Confidence 78999999999999999999997 67888888763 2344443311 122444444321 00
Q ss_pred HhchhhHHHhccCCCcccc----c----CCCCCC--ChHHHHHHHHHH------HHccCCCEEEEecCCCCCCHHHHHHH
Q 039402 718 ACSLKKDLEILSFGDQTVI----G----ERGINL--SGGQKQRIQIAR------ALYQDSDIYLFDDPFSAVDAHTGSHL 781 (1496)
Q Consensus 718 ~~~l~~d~~~l~~g~~t~i----g----~~g~~L--SGGQkqRv~LAR------Al~~~~~illLDep~saLD~~~~~~i 781 (1496)
.. . ..+....+ + +...++ |+||+||+.++. +++.+++...+|+ ++|+.....
T Consensus 68 ~~-----~---~~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~- 135 (189)
T 2bdt_A 68 NF-----L---LAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL- 135 (189)
T ss_dssp HH-----H---HTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-
T ss_pred HH-----H---hcCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-
Confidence 00 0 00111111 0 111234 888888888888 8888888887883 789987776
Q ss_pred HHHHHHHHhCCcEEEEEccC-cCcccc-CCEEEEEeCCeEEEecChHHH
Q 039402 782 FQEVLLGLLSSKTVIYVTHQ-VEFLPA-ADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 782 ~~~~~~~~~~~~tvilvtH~-~~~l~~-~d~i~~l~~G~i~~~G~~~~l 828 (1496)
++........+.++|.+||. ++.+.. ||+|+ ++|+++..|+++-+
T Consensus 136 ~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 136 VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 55433322346899999999 888876 99998 99999999887544
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-10 Score=138.44 Aligned_cols=75 Identities=29% Similarity=0.400 Sum_probs=64.2
Q ss_pred CCCCChHHHHHH------HHHHHHccC-CCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEE
Q 039402 740 GINLSGGQKQRI------QIARALYQD-SDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLIL 812 (1496)
Q Consensus 740 g~~LSGGQkqRv------~LARAl~~~-~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 812 (1496)
..+||||||||+ ++|||+..+ |+++||||||++||+.....+.+. +....++++||++||+.+....||+++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~-l~~~~~~~~vi~~th~~~~~~~~d~~~ 356 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEI-FRKVKSIPQMIIITHHRELEDVADVII 356 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHH-HHHCCSCSEEEEEESCGGGGGGCSEEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHH-HHHhccCCeEEEEEChHHHHhhCCEEE
Confidence 357999999988 567999999 999999999999999999888754 444445679999999998656699999
Q ss_pred EEe
Q 039402 813 VMK 815 (1496)
Q Consensus 813 ~l~ 815 (1496)
+|+
T Consensus 357 ~l~ 359 (371)
T 3auy_A 357 NVK 359 (371)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-10 Score=121.41 Aligned_cols=92 Identities=22% Similarity=0.246 Sum_probs=70.9
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCcc--EEEECCeeCCCCChHHHhcccEEEcccccccccchhh
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG--QILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRS 1339 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G--~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~ 1339 (1496)
+|+++ +|+.++|+|++|+|||||++++.+.+.+ +| .+++++.++..-
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56666 8999999999999999999999999987 57 677766543211
Q ss_pred ccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHH
Q 039402 1340 NLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN 1419 (1496)
Q Consensus 1340 NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~ 1419 (1496)
+++.++++|+||||++ +|...++
T Consensus 79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 2367899999999998 6655577
Q ss_pred HHHHHHHHhc-CCcE-EEEEccCc
Q 039402 1420 LIQQTLRQHF-SDCT-VLTIAHRI 1441 (1496)
Q Consensus 1420 ~Iq~~I~~~f-~~~T-VI~IAHRl 1441 (1496)
.+.+.+++.. +++| +|+++|+.
T Consensus 102 ~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 102 LLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HHHHHHHHHHHcCCcEEEEECCCC
Confidence 7888887654 3577 77777754
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4.7e-12 Score=143.30 Aligned_cols=145 Identities=21% Similarity=0.186 Sum_probs=94.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHh---cccCCCccEEEECCeeCCCCChHHHhcccEEEccccccccc-chhhccCC----
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLF---RIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLDP---- 1343 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~---rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~g-TIR~NLdp---- 1343 (1496)
++++++|+|++|||||||+++|. |+..|+.|+|.++|.+.. ..++..+..++|++.++.. |+.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999887642 2345566677887766554 77777632
Q ss_pred -------CCCC--cHHHHHHHHHH-cCCcHHHHhcc---CC-cccccccCCCCCCchHHHHHHHHHHH-ccCCCEEEEE-
Q 039402 1344 -------LEES--TDEQIWEALDK-CQLGDEVRKKE---GK-LDSKVTENGENWSMGQRQLVCLGRVL-LKRSKILMLD- 1407 (1496)
Q Consensus 1344 -------~~~~--sd~eI~~aL~~-~~L~~~i~~lp---~g-Ldt~v~e~G~nLS~GQrQll~LARAL-Lr~~~ILiLD- 1407 (1496)
...+ +.++.. .+.. .... .+--+. +. ++-........+|| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~-~l~~~~~~~-~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~ 172 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAE-ALDKICEVD-LVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDD 172 (246)
T ss_dssp CTTSCEEEESCCCSHHHHH-HHHTTCCCC-EEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCT
T ss_pred cCCCeEEEECCCCCHHHHH-HHHhhcCCC-EEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccc
Confidence 0011 222221 2211 1110 000000 00 00001122345787 44 788 9999999999
Q ss_pred ---cCCCCCCHHHHHHHHHHHHHhc
Q 039402 1408 ---EATASVDTATDNLIQQTLRQHF 1429 (1496)
Q Consensus 1408 ---EaTsslD~~Td~~Iq~~I~~~f 1429 (1496)
|||+++|..+.+.+++.+++..
T Consensus 173 ~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 173 VTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999988753
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=9.3e-12 Score=146.27 Aligned_cols=143 Identities=17% Similarity=0.132 Sum_probs=91.0
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCC--------CCCccEEEEcCee----------------------------EEE---
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEV--------PKISGTLKLCGTK----------------------------AYV--- 686 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~--------~~~~G~i~~~g~~----------------------------~yv--- 686 (1496)
=++++|+|+||||||||++.|+|.. .++.|+|.++|.. +++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3589999999999999999999997 7899999887632 234
Q ss_pred ccCCcc-CCCcHHHHhccCCCCCH-HHH---HHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 039402 687 AQSPWI-QSGKIEDNILFGKEMNR-ERY---NAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761 (1496)
Q Consensus 687 ~Q~~~i-~~~ti~eNI~~g~~~~~-~~~---~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 761 (1496)
+|++.+ +..++.||+.++.+..- ..+ ...-+...+...+....... .-+...+||||||||+..+++++.+|
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~---~~~~~~~ls~g~~Q~~~ad~ill~k~ 160 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVH---ADEQMNQFTIAQSQVGYADRILLTKT 160 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTT---HHHHHHHCHHHHHHHHTCSEEEEECT
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHH---HHHHHhhchHHHHHHHhCCEEEEECc
Confidence 465543 46688888877653210 011 01111111111111111000 00111269999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcC
Q 039402 762 DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVE 803 (1496)
Q Consensus 762 ~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~ 803 (1496)
|++ ||| ..+. +.++.+..+.|++++||+..
T Consensus 161 dl~--de~---------~~l~-~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 161 DVA--GEA---------EKLH-ERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp TTC--SCT---------HHHH-HHHHHHCSSSCEEECCSSCC
T ss_pred ccC--CHH---------HHHH-HHHHHhCCCCeEEEecccCC
Confidence 987 888 2333 33444456899999999743
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-11 Score=128.32 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=62.8
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCee--------EEEccCCccCCCcHHHHhc-c
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------AYVAQSPWIQSGKIEDNIL-F 703 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~--------~yv~Q~~~i~~~ti~eNI~-~ 703 (1496)
+.+++++||++++|++++|+||||||||||+++|+|.+ |++|+|.++|.. .|++|++.++..|+.||+. +
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~~ltv~e~l~~~ 98 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEELEFM 98 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECTTCSCTTHHHHS
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccccCCcHHHHHHc
Confidence 46899999999999999999999999999999999999 999999988731 2689998888779999984 4
Q ss_pred C
Q 039402 704 G 704 (1496)
Q Consensus 704 g 704 (1496)
|
T Consensus 99 g 99 (158)
T 1htw_A 99 G 99 (158)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-10 Score=139.08 Aligned_cols=148 Identities=18% Similarity=0.184 Sum_probs=94.0
Q ss_pred eeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCC-----------CCCccEEEEcC-eeEEEccCCccCCCcHHHHhcc
Q 039402 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV-----------PKISGTLKLCG-TKAYVAQSPWIQSGKIEDNILF 703 (1496)
Q Consensus 636 L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~-----------~~~~G~i~~~g-~~~yv~Q~~~i~~~ti~eNI~~ 703 (1496)
-++++|+++.|+.++|+|+||||||||+++|+|.. .|..|.|.+++ ..-.+.+.|-+..+ ..++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~-a~~~~-- 223 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG-ASEGK-- 223 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC-GGGSC--
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccc-hhhhh--
Confidence 47999999999999999999999999999999983 34455555544 33344454443321 11111
Q ss_pred CCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 039402 704 GKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783 (1496)
Q Consensus 704 g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~ 783 (1496)
.+... +.+.++.|.. -+..+.. + .+...+||+||+||+++||++..+|.++++ +.+|.... ..++
T Consensus 224 --~L~~~-fl~~~era~~--lL~vvDl---s--~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~ 288 (416)
T 1udx_A 224 --GLGLE-FLRHIARTRV--LLYVLDA---A--DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVK 288 (416)
T ss_dssp --CSCHH-HHHHHTSSSE--EEEEEET---T--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHH
T ss_pred --hhhHH-HHHHHHHHHh--hhEEeCC---c--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHH
Confidence 12222 2122221211 1111111 1 233457999999999999999999999999 99998765 4444
Q ss_pred HHHHHHh-CCcEEEEEccC
Q 039402 784 EVLLGLL-SSKTVIYVTHQ 801 (1496)
Q Consensus 784 ~~~~~~~-~~~tvilvtH~ 801 (1496)
.+...+. .+.+++.+|..
T Consensus 289 ~l~~~l~~~g~~vi~iSA~ 307 (416)
T 1udx_A 289 ALADALAREGLAVLPVSAL 307 (416)
T ss_dssp HHHHHHHTTTSCEEECCTT
T ss_pred HHHHHHHhcCCeEEEEECC
Confidence 4444333 36677777654
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.97 E-value=2.4e-10 Score=134.92 Aligned_cols=113 Identities=18% Similarity=0.182 Sum_probs=77.5
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC-CCccEEEEc-C---------eeEEEccCCccCCC-cHHHHh
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-KISGTLKLC-G---------TKAYVAQSPWIQSG-KIEDNI 701 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-~~~G~i~~~-g---------~~~yv~Q~~~i~~~-ti~eNI 701 (1496)
.-++++++. .+|++++|+||||||||||+++|+|..+ +.+|+|.++ | .++|++|+++++.. +++++-
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh
Confidence 346777764 4899999999999999999999999999 999999876 4 46999999987654 899865
Q ss_pred ccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 702 LFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 702 ~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
+.+ .+++...+ ...+.++.+ |.....+....+|| ||+||++||+++
T Consensus 283 l~~--l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 LWH--LEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CCC--CCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred hcC--CCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 433 33332221 111222222 23333456778999 999999999875
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-11 Score=138.93 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=84.4
Q ss_pred CCcEEEEEecCCCcHHHHHHHHh---cCCCCCccEEEEcCe---------eEEEccCCccC-CCcHHHHhcc--------
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCIL---GEVPKISGTLKLCGT---------KAYVAQSPWIQ-SGKIEDNILF-------- 703 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~il---G~~~~~~G~i~~~g~---------~~yv~Q~~~i~-~~ti~eNI~~-------- 703 (1496)
++++++|+||||||||||+++|+ |...++.|++..+|. +.+++|++.+. ..++.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999 999999998877642 23455665544 3477888753
Q ss_pred -----CCCCCHHHHHHHHHHhchhhHHH-hccCC----CcccccCCCCCCChHHHHHHHHHHHH-ccCCCEEEEe----c
Q 039402 704 -----GKEMNRERYNAVLDACSLKKDLE-ILSFG----DQTVIGERGINLSGGQKQRIQIARAL-YQDSDIYLFD----D 768 (1496)
Q Consensus 704 -----g~~~~~~~~~~v~~~~~l~~d~~-~l~~g----~~t~ig~~g~~LSGGQkqRv~LARAl-~~~~~illLD----e 768 (1496)
|.+...++.+...+... .++- .+... .....+++..+||| |+ ||+ +.+|++++|| |
T Consensus 106 ~~il~g~~~~~~~~~~l~~~~~--~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEALDKICE--VDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp CEEEESCCCSHHHHHHHHTTCC--CCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred eEEEECCCCCHHHHHHHHhhcC--CCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccc
Confidence 11222211111110000 0000 00000 01112455678999 66 888 9999999999 9
Q ss_pred CCCCCCHHHHHHHHHHH
Q 039402 769 PFSAVDAHTGSHLFQEV 785 (1496)
Q Consensus 769 p~saLD~~~~~~i~~~~ 785 (1496)
||+++|+.+...+.+.+
T Consensus 177 P~~~ld~~~~~~i~~~l 193 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARL 193 (246)
T ss_dssp BCBCCGGGSHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHH
Confidence 99999999877765443
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=8.1e-10 Score=118.51 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=77.3
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCC
Q 039402 1267 SCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEE 1346 (1496)
Q Consensus 1267 S~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~ 1346 (1496)
+|++++|+.++|+|++|+|||||++++.+.+.|.+|...+ +
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~------------------~--------------------- 72 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGY------------------F--------------------- 72 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCC------------------E---------------------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEE------------------E---------------------
Confidence 5678899999999999999999999999998776663110 0
Q ss_pred CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCC-CCCHHHHHHHHHHH
Q 039402 1347 STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATA-SVDTATDNLIQQTL 1425 (1496)
Q Consensus 1347 ~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTs-slD~~Td~~Iq~~I 1425 (1496)
.+-.++.+.+... .. .+ . .. -....+.+|++|+||||++ ++|+...+.+.+.+
T Consensus 73 ~~~~~~~~~~~~~-----~~---~~--------~--~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 73 FDTKDLIFRLKHL-----MD---EG--------K--DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp EEHHHHHHHHHHH-----HH---HT--------C--CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHH-----hc---Cc--------h--HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 1112222211110 00 00 0 00 0112245899999999996 89999999999999
Q ss_pred HHhc-CCcEEEEEccCcch
Q 039402 1426 RQHF-SDCTVLTIAHRITS 1443 (1496)
Q Consensus 1426 ~~~f-~~~TVI~IAHRl~t 1443 (1496)
++.. .++|+|++||+...
T Consensus 127 ~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 127 TYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHTTCEEEEECCCCSC
T ss_pred HHHHHcCCCEEEEcCCChh
Confidence 8765 68999999998754
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-10 Score=140.50 Aligned_cols=153 Identities=15% Similarity=0.191 Sum_probs=94.7
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhcc
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL 1341 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NL 1341 (1496)
--++++|+++.|++|||||++|||||||+++|.+..+ .+.+.+..++ ...+++|+|++. ..-++.++.
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~Dtp 213 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIP 213 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECC
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEecc
Confidence 4589999999999999999999999999999999843 4555555443 345777877651 111222222
Q ss_pred CCC------CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCH
Q 039402 1342 DPL------EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT 1415 (1496)
Q Consensus 1342 dp~------~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~ 1415 (1496)
-.. ..... +..+.++++.. .+ .-+|.. .+.-.++|+||+||..+||+|..+|.||++ +.+|.
T Consensus 214 Gli~~a~~~~~L~~-~fl~~~era~~--lL----~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl 281 (416)
T 1udx_A 214 GIIEGASEGKGLGL-EFLRHIARTRV--LL----YVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDL 281 (416)
T ss_dssp CCCCCGGGSCCSCH-HHHHHHTSSSE--EE----EEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTT
T ss_pred ccccchhhhhhhhH-HHHHHHHHHHh--hh----EEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCCh
Confidence 111 01111 11222222221 11 011111 122246899999999999999999999999 89998
Q ss_pred HHHHHHHHHHHHhc--CCcEEEEEcc
Q 039402 1416 ATDNLIQQTLRQHF--SDCTVLTIAH 1439 (1496)
Q Consensus 1416 ~Td~~Iq~~I~~~f--~~~TVI~IAH 1439 (1496)
.....+.+ +++.. .+++++.|+.
T Consensus 282 ~~~~~~~~-l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 282 LEEEAVKA-LADALAREGLAVLPVSA 306 (416)
T ss_dssp SCHHHHHH-HHHHHHTTTSCEEECCT
T ss_pred hhHHHHHH-HHHHHHhcCCeEEEEEC
Confidence 76533333 33332 3567776653
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.1e-10 Score=119.43 Aligned_cols=111 Identities=17% Similarity=0.135 Sum_probs=72.4
Q ss_pred eEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHh
Q 039402 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC 719 (1496)
Q Consensus 640 ~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~ 719 (1496)
++++++|+.++|+||+|+|||||+++|+|++.+.+|.. +.|+ +..+.+ .....
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-----~~~~---------~~~~~~-----------~~~~~-- 84 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-----GYFF---------DTKDLI-----------FRLKH-- 84 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-----CCEE---------EHHHHH-----------HHHHH--
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-----EEEE---------EHHHHH-----------HHHHH--
Confidence 46678899999999999999999999999987766631 1121 111111 11100
Q ss_pred chhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHHHHH-hCCcEEEE
Q 039402 720 SLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS-AVDAHTGSHLFQEVLLGL-LSSKTVIY 797 (1496)
Q Consensus 720 ~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s-aLD~~~~~~i~~~~~~~~-~~~~tvil 797 (1496)
... .+. .. -+...+.+|++++||||++ ++|+.....++ +++... .+++++|+
T Consensus 85 ----~~~---~~~--------~~----------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~-~ll~~~~~~~~~ii~ 138 (180)
T 3ec2_A 85 ----LMD---EGK--------DT----------KFLKTVLNSPVLVLDDLGSERLSDWQRELIS-YIITYRYNNLKSTII 138 (180)
T ss_dssp ----HHH---HTC--------CS----------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHH-HHHHHHHHTTCEEEE
T ss_pred ----Hhc---Cch--------HH----------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHH-HHHHHHHHcCCCEEE
Confidence 010 000 00 1122345999999999996 89998877665 455443 47899999
Q ss_pred EccCcC
Q 039402 798 VTHQVE 803 (1496)
Q Consensus 798 vtH~~~ 803 (1496)
+||...
T Consensus 139 tsn~~~ 144 (180)
T 3ec2_A 139 TTNYSL 144 (180)
T ss_dssp ECCCCS
T ss_pred EcCCCh
Confidence 999863
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.3e-12 Score=145.90 Aligned_cols=129 Identities=15% Similarity=0.124 Sum_probs=98.0
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccc-ccccc-ch
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDP-VMFEG-TV 1337 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~g-TI 1337 (1496)
+.+++++++++++| ++++||+|+|||||+++|.+...+ |.|.++|.++......+.+++++.++|++ ..+.. ++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 35899999999999 999999999999999999999876 79999999998777777888899999986 34433 77
Q ss_pred hhccCCCCCC-cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCC
Q 039402 1338 RSNLDPLEES-TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATA 1411 (1496)
Q Consensus 1338 R~NLdp~~~~-sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTs 1411 (1496)
.+|+|-.... .+.+. + ...+.+.+++ ..|||||+|+..+++|+..+|++| |||+.
T Consensus 109 ~Deid~~~~~r~~~~~-~-----~~~~~~~~~l-----------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 109 FDEVDALCPRRSDRET-G-----ASVRVVNQLL-----------TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EETCTTTCC---------------CTTHHHHHH-----------HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred eehhhhhhcccCCCcc-h-----HHHHHHHHHH-----------HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 8999854322 11110 0 1112222221 347999999999999999999985 99975
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-10 Score=134.32 Aligned_cols=113 Identities=13% Similarity=0.081 Sum_probs=80.4
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEE---CCeeCCCCChHHHh-cccEEEccccccc------ccchh
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI---DGIDISLIGLHDLR-SRLSIIPQDPVMF------EGTVR 1338 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~I---DG~dI~~i~l~~LR-~~i~iIpQdp~LF------~gTIR 1338 (1496)
++.+|+.++++|+||||||||+++|. +.+|++|+|.+ +|.++.+.. ...+ .++++++|+|-+. .-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~-~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV-RLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE-EEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE-EEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45579999999999999999999999 99999999999 999987654 2223 3799999999542 3478
Q ss_pred hccC---C--------CCC--C---cHHHHHHHHHHcCCcH-HHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1339 SNLD---P--------LEE--S---TDEQIWEALDKCQLGD-EVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1339 ~NLd---p--------~~~--~---sd~eI~~aL~~~~L~~-~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
+|+. | +.. + .+..+.++++..++.+ ...+.| ..||+.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 8872 2 211 1 2356889999999976 444433 247988888999987
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.92 E-value=8e-10 Score=134.48 Aligned_cols=140 Identities=20% Similarity=0.219 Sum_probs=93.4
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------------eEEEccCCccC-CCc
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------------KAYVAQSPWIQ-SGK 696 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------------~~yv~Q~~~i~-~~t 696 (1496)
+++||++++|++++|+|+||||||||+++|+|.+++.+|+|.+.|. ++|++|++..+ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5788899999999999999999999999999999999999998641 47888887644 457
Q ss_pred HHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCC--CCCCChHHHHHHHHHHHHcc-CC-CEEEEecCCCC
Q 039402 697 IEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGER--GINLSGGQKQRIQIARALYQ-DS-DIYLFDDPFSA 772 (1496)
Q Consensus 697 i~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~--g~~LSGGQkqRv~LARAl~~-~~-~illLDep~sa 772 (1496)
+++||.++..- + .|+-.+ +| .|.. -.+|-.--+||+.++|++.. .| +++|..|++++
T Consensus 364 V~e~l~~a~~~------------~--~DvVLI----DT-aGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG 424 (503)
T 2yhs_A 364 IFDAIQAAKAR------------N--IDVLIA----DT-AGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG 424 (503)
T ss_dssp HHHHHHHHHHT------------T--CSEEEE----CC-CCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT
T ss_pred HHHHHHHHHhc------------C--CCEEEE----eC-CCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc
Confidence 88888664210 0 011000 11 0110 01222334688999998754 45 46777778888
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEcc
Q 039402 773 VDAHTGSHLFQEVLLGLLSSKTVIYVTH 800 (1496)
Q Consensus 773 LD~~~~~~i~~~~~~~~~~~~tvilvtH 800 (1496)
.|+....+-|++ .-+.|.|++||
T Consensus 425 q~al~~ak~f~~-----~~~itgvIlTK 447 (503)
T 2yhs_A 425 QNAVSQAKLFHE-----AVGLTGITLTK 447 (503)
T ss_dssp HHHHHHHHHHHH-----HTCCSEEEEEC
T ss_pred HHHHHHHHHHHh-----hcCCCEEEEEc
Confidence 665432222211 23789999999
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.8e-10 Score=114.34 Aligned_cols=93 Identities=20% Similarity=0.307 Sum_probs=65.2
Q ss_pred ceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHH
Q 039402 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNA 714 (1496)
Q Consensus 635 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~ 714 (1496)
+|+++ +|+.++|+||+|||||||++++.|++.+ +|. +..|++.......
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-----~~~~~~~~~~~~~-------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-----NAAYIDAASMPLT-------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-----CEEEEETTTSCCC--------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-----cEEEEcHHHhhHH--------------------
Confidence 45665 8999999999999999999999999876 461 2334433221110
Q ss_pred HHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCc
Q 039402 715 VLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSK 793 (1496)
Q Consensus 715 v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~ 793 (1496)
+++.+|++++||||++ +|....+.+++ +++.. .+|+
T Consensus 79 -----------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~-li~~~~~~g~ 115 (149)
T 2kjq_A 79 -----------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFS-IFNRFRNSGK 115 (149)
T ss_dssp -----------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHH-HHHHHHHHTC
T ss_pred -----------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHH-HHHHHHHcCC
Confidence 2357899999999998 66555666664 45443 4578
Q ss_pred E-EEEEccC
Q 039402 794 T-VIYVTHQ 801 (1496)
Q Consensus 794 t-vilvtH~ 801 (1496)
+ +|++||.
T Consensus 116 ~~iiits~~ 124 (149)
T 2kjq_A 116 GFLLLGSEY 124 (149)
T ss_dssp CEEEEEESS
T ss_pred cEEEEECCC
Confidence 8 7777774
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-12 Score=143.64 Aligned_cols=146 Identities=12% Similarity=0.133 Sum_probs=57.8
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHh-ccc------------CCCccEEEECCeeCCCCChHHHhcccEEEcc
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLF-RIV------------EPAAGQILIDGIDISLIGLHDLRSRLSIIPQ 1328 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~-rl~------------ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQ 1328 (1496)
-.+++||++++|+.+||+|+||||||||+++|. +++ +|..|++ +|++....+...++.. +.+
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~~ 90 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CSN 90 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HHT
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hhc
Confidence 578999999999999999999999999999999 998 4444443 4433332222222221 112
Q ss_pred cccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH-HHHH-HHccCCCEEEE
Q 039402 1329 DPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV-CLGR-VLLKRSKILML 1406 (1496)
Q Consensus 1329 dp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll-~LAR-ALLr~~~ILiL 1406 (1496)
+.+++.+++..|+-. .+.+++.++++.... .+ +|..+. | ...-++++ .-++ +++..|+..++
T Consensus 91 ~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~--vi------ld~~~~--g---~~~~~~~~~~~~~~v~v~~~~~~~l 154 (231)
T 3lnc_A 91 GEIIEHAEVFGNFYG---VPRKNLEDNVDKGVS--TL------LVIDWQ--G---AFKFMEMMREHVVSIFIMPPSMEEL 154 (231)
T ss_dssp TCEEEEEEETTEEEE---EECTTHHHHHHHTCE--EE------EECCHH--H---HHHHHHHSGGGEEEEEEECSCHHHH
T ss_pred CceehhhhhccccCC---CCHHHHHHHHHcCCe--EE------EEcCHH--H---HHHHHHhcCCCeEEEEEECCcHHHH
Confidence 333333334444311 122334444443210 00 111000 0 00113332 1122 23556677778
Q ss_pred EcCCCCCCHHHHHHHHHHHHHh
Q 039402 1407 DEATASVDTATDNLIQQTLRQH 1428 (1496)
Q Consensus 1407 DEaTsslD~~Td~~Iq~~I~~~ 1428 (1496)
||.+++.|..+++.+++.|++.
T Consensus 155 ~~Rl~~R~~~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 155 RRRLCGRRADDSEVVEARLKGA 176 (231)
T ss_dssp HHC--------------CHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHH
Confidence 8999999999988888877654
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.91 E-value=5.6e-12 Score=156.53 Aligned_cols=161 Identities=17% Similarity=0.160 Sum_probs=100.3
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCee----------EEEccCCccC-CCcHHHHhc
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----------AYVAQSPWIQ-SGKIEDNIL 702 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~----------~yv~Q~~~i~-~~ti~eNI~ 702 (1496)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.+.|.. +++.|..... ..|..+++.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 46788999999999999999999999999999999999999999998743 3445443311 135665543
Q ss_pred -----------cCCCCCHHHHHHHHHHhch-------------hhHHHhc---cCCCccccc-------CCCCCCChHHH
Q 039402 703 -----------FGKEMNRERYNAVLDACSL-------------KKDLEIL---SFGDQTVIG-------ERGINLSGGQK 748 (1496)
Q Consensus 703 -----------~g~~~~~~~~~~v~~~~~l-------------~~d~~~l---~~g~~t~ig-------~~g~~LSGGQk 748 (1496)
+|.--+.+ ...++++... .+-++.+ +.+....+. .....+|||||
T Consensus 328 ~~LR~~PD~iivgEir~~E-~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGRE-AQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp TTGGGCCSEEEESCCCSTH-HHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HhhccCCCeEEeCCcCHHH-HHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 23322233 3334444321 1111211 122111111 23346899999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEE--EccCcCcccc
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIY--VTHQVEFLPA 807 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvil--vtH~~~~l~~ 807 (1496)
||.++|. + | ++++|+..++.+++.+..-...++|+++ +||+++.+..
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 9987752 1 6 9999998765443322221224788875 8999876643
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-09 Score=130.04 Aligned_cols=150 Identities=15% Similarity=0.180 Sum_probs=82.7
Q ss_pred EEeCCcEEEEEecCCCcHHHHHH--HHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHh
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLS--CILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC 719 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~--~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~ 719 (1496)
-+++|++++|+||+|||||||++ ++.+..++..|. -.+...|+.-+. .++.++..+..+..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg--~~~~viyid~E~---------------~~~~~rl~~~a~~~ 236 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGG--GEGKCLYIDTEG---------------TFRPVRLVSIAQRF 236 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC--CSSEEEEEESSS---------------CCCHHHHHHHHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCC--CCCcEEEEeCCC---------------ccCHHHHHHHHHHc
Confidence 47899999999999999999999 456777775551 012233332221 12233333334444
Q ss_pred chhhH--HHhccCCCcccccCCCCCCCh-HHHHHHHHHHHHc--cCCCEEEEecCCCCCCHHHH------------HHHH
Q 039402 720 SLKKD--LEILSFGDQTVIGERGINLSG-GQKQRIQIARALY--QDSDIYLFDDPFSAVDAHTG------------SHLF 782 (1496)
Q Consensus 720 ~l~~d--~~~l~~g~~t~ig~~g~~LSG-GQkqRv~LARAl~--~~~~illLDep~saLD~~~~------------~~i~ 782 (1496)
++..+ ++.+. +.. ..++ .|.+.+.-++++. .+|+++++|+|++.+|+... ..+.
T Consensus 237 gl~~~~vleni~------~~~---~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il 307 (400)
T 3lda_A 237 GLDPDDALNNVA------YAR---AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFM 307 (400)
T ss_dssp TCCHHHHHHTEE------EEE---CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHH
T ss_pred CCChHhHhhcEE------Eec---cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHH
Confidence 43221 11110 111 1111 2344444333332 47999999999999997543 2333
Q ss_pred HHHHHHHh-CCcEEEEEccCcC-------------------cccc-CCEEEEEeCC
Q 039402 783 QEVLLGLL-SSKTVIYVTHQVE-------------------FLPA-ADLILVMKDG 817 (1496)
Q Consensus 783 ~~~~~~~~-~~~tvilvtH~~~-------------------~l~~-~d~i~~l~~G 817 (1496)
+.+..... .+.|||+|+|... .+.+ +|.++.|+++
T Consensus 308 ~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 308 RALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 33222222 3899999999831 1233 7888888765
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-09 Score=126.54 Aligned_cols=142 Identities=14% Similarity=0.041 Sum_probs=101.0
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
+.++++++.|.+. + ++++|+ +|+.++|+|++|+||||++..|.+++.+.+|++.+.|.|+..-...+
T Consensus 77 ~~~~~l~~~~~~~-~---~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------- 143 (295)
T 1ls1_A 77 TVYEALKEALGGE-A---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------- 143 (295)
T ss_dssp HHHHHHHHHTTSS-C---CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH-------
T ss_pred HHHHHHHHHHCCC-C---ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH-------
Confidence 5566777777543 1 678888 99999999999999999999999999999999999998875422111
Q ss_pred EcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEE
Q 039402 1326 IPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILM 1405 (1496)
Q Consensus 1326 IpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILi 1405 (1496)
++....+..+ ++-.. .+..-...+.|+.+++++..++++++|
T Consensus 144 -------------------------ql~~~~~~~~-----------l~~~~--~~~~~~p~~l~~~~l~~~~~~~~D~vi 185 (295)
T 1ls1_A 144 -------------------------QLRLLGEKVG-----------VPVLE--VMDGESPESIRRRVEEKARLEARDLIL 185 (295)
T ss_dssp -------------------------HHHHHHHHHT-----------CCEEE--CCTTCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred -------------------------HHHHhcccCC-----------eEEEE--cCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 0001111111 21111 111123445678899999889999999
Q ss_pred EEcC-CCCCCHHHHHHHHHHHHHhcCCcEEEEEc
Q 039402 1406 LDEA-TASVDTATDNLIQQTLRQHFSDCTVLTIA 1438 (1496)
Q Consensus 1406 LDEa-TsslD~~Td~~Iq~~I~~~f~~~TVI~IA 1438 (1496)
+||| |+++|...-+.+.+..+...++.+++++.
T Consensus 186 iDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 186 VDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 9999 99999988888888877766666665553
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=6.7e-11 Score=131.67 Aligned_cols=128 Identities=17% Similarity=0.187 Sum_probs=102.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc---CCCccEEEE--------CCeeCCC-CChHHHhcccEEEcccc------cccc
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRIV---EPAAGQILI--------DGIDISL-IGLHDLRSRLSIIPQDP------VMFE 1334 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl~---ep~~G~I~I--------DG~dI~~-i~l~~LR~~i~iIpQdp------~LF~ 1334 (1496)
+.+|||+|++||||||+++.|.+.+ .++.|.|.. +|.++.. ..+.++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999998876 788999988 7888763 56778999999999987 4555
Q ss_pred cchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccc-cCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCC
Q 039402 1335 GTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVT-ENGENWSMGQRQLVCLGRVLLKRSKILMLDEATA 1411 (1496)
Q Consensus 1335 gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~-e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTs 1411 (1496)
.++.+++ .++++.+++..+..++.+.....+.++.+. ++|.-++|+ .++++++++++++|+++++.
T Consensus 85 ~~v~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 85 EDVSGEI------RTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp EECHHHH------TSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred eeCchhh------CCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 5777775 367899999999999999887666655443 455667776 45667888999999988763
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.9e-11 Score=145.28 Aligned_cols=115 Identities=17% Similarity=0.098 Sum_probs=76.7
Q ss_pred ceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------------eEEE---------cc
Q 039402 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------------KAYV---------AQ 688 (1496)
Q Consensus 635 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------------~~yv---------~Q 688 (1496)
+|+++ + .++|++++|+|||||||||||++|+|+++|.+|+|.+.+. +++. .|
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45555 3 3789999999999999999999999999999999987542 1232 36
Q ss_pred CCccC--C-----CcHHHHhccCC----------CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 689 SPWIQ--S-----GKIEDNILFGK----------EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 689 ~~~i~--~-----~ti~eNI~~g~----------~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
+|.+. . .|+++|+.++. ..+.......+...++.+. ....+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~-------------~~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF-------------LISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH-------------HHHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH-------------HHHHHHHHHHHHH-
Confidence 66542 1 26777765421 0111111112222232211 1346899999999
Q ss_pred HHHHHHccCCCEEEE
Q 039402 752 QIARALYQDSDIYLF 766 (1496)
Q Consensus 752 ~LARAl~~~~~illL 766 (1496)
|||+++.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998753
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=8.8e-11 Score=137.37 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=74.0
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEe-------------------eCCcEEEEEcCCCCCHHHHHHHHhcccC--CCc
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTF-------------------PGGEKTGIVGRTGSGKSTLIQTLFRIVE--PAA 1301 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I-------------------~~GekvgIVGrTGSGKSTLl~~L~rl~e--p~~ 1301 (1496)
.+.|+++||++.|. ++++++++++ ++|+.+||+|++|||||||+++|.+++. |++
T Consensus 35 ~~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp CTTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred ccccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 45699999999993 5899999998 8999999999999999999999999998 999
Q ss_pred cEEEE---CCeeCCCCChHHHhcccEEEcccccccc-cchhhcc
Q 039402 1302 GQILI---DGIDISLIGLHDLRSRLSIIPQDPVMFE-GTVRSNL 1341 (1496)
Q Consensus 1302 G~I~I---DG~dI~~i~l~~LR~~i~iIpQdp~LF~-gTIR~NL 1341 (1496)
|+|.+ ||.+.. ...|+.++++ |+..++. -|+.+|+
T Consensus 111 G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~ 149 (308)
T 1sq5_A 111 RRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLV 149 (308)
T ss_dssp CCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHH
T ss_pred CeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHH
Confidence 99999 998752 3456778888 7655432 2454444
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=9e-11 Score=138.79 Aligned_cols=150 Identities=13% Similarity=0.143 Sum_probs=95.7
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------------eEEEccCCccCC-
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------------KAYVAQSPWIQS- 694 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------------~~yv~Q~~~i~~- 694 (1496)
+.+|+++||++++|++++|+|+||||||||+++|+|.+.|++|+|.+.|. ++|++|++.++.
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 121 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIR 121 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccc
Confidence 45899999999999999999999999999999999999999999987652 478888877653
Q ss_pred ---------Cc---HHHHhc-c-------------CCCCCHHHHHHHHHHh-------------chhhHHHhccCC-Ccc
Q 039402 695 ---------GK---IEDNIL-F-------------GKEMNRERYNAVLDAC-------------SLKKDLEILSFG-DQT 734 (1496)
Q Consensus 695 ---------~t---i~eNI~-~-------------g~~~~~~~~~~v~~~~-------------~l~~d~~~l~~g-~~t 734 (1496)
|| ++|.+. + |....+....+..+.+ .+.+.+...+.- .-+
T Consensus 122 ~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvlN 201 (337)
T 2qm8_A 122 PSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVN 201 (337)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEE
T ss_pred cCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEEE
Confidence 11 233221 0 0000111100000000 000000001100 001
Q ss_pred cccC-CCCCCChHHHHHHHHHHHHcc------CCCEEEEecCCCCCCHHHHHHHHHHHH
Q 039402 735 VIGE-RGINLSGGQKQRIQIARALYQ------DSDIYLFDDPFSAVDAHTGSHLFQEVL 786 (1496)
Q Consensus 735 ~ig~-~g~~LSGGQkqRv~LARAl~~------~~~illLDep~saLD~~~~~~i~~~~~ 786 (1496)
.++. ....+|+|++|++..|++++. +|+++. +||+|......+++.+.
T Consensus 202 K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~ 256 (337)
T 2qm8_A 202 KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIE 256 (337)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHH
T ss_pred chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHH
Confidence 1111 124579999999999999987 688886 99999999888876543
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.83 E-value=8e-10 Score=120.82 Aligned_cols=119 Identities=14% Similarity=0.086 Sum_probs=80.5
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEccccccccc-chhhccCCC-
Q 039402 1267 SCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLDPL- 1344 (1496)
Q Consensus 1267 S~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~g-TIR~NLdp~- 1344 (1496)
|+++++|+.+||+|+||||||||+++|.+++ | .+.++|.++...+....+..+++++|++.+|.. +..+|+...
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 5788999999999999999999999999996 3 689999888887766678899999999988865 566665321
Q ss_pred ---C---CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcC
Q 039402 1345 ---E---ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEA 1409 (1496)
Q Consensus 1345 ---~---~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEa 1409 (1496)
+ ..+.+++.++++.. .+. + -.+..|-+.-++....++.+++++.|
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g------------~~v-i-------~d~~~~~~~~~~~~~~~~~~v~~~~~ 127 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAG------------RDV-L-------LEIDWQGARQIRELFPPALSIFILPP 127 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTT------------CEE-E-------EECCHHHHHHHHHHCTTCEEEEEECS
T ss_pred eeecccccchHHHHHHHHHcC------------CeE-E-------EEECHHHHHHHHHhCCCcEEEEEECc
Confidence 1 12345566655432 111 1 11234444455555666666777666
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-09 Score=127.13 Aligned_cols=102 Identities=12% Similarity=0.106 Sum_probs=68.9
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEE---CCeeCCCCChHHHhcccEEEccccc-------------
Q 039402 1268 CTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI---DGIDISLIGLHDLRSRLSIIPQDPV------------- 1331 (1496)
Q Consensus 1268 ~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~I---DG~dI~~i~l~~LR~~i~iIpQdp~------------- 1331 (1496)
|++.+|+.++|+|+||||||||+++|.|+..|++|+|.+ +|.++.+.......+++++|+|+|-
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456689999999999999999999999999999999999 9999876552211236999999995
Q ss_pred ---cccc-chhhccCCCC----CCcHHHHHHHHHHcCCc-HHHHhccC
Q 039402 1332 ---MFEG-TVRSNLDPLE----ESTDEQIWEALDKCQLG-DEVRKKEG 1370 (1496)
Q Consensus 1332 ---LF~g-TIR~NLdp~~----~~sd~eI~~aL~~~~L~-~~i~~lp~ 1370 (1496)
+|.. |+ +|+.... .-.+..+.++|++++|. +.....|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 3544 77 8886311 12345789999999995 55555554
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.4e-09 Score=123.46 Aligned_cols=133 Identities=15% Similarity=0.090 Sum_probs=82.5
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCee-------------------EEEccCCccCC-CcHHHHhc
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------------AYVAQSPWIQS-GKIEDNIL 702 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~-------------------~yv~Q~~~i~~-~ti~eNI~ 702 (1496)
.++|++++|+|||||||||+++.|+|.++|.+|+|.+.|.. .|++|.+.+.. .+++||+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999987632 47888776543 47888876
Q ss_pred cCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 039402 703 FGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLF 782 (1496)
Q Consensus 703 ~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~ 782 (1496)
++.. + ..|.-.+ +| .|... .-..=.++--.++|++..++++++||.++ +.|.....+-|
T Consensus 206 ~~~~----------~----~~d~vli----Dt-aG~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t-~~~~~~~~~~~ 264 (328)
T 3e70_C 206 HAKA----------R----GIDVVLI----DT-AGRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALA-GNAIVEQARQF 264 (328)
T ss_dssp HHHH----------H----TCSEEEE----EE-CCSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGG-TTHHHHHHHHH
T ss_pred HHHh----------c----cchhhHH----hh-ccchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHH-HHHHHHHHHHH
Confidence 5310 0 0111000 01 01100 00011223334899998887777887444 33332211111
Q ss_pred HHHHHHHhCCcEEEEEccC
Q 039402 783 QEVLLGLLSSKTVIYVTHQ 801 (1496)
Q Consensus 783 ~~~~~~~~~~~tvilvtH~ 801 (1496)
. ...+.|.|++||.
T Consensus 265 ----~-~~~~it~iilTKl 278 (328)
T 3e70_C 265 ----N-EAVKIDGIILTKL 278 (328)
T ss_dssp ----H-HHSCCCEEEEECG
T ss_pred ----H-HhcCCCEEEEeCc
Confidence 1 1247899999995
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.76 E-value=8.2e-09 Score=122.81 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=72.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc-CCCCCccEEEEcCe-----------eEEEccCCccC-CCcHHHHhccCCCCCHHHHHH
Q 039402 648 RVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGT-----------KAYVAQSPWIQ-SGKIEDNILFGKEMNRERYNA 714 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG-~~~~~~G~i~~~g~-----------~~yv~Q~~~i~-~~ti~eNI~~g~~~~~~~~~~ 714 (1496)
.+.|+||+|+||||++++++| .+.|..|.+.++|. ++|++|.+++. +.+- .+ ..+....++
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~ 111 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD-----MG-NNDRIVIQE 111 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----------CCHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh-----cC-CcchHHHHH
Confidence 389999999999999999999 67889999887753 35666665542 1110 00 011112223
Q ss_pred HHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcE
Q 039402 715 VLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKT 794 (1496)
Q Consensus 715 v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~t 794 (1496)
.++.... ..+. .+.. +||| +..+|+++++|||++ ||+.....+.+ .++...++.+
T Consensus 112 ~i~~~~~-----~~~~------~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~-~le~~~~~~~ 166 (354)
T 1sxj_E 112 LLKEVAQ-----MEQV------DFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRR-TMEKYSKNIR 166 (354)
T ss_dssp HHHHHTT-----TTC------------------------------CCEEEEEECTTS-SCHHHHHHHHH-HHHHSTTTEE
T ss_pred HHHHHHH-----hccc------cccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHH-HHHhhcCCCE
Confidence 3322211 1110 0111 5666 778999999999999 99998777764 4555556789
Q ss_pred EEEEccCcCcc
Q 039402 795 VIYVTHQVEFL 805 (1496)
Q Consensus 795 vilvtH~~~~l 805 (1496)
+|++||+++.+
T Consensus 167 ~Il~t~~~~~l 177 (354)
T 1sxj_E 167 LIMVCDSMSPI 177 (354)
T ss_dssp EEEEESCSCSS
T ss_pred EEEEeCCHHHH
Confidence 99999998754
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.76 E-value=3.2e-11 Score=144.32 Aligned_cols=170 Identities=14% Similarity=0.098 Sum_probs=111.6
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhc------------ccCCCccEEEECCeeCCCCC-hHHHhccc---EEEcccccc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFR------------IVEPAAGQILIDGIDISLIG-LHDLRSRL---SIIPQDPVM 1332 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~r------------l~ep~~G~I~IDG~dI~~i~-l~~LR~~i---~iIpQdp~L 1332 (1496)
.+++|+++||||++|+|||||+++|.| ..+|+.|.+.++|..+..+. ...-++.+ ..+++.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999 77899999999885422110 00011222 356677766
Q ss_pred ccc-chhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC--CEEEEEcC
Q 039402 1333 FEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS--KILMLDEA 1409 (1496)
Q Consensus 1333 F~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~--~ILiLDEa 1409 (1496)
..| |..++|. .+.+..++.+..--++-.. .+ ......+|++. +| +|+++||+
T Consensus 96 ~~~~s~~e~L~-------~~fl~~ir~~d~il~Vvd~---~~---d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGLG-------NAFLSHVRAVDAIYQVVRA---FD---DAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSSC-------HHHHHHHTTCSEEEEEEEC---CC---TTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHHH-------HHHHHHHHHHHHHHHHHhc---cc---cceeeeecccc------------Ccchhhhhchhh
Confidence 654 4444432 1233344433211011000 00 11122244442 78 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHh-cC-CcEEEEEccCcchhcc-cCEEE-EEeCC-eEeEecChh
Q 039402 1410 TASVDTATDNLIQQTLRQH-FS-DCTVLTIAHRITSVID-SDLVL-LLNHG-LIEEFDNPA 1465 (1496)
Q Consensus 1410 TsslD~~Td~~Iq~~I~~~-f~-~~TVI~IAHRl~ti~~-~DrIl-VL~~G-~IvE~g~p~ 1465 (1496)
++..|.+.-+...+.++.. .+ +.|+ ++|.+..+.. ||+|. +|++| +++..|++.
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999988888888776 43 4564 3999988876 99999 99999 888666543
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.4e-09 Score=129.64 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=62.7
Q ss_pred EEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH--------H
Q 039402 1247 DLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH--------D 1318 (1496)
Q Consensus 1247 ~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~--------~ 1318 (1496)
.+.++++.+. .+|+|+||+|++ |.+||+|+||||||||+++|.|+++|++|+|.++|.++...+.. .
T Consensus 8 ~l~~l~~~~~----~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~~ 82 (483)
T 3euj_A 8 KFRSLTLINW----NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGK 82 (483)
T ss_dssp EEEEEEEEEE----TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGGG
T ss_pred ceeEEEEecc----ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHHh
Confidence 4556655432 379999999999 99999999999999999999999999999999999998765432 1
Q ss_pred HhcccEEEcccc
Q 039402 1319 LRSRLSIIPQDP 1330 (1496)
Q Consensus 1319 LR~~i~iIpQdp 1330 (1496)
++..+.++.+++
T Consensus 83 ~~~~~~~~~~~~ 94 (483)
T 3euj_A 83 LKAGVCYAVLET 94 (483)
T ss_dssp SCSSEEEEEEEE
T ss_pred cCCCceEEEEeh
Confidence 233346665554
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-08 Score=118.38 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=73.7
Q ss_pred eeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC
Q 039402 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE 1345 (1496)
Q Consensus 1266 iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~ 1345 (1496)
+++..++|+.++|+|++||||||++..|.+.+.+.+|+|.+.+.|+.... .
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~---------------------a-------- 147 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA---------------------A-------- 147 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH---------------------H--------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH---------------------H--------
Confidence 34556789999999999999999999999999999999999888753211 0
Q ss_pred CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH---HHHHHHccCCCEEEEEcCCC
Q 039402 1346 ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV---CLGRVLLKRSKILMLDEATA 1411 (1496)
Q Consensus 1346 ~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll---~LARALLr~~~ILiLDEaTs 1411 (1496)
.+++...+++.++ +. + ...|+|+.|++ +++||+.++++++|+|||+.
T Consensus 148 ---~eqL~~~~~~~gl-----------~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 ---IEQLKIWGERVGA-----------TV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ---HHHHHHHHHHHTC-----------EE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ---HHHHHHHHHHcCC-----------cE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 1223233333332 11 1 13478999999 99999999999999999984
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.8e-09 Score=122.55 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=81.6
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHh---cccCCCccEEE--------ECCeeC-CCCChHHHhcccEEEccc
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLF---RIVEPAAGQIL--------IDGIDI-SLIGLHDLRSRLSIIPQD 1329 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~---rl~ep~~G~I~--------IDG~dI-~~i~l~~LR~~i~iIpQd 1329 (1496)
++++.+ ++|++|||+|++||||||++++|. |+..|++|.|+ .+|.++ ....+..+++++++++|+
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999999 999999 456788999999999965
Q ss_pred c------cccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcc
Q 039402 1330 P------VMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLD 1373 (1496)
Q Consensus 1330 p------~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLd 1373 (1496)
+ .++..++.+|+. .+++..+...+...+.|++....+.
T Consensus 96 ~~~~~~~~l~~~~v~~~i~------~~~v~~~~s~~~~~~~vr~~l~~~~ 139 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIR------TETVGNTASQAAAFPRVREALLRRQ 139 (252)
T ss_dssp ETTEEEEEETTEECTTGGG------SHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred CCCCceEEECCeehhHHHH------HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4 566678888864 4677788888888887766544333
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.5e-09 Score=123.33 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=70.8
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE---cCe-------------eEEEccCCccC------CCcHHH
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL---CGT-------------KAYVAQSPWIQ------SGKIED 699 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~---~g~-------------~~yv~Q~~~i~------~~ti~e 699 (1496)
++.+|++++++||||||||||+++|+ ..+|.+|+|.+ +|+ ++|++|+|.++ ..|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45679999999999999999999999 99999999998 652 48999999764 4578 8
Q ss_pred Hh--ccCC------------C--CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHH
Q 039402 700 NI--LFGK------------E--MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 755 (1496)
Q Consensus 700 NI--~~g~------------~--~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR 755 (1496)
|+ .|+. . ....+.+++++..++.++. .......|||.+++++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~----------~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCER----------YKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHH----------HHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHH----------HHHHHHHHHHHHHHHHHHhc
Confidence 88 5541 0 0122344555555543311 12334679999999999987
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-10 Score=139.05 Aligned_cols=157 Identities=12% Similarity=0.135 Sum_probs=104.7
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhc------------CCCCCccEEEEcC-----------------eeEEEccCCcc
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILG------------EVPKISGTLKLCG-----------------TKAYVAQSPWI 692 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG------------~~~~~~G~i~~~g-----------------~~~yv~Q~~~i 692 (1496)
.+++|..++|+|+||+|||||+++|.| .+.|+.|.+.++| ...++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 4578999999987 24577788876
Q ss_pred CCC-cHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CEEEEecC
Q 039402 693 QSG-KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS--DIYLFDDP 769 (1496)
Q Consensus 693 ~~~-ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~--~illLDep 769 (1496)
..+ +..|++ .. .+...++.+.. -+.....-+ ......++|+. || |+.++|||
T Consensus 96 ~~~~s~~e~L------~~-~fl~~ir~~d~--il~Vvd~~~----d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGL------GN-AFLSHVRAVDA--IYQVVRAFD----DAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSS------CH-HHHHHHTTCSE--EEEEEECCC----TTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHH------HH-HHHHHHHHHHH--HHHHHhccc----cceeeeecccc------------Ccchhhhhchhh
Confidence 543 332222 11 12222222211 011111111 12334456653 89 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHH-HhCCcEEEEEccCcCcccc-CCEEE-EEeCC-eEEEecCh
Q 039402 770 FSAVDAHTGSHLFQEVLLG-LLSSKTVIYVTHQVEFLPA-ADLIL-VMKDG-KITQAGKY 825 (1496)
Q Consensus 770 ~saLD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~-~d~i~-~l~~G-~i~~~G~~ 825 (1496)
++.+|+...+..++.+... ...|+|++ +|..+.+.. ||++. +|++| +++..|+.
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999887776543333 23466753 999887665 99999 89999 88766654
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-08 Score=118.16 Aligned_cols=138 Identities=14% Similarity=0.061 Sum_probs=90.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHH
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDE 1350 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ 1350 (1496)
++|+.++++|++||||||++..|.+.+.+.+| .++.++++|+. ..+.. +
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~-----------e 151 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAV-----------E 151 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHH-----------H
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHH-----------H
Confidence 47899999999999999999999999988778 25666777763 22222 2
Q ss_pred HHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-
Q 039402 1351 QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF- 1429 (1496)
Q Consensus 1351 eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f- 1429 (1496)
++....+..+ ++.... ..++..+.+++++ ++++++|+| |+++|+..+..+.+..+-.-
T Consensus 152 qL~~~~~~~g-----------l~~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 152 QLKTYAELLQ-----------APLEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp HHHHHHTTTT-----------CCCCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred HHHHHHHhcC-----------CCeEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 2222222222 111111 1134456677764 899999999 99999877776665443321
Q ss_pred --CCcEEEEE--ccCcchhcc-cCEEEEEeCCeEeE
Q 039402 1430 --SDCTVLTI--AHRITSVID-SDLVLLLNHGLIEE 1460 (1496)
Q Consensus 1430 --~~~TVI~I--AHRl~ti~~-~DrIlVL~~G~IvE 1460 (1496)
.+.+++++ +|..+.+.+ +|++-.++.|.|+-
T Consensus 211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 34456666 898777766 77666666677664
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=8.1e-11 Score=135.26 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=85.6
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eEEEccCC-ccC-CCcHH
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSP-WIQ-SGKIE 698 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~yv~Q~~-~i~-~~ti~ 698 (1496)
.+++++++++++| ++++||||||||||+++|+|+..+ |.+.++|. +++++|.+ ... .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999887 68888763 23444443 111 12444
Q ss_pred HHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC-------
Q 039402 699 DNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS------- 771 (1496)
Q Consensus 699 eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s------- 771 (1496)
|||-......... . .. . ......+...+|||||+||+.+++|+..+|+++ |+++.
T Consensus 110 Deid~~~~~r~~~--~-~~--~-----------~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 110 DEVDALCPRRSDR--E-TG--A-----------SVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp ETCTTTCC-------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred ehhhhhhcccCCC--c-ch--H-----------HHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 5554322110000 0 00 0 011122334579999999999999999999975 99864
Q ss_pred -----CCCHHHHHHHHHH
Q 039402 772 -----AVDAHTGSHLFQE 784 (1496)
Q Consensus 772 -----aLD~~~~~~i~~~ 784 (1496)
.-|......|++.
T Consensus 172 ~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKT 189 (274)
T ss_dssp EEECCSCCHHHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHH
Confidence 3367777767654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.9e-09 Score=116.66 Aligned_cols=140 Identities=20% Similarity=0.165 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCC-----------CccEEEECCeeCCC--CChHHHhcccEEEccccccccc--chhh
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEP-----------AAGQILIDGIDISL--IGLHDLRSRLSIIPQDPVMFEG--TVRS 1339 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep-----------~~G~I~IDG~dI~~--i~l~~LR~~i~iIpQdp~LF~g--TIR~ 1339 (1496)
+++|+|++|||||||++.|.+...+ ..|+|.+||.++.- .+....++..++++|...-..+ ++.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 8999999999999999999998765 57999999976531 1111122233444442211111 2333
Q ss_pred ccCCCCCCcHHHH---HHHHHH-cCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCH
Q 039402 1340 NLDPLEESTDEQI---WEALDK-CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT 1415 (1496)
Q Consensus 1340 NLdp~~~~sd~eI---~~aL~~-~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~ 1415 (1496)
+.++. +-+++ .+.++. +.....+...-++.|- ..-..+....||++.++|+++++| ||++|.
T Consensus 111 ~~~~~---s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl---------~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~ 176 (191)
T 1oix_A 111 IAKHL---TYENVERWLKELRDHADSNIVIMLVGNKSDL---------RHLRAVPTDEARAFAEKNGLSFIE--TSALDS 176 (191)
T ss_dssp TTCHH---HHHTHHHHHHHHHHHSCTTCEEEEEEECGGG---------GGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred CcCHH---HHHHHHHHHHHHHHhcCCCCcEEEEEECccc---------ccccccCHHHHHHHHHHcCCEEEE--EeCCCC
Confidence 32211 11111 111211 1100000000112221 111123467899999999999999 999999
Q ss_pred HHHHHHHHHHHHh
Q 039402 1416 ATDNLIQQTLRQH 1428 (1496)
Q Consensus 1416 ~Td~~Iq~~I~~~ 1428 (1496)
..-..+.+.|.+.
T Consensus 177 ~~v~~l~~~l~~~ 189 (191)
T 1oix_A 177 TNVEAAFQTILTE 189 (191)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9888888777653
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.61 E-value=4.5e-09 Score=121.88 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=56.3
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEE---CCeeCCCCChHHHhcccEEEcccccccc-----cchhhc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI---DGIDISLIGLHDLRSRLSIIPQDPVMFE-----GTVRSN 1340 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~I---DG~dI~~i~l~~LR~~i~iIpQdp~LF~-----gTIR~N 1340 (1496)
++.+|+.++|+|+||+|||||+++|.|+..|..|+|.+ +|.++++.. ...+..+++++|+|-++. -|+ +|
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HH
Confidence 45689999999999999999999999999999999999 898876543 222223899999997654 477 88
Q ss_pred cC-CCC------------C--C---cHHHHHHHHHHcCCcHH
Q 039402 1341 LD-PLE------------E--S---TDEQIWEALDKCQLGDE 1364 (1496)
Q Consensus 1341 Ld-p~~------------~--~---sd~eI~~aL~~~~L~~~ 1364 (1496)
|. .+. . + .+..+.++++..++.+.
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 72 111 1 1 23467888888888754
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-08 Score=127.13 Aligned_cols=94 Identities=19% Similarity=0.137 Sum_probs=74.5
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC--CccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccC--
Q 039402 1267 SCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP--AAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD-- 1342 (1496)
Q Consensus 1267 S~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep--~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLd-- 1342 (1496)
|+++++|.+++|+|++|+|||||++.|.+...+ ..|+| .+|.++.+....+.++.+++.+|.+.++.++++.||-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987654 78998 8899999999999999999999999999999999983
Q ss_pred CCCCCcHHHHHHHHHHcCC
Q 039402 1343 PLEESTDEQIWEALDKCQL 1361 (1496)
Q Consensus 1343 p~~~~sd~eI~~aL~~~~L 1361 (1496)
|...--..+...+++.++.
T Consensus 82 pG~~~f~~~~~~~l~~ad~ 100 (665)
T 2dy1_A 82 PGYGDFVGEIRGALEAADA 100 (665)
T ss_dssp CCSGGGHHHHHHHHHHCSE
T ss_pred CCccchHHHHHHHHhhcCc
Confidence 5332112455566655543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-10 Score=137.26 Aligned_cols=151 Identities=18% Similarity=0.187 Sum_probs=98.7
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCC-------cEEEEEcCCCCCHHHHHHHHhccc----CCCccEEEECCeeCCCC
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGG-------EKTGIVGRTGSGKSTLIQTLFRIV----EPAAGQILIDGIDISLI 1314 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~G-------ekvgIVGrTGSGKSTLl~~L~rl~----ep~~G~I~IDG~dI~~i 1314 (1496)
++.++++..|.. +.+++++++.+++| +.++|+||+|+|||||++++.+.+ .|++|.+..+|.|+..+
T Consensus 19 lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 19 LRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp TSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred cCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 334455555643 35899999999887 899999999999999999999998 67888888777665432
Q ss_pred ChHHH-hcccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCc---------HHHHh-cc-CCcccccccCCCC
Q 039402 1315 GLHDL-RSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLG---------DEVRK-KE-GKLDSKVTENGEN 1382 (1496)
Q Consensus 1315 ~l~~L-R~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~---------~~i~~-lp-~gLdt~v~e~G~n 1382 (1496)
- ..+ +..+.+|+|.+.++. |+.++|.+ +++.-+.. ..+.. ++ -++.. .......
T Consensus 97 ~-~~~~~~~v~~iDE~~~l~~-~~~e~L~~-----------~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~ 162 (334)
T 1in4_A 97 L-TSLERGDVLFIDEIHRLNK-AVEELLYS-----------AIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGL 162 (334)
T ss_dssp H-HHCCTTCEEEEETGGGCCH-HHHHHHHH-----------HHHTSCCCC---------------CCCEEEE-EESCGGG
T ss_pred H-HHccCCCEEEEcchhhcCH-HHHHHHHH-----------HHHhcccceeeccCcccccccccCCCeEEEE-ecCCccc
Confidence 1 122 457999999887765 67666632 11111100 00000 11 11211 1223357
Q ss_pred CCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHh
Q 039402 1383 WSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQH 1428 (1496)
Q Consensus 1383 LS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~ 1428 (1496)
||+|+|||++++ .++|+.+.+.+.+.|++.
T Consensus 163 Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~ 192 (334)
T 1in4_A 163 LSSPLRSRFGII----------------LELDFYTVKELKEIIKRA 192 (334)
T ss_dssp SCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHH
T ss_pred CCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHH
Confidence 999999998655 677877777777777664
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.4e-09 Score=130.52 Aligned_cols=162 Identities=14% Similarity=0.170 Sum_probs=96.0
Q ss_pred eeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc--ccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccC
Q 039402 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLFR--IVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD 1342 (1496)
Q Consensus 1265 ~iS~~I~~GekvgIVGrTGSGKSTLl~~L~r--l~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLd 1342 (1496)
.+++.+.++..+.|+|.|||||||++++|.. ++.++.|++.+.++|.+...+..+.. =|+++. ++-+|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecCHH
Confidence 3678889999999999999999999999876 66777899998888888765555432 122221 1211110
Q ss_pred CCC---CCcHHH---HHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH----------HHHHHHccCCC-EEE
Q 039402 1343 PLE---ESTDEQ---IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV----------CLGRVLLKRSK-ILM 1405 (1496)
Q Consensus 1343 p~~---~~sd~e---I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll----------~LARALLr~~~-ILi 1405 (1496)
-.. ....+| -.+.+++.++.+.-. ++..+. ..+|+||+|+. ++|+++-..|. +++
T Consensus 231 ~a~~~L~~~~~EmerR~~ll~~~Gv~~i~~-----yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 231 DAANALRWCVNEMERRYKLMSALGVRNLAG-----YNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSHHH-----HHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccHHH-----HHHHHH---HHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 000 000011 122333334332211 111111 12467776642 45677778888 789
Q ss_pred EEcCCCCCCHH---HHHHHHHHHHHhc-CCcEEEEEccCcc
Q 039402 1406 LDEATASVDTA---TDNLIQQTLRQHF-SDCTVLTIAHRIT 1442 (1496)
Q Consensus 1406 LDEaTsslD~~---Td~~Iq~~I~~~f-~~~TVI~IAHRl~ 1442 (1496)
+||+++-+|.. .++.+.+..+.-. .+.++|++|||++
T Consensus 303 IDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999988743 2334444444332 2789999999998
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.53 E-value=6.4e-07 Score=100.37 Aligned_cols=166 Identities=14% Similarity=0.153 Sum_probs=91.1
Q ss_pred cceee-eEEeeCCcEEEEEcCCCCCHHHHHHHH-hcccCCCccEEEECCeeCCCCChHHHh---cccEEEcccccccccc
Q 039402 1262 VLQGI-SCTFPGGEKTGIVGRTGSGKSTLIQTL-FRIVEPAAGQILIDGIDISLIGLHDLR---SRLSIIPQDPVMFEGT 1336 (1496)
Q Consensus 1262 vLk~i-S~~I~~GekvgIVGrTGSGKSTLl~~L-~rl~ep~~G~I~IDG~dI~~i~l~~LR---~~i~iIpQdp~LF~gT 1336 (1496)
.|+.+ .--+++|+.++|+|++|||||||+..+ ....+...+.+++++.. +..+++ .++++.+|++...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~~--- 83 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEEK--- 83 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHHH---
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhhC---
Confidence 45655 557899999999999999999996544 55555444556666532 233333 3466666653210
Q ss_pred hhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc--cCCCEEEEEcCCCCC-
Q 039402 1337 VRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL--KRSKILMLDEATASV- 1413 (1496)
Q Consensus 1337 IR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL--r~~~ILiLDEaTssl- 1413 (1496)
.|+...+.+.+ . .+. ... .+..+.+. +....++...++.++ .+++++++||+|+-.
T Consensus 84 --~~l~~~~~~~~-----~---~~~---~~~----~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~ 142 (247)
T 2dr3_A 84 --GMFAMVDAFTA-----G---IGK---SKE----YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYI 142 (247)
T ss_dssp --TSEEEEECSTT-----T---TCC-----C----CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTT
T ss_pred --CcEEEEecchh-----h---ccc---ccc----cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhc
Confidence 12210000000 0 000 000 00001111 123445555555555 469999999999877
Q ss_pred -CHHH-HHHHHHHHHHh-cCCcEEEEEccCcch--------h-cccCEEEEEeC
Q 039402 1414 -DTAT-DNLIQQTLRQH-FSDCTVLTIAHRITS--------V-IDSDLVLLLNH 1455 (1496)
Q Consensus 1414 -D~~T-d~~Iq~~I~~~-f~~~TVI~IAHRl~t--------i-~~~DrIlVL~~ 1455 (1496)
|... .+.+.+..+.. -.++|||+++|.... + ..||.|+.|+.
T Consensus 143 ~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 143 NKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 5422 33333333221 147999999997764 2 45899999975
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.51 E-value=1.8e-07 Score=110.87 Aligned_cols=143 Identities=20% Similarity=0.233 Sum_probs=85.6
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccE-EEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCC
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ-ILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEES 1347 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~-I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~ 1347 (1496)
-+++|+.+.|.|++|||||||+..+..-....+|. ++||.-.- ... ...+++++-+|+..++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~--~~~-~~a~~lG~~~~~l~i~-------------- 119 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA--LDP-EYAKKLGVDTDSLLVS-------------- 119 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCH-HHHHHTTCCGGGCEEE--------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC--cCH-HHHHHcCCCHHHeEEe--------------
Confidence 57899999999999999999988877555433443 45554321 111 1122333322221100
Q ss_pred cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccC--CCEEEEEcCCCCC----------CH
Q 039402 1348 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR--SKILMLDEATASV----------DT 1415 (1496)
Q Consensus 1348 sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~--~~ILiLDEaTssl----------D~ 1415 (1496)
.. .+ -.|.+.+++++.++ |+++|+||+|+-+ |.
T Consensus 120 ------------------------------~~---~~--~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 120 ------------------------------QP---DT--GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp ------------------------------CC---SS--HHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred ------------------------------cC---CC--HHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 00 01 13455678888765 9999999999988 22
Q ss_pred ---HHHHHHHHHHHHh-----cCCcEEEEEccCcc----------------hhc-ccCEEEEEeCCeEeEecC
Q 039402 1416 ---ATDNLIQQTLRQH-----FSDCTVLTIAHRIT----------------SVI-DSDLVLLLNHGLIEEFDN 1463 (1496)
Q Consensus 1416 ---~Td~~Iq~~I~~~-----f~~~TVI~IAHRl~----------------ti~-~~DrIlVL~~G~IvE~g~ 1463 (1496)
...+.+.+.+++. -.++|||+++|-.. .+. .||.++.+..+++...|+
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1112334444332 13899999999543 132 499999998887655443
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.48 E-value=5.9e-08 Score=112.77 Aligned_cols=108 Identities=17% Similarity=0.204 Sum_probs=72.3
Q ss_pred eEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHh
Q 039402 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC 719 (1496)
Q Consensus 640 ~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~ 719 (1496)
+++.++|++++|+|++||||||++..|++.+.+..|+|.+.+ .++ +.....++ .....+..
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~------~D~--~r~~a~eq-----------L~~~~~~~ 158 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA------ADT--FRAAAIEQ-----------LKIWGERV 158 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE------ECT--TCHHHHHH-----------HHHHHHHH
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc------ccc--ccHHHHHH-----------HHHHHHHc
Confidence 445678999999999999999999999999988877776543 222 11111111 11111111
Q ss_pred chhhHHHhccCCCcccccCCCCCCChHHHHHH---HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 039402 720 SLKKDLEILSFGDQTVIGERGINLSGGQKQRI---QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV 785 (1496)
Q Consensus 720 ~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv---~LARAl~~~~~illLDep~saLD~~~~~~i~~~~ 785 (1496)
+ ++ . ...+|||+.|++ ++++|+..++|++|+|+|.. .+....+++++
T Consensus 159 g-------l~-----~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL 208 (306)
T 1vma_A 159 G-------AT-----V----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEEL 208 (306)
T ss_dssp T-------CE-----E----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHH
T ss_pred C-------Cc-----E----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHH
Confidence 1 11 1 124689999999 99999999999999999974 34444555443
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.47 E-value=5.2e-10 Score=128.81 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=97.9
Q ss_pred EEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEE
Q 039402 1247 DLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSII 1326 (1496)
Q Consensus 1247 ~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iI 1326 (1496)
+++++...|.. +.+++++++++++| ++|+|++|+|||||+++|.+... .|.|.++|.++........+++++.+
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 45666666642 46899999999999 99999999999999999999885 79999999887665555667778888
Q ss_pred ccccc-cccc-chhhccCCCCCC-------cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1327 PQDPV-MFEG-TVRSNLDPLEES-------TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1327 pQdp~-LF~g-TIR~NLdp~~~~-------sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+|++. .+.. ++.||+|-+... .+++..+.+. .+. ..+||||+|+..+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~---------~ll-----------~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN---------QLL-----------VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHH---------HHH-----------HHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHH---------HHH-----------HHHhCCCCCCCEEEEEe
Confidence 88864 3333 667777522110 1122222221 111 13689999999999999
Q ss_pred ccCCCEEEEEcCC
Q 039402 1398 LKRSKILMLDEAT 1410 (1496)
Q Consensus 1398 Lr~~~ILiLDEaT 1410 (1496)
..+|++ |||+.
T Consensus 185 t~~p~~--ld~~l 195 (278)
T 1iy2_A 185 TNRPDI--LDPAL 195 (278)
T ss_dssp ESCTTS--SCHHH
T ss_pred cCCchh--CCHhH
Confidence 999987 67764
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=9.7e-08 Score=110.67 Aligned_cols=138 Identities=9% Similarity=0.073 Sum_probs=86.0
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhh
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKK 723 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~ 723 (1496)
++|++++++|+|||||||++..|++.+.+.+| .++.++.++++ ..+..|++.. ..+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-----~~V~lv~~D~~--r~~a~eqL~~-----------~~~~~g--- 161 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-----KKIAFITTDTY--RIAAVEQLKT-----------YAELLQ--- 161 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-----CCEEEEECCCS--STTHHHHHHH-----------HHTTTT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----CEEEEEecCcc--cchHHHHHHH-----------HHHhcC---
Confidence 46899999999999999999999999988777 25677888773 3333333211 000000
Q ss_pred HHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEE--
Q 039402 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL---SSKTVIYV-- 798 (1496)
Q Consensus 724 d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~---~~~tvilv-- 798 (1496)
+|. ... ..++..+.+++++ .++|++|+| |+++|+..... +.++..... ...+++++
T Consensus 162 ----l~~----~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~-~~el~~~l~~~~~~~~~lVl~a 222 (296)
T 2px0_A 162 ----APL----EVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQY-IDELKETIPFESSIQSFLVLSA 222 (296)
T ss_dssp ----CCC----CBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHH-HHHHHHHSCCCTTEEEEEEEET
T ss_pred ----CCe----Eec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHH-HHHHHHHHhhcCCCeEEEEEEC
Confidence 110 000 1235567788865 999999999 88999865433 334333222 22334444
Q ss_pred ccCcCcccc-CCEEEEEeCCeEEE
Q 039402 799 THQVEFLPA-ADLILVMKDGKITQ 821 (1496)
Q Consensus 799 tH~~~~l~~-~d~i~~l~~G~i~~ 821 (1496)
||..+.+.. ++++..++.+.++.
T Consensus 223 t~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 223 TAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp TBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEE
Confidence 888766544 66555566677665
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.5e-07 Score=100.32 Aligned_cols=170 Identities=15% Similarity=0.177 Sum_probs=86.1
Q ss_pred CCceeee-eEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhc-cCCCCCHH
Q 039402 633 NPTLKDI-NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNIL-FGKEMNRE 710 (1496)
Q Consensus 633 ~~~L~~i-~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~-~g~~~~~~ 710 (1496)
.+.|+++ .--+++|++++|+||+|||||||+..++....+..+ .+.|+.-+.. ...+.+... +|... +
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~------~v~~~~~e~~--~~~~~~~~~~~g~~~--~ 78 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE------PGIYVALEEH--PVQVRQNMAQFGWDV--K 78 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTC------CEEEEESSSC--HHHHHHHHHTTTCCC--H
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC------eEEEEEccCC--HHHHHHHHHHcCCCH--H
Confidence 3456665 556899999999999999999997655544332222 3344443321 012222221 22222 1
Q ss_pred HHHHHHHHhchhhHHHhcc--CCCcccccCCCCCCChHHHHHHHHHHHHc--cCCCEEEEecCCCCC--CHHHHHHHHHH
Q 039402 711 RYNAVLDACSLKKDLEILS--FGDQTVIGERGINLSGGQKQRIQIARALY--QDSDIYLFDDPFSAV--DAHTGSHLFQE 784 (1496)
Q Consensus 711 ~~~~v~~~~~l~~d~~~l~--~g~~t~ig~~g~~LSGGQkqRv~LARAl~--~~~~illLDep~saL--D~~~~~~i~~~ 784 (1496)
.+. +.-.+. ..+... .+.....+.....-+....+....++.++ .+|+++++|+|++.+ |+....+.+..
T Consensus 79 ~~~---~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~ 154 (247)
T 2dr3_A 79 PYE---EKGMFA-MVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQ 154 (247)
T ss_dssp HHH---HHTSEE-EEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHH
T ss_pred HHh---hCCcEE-EEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHH
Confidence 110 000000 000000 00000000000011122333334444443 579999999999888 55444455555
Q ss_pred HHHHH-hCCcEEEEEccCcCc--------c-ccCCEEEEEeC
Q 039402 785 VLLGL-LSSKTVIYVTHQVEF--------L-PAADLILVMKD 816 (1496)
Q Consensus 785 ~~~~~-~~~~tvilvtH~~~~--------l-~~~d~i~~l~~ 816 (1496)
+.+.. ..|.|+|+++|.... + ..||.|+.|+.
T Consensus 155 l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 155 LKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 44433 358899999998754 2 34899999964
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.47 E-value=9.1e-08 Score=117.89 Aligned_cols=171 Identities=16% Similarity=0.217 Sum_probs=108.6
Q ss_pred ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCcc-EEEECCeeCCCCChHHHhccc-----EEEcccccccc
Q 039402 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG-QILIDGIDISLIGLHDLRSRL-----SIIPQDPVMFE 1334 (1496)
Q Consensus 1261 ~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G-~I~IDG~dI~~i~l~~LR~~i-----~iIpQdp~LF~ 1334 (1496)
+.|++++.-+++|+.+.|.||+|+|||||+..+.+...+..| .+.+-+.+ .+...++.|+ ++-+|+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~~~~----- 262 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNINAQN----- 262 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCCHHH-----
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCCHHH-----
Confidence 368888888999999999999999999999999988766555 56665543 4456665553 222222
Q ss_pred cchhhccCCCCCCcHHHH---HHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc--cCCCEEEEEcC
Q 039402 1335 GTVRSNLDPLEESTDEQI---WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL--KRSKILMLDEA 1409 (1496)
Q Consensus 1335 gTIR~NLdp~~~~sd~eI---~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL--r~~~ILiLDEa 1409 (1496)
++. +..++++. .++++.. ... +-.+.+ ...+|.+|.+ ..+|.+. .+++++|+|++
T Consensus 263 --l~~-----g~l~~~~~~~~~~a~~~l------~~~----~l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l 322 (454)
T 2r6a_A 263 --LRT-----GKLTPEDWGKLTMAMGSL------SNA----GIYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYL 322 (454)
T ss_dssp --HHT-----SCCCHHHHHHHHHHHHHH------HSS----CEEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECG
T ss_pred --Hhc-----CCCCHHHHHHHHHHHHHH------hcC----CEEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccH
Confidence 111 13344442 3333322 111 112222 2468998876 5677776 57999999999
Q ss_pred CCCCCHH----H-H---HHHHHHHHHhc--CCcEEEEEcc-----------Ccc--------hhc-ccCEEEEEeCCeEe
Q 039402 1410 TASVDTA----T-D---NLIQQTLRQHF--SDCTVLTIAH-----------RIT--------SVI-DSDLVLLLNHGLIE 1459 (1496)
Q Consensus 1410 TsslD~~----T-d---~~Iq~~I~~~f--~~~TVI~IAH-----------Rl~--------ti~-~~DrIlVL~~G~Iv 1459 (1496)
+.-.+.. . . ..+.+.|+... .++|||+++| |+. .+. +||.|++|..++.-
T Consensus 323 ~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~ 402 (454)
T 2r6a_A 323 QLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYY 402 (454)
T ss_dssp GGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-
T ss_pred HHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccccc
Confidence 9866431 1 1 34444554432 3899999999 132 343 59999999987653
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-08 Score=116.96 Aligned_cols=61 Identities=26% Similarity=0.324 Sum_probs=41.1
Q ss_pred EEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE---cCe------------eEEEccCCccCC-----CcHHHH
Q 039402 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL---CGT------------KAYVAQSPWIQS-----GKIEDN 700 (1496)
Q Consensus 641 l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~---~g~------------~~yv~Q~~~i~~-----~ti~eN 700 (1496)
+++.+|++++|+||||+|||||+++|+|+.++..|+|.+ +|+ .+|++|+|.+.. .|+ ||
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 456789999999999999999999999999999999987 442 589999998754 477 88
Q ss_pred hc
Q 039402 701 IL 702 (1496)
Q Consensus 701 I~ 702 (1496)
+.
T Consensus 247 l~ 248 (307)
T 1t9h_A 247 LG 248 (307)
T ss_dssp HG
T ss_pred HH
Confidence 83
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=5.9e-09 Score=121.88 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=54.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEE-------------------eCCcEEEEEecCCCcHHHHHHHHhcCCC--CCc
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKV-------------------FHGMRVAVCGTVGSGKSSLLSCILGEVP--KIS 674 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i-------------------~~G~~~~ivG~~GsGKSTLl~~ilG~~~--~~~ 674 (1496)
..++++++++.|. ++++++++.+ ++|++++|+|+||||||||+++|.|.++ |++
T Consensus 36 ~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp TTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred cccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 3578888888883 6899999988 9999999999999999999999999988 999
Q ss_pred cEEEE---cC
Q 039402 675 GTLKL---CG 681 (1496)
Q Consensus 675 G~i~~---~g 681 (1496)
|+|.+ +|
T Consensus 111 G~i~vi~~d~ 120 (308)
T 1sq5_A 111 RRVELITTDG 120 (308)
T ss_dssp CCEEEEEGGG
T ss_pred CeEEEEecCC
Confidence 99988 66
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=2.9e-07 Score=106.71 Aligned_cols=112 Identities=16% Similarity=0.078 Sum_probs=74.5
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHH
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVL 716 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~ 716 (1496)
++++|+ +|++++++|++|+||||++..|+|.+.+..|+|.+.+ .++. .....+ ......
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~------~d~~--~~~~~~-----------ql~~~~ 149 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA------ADTQ--RPAARE-----------QLRLLG 149 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE------CCSS--CHHHHH-----------HHHHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec------CCcc--cHhHHH-----------HHHHhc
Confidence 567777 8999999999999999999999999998888876644 2221 111100 111111
Q ss_pred HHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecC-CCCCCHHHHHHHH
Q 039402 717 DACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDP-FSAVDAHTGSHLF 782 (1496)
Q Consensus 717 ~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep-~saLD~~~~~~i~ 782 (1496)
+..+ +..++.+. .-...+-+|.+|+++...++|++|+|+| ++++|+.....+.
T Consensus 150 ~~~~----l~~~~~~~---------~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~ 203 (295)
T 1ls1_A 150 EKVG----VPVLEVMD---------GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203 (295)
T ss_dssp HHHT----CCEEECCT---------TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHH
T ss_pred ccCC----eEEEEcCC---------CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHH
Confidence 1111 11222111 1234456789999998899999999999 9999987666553
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.45 E-value=7.4e-09 Score=115.00 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=52.7
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCCh--------
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL-------- 1316 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-------- 1316 (1496)
.++++|+...|.. ++++++ +.++|+||||||||||+++|.+++.|++|+|.++|.++...+.
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 5888998776631 466667 8999999999999999999999999999999999999844322
Q ss_pred HHHhcccEEEccc
Q 039402 1317 HDLRSRLSIIPQD 1329 (1496)
Q Consensus 1317 ~~LR~~i~iIpQd 1329 (1496)
...|..+++++|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 2346788999985
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=6.7e-08 Score=118.25 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=45.7
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 682 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~ 682 (1496)
.+|+|+||++++ ++++|+||||||||||+++|+|.++|++|+|.++|+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 65 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNT 65 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCT
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCE
Confidence 479999999999 999999999999999999999999999999988873
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.38 E-value=9.1e-08 Score=111.38 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=56.9
Q ss_pred EEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE---cCe-------------eEEEccCCcc------------
Q 039402 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL---CGT-------------KAYVAQSPWI------------ 692 (1496)
Q Consensus 641 l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~---~g~-------------~~yv~Q~~~i------------ 692 (1496)
|++.+|++++++||||||||||+++|+|..+|++|+|.+ +|+ ++|++|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456679999999999999999999999999999999998 552 5899999853
Q ss_pred -----CCCcHHHHhccCCC----CCHHHHHHHHHHhchh
Q 039402 693 -----QSGKIEDNILFGKE----MNRERYNAVLDACSLK 722 (1496)
Q Consensus 693 -----~~~ti~eNI~~g~~----~~~~~~~~v~~~~~l~ 722 (1496)
...|+ ||+.|+.. ....+..++++..+|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~ 281 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIA 281 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSC
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCC
Confidence 23477 99988531 1234567778877774
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.38 E-value=8.6e-08 Score=103.89 Aligned_cols=81 Identities=17% Similarity=0.375 Sum_probs=68.5
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhcccC-------------CCccEEEECCeeCCCCChHHHhcccEEEcccccccccc
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFRIVE-------------PAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGT 1336 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~rl~e-------------p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gT 1336 (1496)
.-+|+.++|+||||||||||+++|.+.++ |..|+ +||+|..-++.+++++.+ .|+.+++.++
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~~ 90 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFGS 90 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEEE
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhhh
Confidence 34899999999999999999999999886 77888 899999999999999876 6999999999
Q ss_pred hhhccCCCCCCcHHHHHHHHHH
Q 039402 1337 VRSNLDPLEESTDEQIWEALDK 1358 (1496)
Q Consensus 1337 IR~NLdp~~~~sd~eI~~aL~~ 1358 (1496)
+++|+ ++ .+.+.+.+++++
T Consensus 91 ~~~n~--YG-t~~~~v~~~l~~ 109 (197)
T 3ney_A 91 YQGNM--FG-TKFETVHQIHKQ 109 (197)
T ss_dssp ETTEE--EE-EEHHHHHHHHHT
T ss_pred hhcee--cc-cchhhHHHHHhc
Confidence 99995 32 245667666654
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-07 Score=120.51 Aligned_cols=156 Identities=13% Similarity=0.152 Sum_probs=102.2
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCc-cEEEECCeeCCCCChHHHhcccEEEcccc--------
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA-GQILIDGIDISLIGLHDLRSRLSIIPQDP-------- 1330 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~-G~I~IDG~dI~~i~l~~LR~~i~iIpQdp-------- 1330 (1496)
..+++++++.+++|+.++|+|++|+|||||+++|.++..+.. |.+.+++.+... ....++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~-----~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE-----NMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT-----TSCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc-----cCCcEEEEecchHHHHHHHH
Confidence 358999999999999999999999999999999999999887 889998876654 345688888754
Q ss_pred --------------ccc-ccchhhccCCCCCCc-HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1331 --------------VMF-EGTVRSNLDPLEEST-DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1331 --------------~LF-~gTIR~NLdp~~~~s-d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
..| ..+++.|+...+... ...+... + ......+-+.++..- .....+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~----~~~~~~L~G~~~~~~-~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T----GAHAGALLGDVRHDP-FQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T----TCCHHHHHCEECCCC-C----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C----CCCHHhcCceEEech-hhcCCccccccccccCc
Confidence 111 113444442100000 0000000 0 000011111111111 11234899999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHH
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQ 1427 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~ 1427 (1496)
+....++.+|+|||... +++.....+.+.|++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999987 799988888888875
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=6e-10 Score=126.40 Aligned_cols=138 Identities=15% Similarity=0.133 Sum_probs=98.2
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
.+++++...|.. +.+++++++++++| ++|+|++|+|||||++++.+... .|.|.++|.++........+++++.
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 456677766642 46899999999999 99999999999999999999875 7999999988765555556677888
Q ss_pred Eccccc-ccc-cchhhccCCCCC--C-----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1326 IPQDPV-MFE-GTVRSNLDPLEE--S-----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1326 IpQdp~-LF~-gTIR~NLdp~~~--~-----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
++|+.. .+. -++.+|+|-+.. . .+++..+.+ ..+. ..+||||+|+..+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~---------~~ll-----------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLL-----------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH---------HHHH-----------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH---------HHHH-----------HHHhCCCCCCCEEEEE
Confidence 888763 332 356677752211 0 111221211 1111 1357899999999999
Q ss_pred HccCCCEEEEEcCCC
Q 039402 1397 LLKRSKILMLDEATA 1411 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTs 1411 (1496)
+..+|++ ||++.-
T Consensus 160 ~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 160 ATNRPDI--LDPALL 172 (254)
T ss_dssp EESCGGG--SCGGGG
T ss_pred ccCCchh--CCHHHc
Confidence 9999987 788764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=7.8e-08 Score=103.15 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=63.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCC-CccEEE----------ECCeeCCCCChHHHhcccEEEcccccccccchhh
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEP-AAGQIL----------IDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRS 1339 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep-~~G~I~----------IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~ 1339 (1496)
.+|+.++|+|+||||||||++.|.+.+++ ..|.|. +||++...++.+.+++. ++|+.+++.+++++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36899999999999999999999998863 344443 57888888888888774 57899999999999
Q ss_pred ccCCCCCCcHHHHHHHHH
Q 039402 1340 NLDPLEESTDEQIWEALD 1357 (1496)
Q Consensus 1340 NLdp~~~~sd~eI~~aL~ 1357 (1496)
|.- ..+++++.++++
T Consensus 80 n~y---g~~~~~i~~~l~ 94 (180)
T 1kgd_A 80 AMY---GTKLETIRKIHE 94 (180)
T ss_dssp EEE---EEEHHHHHHHHH
T ss_pred ccc---cccHHHHHHHHH
Confidence 952 124566666665
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.32 E-value=6e-07 Score=110.60 Aligned_cols=168 Identities=13% Similarity=0.091 Sum_probs=101.1
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHH------------
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDN------------ 700 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eN------------ 700 (1496)
-+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| ..+.|++-+-.- ..+.+.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-----~~Vl~~s~E~s~--~~l~~r~~~~~~~~~~~~ 262 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN-----ENVAIFSLEMSA--QQLVMRMLCAEGNINAQN 262 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS-----CCEEEEESSSCH--HHHHHHHHHHHHTCCHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC-----CcEEEEECCCCH--HHHHHHHHHHHcCCCHHH
Confidence 3568888877999999999999999999999999987765444 134555433110 011111
Q ss_pred hccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHc--cCCCEEEEecCCCCCCHH--
Q 039402 701 ILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY--QDSDIYLFDDPFSAVDAH-- 776 (1496)
Q Consensus 701 I~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~--~~~~illLDep~saLD~~-- 776 (1496)
+..| .++++.+.++.++.. .+...+ -.+.+ ..++|++|.+ +.||++. .+|+++++|+++.-.++.
T Consensus 263 l~~g-~l~~~~~~~~~~a~~---~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~ 331 (454)
T 2r6a_A 263 LRTG-KLTPEDWGKLTMAMG---SLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRS 331 (454)
T ss_dssp HHTS-CCCHHHHHHHHHHHH---HHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC-
T ss_pred HhcC-CCCHHHHHHHHHHHH---HHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCC
Confidence 2112 234444444443321 122111 11222 3478999886 5667665 689999999999887532
Q ss_pred ------HHHHHHHHHHHHHh--CCcEEEEEcc---------C--cC--------cccc-CCEEEEEeCCeE
Q 039402 777 ------TGSHLFQEVLLGLL--SSKTVIYVTH---------Q--VE--------FLPA-ADLILVMKDGKI 819 (1496)
Q Consensus 777 ------~~~~i~~~~~~~~~--~~~tvilvtH---------~--~~--------~l~~-~d~i~~l~~G~i 819 (1496)
....+.+. ++.+. .+.+||+++| + +. .+.+ ||.|+.|..++.
T Consensus 332 ~~~~~~~i~~i~~~-Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 332 KENRQQEVSEISRS-LKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp ---CHHHHHHHHHH-HHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHHH-HHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 11223222 22222 3789999999 2 22 3443 999999986543
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-07 Score=102.94 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=41.5
Q ss_pred eEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC-------------eeEEEccCCccCCC-cHHHHhc
Q 039402 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TKAYVAQSPWIQSG-KIEDNIL 702 (1496)
Q Consensus 640 ~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g-------------~~~yv~Q~~~i~~~-ti~eNI~ 702 (1496)
|+++++|++++|+||||||||||+++|+|.++ .+.+.+ .++|++|++..+.. ++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999975 344433 24688888765543 4555544
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.27 E-value=9e-09 Score=122.80 Aligned_cols=137 Identities=17% Similarity=0.148 Sum_probs=89.1
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhh
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRS 1339 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~ 1339 (1496)
..+|+++++++++|+.++|+|++|||||||+++|.+.. +|++... +.. .+.++..++++||.+.+| .+
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~--~~~---~~~~~~~lg~~~q~~~~l----~d 223 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV--NLP---LDRLNFELGVAIDQFLVV----FE 223 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC--SSC---TTTHHHHHGGGTTCSCEE----ET
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE--ecc---chhHHHHHHHhcchhHHH----HH
Confidence 35899999999999999999999999999999999864 6777651 111 122344588899987653 34
Q ss_pred ccCCCCC---------C--cHHHHHHHHHHc---CCcHHHHhccCCccc-----ccccCCCCCCchHHHHHHHHHHHccC
Q 039402 1340 NLDPLEE---------S--TDEQIWEALDKC---QLGDEVRKKEGKLDS-----KVTENGENWSMGQRQLVCLGRVLLKR 1400 (1496)
Q Consensus 1340 NLdp~~~---------~--sd~eI~~aL~~~---~L~~~i~~lp~gLdt-----~v~e~G~nLS~GQrQll~LARALLr~ 1400 (1496)
+++.... + ++..+.+.++-. .+. .+.|+.++. .+.++-..+++|.+||+..+.+++.+
T Consensus 224 d~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~---tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~ 300 (377)
T 1svm_A 224 DVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLE---KKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPK 300 (377)
T ss_dssp TCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEEC---CSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCC
T ss_pred HHHHHHHHHhhccccCcchHHHHHHHHhcCCCeEeec---cCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCC
Confidence 4443221 0 112233333210 000 011111111 23345566899999999998888899
Q ss_pred CCEEE-EEcCCC
Q 039402 1401 SKILM-LDEATA 1411 (1496)
Q Consensus 1401 ~~ILi-LDEaTs 1411 (1496)
|++++ ||+|+.
T Consensus 301 pDLliyLd~~~~ 312 (377)
T 1svm_A 301 DYLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHHTCTH
T ss_pred CCeEEEEeCCHH
Confidence 99888 999986
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.5e-07 Score=103.13 Aligned_cols=52 Identities=31% Similarity=0.347 Sum_probs=43.9
Q ss_pred eeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccC
Q 039402 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD 1342 (1496)
Q Consensus 1265 ~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLd 1342 (1496)
|+-=++++|+.|||+|++||||||+++.|.+.++ .+.+++||++++++ +|+.
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~ 64 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIE 64 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhh
Confidence 3445688999999999999999999999999874 48899999999986 5654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.24 E-value=4.1e-07 Score=98.26 Aligned_cols=134 Identities=19% Similarity=0.210 Sum_probs=73.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCC-----------CccEEEEcCeeEEE--ccCCcc--CCCcHHHHh------ccCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPK-----------ISGTLKLCGTKAYV--AQSPWI--QSGKIEDNI------LFGKE 706 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~-----------~~G~i~~~g~~~yv--~Q~~~i--~~~ti~eNI------~~g~~ 706 (1496)
.++|+|++|||||||++.+.|...+ .+|+|.++|..--+ ...+.. +...+.... ++-.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57888888853211 111111 111111111 11111
Q ss_pred -CCHHHHHHHHHHhchhhHHHhc-cCCC-cccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 039402 707 -MNRERYNAVLDACSLKKDLEIL-SFGD-QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783 (1496)
Q Consensus 707 -~~~~~~~~v~~~~~l~~d~~~l-~~g~-~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~ 783 (1496)
.+...++.+.... +.+... +... --.++.+ ..|..-.++++..||++..+|++.++| +||+|......+++
T Consensus 111 ~~~~~s~~~~~~~~---~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~ 184 (191)
T 1oix_A 111 IAKHLTYENVERWL---KELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQ 184 (191)
T ss_dssp TTCHHHHHTHHHHH---HHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHH
T ss_pred CcCHHHHHHHHHHH---HHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHH
Confidence 1222222111100 001100 0000 0112222 122222234578899999999999999 99999999999987
Q ss_pred HHHH
Q 039402 784 EVLL 787 (1496)
Q Consensus 784 ~~~~ 787 (1496)
.+.+
T Consensus 185 ~l~~ 188 (191)
T 1oix_A 185 TILT 188 (191)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.22 E-value=4.5e-09 Score=120.94 Aligned_cols=107 Identities=18% Similarity=0.276 Sum_probs=70.9
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eEEEccCCc-cC-CCcH
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSPW-IQ-SGKI 697 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~yv~Q~~~-i~-~~ti 697 (1496)
..+++++++++++| ++|+||+|||||||+++|.|+.. .|.+.+++. +++++|.+. .. .-++
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 137 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 137 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEe
Confidence 35789999999999 99999999999999999999986 788887652 234444432 11 1244
Q ss_pred HHHh-ccCCCCC------HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 039402 698 EDNI-LFGKEMN------RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDI 763 (1496)
Q Consensus 698 ~eNI-~~g~~~~------~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 763 (1496)
.||| .++.... .+...+.+. +-...|||||+||+.+|+|+..+|++
T Consensus 138 iDeid~l~~~~~~~~~~~~~~~~~~~~--------------------~ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 138 IDEIDAVGRKRGSGVGGGNDEREQTLN--------------------QLLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EETHHHHHCC--------CHHHHHHHH--------------------HHHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred hhhhHhhhcccccccCCcchHHHHHHH--------------------HHHHHHhCCCCCCCEEEEEecCCchh
Confidence 4555 2221110 000111111 11135899999999999999999976
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.8e-07 Score=100.05 Aligned_cols=135 Identities=19% Similarity=0.236 Sum_probs=73.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc-----CC------CccEEEECCeeCC-----CCChHHHhcccEEEccccc--c--cc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV-----EP------AAGQILIDGIDIS-----LIGLHDLRSRLSIIPQDPV--M--FE 1334 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~-----ep------~~G~I~IDG~dI~-----~i~l~~LR~~i~iIpQdp~--L--F~ 1334 (1496)
|++|+|++|||||||++.|.+.. .| ..|+|.+||.++. .-+.+..|+......|+.. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 79999999999999999999974 23 3689999997652 2233334433333333321 1 22
Q ss_pred cchhhccCCCCCCcHHHH---HHHHHHc-CCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCC
Q 039402 1335 GTVRSNLDPLEESTDEQI---WEALDKC-QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEAT 1410 (1496)
Q Consensus 1335 gTIR~NLdp~~~~sd~eI---~~aL~~~-~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaT 1410 (1496)
.+-+ .+-+++ .+.+... .-..-+.-.-.+.|-. + -...+ ...||++.++|+++++| |
T Consensus 87 ~~~~--------~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~--~-~~~~~------~~~a~~l~~~~~~~~~d--~ 147 (199)
T 2f9l_A 87 IAKH--------LTYENVERWLKELRDHADSNIVIMLVGNKSDLR--H-LRAVP------TDEARAFAEKNNLSFIE--T 147 (199)
T ss_dssp TTCH--------HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG--G-GCCSC------HHHHHHHHHHTTCEEEE--C
T ss_pred CcCH--------HHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc--c-ccCcC------HHHHHHHHHHcCCeEEE--E
Confidence 1111 011111 1112111 0000000001112210 0 01112 34589999999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 039402 1411 ASVDTATDNLIQQTLRQH 1428 (1496)
Q Consensus 1411 sslD~~Td~~Iq~~I~~~ 1428 (1496)
|++|...-..+.+.|.+.
T Consensus 148 Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 148 SALDSTNVEEAFKNILTE 165 (199)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999998877776666543
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.20 E-value=3e-06 Score=100.45 Aligned_cols=144 Identities=21% Similarity=0.312 Sum_probs=83.2
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhch
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSL 721 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l 721 (1496)
-+++|+++.|.||+|||||||+..++....+.. +.+.|+.-+.. .+.. + .+..+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g------~~vlyi~~E~~---------------~~~~-~---a~~lG~ 111 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAG------GIAAFIDAEHA---------------LDPE-Y---AKKLGV 111 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT------CCEEEEESSCC---------------CCHH-H---HHHTTC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC------CeEEEEECCCC---------------cCHH-H---HHHcCC
Confidence 478999999999999999999988887665433 34556654421 1111 1 111221
Q ss_pred hhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC--CCEEEEecCCCCC----------CHH---HHHHH---HH
Q 039402 722 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD--SDIYLFDDPFSAV----------DAH---TGSHL---FQ 783 (1496)
Q Consensus 722 ~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~--~~illLDep~saL----------D~~---~~~~i---~~ 783 (1496)
. .+.+. +-. ..++ .|-+.+++++..+ |+++++|+|++.+ |++ ..+.+ +.
T Consensus 112 ~--~~~l~------i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~ 178 (349)
T 2zr9_A 112 D--TDSLL------VSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178 (349)
T ss_dssp C--GGGCE------EEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHH
T ss_pred C--HHHeE------Eec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHH
Confidence 1 11110 111 1122 3446678888754 9999999999998 331 11112 22
Q ss_pred HHHHHH-hCCcEEEEEccCcCc----------------cc-cCCEEEEEeCCeEEEec
Q 039402 784 EVLLGL-LSSKTVIYVTHQVEF----------------LP-AADLILVMKDGKITQAG 823 (1496)
Q Consensus 784 ~~~~~~-~~~~tvilvtH~~~~----------------l~-~~d~i~~l~~G~i~~~G 823 (1496)
.+.... ..+.|||+++|-..- +. .||.++.++.+++...|
T Consensus 179 ~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 179 KMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp HHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred HHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 222111 238899999996531 33 38888888877665444
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=6.9e-09 Score=117.63 Aligned_cols=112 Identities=18% Similarity=0.283 Sum_probs=71.6
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eEEEccCCc-cC-CCcH
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSPW-IQ-SGKI 697 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~yv~Q~~~-i~-~~ti 697 (1496)
..+++++++++++| ++|+||+|||||||+++|.|+.. .|.+.++|. +.+++|.+. .. .-++
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 113 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 113 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEE
Confidence 35789999999999 99999999999999999999886 688887652 123444321 11 1234
Q ss_pred HHHh-ccCCCCC------HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCC
Q 039402 698 EDNI-LFGKEMN------RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPF 770 (1496)
Q Consensus 698 ~eNI-~~g~~~~------~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~ 770 (1496)
.||| .++.... .+...+.+ .+-...|||||+||+.+|+|+..+|++ +|+++
T Consensus 114 ~Deid~l~~~~~~~~~~~~~~~~~~~--------------------~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 114 IDEIDAVGRKRGSGVGGGNDEREQTL--------------------NQLLVEMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp EETHHHHHC---------CHHHHHHH--------------------HHHHHHHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred ehhhhhhhcccCccccccchHHHHHH--------------------HHHHHHHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 4444 2221100 00001111 111235889999999999999999876 45443
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.15 E-value=3e-07 Score=102.62 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=23.3
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHh-cCCCC
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-GEVPK 672 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~il-G~~~~ 672 (1496)
....+++||++++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35678999999999999999999999999999999 99843
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.12 E-value=4.4e-07 Score=115.80 Aligned_cols=143 Identities=12% Similarity=0.086 Sum_probs=88.9
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCc-cEEEEcC--------eeEEEccCC-------------
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS-GTLKLCG--------TKAYVAQSP------------- 690 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~-G~i~~~g--------~~~yv~Q~~------------- 690 (1496)
..+++++++.+++|+.++|+||+|+|||||+++|.|.+++.. |.+.+++ .++|+||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~ 126 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKAK 126 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhhc
Confidence 468899999999999999999999999999999999999887 6776644 356776643
Q ss_pred ---------ccC-CCcHHHHhccCCCCCHHHHHHHH--HHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 039402 691 ---------WIQ-SGKIEDNILFGKEMNRERYNAVL--DACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 758 (1496)
Q Consensus 691 ---------~i~-~~ti~eNI~~g~~~~~~~~~~v~--~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 758 (1496)
|.+ ..++.+|+..+..-.... .++ ......+-+..... -......+|+|++|++..++...
T Consensus 127 ~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~--~~v~~~~~~~~~L~G~~~~-----~~~~~g~~~~g~~~~i~~g~~~~ 199 (604)
T 3k1j_A 127 SQESVKSSNMRLKSTVLVPKLLVDNCGRTKA--PFIDATGAHAGALLGDVRH-----DPFQSGGLGTPAHERVEPGMIHR 199 (604)
T ss_dssp HHTCC-----------CCCEEEECCTTCSSC--CEEECTTCCHHHHHCEECC-----CCC----CCCCGGGGEECCHHHH
T ss_pred cchhhhhhcccccccccccceeeccccCCCC--CEEEcCCCCHHhcCceEEe-----chhhcCCccccccccccCceeee
Confidence 221 123333443321100000 000 00000000000000 01222459999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHH
Q 039402 759 QDSDIYLFDDPFSAVDAHTGSHLFQ 783 (1496)
Q Consensus 759 ~~~~illLDep~saLD~~~~~~i~~ 783 (1496)
.++.+++|||+-. |++.....+.+
T Consensus 200 a~~gvL~LDEi~~-l~~~~q~~Ll~ 223 (604)
T 3k1j_A 200 AHKGVLFIDEIAT-LSLKMQQSLLT 223 (604)
T ss_dssp TTTSEEEETTGGG-SCHHHHHHHHH
T ss_pred cCCCEEEEechhh-CCHHHHHHHHH
Confidence 9999999999987 78887666643
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.3e-08 Score=118.20 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=54.9
Q ss_pred CCceeeeeEEEeCC-------cEEEEEecCCCcHHHHHHHHhcCC----CCCccEEEEc-------------CeeEEEcc
Q 039402 633 NPTLKDINLKVFHG-------MRVAVCGTVGSGKSSLLSCILGEV----PKISGTLKLC-------------GTKAYVAQ 688 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G-------~~~~ivG~~GsGKSTLl~~ilG~~----~~~~G~i~~~-------------g~~~yv~Q 688 (1496)
+.+++++++.+++| +.++++||+|+|||||+++|+|++ .+++|.+..+ +.+.|++|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 45788999999877 889999999999999999999998 6677766432 34788888
Q ss_pred CCccCCCcHHHHhc
Q 039402 689 SPWIQSGKIEDNIL 702 (1496)
Q Consensus 689 ~~~i~~~ti~eNI~ 702 (1496)
...+.. ++.|++.
T Consensus 111 ~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 111 IHRLNK-AVEELLY 123 (334)
T ss_dssp GGGCCH-HHHHHHH
T ss_pred hhhcCH-HHHHHHH
Confidence 776654 6777664
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.05 E-value=3.1e-06 Score=100.88 Aligned_cols=138 Identities=21% Similarity=0.193 Sum_probs=82.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC-----------CCccEEEECCeeCCCCChHHHhcccEEEcccccc----cccchhh
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVE-----------PAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVM----FEGTVRS 1339 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~e-----------p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~L----F~gTIR~ 1339 (1496)
+|+|||++|||||||++.|.+... |..|+|.++|.++. +....|++.|.|.- |..|+.+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999765 67899999997652 22345666654431 2223221
Q ss_pred -----cc----CCCCCC--cHHH---HHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH----HHH-ccC
Q 039402 1340 -----NL----DPLEES--TDEQ---IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG----RVL-LKR 1400 (1496)
Q Consensus 1340 -----NL----dp~~~~--sd~e---I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA----RAL-Lr~ 1400 (1496)
++ |..+.. .+++ +.+.|+..++.+ .| --.|...-..+|+|++|++.++ +++ ..+
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~----~p---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG----KP---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS----CC---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC----CC---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 11 111111 1222 234444443321 11 1122334445788888888877 666 444
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHhc
Q 039402 1401 SKILMLDEATASVDTATDNLIQQTLRQHF 1429 (1496)
Q Consensus 1401 ~~ILiLDEaTsslD~~Td~~Iq~~I~~~f 1429 (1496)
+++ +|||++|.+.-..+.+.|.+..
T Consensus 328 ~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 328 FDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred CcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 454 8999999988877777776643
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.04 E-value=9.2e-07 Score=96.38 Aligned_cols=85 Identities=12% Similarity=0.076 Sum_probs=52.2
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccc-----------cccc
Q 039402 1268 CTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVM-----------FEGT 1336 (1496)
Q Consensus 1268 ~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~L-----------F~gT 1336 (1496)
++|++|+.++|+|++||||||+++.|.+++.|..| +.+ +....... ...+.++++++|++.. +..+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 46889999999999999999999999999977655 222 22222211 1123457888887643 3344
Q ss_pred hhhccCCCCCCcHHHHHHHHHH
Q 039402 1337 VRSNLDPLEESTDEQIWEALDK 1358 (1496)
Q Consensus 1337 IR~NLdp~~~~sd~eI~~aL~~ 1358 (1496)
++.|+. ....+++.++++.
T Consensus 78 ~~~~~~---g~~~~~i~~~l~~ 96 (207)
T 2j41_A 78 YVGNYY---GTPVQYVKDTMDE 96 (207)
T ss_dssp ETTEEE---EEEHHHHHHHHHT
T ss_pred ECCeec---CCCHHHHHHHHHc
Confidence 444431 1245667666653
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.5e-06 Score=92.99 Aligned_cols=38 Identities=32% Similarity=0.398 Sum_probs=34.3
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 675 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G 675 (1496)
+++++++.+| +++|+||||||||||+.+|.+.+.+..|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 6889999999 9999999999999999999988776555
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.5e-07 Score=104.33 Aligned_cols=115 Identities=13% Similarity=0.159 Sum_probs=77.3
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCC---CCCccEEEE--------cCe--------------eEEEccCC------ccC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEV---PKISGTLKL--------CGT--------------KAYVAQSP------WIQ 693 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~---~~~~G~i~~--------~g~--------------~~yv~Q~~------~i~ 693 (1496)
.+.+++|+|++||||||+.+.|.+.+ .++.|.+.. +|. +++++|++ .+.
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35689999999999999999998876 677787765 342 35666654 223
Q ss_pred CCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccc-cCCCCCCChHHHHHHHHHHHHccCCCEEEEecCC
Q 039402 694 SGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVI-GERGINLSGGQKQRIQIARALYQDSDIYLFDDPF 770 (1496)
Q Consensus 694 ~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~i-g~~g~~LSGGQkqRv~LARAl~~~~~illLDep~ 770 (1496)
..++.+++. .+...+++..+...+.+.....+..+.+ .++|.-++|+ .++++++.++++.++.|+.
T Consensus 84 ~~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 84 GEDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp TEECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred CeeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 445555542 3455566667777666655433333333 3456778886 4666788899999998874
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.02 E-value=8.1e-06 Score=100.22 Aligned_cols=115 Identities=19% Similarity=0.250 Sum_probs=76.5
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhh
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRS 1339 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~ 1339 (1496)
|..++++++.+++| +.|+|++|+|||||++++.+.... |+ +.-+..+
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------------~f-~~is~~~ 84 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------------PF-FHISGSD 84 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------------CE-EEEEGGG
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------------Ce-eeCCHHH
Confidence 34677888888887 999999999999999999984310 00 0001111
Q ss_pred ccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCC--------
Q 039402 1340 NLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATA-------- 1411 (1496)
Q Consensus 1340 NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTs-------- 1411 (1496)
....+ ++ .+++++|-.+++|....|.||++||+.+
T Consensus 85 ~~~~~-------------------------------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 85 FVELF-------------------------------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp TTTCC-------------------------------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----
T ss_pred HHHHH-------------------------------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc
Confidence 11100 11 2578888889999989999999999943
Q ss_pred --CCCHHHHHHHHHHHHHh-----cCCcEEEEEccCcchh
Q 039402 1412 --SVDTATDNLIQQTLRQH-----FSDCTVLTIAHRITSV 1444 (1496)
Q Consensus 1412 --slD~~Td~~Iq~~I~~~-----f~~~TVI~IAHRl~ti 1444 (1496)
+.|.+.++.+.+.+.+. -.+..||..||+.+.+
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 56666666666666543 1356889999998654
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.01 E-value=2.9e-08 Score=118.46 Aligned_cols=128 Identities=13% Similarity=0.113 Sum_probs=81.8
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE-c----C---eeEEEccCCccCCCcHHHHhccCC
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL-C----G---TKAYVAQSPWIQSGKIEDNILFGK 705 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~-~----g---~~~yv~Q~~~i~~~ti~eNI~~g~ 705 (1496)
.+++++++.+++|+.++|+||+|||||||+++|.|. .+|.+.. + + .+++++|.+.+ +.|++.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~----l~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLV----VFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCE----EETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHH----HHHHHHHHH
Confidence 578999999999999999999999999999999985 4677665 2 1 24566666532 233333322
Q ss_pred C----C---CH----HHHHHHHHH---hchhh----HH-HhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE-
Q 039402 706 E----M---NR----ERYNAVLDA---CSLKK----DL-EILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYL- 765 (1496)
Q Consensus 706 ~----~---~~----~~~~~v~~~---~~l~~----d~-~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ill- 765 (1496)
. . +. ..+...++. ..+.. .+ ..++.| .+.++...+++|++||+..+.+++.+|++++
T Consensus 230 ~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg---~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliy 306 (377)
T 1svm_A 230 GESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKTLQARFVKQIDFRPKDYLKHC 306 (377)
T ss_dssp TTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCE---EEEECSCCCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred HHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCc---ccChhHHhhcHHHHHHHhhhhccCCCCCeEEE
Confidence 1 0 10 011111110 00000 00 011111 2345667799999999999988999999988
Q ss_pred EecCCC
Q 039402 766 FDDPFS 771 (1496)
Q Consensus 766 LDep~s 771 (1496)
||+|+.
T Consensus 307 Ld~~~~ 312 (377)
T 1svm_A 307 LERSEF 312 (377)
T ss_dssp HHTCTH
T ss_pred EeCCHH
Confidence 999986
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.00 E-value=6.4e-07 Score=101.05 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=36.0
Q ss_pred eEEEEeE-EeEeCCCCCccceeeeEEeeC---CcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1245 KIDLLDL-QVRYAPQMPLVLQGISCTFPG---GEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1245 ~I~f~nv-s~~Y~~~~~~vLk~iS~~I~~---GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.++++|+ +++|. +...+|+|+||+|++ |++|+|+|++||||||+.+.|.+.+
T Consensus 17 ~l~~~~~~~~~~~-~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD-EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec-CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6999999 99993 335699999999999 9999999999999999999999865
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.6e-06 Score=92.67 Aligned_cols=98 Identities=20% Similarity=0.323 Sum_probs=64.5
Q ss_pred eeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCe--eCCCCCh----HHHhcccEEEcccccc-c--c
Q 039402 1264 QGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI--DISLIGL----HDLRSRLSIIPQDPVM-F--E 1334 (1496)
Q Consensus 1264 k~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~--dI~~i~l----~~LR~~i~iIpQdp~L-F--~ 1334 (1496)
+++++.+.+| .++|+|+||||||||+.+|..+..+..|+..-.+. ++-.-+. ...+..+.++.|+|.- | .
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6889999999 99999999999999999999988887765433221 1111110 0235679999998631 1 1
Q ss_pred ---cchhhccCCC---------CCCcHHHHHHHHHHcCCc
Q 039402 1335 ---GTVRSNLDPL---------EESTDEQIWEALDKCQLG 1362 (1496)
Q Consensus 1335 ---gTIR~NLdp~---------~~~sd~eI~~aL~~~~L~ 1362 (1496)
-+|+..+... ...+.+++.+.++.+++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCC
Confidence 1333333211 123578888889888775
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.99 E-value=1e-06 Score=96.02 Aligned_cols=61 Identities=16% Similarity=0.124 Sum_probs=45.4
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH-HhcccEEEccccccc
Q 039402 1267 SCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-LRSRLSIIPQDPVMF 1333 (1496)
Q Consensus 1267 S~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i~iIpQdp~LF 1333 (1496)
.++-++|+.++|+|++||||||++++|.+.+ |.+.+||.++.. ... .+.+.++++|++..+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcccc
Confidence 4667899999999999999999999999987 999999988752 222 233578888886544
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1e-06 Score=108.56 Aligned_cols=157 Identities=11% Similarity=0.109 Sum_probs=83.5
Q ss_pred eeeEEEeCCcEEEEEecCCCcHHHHHHHHhc--CCCCCccEEEEcCee--EE----EccCCccCCCcHHHHhccCCCCCH
Q 039402 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTK--AY----VAQSPWIQSGKIEDNILFGKEMNR 709 (1496)
Q Consensus 638 ~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG--~~~~~~G~i~~~g~~--~y----v~Q~~~i~~~ti~eNI~~g~~~~~ 709 (1496)
.+++++.+|..+.|.|++||||||++++|+. .+..+.|++.+.+.. +. ...-|++.. ++.+ |.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~-~Vvt--------d~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLT-EVVT--------DM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSS-SCBC--------SH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccc-eeec--------CH
Confidence 4778889999999999999999999999886 445555666543211 00 001122211 1111 12
Q ss_pred HHHHHHHHHhc--hhhHHHhcc-CCCcccccC---CCCCCChHHHHHH----------HHHHHHccCCC-EEEEecCCCC
Q 039402 710 ERYNAVLDACS--LKKDLEILS-FGDQTVIGE---RGINLSGGQKQRI----------QIARALYQDSD-IYLFDDPFSA 772 (1496)
Q Consensus 710 ~~~~~v~~~~~--l~~d~~~l~-~g~~t~ig~---~g~~LSGGQkqRv----------~LARAl~~~~~-illLDep~sa 772 (1496)
+...++++.+. +++--+.+. .|....-+- ....+||||+||. .+|+++...|. ++++||+.+.
T Consensus 230 ~~a~~~L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~l 309 (512)
T 2ius_A 230 KDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADL 309 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHH
Confidence 22122222110 000011110 111100000 1124788888753 35677778898 8999999998
Q ss_pred CCHHH--HHHHHHHHHH-HHhCCcEEEEEccCcC
Q 039402 773 VDAHT--GSHLFQEVLL-GLLSSKTVIYVTHQVE 803 (1496)
Q Consensus 773 LD~~~--~~~i~~~~~~-~~~~~~tvilvtH~~~ 803 (1496)
+|... ...++..+.+ +...|.++|++||+++
T Consensus 310 l~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 310 MMTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 87432 1222222222 2223789999999987
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.97 E-value=1.6e-06 Score=101.35 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=56.4
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCCh----HHH-----hcccEEE-ccc
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL----HDL-----RSRLSII-PQD 1329 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l----~~L-----R~~i~iI-pQd 1329 (1496)
++++++|++++|+.++|+|++|+||||++..|.+.+.+.+|+|.+.+.|+..... ..+ |..+.++ +|+
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 4578899999999999999999999999999999999999999999999865542 344 5668888 554
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.94 E-value=7.9e-06 Score=97.35 Aligned_cols=134 Identities=15% Similarity=0.160 Sum_probs=77.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCC-----------CCccEEEEcCeeEEEccCCcc-C----------CCcH-----HHH
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVP-----------KISGTLKLCGTKAYVAQSPWI-Q----------SGKI-----EDN 700 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~-----------~~~G~i~~~g~~~yv~Q~~~i-~----------~~ti-----~eN 700 (1496)
.++|+|++|+|||||++.|.|... ++.|.+.++|..-.+.+.|.+ . ..|. .|+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~ 260 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDA 260 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCE
Confidence 499999999999999999999875 567899998854333333322 1 1111 123
Q ss_pred hccCCCCC-HH-HHHHHHHHhchhhHHHhcc--CCCcccccCCCCCCChHHHHHHHHH----HHH-ccCCCEEEEecCCC
Q 039402 701 ILFGKEMN-RE-RYNAVLDACSLKKDLEILS--FGDQTVIGERGINLSGGQKQRIQIA----RAL-YQDSDIYLFDDPFS 771 (1496)
Q Consensus 701 I~~g~~~~-~~-~~~~v~~~~~l~~d~~~l~--~g~~t~ig~~g~~LSGGQkqRv~LA----RAl-~~~~~illLDep~s 771 (1496)
+++-.+.. .. ...+.++. ..+.++.+. ....-.++.+...+|+|++||+.++ +++ ..++++ +|+|
T Consensus 261 il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~S 334 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPIS 334 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECB
T ss_pred EEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEE
Confidence 33321111 11 01111111 011122221 1112344666677898999988887 666 444454 7999
Q ss_pred CCCHHHHHHHHHHHHH
Q 039402 772 AVDAHTGSHLFQEVLL 787 (1496)
Q Consensus 772 aLD~~~~~~i~~~~~~ 787 (1496)
|+|......+++.+..
T Consensus 335 A~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQ 350 (364)
T ss_dssp TTTTBSHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 9999988888876544
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.3e-05 Score=86.76 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=31.5
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 039402 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789 (1496)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~ 789 (1496)
...||++..+|++.++| +||+|......+++.+.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45699999999999999 99999999999988765543
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.2e-05 Score=98.81 Aligned_cols=114 Identities=19% Similarity=0.285 Sum_probs=73.3
Q ss_pred ceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHH
Q 039402 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNA 714 (1496)
Q Consensus 635 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~ 714 (1496)
.++++++.+++| +.|+||+|+|||||++++.++.... .-++. ..+.+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~---------f~~is---------~~~~~------------- 86 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP---------FFHIS---------GSDFV------------- 86 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC---------EEEEE---------GGGTT-------------
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC---------eeeCC---------HHHHH-------------
Confidence 566777778888 8899999999999999999965210 11110 00000
Q ss_pred HHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC----------CCCHHHHHHHHHH
Q 039402 715 VLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS----------AVDAHTGSHLFQE 784 (1496)
Q Consensus 715 v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s----------aLD~~~~~~i~~~ 784 (1496)
+. .+| .|++++|-.+++|....|.|+++||+-+ +.|....+ ....
T Consensus 87 -----------~~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~-~l~~ 141 (476)
T 2ce7_A 87 -----------EL-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQ-TLNQ 141 (476)
T ss_dssp -----------TC-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHH-HHHH
T ss_pred -----------HH-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHH-HHHH
Confidence 00 011 2788999999999999999999999943 55554433 3334
Q ss_pred HHHHH-----hCCcEEEEEccCcCccc
Q 039402 785 VLLGL-----LSSKTVIYVTHQVEFLP 806 (1496)
Q Consensus 785 ~~~~~-----~~~~tvilvtH~~~~l~ 806 (1496)
++..+ ..+..||.+||+.+.++
T Consensus 142 LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 142 LLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HHHHHhccCCCCCEEEEEecCChhhhc
Confidence 44322 23568888999986543
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=5.4e-06 Score=98.93 Aligned_cols=46 Identities=20% Similarity=0.389 Sum_probs=35.3
Q ss_pred ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc--ccCCCccEEEECCe
Q 039402 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR--IVEPAAGQILIDGI 1309 (1496)
Q Consensus 1261 ~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~r--l~ep~~G~I~IDG~ 1309 (1496)
.+|++++++++ +|+|||++|||||||+++|.| +.++.+|.++-.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 47999999998 999999999999999999999 66777776654443
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=7.8e-07 Score=96.93 Aligned_cols=51 Identities=25% Similarity=0.328 Sum_probs=45.0
Q ss_pred ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEE--EECCeeCC
Q 039402 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI--LIDGIDIS 1312 (1496)
Q Consensus 1261 ~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I--~IDG~dI~ 1312 (1496)
.+.+..++..++|+.|+|+|++||||||++++|.+.+. ..|.+ ++||.++.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 36678888889999999999999999999999999987 78988 99986553
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=2.2e-05 Score=93.53 Aligned_cols=46 Identities=33% Similarity=0.393 Sum_probs=35.3
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhc--CCCCCccEEEEcC
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCG 681 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG--~~~~~~G~i~~~g 681 (1496)
..+|++++++++ .++|+|++|||||||+++|+| .+++.+|.++..+
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 357899999998 899999999999999999999 5677777665443
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.86 E-value=6.6e-07 Score=110.51 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=93.2
Q ss_pred EEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEE
Q 039402 1247 DLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSII 1326 (1496)
Q Consensus 1247 ~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iI 1326 (1496)
+++++...|.. +.+++++++++++| +.|+|++|+|||||++++.+... .|.|.++|.++........++++..+
T Consensus 42 ~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 42 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 45555554532 45899999999999 99999999999999999999875 78999999998776555666777778
Q ss_pred ccccc-cccc-chhhccCCCCC-------CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1327 PQDPV-MFEG-TVRSNLDPLEE-------STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1327 pQdp~-LF~g-TIR~NLdp~~~-------~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+|+.. ...+ .+-+++|-... ...++..+.+.+ .+. .+||||+|+..+++|.
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~-----LL~---------------~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ-----LLV---------------EMDGFEKDTAIVVMAA 175 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH-----HHH---------------HGGGCCSSCCCEEEEC
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH-----HHH---------------HhcccccCccEEEEEe
Confidence 88764 2333 55677763321 012222222211 111 1466777777777777
Q ss_pred ccCCCEEEEEcCCC
Q 039402 1398 LKRSKILMLDEATA 1411 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTs 1411 (1496)
..+|++ ||||.-
T Consensus 176 tn~p~~--LD~aLl 187 (499)
T 2dhr_A 176 TNRPDI--LDPALL 187 (499)
T ss_dssp CSCGGG--SCTTTS
T ss_pred cCChhh--cCcccc
Confidence 777776 777764
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.86 E-value=5.7e-06 Score=108.12 Aligned_cols=145 Identities=15% Similarity=0.102 Sum_probs=85.5
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-eEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhch
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-KAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSL 721 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l 721 (1496)
+..|+.++|+||+||||||++..++++..+..| +|. +.++ | |. .... .+.++++.+..+.
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g~~ilvl-~-P~---r~La----------~q~~~~l~~~~~~ 166 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----ENTQVACT-Q-PR---RVAA----------MSVAQRVAEEMDV 166 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GTCEEEEE-E-SC---HHHH----------HHHHHHHHHHTTC
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccccC----CCceEEec-C-ch---HHHH----------HHHHHHHHHHhCC
Confidence 567899999999999999999988877655443 122 2222 1 10 0000 0111111111111
Q ss_pred hh--HHH-hccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHHHHHhCCcEEEE
Q 039402 722 KK--DLE-ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS-AVDAHTGSHLFQEVLLGLLSSKTVIY 797 (1496)
Q Consensus 722 ~~--d~~-~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s-aLD~~~~~~i~~~~~~~~~~~~tvil 797 (1496)
.. ... .....+.+.-+.+..-+|+|+.+|..++++++.+++++++|||.. ++|.+....+.+.+.......+++++
T Consensus 167 ~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~ 246 (773)
T 2xau_A 167 KLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIM 246 (773)
T ss_dssp CBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred chhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEE
Confidence 00 000 000001111123456789999999999999999999999999997 89987665555554432223467777
Q ss_pred -EccCcCccc
Q 039402 798 -VTHQVEFLP 806 (1496)
Q Consensus 798 -vtH~~~~l~ 806 (1496)
+||+.+.+.
T Consensus 247 SAT~~~~~l~ 256 (773)
T 2xau_A 247 SATLDAEKFQ 256 (773)
T ss_dssp ESCSCCHHHH
T ss_pred eccccHHHHH
Confidence 599876543
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.80 E-value=2.4e-05 Score=93.20 Aligned_cols=124 Identities=18% Similarity=0.211 Sum_probs=79.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHH
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIW 1353 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~ 1353 (1496)
-++++||.+|+|||||++.|.+.. + .+++.+..+.+ ..++.++++..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~-~-----~~~~~~~~t~~-----~~~~~~~~~~~---------------------- 214 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK-P-----EIASYPFTTRG-----INVGQFEDGYF---------------------- 214 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC-C-----EEECCTTCSSC-----EEEEEEEETTE----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-C-----ccCCCCCeeec-----eeEEEEEecCc----------------------
Confidence 489999999999999999998854 2 12222222211 11233332211
Q ss_pred HHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEE-cCCCCCCHHHHHHHHHHHHHhcCCc
Q 039402 1354 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLD-EATASVDTATDNLIQQTLRQHFSDC 1432 (1496)
Q Consensus 1354 ~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLD-EaTsslD~~Td~~Iq~~I~~~f~~~ 1432 (1496)
...+. ..|+-.+. ....+|+|++|.+. +.+...++-++|+| ++++++|.+....+.+.+.+.+.++
T Consensus 215 ----~~~l~----Dt~G~~~~----~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~ 281 (357)
T 2e87_A 215 ----RYQII----DTPGLLDR----PISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDL 281 (357)
T ss_dssp ----EEEEE----ECTTTSSS----CSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTS
T ss_pred ----eEEEE----eCCCcccc----chhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCC
Confidence 01111 12222221 22357899999876 55555666789999 9999999988887878887777688
Q ss_pred EEEEEc--cCcch
Q 039402 1433 TVLTIA--HRITS 1443 (1496)
Q Consensus 1433 TVI~IA--HRl~t 1443 (1496)
.+|+|. |++..
T Consensus 282 piilV~NK~Dl~~ 294 (357)
T 2e87_A 282 PFLVVINKIDVAD 294 (357)
T ss_dssp CEEEEECCTTTCC
T ss_pred CEEEEEECcccCC
Confidence 899998 77643
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=1.6e-05 Score=93.47 Aligned_cols=41 Identities=29% Similarity=0.331 Sum_probs=31.8
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhccc-CC------CccEEEECCe
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIV-EP------AAGQILIDGI 1309 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~-ep------~~G~I~IDG~ 1309 (1496)
-+++|+.+.|.|++|||||||+..+..-. .| ..+.++||..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 58999999999999999999998887643 33 2345666653
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.80 E-value=2.3e-05 Score=91.96 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=72.0
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHH
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYN 713 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~ 713 (1496)
+-|+.+.--+.+|+++.|.|++|+|||||+.-++....... +.++|++ .++..+.+.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g------~~Vl~fS-----------------lEms~~ql~ 90 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD------RGVAVFS-----------------LEMSAEQLA 90 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT------CEEEEEE-----------------SSSCHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC------CeEEEEe-----------------CCCCHHHHH
Confidence 45666555689999999999999999999988876544322 2344433 344444443
Q ss_pred HHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 039402 714 AVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVD 774 (1496)
Q Consensus 714 ~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD 774 (1496)
.-+-+....-++..+.. ..||+++++|+..|...+.++++++.|+|...+|
T Consensus 91 ~Rlls~~~~v~~~~l~~----------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 91 LRALSDLTSINMHDLES----------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp HHHHHHHHCCCHHHHHH----------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred HHHHHHhhCCCHHHHhc----------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 32222111112222211 2699999999999999999999999999865544
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.78 E-value=5.4e-06 Score=90.94 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=58.7
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCC-CccEEE----------ECCeeCCCCChHHHhcccEEEcccccccccchhh
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEP-AAGQIL----------IDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRS 1339 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep-~~G~I~----------IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~ 1339 (1496)
++|+.++|+||||||||||++.|.+.++| ..+.+. .||++...++...+++.+ .|+.+++.+++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999976 333332 467676667777777665 6777888888777
Q ss_pred ccCCCCCCcHHHHHHHHH
Q 039402 1340 NLDPLEESTDEQIWEALD 1357 (1496)
Q Consensus 1340 NLdp~~~~sd~eI~~aL~ 1357 (1496)
|.- ..+.+.+.++++
T Consensus 83 ~~y---g~~~~~i~~~l~ 97 (208)
T 3tau_A 83 NYY---GTPLEYVEEKLA 97 (208)
T ss_dssp EEE---EEEHHHHHHHHH
T ss_pred ccC---CCcHHHHHHHHH
Confidence 742 123455555554
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.3e-06 Score=97.37 Aligned_cols=65 Identities=17% Similarity=0.086 Sum_probs=51.7
Q ss_pred eeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC------ChHH----HhcccEEEcccccccc
Q 039402 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI------GLHD----LRSRLSIIPQDPVMFE 1334 (1496)
Q Consensus 1266 iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i------~l~~----LR~~i~iIpQdp~LF~ 1334 (1496)
-+++.++|+.|+|+|++||||||++++|.++ +|+|.++|.|+... .+.+ .++++++++|++.++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3456689999999999999999999999998 79999999886432 2221 2567899999987764
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.77 E-value=3.1e-05 Score=91.49 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=46.6
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEE-EECCeeCCCCChHHHhcccEEEccccc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI-LIDGIDISLIGLHDLRSRLSIIPQDPV 1331 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I-~IDG~dI~~i~l~~LR~~i~iIpQdp~ 1331 (1496)
-+++|+.+.|.|++|||||||+..+.+...+.+|.+ +||+.+... ....+++++.+|+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLL 117 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhh
Confidence 478999999999999999999999999888777864 777754332 225567787776644
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.76 E-value=3.1e-05 Score=93.54 Aligned_cols=160 Identities=18% Similarity=0.157 Sum_probs=96.2
Q ss_pred EEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH-HhcccEEE
Q 039402 1248 LLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-LRSRLSII 1326 (1496)
Q Consensus 1248 f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i~iI 1326 (1496)
.++++..|.+.. ++++++ +|+.++++|++||||||++..|.+.+.+.+|++.+.+.|+.....++ |+..
T Consensus 79 ~~~L~~~~~~~~----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~---- 148 (425)
T 2ffh_A 79 YEALKEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL---- 148 (425)
T ss_dssp HHHHHHHTTSSC----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH----
T ss_pred HHHHHHHhCCCc----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh----
Confidence 344555564331 567777 89999999999999999999999999999999999998887654433 2210
Q ss_pred cccccccccchhhccCCCC---CCcHHHH-HHHHHHcCCcHHHHhccCCcccccccCCCCCCc---hHHHHHHHHHHHcc
Q 039402 1327 PQDPVMFEGTVRSNLDPLE---ESTDEQI-WEALDKCQLGDEVRKKEGKLDSKVTENGENWSM---GQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1327 pQdp~LF~gTIR~NLdp~~---~~sd~eI-~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~---GQrQll~LARALLr 1399 (1496)
.-+.|++.+. ..+..++ .++++.+ ..+++|..+-+.+..++. ...++..+++++--
T Consensus 149 ---------~~~~gv~v~~~~~~~~p~~i~~~~l~~~--------~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~p 211 (425)
T 2ffh_A 149 ---------GEKVGVPVLEVMDGESPESIRRRVEEKA--------RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP 211 (425)
T ss_dssp ---------HHHHTCCEEECCTTCCHHHHHHHHHHHH--------HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCC
T ss_pred ---------cccCCccEEecCCCCCHHHHHHHHHHHH--------HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCC
Confidence 0122343211 1223344 3333322 125677666554444432 35677788888865
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcc
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAH 1439 (1496)
.+-+|++| |+++.|... .+ +..++. -+.|-++++|
T Consensus 212 d~vlLVvD-a~tgq~av~--~a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 212 DEVLLVLD-AMTGQEALS--VA-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp SEEEEEEE-GGGTTHHHH--HH-HHHHHH-TCCCEEEEES
T ss_pred ceEEEEEe-ccchHHHHH--HH-HHHHhc-CCceEEEEeC
Confidence 55678888 455544432 22 223332 2345566654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.71 E-value=2.7e-06 Score=96.30 Aligned_cols=59 Identities=17% Similarity=0.111 Sum_probs=47.6
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHh---cCCCCCccEEE--------EcCe--------------eEEEccC------Ccc
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCIL---GEVPKISGTLK--------LCGT--------------KAYVAQS------PWI 692 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~il---G~~~~~~G~i~--------~~g~--------------~~yv~Q~------~~i 692 (1496)
++|++++|+||+||||||++++|. |...+++|.+. .+|. +++++|. .++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999987 4442 3677754 345
Q ss_pred CCCcHHHHhc
Q 039402 693 QSGKIEDNIL 702 (1496)
Q Consensus 693 ~~~ti~eNI~ 702 (1496)
.+.++.+||.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 5667777764
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=6.7e-06 Score=89.47 Aligned_cols=55 Identities=27% Similarity=0.326 Sum_probs=42.2
Q ss_pred EEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEE--EEcC
Q 039402 625 FSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL--KLCG 681 (1496)
Q Consensus 625 ~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i--~~~g 681 (1496)
++|.. ......+..++..++|++++|+|++||||||++++|.+.+. ..|.+ .++|
T Consensus 5 ~~~~~-~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 5 IKWHE-CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp ------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred Ccccc-cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 34532 23456777888889999999999999999999999999987 67876 6654
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.66 E-value=1.5e-05 Score=86.67 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=25.0
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.++++||||++++|++|+|+|++||||||+.+.|.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36899999999999999999999999999999999876
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.65 E-value=1.6e-05 Score=86.33 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=24.8
Q ss_pred ecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 627 WDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 627 ~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
|++++..++++|+||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 6 HHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 33345568999999999999999999999999999999999765
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.65 E-value=1.5e-06 Score=96.56 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=34.4
Q ss_pred eEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe
Q 039402 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 682 (1496)
Q Consensus 640 ~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~ 682 (1496)
++++.+ ++++|+||||||||||+++|.|.++|++|.|.++|.
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~ 63 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNT 63 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-----
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCE
Confidence 566676 899999999999999999999999999999988874
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.65 E-value=3.8e-06 Score=94.75 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=36.0
Q ss_pred cEEEEee-EEEecCCCCCCceeeeeEEEeC---CcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 617 ALDIVDG-NFSWDISSHNPTLKDINLKVFH---GMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 617 ~i~~~~~-~~~~~~~~~~~~L~~i~l~i~~---G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.++++|+ +++|+ ++.++|+|+||++++ |+.++|+|++||||||+.+.|.+.+
T Consensus 17 ~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD--EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec--CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5889999 99983 246799999999999 9999999999999999999998865
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.65 E-value=1.6e-05 Score=103.82 Aligned_cols=65 Identities=14% Similarity=0.067 Sum_probs=50.2
Q ss_pred CCCchHHHHHHHHHHHccCCCEEEEEcCCC-CCCHHHHHHHHHHHHHhcCC-cEEEE-EccCcchhcc
Q 039402 1382 NWSMGQRQLVCLGRVLLKRSKILMLDEATA-SVDTATDNLIQQTLRQHFSD-CTVLT-IAHRITSVID 1446 (1496)
Q Consensus 1382 nLS~GQrQll~LARALLr~~~ILiLDEaTs-slD~~Td~~Iq~~I~~~f~~-~TVI~-IAHRl~ti~~ 1446 (1496)
-.|.|+.++..++++++.+++++|+|||.. ++|.+.-..+.+.+.+..++ +++++ .||..+.+.+
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 468999999999999999999999999997 89977665555666555555 45555 4887766543
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=1.7e-05 Score=86.51 Aligned_cols=126 Identities=14% Similarity=0.171 Sum_probs=73.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHH
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWE 1354 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~ 1354 (1496)
.|||+|++||||||+.+.|.++ |...+|+-+ +.+.+ ..|.. +.+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~--------~~~~~-----------------~~~~~----~~~~~ 49 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV--------VAREV-----------------VAKDS----PLLSK 49 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH--------HHHHT-----------------TCSSC----HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH--------HHHHH-----------------ccCCh----HHHHH
Confidence 6999999999999999999883 666666522 21111 11110 11112
Q ss_pred HHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEE
Q 039402 1355 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTV 1434 (1496)
Q Consensus 1355 aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TV 1434 (1496)
..+..+. . ...+.|+.+|..+++.+..+|..+-.+ ++.+++...+.+.+.+++. ++.++
T Consensus 50 i~~~~g~-----------------~-~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~v 108 (206)
T 1jjv_A 50 IVEHFGA-----------------Q-ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYT 108 (206)
T ss_dssp HHHHHCT-----------------T-CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEE
T ss_pred HHHHhCH-----------------H-HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEE
Confidence 2222111 0 112678899999999888877543222 3345666666666666543 45578
Q ss_pred EEEccCcchh---cccCEEEEEeC
Q 039402 1435 LTIAHRITSV---IDSDLVLLLNH 1455 (1496)
Q Consensus 1435 I~IAHRl~ti---~~~DrIlVL~~ 1455 (1496)
|+-+|.+... ..||++++++.
T Consensus 109 v~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 109 LFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp EEECTTTTTTTCGGGCSEEEEEEC
T ss_pred EEEechhhhcCcHhhCCEEEEEEC
Confidence 8888877654 45999999974
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=3.3e-05 Score=84.23 Aligned_cols=125 Identities=15% Similarity=0.226 Sum_probs=69.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHh
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEI 727 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~ 727 (1496)
+++|+|++||||||+.+.|.+. |...+++ +.+...+.. +. .+.+.+..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~-------------d~~~~~~~~--~~-~~~~~~i~~~~-------- 54 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA-------------DVVAREVVA--KD-SPLLSKIVEHF-------- 54 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH-------------HHHHHHTTC--SS-CHHHHHHHHHH--------
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch-------------HHHHHHHcc--CC-hHHHHHHHHHh--------
Confidence 6899999999999999999882 4333322 111111111 11 11222222211
Q ss_pred ccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCc---
Q 039402 728 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEF--- 804 (1496)
Q Consensus 728 l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~--- 804 (1496)
|+. .-.++|+.+|..+++.++.+|+....+ .+.++|...+.+.+ .+.. ..+.++|+.+|.+..
T Consensus 55 ---------g~~-~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~-~~~~-~~~~~vv~~~~~l~e~~~ 120 (206)
T 1jjv_A 55 ---------GAQ-ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQ-KLAE-QTAPYTLFVVPLLIENKL 120 (206)
T ss_dssp ---------CTT-CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHH-HHHT-CCSSEEEEECTTTTTTTC
T ss_pred ---------CHH-HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHH-HHHh-cCCCEEEEEechhhhcCc
Confidence 111 124688999999999999888654333 34456665554432 2221 246688888888754
Q ss_pred cccCCEEEEEe
Q 039402 805 LPAADLILVMK 815 (1496)
Q Consensus 805 l~~~d~i~~l~ 815 (1496)
.+.+|.+++++
T Consensus 121 ~~~~d~vi~l~ 131 (206)
T 1jjv_A 121 TALCDRILVVD 131 (206)
T ss_dssp GGGCSEEEEEE
T ss_pred HhhCCEEEEEE
Confidence 34599999886
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.63 E-value=9.4e-06 Score=95.24 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=50.3
Q ss_pred cceEEEEeEEeEeCCCCCccce--------------eeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQ--------------GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk--------------~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
.|.|+|+||++.|+.. +.+|+ |+++.|.+||+++|+|++|+|||||++.|.|...
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 6889999999999765 45888 8999999999999999999999999999999863
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=1.3e-05 Score=87.58 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=41.3
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhcc
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILF 703 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~ 703 (1496)
++++|++++|+|++||||||+++.|.+.++ .+.+++|++.++.+ +|+..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----------~~~~i~~D~~~~~~---~~~~~ 65 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP----------NCSVISQDDFFKPE---SEIET 65 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST----------TEEEEEGGGGBCCG---GGSCB
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC----------CcEEEeCCccccCH---hHhhc
Confidence 567899999999999999999999999875 26889999988765 56654
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.62 E-value=5.4e-06 Score=89.79 Aligned_cols=73 Identities=19% Similarity=0.364 Sum_probs=49.7
Q ss_pred eEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC-------------CCccEEEEcCee----------EEEccCCccCCCc
Q 039402 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-------------KISGTLKLCGTK----------AYVAQSPWIQSGK 696 (1496)
Q Consensus 640 ~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-------------~~~G~i~~~g~~----------~yv~Q~~~i~~~t 696 (1496)
|+...+|++++|+||+|||||||++.|++.++ |..|+ ++|.. ..+.|...++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i~~~~fle~~~ 90 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNISANEFLEFGS 90 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhhhhhhhhhhhh
Confidence 45556899999999999999999999999886 55565 45532 1234666777788
Q ss_pred HHHHhccCCCCCHHHHHHHHH
Q 039402 697 IEDNILFGKEMNRERYNAVLD 717 (1496)
Q Consensus 697 i~eNI~~g~~~~~~~~~~v~~ 717 (1496)
+.+| .+|.+ .+..+++++
T Consensus 91 ~~~n-~YGt~--~~~v~~~l~ 108 (197)
T 3ney_A 91 YQGN-MFGTK--FETVHQIHK 108 (197)
T ss_dssp ETTE-EEEEE--HHHHHHHHH
T ss_pred hhce-ecccc--hhhHHHHHh
Confidence 8888 46653 233444443
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00021 Score=84.97 Aligned_cols=62 Identities=23% Similarity=0.225 Sum_probs=45.9
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEe-cCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCc
Q 039402 739 RGINLSGGQKQRIQIARALYQDSDIYLFD-DPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQV 802 (1496)
Q Consensus 739 ~g~~LSGGQkqRv~LARAl~~~~~illLD-ep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 802 (1496)
....+|+|++|++. +.+...++-++++| ++.+++|......+++.+.. ...++.+|+|.+..
T Consensus 228 ~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~-~~~~~piilV~NK~ 290 (357)
T 2e87_A 228 PISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG-EFKDLPFLVVINKI 290 (357)
T ss_dssp CSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHH-HTTTSCEEEEECCT
T ss_pred chhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHH-hcCCCCEEEEEECc
Confidence 34568999999887 55555777789999 99999999887777665433 22378888888443
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=2e-05 Score=101.26 Aligned_cols=38 Identities=26% Similarity=0.264 Sum_probs=30.3
Q ss_pred eEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC--CccEE
Q 039402 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK--ISGTL 677 (1496)
Q Consensus 640 ~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~--~~G~i 677 (1496)
++++++|..++|+|++|+|||||++.|++...+ ..|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 456789999999999999999999999977654 55655
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.53 E-value=7.5e-05 Score=90.37 Aligned_cols=43 Identities=21% Similarity=0.091 Sum_probs=38.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI 1314 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i 1314 (1496)
++..++++|++||||||++..|.+.+.+.++++.+-+.|+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~ 138 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP 138 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence 5689999999999999999999999999999999988886543
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.51 E-value=6.1e-06 Score=103.13 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=62.2
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCcc-EEE-ECCeeCCC-------CCh---HHHhcccEEEcccccccccc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG-QIL-IDGIDISL-------IGL---HDLRSRLSIIPQDPVMFEGT 1336 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G-~I~-IDG~dI~~-------i~l---~~LR~~i~iIpQdp~LF~gT 1336 (1496)
.+++|+.++|+|++|||||||+++|.+.+.|++| +|. +||.++.. +.. ...++++++++|+. +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence 5789999999999999999999999999999987 784 99977632 122 22456789999874 3
Q ss_pred hhhccC---CCC--CCcHHHHHHHHHHcC
Q 039402 1337 VRSNLD---PLE--ESTDEQIWEALDKCQ 1360 (1496)
Q Consensus 1337 IR~NLd---p~~--~~sd~eI~~aL~~~~ 1360 (1496)
..+|+. ... ....++..+.+++.+
T Consensus 440 ~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 440 KNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred hcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 344442 111 123456777887765
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.50 E-value=4.1e-05 Score=83.19 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=29.6
Q ss_pred EEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc
Q 039402 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 675 (1496)
Q Consensus 641 l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G 675 (1496)
+++++|++++|+||+||||||++++|.|.+.|..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999976554
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.49 E-value=8.3e-07 Score=103.51 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=72.4
Q ss_pred CceeeeeEEEeCCc------EEEEEecCCCcHHHHHHHHhcCCCC--CccEEEEcCeeEEEccCCccCCCcHHHHh-c--
Q 039402 634 PTLKDINLKVFHGM------RVAVCGTVGSGKSSLLSCILGEVPK--ISGTLKLCGTKAYVAQSPWIQSGKIEDNI-L-- 702 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~------~~~ivG~~GsGKSTLl~~ilG~~~~--~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI-~-- 702 (1496)
..|++++..+.+++ +++|+||||||||||+++|.|.+.+ .+| .+++++++.+.......+.. .
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~------~v~~i~~D~f~~~~~~l~~~~~~~ 147 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHP------NVEVITTDGFLYSNAKLEKQGLMK 147 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCC------CEEEEEGGGGBCCHHHHHHTTCGG
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCC------eEEEEeecccccchhhhhhHHHHh
Confidence 34555665565555 8999999999999999999998874 444 45677777765444333321 1
Q ss_pred -cCC--CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 039402 703 -FGK--EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA 775 (1496)
Q Consensus 703 -~g~--~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~ 775 (1496)
+|. .+|.+...+.++. +..|..+. . .-..|-+..+|+.-+......|+|+|+|-+..-.|.
T Consensus 148 ~~g~P~~~D~~~l~~~L~~---------L~~g~~~v-~--~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 148 RKGFPESYDMPSLLRVLNA---------IKSGQRNV-R--IPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp GTTSGGGBCHHHHHHHHHH---------HHTTCSSE-E--EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hccCcccccHHHHHHHHHh---------hhcccccc-c--cchhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 232 3555555444433 22232100 0 011222223333222344578999999999876664
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.46 E-value=3.2e-05 Score=97.16 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=47.8
Q ss_pred EEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCe
Q 039402 1248 LLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309 (1496)
Q Consensus 1248 f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~ 1309 (1496)
.+++..+|.. ..+++++++++ +|+.+.++|++|+|||||+++|.+...+..|+|.++|.
T Consensus 86 ~~~vk~~i~~--~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 86 LEKVKERILE--YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp CHHHHHHHHH--HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHHHHH--HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 4455555532 24678888888 89999999999999999999999999988888887763
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.45 E-value=3e-06 Score=104.72 Aligned_cols=113 Identities=19% Similarity=0.302 Sum_probs=74.0
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCee-------------EEEccCCc-cCC-CcHH
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPW-IQS-GKIE 698 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~-------------~yv~Q~~~-i~~-~ti~ 698 (1496)
..++++++++++| +.|+||+|+|||||+++|.|+.. .|.+.++|.. .+++|.+. ... -.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 4688999999999 99999999999999999999985 6778777631 23444432 111 1344
Q ss_pred HHh-ccCCCC------CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC
Q 039402 699 DNI-LFGKEM------NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS 771 (1496)
Q Consensus 699 eNI-~~g~~~------~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s 771 (1496)
|+| .++... ..+...+.+.. -+ ..|||||+|+..+++|...+|++ ||+++-
T Consensus 130 DEId~l~~~r~~~~~~~~~e~~~~l~~-----LL---------------~~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDEREQTLNQ-----LL---------------VEMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHHHHHHHH-----HH---------------HHGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred ehHHHHHHhhccCcCCCcHHHHHHHHH-----HH---------------HHhcccccCccEEEEEecCChhh--cCcccc
Confidence 454 222210 01111111111 01 24788999999999999999987 898875
Q ss_pred C
Q 039402 772 A 772 (1496)
Q Consensus 772 a 772 (1496)
.
T Consensus 188 r 188 (499)
T 2dhr_A 188 R 188 (499)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.44 E-value=3.9e-05 Score=83.54 Aligned_cols=48 Identities=23% Similarity=0.240 Sum_probs=41.6
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH 1317 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~ 1317 (1496)
.++|+.+||+|++||||||+++.|.+.+++.+|.|.+.|.|....+..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 568899999999999999999999999998899999887776555443
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00066 Score=80.15 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=30.5
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccE
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~ 676 (1496)
+++|+++.|.||+|||||||+..+++...+..|.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~ 91 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGV 91 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCe
Confidence 7899999999999999999999999988765554
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=5.4e-05 Score=80.12 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=40.8
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhc-ccEEEccc
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS-RLSIIPQD 1329 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~-~i~iIpQd 1329 (1496)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+-++.. ...+++ .+++.+|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 468999999999999999999999875 899999877653 222332 45666665
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00021 Score=83.84 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=34.8
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEE
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI 1306 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~I 1306 (1496)
-|+.+.--+++|+.+.|.||+|+|||||+.-+..-.....+.+.+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~ 79 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV 79 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 566666679999999999999999999998887655433444433
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=5.4e-05 Score=80.84 Aligned_cols=34 Identities=12% Similarity=0.313 Sum_probs=28.9
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCC-CccEE
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPK-ISGTL 677 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-~~G~i 677 (1496)
.+|++++|+||||||||||++.|+|.+++ ..|.|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i 37 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 37 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEee
Confidence 36899999999999999999999998874 44544
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0003 Score=82.10 Aligned_cols=110 Identities=12% Similarity=0.093 Sum_probs=70.4
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHH
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERY 712 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~ 712 (1496)
-+.|+++.--+++|+++.|.|++|+|||||+..++...-. .| ..+.|++ .++..+++
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-----~~vl~~s-----------------lE~s~~~l 111 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-----DVVNLHS-----------------LEMGKKEN 111 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-----CEEEEEE-----------------SSSCHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-----CeEEEEE-----------------CCCCHHHH
Confidence 3457776656899999999999999999999887754321 12 2334433 23444443
Q ss_pred HHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCC
Q 039402 713 NAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAV 773 (1496)
Q Consensus 713 ~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saL 773 (1496)
.+-+.+....-++..+..|. ..||+++++|+.-|...+.++++++.|+|...+
T Consensus 112 ~~R~~~~~~~i~~~~l~~~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~ 164 (315)
T 3bh0_A 112 IKRLIVTAGSINAQKIKAAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQSV 164 (315)
T ss_dssp HHHHHHHHTTCCHHHHHSCH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH
T ss_pred HHHHHHHHcCCCHHHHhcCC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH
Confidence 33232221111222221111 138999999999999999999999999986443
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.28 E-value=7.5e-05 Score=81.12 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=29.9
Q ss_pred EEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 039402 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681 (1496)
Q Consensus 641 l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g 681 (1496)
++.++|++++|+|+||||||||+++|.|.+ |.+.++|
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 566889999999999999999999999976 7777765
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00013 Score=86.43 Aligned_cols=42 Identities=26% Similarity=0.274 Sum_probs=32.3
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhccc-CC------CccEEEECCee
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIV-EP------AAGQILIDGID 1310 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~-ep------~~G~I~IDG~d 1310 (1496)
-+++|+.+.|.|++|||||||+..+..-. .| ..+.++||...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 58899999999999999999999888752 22 23456666543
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.25 E-value=5.6e-05 Score=88.13 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=38.5
Q ss_pred ccceeeeEEeeCCc------EEEEEcCCCCCHHHHHHHHhcccC--CCccEEEEC
Q 039402 1261 LVLQGISCTFPGGE------KTGIVGRTGSGKSTLIQTLFRIVE--PAAGQILID 1307 (1496)
Q Consensus 1261 ~vLk~iS~~I~~Ge------kvgIVGrTGSGKSTLl~~L~rl~e--p~~G~I~ID 1307 (1496)
..|++++..+.+++ .+||+|++||||||+++.|.++++ |.+|++.+-
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i 128 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVI 128 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEE
Confidence 36788888888776 899999999999999999999987 456664443
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.25 E-value=6.3e-05 Score=88.85 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=39.3
Q ss_pred CccceeeeEEeeCCcE--EEEEcCCCCCHHHHHHHHhcccCCCccEE
Q 039402 1260 PLVLQGISCTFPGGEK--TGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~Gek--vgIVGrTGSGKSTLl~~L~rl~ep~~G~I 1304 (1496)
+.+++.++..++.|+. +.+.|++|+||||+++++.+.+.+..|++
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~ 77 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSN 77 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccc
Confidence 3588999999999988 99999999999999999999987665543
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00054 Score=81.83 Aligned_cols=43 Identities=12% Similarity=0.035 Sum_probs=31.8
Q ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc----CCcEEEEEccCcc
Q 039402 1399 KRSKILMLDEATASVDTATDNLIQQTLRQHF----SDCTVLTIAHRIT 1442 (1496)
Q Consensus 1399 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f----~~~TVI~IAHRl~ 1442 (1496)
.+|.+|++||+... |...-..+.+.+.+.- .+.++|.++|+.+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45779999999876 7776666666664322 4778999999884
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0014 Score=76.86 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=62.1
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCC-CC-ccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHh
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVP-KI-SGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC 719 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-~~-~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~ 719 (1496)
-+++|+++.|.||+|||||||+..++.... +. .|- .++.+.|+.-+.- ++.++..+..+..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg--~~~~vlyi~~e~~---------------~~~~~l~~~~~~~ 165 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG--LSGKAVYIDTEGT---------------FRWERIENMAKAL 165 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC--CSCEEEEEESSSC---------------CCHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC--CCCeEEEEECCCC---------------CCHHHHHHHHHHh
Confidence 478999999999999999999998887642 21 110 1234555543321 2334443333333
Q ss_pred chhhH--HHhccCCCcccccCCCCCCChH-HHHHHHHHHHHc---cCCCEEEEecCCCCCCH
Q 039402 720 SLKKD--LEILSFGDQTVIGERGINLSGG-QKQRIQIARALY---QDSDIYLFDDPFSAVDA 775 (1496)
Q Consensus 720 ~l~~d--~~~l~~g~~t~ig~~g~~LSGG-QkqRv~LARAl~---~~~~illLDep~saLD~ 775 (1496)
+...+ ++.+ .+.+ ..++. +.+.+..++++. .+++++++|+.++-.+.
T Consensus 166 g~~~~~~~~~l------~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 166 GLDIDNVMNNI------YYIR---AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp TCCHHHHHHTE------EEEE---CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred CCCHHHHhccE------EEEe---CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 33211 0111 0111 11222 446677777777 67999999999887643
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0006 Score=81.44 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=26.2
Q ss_pred CCc--EEEEEecCCCcHHHHHHHHhcCCCCCc
Q 039402 645 HGM--RVAVCGTVGSGKSSLLSCILGEVPKIS 674 (1496)
Q Consensus 645 ~G~--~~~ivG~~GsGKSTLl~~ilG~~~~~~ 674 (1496)
+|. .+.|+||+|+|||||++.+.+++.+..
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~ 72 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKT 72 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence 456 899999999999999999999887653
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00037 Score=77.63 Aligned_cols=131 Identities=13% Similarity=0.119 Sum_probs=65.8
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEccccccccc-chhhccCC-CCCC
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLDP-LEES 1347 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~g-TIR~NLdp-~~~~ 1347 (1496)
+..|+.+.|+|+|||||||++..+..-.....|. ...+.++.|.|..... ++.+|+.- ++..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4578999999999999999877653221111111 2356777787764432 44444421 0000
Q ss_pred cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCC---CCchHHHHHHHHHHHccCCCEEEEEcCCC-CCCHHHHHHHHH
Q 039402 1348 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGEN---WSMGQRQLVCLGRVLLKRSKILMLDEATA-SVDTATDNLIQQ 1423 (1496)
Q Consensus 1348 sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n---LS~GQrQll~LARALLr~~~ILiLDEaTs-slD~~Td~~Iq~ 1423 (1496)
++. .+. .....+......+.+ -+.|.-.+. .+.-+++-+++|+|||-. ++|........+
T Consensus 137 -----------~~~--~~g-~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 137 -----------PGK--SCG-YSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp -----------TTS--SEE-EEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred -----------cCc--eEE-EeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 000 000 000001111001111 133444333 344688999999999975 566665533344
Q ss_pred HHHHhcCCc
Q 039402 1424 TLRQHFSDC 1432 (1496)
Q Consensus 1424 ~I~~~f~~~ 1432 (1496)
.+....+++
T Consensus 201 ~i~~~~~~~ 209 (235)
T 3llm_A 201 DVVQAYPEV 209 (235)
T ss_dssp HHHHHCTTS
T ss_pred HHHhhCCCC
Confidence 444444444
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00014 Score=88.88 Aligned_cols=67 Identities=15% Similarity=0.344 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCCCCCH-HHHHHHHHHHHHhc-CCcEEEEEccCcch-hcc-cCEEEE-EeCCeEeEecChhh
Q 039402 1400 RSKILMLDEATASVDT-ATDNLIQQTLRQHF-SDCTVLTIAHRITS-VID-SDLVLL-LNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~-~Td~~Iq~~I~~~f-~~~TVI~IAHRl~t-i~~-~DrIlV-L~~G~IvE~g~p~~ 1466 (1496)
+++||++||+..-.+. .+.+.+..++++.. .++++|+++|+... +.. .+++.- ++.|.+++.+.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~ 265 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCH
Confidence 8999999999877664 56677777777644 46888899998433 322 233332 56788888877653
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.002 Score=71.72 Aligned_cols=28 Identities=39% Similarity=0.564 Sum_probs=24.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCcc
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPKISG 675 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~~~G 675 (1496)
.++|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999998776665
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00044 Score=80.17 Aligned_cols=147 Identities=21% Similarity=0.156 Sum_probs=76.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEEC-CeeCCCCChHHHhcccEEEcccccccccchhhccC-CCCCCcH
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID-GIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD-PLEESTD 1349 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ID-G~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLd-p~~~~sd 1349 (1496)
++.+|+|||++|+|||||++.|.+.- +.+. +.+-. ..+...++++|+..-+. -+| |.. ..+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~-----~iDTpG~-~~~ 69 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAI-----YVDTPGL-HME 69 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEE-----EESSSSC-CHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEE-----EEECcCC-Ccc
Confidence 34489999999999999999999852 2221 11111 12345678887753110 123 332 211
Q ss_pred HHHHHHHHHcCCcHHHHhccCCcccc--cccCCCCCCchHHHHHHHHHHHc--cCCCEEEEEcCCCCCCHHH-HHHHHHH
Q 039402 1350 EQIWEALDKCQLGDEVRKKEGKLDSK--VTENGENWSMGQRQLVCLGRVLL--KRSKILMLDEATASVDTAT-DNLIQQT 1424 (1496)
Q Consensus 1350 ~eI~~aL~~~~L~~~i~~lp~gLdt~--v~e~G~nLS~GQrQll~LARALL--r~~~ILiLDEaTsslD~~T-d~~Iq~~ 1424 (1496)
-...+++.-... +...-...|.. |-+... +|.|++ .+++++. +.|.|+++ +-+|... .+.+.+.
T Consensus 70 --~~~~l~~~~~~~-~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~ 138 (301)
T 1ega_A 70 --EKRAINRLMNKA-ASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPH 138 (301)
T ss_dssp --HHHHHHHHHTCC-TTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHH
T ss_pred --chhhHHHHHHHH-HHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHH
Confidence 111221100000 00111222322 223333 899887 4456655 67889998 6788765 4555555
Q ss_pred HHHhcC--C--cEEEEEccCcchhcc
Q 039402 1425 LRQHFS--D--CTVLTIAHRITSVID 1446 (1496)
Q Consensus 1425 I~~~f~--~--~TVI~IAHRl~ti~~ 1446 (1496)
+.+..+ + .++.+.||.-.-+.+
T Consensus 139 l~~l~~~~~~~~~i~iSA~~g~~v~~ 164 (301)
T 1ega_A 139 LQFLASQMNFLDIVPISAETGLNVDT 164 (301)
T ss_dssp HHHHHTTSCCSEEEECCTTTTTTHHH
T ss_pred HHHHHHhcCcCceEEEECCCCCCHHH
Confidence 554322 2 356666777655443
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00012 Score=79.18 Aligned_cols=56 Identities=27% Similarity=0.354 Sum_probs=39.3
Q ss_pred eEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc--------ccCCCccEEEECCee
Q 039402 1253 VRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR--------IVEPAAGQILIDGID 1310 (1496)
Q Consensus 1253 ~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~r--------l~ep~~G~I~IDG~d 1310 (1496)
++|++. ..+++++|++.+++ ||+++|++|+|||||++.+.+ ...++.+.+.++|++
T Consensus 7 ~~~~~~-~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 7 WIYSGF-SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHH-HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 456543 45899999998887 799999999999999999986 223345666666643
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=8e-05 Score=79.23 Aligned_cols=41 Identities=27% Similarity=0.330 Sum_probs=34.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCCCcc--EEEECCeeCC
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG--QILIDGIDIS 1312 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G--~I~IDG~dI~ 1312 (1496)
++|+.|+|+|.+||||||+.+.|.+.+.+ .| .|.+||.++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998876 67 7777875543
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.06 E-value=9.2e-05 Score=87.52 Aligned_cols=53 Identities=21% Similarity=0.284 Sum_probs=47.3
Q ss_pred ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC
Q 039402 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL 1313 (1496)
Q Consensus 1261 ~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~ 1313 (1496)
.+++++++.+++|.+++|+|++|+|||||++.|.+.+.+.+|++.+-+.|..+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 47899999999999999999999999999999999998888888887777654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00027 Score=86.51 Aligned_cols=61 Identities=28% Similarity=0.501 Sum_probs=39.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc------------CCCccEEEECCeeCCCCChHHHhcccEEEcccccccc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIV------------EPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFE 1334 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~------------ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~ 1334 (1496)
-+++|||++|+|||||++.|.|.. +|.+|.+.+||.++.-++...+|++.++.+|+...|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 489999999999999999999974 3678999999987765555556666677777665554
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00014 Score=79.02 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=33.6
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEc
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC 680 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~ 680 (1496)
.++|++++|+|++|||||||++.|.+.+++..|.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 56899999999999999999999999998877776554
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00018 Score=85.16 Aligned_cols=44 Identities=25% Similarity=0.398 Sum_probs=37.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI 1314 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i 1314 (1496)
+++.+|||+|++|||||||++.|.+...+.+|+|.|.+.|..+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 35679999999999999999999999999999999988887654
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00022 Score=79.23 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=31.4
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g 681 (1496)
+.++|++++|+|++|||||||+++|.|. .|+|.+.+
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 4578999999999999999999999997 67776655
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0027 Score=70.64 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=24.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAG 1302 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G 1302 (1496)
+|+|||++|+|||||++.|+|-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 7999999999999999999987665554
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00032 Score=76.73 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=27.5
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPK 672 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~ 672 (1496)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999886
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0005 Score=73.71 Aligned_cols=47 Identities=28% Similarity=0.379 Sum_probs=27.9
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc--------ccCCCccEEEECCe
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR--------IVEPAAGQILIDGI 1309 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~r--------l~ep~~G~I~IDG~ 1309 (1496)
+++++++..++. ||+++|++|+|||||++.+.+ ...++.+++.++|.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 788999998877 999999999999999999987 22333456666664
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0027 Score=74.92 Aligned_cols=108 Identities=13% Similarity=0.191 Sum_probs=60.6
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCC--CCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHh
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEV--PKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC 719 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~--~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~ 719 (1496)
-+++|+++.|.||+|||||||+..++... ++..|. .++.+.|+.-+.- ++.++..+..+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg--~~~~vlyi~~E~~---------------~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY--PGGKIIFIDTENT---------------FRPDRLRDIADRF 180 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB--CCCEEEEEESSSC---------------CCHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC--CCCeEEEEECCCC---------------CCHHHHHHHHHHc
Confidence 47899999999999999999999988753 322110 1234556544321 2333333333333
Q ss_pred chhhH--HHhccCCCcccccCCCCCCChH-HHHHHHHHHHHc----cCCCEEEEecCCCCCCH
Q 039402 720 SLKKD--LEILSFGDQTVIGERGINLSGG-QKQRIQIARALY----QDSDIYLFDDPFSAVDA 775 (1496)
Q Consensus 720 ~l~~d--~~~l~~g~~t~ig~~g~~LSGG-QkqRv~LARAl~----~~~~illLDep~saLD~ 775 (1496)
+...+ ++.+- +-. ..++. +.+.+..++.+. .+++++++|.+++-.++
T Consensus 181 g~~~~~~l~~l~------~~~---~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 181 NVDHDAVLDNVL------YAR---AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp TCCHHHHHHTEE------EEE---CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CCCHHHHHhcee------Eee---cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 32211 11110 000 11222 334555555555 57999999999987654
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00043 Score=82.36 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=26.9
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCCCc
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA 1301 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~ 1301 (1496)
+++..+.|.|++|+|||||++.+.+...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999876543
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0029 Score=72.81 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=52.6
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhH
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKD 724 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d 724 (1496)
++.-+.|.||+|+|||||++++.++.... -+.+++ +.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~--~~~i~~--------~~l-------------------------------- 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSAT--FLNISA--------ASL-------------------------------- 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCE--EEEEES--------TTT--------------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCC--eEEeeH--------HHH--------------------------------
Confidence 46789999999999999999999876310 011110 000
Q ss_pred HHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 039402 725 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA 775 (1496)
Q Consensus 725 ~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~ 775 (1496)
. .... -+++++.|..+++|...+|.++++||+-+..+.
T Consensus 91 ----~---~~~~------~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 91 ----T---SKYV------GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp ----S---SSSC------SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred ----h---hccc------chHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 0 0001 136788888888888899999999999887654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.001 Score=80.49 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=30.3
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL 679 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~ 679 (1496)
++.+++++|++||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999998877666654
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00017 Score=84.28 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=40.1
Q ss_pred eeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 039402 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681 (1496)
Q Consensus 636 L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g 681 (1496)
++++||++++|++++|+|++|+||||++..|++.+.+..|+|.+.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4678888899999999999999999999999999998888876643
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00021 Score=89.83 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=40.2
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g 681 (1496)
.+++++++++ +|+.++++||+|+|||||+++|.+.+.+..|.|.+.|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 3567777777 8999999999999999999999999988878776554
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0015 Score=80.37 Aligned_cols=57 Identities=11% Similarity=0.182 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHHccCCCEEEEEc-CCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchh
Q 039402 1385 MGQRQLVCLGRVLLKRSKILMLDE-ATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSV 1444 (1496)
Q Consensus 1385 ~GQrQll~LARALLr~~~ILiLDE-aTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti 1444 (1496)
..|.+....++..+++++++|+.. ++.++. ..+..+.+.+++ .++.+|++.++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~-~~d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVT-AADEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSC-HHHHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCC-hHHHHHHHHHHH--cCCCEEEEEECccch
Confidence 358888899999999998766655 444444 445667777765 478899999887754
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0029 Score=77.35 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=31.4
Q ss_pred cc-CCCEEEEecCCCCCCH-HHHHHHHHHHHHH-HhCCcEEEEEccCc
Q 039402 758 YQ-DSDIYLFDDPFSAVDA-HTGSHLFQEVLLG-LLSSKTVIYVTHQV 802 (1496)
Q Consensus 758 ~~-~~~illLDep~saLD~-~~~~~i~~~~~~~-~~~~~tvilvtH~~ 802 (1496)
|. +++++++||+..-.+. .+...++. .++. ...++.+|++||+.
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~-~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFH-TFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHH-HHHHHHTTTCEEEEEESSC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHH-HHHHHHHCCCeEEEEECCC
Confidence 45 8999999999877764 45555554 4444 34578899999984
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00032 Score=87.71 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=35.5
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc-EEE-EcC
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG-TLK-LCG 681 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G-~i~-~~g 681 (1496)
.+++|++++|+|+||||||||+++|.|.+.+.+| ++. ++|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 4789999999999999999999999999999886 664 655
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00077 Score=71.01 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
++|.||+|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999999854
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00042 Score=73.23 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=28.8
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g 681 (1496)
.+|++++|+|++||||||+++.|.+.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 468999999999999999999998864 6666654
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0029 Score=72.81 Aligned_cols=70 Identities=9% Similarity=0.028 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHccCCCEEEEEcCCCCCCHHH----------HHHHHHHHHHhc-----CCcEEEEEccCcchhc----
Q 039402 1385 MGQRQLVCLGRVLLKRSKILMLDEATASVDTAT----------DNLIQQTLRQHF-----SDCTVLTIAHRITSVI---- 1445 (1496)
Q Consensus 1385 ~GQrQll~LARALLr~~~ILiLDEaTsslD~~T----------d~~Iq~~I~~~f-----~~~TVI~IAHRl~ti~---- 1445 (1496)
++++++-.++++...+|.||++||+.+-.+... ...+...+...- .+..+|..+++...+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 567777777888788999999999987655322 112333333321 1345777888865432
Q ss_pred -ccCEEEEEe
Q 039402 1446 -DSDLVLLLN 1454 (1496)
Q Consensus 1446 -~~DrIlVL~ 1454 (1496)
.+|+++.+.
T Consensus 178 ~R~~~~i~~~ 187 (297)
T 3b9p_A 178 RRFTKRVYVS 187 (297)
T ss_dssp HHCCEEEECC
T ss_pred hhCCeEEEeC
Confidence 467666554
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0025 Score=73.66 Aligned_cols=51 Identities=18% Similarity=0.099 Sum_probs=44.8
Q ss_pred ee-eeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC
Q 039402 1264 QG-ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG 1315 (1496)
Q Consensus 1264 k~-iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~ 1315 (1496)
++ ++++.+ |+.++++|++|+||||++..|.+.+.+.+|++.+.+.|+..-.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~ 140 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPA 140 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHH
Confidence 45 777776 9999999999999999999999999988999999888876544
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0083 Score=70.96 Aligned_cols=47 Identities=26% Similarity=0.279 Sum_probs=33.1
Q ss_pred cceeeeE--EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-ccEEEECC
Q 039402 1262 VLQGISC--TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA-AGQILIDG 1308 (1496)
Q Consensus 1262 vLk~iS~--~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~-~G~I~IDG 1308 (1496)
.|+.+-= -+++|+.+.|.|++|+|||||+..+..-.... ..-++||.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4555421 38899999999999999999998877644322 23455654
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0062 Score=68.50 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=29.0
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCee
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGID 1310 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~d 1310 (1496)
.+++++...++| +.|+|++|+|||||++++.+..... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 344444545554 9999999999999999999876421 35555433
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00031 Score=82.57 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=47.3
Q ss_pred ccEEEEeeEEEecCCCCCCcee--------------eeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 616 TALDIVDGNFSWDISSHNPTLK--------------DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~--------------~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
..+.|+|+++.|+. ++..|+ |+++.+.+|+.++|+||+|+|||||++.|.+.+.
T Consensus 132 ~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 132 NKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 35788899999963 467888 8999999999999999999999999999988653
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00062 Score=82.26 Aligned_cols=43 Identities=19% Similarity=0.027 Sum_probs=37.2
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g 681 (1496)
++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 456666 8999999999999999999999999998888877643
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00095 Score=74.13 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=51.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHh---cccCCCccEE--------EECCeeCCCCC-hHHHhcccEEEc------ccccccc
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLF---RIVEPAAGQI--------LIDGIDISLIG-LHDLRSRLSIIP------QDPVMFE 1334 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~---rl~ep~~G~I--------~IDG~dI~~i~-l~~LR~~i~iIp------Qdp~LF~ 1334 (1496)
.-.++|+|++||||||+.+.|. |+.-.+.|.+ .-.|+|..... +.++-..+.+.. |+..|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 3489999999999999999998 4444555655 24566655442 445555555544 3333443
Q ss_pred cchhhccCCCCCCcHHHHHHHHHHcCCcHHHH
Q 039402 1335 GTVRSNLDPLEESTDEQIWEALDKCQLGDEVR 1366 (1496)
Q Consensus 1335 gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~ 1366 (1496)
..|.+||. .+++-....++.-...|+
T Consensus 89 ~~v~~~ir------~~~v~~~~s~va~~~~vr 114 (233)
T 3r20_A 89 EDVSSEIR------GDAVTGAVSAVSAVPAVR 114 (233)
T ss_dssp EECTTGGG------SHHHHHHHHHHHTCHHHH
T ss_pred eehhhhhc------chHHHHHHHHHhcchHHH
Confidence 34444432 345555544444444443
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0012 Score=78.58 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=26.8
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCCCc
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 674 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~ 674 (1496)
.++..+.|+||+|+|||||++.+.+++.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4577899999999999999999999876543
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00054 Score=80.77 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=34.3
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchh
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSV 1444 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti 1444 (1496)
+++|+++|| ...++..+...+.+.+.+.-.++.+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhC
Confidence 567999999 56788888888888888765666777888776544
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0004 Score=75.52 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=37.1
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-CccEE----------EECCeeCCCCChHHHhcc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-AAGQI----------LIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-~~G~I----------~IDG~dI~~i~l~~LR~~ 1322 (1496)
...+|..++|+|++||||||+.+.|...++. ..+.+ .+||.|..-++.+.++..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~ 72 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK 72 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHH
Confidence 3568999999999999999999999887642 11211 235655555566665543
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0025 Score=74.34 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=29.8
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
.|+++.--+++|+.+-|.||+|+|||||+.-+..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5777776689999999999999999999988764
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0028 Score=73.95 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=24.7
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCCCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVPKI 673 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~~~ 673 (1496)
++..+.|.||+|+|||||++++.+++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34679999999999999999999877543
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.001 Score=69.84 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1308 (1496)
.|+.|+|+|++||||||+++.|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 56765
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0014 Score=67.61 Aligned_cols=30 Identities=43% Similarity=0.550 Sum_probs=25.0
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHh
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~il 667 (1496)
++..+++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455666665 99999999999999999986
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.012 Score=61.02 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999653
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0021 Score=70.52 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=34.9
Q ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhc
Q 039402 1399 KRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVI 1445 (1496)
Q Consensus 1399 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~ 1445 (1496)
.++.+|++||+-. +|.+....+.+.+.+.-.++.+|+++++...+.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 3578999999875 788777778888866545678888888876543
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.00061 Score=74.51 Aligned_cols=42 Identities=26% Similarity=0.192 Sum_probs=37.4
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCcc--EEEECCe
Q 039402 1268 CTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG--QILIDGI 1309 (1496)
Q Consensus 1268 ~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G--~I~IDG~ 1309 (1496)
..+++|..|.|+|.+||||||+.+.|.+.+.|..| .+.+||-
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 44678999999999999999999999999988888 8888853
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.011 Score=62.85 Aligned_cols=40 Identities=25% Similarity=0.442 Sum_probs=33.7
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEE-EECC
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI-LIDG 1308 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I-~IDG 1308 (1496)
..++|..|.|+|.+||||||+.+.|.+.+.+.+|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345789999999999999999999999988777765 4554
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0004 Score=81.99 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=40.7
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL 679 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~ 679 (1496)
.+++++++.+++|.+++|+|++|+|||||++.|+|.+.+..|+|.+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 4678889999999999999999999999999999998877766544
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0015 Score=75.67 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=23.3
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
++.+++|+|++|+|||||++.|+|.-
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 44589999999999999999999974
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0013 Score=72.96 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=32.9
Q ss_pred ceeeeEEee---CCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 039402 1263 LQGISCTFP---GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308 (1496)
Q Consensus 1263 Lk~iS~~I~---~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1308 (1496)
|.++++++. +|..|.|.|++||||||+++.|...+.+ .+.+....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 556666665 8999999999999999999999999987 66665543
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0031 Score=68.06 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCC
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPA 1300 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~ 1300 (1496)
.-+.|.|++|+|||||++++.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 678999999999999999999876543
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0009 Score=72.25 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=31.9
Q ss_pred ecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcC
Q 039402 627 WDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 627 ~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
|.+++-..+++++++..+++ .++++|++|+|||||++.+.+.
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 7 WIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp ------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 33334456899999988887 5899999999999999999873
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0012 Score=69.26 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=25.0
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVPK 672 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~~ 672 (1496)
.|++++|+|++||||||+++.|.+.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999999997653
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0011 Score=71.62 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=23.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCCCC
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVPKI 673 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~~~ 673 (1496)
..+.|.||+|+|||||++++..+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 679999999999999999999877544
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0039 Score=72.75 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccCC
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEP 1299 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl~ep 1299 (1496)
+.-+.|.|++|+|||||++++.+...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 467899999999999999999987654
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0019 Score=77.14 Aligned_cols=41 Identities=29% Similarity=0.459 Sum_probs=34.7
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcc-----------cCCCccEEEECCe
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRI-----------VEPAAGQILIDGI 1309 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl-----------~ep~~G~I~IDG~ 1309 (1496)
.++.|.++||||++|+|||||+++|.+. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567899999999999999999999998 7788899888763
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0016 Score=72.32 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=30.4
Q ss_pred ceeeeeEEEe---CCcEEEEEecCCCcHHHHHHHHhcCCCCCccEE
Q 039402 635 TLKDINLKVF---HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677 (1496)
Q Consensus 635 ~L~~i~l~i~---~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i 677 (1496)
-|.++|+.+. +|.+++|.|++||||||+++.|...+.+ .+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 3566666665 8999999999999999999999999887 5554
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0044 Score=71.56 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCCccEE
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I 1304 (1496)
..+.++|++|+||||++++|.+...+.+|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5788999999999999999999987766643
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0032 Score=73.62 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=24.8
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
-+++|+.+-|.|++|+|||||+..+..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988775
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.003 Score=69.62 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEP 1299 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep 1299 (1496)
++..+.|+|++|+|||||++.+.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999887653
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0039 Score=64.88 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
-+|+|+|++|+|||||++.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.019 Score=67.90 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=26.1
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+++|+++.|.|++|+|||||...++....
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999988876654
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0014 Score=69.57 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.0
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 675 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G 675 (1496)
++|++++|+|++||||||+.+.|.+.+++ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 47999999999999999999999997755 45
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0048 Score=68.00 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=24.9
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVPK 672 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~~ 672 (1496)
++..+.|+||+|+|||||++.+..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999887653
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.00044 Score=74.64 Aligned_cols=67 Identities=19% Similarity=0.306 Sum_probs=36.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc------ccCCCccEEEECCe--eCCCCCh--------HHHhcccEEEcccccccccchh
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR------IVEPAAGQILIDGI--DISLIGL--------HDLRSRLSIIPQDPVMFEGTVR 1338 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r------l~ep~~G~I~IDG~--dI~~i~l--------~~LR~~i~iIpQdp~LF~gTIR 1338 (1496)
.|+|+|.+||||||+.+.|.+ +.+|..|...++.. |....+. ..++.....+.|+.++++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999988 44555444333221 1100110 0023333456677777887777
Q ss_pred hcc
Q 039402 1339 SNL 1341 (1496)
Q Consensus 1339 ~NL 1341 (1496)
+|+
T Consensus 82 ~~~ 84 (205)
T 2jaq_A 82 EDP 84 (205)
T ss_dssp THH
T ss_pred hhH
Confidence 654
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0016 Score=77.19 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=31.4
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL 679 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~ 679 (1496)
+++..++|+|++|||||||++.|+|...+.+|+|.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 356799999999999999999999998888776655
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0032 Score=64.96 Aligned_cols=31 Identities=32% Similarity=0.580 Sum_probs=24.9
Q ss_pred eeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1264 QGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1264 k~iS~~I~~GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
++.++++.+| ..+|+|+|||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3445666655 889999999999999999863
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.014 Score=67.48 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=30.8
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEEC
Q 039402 1268 CTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID 1307 (1496)
Q Consensus 1268 ~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ID 1307 (1496)
+.++++..+.|.|++|+|||||++++.+... .+-+.++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 4568899999999999999999999998763 3445444
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0033 Score=66.63 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
-+|+++|++|+|||||++.|.+-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999984
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.014 Score=66.52 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=24.6
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
++++..+-|.|++|+|||||++++.+..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999998865
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.00087 Score=79.72 Aligned_cols=58 Identities=29% Similarity=0.328 Sum_probs=36.7
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1308 (1496)
.|.|.|+|+...|.. ..++++++|+| +|||++|+|||||++.|++.-.+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 477999999988864 34889999866 99999999999999999987665555544333
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.013 Score=66.80 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.4
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+++.-+.|.||+|+|||||++++..++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566799999999999999999998763
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0071 Score=63.53 Aligned_cols=27 Identities=44% Similarity=0.744 Sum_probs=23.6
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
++|..++|+|++|+|||||++.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999875
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0093 Score=73.19 Aligned_cols=115 Identities=25% Similarity=0.287 Sum_probs=59.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHh
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEI 727 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~ 727 (1496)
.++|+|++|+|||||++.|+|. +.+.+.+.| ++-++....-...
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~------------~~~~v~~~~----g~t~~~~~~~~~~-------------------- 68 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE------------RISIVEDTP----GVTRDRIYSSAEW-------------------- 68 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE------------EEC---------------CEEEECTT--------------------
T ss_pred EEEEECCCCCcHHHHHHHHhCC------------CCcccCCCC----CcceeEEEEEEEE--------------------
Confidence 7999999999999999999873 222333333 2222211110000
Q ss_pred ccCCCcccccCCCCC--CChHHHHHHHHHHHHccCCCEEEEecCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcC
Q 039402 728 LSFGDQTVIGERGIN--LSGGQKQRIQIARALYQDSDIYLFDDPF-SAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVE 803 (1496)
Q Consensus 728 l~~g~~t~ig~~g~~--LSGGQkqRv~LARAl~~~~~illLDep~-saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~ 803 (1496)
....-+.++-.|.. -.+.|++-...++..+.++|++|+.-.. .++.+.. .++.+. +. ..++.+|+|.+..+
T Consensus 69 -~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~-l~--~~~~pvilV~NK~D 142 (456)
T 4dcu_A 69 -LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKI-LY--RTKKPVVLAVNKLD 142 (456)
T ss_dssp -CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHH-HT--TCCSCEEEEEECC-
T ss_pred -CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHH-HH--HcCCCEEEEEECcc
Confidence 00011222222221 2234888888999999999987776443 3454433 333322 21 24778888877664
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0047 Score=66.00 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=21.2
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcC
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
.+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999998887 7899999999999999999973
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.012 Score=68.11 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=26.9
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
.++++..+.|.||+|+|||||++++.++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 457788999999999999999999999874
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.02 Score=58.42 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPA 1300 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~ 1300 (1496)
.+.-|-|.|++|+|||++++++.......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 44568899999999999999998876543
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.015 Score=71.08 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=66.7
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHH
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYN 713 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~ 713 (1496)
+.|+.+.--+++|+++.|.|++|+|||||+..++.......| ..+.|++ .+++.+...
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-----~~vl~~s-----------------lE~~~~~l~ 245 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-----VGVGIYS-----------------LEMPAAQLT 245 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCEEEEE-----------------SSSCHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-----CeEEEEE-----------------CCCCHHHHH
Confidence 346666545899999999999999999999888775543222 1233332 234444333
Q ss_pred HHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCC
Q 039402 714 AVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSA 772 (1496)
Q Consensus 714 ~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~sa 772 (1496)
.-+.+....-+...+ +-..|+..+.+|+.-|...+.+.++++.|+|...
T Consensus 246 ~R~~~~~~~i~~~~l----------~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s 294 (444)
T 2q6t_A 246 LRMMCSEARIDMNRV----------RLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLT 294 (444)
T ss_dssp HHHHHHHTTCCTTTC----------CGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCB
T ss_pred HHHHHHHcCCCHHHH----------hCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCC
Confidence 222111111111111 1136999999999988887888899998876443
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0016 Score=71.21 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=34.3
Q ss_pred EEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc--EEEEc
Q 039402 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG--TLKLC 680 (1496)
Q Consensus 641 l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G--~i~~~ 680 (1496)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 44678999999999999999999999998887777 55554
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.016 Score=70.59 Aligned_cols=105 Identities=11% Similarity=0.082 Sum_probs=61.2
Q ss_pred ceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHH
Q 039402 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNA 714 (1496)
Q Consensus 635 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~ 714 (1496)
-|+.+.=-+++|+++.|.|++|+|||||+.-++...-.. | ..+.|++= ++..++...
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g-----~~vl~fSl-----------------Ems~~ql~~ 242 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D-----DVVNLHSL-----------------EMGKKENIK 242 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T-----CEEEEECS-----------------SSCTTHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C-----CEEEEEEC-----------------CCCHHHHHH
Confidence 344443247999999999999999999987776543221 2 23444432 233222222
Q ss_pred HHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCC
Q 039402 715 VLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPF 770 (1496)
Q Consensus 715 v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~ 770 (1496)
-+.+....-++..+..|. ..|+..+.+|+.-|...+.+.++++.|+|.
T Consensus 243 R~~~~~~~i~~~~l~~g~--------~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~ 290 (444)
T 3bgw_A 243 RLIVTAGSINAQKIKAAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAG 290 (444)
T ss_dssp HHHHHHSCCCHHHHHHTG--------GGTCCSCHHHHHHHHHHHHTSCEEEECCSS
T ss_pred HHHHHHcCCCHHHHhccc--------CCCCHHHHHHHHHHHHHHhcCCEEEECCCC
Confidence 221111111222221111 137788888888888777788898888774
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.011 Score=65.64 Aligned_cols=126 Identities=11% Similarity=0.126 Sum_probs=62.4
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccC-CCcHHHHhccCCCCCHHHHHHHHHHhch
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ-SGKIEDNILFGKEMNRERYNAVLDACSL 721 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~-~~ti~eNI~~g~~~~~~~~~~v~~~~~l 721 (1496)
+.+|+.++++||+||||||++..++.+.....|. ......+.|.|-.. ..++.+|+....... +-..++.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~~~~~~~~------~~~~~g~ 143 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERVAFERGEE------PGKSCGY 143 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHHHHTTTCC------TTSSEEE
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHHHHHhccc------cCceEEE
Confidence 3568999999999999999887776443222221 12234455555321 123444442111000 0000000
Q ss_pred hhHHHhccCCCccccc---CCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHH
Q 039402 722 KKDLEILSFGDQTVIG---ERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS-AVDAHTGSHLFQEVL 786 (1496)
Q Consensus 722 ~~d~~~l~~g~~t~ig---~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s-aLD~~~~~~i~~~~~ 786 (1496)
.. ..+.... .+..-.+.|+-.+.. +.-.++-+++++||+=. ++|........+.+.
T Consensus 144 ~~-------~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~ 203 (235)
T 3llm_A 144 SV-------RFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVV 203 (235)
T ss_dssp EE-------TTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred ee-------chhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHH
Confidence 00 0000000 001123456666653 33588999999999975 466655433434433
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.006 Score=66.34 Aligned_cols=30 Identities=43% Similarity=0.550 Sum_probs=24.7
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHh
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~il 667 (1496)
++.++++.+| +++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455666665 99999999999999999885
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0051 Score=65.59 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=26.7
Q ss_pred eeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 039402 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1265 ~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
++|++.++|.+|+|+|.+||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999876
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0056 Score=64.88 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=30.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCC---ccEEEECCee
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPA---AGQILIDGID 1310 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~---~G~I~IDG~d 1310 (1496)
..++|+|++|||||||++.|.+.+.+. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 579999999999999999999886543 3778887654
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.013 Score=67.47 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=27.3
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCCCCCccEE
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i 677 (1496)
...+.++||+|+||||++++|.+.+.+..|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35799999999999999999999887766643
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.065 Score=64.83 Aligned_cols=41 Identities=24% Similarity=0.197 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS 1312 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~ 1312 (1496)
++..|.++|++|+||||++..|.+.+....-++.+=..|..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 35689999999999999999999888765556655334443
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0091 Score=70.54 Aligned_cols=36 Identities=42% Similarity=0.652 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc-----------ccCCCccEEEECC
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFR-----------IVEPAAGQILIDG 1308 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~r-----------l~ep~~G~I~IDG 1308 (1496)
|-++||||++|+|||||+++|.+ ..+|..|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 5578888888776
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.006 Score=65.01 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=26.4
Q ss_pred eeeEEEeCCcEEEEEecCCCcHHHHHHHHhcC
Q 039402 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 638 ~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999865
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.015 Score=71.07 Aligned_cols=37 Identities=30% Similarity=0.510 Sum_probs=30.5
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCC------------CCccEEEEcCee
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVP------------KISGTLKLCGTK 683 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~------------~~~G~i~~~g~~ 683 (1496)
-.++|+|++|+|||||++.|+|+.. +.+|.+.++|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 3799999999999999999999853 566777777753
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0072 Score=72.11 Aligned_cols=28 Identities=14% Similarity=0.398 Sum_probs=24.7
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcC
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
.+..|..++|+|++|+|||||+++|.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4567889999999999999999999997
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0055 Score=66.46 Aligned_cols=30 Identities=33% Similarity=0.616 Sum_probs=26.4
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
...+|.+++|+||+|||||||.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998774
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.028 Score=65.55 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=25.2
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcC
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
-+++|+++.|.|++|||||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999888754
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.014 Score=62.04 Aligned_cols=35 Identities=43% Similarity=0.728 Sum_probs=27.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc-----cCCCcc----EEEECCe
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI-----VEPAAG----QILIDGI 1309 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl-----~ep~~G----~I~IDG~ 1309 (1496)
||+|+|++|+|||||++.+.+- +.|+.| .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 8999999999999999876653 556666 5666664
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0052 Score=65.49 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=30.2
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEE
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i 677 (1496)
.++|.+++|+|++||||||+.+.|.+.+.+..|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 45789999999999999999999999887665554
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.034 Score=59.87 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=32.6
Q ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchh
Q 039402 1399 KRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSV 1444 (1496)
Q Consensus 1399 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti 1444 (1496)
.++.+|++||+- .++.+..+.+.+.+.+...++.+|+++.+...+
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~ 145 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVSRI 145 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhc
Confidence 367899999975 466777777888887755567777777776543
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0096 Score=63.08 Aligned_cols=25 Identities=52% Similarity=0.732 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCC
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEP 1299 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep 1299 (1496)
||+|||++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 7999999999999999999987543
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.02 Score=62.98 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCc----------ch-hcccCEEEEEe
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRI----------TS-VIDSDLVLLLN 1454 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl----------~t-i~~~DrIlVL~ 1454 (1496)
+++++++||+-- ++.+.-+.+.. +.. .+.+||++.|+. .. +.-||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l~~-L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVANI-LAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHHHH-HHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHHHH-HHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 578999999964 66543333322 333 388999999931 22 33488888764
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.044 Score=66.90 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=31.3
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
-|+.+.--+++|+.+.|.||+|+|||||+.-+..-..
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4666665689999999999999999999988877554
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0064 Score=65.66 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeC
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI 1311 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI 1311 (1496)
...|+|+|++||||||+.+.|.+.+ |...+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4579999999999999999998876 5666765443
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.095 Score=62.11 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=25.1
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
-+++|+.+-|.|+.|+|||||+..+..-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 47999999999999999999998776543
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.057 Score=63.81 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=32.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeC
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI 1311 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI 1311 (1496)
.+|.-+-|.|++|+||||+++++.+.......-+.+++..+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 108 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhh
Confidence 45678999999999999999999998764445556655443
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=94.99 E-value=0.011 Score=71.00 Aligned_cols=57 Identities=21% Similarity=0.384 Sum_probs=43.8
Q ss_pred CCCEEEEEcCCCCCC---HHHHHHHHHHHHHhcC-CcEEEEEccCcchhc-------------ccCEEEEEeCC
Q 039402 1400 RSKILMLDEATASVD---TATDNLIQQTLRQHFS-DCTVLTIAHRITSVI-------------DSDLVLLLNHG 1456 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD---~~Td~~Iq~~I~~~f~-~~TVI~IAHRl~ti~-------------~~DrIlVL~~G 1456 (1496)
+|.++++||+=.-++ +...+.+.+.+++..+ +..+++++|+++.+. +|+..++|...
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 578999999987774 6677778888877654 788999999997653 46777777654
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.041 Score=65.12 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=25.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCC
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEP 1299 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep 1299 (1496)
..+..+.|.|++|+||||+++.+.+....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999987643
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.012 Score=62.13 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
=+|+|+|++|+|||||++.|.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999875
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.007 Score=68.10 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=33.8
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeC
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI 1311 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI 1311 (1496)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 456778999999999999999999998764 36788887544
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.018 Score=60.70 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
.++++|++|+|||||++.+.|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.0073 Score=70.10 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.5
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+.-+.+.||+|+|||+|+++|..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987665
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.014 Score=63.00 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
+|||+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.032 Score=64.39 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=25.2
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcC
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
-+++|..+.|.||.|+|||||...++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5788999999999999999999998764
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=94.78 E-value=0.0043 Score=71.57 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=34.1
Q ss_pred eeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE
Q 039402 639 INLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL 679 (1496)
Q Consensus 639 i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~ 679 (1496)
++++.+ |++++++|++|+||||++..|++.+.+..|+|.+
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 566665 9999999999999999999999999877666654
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.017 Score=62.79 Aligned_cols=29 Identities=34% Similarity=0.641 Sum_probs=23.7
Q ss_pred eeeEEeeCCcEEEEEcCCCCCHHHHHHHHh
Q 039402 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLF 1294 (1496)
Q Consensus 1265 ~iS~~I~~GekvgIVGrTGSGKSTLl~~L~ 1294 (1496)
+.++.+.+| ...|+|+|||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445666654 88999999999999999884
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.041 Score=65.19 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=25.0
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPK 672 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~ 672 (1496)
..+..+.|.||+|+|||||++.+...+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45668999999999999999999987643
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.11 Score=61.51 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
++..-+.|.|++|+|||||++++.+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999998764
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.043 Score=63.38 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=25.3
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1268 CTFPGGEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1268 ~~I~~GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
--+++|..+-|.|+.|+|||||...+..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999999875
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.017 Score=61.17 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPKI 673 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~~ 673 (1496)
.++|+|++|+|||||++.+.|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.016 Score=62.57 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.015 Score=62.29 Aligned_cols=46 Identities=35% Similarity=0.686 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHhccc-------------CCCccEEEECCeeCCCCChHHHhccc
Q 039402 1276 TGIVGRTGSGKSTLIQTLFRIV-------------EPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1276 vgIVGrTGSGKSTLl~~L~rl~-------------ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
|.|+||||||||||++.|..-. +|..|++ ||+|.--++.++..+.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~i 62 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI 62 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHHH
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.019 Score=61.71 Aligned_cols=32 Identities=38% Similarity=0.378 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCee
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGID 1310 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~d 1310 (1496)
..|+|+|++||||||+.+.|.+. |-..||.-+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 57999999999999999999985 777777543
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.14 Score=71.18 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=31.7
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccE-EEECC
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ-ILIDG 1308 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~-I~IDG 1308 (1496)
-+++|+.|-|.||+|+|||||+..+..-.....|. +++++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 38999999999999999999999998766544443 34454
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.18 Score=56.15 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
+..-+-|.|++|+||||+++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34558899999999999999998754
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.0075 Score=70.64 Aligned_cols=37 Identities=35% Similarity=0.460 Sum_probs=33.7
Q ss_pred ccceeeeEEeeCCcE--EEEEcCCCCCHHHHHHHHhccc
Q 039402 1261 LVLQGISCTFPGGEK--TGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1261 ~vLk~iS~~I~~Gek--vgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.+++++++.+++|++ ++|+|+.||||||+.++|.+.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478899999999999 9999999999999999998864
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.21 Score=58.17 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.3
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+..-+.+.||.|+|||+|++++..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 44578999999999999999999886
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.012 Score=66.05 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=29.5
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g 681 (1496)
..+++.++.++|++||||||+.+.|.+.+. .|.+.+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 345678999999999999999999998765 23444443
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.05 Score=56.59 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcc
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
++.-+|+|+|++|+|||||++.|.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999863
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=94.04 E-value=0.015 Score=61.63 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCCCC
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVPKI 673 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~~~ 673 (1496)
..++|+|++|||||||++.|++.+++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 589999999999999999999986543
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=94.04 E-value=0.033 Score=64.28 Aligned_cols=46 Identities=26% Similarity=0.281 Sum_probs=36.0
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc----ccCCCccEEEECC
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR----IVEPAAGQILIDG 1308 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~r----l~ep~~G~I~IDG 1308 (1496)
++++..+.+ .|.-+.|+|+||+||||++..|.+ ++..+...|...|
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 677877777 788999999999999999999987 5544545555443
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.15 Score=60.33 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.5
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
++..-+.|.||+|+|||||++++..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345679999999999999999999875
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.024 Score=60.07 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.8
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
.+|.+++++|++||||||+.+.|...
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999754
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.17 Score=56.44 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.9
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
..-+.|.||+|+||||+++++..+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999998865
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.03 Score=60.01 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
||+|||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999999754
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.023 Score=60.18 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.+|..|+|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1496 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-69 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-58 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-66 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-54 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-65 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-56 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-62 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-47 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-59 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-51 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 8e-57 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-49 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 8e-33 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-32 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-30 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 8e-32 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 5e-25 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-31 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-31 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-29 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-28 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-24 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-26 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-26 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-25 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-26 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-26 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 8e-24 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 5e-26 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-25 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-24 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-21 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-24 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-23 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-23 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-21 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-13 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 5e-10 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 7e-07 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-06 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 7e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.003 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 230 bits (589), Expect = 4e-69
Identities = 75/258 (29%), Positives = 135/258 (52%), Gaps = 12/258 (4%)
Query: 1224 PSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTG 1283
P+ I++ G+ID+ + +Y +L+ I+ + GE VG +G
Sbjct: 5 VGAQPIEIKQ----------GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSG 54
Query: 1284 SGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL-D 1342
GKSTLI + R + +GQILIDG +I LR+++ ++ QD ++F TV+ N+
Sbjct: 55 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL 114
Query: 1343 PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402
+TDE++ EA D + D++V E G S GQ+Q + + R+ L
Sbjct: 115 GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 174
Query: 1403 ILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFD 1462
IL+LDEAT+++D ++++IQ+ L D T L +AHR++++ +D ++++ +G I E
Sbjct: 175 ILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 234
Query: 1463 NPANLLENKSSSFSQLVA 1480
L+ + ++ L +
Sbjct: 235 THRELIAKQ-GAYEHLYS 251
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 199 bits (508), Expect = 3e-58
Identities = 75/250 (30%), Positives = 117/250 (46%), Gaps = 16/250 (6%)
Query: 604 DLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLL 663
+ V QP + +DI +F ++ + P LKDINL + G VA G G GKS+L+
Sbjct: 3 NGVGAQPIEIKQGRIDIDHVSFQYN-DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLI 61
Query: 664 SCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFGKEM-NR 709
+ I SG + + G V Q + S +++NIL G+
Sbjct: 62 NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD 121
Query: 710 ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDP 769
E + + L G T +GERG+ LSGGQKQR+ IAR + I + D+
Sbjct: 122 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA 181
Query: 770 FSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI 829
SA+D + S + QE L L +T + V H++ + AD I+V+++G I + G + +LI
Sbjct: 182 TSALDLESESII-QEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 240
Query: 830 NSGTDFMELV 839
+ L
Sbjct: 241 AKQGAYEHLY 250
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 223 bits (570), Expect = 3e-66
Identities = 92/262 (35%), Positives = 152/262 (58%), Gaps = 4/262 (1%)
Query: 585 TKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGN--FSWDISSHNPTLKDINLK 642
T + ++ + +F+ ++ +L+EK + + + N FS NP LK+INL
Sbjct: 1 TGIIMENVTAFW--EEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLN 58
Query: 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNIL 702
+ G +A+ G+ GSGK+SLL ILGE+ G +K G ++ +Q WI G I++NI+
Sbjct: 59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENII 118
Query: 703 FGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762
FG + RY +V+ AC L++D+ + D TV+GE G+ LSGGQ+ RI +ARA+Y+D+D
Sbjct: 119 FGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178
Query: 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQA 822
+YL D PF +D T +F+ + L+++KT I VT ++E L AD IL++ G
Sbjct: 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFY 238
Query: 823 GKYNDLINSGTDFMELVGAHEQ 844
G +++L + DF + ++
Sbjct: 239 GTFSELQSLRPDFSSKLMGYDT 260
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 189 bits (481), Expect = 2e-54
Identities = 54/275 (19%), Positives = 110/275 (40%), Gaps = 23/275 (8%)
Query: 1207 LENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGI 1266
+EN E F + + + + + L + P VL+ I
Sbjct: 5 MENVTAFWEEGFGE--LLEKVQ---QSNGDRKHSSDENNVSFSHLCLVGNP----VLKNI 55
Query: 1267 SCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSII 1326
+ GE I G TGSGK++L+ + +E + G I G R+S
Sbjct: 56 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFC 102
Query: 1327 PQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1386
Q + GT++ N+ + + + CQL ++ K + ++ + E G S G
Sbjct: 103 SQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGG 162
Query: 1387 QRQLVCLGRVLLKRSKILMLDEATASVDTAT-DNLIQQTLRQHFSDCTVLTIAHRITSVI 1445
QR + L R + K + + +LD +D T + + + + + ++ T + + ++ +
Sbjct: 163 QRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR 222
Query: 1446 DSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVA 1480
+D +L+L+ G + + L + S+L+
Sbjct: 223 KADKILILHQGSSYFYGTFSELQSLRPDFSSKLMG 257
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 220 bits (561), Expect = 2e-65
Identities = 79/238 (33%), Positives = 133/238 (55%), Gaps = 3/238 (1%)
Query: 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1303
G ++ ++ Y + L+ I+ P G+ +VGR+GSGKST+ + R + G
Sbjct: 12 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 1304 ILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSN--LDPLEESTDEQIWEALDKCQL 1361
IL+DG D+ L LR++++++ Q+ +F TV +N EE + EQI EA
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 131
Query: 1362 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI 1421
D + K + LD+ + ENG S GQRQ + + R LL+ S IL+LDEAT+++DT ++ I
Sbjct: 132 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 1422 QQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLV 1479
Q L + + T L IAHR++++ +D ++++ G+I E + LL + ++QL
Sbjct: 192 QAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVYAQLH 248
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 193 bits (493), Expect = 3e-56
Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 17/238 (7%)
Query: 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676
L+ + F++ P L++INLK+ G VA+ G GSGKS++ S I G
Sbjct: 13 DLEFRNVTFTYP-GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 677 LKLCGTK-------------AYVAQSPWIQSGKIEDNILFG--KEMNRERYNAVLDACSL 721
+ + G A V+Q+ + + + +NI + +E +RE+
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 131
Query: 722 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL 781
+ + G T+IGE G+ LSGGQ+QRI IARAL +DS I + D+ SA+D + +
Sbjct: 132 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 782 FQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELV 839
Q L L ++T + + H++ + AD I+V++DG I + G +++L+ + +L
Sbjct: 192 -QAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLH 248
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 210 bits (535), Expect = 5e-62
Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 1/235 (0%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
I +++ RY P P++L I+ + GE GIVGR+GSGKSTL + + R P GQ+L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL-DPLEESTDEQIWEALDKCQLGDE 1364
IDG D++L + LR ++ ++ QD V+ ++ N+ + E++ A D
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1365 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424
+ + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I +
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1425 LRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLV 1479
+ + TV+ IAHR+++V ++D ++++ G I E LL S +S L
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 168 bits (427), Expect = 1e-47
Identities = 66/231 (28%), Positives = 105/231 (45%), Gaps = 17/231 (7%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK 683
F + L +INL + G + + G GSGKS+L I +G + + G
Sbjct: 8 RFRYK-PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD 66
Query: 684 -------------AYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILS 729
V Q + + I DNI M+ E+ + L
Sbjct: 67 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 126
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789
G T++GE+G LSGGQ+QRI IARAL + I +FD+ SA+D + H+ + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES-EHVIMRNMHKI 185
Query: 790 LSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI-NSGTDFMELV 839
+TVI + H++ + AD I+VM+ GKI + GK+ +L+ + + L
Sbjct: 186 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 203 bits (517), Expect = 1e-59
Identities = 72/245 (29%), Positives = 120/245 (48%), Gaps = 6/245 (2%)
Query: 1240 WPSHGKIDLLDLQVRYAPQM-PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE 1298
G + D+ Y + LVLQG++ T GE T +VG GSGKST+ L + +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 1299 PAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL--DPLEESTDEQIWEAL 1356
P GQ+L+DG + L +++ + Q+P +F +++ N+ ++ T E+I A
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 1357 DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA 1416
K + D++V E G S GQRQ V L R L+++ +L+LD+AT+++D
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 1417 TDNLIQQTLR--QHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSS 1474
+ ++Q L +VL I ++ V +D +L L G I E L+E K
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK-GC 244
Query: 1475 FSQLV 1479
+ +V
Sbjct: 245 YWAMV 249
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 179 bits (455), Expect = 3e-51
Identities = 59/236 (25%), Positives = 101/236 (42%), Gaps = 16/236 (6%)
Query: 622 DGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681
D +F++ L+ + + G A+ G GSGKS++ + + G L L G
Sbjct: 16 DVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDG 75
Query: 682 TK-------------AYVAQSPWIQSGKIEDNILFGKEMN--RERYNAVLDACSLKKDLE 726
A V Q P + +++NI +G E A +
Sbjct: 76 KPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFIS 135
Query: 727 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786
L G T + E G LSGGQ+Q + +ARAL + + + DD SA+DA++ + Q +
Sbjct: 136 GLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLY 195
Query: 787 -LGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGA 841
S++V+ +T + + AD IL ++ G I + G + L+ + +V A
Sbjct: 196 ESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQA 251
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 195 bits (496), Expect = 8e-57
Identities = 76/238 (31%), Positives = 121/238 (50%), Gaps = 4/238 (1%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
+ + Y +L+ IS G +G GKST+ L R +P AG+I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD--PLEESTDEQIWEALDKCQLGD 1363
IDG I I L + RS++ + QD + GT+R NL + TDE +W+ LD
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1364 EVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQ 1423
V +L+++V E G S GQRQ + + R L+ KILMLDEATAS+D+ +++++Q+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 1424 TLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481
L T L IAHR+++++D+D + + G I L+ +++ V+E
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 173 bits (440), Expect = 2e-49
Identities = 62/232 (26%), Positives = 117/232 (50%), Gaps = 18/232 (7%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK 683
+F++D L+DI+ + +A G G GKS++ S + +G + + G
Sbjct: 8 DFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65
Query: 684 -------------AYVAQSPWIQSGKIEDNILFGKE--MNRERYNAVLDACSLKKDLEIL 728
+V+Q I +G I +N+ +G E E VLD + +E +
Sbjct: 66 IDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 729 SFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLG 788
T +GERG+ +SGGQ+QR+ IARA ++ I + D+ +++D+ + S + Q+ L
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV-QKALDS 184
Query: 789 LLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVG 840
L+ +T + + H++ + AD I ++ G+IT +GK+N+L+ + + + V
Sbjct: 185 LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 126 bits (318), Expect = 8e-33
Identities = 62/259 (23%), Positives = 112/259 (43%), Gaps = 40/259 (15%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304
K+ ++DL RY VL+G+S G+ I+G +GSGKST ++ + + +P+ G I
Sbjct: 2 KLHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 1305 LIDGIDISLIGLHD-------------LRSRLSIIPQDP-----------VMFEGTVRSN 1340
+++G +I+L+ D LR+RL+++ Q VM
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 1341 LDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1400
L + E+ + L K + + + K + S GQ+Q V + R L
Sbjct: 120 LSKHDA--RERALKYLAKVGIDERAQGKYPV----------HLSGGQQQRVSIARALAME 167
Query: 1401 SKILMLDEATASVD-TATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLI 1458
+L+ DE T+++D +++ + T++ + H + S V+ L+ G I
Sbjct: 168 PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227
Query: 1459 EEFDNPANLLENKSSSFSQ 1477
EE +P + N S Q
Sbjct: 228 EEEGDPEQVFGNPQSPRLQ 246
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 107 bits (269), Expect = 2e-26
Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 46/232 (19%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
LK ++L+ G +++ G+ GSGKS+ L CI G + + G
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 684 --------------AYVAQSP-WIQSGKIEDNILFG--------KEMNRERYNAVLDACS 720
V Q + +N++ K RER L
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVG 137
Query: 721 LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSH 780
+ + + G+ ++LSGGQ+QR+ IARAL + D+ LFD+P SA+D
Sbjct: 138 IDERAQ----------GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 187
Query: 781 LFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831
+ + + KT++ VTH++ F + ++ + GKI + G + +
Sbjct: 188 VLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 239
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 124 bits (313), Expect = 2e-32
Identities = 48/244 (19%), Positives = 107/244 (43%), Gaps = 26/244 (10%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304
++ L +L R+ + ++ T GE ++G +G GK+T ++ + + EP G+I
Sbjct: 6 EVKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 1305 LIDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLD-PLE------ESTDEQIWEAL 1356
D++ L +S++ Q ++ TV N+ PL+ + D+++ A
Sbjct: 64 YFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 1357 DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA 1416
+ Q+ + + + +L S GQRQ V + R ++ +L++DE +++D
Sbjct: 122 ELLQIEELLNRYPAQL-----------SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170
Query: 1417 TDNLIQQTLR--QHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473
++ ++ Q T + + H + D + ++N G + + +P + +S
Sbjct: 171 LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 230
Query: 1474 SFSQ 1477
F
Sbjct: 231 VFVA 234
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 119 bits (299), Expect = 2e-30
Identities = 52/216 (24%), Positives = 84/216 (38%), Gaps = 32/216 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-----------A 684
+ +NL + G + + G G GK++ L I G G + +
Sbjct: 22 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 81
Query: 685 YVAQSPWIQSG-KIEDNILFG-------KEMNRERYNAVLDACSLKKDLEILSFGDQTVI 736
V QS + + +NI F K+ +R + +++ L
Sbjct: 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN---------- 131
Query: 737 GERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-LGLLSSKTV 795
LSGGQ+QR+ +ARA+ + D+ L D+P S +DA + E+ L T
Sbjct: 132 -RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 190
Query: 796 IYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830
IYVTH D I VM G++ Q G ++
Sbjct: 191 IYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 123 bits (309), Expect = 8e-32
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 27/248 (10%)
Query: 1246 IDLLDLQVRYAPQMPLV--LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1303
I L ++ + + L +S P G+ G++G +G+GKSTLI+ + + P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1304 ILIDGIDISLIGLHD---LRSRLSIIPQDPVMF-EGTVRSNLD-PLE------ESTDEQI 1352
+L+DG +++ + + R ++ +I Q + TV N+ PLE + ++
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1353 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATAS 1412
E L LGD+ L S GQ+Q V + R L K+L+ DEAT++
Sbjct: 122 TELLSLVGLGDKHDSYPSNL-----------SGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 1413 VDTATDNLIQQTLR--QHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469
+D AT I + L+ T+L I H + V D V ++++G + E D + +
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 1470 NKSSSFSQ 1477
+ + +Q
Sbjct: 231 HPKTPLAQ 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 103 bits (258), Expect = 5e-25
Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 37/222 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L +++L V G V G G+GKS+L+ C+ G++ + G +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 684 ----AYVAQSP-WIQSGKIEDNILFG-------KEMNRERYNAVLDACSLKKDLEILSFG 731
+ Q + S + N+ K+ + R +L L +
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD----- 135
Query: 732 DQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-LGLL 790
NLSGGQKQR+ IARAL + + L D+ SA+D T + + + +
Sbjct: 136 ------SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR 189
Query: 791 SSKTVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDLINS 831
T++ +TH+++ D + V+ +G++ + +++ +
Sbjct: 190 LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 120 bits (303), Expect = 4e-31
Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 21/209 (10%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
LK++NL + G V++ G GSGKS++L+ I G + + K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 684 -----AYVAQSPW-IQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIG 737
+V Q I +N+ + + + ++ ++
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 738 ERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS--KTV 795
+ LSGGQ+QR+ IARAL + I L D P A+D+ TG + ++L L KTV
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKI-MQLLKKLNEEDGKTV 199
Query: 796 IYVTHQVEFLPAADLILVMKDGKITQAGK 824
+ VTH + + I+ +KDG++ + K
Sbjct: 200 VVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 119 bits (301), Expect = 6e-31
Identities = 48/224 (21%), Positives = 92/224 (41%), Gaps = 9/224 (4%)
Query: 1246 IDLLDLQVRYAP--QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1303
I L ++ Y ++ L+ ++ GE I+G +GSGKST++ + + +P G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1304 ILIDGIDISLIGLHDL----RSRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDK 1358
+ ID I + + +L R ++ + Q + T N++ ++
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1359 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD 1418
+ E K + S GQ+Q V + R L I++ D+ T ++D+ T
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 1419 NLIQQTLR--QHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEE 1460
I Q L+ TV+ + H I + ++ L G +E
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 116 bits (292), Expect = 1e-29
Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 22/220 (10%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321
L +S GE +VG G+GKSTL+ + + G I G + L
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLAL 72
Query: 1322 RLSIIPQDPVM-FEGTVRSNL-DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1379
+ + Q F V L + T ++ + LD K+ +
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL----------ALDDKLGRS 122
Query: 1380 GENWSMGQRQLVCLGRVLLK-------RSKILMLDEATASVDTATDNLIQQTLRQ-HFSD 1431
S G+ Q V L V+L+ ++L+LDE S+D A + + + L
Sbjct: 123 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG 182
Query: 1432 CTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470
++ +H + + + LL G + +L
Sbjct: 183 LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 101 bits (254), Expect = 1e-24
Identities = 36/214 (16%), Positives = 84/214 (39%), Gaps = 14/214 (6%)
Query: 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP 690
+ + L ++ +V G + + G G+GKS+LL+ + G G+++ G +
Sbjct: 10 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSAT 68
Query: 691 WIQSGKI----EDNILFGKEMNRERYNAVLDACSLKKDLEIL-SFGDQTVIGERGINLSG 745
+ + + F + D + ++ + +G LSG
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSG 128
Query: 746 GQKQRIQIARALYQ-------DSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYV 798
G+ QR+++A + Q + L D+P +++D S L + + ++
Sbjct: 129 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMS 188
Query: 799 THQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831
+H + A ++K GK+ +G+ +++
Sbjct: 189 SHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 111 bits (278), Expect = 3e-28
Identities = 42/202 (20%), Positives = 92/202 (45%), Gaps = 26/202 (12%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304
K+++ DL V Y VL+ I+ T G G G GK+TL++T+ ++P G+I
Sbjct: 2 KLEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1305 LIDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLDPLEE-----STDEQIWEALDK 1358
+ +G+ I ++ ++ +P++ ++ +V L + +I +AL+
Sbjct: 59 IYNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 1359 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD 1418
++ D +K S G + V L LL ++I +LD+ ++D +
Sbjct: 114 VEVLDLKKK------------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 1419 NLIQQTLRQHFSDCTVLTIAHR 1440
+ + +++ + + ++ I+ R
Sbjct: 162 HKVLKSILEILKEKGIVIISSR 183
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 100 bits (250), Expect = 2e-24
Identities = 43/208 (20%), Positives = 86/208 (41%), Gaps = 26/208 (12%)
Query: 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
L+I D + +D P L+ I + + G V G G GK++LL I + + G +
Sbjct: 3 LEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 678 KLCGTK--------AYVAQSP-WIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEIL 728
G ++ + + +ED + + + ++ + LE +
Sbjct: 59 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK----VNKNEIMDALESV 114
Query: 729 SFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLG 788
D ++ LS G +R+Q+A L +++IY+ DDP A+D + H + +L
Sbjct: 115 EVLDL---KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS-KHKVLKSILE 170
Query: 789 LLSSK--TVIYVTHQVEFLPAADLILVM 814
+L K +I ++ + D+ +
Sbjct: 171 ILKEKGIVIISSREELSY---CDVNENL 195
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 113 bits (283), Expect = 3e-28
Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L +++ V G + G GSGKS+L++ I G + G +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 684 --AYVAQSP-WIQSGKIEDNILFGKEMNRERYNAVL--------DACSLKKDLEILSF-G 731
Q+P ++ + +N+L G+ E L + ++K +IL F
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 732 DQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS 791
+ + LSGGQ + ++I RAL + + + D+P + V +F VL
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 792 SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831
T + + H+++ + D + VM +G+I G+ + I +
Sbjct: 200 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 107 bits (268), Expect = 3e-26
Identities = 54/238 (22%), Positives = 96/238 (40%), Gaps = 15/238 (6%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
+ ++ + L G+S + G+ T I+G GSGKSTLI + ++ G++
Sbjct: 5 LRTENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 1306 IDGIDISLIGLHDL-RSRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGD 1363
+ DI+ +L + Q P + TV NL E E +L +
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 1364 EVRK---------KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
+ + + KL S GQ +LV +GR L+ K++++DE A V
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182
Query: 1415 TATDNLIQQTLRQ-HFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470
+ I + + T L I HR+ V++ D + ++ +G I ++N
Sbjct: 183 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 108 bits (270), Expect = 1e-26
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 16/211 (7%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------KAYVAQ 688
+++++L+V G + + G G GK++ L I G G + + +V
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 689 SPWIQSGKIEDNILFGKEMNRE------RYNAVLDACSLKKDLEILSFGDQTVIGERGIN 742
+ + L+ + + V ++ E+ T + R
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138
Query: 743 -LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-LGLLSSKTVIYVTH 800
LSGGQ+QR+ + RA+ + ++L D+P S +DA + E+ L T IYVTH
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
Query: 801 QVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830
D I VM G + Q G +++ +
Sbjct: 199 DQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 104 bits (260), Expect = 3e-25
Identities = 47/251 (18%), Positives = 106/251 (42%), Gaps = 38/251 (15%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304
+ L+D+ + ++ +S GE ++G +G GK+T ++ + + EP+ GQI
Sbjct: 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1305 LIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTD--------------- 1349
I + D + + P+D + L P D
Sbjct: 61 YIGDKLV-----ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQE 115
Query: 1350 --EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLD 1407
+++ E + L + + +K +L S GQRQ V LGR ++++ ++ ++D
Sbjct: 116 IDQRVREVAELLGLTELLNRKPREL-----------SGGQRQRVALGRAIVRKPQVFLMD 164
Query: 1408 EATASVDTATDNLIQQTLR--QHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNP 1464
E +++D ++ L+ Q T + + H + D + ++N G++++ +P
Sbjct: 165 EPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSP 224
Query: 1465 ANLLENKSSSF 1475
+ + +++F
Sbjct: 225 DEVYDKPANTF 235
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 108 bits (270), Expect = 1e-26
Identities = 48/235 (20%), Positives = 90/235 (38%), Gaps = 23/235 (9%)
Query: 613 SSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK 672
S+ L++ + + +K I+LKV G V + G G+GK++ LS I G V
Sbjct: 2 VSDIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 673 ISGTLKLC---------------GTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLD 717
G + G + +N++ G +++ D
Sbjct: 59 QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD 118
Query: 718 ACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHT 777
+ L + + G LSGG++Q + I RAL + + D+P +
Sbjct: 119 LEWIFSLFPRLK----ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL 174
Query: 778 GSHLFQEVLLGLLSSKTVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDLINS 831
S +F+ + T++ V L A V++ G+I GK ++L+++
Sbjct: 175 VSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 103 bits (259), Expect = 4e-25
Identities = 50/231 (21%), Positives = 101/231 (43%), Gaps = 14/231 (6%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
+++ L V Y ++GI P G+ ++G G+GK+T + + +V G+I+
Sbjct: 7 LEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 1306 IDGIDISLIGLHDLRSR-LSIIPQDPVMFEG-TVRSNL--DPLEESTDEQIWEALDKCQL 1361
+G DI+ H + ++++P+ +F TV NL E I L
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL----- 119
Query: 1362 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD-TATDNL 1420
+ + +L ++ + G S G++Q++ +GR L+ R K+LM+DE + + +
Sbjct: 120 -EWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 1421 IQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470
+ + + T+L + + + +L G I + LL+N
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 106 bits (266), Expect = 3e-26
Identities = 50/242 (20%), Positives = 110/242 (45%), Gaps = 24/242 (9%)
Query: 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ 1303
G + + DL+ R + +L+GIS GE G++G G+GK+T ++ + +++P++G
Sbjct: 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1304 ILIDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLDPL-------EESTDEQIWEA 1355
+ + G ++ H++R +S +P++ + L + +E + A
Sbjct: 59 VTVFGKNVV-EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA 117
Query: 1356 LDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT 1415
+ LG++++ + S G + + + R L+ ++ +LDE T+ +D
Sbjct: 118 TEIAGLGEKIKDRVSTY-----------SKGMVRKLLIARALMVNPRLAILDEPTSGLDV 166
Query: 1416 ATDNLIQQTLRQHFSDC-TVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473
+++ L+Q + T+L +H + V D + L+++G I E L E +
Sbjct: 167 LNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 226
Query: 1474 SF 1475
Sbjct: 227 QN 228
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 99.7 bits (248), Expect = 8e-24
Identities = 40/217 (18%), Positives = 87/217 (40%), Gaps = 19/217 (8%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
LK I+ ++ G + G G+GK++ L I + SG + + G
Sbjct: 18 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77
Query: 684 AYVAQSPWIQSG-KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGIN 742
+Y+ + + + + F + + + +++ EI G++ I +R
Sbjct: 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM--VERATEIAGLGEK--IKDRVST 133
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQV 802
S G +++ IARAL + + + D+P S +D + + + T++ +H +
Sbjct: 134 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 193
Query: 803 EFLPA-ADLILVMKDGKITQAGKYNDLINS-GTDFME 837
+ D I ++ +G I + G +L +E
Sbjct: 194 LEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIE 230
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 105 bits (264), Expect = 5e-26
Identities = 65/216 (30%), Positives = 95/216 (43%), Gaps = 32/216 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-----------A 684
KDINL + G V G G GKS+LL I G SG L + +
Sbjct: 16 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVG 75
Query: 685 YVAQSPWIQSGK-IEDNILFG-------KEMNRERYNAVLDACSLKKDLEILSFGDQTVI 736
V QS + + +N+ FG KE+ +R N V + L L+
Sbjct: 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD---------- 125
Query: 737 GERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-LGLLSSKTV 795
+ LSGGQ+QR+ I R L + ++L D+P S +DA + E+ L +T+
Sbjct: 126 -RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 184
Query: 796 IYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830
IYVTH AD I+V+ G++ Q GK +L +
Sbjct: 185 IYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 104 bits (261), Expect = 1e-25
Identities = 43/243 (17%), Positives = 95/243 (39%), Gaps = 26/243 (10%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
+ L ++ + +V + I+ GE VG +G GKSTL++ + + +G +
Sbjct: 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEGT--------VRSNLDPLEESTDEQIWEALD 1357
I ++ + ++ Q ++ +E ++++ + +
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 116
Query: 1358 KCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT 1417
QL + +K L S GQRQ V +GR L+ + +LDE +++D A
Sbjct: 117 VLQLAHLLDRKPKAL-----------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 165
Query: 1418 DNLIQQTLR--QHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSS 1474
++ + T++ + H + +D +++L+ G + + P L +
Sbjct: 166 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225
Query: 1475 FSQ 1477
F
Sbjct: 226 FVA 228
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 100 bits (251), Expect = 3e-24
Identities = 47/239 (19%), Positives = 102/239 (42%), Gaps = 13/239 (5%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304
+I + ++ + + L ++ GE+ GI+G +G+GK+T ++ + + P+ G++
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1305 LIDGIDISLIGLHDLRSR---LSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQL 1361
D ++ G + + ++ Q ++ NL E + K ++
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP-----NLTAFENIAFPLTNMKMSKEEI 117
Query: 1362 GDEVRK--KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN 1419
V + K + + S Q+Q V L R L+K +L+LDE +++D +
Sbjct: 118 RKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 1420 LIQQTLR--QHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSF 1475
+ ++ Q T+L ++H + +D V +L G + + P +L +N S
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 93.6 bits (232), Expect = 1e-21
Identities = 55/221 (24%), Positives = 88/221 (39%), Gaps = 37/221 (16%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L ++N+ + +G R + G G+GK++ + I G +G L
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 684 ----AYVAQS----PWIQSGKIEDNIL----FGKEMNRERYNAVLDACSLKKDLEILSFG 731
V Q+ P + + + L KE R+R V + L
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH---- 136
Query: 732 DQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-LGLL 790
LSG Q+QR+ +ARAL +D + L D+PFS +DA V +
Sbjct: 137 -------FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189
Query: 791 SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830
T++ V+H + A AD + V+ GK+ Q GK DL +
Sbjct: 190 LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 100 bits (250), Expect = 3e-24
Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 7/205 (3%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 692
N +L +++LKV G + G G+GK+ L I G SG + L G
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKH 72
Query: 693 QSGKI-EDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGE----RGINLSGGQ 747
+ ++ LF ++ + +K +L I + LSGG+
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGE 132
Query: 748 KQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-LGLLSSKTVIYVTHQVEF-L 805
+QR+ +ARAL + I L D+P SA+D T + + + L + TV+++TH
Sbjct: 133 QQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEAR 192
Query: 806 PAADLILVMKDGKITQAGKYNDLIN 830
AD I V+ DGK+ Q GK ++
Sbjct: 193 IMADRIAVVMDGKLIQVGKPEEIFE 217
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 98.2 bits (244), Expect = 2e-23
Identities = 51/245 (20%), Positives = 102/245 (41%), Gaps = 27/245 (11%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305
I++ L ++ L +S GE I+G TG+GK+ ++ + P +G+IL
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEG-----TVRSNLDPLEESTDEQIWEALDKCQ 1360
+DG D++ L + ++ + Q+ +F + + + +++ + +
Sbjct: 59 LDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 1361 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNL 1420
+ + + L S G++Q V L R L+ KIL+LDE +++D T
Sbjct: 117 IEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 1421 IQQTLR--QHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFSQ 1477
++ L + TVL I H T +D + ++ G + + P + E
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR-- 223
Query: 1478 LVAEY 1482
VA +
Sbjct: 224 -VASF 227
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 97.4 bits (242), Expect = 6e-23
Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 10/213 (4%)
Query: 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPV 1331
G + ++G TG+GKS ++ + IV+P G++ ++G DI+ L R + +PQD
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYA 80
Query: 1332 MFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1391
+F + + + E + + E LD K S G+RQ V
Sbjct: 81 LFPHLSVYR-NIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR----LSGGERQRV 135
Query: 1392 CLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR--QHFSDCTVLTIAHRITSVID-SD 1448
L R L+ + ++L+LDE ++VD T ++ + LR Q D +L + H + +D
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195
Query: 1449 LVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481
V ++ +G I E L K+ ++ ++
Sbjct: 196 EVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSA 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 92.0 bits (228), Expect = 4e-21
Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 26/221 (11%)
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-----------AYV 686
+++ ++ + G G+GKS L I G V G ++L G +V
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 687 AQSP-WIQSGKIEDNILFGKEM--NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINL 743
Q + NI +G ER V + G ++ + L
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK--------LGIAHLLDRKPARL 127
Query: 744 SGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-LGLLSSKTVIYVTHQV 802
SGG++QR+ +ARAL + L D+P SAVD T L +E+ + +++VTH +
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187
Query: 803 EFLPA-ADLILVMKDGKITQAGKYNDLINSGTDFM-ELVGA 841
AD + VM +G+I + GK +L ++ + E + A
Sbjct: 188 IEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSA 228
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 79.6 bits (195), Expect = 2e-17
Identities = 17/180 (9%), Positives = 43/180 (23%), Gaps = 16/180 (8%)
Query: 647 MRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKE 706
M++ + G G GK++L+ I+ + K + + D +
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEE---------------VRDPETKKRT 45
Query: 707 MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLF 766
R K + + A + +
Sbjct: 46 GFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIII 105
Query: 767 DDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYN 826
D+ ++ + + + V+ + P I + + + N
Sbjct: 106 DEI-GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPEN 164
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 67.7 bits (164), Expect = 2e-13
Identities = 20/186 (10%), Positives = 43/186 (23%), Gaps = 28/186 (15%)
Query: 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFE 1334
K I G G GK+TL++ + + A + + ++ + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 1335 GTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394
S + Q +E
Sbjct: 62 KFFTSKKLVGSYGVNVQYFE----------------------------ELAIPILERAYR 93
Query: 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLN 1454
R K++++DE + H + V+ + L
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 1455 HGLIEE 1460
++ E
Sbjct: 154 GAVLIE 159
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (139), Expect = 5e-10
Identities = 19/170 (11%), Positives = 45/170 (26%), Gaps = 7/170 (4%)
Query: 1277 GIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGT 1336
+ G G GK+TLI +++ + + + G + + +
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRV 64
Query: 1337 VRSNLDPL------EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1390
+ D +E L L + V + + +
Sbjct: 65 GLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF 124
Query: 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHR 1440
+ R L ++L L+++ + +T +R
Sbjct: 125 IQAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENR 173
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 50.7 bits (119), Expect = 7e-07
Identities = 45/308 (14%), Positives = 94/308 (30%), Gaps = 3/308 (0%)
Query: 914 YWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVA 973
Y I ++ + + +++ A + ++ T D K + I
Sbjct: 12 YKYRIFATIIVGII-KFGIPMLIPLLIKYAID-GVINNHALTTDEKVHHLTIAIGIALFI 69
Query: 974 LAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQS 1033
+ R L K + +++ + F+ G++I+R D
Sbjct: 70 FVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVE 129
Query: 1034 AADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELS 1093
I + + I I+ +++M + ++ + + I + R+L+
Sbjct: 130 QTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLT 189
Query: 1094 RLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGL 1153
R A V E V G + ++SF E K + +
Sbjct: 190 RERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFA 249
Query: 1154 RLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKII 1212
++ ++ I + G I V Y L L L+ L
Sbjct: 250 AINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFA 309
Query: 1213 SVERIFQY 1220
S++R+FQ
Sbjct: 310 SMDRVFQL 317
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 41.1 bits (94), Expect = 7e-04
Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 3/313 (0%)
Query: 915 WKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVAL 974
W I G +V I L L + + +V + L
Sbjct: 8 WPTIAPFKAGLIVAGIALI--LNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGL 65
Query: 975 AVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSA 1034
+ S ++ K + + + P++FFD +G +++R + D
Sbjct: 66 MILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQ 125
Query: 1035 ADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSR 1094
+ I+G +M +WQ+ I+ V + R +S+
Sbjct: 126 VASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISK 185
Query: 1095 LVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLR 1154
+ V + + G + F + R K+ ++ + +A
Sbjct: 186 NMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPI 245
Query: 1155 LDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIIS 1213
+ +++S+ AF L + + + + L L +L + + +
Sbjct: 246 IQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAA 305
Query: 1214 VERIFQYTCIPSE 1226
+ +F E
Sbjct: 306 CQTLFAILDSEQE 318
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.7 bits (91), Expect = 0.003
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKT-VIYVTHQVEFLPAAD 809
+ A YQ S ++ D+ +A+D + + I ++ + +D
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITN-VQRIAAYIRRHRNPDLQFIVISLKNTMFEKSD 403
Query: 810 -LILVMKDGK 818
L+ V + +
Sbjct: 404 ALVGVYRQQQ 413
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1496 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.9 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.9 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.88 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.85 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.71 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.69 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.65 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.5 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.35 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.3 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.07 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.87 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.67 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.55 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.38 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.16 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.43 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.35 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.02 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.87 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.8 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.68 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.4 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.39 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.21 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.14 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.12 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.94 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.92 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.82 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.77 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.77 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.73 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.72 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.72 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.71 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.61 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.61 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.57 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.52 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.45 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.41 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.41 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.22 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.17 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.16 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.14 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.1 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.05 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.97 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.96 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.96 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.94 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.91 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.91 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.89 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.83 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.81 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.81 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.78 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 94.74 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 94.74 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.73 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.73 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.72 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.7 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.65 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.65 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.64 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.61 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.6 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.6 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.52 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.51 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.48 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.44 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.39 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.37 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.35 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.32 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.26 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.25 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.25 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.24 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 94.21 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.2 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.16 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.14 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.13 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.11 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.11 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.1 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.08 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.04 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.97 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.94 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.86 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.84 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.82 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.78 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.72 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.64 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.62 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.62 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.55 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.49 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.48 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.45 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.44 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.38 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.36 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.3 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.29 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.24 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.23 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.21 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.13 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.11 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.1 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.09 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.97 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.97 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 92.96 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.92 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.84 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.83 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 92.82 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.79 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.78 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.72 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 92.71 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 92.67 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.66 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.63 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 92.6 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.56 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.5 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.48 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.48 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.47 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.45 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.43 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.38 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 92.37 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 92.28 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.27 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 92.23 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.1 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.08 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.99 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.88 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 91.83 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.72 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 91.68 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.68 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 91.63 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.62 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.55 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 91.54 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.5 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.43 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.42 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.24 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.23 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.15 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 91.14 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 91.12 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.11 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.06 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.0 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.0 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.97 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 90.94 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.81 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.77 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 90.76 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 90.74 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.71 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.69 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 90.65 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.57 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 90.56 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.56 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 90.55 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.53 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.51 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 90.51 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.48 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 90.47 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 90.44 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.43 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 90.41 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.4 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.37 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.35 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 90.25 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.2 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.18 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 90.11 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.1 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.08 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.06 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.02 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.01 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 89.95 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 89.9 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.86 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 89.77 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 89.75 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 89.74 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 89.69 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 89.68 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.67 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.65 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 89.63 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.57 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.57 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.56 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 89.56 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 89.56 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 89.54 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.54 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.54 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 89.53 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 89.5 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 89.49 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 89.47 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.45 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.34 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 89.29 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 89.27 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 89.21 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 89.2 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.2 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.18 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 89.16 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 89.15 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.14 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 89.05 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 89.04 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 89.0 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 88.98 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.91 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 88.81 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 88.78 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.72 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.7 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.63 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.58 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 88.55 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 88.53 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 88.51 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.46 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 88.42 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 88.36 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 88.33 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 88.28 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 88.28 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 88.27 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.27 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.26 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 88.23 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.19 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 88.18 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 88.15 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.12 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.11 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.1 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 88.1 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.06 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.06 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 88.03 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 88.01 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 87.99 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.94 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 87.86 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 87.85 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 87.83 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 87.79 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 87.72 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 87.71 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 87.66 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 87.66 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 87.64 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 87.6 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 87.59 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 87.58 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 87.56 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 87.52 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 87.5 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.43 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.43 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.4 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 87.32 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 87.23 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 87.21 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 87.21 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 87.1 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 87.08 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 87.0 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 87.0 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 86.99 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 86.95 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 86.89 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 86.82 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 86.72 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 86.69 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 86.68 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 86.66 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.61 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 86.59 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 86.55 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 86.51 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.43 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 86.4 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 86.39 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 86.25 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 86.22 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.2 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 86.17 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 86.17 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 86.08 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 86.07 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 86.05 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 86.05 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 86.04 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 86.03 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 85.95 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 85.95 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 85.91 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 85.9 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 85.89 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 85.89 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 85.85 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 85.83 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 85.8 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 85.66 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 85.61 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 85.6 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 85.58 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 85.58 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 85.57 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.35 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 85.27 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 85.25 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 85.21 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 85.17 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 85.12 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 85.07 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 84.95 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 84.93 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 84.84 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 84.55 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 84.43 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 84.27 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.24 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 84.17 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 84.14 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 84.13 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 84.1 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 84.07 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 83.95 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 83.91 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 83.89 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.87 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 83.72 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 83.44 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 83.26 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 83.18 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 83.11 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 83.02 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 82.33 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 81.92 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 81.89 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 81.82 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 81.56 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 81.56 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 81.33 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 81.32 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 81.11 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 80.98 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 80.98 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 80.77 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 80.45 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 80.42 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.23 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-64 Score=561.10 Aligned_cols=237 Identities=32% Similarity=0.508 Sum_probs=230.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
+|+|+||+|+|+++.++||+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||+||+.++.+++|++|+
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CeEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEE
Confidence 58999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccccccchhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCE
Q 039402 1325 IIPQDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKI 1403 (1496)
Q Consensus 1325 iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~I 1403 (1496)
+|||||.+|++|||+||.... ..++++++++++.+++.+++..+|+|+||.++++|.+||||||||+||||||+++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccch
Confidence 999999999999999998654 5899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHH
Q 039402 1404 LMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481 (1496)
Q Consensus 1404 LiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~ 1481 (1496)
||||||||+||+.|++.|.+.|++..+++|||+||||++++..||||+||++|+|+|+|+|++|++++++.|++|++.
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred hhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999888999999864
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.1e-63 Score=560.37 Aligned_cols=240 Identities=30% Similarity=0.492 Sum_probs=231.0
Q ss_pred CCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHh
Q 039402 1241 PSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1320 (1496)
Q Consensus 1241 p~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR 1320 (1496)
+.+|.|+|+||+|+|+++.++||+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|+++++.+++|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhh
Confidence 45789999999999988878899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEcccccccccchhhccCC-CCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1321 SRLSIIPQDPVMFEGTVRSNLDP-LEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1321 ~~i~iIpQdp~LF~gTIR~NLdp-~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
++|+||||+|.+|+||||+||.. ....+|+++++|++.+++.+++.++|+||||.++++|.+||||||||+||||||++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred heeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 99999999999999999999964 35679999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHH
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLV 1479 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~ 1479 (1496)
+|+|||||||||+||++|++.|.+.|++..+++|||+||||++++..||||+||++|+|+|.|+|+||+++ ++.|++|+
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975 68999997
Q ss_pred HH
Q 039402 1480 AE 1481 (1496)
Q Consensus 1480 ~~ 1481 (1496)
+.
T Consensus 251 ~~ 252 (255)
T d2hyda1 251 SI 252 (255)
T ss_dssp TT
T ss_pred HH
Confidence 54
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.7e-62 Score=550.51 Aligned_cols=239 Identities=33% Similarity=0.509 Sum_probs=230.1
Q ss_pred CcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhc
Q 039402 1242 SHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321 (1496)
Q Consensus 1242 ~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~ 1321 (1496)
..|.|+|+||+|+|+...+++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.|||.|+++++.+++|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CceEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhh
Confidence 35889999999999877778999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEcccccccccchhhccCC--CCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1322 RLSIIPQDPVMFEGTVRSNLDP--LEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~gTIR~NLdp--~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
++++|||||.+|++|+++|+.. ...++++++++|++.+++.+++..+|+||||.++++|.+|||||||||||||||++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred eEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999999754 35789999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHH
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLV 1479 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~ 1479 (1496)
+|+|||||||||+||++|++.|.+.|++..+++|||+||||++++..||||+||++|+|+|+|+|+||+++ ++.|++|+
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHH
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 68999998
Q ss_pred HH
Q 039402 1480 AE 1481 (1496)
Q Consensus 1480 ~~ 1481 (1496)
+.
T Consensus 249 ~~ 250 (253)
T d3b60a1 249 KM 250 (253)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=5.4e-62 Score=544.43 Aligned_cols=234 Identities=32% Similarity=0.533 Sum_probs=225.1
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++||+|+|+++ ++||+||||+|++||++||||+||||||||+++|+|+++|++|+|.|||.|+++++.+++|++|++
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 7999999999754 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccccccccchhhccCCC--CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCE
Q 039402 1326 IPQDPVMFEGTVRSNLDPL--EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKI 1403 (1496)
Q Consensus 1326 IpQdp~LF~gTIR~NLdp~--~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~I 1403 (1496)
|||||.+|++|||+|+... ...++++++++++.+++.+++..+|+++|+.++++|.+||||||||+||||||+++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999753 46789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHH
Q 039402 1404 LMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481 (1496)
Q Consensus 1404 LiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~ 1481 (1496)
||||||||+||+.+++.|++.|++..+++|||+||||++++..||||+||++|+|+|.|+|+||+++ ++.|++|+++
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~ 237 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHC
T ss_pred EEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-ChHHHHHHHH
Confidence 9999999999999999999999999899999999999999999999999999999999999999986 6899999875
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-61 Score=539.29 Aligned_cols=239 Identities=30% Similarity=0.441 Sum_probs=226.2
Q ss_pred CCcceEEEEeEEeEeCCC-CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHH
Q 039402 1241 PSHGKIDLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL 1319 (1496)
Q Consensus 1241 p~~g~I~f~nvs~~Y~~~-~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L 1319 (1496)
+-+|.|+|+||+|+|+.. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|+|||.|+++++.+++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred cccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHH
Confidence 457899999999999753 3469999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccEEEcccccccccchhhccCCC--CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1320 RSRLSIIPQDPVMFEGTVRSNLDPL--EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1320 R~~i~iIpQdp~LF~gTIR~NLdp~--~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
|++|++|||+|.+|++|||+|+... ...++++++++++++++.+++..+|+|+|+.++++|.+||||||||+||||||
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecc
Confidence 9999999999999999999999753 35688999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHH
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSF 1475 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F 1475 (1496)
+++|+|||||||||+||+.|+..|++.|++..+ ++|||+||||++++..||||+||++|+|+|+|+|+||+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHH
Confidence 999999999999999999999999999988654 7899999999999999999999999999999999999986 6899
Q ss_pred HHHHH
Q 039402 1476 SQLVA 1480 (1496)
Q Consensus 1476 ~~l~~ 1480 (1496)
++|++
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 99975
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-53 Score=472.54 Aligned_cols=222 Identities=29% Similarity=0.422 Sum_probs=206.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~ 684 (1496)
|+++|++|+|+. +++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 2 I~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 2 ITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEEEEEeCC-CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEE
Confidence 789999999964 3567999999999999999999999999999999999999999999999984 69
Q ss_pred EEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 039402 685 YVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDI 763 (1496)
Q Consensus 685 yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 763 (1496)
||+|+|++|++||+|||.++.+ .+.+++.++++.|++.++++.+|.|.+|.+|++|.+|||||||||+|||||+++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccch
Confidence 9999999999999999999875 688899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcC-cchHHHHHH
Q 039402 764 YLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSG-TDFMELVGA 841 (1496)
Q Consensus 764 llLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~-~~~~~~~~~ 841 (1496)
+|||||||+||+.+++.+++. +..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++++ ..|.+++..
T Consensus 161 lilDEpts~LD~~~~~~i~~~-l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHH-HHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred hhhhCCccccCHHHHHHHHHH-HHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999764 56667899999999999999999999999999999999999999764 467777653
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.1e-53 Score=476.86 Aligned_cols=224 Identities=31% Similarity=0.466 Sum_probs=209.7
Q ss_pred CccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------
Q 039402 615 ETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1496)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------ 682 (1496)
.+.|+++|++|+|+. +.+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus 14 ~g~I~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 92 (255)
T d2hyda1 14 QGRIDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 92 (255)
T ss_dssp SCCEEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCEEEEEEEEEEeCC-CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhh
Confidence 457999999999974 3568999999999999999999999999999999999999999999999984
Q ss_pred -eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 683 -KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 683 -~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
++||+|+|++|++||+|||.||.+ .++++..++++.+++.++++.+|+|++|.+|++|.+|||||||||+|||||+++
T Consensus 93 ~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~ 172 (255)
T d2hyda1 93 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 172 (255)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred eeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence 699999999999999999999975 578888999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHHHH
Q 039402 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVG 840 (1496)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~ 840 (1496)
|+|+|||||||+||++++..+++ .+..+.+++|+|+|||+++.++.||+|++|++|+|++.|+++|++++++.|.+++.
T Consensus 173 p~ililDEpts~LD~~t~~~i~~-~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~~ 251 (255)
T d2hyda1 173 PPILILDEATSALDLESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYS 251 (255)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHT
T ss_pred CCEEEEeCccccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 99999999999999999988875 45666679999999999999999999999999999999999999999888888764
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2e-52 Score=469.89 Aligned_cols=224 Identities=31% Similarity=0.455 Sum_probs=210.3
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
+.|+++|++|+|+. .+.++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.
T Consensus 12 g~I~~~nvsf~Y~~-~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 90 (253)
T d3b60a1 12 GDLEFRNVTFTYPG-REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 90 (253)
T ss_dssp CCEEEEEEEECSSS-SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred eEEEEEEEEEEeCC-CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhhe
Confidence 46999999999974 3468999999999999999999999999999999999999999999999984
Q ss_pred eEEEccCCccCCCcHHHHhccCC--CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 683 KAYVAQSPWIQSGKIEDNILFGK--EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 683 ~~yv~Q~~~i~~~ti~eNI~~g~--~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
++||+|+|++|++|+++|+.++. ..+++++.++++.+++.++++.+|.|++|.+|++|.+|||||||||+|||||+++
T Consensus 91 i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~ 170 (253)
T d3b60a1 91 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 170 (253)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred EEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence 69999999999999999999986 4688899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHHHH
Q 039402 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVG 840 (1496)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~ 840 (1496)
|+|+|||||||+||+.+++.+++ .+..+.+++|+|+||||++.+..||+|++|++|+|++.|+++|++++++.|.+++.
T Consensus 171 p~ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l~~ 249 (253)
T d3b60a1 171 SPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 249 (253)
T ss_dssp CSEEEEETTTSSCCHHHHHHHHH-HHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHH
T ss_pred CCEEEeccccccCCHHHHHHHHH-HHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 99999999999999999998875 56666789999999999999999999999999999999999999999999998876
Q ss_pred H
Q 039402 841 A 841 (1496)
Q Consensus 841 ~ 841 (1496)
.
T Consensus 250 ~ 250 (253)
T d3b60a1 250 M 250 (253)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6e-52 Score=465.41 Aligned_cols=225 Identities=26% Similarity=0.362 Sum_probs=205.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
+.|+++|++|+|+...+.++|+||||+|++||+++||||||||||||+++|+|+++|++|+|.++|.
T Consensus 10 g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 89 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ 89 (251)
T ss_dssp CCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHH
Confidence 4699999999997655668999999999999999999999999999999999999999999999995
Q ss_pred eEEEccCCccCCCcHHHHhccCCC--CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 683 KAYVAQSPWIQSGKIEDNILFGKE--MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 683 ~~yv~Q~~~i~~~ti~eNI~~g~~--~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
++||+|+|++|++||+|||.+|.. .+.++..+..+.+++.+.++.+|.|.+|.++++|.+|||||||||+|||||+++
T Consensus 90 i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~ 169 (251)
T d1jj7a_ 90 VAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRK 169 (251)
T ss_dssp EEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTC
T ss_pred hhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccC
Confidence 599999999999999999999853 456677777888889999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHHH
Q 039402 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELV 839 (1496)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~ 839 (1496)
|+|+|||||||+||++++..+++.+.+... .++|+|+||||++.+..||+|++|++|+|+++|+++|++++++.|.+++
T Consensus 170 p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~l~ 249 (251)
T d1jj7a_ 170 PCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMV 249 (251)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHh
Confidence 999999999999999999998765433222 3899999999999998999999999999999999999999988888775
Q ss_pred H
Q 039402 840 G 840 (1496)
Q Consensus 840 ~ 840 (1496)
+
T Consensus 250 ~ 250 (251)
T d1jj7a_ 250 Q 250 (251)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.9e-52 Score=464.48 Aligned_cols=220 Identities=28% Similarity=0.472 Sum_probs=204.7
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~ 684 (1496)
++++|++|+|+. ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 789999999963 468999999999999999999999999999999999999999999999984 59
Q ss_pred EEccCCccCCCcHHHHhccCCC--CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 039402 685 YVAQSPWIQSGKIEDNILFGKE--MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762 (1496)
Q Consensus 685 yv~Q~~~i~~~ti~eNI~~g~~--~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1496)
||+|+|++|++||+||+.++.. .+++...++++.+++.+++..+|++.+|.+|++|.+|||||||||+|||||+++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998753 66788888999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHHHH
Q 039402 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVG 840 (1496)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~ 840 (1496)
|+|||||||+||+++++.+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|+++|+++|+++++..|.+++.
T Consensus 160 ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~ 236 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQK-ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHH-HHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHH
T ss_pred EEEecCCccccCHHHHHHHHH-HHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCChHHHHHHH
Confidence 999999999999999988875 45666689999999999999988999999999999999999999998888887765
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.9e-51 Score=463.72 Aligned_cols=218 Identities=22% Similarity=0.334 Sum_probs=198.9
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
+.|+|+|+++.+ .|||+||||+|++||++|||||||||||||+++|+|+++|++|+|.+|| ++
T Consensus 37 ~~i~~~~~~~~g----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i 99 (281)
T d1r0wa_ 37 NNVSFSHLCLVG----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RV 99 (281)
T ss_dssp ---CHHHHHHTT----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CE
T ss_pred CcEEEEEcCCCC----CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EE
Confidence 467777776533 4699999999999999999999999999999999999999999999998 59
Q ss_pred EEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCE
Q 039402 1324 SIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKI 1403 (1496)
Q Consensus 1324 ~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~I 1403 (1496)
+|+||+|.+|++|||+|+.+...+++.+++++++.+++.+.+..+|+++++.++++|.+||||||||+||||||+++|+|
T Consensus 100 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~i 179 (281)
T d1r0wa_ 100 SFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL 179 (281)
T ss_dssp EEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEeccccccCceeeccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHH-HHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHH
Q 039402 1404 LMLDEATASVDTATDNLIQQT-LRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLV 1479 (1496)
Q Consensus 1404 LiLDEaTsslD~~Td~~Iq~~-I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~ 1479 (1496)
||||||||+||+.|++.|.+. ++...+++|+|+||||++.+..||||+||++|+|+++|+|+||++. ++.|++..
T Consensus 180 llLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~~ 255 (281)
T d1r0wa_ 180 YLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSKL 255 (281)
T ss_dssp EEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHHH
T ss_pred hhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhcc-CcHHHHHH
Confidence 999999999999999888765 5555678999999999999999999999999999999999999975 45565544
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-50 Score=461.10 Aligned_cols=207 Identities=41% Similarity=0.717 Sum_probs=197.1
Q ss_pred CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHH
Q 039402 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRER 711 (1496)
Q Consensus 632 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~ 711 (1496)
++|+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++||||+||++++||+|||.||..+++.+
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~ 127 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYR 127 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCceeeccccccccccchH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC
Q 039402 712 YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS 791 (1496)
Q Consensus 712 ~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~ 791 (1496)
++++++.|.+..++..++.+++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.+.+.+++.++....+
T Consensus 128 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~ 207 (281)
T d1r0wa_ 128 YKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 207 (281)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTT
T ss_pred HHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998876666667
Q ss_pred CcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHH
Q 039402 792 SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMEL 838 (1496)
Q Consensus 792 ~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~ 838 (1496)
++|+|+|||+++.+..||+|++|++|+|++.|+++|+++...+|...
T Consensus 208 ~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~ 254 (281)
T d1r0wa_ 208 NKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSK 254 (281)
T ss_dssp TSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHH
T ss_pred CCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhccCcHHHHH
Confidence 99999999999999899999999999999999999998776666543
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.6e-48 Score=423.86 Aligned_cols=214 Identities=23% Similarity=0.384 Sum_probs=193.0
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++||+++|.. .+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|++||.||++++.. |++||+
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEeCC---EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhccee
Confidence 799999999964 389999999999999999999999999999999999999999999999999988765 778999
Q ss_pred Eccccccccc-chhhccCC----CCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccC
Q 039402 1326 IPQDPVMFEG-TVRSNLDP----LEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1400 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp----~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~ 1400 (1496)
|||+|.||.. ||+||+.. .+...++++.++++.+++.++..+.| ..||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTSC
T ss_pred eccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCCh-----------hhCCHHHhcchhhhhhhhcc
Confidence 9999999976 99999952 23345778999999999876544433 46899999999999999999
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCcHH
Q 039402 1401 SKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSF 1475 (1496)
Q Consensus 1401 ~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F 1475 (1496)
|+||+||||||+||+.+.+.|++.|++.. .+.|||+|||+++.+.. ||||+||++|+|++.|+|+++++++...|
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 99999999999999999999999998864 37899999999999987 99999999999999999999999876554
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.3e-47 Score=422.82 Aligned_cols=216 Identities=19% Similarity=0.338 Sum_probs=187.1
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+++|.+ ..||+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+++.+.. |++||
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECC--EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceEE
Confidence 5999999999964 3699999999999999999999999999999999999999999999999999988864 57899
Q ss_pred EEccccccccc-chhhccCCCC---CCcH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPLE---ESTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
+|||+|.||.. ||++|+.... ..+. +.+.++|+.+++.++..+.| ..||||||||++||||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARA 150 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHHH
T ss_pred EEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHhh
Confidence 99999999964 9999997433 3343 44567888888876544433 5689999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCc
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s 1473 (1496)
|+.+|+||+||||||+||+.+...|++.|++.. .++|+|+|||+++.+.. ||||+||++|+|+|.|+|+++++++..
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 230 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 230 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred hccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 999999999999999999999999999999864 38999999999999977 999999999999999999999999877
Q ss_pred HH
Q 039402 1474 SF 1475 (1496)
Q Consensus 1474 ~F 1475 (1496)
.|
T Consensus 231 ~~ 232 (239)
T d1v43a3 231 VF 232 (239)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-47 Score=421.43 Aligned_cols=215 Identities=20% Similarity=0.341 Sum_probs=166.2
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++||+++|.+ ..||+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+++.+.. |++||+
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEEE
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceeee
Confidence 799999999964 3599999999999999999999999999999999999999999999999999987754 678999
Q ss_pred Eccccccccc-chhhccCCCCC---C----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1326 IPQDPVMFEG-TVRSNLDPLEE---S----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp~~~---~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
|||+|.||.. |+++|+..... . .++.+.++|+.+++.+...+.| .+||||||||++|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred eccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999976 99999973321 1 2456889999999987766554 46899999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCcH
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSS 1474 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s~ 1474 (1496)
+.+|+||+|||||++||+.+.+.|++.|++.. .++|||+|||+++.+.. ||||++|++|+|++.|+|+++++++...
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~ 225 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCCH
Confidence 99999999999999999999999999998864 48999999999999988 9999999999999999999999988776
Q ss_pred H
Q 039402 1475 F 1475 (1496)
Q Consensus 1475 F 1475 (1496)
|
T Consensus 226 ~ 226 (232)
T d2awna2 226 F 226 (232)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=5e-48 Score=426.42 Aligned_cols=220 Identities=20% Similarity=0.338 Sum_probs=195.7
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC---hHHHhc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LHDLRS 1321 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~LR~ 1321 (1496)
.|+++||+++|+.+...||+||||+|++||.+||+|+||||||||+++|.|+++|++|+|++||.|++..+ ....|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 58999999999765557999999999999999999999999999999999999999999999999998766 445678
Q ss_pred ccEEEccccccccc-chhhccCC-CC--CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH
Q 039402 1322 RLSIIPQDPVMFEG-TVRSNLDP-LE--EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1393 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~g-TIR~NLdp-~~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~L 1393 (1496)
+||+|||+|.||+. ||+||+.. .. ..+ ++.+.++|+.+++.+.....| .+||||||||++|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQRvai 151 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRVAL 151 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred cceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCCh-----------hhCCHHHHhHHHH
Confidence 89999999999976 99999962 21 233 345888999999977655555 4689999999999
Q ss_pred HHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1394 GRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1394 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
||||..+|+||+||||||+||+.+.+.|++.|++..+ +.|+|+|||+++.+.. ||||++|++|+|+|.|+|++++++
T Consensus 152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999988643 7899999999999876 999999999999999999999998
Q ss_pred CCcHH
Q 039402 1471 KSSSF 1475 (1496)
Q Consensus 1471 ~~s~F 1475 (1496)
+...|
T Consensus 232 P~~~~ 236 (242)
T d1oxxk2 232 PVSIQ 236 (242)
T ss_dssp CSSHH
T ss_pred CCCHH
Confidence 87665
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-47 Score=422.00 Aligned_cols=219 Identities=28% Similarity=0.443 Sum_probs=193.4
Q ss_pred EEEEeEEeEeCCCCC--ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH---Hh
Q 039402 1246 IDLLDLQVRYAPQMP--LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---LR 1320 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~--~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR 1320 (1496)
|+++||+++|..+.. .||+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 789999999976543 4799999999999999999999999999999999999999999999999999988655 56
Q ss_pred cccEEEccccccccc-chhhccCC---CCCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1321 SRLSIIPQDPVMFEG-TVRSNLDP---LEES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1321 ~~i~iIpQdp~LF~g-TIR~NLdp---~~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
++||+|||||.+|.. ||++|+.. .... .++.+.++|++++|.+...+.| ..||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~-----------~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB-----------SCCCHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999976 99999852 1112 2456889999999876543333 468999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
|||||+.+|+||++||||++||+.+...|++.|++..+ +.|||+|||+++.+.. ||||+||++|+|+|.|+|+++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999998643 7899999999999987 99999999999999999999998
Q ss_pred cCCcHH
Q 039402 1470 NKSSSF 1475 (1496)
Q Consensus 1470 ~~~s~F 1475 (1496)
++...|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCChH
Confidence 876543
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.1e-47 Score=422.05 Aligned_cols=218 Identities=20% Similarity=0.366 Sum_probs=193.4
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH----Hh
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD----LR 1320 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~----LR 1320 (1496)
.|+++||+++|.+ ..||+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+... .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred cEEEEeEEEEECC--EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccc
Confidence 5899999999964 35999999999999999999999999999999999999999999999999998776544 36
Q ss_pred cccEEEccccccccc-chhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1321 SRLSIIPQDPVMFEG-TVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1321 ~~i~iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
++||+|||+|.||+. ||++|+... ...+ ++.+.++++.+++.+...+.| ..||||||||++
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----------~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHHHH
T ss_pred ccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHH
Confidence 789999999999976 999999621 1233 345788999999876554444 468999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
|||||+.+|+||+|||||++||+.+...|++.|++..+ +.|||+|||+++.+.. ||||+||++|+|+|.|+|+|+++
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988643 8999999999999987 99999999999999999999999
Q ss_pred cCCcHH
Q 039402 1470 NKSSSF 1475 (1496)
Q Consensus 1470 ~~~s~F 1475 (1496)
++...|
T Consensus 230 ~P~~~~ 235 (240)
T d1g2912 230 KPANTF 235 (240)
T ss_dssp SCSBHH
T ss_pred CCCCHH
Confidence 887665
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.3e-46 Score=413.59 Aligned_cols=208 Identities=24% Similarity=0.371 Sum_probs=181.5
Q ss_pred EEEEeEEeEeCCCCC--ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHH----
Q 039402 1246 IDLLDLQVRYAPQMP--LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL---- 1319 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~--~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L---- 1319 (1496)
|+++||+++|+.+.. .||+||||+|++||.+||+|+||||||||+++|.|+++|++|+|++||.|+..++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 799999999975443 37999999999999999999999999999999999999999999999999999997775
Q ss_pred hcccEEEccccccccc-chhhccCC---C---CCCcH----HHHHHHHHHcCCcHHH-HhccCCcccccccCCCCCCchH
Q 039402 1320 RSRLSIIPQDPVMFEG-TVRSNLDP---L---EESTD----EQIWEALDKCQLGDEV-RKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1320 R~~i~iIpQdp~LF~g-TIR~NLdp---~---~~~sd----~eI~~aL~~~~L~~~i-~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
|++||+|||+|.||+. ||++|+.. + ...+. +++.+.|+.++|.+.. ...| .+|||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----------~~LSGGq 150 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----------NQLSGGQ 150 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----------GGSCHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCCh-----------hhCCHHH
Confidence 4579999999999866 99999752 1 22333 3466778888876532 2233 4689999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcccCEEEEEeCCeEeEecCh
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNP 1464 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p 1464 (1496)
|||++|||||+++|+||+||||||+||+.+.+.|++.|++.. .++|||+|||+++.+..||||++|++|+|+|.|++
T Consensus 151 kQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 151 QQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999999999999999999864 37899999999998888999999999999999976
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-45 Score=415.27 Aligned_cols=219 Identities=27% Similarity=0.422 Sum_probs=193.1
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCCh--------
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL-------- 1316 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-------- 1316 (1496)
.|+++||+++|.. ..||+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+.
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEEEEEEEECC--EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccc
Confidence 4899999999964 359999999999999999999999999999999999999999999999999976543
Q ss_pred -----HHHhcccEEEccccccccc-chhhccCC----CCCCc----HHHHHHHHHHcCCcHHHHh-ccCCcccccccCCC
Q 039402 1317 -----HDLRSRLSIIPQDPVMFEG-TVRSNLDP----LEEST----DEQIWEALDKCQLGDEVRK-KEGKLDSKVTENGE 1381 (1496)
Q Consensus 1317 -----~~LR~~i~iIpQdp~LF~g-TIR~NLdp----~~~~s----d~eI~~aL~~~~L~~~i~~-lp~gLdt~v~e~G~ 1381 (1496)
...|++||+|||+|.+|.. ||++|+.. ....+ ++.+.++++++++.+.... .| .
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-----------~ 148 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-----------V 148 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------G
T ss_pred cHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCc-----------c
Confidence 3578899999999999976 99999852 12233 3457889999999876543 23 3
Q ss_pred CCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEe
Q 039402 1382 NWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIE 1459 (1496)
Q Consensus 1382 nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~Iv 1459 (1496)
+||||||||+||||||..+|+||||||||++||+.+...|.+.|++.. +++|||+|||+++.+.. ||||+||++|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 689999999999999999999999999999999999999999998764 47899999999999987 9999999999999
Q ss_pred EecChhhHhhcCCcHHH
Q 039402 1460 EFDNPANLLENKSSSFS 1476 (1496)
Q Consensus 1460 E~g~p~~Ll~~~~s~F~ 1476 (1496)
|.|+|+++++++...|-
T Consensus 229 ~~g~~~ev~~~P~~~~~ 245 (258)
T d1b0ua_ 229 EEGDPEQVFGNPQSPRL 245 (258)
T ss_dssp EEECHHHHHHSCCSHHH
T ss_pred EEcCHHHHHhCCCCHHH
Confidence 99999999998876554
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2e-44 Score=400.45 Aligned_cols=215 Identities=23% Similarity=0.400 Sum_probs=187.8
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
|.|+++|++++|.. ..||+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+ ..+++|+++
T Consensus 1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CCEEEEeEEEEECC--EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhhE
Confidence 67999999999965 359999999999999999999999999999999999999999999999999987 457889999
Q ss_pred EEEccccccccc-chhhccCCC---CCCcHHH----HHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPL---EESTDEQ----IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~---~~~sd~e----I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
+++||++.+|.. |+++|+..+ ...++++ +.++++.+++.+...+ ...+||||||||++|||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-----------RVSTYSKGMVRKLLIAR 146 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS-----------BGGGCCHHHHHHHHHHH
T ss_pred eEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhh-----------hhhhCCHHHHHHHHHHH
Confidence 999999999877 999998532 1234444 4555666666544332 33568999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCC
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKS 1472 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~ 1472 (1496)
||+.+|+||+|||||++||+.+...|++.|++.. ++.|||+++|+++.+.. ||||+||++|+|++.|+|++|.++..
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhccC
Confidence 9999999999999999999999999999998864 57999999999999987 99999999999999999999987543
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.8e-44 Score=401.71 Aligned_cols=219 Identities=23% Similarity=0.395 Sum_probs=182.3
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhc-cc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS-RL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~-~i 1323 (1496)
-|+++||+++|.. ..||+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+...+.+..++ .+
T Consensus 6 ~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi 83 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred EEEEeeEEEEECC--EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcc
Confidence 5899999999964 35999999999999999999999999999999999999999999999999999998877644 59
Q ss_pred EEEccccccccc-chhhccCCC--CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccC
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPL--EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1400 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~--~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~ 1400 (1496)
+++||++.+|+. |+++|+... .....+++.+.+++.- +....+.+..| ....+||||||||++|||||+.+
T Consensus 84 ~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~----~~~~~LSGG~~Qrv~iAraL~~~ 157 (240)
T d1ji0a_ 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF--SLFPRLKERLK----QLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHH--HHCHHHHTTTT----SBSSSSCHHHHHHHHHHHHHTTC
T ss_pred cccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHH--HHhhChHHHHh----CchhhCCHHHHHHHHHHHHHHhC
Confidence 999999999986 999998532 1222222322222210 00011122233 33467999999999999999999
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcC
Q 039402 1401 SKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471 (1496)
Q Consensus 1401 ~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~ 1471 (1496)
|+||+|||||++||+.+...|.+.|++.. +++|||+|+|+++.+.. ||||+||++|+|++.|+|+++++++
T Consensus 158 P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred CCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcCH
Confidence 99999999999999999999999999864 57999999999999877 9999999999999999999999753
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.4e-44 Score=402.73 Aligned_cols=213 Identities=25% Similarity=0.326 Sum_probs=183.9
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhc-cc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS-RL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~-~i 1323 (1496)
-++++||+++|.. ..||+||||+|++||.+||+|+||||||||+++|+|+++|++|+|++||.|++..+.++.++ .|
T Consensus 4 iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred eEEEEEEEEEECC--eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence 4899999999964 35999999999999999999999999999999999999999999999999999999988755 49
Q ss_pred EEEccccccccc-chhhccCCCC----------------CCcH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCC
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPLE----------------ESTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGEN 1382 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~~----------------~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1382 (1496)
+++||+|.+|.. ||++|+.... ...+ ++..++++..++.+.. | ....+
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~ 150 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-------D----RKAGE 150 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-------T----SBGGG
T ss_pred CccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhc-------c----Cchhh
Confidence 999999998866 9999984210 0111 3355566666654332 2 22456
Q ss_pred CCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeE
Q 039402 1383 WSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEE 1460 (1496)
Q Consensus 1383 LS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE 1460 (1496)
||||||||++|||||+.+|++|||||||++||+.+.+.|.+.|++.. +++|||+|+|+++.+.. ||||+||++|+|++
T Consensus 151 LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~ 230 (254)
T d1g6ha_ 151 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 230 (254)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999998763 57999999999999976 99999999999999
Q ss_pred ecChhhHhhc
Q 039402 1461 FDNPANLLEN 1470 (1496)
Q Consensus 1461 ~g~p~~Ll~~ 1470 (1496)
.|+|+|+.++
T Consensus 231 ~g~~~e~~~~ 240 (254)
T d1g6ha_ 231 EGRGEEEIKN 240 (254)
T ss_dssp EEESHHHHHH
T ss_pred EecHHHHhhc
Confidence 9999998753
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.8e-44 Score=394.34 Aligned_cols=202 Identities=24% Similarity=0.330 Sum_probs=169.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEE
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~y 685 (1496)
.|+++|++++|+ +..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+ +||
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~ 82 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 82 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred eEEEEEEEEEEC---CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEE
Confidence 489999999995 468999999999999999999999999999999999999999999999995 699
Q ss_pred EccCCccCC-CcHHHHhccCCC---CCHHHH----HHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 686 VAQSPWIQS-GKIEDNILFGKE---MNRERY----NAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 686 v~Q~~~i~~-~ti~eNI~~g~~---~~~~~~----~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
|||+|.++. .||+||+.|+.. .+++.. .++++.++++ ...++...+|||||||||+|||||
T Consensus 83 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGq~QRvaiAraL 151 (239)
T d1v43a3 83 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-----------ELLNRYPAQLSGGQRQRVAVARAI 151 (239)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-----------GGTTSCTTTCCSSCHHHHHHHHHH
T ss_pred EeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHHHHHhhh
Confidence 999999985 699999999753 344333 3344444443 234577889999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
..+|+|+|||||||||||.+...+.+.+.+...+ |+|+|+|||+++++.. ||||++|++|+|+++|+++|+.++.
T Consensus 152 ~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 152 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred ccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999987654443333 9999999999999865 9999999999999999999998664
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-44 Score=395.63 Aligned_cols=201 Identities=31% Similarity=0.442 Sum_probs=145.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~yv 686 (1496)
|+++|++++|+ +..+|+||||+|++||+++|+||||||||||+++|.|+++|++|+|.++|+ +|||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 77 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 77 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEE
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeee
Confidence 68999999995 468999999999999999999999999999999999999999999999983 6999
Q ss_pred ccCCccCC-CcHHHHhccCCCCC-------HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 039402 687 AQSPWIQS-GKIEDNILFGKEMN-------RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 758 (1496)
Q Consensus 687 ~Q~~~i~~-~ti~eNI~~g~~~~-------~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 758 (1496)
||+|.++. .|++|||.|+.... +++..++++..++.+ .......+|||||||||+|||||+
T Consensus 78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-----------~~~~~~~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-----------LLDRKPKALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp CSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChh-----------hhhCChhhCCHHHHHHHHHHHHHh
Confidence 99998875 59999999985422 233444555554432 234567899999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 039402 759 QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 759 ~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
.+|+++||||||++||+.+...+++.+.+.. ..|+|+|+|||+++++.. ||||++|++|+|++.|+++|++++.
T Consensus 147 ~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 222 (232)
T d2awna2 147 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 222 (232)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 9999999999999999999999976554433 359999999999998876 9999999999999999999998653
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5.5e-44 Score=392.95 Aligned_cols=215 Identities=25% Similarity=0.422 Sum_probs=185.5
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
+++ ++..+|.+- .+ ||||+++ ||.+||+||||||||||+++|.|+++|++|+|.+||.|+++++.. |++||+
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCcee
Confidence 455 567777542 23 8999995 699999999999999999999999999999999999999988764 789999
Q ss_pred Eccccccccc-chhhccCC-CCCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1326 IPQDPVMFEG-TVRSNLDP-LEEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp-~~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
|||+|.||+. ||+||+.. ....+ ++.+.++++++++.++....| ..||||||||++|||||++
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----------~~LSGG~kQRvaiAral~~ 143 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----------ARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG-----------GGSCHHHHHHHHHHHHHTT
T ss_pred eccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCCh-----------hhCCHHHHHHHHHHHHHhc
Confidence 9999999976 99999863 33333 345778888888876655554 4689999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCcHHH
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFS 1476 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~ 1476 (1496)
+|+||+||||||+||+.+...|++.|++..+ ++|||+|||+++.+.. ||||+||++|+|+++|+|+++++.++..-+
T Consensus 144 ~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~ 223 (240)
T d2onka1 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHH
T ss_pred cCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCCHHHH
Confidence 9999999999999999999999999988643 7899999999999987 999999999999999999999988776554
Q ss_pred HHH
Q 039402 1477 QLV 1479 (1496)
Q Consensus 1477 ~l~ 1479 (1496)
+++
T Consensus 224 ~fl 226 (240)
T d2onka1 224 EFL 226 (240)
T ss_dssp HHG
T ss_pred HHh
Confidence 544
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=7.6e-44 Score=390.26 Aligned_cols=200 Identities=29% Similarity=0.417 Sum_probs=173.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~yv 686 (1496)
++++|++++|+ ..+|+||||+|++||+++|+||||||||||+++|+|.++|++|+|.++|. +|||
T Consensus 2 i~v~nlsk~y~----~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v 77 (229)
T d3d31a2 2 IEIESLSRKWK----NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (229)
T ss_dssp EEEEEEEEECS----SCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEeC----CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceee
Confidence 78999999995 25899999999999999999999999999999999999999999999984 5999
Q ss_pred ccCCccCC-CcHHHHhccCCC----CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 039402 687 AQSPWIQS-GKIEDNILFGKE----MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761 (1496)
Q Consensus 687 ~Q~~~i~~-~ti~eNI~~g~~----~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 761 (1496)
+|++.++. .||+||+.|+.. .++++..++++..++.+ ...+.+.+|||||||||+|||||+++|
T Consensus 78 ~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGG~~QRvaiAraL~~~P 146 (229)
T d3d31a2 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH-----------LLDRNPLTLSGGEQQRVALARALVTNP 146 (229)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTT-----------TTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred ccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchh-----------hHhCChhhCCHHHhcchhhhhhhhccC
Confidence 99999985 599999998642 34566666666665533 234677899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 039402 762 DIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 762 ~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
+++|||||||+|||.+...+.+.+.+... .|.|+|+|||+++.+.. ||||++|++|+|++.|+++|++++.
T Consensus 147 ~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P 219 (229)
T d3d31a2 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (229)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999998765444333 48999999999998776 9999999999999999999998653
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=6e-44 Score=393.68 Aligned_cols=204 Identities=26% Similarity=0.339 Sum_probs=174.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.|+++|++++|+. ++..+|+||||+|++||+++|+||||||||||+++|.|.++|++|+|.++|+
T Consensus 3 ~i~v~nlsk~y~~-g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECC-CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 4899999999963 2457899999999999999999999999999999999999999999999883
Q ss_pred --eEEEccCCccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 683 --KAYVAQSPWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 683 --~~yv~Q~~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
+|||+|+|.++. .||+|||.|+.. .++ ++.+++++.+++.+ ....++.+|||||||||+
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~~~p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-----------VLNHFPRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHHH
T ss_pred ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHh-----------hhhCChhhCCHHHHhHHH
Confidence 699999999885 599999998753 333 34455566665533 235667899999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
|||||..+|+++||||||++||+.+...+.+.+.+... .|.|+|+|||+++++.. ||+|++|++|+|++.|+++|+.+
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999765444323 38999999999998755 99999999999999999999986
Q ss_pred cC
Q 039402 831 SG 832 (1496)
Q Consensus 831 ~~ 832 (1496)
+.
T Consensus 231 ~P 232 (242)
T d1oxxk2 231 NP 232 (242)
T ss_dssp SC
T ss_pred CC
Confidence 54
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1e-43 Score=392.53 Aligned_cols=202 Identities=27% Similarity=0.385 Sum_probs=173.6
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.|+++|++++|+ +.++|+||||+|++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 589999999995 467999999999999999999999999999999999999999999999882
Q ss_pred ---eEEEccCCccCCC-cHHHHhccCC---CCCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 683 ---KAYVAQSPWIQSG-KIEDNILFGK---EMNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 683 ---~~yv~Q~~~i~~~-ti~eNI~~g~---~~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
+|||+|+|.++.. ||+||+.|+. ..+. ++..++++.+++.+ ...+++.+|||||||||
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~-----------~~~~~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-----------LLNRKPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-----------GTTCCGGGSCHHHHHHH
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHH
Confidence 6999999998864 9999999873 2333 23445555555532 22467789999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHH
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLI 829 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~ 829 (1496)
+|||||..+|+++||||||++||+.+...+.+.+.+...+ |.|+|+|||+++++.. ||+|++|++|+|++.|+++|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999987654433334 9999999999999866 9999999999999999999998
Q ss_pred hcC
Q 039402 830 NSG 832 (1496)
Q Consensus 830 ~~~ 832 (1496)
++.
T Consensus 229 ~~P 231 (240)
T d1g2912 229 DKP 231 (240)
T ss_dssp HSC
T ss_pred hCC
Confidence 654
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3e-43 Score=386.75 Aligned_cols=201 Identities=27% Similarity=0.379 Sum_probs=163.9
Q ss_pred EEEEeeEEEecCCCC-CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 618 LDIVDGNFSWDISSH-NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
|+++|++++|..... ..+|+||||+|++||+++|+||||||||||+++|.|..+|++|+|.++|.
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 789999999974322 24799999999999999999999999999999999999999999999983
Q ss_pred ---eEEEccCCccCC-CcHHHHhccCC------CCCH-HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 683 ---KAYVAQSPWIQS-GKIEDNILFGK------EMNR-ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 683 ---~~yv~Q~~~i~~-~ti~eNI~~g~------~~~~-~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
+|||+|+|.++. .||+||+.++. ..+. ++.+++.+. ++.+...+ ......+.+|||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~L~~-~~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC------LKMAELEE-RFANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHH------HHHTTCCG-GGTTCCGGGSCHHHHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHH------HHhhchhh-hhhcCChhhCCHHHHHHH
Confidence 699999998874 59999999753 2232 222333332 22221111 123456789999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCccccCCEEEEEeCCeEEEecCh
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKY 825 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~ 825 (1496)
+|||||..+|+++|||||||+||+.++..+++.+.+... .|+|+|+||||++.+..||||++|++|+|+++|+.
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999999999865444334 38999999999998877999999999999999864
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-43 Score=390.43 Aligned_cols=203 Identities=23% Similarity=0.335 Sum_probs=173.4
Q ss_pred EEEEeeEEEecCCCC-CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 618 LDIVDGNFSWDISSH-NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
++++|++++|..+.. ..+|+||||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|+
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 789999999975432 25799999999999999999999999999999999999999999999984
Q ss_pred --eEEEccCCccCC-CcHHHHhccCC-----CCC--HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 683 --KAYVAQSPWIQS-GKIEDNILFGK-----EMN--RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 683 --~~yv~Q~~~i~~-~ti~eNI~~g~-----~~~--~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
+|||+|+|.+++ .||+|||.++. +.. +++..++++.++|.+ .....+.+|||||||||+
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~-----------~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-----------KHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTT-----------TTSSCBSCCCHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHHHH
Confidence 699999998875 49999998752 222 244556666666642 235667899999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
|||||..+|+++||||||++||+.++..+++.+.+...+ |.|+|+||||++++.. ||||++|++|+|++.|+++|+++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999998655443344 8999999999999875 99999999999999999999875
Q ss_pred c
Q 039402 831 S 831 (1496)
Q Consensus 831 ~ 831 (1496)
+
T Consensus 231 ~ 231 (240)
T d3dhwc1 231 H 231 (240)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.8e-42 Score=387.26 Aligned_cols=203 Identities=27% Similarity=0.419 Sum_probs=173.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++++|+ +.++|+||||+|++||+++|+||||||||||+++|+|.++|++|+|.++|+
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 489999999995 467999999999999999999999999999999999999999999999883
Q ss_pred ------------eEEEccCCccCC-CcHHHHhccCC----CCCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCC
Q 039402 683 ------------KAYVAQSPWIQS-GKIEDNILFGK----EMNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGI 741 (1496)
Q Consensus 683 ------------~~yv~Q~~~i~~-~ti~eNI~~g~----~~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~ 741 (1496)
+|||+|+|.++. .||.|||.++. ..++ ++..++++.+++.+... .+.+.
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ----------GKYPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHH----------TSCGG
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhh----------ccCcc
Confidence 589999999875 59999998762 2332 33445555566544332 23467
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEE
Q 039402 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKIT 820 (1496)
Q Consensus 742 ~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 820 (1496)
+|||||||||+|||||..+|+++||||||++||+.+...+++.+.+...+|+|+|+||||++++.. ||||++|++|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999986544444568999999999999876 9999999999999
Q ss_pred EecChHHHHhcC
Q 039402 821 QAGKYNDLINSG 832 (1496)
Q Consensus 821 ~~G~~~~l~~~~ 832 (1496)
+.|+++|++++.
T Consensus 229 ~~g~~~ev~~~P 240 (258)
T d1b0ua_ 229 EEGDPEQVFGNP 240 (258)
T ss_dssp EEECHHHHHHSC
T ss_pred EEcCHHHHHhCC
Confidence 999999998764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.9e-41 Score=375.80 Aligned_cols=207 Identities=25% Similarity=0.352 Sum_probs=170.9
Q ss_pred CccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------
Q 039402 615 ETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1496)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------ 682 (1496)
+..++++|++++|. +..+|+||||+|++||+++|+||||||||||+++|+|.++|++|+|.++|+
T Consensus 4 d~~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r 80 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp SEEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred ceEEEEeeEEEEEC---CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHH
Confidence 45789999999995 467999999999999999999999999999999999999999999999994
Q ss_pred --eEEEccCCccCC-CcHHHHhccCCC--CCHHHHHHHHH-HhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH
Q 039402 683 --KAYVAQSPWIQS-GKIEDNILFGKE--MNRERYNAVLD-ACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 756 (1496)
Q Consensus 683 --~~yv~Q~~~i~~-~ti~eNI~~g~~--~~~~~~~~v~~-~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 756 (1496)
++|+||++.+|. .|++||+.++.. .+.+..++.++ ...+...++ ....+.+.+|||||||||+||||
T Consensus 81 ~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~LSGG~~Qrv~iAra 153 (240)
T d1ji0a_ 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-------ERLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-------TTTTSBSSSSCHHHHHHHHHHHH
T ss_pred hcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChH-------HHHhCchhhCCHHHHHHHHHHHH
Confidence 589999998886 499999987642 12222222221 111111111 12346678999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 757 LYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
|.++|+++||||||++|||.+..++++.+.+...+|+|+|++||+++++.. ||||++|++|+|++.|+++|+.++
T Consensus 154 L~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999986544434568999999999998765 999999999999999999999764
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7.8e-41 Score=376.17 Aligned_cols=203 Identities=23% Similarity=0.336 Sum_probs=168.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++++|+ +.++|+||||++++||+++|+||||||||||+++|+|.++|++|+|.++|+
T Consensus 4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred eEEEEEEEEEEC---CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence 589999999995 467999999999999999999999999999999999999999999999995
Q ss_pred eEEEccCCccC-CCcHHHHhccCCCC-----------------CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCC
Q 039402 683 KAYVAQSPWIQ-SGKIEDNILFGKEM-----------------NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLS 744 (1496)
Q Consensus 683 ~~yv~Q~~~i~-~~ti~eNI~~g~~~-----------------~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LS 744 (1496)
++|+||+|.++ +.||+||+.++... .++..+++.+. ++.+ +......+...+||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~--~l~~~~~~~~~~LS 152 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKI------LEFL--KLSHLYDRKAGELS 152 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHH------HHHT--TCGGGTTSBGGGSC
T ss_pred CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHH------HHhc--CcchhccCchhhCC
Confidence 59999999876 56999999886321 11211222111 1111 12223356678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEec
Q 039402 745 GGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823 (1496)
Q Consensus 745 GGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 823 (1496)
|||||||+|||||.++|+++||||||+|||+.+...+++.+.+...+|+|||+|||+++++.. ||||++|++|+|+++|
T Consensus 153 gG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g 232 (254)
T d1g6ha_ 153 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 232 (254)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred cHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEe
Confidence 999999999999999999999999999999999999987655444579999999999999765 9999999999999999
Q ss_pred ChHHHHh
Q 039402 824 KYNDLIN 830 (1496)
Q Consensus 824 ~~~~l~~ 830 (1496)
+++|+.+
T Consensus 233 ~~~e~~~ 239 (254)
T d1g6ha_ 233 RGEEEIK 239 (254)
T ss_dssp ESHHHHH
T ss_pred cHHHHhh
Confidence 9988754
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9.8e-41 Score=370.70 Aligned_cols=201 Identities=19% Similarity=0.266 Sum_probs=170.1
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------eE
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------KA 684 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------~~ 684 (1496)
+|+++|++++|. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 2 aI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~ 78 (238)
T d1vpla_ 2 AVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 78 (238)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CEEEEeEEEEEC---CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEe
Confidence 689999999995 578999999999999999999999999999999999999999999999985 59
Q ss_pred EEccCCccCC-CcHHHHhccCC---CCCHHHHH----HHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH
Q 039402 685 YVAQSPWIQS-GKIEDNILFGK---EMNRERYN----AVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 756 (1496)
Q Consensus 685 yv~Q~~~i~~-~ti~eNI~~g~---~~~~~~~~----~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 756 (1496)
||||++.++. .|++||+.|.. ..+.++.+ ++++.+++. ....++..+||||||||++||||
T Consensus 79 ~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~lSgG~~qrv~iA~a 147 (238)
T d1vpla_ 79 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-----------EKIKDRVSTYSKGMVRKLLIARA 147 (238)
T ss_dssp EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-----------GGGGSBGGGCCHHHHHHHHHHHH
T ss_pred EeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-----------HHHhhhhhhCCHHHHHHHHHHHH
Confidence 9999998764 59999997643 23333333 333333332 23456778999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 757 LYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
|+++|+|+||||||++||+.+.+.+++-+.+...+|+|||++||+++++.. ||||++|++|+|++.|+++|+.+.
T Consensus 148 l~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 148 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999999999999999888865433334568999999999999875 999999999999999999999653
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.4e-40 Score=363.88 Aligned_cols=198 Identities=27% Similarity=0.415 Sum_probs=161.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~yv 686 (1496)
+++ +....+. ...+ ||||+++ ||+++|+||||||||||+++|+|+++|++|+|.++|. +|||
T Consensus 3 l~v-~~~k~~g----~~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v 75 (240)
T d2onka1 3 LKV-RAEKRLG----NFRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp EEE-EEEEEET----TEEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEE-EEEEEEC----CEEE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceee
Confidence 344 3455553 1234 8999995 6899999999999999999999999999999999984 6999
Q ss_pred ccCCccCC-CcHHHHhccCCC-CCHHH----HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 687 AQSPWIQS-GKIEDNILFGKE-MNRER----YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 687 ~Q~~~i~~-~ti~eNI~~g~~-~~~~~----~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
||++.++. .||+|||.|+.. .+++. ..++++.+++ ....+..+.+|||||||||+|||||+++
T Consensus 76 ~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl-----------~~~~~~~~~~LSGG~kQRvaiAral~~~ 144 (240)
T d2onka1 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI-----------AHLLDRKPARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTC-----------TTTTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred ccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCc-----------HhhhhCChhhCCHHHHHHHHHHHHHhcc
Confidence 99999985 599999999853 33332 2333333333 2234677899999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcCc
Q 039402 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSGT 833 (1496)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~~ 833 (1496)
|+++|||||||+||+.+...+.+.+.+...+ |.|+|+|||+++.+.. ||+|++|++|+|++.|+++|++++..
T Consensus 145 P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~ 219 (240)
T d2onka1 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKN 219 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCC
T ss_pred CCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCC
Confidence 9999999999999999999987654443333 8999999999998766 99999999999999999999986543
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-39 Score=362.15 Aligned_cols=209 Identities=22% Similarity=0.299 Sum_probs=182.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
-++++||+.+| +|+||||+|++||.+||+|+||||||||+++|.|+. |++|+|.++|.|+...+.+.++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECcccCc------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 47899998655 699999999999999999999999999999999976 68999999999999999999999999
Q ss_pred EEccccc-ccccchhhccCCC--CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc--
Q 039402 1325 IIPQDPV-MFEGTVRSNLDPL--EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK-- 1399 (1496)
Q Consensus 1325 iIpQdp~-LF~gTIR~NLdp~--~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr-- 1399 (1496)
+++|+.. .|..|+.+|+... .....+.+.++++.+++.+.+. ....+||||||||++|||||++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTT-----------SBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred eeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhC-----------cChhhcCHHHHHHHHHHHHHHhhC
Confidence 9999986 4677899888532 2334566778888887765432 3345799999999999999997
Q ss_pred -----CCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcC
Q 039402 1400 -----RSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471 (1496)
Q Consensus 1400 -----~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~ 1471 (1496)
+|+||+|||||++||+.+.+.|.+.|++.. +++|||+|+|+++.+.+ ||||+||++|+|++.|+|++++.++
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCCh
Confidence 679999999999999999999999999853 68999999999998876 9999999999999999999999653
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=5.9e-38 Score=340.65 Aligned_cols=190 Identities=24% Similarity=0.435 Sum_probs=162.3
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+++|. .+||+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++. .+|.+++
T Consensus 2 ~lev~~ls~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred eEEEEEEEEEeC---CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehh-----HhcCcEE
Confidence 589999999994 25999999999999999999999999999999999999999999999999985 4688999
Q ss_pred EEccccccccc-chhhccCC----C-CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc
Q 039402 1325 IIPQDPVMFEG-TVRSNLDP----L-EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL 1398 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp----~-~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL 1398 (1496)
++||++.++.. |+++|+.. + ...+++++.++++..++.+ ++..+ .+||||||||++|||||+
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~----~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKL----GELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBG----GGSCHHHHHHHHHHHHTT
T ss_pred EEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc--------ccccc----CcCCCcHHHHHHHHHHHh
Confidence 99999998866 99999852 2 3567889999999887654 22222 369999999999999999
Q ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeC
Q 039402 1399 KRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNH 1455 (1496)
Q Consensus 1399 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~ 1455 (1496)
++|+|+||||||++||+++.+.+.+.|++..+++++++|+|+ +.+..||++.+|++
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~-~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred cCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEe-chhhhcchhhheee
Confidence 999999999999999999999999999987765544455554 23457999999864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.5e-37 Score=339.07 Aligned_cols=195 Identities=23% Similarity=0.374 Sum_probs=162.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~ 683 (1496)
.++++|++. ...|+||||+|++||+++|+||||||||||+++|.|.. |++|+|.++|+ .
T Consensus 3 il~~~dv~~-------~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAE-------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECC-------TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECccc-------CceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhc
Confidence 467788743 24799999999999999999999999999999999975 68999999985 3
Q ss_pred EEEccCCcc-CCCcHHHHhccCCC--CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHcc-
Q 039402 684 AYVAQSPWI-QSGKIEDNILFGKE--MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQ- 759 (1496)
Q Consensus 684 ~yv~Q~~~i-~~~ti~eNI~~g~~--~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~- 759 (1496)
+|++|+... +..++.+++.++.. ...++.+++++.+++.+ .++++..+|||||||||+||||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTT-----------TTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred eeeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHh-----------HhCcChhhcCHHHHHHHHHHHHHHhh
Confidence 899998764 56789999987653 33555666666655532 3467778999999999999999997
Q ss_pred ------CCCEEEEecCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHhc
Q 039402 760 ------DSDIYLFDDPFSAVDAHTGSHLFQEVLLG-LLSSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 760 ------~~~illLDep~saLD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
+|+|+||||||++||+.....+.+ +++. ..+|+|||++||+++.+. .||+|++|++|+|++.|+++|++.+
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~-~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDK-ILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHH-HHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 779999999999999999888864 5544 457999999999998865 5999999999999999999999753
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=8.8e-35 Score=315.50 Aligned_cols=181 Identities=24% Similarity=0.392 Sum_probs=145.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------eEEEcc
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAYVAQ 688 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------~~yv~Q 688 (1496)
.++++|++++|+ +++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|. ++|+||
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~ 77 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 77 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEee
Confidence 489999999994 47999999999999999999999999999999999999999999999983 689999
Q ss_pred CCccCC-CcHHHHhcc-----CCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 039402 689 SPWIQS-GKIEDNILF-----GKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762 (1496)
Q Consensus 689 ~~~i~~-~ti~eNI~~-----g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1496)
++.++. .|++||+.+ +...++++..+.++...+. + +.++..+||||||||++||||++++|+
T Consensus 78 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~---------~---~~~~~~~LSgG~~qrv~ia~al~~~~~ 145 (200)
T d1sgwa_ 78 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL---------D---LKKKLGELSQGTIRRVQLASTLLVNAE 145 (200)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC---------C---TTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred cccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCc---------c---cccccCcCCCcHHHHHHHHHHHhcCCC
Confidence 998864 599999864 4556666555555443321 1 234566899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccccCCEEEEEeC
Q 039402 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPAADLILVMKD 816 (1496)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~ 816 (1496)
++||||||++||+.+...+++.+.+...+ +.++|..+|+ +..||++.+|.+
T Consensus 146 llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~---l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE---LSYCDVNENLHK 197 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC---CTTSSEEEEGGG
T ss_pred EEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech---hhhcchhhheee
Confidence 99999999999999998888765544333 3333333343 456999998854
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.90 E-value=3.2e-21 Score=221.65 Aligned_cols=307 Identities=11% Similarity=0.073 Sum_probs=249.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 293 KAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIR 372 (1496)
Q Consensus 293 ~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 372 (1496)
+...+.||+.++...++.++..++..+.|++++.++|....+.+ ....+.+++++++..++..++.....+...+.+.+
T Consensus 8 ~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (319)
T d3b60a2 8 WPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD-RSVLLWMPLVVIGLMILRGITSYISSYCISWVSGK 86 (319)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT-HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhc
Confidence 34567789999999999999999999999999999986544332 22233344555556667778888888888999999
Q ss_pred HHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039402 373 MRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWY-IHDPWLVLFEVALSILILYKNLGIASLAALFGT 451 (1496)
Q Consensus 373 ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~~ 451 (1496)
+...++..+|+|.++++....+++++|++++++++|++.+.++... ........+.+++++++++......+++.++++
T Consensus 87 ~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~ 166 (319)
T d3b60a2 87 VVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLA 166 (319)
T ss_dssp HHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred cccchhhHHHHhhcccchhhccccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhccchhhhhhHH
Confidence 9999999999999999999999999999999999999999987644 344445556666666666655555666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 452 VIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVF 531 (1496)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~~ 531 (1496)
++...+.....++..+..++.++..++..+.+.|.++|+++||.+++|+.+.++.++..++..+...+............
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (319)
T d3b60a2 167 PIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPII 246 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHHHHHhcccch
Confidence 77777888888999999999999999999999999999999999999999999999988887777766666555554444
Q ss_pred HHHHHH--HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 039402 532 WGAPTF--VSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDD 600 (1496)
Q Consensus 532 ~~~p~~--v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e 600 (1496)
...+.+ +.++.++.+.+..+.+|+|.+++++.+...+..|+..+++.++.+.++.+|.+|+.++++.|+
T Consensus 247 ~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 247 QLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred hhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333333 333455666677889999999999999999999999999999999999999999999997765
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.90 E-value=3.7e-21 Score=221.76 Aligned_cols=306 Identities=15% Similarity=0.117 Sum_probs=248.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch----h--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 294 AMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFEN----E--GYVLVSAFCVAKLVECLCQRFRVFRLQ 367 (1496)
Q Consensus 294 al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~----~--g~~l~~~l~~~~~~~~l~~~~~~~~~~ 367 (1496)
.+.+.||+.++...++.++..++..+.|++++.++|.+..++.... . ...+++++++..++..++.....+...
T Consensus 7 ~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (323)
T d2hyda2 7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (323)
T ss_dssp HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999998865433211 1 122233344555667777777778888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039402 368 QLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGIASLA 446 (1496)
Q Consensus 368 ~~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~~~l~ 446 (1496)
+.+.+++..++..+|+|.++++....+++++|+++|++++|++.+.++.. .+...+...+.+++++++++......+++
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 166 (323)
T d2hyda2 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA 166 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHhhhHHHHHHHhhhhhcccccccccccccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999998754 45667777777777777777666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 447 ALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAI 526 (1496)
Q Consensus 447 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~ 526 (1496)
.++++++...+...+.+...+..++..+..++..+.+.|.++|+++||.+++|+.+.+++.+..++..+...+.......
T Consensus 167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~ 246 (323)
T d2hyda2 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY 246 (323)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhHHhhhhhh
Confidence 77777777778888899999999999999999999999999999999999999999999988877777766665555554
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 039402 527 SSFVFWGAPTF--VSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLD 599 (1496)
Q Consensus 527 ~~~~~~~~p~~--v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~ 599 (1496)
..........+ +.++.++.+.+..+.+++|.+++++.++..+..|+..+++.+..+.++.+|++||.++|++|
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e 321 (323)
T d2hyda2 247 SFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 44443333322 33445667777889999999999999999999999999999999999999999999999754
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.88 E-value=2.7e-20 Score=213.88 Aligned_cols=313 Identities=12% Similarity=0.097 Sum_probs=255.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 913 VYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATA 992 (1496)
Q Consensus 913 ~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~ 992 (1496)
.+|+|++...+ ...+.+++.++..+...+.++.++...+.............+..+++++.++..++.+++.++....
T Consensus 6 rl~~~~~~~k~--~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 83 (319)
T d3b60a2 6 RLWPTIAPFKA--GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWV 83 (319)
T ss_dssp HHHHHHGGGHH--HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 34555544322 2223334455666777777887776553221111111123345677777888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 039402 993 GYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFV 1072 (1496)
Q Consensus 993 ~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i 1072 (1496)
+.+...++++++++++++.|++||+++++|++++|+++|++.++..+...+..++..++.+++.++++...+|.++++++
T Consensus 84 ~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l 163 (319)
T d3b60a2 84 SGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILV 163 (319)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred hhccccchhhHHHHhhcccchhhccccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 039402 1073 PAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLG 1152 (1496)
Q Consensus 1073 p~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~ 1152 (1496)
..++++..+..++.+..++..+......+...+++.|.++|+.+||+|+.|+.+.+++.+..++..+..........+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (319)
T d3b60a2 164 VLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISD 243 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 88888888888888888888888888899999999999999999999999999999999999999888888777777777
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCC
Q 039402 1153 LRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEP 1227 (1496)
Q Consensus 1153 ~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~ 1227 (1496)
....++..+..+++.++ ......|.+++|.+...+.|...+..++..+...+.++++.++|.+|+.|+++.|+|+
T Consensus 244 ~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E~ 319 (319)
T d3b60a2 244 PIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK 319 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred cchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 77776666554444333 2334578899999999999999999999999999999999999999999999988763
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.85 E-value=8.9e-20 Score=210.08 Aligned_cols=313 Identities=14% Similarity=0.085 Sum_probs=246.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcc--cchH-----HHHHHHHHHHHHHHHHHH
Q 039402 912 SVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVV--TGST-----LLIVYVALAVGSSFCVLA 984 (1496)
Q Consensus 912 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~--~~~~-----~l~vy~~l~~~~~~~~~~ 984 (1496)
+.+++|++..++ .+...+++.++..++....++.+++..+......... .... +...++++.++..++.++
T Consensus 3 Krl~~~~k~~k~--~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 3 KRYLQFVKPYKY--RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHGGGHH--HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667654322 2223333445556666777777765542111111111 1111 112233445556677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 039402 985 RSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVA 1064 (1496)
Q Consensus 985 ~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 1064 (1496)
+.++....+.+...++++++++++++.|++|||+.++|++++|+++|++.++..+...+...+..++.+++.++++...+
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhhhcccccccccccccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhhh
Confidence 88888899999999999999999999999999999999999999999999999888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHH
Q 039402 1065 WQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHI 1144 (1496)
Q Consensus 1065 ~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~ 1144 (1496)
|.++++.++..+++..+..++.+..++..+......+...+++.|+++|+.+||+|+.|+++.+++.+..+...+.....
T Consensus 161 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~ 240 (323)
T d2hyda2 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240 (323)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhHH
Confidence 99999988888888888888999999999999999999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcC
Q 039402 1145 AAAMEWLGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCI 1223 (1496)
Q Consensus 1145 ~~~~~wl~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~ 1223 (1496)
.....+......++..+...+..++ ......|.+++|.+...++|...+...+..+...+.++.+.+.|.||+.++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~ 320 (323)
T d2hyda2 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 7777776666666665544444333 333457889999999999999999999999999999999999999999999986
Q ss_pred CCC
Q 039402 1224 PSE 1226 (1496)
Q Consensus 1224 ~~E 1226 (1496)
|+|
T Consensus 321 e~e 323 (323)
T d2hyda2 321 DYD 323 (323)
T ss_dssp CCS
T ss_pred CCC
Confidence 554
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.65 E-value=1.3e-17 Score=176.27 Aligned_cols=171 Identities=12% Similarity=0.042 Sum_probs=116.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHH
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWE 1354 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~ 1354 (1496)
||+|+|++|||||||++.|.|.++|..|.+.++|.+....+.+.........++.+.++..+...+........+.+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQ--- 78 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHH---
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcc---
Confidence 79999999999999999999999999999999998876555444333344445555555544443322111000000
Q ss_pred HHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCC--HHHHHHHHHHHHHhcCCc
Q 039402 1355 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD--TATDNLIQQTLRQHFSDC 1432 (1496)
Q Consensus 1355 aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD--~~Td~~Iq~~I~~~f~~~ 1432 (1496)
...+|+|++|+.++++++.++|++|++|||+...+ .+....+.+.+++ .++
T Consensus 79 -------------------------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~~ 131 (178)
T d1ye8a1 79 -------------------------YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNV 131 (178)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTS
T ss_pred -------------------------hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhcc--CCC
Confidence 01358999999999999999999999999865433 2333333333332 368
Q ss_pred EEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHH
Q 039402 1433 TVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVA 1480 (1496)
Q Consensus 1433 TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~ 1480 (1496)
|+|.++|+......||++..+++|++++-+.. +++..+.+.++
T Consensus 132 ~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~-----nrd~~~~~i~~ 174 (178)
T d1ye8a1 132 NVVATIPIRDVHPLVKEIRRLPGAVLIELTPE-----NRDVILEDILS 174 (178)
T ss_dssp EEEEECCSSCCSHHHHHHHTCTTCEEEECCTT-----TTTTHHHHHHH
T ss_pred EEEEEEccHHHHHhhceEEEEeCCEEEEECCc-----cHHHHHHHHHH
Confidence 99999999988888999999999999987642 23444555543
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.50 E-value=1.2e-15 Score=160.82 Aligned_cols=147 Identities=11% Similarity=0.034 Sum_probs=99.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeE--EEccC-----------CccCCCcHHHHhccCCCCCHHHHHH
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA--YVAQS-----------PWIQSGKIEDNILFGKEMNRERYNA 714 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~--yv~Q~-----------~~i~~~ti~eNI~~g~~~~~~~~~~ 714 (1496)
+++|+||||||||||+++|+|++++..|.+.+.+... +-.|. +.....+...+..+++
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS--------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT---------
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhh---------
Confidence 5899999999999999999999999999998875321 11111 1111111111111111
Q ss_pred HHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCc
Q 039402 715 VLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSK 793 (1496)
Q Consensus 715 v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~ 793 (1496)
..+......+|+|+++|.++++++.++|+++++|||....+. .....+.+...+. .++
T Consensus 73 -------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~~ 131 (178)
T d1ye8a1 73 -------------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPNV 131 (178)
T ss_dssp -------------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTTS
T ss_pred -------------------hhcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchh--hHHHHHHHHHHhccCCC
Confidence 001112235899999999999999999999999998554432 2233333333333 368
Q ss_pred EEEEEccCcCccccCCEEEEEeCCeEEEecC
Q 039402 794 TVIYVTHQVEFLPAADLILVMKDGKITQAGK 824 (1496)
Q Consensus 794 tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~ 824 (1496)
|+|+++|+.+..+.+|++..+++|+++..++
T Consensus 132 ~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 132 NVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp EEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred EEEEEEccHHHHHhhceEEEEeCCEEEEECC
Confidence 9999999988777899999999999987654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.07 E-value=2.1e-10 Score=136.66 Aligned_cols=73 Identities=25% Similarity=0.338 Sum_probs=62.0
Q ss_pred CCCCchHHHHHHHHHHH----ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEE
Q 039402 1381 ENWSMGQRQLVCLGRVL----LKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLL 1453 (1496)
Q Consensus 1381 ~nLS~GQrQll~LARAL----Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL 1453 (1496)
..+|||||.+++||-.+ +.+++|++||||+++||+.+...+.+.|++.. .++-+|+|||+..+...+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 45799999998776433 46788999999999999999999999998764 456699999999999999998754
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.87 E-value=5.3e-09 Score=119.05 Aligned_cols=76 Identities=22% Similarity=0.334 Sum_probs=66.5
Q ss_pred CCCCchHHHHHHHHHHH----ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEE--Ee
Q 039402 1381 ENWSMGQRQLVCLGRVL----LKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLL--LN 1454 (1496)
Q Consensus 1381 ~nLS~GQrQll~LARAL----Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlV--L~ 1454 (1496)
..+|.|||+++.++..+ ..+++++++|||-++||+.....+.+.|++..++.=||++||+...+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEe
Confidence 35899999998776653 3467899999999999999999999999999999999999999999999999855 77
Q ss_pred CC
Q 039402 1455 HG 1456 (1496)
Q Consensus 1455 ~G 1456 (1496)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
Confidence 77
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.67 E-value=1.6e-07 Score=106.42 Aligned_cols=77 Identities=27% Similarity=0.330 Sum_probs=63.2
Q ss_pred CCCCChHHHHHHHHHHHH----ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEE--
Q 039402 740 GINLSGGQKQRIQIARAL----YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILV-- 813 (1496)
Q Consensus 740 g~~LSGGQkqRv~LARAl----~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~-- 813 (1496)
-..+|+|||+...++..+ ..++.++++|||-++|||...+.+.+ .++...++.-+|++||+++++..+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~-~l~~~~~~~QviitTHsp~~~~~~d~~~~v~ 295 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENSKHTQFIVITHNKIVMEAADLLHGVT 295 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHTTTSEEEEECCCTTGGGGCSEEEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHH-HHHHhccCCEEEEEECCHHHHHhcccEEEEE
Confidence 357999999998877654 35678999999999999999888865 45555567889999999999999999865
Q ss_pred EeCC
Q 039402 814 MKDG 817 (1496)
Q Consensus 814 l~~G 817 (1496)
+++|
T Consensus 296 ~~~g 299 (308)
T d1e69a_ 296 MVNG 299 (308)
T ss_dssp ESSS
T ss_pred EeCC
Confidence 5666
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.16 E-value=1.1e-06 Score=103.55 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=58.7
Q ss_pred CCCChHHHHHHHHHHHH----ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCccccCCEEEEE
Q 039402 741 INLSGGQKQRIQIARAL----YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPAADLILVM 814 (1496)
Q Consensus 741 ~~LSGGQkqRv~LARAl----~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l 814 (1496)
..||||||.+++||-.+ +.++++++||||+++||+.....+.+. +.... .+.-+|++||+++.+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~-l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAY-IRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHH-HHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 56799999998876433 467889999999999999998887654 44433 344699999999999999998755
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=7.7e-06 Score=84.11 Aligned_cols=160 Identities=11% Similarity=0.029 Sum_probs=86.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCC------CCCc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL------EEST 1348 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~------~~~s 1348 (1496)
.|.|+|++|+|||||++.+.+.+....+.+.+.+.+........+...+.-+.|+...+.....++.... ....
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVV 82 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccccccccccccccccccchhhhhhhhhhhhhhhhhccccccccc
Confidence 5899999999999999999999988777776666554433333333344444555443332222332211 1111
Q ss_pred H-HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHH
Q 039402 1349 D-EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQ 1427 (1496)
Q Consensus 1349 d-~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~ 1427 (1496)
+ +++.+. ....+...-.....+.+..+.+.....+......+++.+.++..++++++...+..-+... .+.+.+++
T Consensus 83 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 159 (189)
T d2i3ba1 83 DLTSFEQL-ALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPL--ALVEEIRN 159 (189)
T ss_dssp CHHHHHTT-TTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCC--TTHHHHHT
T ss_pred cHHHHHHH-HHHHHHHHHHHhhcCCCeeEeeccccchhhhHHHHHHHHHHhccCceEEEeccccCCcchH--HHHHHHhC
Confidence 2 222111 1111111111122345566666666778888888898889898887765543332222211 12233332
Q ss_pred hcCCcEEEEEc
Q 039402 1428 HFSDCTVLTIA 1438 (1496)
Q Consensus 1428 ~f~~~TVI~IA 1438 (1496)
.++.+++.++
T Consensus 160 -~~~~~~~~lt 169 (189)
T d2i3ba1 160 -RKDVKVFNVT 169 (189)
T ss_dssp -TCCSEEEECC
T ss_pred -CCCCeEEEEC
Confidence 3456666554
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.35 E-value=0.0004 Score=74.06 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=38.2
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCcc
Q 039402 759 QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFL 805 (1496)
Q Consensus 759 ~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l 805 (1496)
.+..++|+||+..+=|+..+..+...+++.+. .+.+++++||..+..
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~ 160 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELT 160 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhh
Confidence 44569999999999999999998877776654 377899999986653
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.00048 Score=74.01 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=34.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hC-CcEEEEEccCcCc
Q 039402 760 DSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LS-SKTVIYVTHQVEF 804 (1496)
Q Consensus 760 ~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvilvtH~~~~ 804 (1496)
+..++|+||+..+=|+..+..+...+++.+ .+ +..+|++||..+.
T Consensus 120 ~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 120 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred cccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHH
Confidence 445999999999999999998877666555 34 3567777877654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.0031 Score=62.82 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccC
Q 039402 744 SGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAA 808 (1496)
Q Consensus 744 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~ 808 (1496)
...++..+..+...+.++|+++++=.-..-+.....+.+.+.+.....++.+|+|-+..+..+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~ 128 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGET 128 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCC
T ss_pred ccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhH
Confidence 34566677778888899998766433333333223334444555444577888888887765443
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.80 E-value=0.0022 Score=70.23 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=26.6
Q ss_pred ceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1263 Lk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
|+.+.-=+.|||.+.|.|+||+||||++.-+..
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 444443479999999999999999999877763
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.68 E-value=0.0003 Score=79.35 Aligned_cols=90 Identities=19% Similarity=0.279 Sum_probs=55.3
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEccccc----ccccchhhccCC
Q 039402 1268 CTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPV----MFEGTVRSNLDP 1343 (1496)
Q Consensus 1268 ~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~----LF~gTIR~NLdp 1343 (1496)
.-++.|..+.|+|+|||||||++++|++.++|..=-|+|- |..++.+..-++.+..-.+..+ ++...+|.+-|.
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE--d~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~ 238 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE--DTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDR 238 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE--SSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSE
T ss_pred HHHHhCCCEEEEeeccccchHHHHHHhhhcccccceeecc--chhhhhcccccccceeccccchhHHHHHHHHhccCCCc
Confidence 3356677799999999999999999999998876666673 3344433222233333333221 222334444441
Q ss_pred --CCCCcHHHHHHHHHHc
Q 039402 1344 --LEESTDEQIWEALDKC 1359 (1496)
Q Consensus 1344 --~~~~sd~eI~~aL~~~ 1359 (1496)
.++..+.|.+++++.+
T Consensus 239 iivgEiR~~ea~~~l~a~ 256 (323)
T d1g6oa_ 239 IILGELRSSEAYDFYNVL 256 (323)
T ss_dssp EEESCCCSTHHHHHHHHH
T ss_pred ccCCccCchhHHHHHHHH
Confidence 3566666777777654
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.40 E-value=0.011 Score=60.04 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
+|+|||++|+|||||++.|+|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999874
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.39 E-value=0.0096 Score=63.35 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=25.0
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+++|+++.|.|++|||||+|+.-++-..
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998776553
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.013 Score=63.58 Aligned_cols=31 Identities=32% Similarity=0.425 Sum_probs=24.9
Q ss_pred ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1261 ~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
.++.|+ .||+.+-|+|++|+|||||+..|.-
T Consensus 21 ~li~G~----~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 21 YVLPNM----VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EEETTE----ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHhCCc----cCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 355553 4699999999999999999977653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.14 E-value=0.0013 Score=69.57 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=26.9
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEE
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK 678 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~ 678 (1496)
+|+.++++|++|+|||||++.|.|......|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 5899999999999999999999998776666664
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.12 E-value=0.0015 Score=66.91 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
=||||+|++|+|||||+++|++-
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 37999999999999999999874
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.94 E-value=0.019 Score=62.22 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.2
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHh
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCIL 667 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~il 667 (1496)
.+|+++.|.|+.|+|||||+..|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999986654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.0013 Score=66.07 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCC
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPA 1300 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~ 1300 (1496)
.++|+|++|||||||++.|.+-+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 58999999999999999998766543
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.82 E-value=0.0011 Score=70.27 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=23.0
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEE
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLK 678 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~ 678 (1496)
+|+.++++|++|+|||||+++|+|+.....|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 5889999999999999999999998776666664
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.77 E-value=0.0017 Score=65.58 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1308 (1496)
.|+.|.|+|++||||||+.++|.+-+.. --+.+||
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC--CEEEecH
Confidence 5889999999999999999999876532 1345555
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.77 E-value=0.0014 Score=67.28 Aligned_cols=27 Identities=30% Similarity=0.662 Sum_probs=24.9
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCCCC
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEVPK 672 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~~~ 672 (1496)
|.+++|+||+|||||||.+.|..+++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 889999999999999999999988764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.73 E-value=0.015 Score=58.76 Aligned_cols=25 Identities=44% Similarity=0.534 Sum_probs=21.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
++-+.|-++|.+||||||+++.|+.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4447889999999999999998864
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.72 E-value=0.0034 Score=61.74 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcC
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
+++.|+|++|||||||.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999988654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.72 E-value=0.0031 Score=62.12 Aligned_cols=32 Identities=28% Similarity=0.315 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1308 (1496)
+.|.|+|++||||||+++.|.+- ..|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~---~~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh---CCCCEEech
Confidence 45789999999999999988653 235555543
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.71 E-value=0.0019 Score=66.86 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
+|+|||++|+|||||+++|+|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 6999999999999999999974
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.61 E-value=0.0017 Score=66.58 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
|..|.|+||+|||||||++.|..-++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987654
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.61 E-value=0.00034 Score=72.34 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=27.9
Q ss_pred ceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHh
Q 039402 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667 (1496)
Q Consensus 635 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~il 667 (1496)
.+++.++++.+| +++|+|||||||||++.+|.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 357778888776 99999999999999999995
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.57 E-value=0.0016 Score=65.38 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPK 672 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~ 672 (1496)
+++|+|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987654
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.52 E-value=0.0035 Score=66.20 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEE
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ 1305 (1496)
+|+...++|.||.|||||+++|.+-....-|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 5899999999999999999999886655555543
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.45 E-value=0.021 Score=62.05 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=28.7
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhc
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG 668 (1496)
-+.|+++.-=+.+|+++.|.|++|+|||||+.-++-
T Consensus 22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 345666544479999999999999999999877763
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.41 E-value=0.0027 Score=63.84 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCC
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPA 1300 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~ 1300 (1496)
.+||+|++|||||||+..|.+.+...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 57999999999999999998877654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.41 E-value=0.004 Score=62.58 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=24.1
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.|++++|+||+||||||+.+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998875
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.0039 Score=62.01 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcc
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
|=||+++|++|+|||||++.|++-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 558999999999999999999864
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.17 E-value=0.012 Score=67.92 Aligned_cols=108 Identities=20% Similarity=0.176 Sum_probs=67.7
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEE-EEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchh
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL-KLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLK 722 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i-~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~ 722 (1496)
.++-++.|.||+||||||.+.+++.+++....+| .+...+-|.- ++.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~--~~~------------------------------ 203 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI--DGI------------------------------ 203 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC--SSS------------------------------
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCccccc--CCC------------------------------
Confidence 4566899999999999999999999876543332 3322111100 000
Q ss_pred hHHHhccCCCccccc-CCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccC
Q 039402 723 KDLEILSFGDQTVIG-ERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQ 801 (1496)
Q Consensus 723 ~d~~~l~~g~~t~ig-~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~ 801 (1496)
.++.+. +.+.+ ---+|..+|=+||||++.+|.- |+++++..+ +....|..|+-.-|-
T Consensus 204 ---------~q~~v~~~~~~~------~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa 261 (401)
T d1p9ra_ 204 ---------GQTQVNPRVDMT------FARGLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHT 261 (401)
T ss_dssp ---------EEEECBGGGTBC------HHHHHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECC
T ss_pred ---------CeeeecCCcCCC------HHHHHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEecc
Confidence 000111 11111 2345777888999999999997 777766544 445578888888887
Q ss_pred cCcc
Q 039402 802 VEFL 805 (1496)
Q Consensus 802 ~~~l 805 (1496)
-+-.
T Consensus 262 ~~a~ 265 (401)
T d1p9ra_ 262 NTAV 265 (401)
T ss_dssp SSSH
T ss_pred CchH
Confidence 5543
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.16 E-value=0.019 Score=61.24 Aligned_cols=45 Identities=13% Similarity=0.384 Sum_probs=35.6
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhc
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVI 1445 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~ 1445 (1496)
+.+++++||+-. +..+....+.+.+.+.-.++.+|++|++++-+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~ 175 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 175 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSC
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccchh
Confidence 467999999954 788888888888877666778899999886543
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.14 E-value=0.0021 Score=65.05 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=26.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCccEEE
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPKISGTLK 678 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~ 678 (1496)
.+.|+||+|+|||||++.++..+....+.+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~ 33 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 5889999999999999999999876655543
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.10 E-value=0.0035 Score=64.12 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
.|||||++++|||||+++|+|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.05 E-value=0.0043 Score=63.17 Aligned_cols=22 Identities=41% Similarity=0.419 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
.|+|||++|+|||||+++|+|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999873
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.97 E-value=0.0032 Score=63.93 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
=+|+|||++++|||||+++|++--
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999998853
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.96 E-value=0.0066 Score=64.68 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=24.0
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
+++|+.+-|.|++|||||||+.-+..-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 889999999999999999999766543
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.96 E-value=0.0032 Score=63.35 Aligned_cols=27 Identities=22% Similarity=0.200 Sum_probs=23.8
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCCCC
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVPKI 673 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~~~ 673 (1496)
.+++|+|++|||||||+..|+.++...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 368999999999999999999888754
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.94 E-value=0.0048 Score=66.97 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
+|+++|+||+|||||+++|+|-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5999999999999999999984
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.91 E-value=0.0046 Score=62.45 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.+|+|+|++|||||||+++|..-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998865
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.91 E-value=0.0058 Score=61.60 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
+|+|+|++|+|||||++.|+|-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999873
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.89 E-value=0.0039 Score=63.49 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcc
Q 039402 1276 TGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1276 vgIVGrTGSGKSTLl~~L~rl 1296 (1496)
|||+|++|+|||||++.|+|-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999874
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.83 E-value=0.0056 Score=62.68 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
.|||.|++|||||||.+.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 599999999999999999987665
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.81 E-value=0.018 Score=62.56 Aligned_cols=175 Identities=19% Similarity=0.269 Sum_probs=99.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc--CCCccEEEECCeeCCCCChHHHhcccEEEcccc-cccccchhhcc-C-CCC-CCc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV--EPAAGQILIDGIDISLIGLHDLRSRLSIIPQDP-VMFEGTVRSNL-D-PLE-EST 1348 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~gTIR~NL-d-p~~-~~s 1348 (1496)
.|||+|..|+|||||+.+|+..- ....|++. +|..+.+...++-.+++++-+.-. +.++|. +-|+ | |.. ++.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~-~~n~iDtPGh~dF~ 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRGH-RVFLLDAPGYGDFV 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETTE-EEEEEECCCSGGGH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeEEeeccccccccc-ceeEEccCchhhhh
Confidence 47999999999999999995432 12345543 666777777888777777655432 334443 4565 4 643 333
Q ss_pred HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEE---EcCCCCCCHHHHHHHHHHH
Q 039402 1349 DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILML---DEATASVDTATDNLIQQTL 1425 (1496)
Q Consensus 1349 d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiL---DEaTsslD~~Td~~Iq~~I 1425 (1496)
.|...++..+...=.|- +.......+-++.+-.|+. .+.|.++++ |.+ + |.. + ..+.+
T Consensus 82 -~e~~~al~~~D~avlvv-----------da~~Gv~~~t~~~~~~~~~-~~~p~~i~iNk~D~~-~--~~~--~-~l~~~ 142 (267)
T d2dy1a2 82 -GEIRGALEAADAALVAV-----------SAEAGVQVGTERAWTVAER-LGLPRMVVVTKLDKG-G--DYY--A-LLEDL 142 (267)
T ss_dssp -HHHHHHHHHCSEEEEEE-----------ETTTCSCHHHHHHHHHHHH-TTCCEEEEEECGGGC-C--CHH--H-HHHHH
T ss_pred -hhhhhhhcccCceEEEe-----------eccCCccchhHHHHHhhhh-ccccccccccccccc-c--cch--h-hhhhH
Confidence 45666787775321111 1112245556666666664 245666663 653 2 332 2 23445
Q ss_pred HHhcCCcEEEEEc----cCcchhcc--cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1426 RQHFSDCTVLTIA----HRITSVID--SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1426 ~~~f~~~TVI~IA----HRl~ti~~--~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
++.+..+.-+.+= -....+.| ..+.+..++|.-.+..-|.++.+.
T Consensus 143 ~~~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~~ 193 (267)
T d2dy1a2 143 RSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERER 193 (267)
T ss_dssp HHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHH
T ss_pred HHHhccCcCeEeeeccCCceeEEeecCcceEEEecCCCCceeeCCHHHHHH
Confidence 5555433222221 12223333 566777788888777777776543
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.81 E-value=0.0061 Score=61.65 Aligned_cols=22 Identities=45% Similarity=0.607 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
.|+|+|++|+|||||+++|+|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999973
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.78 E-value=0.019 Score=61.03 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.8
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHh
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCIL 667 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~il 667 (1496)
+++|+++.|.||+|||||||..-++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7999999999999999999987554
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.056 Score=57.34 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=29.5
Q ss_pred cCCCEEEEEcCCCCCCHHHHHHHH-HHHHHhc--CCcEEEEEccCcch
Q 039402 1399 KRSKILMLDEATASVDTATDNLIQ-QTLRQHF--SDCTVLTIAHRITS 1443 (1496)
Q Consensus 1399 r~~~ILiLDEaTsslD~~Td~~Iq-~~I~~~f--~~~TVI~IAHRl~t 1443 (1496)
.+..++++||.-.+=|+..-..+- ..++... .++.+|+.+|-...
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred ccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHH
Confidence 345699999998888876654443 3444332 35678888886543
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.74 E-value=0.06 Score=56.65 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=32.1
Q ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcch
Q 039402 1399 KRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITS 1443 (1496)
Q Consensus 1399 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~t 1443 (1496)
.+..++++||.-.+=|++.-..+-..+-+.+ .+++++++||..+.
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL 159 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFEL 159 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHH
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhh
Confidence 3456999999999999876555444444433 37889999997554
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.73 E-value=0.0064 Score=61.07 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.8
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
++|-.|.|+|.+||||||+.++|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987653
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.73 E-value=0.006 Score=68.41 Aligned_cols=37 Identities=32% Similarity=0.625 Sum_probs=29.8
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL 679 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~ 679 (1496)
++.|.-+.|+|++|||||||+++|++++++..=-|.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 3445568999999999999999999999986544443
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.72 E-value=0.007 Score=60.64 Aligned_cols=28 Identities=32% Similarity=0.578 Sum_probs=24.9
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
|+|-.++|+||+||||||+.+.|.-.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999987653
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.70 E-value=0.0067 Score=62.52 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.++|+|++|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999863
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.65 E-value=0.019 Score=60.03 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=16.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
..+.+||+||+||||.+-=|...+.
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp EEEEEECSCCC----HHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999998766665554
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.65 E-value=0.03 Score=64.47 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
.++-.|-|.|||||||||.+.++++...
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 3566799999999999999999998764
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.64 E-value=0.007 Score=60.72 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=24.1
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
++|.++.++|++||||||+.+.|.-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999998654
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.61 E-value=0.0082 Score=60.14 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=24.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
|+|-+|.|.|++||||||+.+.|..-+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 568899999999999999999998765
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.60 E-value=0.0026 Score=63.36 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
||+++|++|+|||||+++|+|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999873
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.60 E-value=0.0063 Score=63.65 Aligned_cols=27 Identities=37% Similarity=0.584 Sum_probs=24.6
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+|.+++|+||+|||||||.+.|+-..|
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 589999999999999999999987765
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.52 E-value=0.0071 Score=60.95 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.8
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCC
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
..++|+||.|||||||.+.|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.51 E-value=0.008 Score=60.09 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.9
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
..+.++.|+|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998754
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.48 E-value=0.0065 Score=61.32 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcc
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
.-||++||++|+|||||++.|.+=
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999764
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.44 E-value=0.04 Score=59.30 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
.-+.+.||+|||||++.++|+.++.
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEeeCCCCCCccHHHHHHHHHcC
Confidence 4578999999999999999998764
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.39 E-value=0.0089 Score=62.50 Aligned_cols=50 Identities=24% Similarity=0.477 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccC--------------CCccEEEECCeeCCCCChHHHhccc
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVE--------------PAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~e--------------p~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
.|..+.|+||||||||||.+.|+.-.+ |..|+ +||+|.--++.+...+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E--~~G~dY~Fvs~~~F~~~i 64 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE--VHGEHYFFVNHDEFKEMI 64 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccc--cccccceeecHHHHHHHh
Confidence 488899999999999999999976543 22233 467666666666655543
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.37 E-value=0.0088 Score=59.26 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
||+|||++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999998763
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.35 E-value=0.0041 Score=65.85 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEE
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ 1305 (1496)
+|++..++|.||+|||||+++|.+-....-|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 4788999999999999999999986655556554
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.32 E-value=0.01 Score=62.13 Aligned_cols=39 Identities=28% Similarity=0.244 Sum_probs=29.4
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCCCc--cEEEECCe
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA--GQILIDGI 1309 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~--G~I~IDG~ 1309 (1496)
++|..|-+.|.+|||||||.+.|..-+.... -.+.+||-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD 62 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 62 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcch
Confidence 5788899999999999999999985442112 35677773
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.26 E-value=0.0073 Score=62.01 Aligned_cols=44 Identities=36% Similarity=0.705 Sum_probs=30.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcccC-------------CCccEEEECCeeCCCCChHHHhc
Q 039402 1276 TGIVGRTGSGKSTLIQTLFRIVE-------------PAAGQILIDGIDISLIGLHDLRS 1321 (1496)
Q Consensus 1276 vgIVGrTGSGKSTLl~~L~rl~e-------------p~~G~I~IDG~dI~~i~l~~LR~ 1321 (1496)
|.|+|||||||+||++.|+.-.+ |..|+ +||+|..-++.+....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~~ 60 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKS 60 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCC--cCCccceeccHHHHHH
Confidence 78999999999999999966432 23443 3666666566555443
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.25 E-value=0.01 Score=68.56 Aligned_cols=23 Identities=48% Similarity=0.666 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
+|||+|+||+|||||+|+|+|.-
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.25 E-value=0.042 Score=55.59 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.+||+|++|+|||||+++|+|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.24 E-value=0.037 Score=59.64 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
+...+-+.||+|+|||+++++|.+.+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 345678999999999999999998763
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=94.21 E-value=0.0012 Score=68.05 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=28.0
Q ss_pred ceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 039402 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1263 Lk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
.++.++.+.+| .+.|+|+|||||||++.||.-.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 56777888775 8899999999999999999644
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.20 E-value=0.01 Score=58.38 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.|||++|+|||||++.|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999999875
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.16 E-value=0.011 Score=59.03 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
...|.|.|++||||||+.++|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999999874
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.14 E-value=0.0095 Score=59.59 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=23.4
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
.+++.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.13 E-value=0.011 Score=58.19 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||++||++|+|||||++.|.+
T Consensus 2 KI~liG~~nvGKSSLln~l~~ 22 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKN 22 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999987
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.11 E-value=0.01 Score=59.19 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
+.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999998765
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.11 E-value=0.011 Score=61.89 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.|||.|++||||||+.+.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997665
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.10 E-value=0.011 Score=60.36 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
++||.|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999875443
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.08 E-value=0.0092 Score=59.40 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
.++.|+||+||||||+.+.|...++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998764
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.04 E-value=0.055 Score=58.52 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=24.3
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
+++..-+-+.|++|+|||+|++++.+...
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 44455688999999999999999998773
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.97 E-value=0.011 Score=59.61 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCCcc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1302 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G 1302 (1496)
..|+|.|++||||||+++.|...+.....
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~ 30 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGV 30 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999887755433
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.94 E-value=0.012 Score=59.89 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
.|||||++.||||||+++|.+.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEeCCCCcHHHHHHHHHHh
Confidence 3999999999999999999864
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.86 E-value=0.011 Score=58.88 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
+|.|+|++||||||+.+.|..-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999997654
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.025 Score=56.61 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||++||.+|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998765
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.82 E-value=0.082 Score=54.82 Aligned_cols=44 Identities=25% Similarity=0.260 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG 1315 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~ 1315 (1496)
.+..+++||+||+||||.+-=|...+.-..-+|.+=..|...++
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~g 48 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAA 48 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecccccc
Confidence 46788999999999999987777666544445555555554444
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.78 E-value=0.012 Score=62.17 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=33.2
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID 1446 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~ 1446 (1496)
+.+|+++||.= .+.......+.+.+.+....+.+|.++++.+.+..
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~ 154 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIE 154 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred CceEEeehhhh-hcchhHHHHHhhhcccCCcceEEEeccCChhhchH
Confidence 67899999973 33344455677777776677888999998877654
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.72 E-value=0.079 Score=56.59 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhccc
Q 039402 1276 TGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1276 vgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
+-+.||.|+|||+++++|.+..
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6799999999999999999754
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.64 E-value=0.14 Score=55.27 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=24.0
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
++..-+.+.||+|+|||+|.+++++++.
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 3444588999999999999999999874
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.62 E-value=0.016 Score=58.74 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.++|+|++|+|||||++.|.|.-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.62 E-value=0.014 Score=58.01 Aligned_cols=31 Identities=32% Similarity=0.405 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1308 (1496)
.|.|+|++||||||+++.|.+-+. +...++|
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 588999999999999999998764 4455554
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.55 E-value=0.016 Score=58.17 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.++|+|+.|+|||||++.|+|.-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.49 E-value=0.014 Score=59.42 Aligned_cols=25 Identities=16% Similarity=0.437 Sum_probs=22.1
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
..++|+||+|+||+||++.|+.+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 5799999999999999999987654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.48 E-value=0.011 Score=59.73 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=22.8
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCCCC
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEVPK 672 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~~~ 672 (1496)
+.+++|.|++||||||+.+.|.-.+..
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999765543
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.45 E-value=0.016 Score=59.90 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
+|+|||++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999863
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=0.012 Score=60.12 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.2
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+|.++.++|++||||||+.+.|.-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999997654
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.38 E-value=0.013 Score=65.72 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccCC
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEP 1299 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl~ep 1299 (1496)
.-+|||.|+.|||||||+..|.+.+..
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 358999999999999999999876643
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.36 E-value=0.016 Score=57.63 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.++|+||+||||||+.+.|.-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997543
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.30 E-value=0.021 Score=58.41 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=24.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
|+|-+|.|+|+.||||||+.+.|..-+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999998654
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.29 E-value=0.033 Score=60.23 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=28.2
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 675 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G 675 (1496)
=+++|.++-|.||+|||||||+-.++.......|
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~ 83 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 83 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCC
Confidence 4689999999999999999999888776654433
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.032 Score=55.62 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
-||.|+|..|+|||||++.+..
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3899999999999999999864
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.23 E-value=0.018 Score=56.52 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.+.++||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998765
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.21 E-value=0.018 Score=60.96 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+++|+|+.|||||||++.|+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 68999999999999999998643
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.13 E-value=0.015 Score=59.44 Aligned_cols=23 Identities=39% Similarity=0.788 Sum_probs=21.0
Q ss_pred EEEEecCCCcHHHHHHHHhcCCC
Q 039402 649 VAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 649 ~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
++|+||+||||+||++.|+.+.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987765
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.11 E-value=0.021 Score=57.70 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+++|+|++|+|||||++.|+|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.10 E-value=0.02 Score=56.13 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.|-|+|++||||||+.++|..-+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.09 E-value=0.016 Score=64.10 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=33.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccch
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTV 1337 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTI 1337 (1496)
.|||.|++||||||+.+.|..++.-..+ ..++.+|++|.+..+...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~ 127 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQV 127 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcC-----------------CCceEEEeeeeeECCchH
Confidence 6899999999999999999887642111 124667777777665443
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.97 E-value=0.026 Score=57.28 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEecCCCcHHHHHHHHhcC
Q 039402 649 VAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 649 ~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
+||+|++.+|||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=92.97 E-value=0.02 Score=56.03 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
+++|+|+.|+|||||++.+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.96 E-value=0.013 Score=59.85 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
.|-.|-++|.+||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 477899999999999999999987653
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.92 E-value=0.023 Score=57.03 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=21.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
-+++++|++|+|||||++.+.|...
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4799999999999999999988653
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.84 E-value=0.024 Score=57.84 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=23.9
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
|+|-.++|+||.||||||..+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999998543
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.83 E-value=0.044 Score=54.72 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||..|+|||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 899999999999999998753
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=92.82 E-value=0.015 Score=59.04 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHhcC
Q 039402 649 VAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 649 ~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
|||+|++++|||||++.|.|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999875
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.79 E-value=0.022 Score=56.17 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+++|||.+|+|||||++.+.+.-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=92.78 E-value=0.025 Score=56.19 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
||.|||+.|+|||||++.|.+-
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 7999999999999999998763
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.72 E-value=0.028 Score=57.70 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=25.1
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+++|+++.|.||+|||||||+..++...
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998777544
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=92.71 E-value=0.02 Score=57.95 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHhcCC
Q 039402 649 VAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 649 ~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+||+|++|+|||||++.|.|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999864
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.67 E-value=0.024 Score=55.52 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+++++|++|+|||||++.+.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999853
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.66 E-value=0.027 Score=57.20 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.-|.|+|||||||+||++.|.+-.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999988543
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.63 E-value=0.028 Score=57.52 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+..+++|+||.||||||+.+.|+-.+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998654
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.60 E-value=0.028 Score=56.44 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
.|+|+|.+|+|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.56 E-value=0.026 Score=58.20 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
.|.+||++||||||+++.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999998664
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.50 E-value=0.025 Score=58.29 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.++|+|++|+|||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.48 E-value=0.027 Score=58.70 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=27.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCccEEEEc-CeeEEEccCCc
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC-GTKAYVAQSPW 691 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~-g~~~yv~Q~~~ 691 (1496)
++||.|++||||||+.+.|.-.+..... ... -.+..++++.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~--~~~~~~~~vi~~D~y 46 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEV--DYRQKQVVILSQDSF 46 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGS--CGGGCSEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchhcc--ccCCCceEEEecccc
Confidence 6899999999999999988765532110 001 12456677655
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.48 E-value=0.032 Score=58.86 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.|+|+|+.|||||||++.|.+-.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=92.47 E-value=0.036 Score=54.97 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+++|+|+.|+|||||++.+.|...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 589999999999999999998653
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.45 E-value=0.027 Score=56.37 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.7
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
++.=||.|||+.|||||||++.|.+
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhc
Confidence 3445899999999999999999876
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.43 E-value=0.048 Score=54.46 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.|||.+|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998754
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.38 E-value=0.03 Score=60.42 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.++|+|++|+|||||++.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999974
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.37 E-value=0.14 Score=54.06 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=34.6
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc
Q 039402 1401 SKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID 1446 (1496)
Q Consensus 1401 ~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~ 1446 (1496)
.+|+|+||+=. ++.+....+.+.|.+.-.++.+|++|++++-+..
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~ 160 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 160 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCccccCh
Confidence 57999999954 6677777777777665567889999999877654
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.28 E-value=0.032 Score=56.35 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.9
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhc
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG 668 (1496)
++-+++.++|++||||||+.+.++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998864
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.27 E-value=0.064 Score=56.91 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.1
Q ss_pred EEEEecCCCcHHHHHHHHhcCC
Q 039402 649 VAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 649 ~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+.+.||.|+||||+.++++.++
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6899999999999999998765
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=92.23 E-value=0.02 Score=57.63 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.++|+|++++|||||+++|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999864
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.10 E-value=0.041 Score=56.42 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.9
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
+++|+.+-|.|++|||||||+.-+..
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 79999999999999999999987764
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.08 E-value=0.03 Score=57.41 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.2
Q ss_pred EEEEecCCCcHHHHHHHHhcCCC
Q 039402 649 VAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 649 ~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
++|+||+|||||||.+.|+-+.+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999876543
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.99 E-value=0.11 Score=53.88 Aligned_cols=40 Identities=28% Similarity=0.272 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL 1313 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~ 1313 (1496)
..+.+||+||+||||.+-=|...+.-..-+|.+=..|.-.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R 49 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 49 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence 4689999999999998877776655333344444444433
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.88 E-value=0.036 Score=55.39 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||.+|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 699999999999999998865
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.83 E-value=0.035 Score=56.87 Aligned_cols=21 Identities=43% Similarity=0.732 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcc
Q 039402 1276 TGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1276 vgIVGrTGSGKSTLl~~L~rl 1296 (1496)
|.|+||||||||||++.|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998654
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.72 E-value=0.039 Score=57.92 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=34.0
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhc
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVI 1445 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~ 1445 (1496)
+.+++++||+= .+.......+.+.|.+..+.+-++++++..+.+.
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~ 143 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKLT 143 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred CeEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHHhH
Confidence 35799999985 5677778888888887766777777877765544
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.68 E-value=0.039 Score=56.39 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=24.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCCccEEEEC
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID 1307 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ID 1307 (1496)
..|.|+|+.||||||+.+.|..-+ |-+.|+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH----CCceEc
Confidence 578999999999999999998755 555554
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.68 E-value=0.039 Score=55.23 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.|||+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 699999999999999999875
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.63 E-value=0.2 Score=51.69 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhc
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVI 1445 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~ 1445 (1496)
+.+|+|+||+= .+..++...+.++|.+--+++..|++|++++.+.
T Consensus 108 ~~kviIide~d-~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll 152 (207)
T d1a5ta2 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPERLL 152 (207)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSC
T ss_pred ccceEEechhh-hhhhhhhHHHHHHHHhhcccceeeeeecChhhhh
Confidence 36899999974 3446667778888866555666788999976543
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.62 E-value=0.12 Score=53.69 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
..+.+||+||+||||.+-=|...+
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999865555443
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.55 E-value=0.079 Score=52.72 Aligned_cols=21 Identities=43% Similarity=0.727 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||..|+|||||++.+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998874
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=91.54 E-value=0.22 Score=51.42 Aligned_cols=26 Identities=31% Similarity=0.245 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
+..+.+||+||+||||.+.=|...+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34688999999999998877765554
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.50 E-value=0.039 Score=56.25 Aligned_cols=21 Identities=48% Similarity=0.597 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
.|||.|..||||||+++.|-.
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.43 E-value=0.039 Score=56.54 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=24.6
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
++++.++.|+||.||||||+.+.|.-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4577899999999999999999998754
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.42 E-value=0.04 Score=55.18 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||+.|+|||||++.|.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999998855
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.24 E-value=0.037 Score=56.60 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.2
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+.-+++|-|+.||||||+++.|...++
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999987663
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.23 E-value=0.05 Score=55.70 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=25.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCCccEEEEC
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID 1307 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ID 1307 (1496)
..|.|+|+.||||||+.+.|..-+ |-+.|+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 469999999999999999998876 556665
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.15 E-value=0.19 Score=52.16 Aligned_cols=45 Identities=24% Similarity=0.394 Sum_probs=30.4
Q ss_pred HccCCCEEEEecCCCC-CCHHHHHHHHHHHHHHH-hCCcEEEEEccCc
Q 039402 757 LYQDSDIYLFDDPFSA-VDAHTGSHLFQEVLLGL-LSSKTVIYVTHQV 802 (1496)
Q Consensus 757 l~~~~~illLDep~sa-LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~ 802 (1496)
.+.+.|++++||.=.- =++..+..+|. +++.. ..|+.+|+.+...
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~-lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESSC
T ss_pred HHhhccchhhhhhhhhcCchHHHHHHHH-HHHHHhhccceEEEecCCc
Confidence 3678999999998443 25666667775 45443 4677777776653
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.14 E-value=0.037 Score=59.39 Aligned_cols=25 Identities=40% Similarity=0.504 Sum_probs=22.7
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
..+.+.||+|||||||.++|++++.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3588999999999999999999885
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.12 E-value=0.018 Score=56.83 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.++++|++|+|||||+++|.|+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.11 E-value=0.049 Score=54.04 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||.+|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999997764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.06 E-value=0.049 Score=56.23 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
.|+|+|+.|+|||||++.|.+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999976
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.00 E-value=0.056 Score=62.08 Aligned_cols=25 Identities=44% Similarity=0.603 Sum_probs=22.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPK 672 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~ 672 (1496)
.++|+|++|+|||||+|+|.|.-..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~ 82 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNE 82 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4899999999999999999996543
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=91.00 E-value=0.055 Score=54.00 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcC
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
.-+++|+|..|||||||++.|.|.
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999884
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.97 E-value=0.051 Score=55.01 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999998864
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=90.94 E-value=0.087 Score=56.88 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=28.7
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 675 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G 675 (1496)
=++.|.++-|.||.|||||||...++...+...|
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~ 86 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG 86 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCC
Confidence 3689999999999999999999888887665433
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.81 E-value=0.086 Score=52.42 Aligned_cols=21 Identities=52% Similarity=0.635 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++++|..|+|||||++.+++
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998776
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.77 E-value=0.056 Score=54.33 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
+|.|+|+.||||||+.+.|.--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999996655
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.76 E-value=0.054 Score=55.41 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
-.+++|+||.||||||+.+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998766
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.74 E-value=0.1 Score=51.90 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||..|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 899999999999999997754
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.71 E-value=0.057 Score=54.28 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.4
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
++++|.|++||||||+.+.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678899999999999999987654
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.69 E-value=0.054 Score=57.13 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
.|||+|+.+||||||+++|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999874
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=90.65 E-value=0.053 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHhcCC
Q 039402 649 VAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 649 ~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
++|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999997655
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.57 E-value=0.099 Score=52.57 Aligned_cols=21 Identities=38% Similarity=0.751 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||+++|..|+|||||++.+..
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 899999999999999998765
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=90.56 E-value=0.053 Score=53.83 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCccEEEEC
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID 1307 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ID 1307 (1496)
.|.|+|++||||||+.+.|..-+ |--.+|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d 30 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD 30 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHHh----CCCEEe
Confidence 47899999999999999997765 444555
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.56 E-value=0.058 Score=54.11 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.|||+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999998765
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=90.55 E-value=0.06 Score=54.39 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
+|.|+|+.||||||+.+.|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998766
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.53 E-value=0.065 Score=52.97 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=26.1
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
.++|.++++.|+-|||||||.+.++..+-
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 46899999999999999999999987664
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.51 E-value=0.045 Score=56.81 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
.|||+|+-++|||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 5899999999999999999743
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=90.51 E-value=0.048 Score=55.53 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
+|.|.|+.||||||+.+.|..-+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999997665
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.48 E-value=0.058 Score=55.44 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+++++|.+||||||+.+.|...+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999986543
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=90.47 E-value=0.052 Score=55.22 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.+.|.||.||||||+.+.|.-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999987554
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.44 E-value=0.057 Score=53.63 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||+.|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998875
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.43 E-value=0.099 Score=52.05 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 599999999999999987764
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=90.41 E-value=0.072 Score=58.69 Aligned_cols=43 Identities=12% Similarity=0.275 Sum_probs=29.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS 694 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~ 694 (1496)
++||.|++||||||+.+.|...+....+ +-++..++++.+...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~----~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE----HRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT----CCCEEEEEGGGGBCC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcC----CCceEEEeeeeeECC
Confidence 7899999999999998888766543211 013556777766543
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.40 E-value=0.063 Score=53.32 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||.+|+|||||++.+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999998865
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.37 E-value=0.073 Score=55.83 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=24.2
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcC
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
+++|+++.|.||+|||||||..-++-.
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 799999999999999999999877643
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.35 E-value=0.061 Score=54.00 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.+.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999996654
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=90.25 E-value=0.063 Score=55.56 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 039402 1275 KTGIVGRTGSGKSTLIQTLF 1294 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~ 1294 (1496)
.|||.|..||||||+.+.|-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999774
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.20 E-value=0.061 Score=53.33 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||..|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998865
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.18 E-value=0.072 Score=55.40 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=24.4
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
++|.+++|.|+-||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999876543
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=90.11 E-value=0.056 Score=54.05 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.+.++|++||||||+.+.|+-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999997543
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=90.10 E-value=0.068 Score=52.92 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.++|+.|+|||||++.|..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 789999999999999998854
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.08 E-value=0.071 Score=53.91 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.|||.+|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 599999999999999998875
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.06 E-value=0.074 Score=55.06 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=23.8
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+|.+++|-|+-||||||+.+.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999876543
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.02 E-value=0.069 Score=54.33 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=18.9
Q ss_pred cEEEEEecCCCcHHHHHHHHh
Q 039402 647 MRVAVCGTVGSGKSSLLSCIL 667 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~il 667 (1496)
-++||+|++||||||+.+.|-
T Consensus 4 ~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999999874
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.01 E-value=0.071 Score=54.27 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=42.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHH
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWE 1354 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~ 1354 (1496)
+|.|+|+.||||||..+.|..-+ |-..|+-- +-+|.-+ -++...+.-.+.+.+.-....+|+.+.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~g-------~llR~~~---~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 68 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSAG-------ELLRDER---KNPDSQYGELIEKYIKEGKIVPVEITIS 68 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HCTTSTTHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEcHH-------HHHHHHH---HhhhhhHHHHHHHHHhcCCccccchhhH
Confidence 68999999999999999997654 43444321 1244321 1222333334555555555667777666
Q ss_pred HHHH
Q 039402 1355 ALDK 1358 (1496)
Q Consensus 1355 aL~~ 1358 (1496)
.+..
T Consensus 69 ~~~~ 72 (194)
T d1teva_ 69 LLKR 72 (194)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.95 E-value=0.12 Score=52.63 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.|||..|+|||||++.+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhh
Confidence 599999999999999998874
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.90 E-value=0.065 Score=55.25 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
.|+|+|+.|+|||||++.+.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.86 E-value=0.064 Score=54.72 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.|+|-|..||||||+++.|.+-.
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999998765
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.77 E-value=0.079 Score=52.73 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
||.+||.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 79999999999999999987643
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.75 E-value=0.075 Score=53.15 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.|||..|+|||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 699999999999999998764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=89.74 E-value=0.046 Score=60.95 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.7
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
.-.++|.|+.|||||||+..+...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999987654
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=89.69 E-value=0.075 Score=53.63 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.+.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998765
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=89.68 E-value=0.069 Score=53.31 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
+.|-++|++||||||+.+.|..-+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 446799999999999999997654
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.67 E-value=0.053 Score=57.15 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=24.2
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
++.+++|-|+-||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999988764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.65 E-value=0.11 Score=52.14 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=27.0
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
.+++-.+.+ .|.=|.|.|++|+||||+...|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456555556 888999999999999999988764
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.63 E-value=0.088 Score=52.50 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
+++++|+.|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4899999999999999998753
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=89.57 E-value=0.079 Score=52.90 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
.++++|+.|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.57 E-value=0.064 Score=58.39 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.|||-|.+|||||||...|...+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 68999999999999998875443
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.56 E-value=0.073 Score=53.00 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++++|+.|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 389999999999999998874
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.56 E-value=0.098 Score=51.81 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
+++++|+.|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988754
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=89.56 E-value=0.064 Score=55.63 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=22.4
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
++.+++++||+|+||||.+--|+-.+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577999999999999999877766554
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.54 E-value=0.077 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+++|+||.||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.54 E-value=0.063 Score=56.49 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
++..|+|-|..||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998774
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.54 E-value=0.081 Score=52.24 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||..|+|||||++.+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998864
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.53 E-value=0.074 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.1
Q ss_pred EEEEecCCCcHHHHHHHHhcCC
Q 039402 649 VAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 649 ~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
++++|+.||||||+.+.|.-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999997654
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.50 E-value=0.065 Score=54.78 Aligned_cols=117 Identities=16% Similarity=0.164 Sum_probs=67.2
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcH
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTD 1349 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd 1349 (1496)
++.+..|-|+|+.||||||+.+.|..-+ |-..|+--| -+|..+. ..+ ...-++.+.++.....+|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~~---~~~-~~~~~~~~~~~~~~~~~~ 69 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEVS---SGS-ARGKMLSEIMEKGQLVPL 69 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHHH---HTC-HHHHHHHHHHTTTCCCCH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEeccH-------HHHHHHH---HhH-hhhhhhHHHHhhccCCch
Confidence 3567789999999999999999998755 555554322 1333211 111 112245556666666777
Q ss_pred HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcC
Q 039402 1350 EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEA 1409 (1496)
Q Consensus 1350 ~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEa 1409 (1496)
+-+...+... +...+...+..+-+ .+..-..|--.+.+.+.....++.+|.+
T Consensus 70 ~~~~~~~~~~-----l~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 70 ETVLDMLRDA-----MVAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHHHH-----HHTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred heeeeehhhh-----hhhcccccccceee---eccchhHHHHHHHHHhCCccchhccccc
Confidence 7666655432 12222222222322 2455667777777776665566667654
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.49 E-value=0.15 Score=53.11 Aligned_cols=45 Identities=18% Similarity=0.328 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhc
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVI 1445 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~ 1445 (1496)
+.+++++||+-. +.......+...+.+.-..+..+++++..+.+.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~ 145 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKII 145 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred ceEEEEEecccc-cchhHHHHHhhhccccccceeeeeccCchhhhh
Confidence 468999999874 444555666677777667788888988886654
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.47 E-value=0.078 Score=53.30 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
+|.|+|+.||||||..+.|..-+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999997654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.45 E-value=0.082 Score=52.84 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||+.|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 599999999999999988765
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.34 E-value=0.085 Score=52.33 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.|||.+|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999998864
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=89.29 E-value=0.066 Score=53.77 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
.+.|.|..||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 355789999999999999987764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.27 E-value=0.088 Score=54.68 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.9
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
++|.++-+.|.+||||||+.+.|.-.+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 678899999999999999999987544
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.21 E-value=0.071 Score=52.96 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
+|.++|..||||||+.++|..-+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 47788999999999999997665
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.20 E-value=0.081 Score=52.21 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.|||..|+|||||++.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999999874
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.20 E-value=0.1 Score=54.24 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.4
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHh
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCIL 667 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~il 667 (1496)
+++|+++.|.|++|+|||+|..-++
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7999999999999999999985443
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.18 E-value=0.05 Score=59.20 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
.|||.|.|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 699999999999999999877664
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.16 E-value=0.082 Score=52.68 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.|||..|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999999875
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.15 E-value=0.11 Score=51.50 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+++++|..|+|||||++.+++.-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48899999999999999887643
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.14 E-value=0.065 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=19.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
-=||.+||++|+|||||++.+.+
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999998743
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.05 E-value=0.094 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.++|+||.||||||..+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997543
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.04 E-value=0.099 Score=52.29 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
+++|+|+.|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.00 E-value=0.09 Score=53.04 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.|||.+|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 899999999999999988764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.98 E-value=0.11 Score=51.78 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
||.+||..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 78999999999999999987654
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.91 E-value=0.084 Score=55.55 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
++||+|.+.+|||||+++|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999985
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.81 E-value=0.096 Score=51.86 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.|||..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999998864
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.78 E-value=0.11 Score=51.17 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=18.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++++|+.|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999987774
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=88.72 E-value=0.092 Score=51.91 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
.++++|+.|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999987653
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.70 E-value=0.072 Score=53.18 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||.+|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999987643
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.63 E-value=0.12 Score=54.12 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=23.9
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhc
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++|+++.|.|++|+|||+|..-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 79999999999999999999977764
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.58 E-value=0.11 Score=54.08 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=25.1
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVPK 672 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~~ 672 (1496)
+|.+++|-|+-||||||+.+.|.-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 7999999999999999999999876653
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.55 E-value=0.097 Score=52.31 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.|||..|+|||||++.+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999998764
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.53 E-value=0.1 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
+|+|-||.||||||+.+.|..-+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997644
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=88.51 E-value=0.1 Score=54.02 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 039402 1275 KTGIVGRTGSGKSTLIQTLF 1294 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~ 1294 (1496)
.|||+|..||||||..+.|-
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999874
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.46 E-value=0.13 Score=50.90 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999998764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.42 E-value=0.12 Score=51.03 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
+++++|..|+|||||++.+++.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.36 E-value=0.074 Score=53.20 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=9.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.|||..|+|||||++.|.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999997764
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.33 E-value=0.1 Score=54.10 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+++|-||+||||||..+.|+-.+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578889999999999999987663
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.28 E-value=0.11 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
+|.|.|+.||||||+.+.|..-+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999997665
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.28 E-value=0.1 Score=52.17 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
+++|+|+.|+|||||++.+++.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4889999999999999987754
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.27 E-value=0.1 Score=52.06 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999998864
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.27 E-value=0.1 Score=53.83 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=18.3
Q ss_pred EEEEEecCCCcHHHHHHHHh
Q 039402 648 RVAVCGTVGSGKSSLLSCIL 667 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~il 667 (1496)
++||+|+.||||||+.+.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999774
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.26 E-value=0.11 Score=54.75 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=24.0
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhc
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++|+++.|.|++|||||+|...++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999999987764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.23 E-value=0.1 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
-||.|||.+|+|||||++.+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3899999999999999988765
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.19 E-value=0.1 Score=52.61 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++|+|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998774
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=88.18 E-value=0.14 Score=56.70 Aligned_cols=25 Identities=40% Similarity=0.578 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.-+|||.|+-|||||||+..|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998753
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.15 E-value=0.18 Score=49.88 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++++|+.|+|||||++.+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998875
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.12 E-value=0.093 Score=55.66 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
.+.+.||+|+||||++++++.++.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999865
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.11 E-value=0.1 Score=57.72 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
+|||||..-+|||||+++|.|.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 7999999999999999999875
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.10 E-value=0.17 Score=50.88 Aligned_cols=28 Identities=29% Similarity=0.202 Sum_probs=23.2
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1268 CTFPGGEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1268 ~~I~~GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
+---.|.=|.|+|++|+||||++..|..
T Consensus 9 ~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 9 LVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3445678899999999999999988754
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.10 E-value=0.19 Score=49.90 Aligned_cols=21 Identities=43% Similarity=0.643 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||.+|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 789999999999999998864
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.06 E-value=0.12 Score=52.77 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHhcCC
Q 039402 649 VAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 649 ~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+||+|.+.+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999854
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.06 E-value=0.1 Score=57.18 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
+++|||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.03 E-value=0.11 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.+.|+||.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997544
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=88.01 E-value=0.12 Score=52.57 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+.-.++|+||.||||||+.+.|+-.+
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999998754
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.99 E-value=0.12 Score=51.32 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||..|+|||||++.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 789999999999999998873
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.94 E-value=0.11 Score=57.23 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHccCCC--EEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcc
Q 039402 1386 GQRQLVCLGRVLLKRSK--ILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439 (1496)
Q Consensus 1386 GQrQll~LARALLr~~~--ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAH 1439 (1496)
.+.+--.+++..++++. |++...++.....+....+.+.+... ..+|++++++
T Consensus 153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk 207 (306)
T d1jwyb_ 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITK 207 (306)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcC-CCeEEEEEec
Confidence 34455677788888886 66677777666555544444444322 3477777766
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=87.86 E-value=0.086 Score=55.53 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCc
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPKIS 674 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~~~ 674 (1496)
.+.+.||+|+||||+.++|+.++....
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~ 63 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNI 63 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCCc
Confidence 378999999999999999999876543
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=87.85 E-value=0.097 Score=54.45 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=21.0
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
++..++++|||+|+||||.+--|+-.+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999876666544
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.83 E-value=0.15 Score=50.18 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.79 E-value=0.12 Score=51.08 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.|||..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.72 E-value=0.16 Score=49.99 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHh-cCC
Q 039402 648 RVAVCGTVGSGKSSLLSCIL-GEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~il-G~~ 670 (1496)
+++++|..|+|||||++.+. |..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~ 27 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRF 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCC
Confidence 48899999999999999876 443
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.71 E-value=0.12 Score=51.92 Aligned_cols=23 Identities=22% Similarity=0.409 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.+.|+||.||||||+.+.|.-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.66 E-value=0.13 Score=50.93 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+++++|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 48999999999999999998764
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=87.66 E-value=0.12 Score=53.38 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+++|-||.||||||+.+.|.-.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999987653
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.64 E-value=0.14 Score=53.48 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=23.5
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHh
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLF 1294 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~ 1294 (1496)
=+++|+.+-|.|++|||||||+.-+.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999999997664
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.60 E-value=0.13 Score=51.14 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||+|||+.|+|||||++.+..
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999998754
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.59 E-value=0.15 Score=50.38 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
+++|+|..|+|||||++.+++.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999888754
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.58 E-value=0.13 Score=54.59 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.+..+.|.||.|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 46789999999999999999887654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.56 E-value=0.13 Score=51.55 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999998875
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.52 E-value=0.13 Score=51.89 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
+++|+|+.|+|||||++.+.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3899999999999999988853
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.50 E-value=0.15 Score=50.54 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++|+|+.|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998875
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.43 E-value=0.19 Score=54.44 Aligned_cols=35 Identities=43% Similarity=0.668 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcc-----------cCCCccEEEEC
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRI-----------VEPAAGQILID 1307 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl-----------~ep~~G~I~ID 1307 (1496)
+=||||||-.-+|||||+++|.+- .+|.-|.+.+.
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~ 47 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP 47 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecc
Confidence 348999999999999999999853 35566777654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.43 E-value=0.17 Score=50.41 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+++++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 589999999999999999987543
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=87.40 E-value=0.14 Score=52.37 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.|||+|...+|||||+++|.+..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEeccCCcHHHHHHHHHhhh
Confidence 48999999999999999998754
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.32 E-value=0.08 Score=55.56 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
.+.+.||+|+||||++++++.++.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Confidence 378999999999999999998763
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.23 E-value=2 Score=45.83 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.2
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcC
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
..+++|+|.-|.|||||.+.+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999998754
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.21 E-value=0.21 Score=50.06 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.++|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 789999999999999987754
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=87.21 E-value=0.12 Score=51.97 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
.++++|+.|+|||||++.+.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988653
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=87.10 E-value=0.14 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.|+|-||.||||||+.+.|..-+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999996544
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=87.08 E-value=0.19 Score=50.08 Aligned_cols=29 Identities=28% Similarity=0.218 Sum_probs=24.4
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1267 SCTFPGGEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1267 S~~I~~GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
++---.|.=|.|.|++|+||||+...|.+
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 45556788999999999999999977754
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=87.00 E-value=0.16 Score=50.10 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=27.3
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCC
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP 1299 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep 1299 (1496)
..+||..|.+.|.=||||||+++.+.+-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 3578999999999999999999999987743
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=87.00 E-value=0.12 Score=56.04 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=28.1
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1268 CTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1268 ~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
+.|-.|||++|+|..|+|||||+..+.+-..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 6788999999999999999999999988553
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.99 E-value=0.15 Score=52.87 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
++|-.|+|-|.-||||||+++.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999977554
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=86.95 E-value=0.24 Score=49.04 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.89 E-value=0.15 Score=55.94 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.++|||.-+||||||+++|+|+-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999975
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=86.82 E-value=0.16 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.-+|.|+|+.||||||+.+.|..-+
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHH
Confidence 3488999999999999999998755
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.72 E-value=0.18 Score=50.47 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
+++++|..|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988763
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.69 E-value=0.24 Score=49.05 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998875
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.68 E-value=0.19 Score=50.20 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
+++|+|..|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999887754
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=86.66 E-value=0.095 Score=54.40 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
-.+++++||+|+||||.+--|+-.+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999998877775554
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.61 E-value=0.18 Score=52.34 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.9
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHH
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTL 1293 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L 1293 (1496)
+++|+.+-|.|++|+|||+|+.-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 899999999999999999998543
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=86.59 E-value=0.13 Score=54.97 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=25.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1308 (1496)
-|-++||+|+|||||+++|.+-+. .+-+.|++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh--cceEEEec
Confidence 377899999999999999999764 33455554
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=86.55 E-value=0.23 Score=53.34 Aligned_cols=42 Identities=26% Similarity=0.344 Sum_probs=33.5
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCcc-EEEECCee
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG-QILIDGID 1310 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G-~I~IDG~d 1310 (1496)
=|++|..+-|.|++|||||||...+..-..-..| -++||...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence 5789999999999999999999877766543334 47888764
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.51 E-value=0.17 Score=50.89 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCccEEEEC
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID 1307 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ID 1307 (1496)
+|-|+|+.||||||+.+.|.--+ |-+.|+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~ 32 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLA 32 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEe
Confidence 68899999999999999997655 445554
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.43 E-value=0.14 Score=56.40 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1308 (1496)
.-+.++||||+|||+|+++|.+.... --+.+|+
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~ 82 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLANA--PFIKVEA 82 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEG
T ss_pred ceEEEECCCCCCHHHHHHHHhhcccc--chhcccc
Confidence 45679999999999999999997532 2455554
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=86.40 E-value=0.15 Score=55.91 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcc
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
+-|+||||..-+|||||+++|.+-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999999975
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.39 E-value=0.17 Score=55.31 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.++|||.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=86.25 E-value=0.29 Score=49.02 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=25.8
Q ss_pred ceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhc
Q 039402 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 635 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG 668 (1496)
.++..-+.+ .|.=+.|+|++|+|||||...+..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 355555555 688899999999999999977753
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.22 E-value=0.17 Score=50.02 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||..|+|||||++.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999998764
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.20 E-value=0.18 Score=51.96 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
-++|+|.+.+|||||+..|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 389999999999999999999665
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=86.17 E-value=0.1 Score=55.02 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.9
Q ss_pred EEEEecCCCcHHHHHHHHhcCCC
Q 039402 649 VAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 649 ~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+.+.||.|+||||+.+++++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999998764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.17 E-value=0.16 Score=50.63 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=18.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++|+|+.|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999987764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.08 E-value=0.17 Score=50.37 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999998764
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=86.07 E-value=0.19 Score=52.53 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.8
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
+++|+.+-|.|++|+||||+..-+.-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999877753
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.05 E-value=0.17 Score=50.43 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++|+|..|+|||||++.+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988765
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.05 E-value=0.16 Score=50.17 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++|+|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988874
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.04 E-value=0.21 Score=49.34 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 479999999999999998775
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.03 E-value=0.21 Score=50.77 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=18.6
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 039402 649 VAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 649 ~~ivG~~GsGKSTLl~~ilG 668 (1496)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 89999999999999998775
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.95 E-value=0.2 Score=49.50 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999977643
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=85.95 E-value=0.083 Score=57.41 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=24.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCc
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 691 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~ 691 (1496)
++||.|++||||||+.+.|.-.+... | -+.+.++|+.+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~-----v~~~iI~~Dsf 43 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G-----VKAVSIEGDAF 43 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T-----CCEEEEEGGGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhc-C-----CCeEEEeCCCC
Confidence 79999999999999999886655422 1 13456777664
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=85.91 E-value=0.15 Score=50.70 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
.++++|+.|+|||||++.+.+...
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999999999999999986543
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.90 E-value=0.39 Score=49.10 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=70.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC-CCcHHH
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE-ESTDEQ 1351 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~e 1351 (1496)
+..+-+.|+.|+||+|++..|.+.++-..- +.|-++ .+.|-+ ...-++
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~-------------------------~h~D~~------~i~~~~~~I~Id~ 63 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPEYVEKFPP-------------------------KASDVL------EIDPEGENIGIDD 63 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCC-------------------------CTTTEE------EECCSSSCBCHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHhcccc-------------------------CCCCEE------EEeCCcCCCCHHH
Confidence 457789999999999999999986532100 011110 112211 234567
Q ss_pred HHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCC
Q 039402 1352 IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSD 1431 (1496)
Q Consensus 1352 I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~ 1431 (1496)
|.+..+.+... |. ..+.||+|+|||= .+..+....+.++|.+--++
T Consensus 64 IR~i~~~~~~~------~~---------------------------~~~~KviIId~ad-~l~~~aqNaLLK~LEEPp~~ 109 (198)
T d2gnoa2 64 IRTIKDFLNYS------PE---------------------------LYTRKYVIVHDCE-RMTQQAANAFLKALEEPPEY 109 (198)
T ss_dssp HHHHHHHHTSC------CS---------------------------SSSSEEEEETTGG-GBCHHHHHHTHHHHHSCCTT
T ss_pred HHHHHHHHhhC------cc---------------------------cCCCEEEEEeCcc-ccchhhhhHHHHHHhCCCCC
Confidence 77666555432 10 1135899999975 57788888999999876667
Q ss_pred cEEEEEccCcchhc
Q 039402 1432 CTVLTIAHRITSVI 1445 (1496)
Q Consensus 1432 ~TVI~IAHRl~ti~ 1445 (1496)
+..|.+|++.+.+.
T Consensus 110 t~fiLit~~~~~ll 123 (198)
T d2gnoa2 110 AVIVLNTRRWHYLL 123 (198)
T ss_dssp EEEEEEESCGGGSC
T ss_pred ceeeeccCChhhCH
Confidence 88889999976554
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.89 E-value=0.13 Score=51.22 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=18.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
+++++|+.|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999987653
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.89 E-value=0.16 Score=50.98 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
+++|+|..|+|||||++.+++.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999887753
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.85 E-value=0.17 Score=51.71 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999986553
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.83 E-value=0.24 Score=49.74 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=25.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCccEE
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I 1304 (1496)
||.+||..|+|||||++-+..-.-|+.|-.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 789999999999999998876667777743
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.80 E-value=0.21 Score=49.45 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++++|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 579999999999999998884
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=85.66 E-value=0.18 Score=52.14 Aligned_cols=20 Identities=40% Similarity=0.624 Sum_probs=18.5
Q ss_pred EEEEEecCCCcHHHHHHHHh
Q 039402 648 RVAVCGTVGSGKSSLLSCIL 667 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~il 667 (1496)
++||+|..||||||..+.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999874
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.61 E-value=0.27 Score=52.82 Aligned_cols=75 Identities=25% Similarity=0.299 Sum_probs=49.2
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccE-EEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCC
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ-ILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEES 1347 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~-I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~ 1347 (1496)
=++.|..+-|.|++|+|||||+.-+.....-..|. |+||... .++.+.++ ++|+=+ +|+-.....
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~-~~GvD~-----------d~il~~~~~ 121 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAK-KLGVDT-----------DSLLVSQPD 121 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHH-HHTCCG-----------GGCEEECCS
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHHH-HhCCCH-----------HHeEEecCC
Confidence 57899999999999999999987777665545555 7788765 34444443 345422 233333334
Q ss_pred cHHHHHHHHH
Q 039402 1348 TDEQIWEALD 1357 (1496)
Q Consensus 1348 sd~eI~~aL~ 1357 (1496)
+-||+.+.++
T Consensus 122 ~~E~~~~~~~ 131 (269)
T d1mo6a1 122 TGEQALEIAD 131 (269)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5666666554
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.60 E-value=0.3 Score=48.95 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=18.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++++|..|+|||||++.++.
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999976654
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.58 E-value=0.11 Score=54.30 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEecCCCcHHHHHHHHhcCC
Q 039402 649 VAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 649 ~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+.+.||+|+||||++++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999875
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.58 E-value=0.18 Score=50.78 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.|||..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 799999999999999988753
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.57 E-value=0.18 Score=54.50 Aligned_cols=175 Identities=15% Similarity=0.219 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc---ccCCCccEEEECCeeCCCCChHHHhcccEEEcccc-cccccchhhcc-C-CCC-CC
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR---IVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDP-VMFEGTVRSNL-D-PLE-ES 1347 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r---l~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~gTIR~NL-d-p~~-~~ 1347 (1496)
.|||||..|||||||+.+|+- ..+ ..|++. ||..+.+...++..+++++-+.-- +-+++. +-|+ | |.. ++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~-~~n~iDtPG~~dF 84 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDH-RINIIDAPGHVDF 84 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCCCCSEEEEEETTE-EEEEECCCSSSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc-ccccee-cCceEEeccHHHHhcCCccccceeeeccCCe-EEEEecCCchhhh
Confidence 489999999999999999953 332 234442 444455556666666676644322 223332 3354 4 543 34
Q ss_pred cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEE---EEcCCCCCCHHHHHHHHHH
Q 039402 1348 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILM---LDEATASVDTATDNLIQQT 1424 (1496)
Q Consensus 1348 sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILi---LDEaTsslD~~Td~~Iq~~ 1424 (1496)
. .|...+|..+...=.|-+-.+| .-.+-++..-.|+. .+-|+|++ ||-+=+.. ..+.+.
T Consensus 85 ~-~e~~~~l~~~D~avlVvda~~G-----------v~~~T~~~w~~a~~-~~lP~i~fINKmDr~~ad~-----~~~l~e 146 (276)
T d2bv3a2 85 T-IEVERSMRVLDGAIVVFDSSQG-----------VEPQSETVWRQAEK-YKVPRIAFANKMDKTGADL-----WLVIRT 146 (276)
T ss_dssp S-TTHHHHHHHCCEEEEEEETTTS-----------SCHHHHHHHHHHHT-TTCCEEEEEECTTSTTCCH-----HHHHHH
T ss_pred H-HHHHHHHHhhhheEEeccccCC-----------cchhHHHHHHHHHH-cCCCEEEEEeccccccccc-----chhHHH
Confidence 3 3456677666532222111122 23344555555553 24577776 45544433 234555
Q ss_pred HHHhcCC-cEEEEEc----cCcchhcc--cCEEEEEeC---CeEeEecChhhHhhc
Q 039402 1425 LRQHFSD-CTVLTIA----HRITSVID--SDLVLLLNH---GLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1425 I~~~f~~-~TVI~IA----HRl~ti~~--~DrIlVL~~---G~IvE~g~p~~Ll~~ 1470 (1496)
|++.+.. +..+.+= -...-+.| ..+.+.-++ ++..+..-|+++.+.
T Consensus 147 i~~~l~~~~vp~~~Pig~~~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~~~ 202 (276)
T d2bv3a2 147 MQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQ 202 (276)
T ss_dssp HHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGHHH
T ss_pred HHHHhCCCeEEEEecccCCCceeEEeeccceEEEEecCCCCccceeccCchHHHHH
Confidence 6666643 3333221 11111222 234444433 356666667776653
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.35 E-value=0.11 Score=57.24 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=21.4
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
.-+.++||+|+|||+|.++|+.++.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHhhccc
Confidence 3456899999999999999998753
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=85.27 E-value=0.15 Score=50.66 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.+||+.|+|||||++.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999998764
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.25 E-value=0.21 Score=52.45 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=24.4
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
=|++|+.+-|.|++||||||+..-+..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999999987764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=85.21 E-value=0.21 Score=51.45 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
+|..|.|-|.-||||||+++.|...++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987654
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=85.17 E-value=0.19 Score=55.72 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.-.++|.|+.|+|||||+..+...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999987643
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=85.12 E-value=0.21 Score=51.64 Aligned_cols=26 Identities=19% Similarity=0.073 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+.+++++||+|+||||.+--|+-.+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999877775554
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.07 E-value=0.18 Score=54.63 Aligned_cols=24 Identities=33% Similarity=0.301 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
-.|+|+|+.++|||||++.|++..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 478999999999999999999854
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=84.95 E-value=0.19 Score=53.21 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=24.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCCCCcc
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVPKISG 675 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~~~~G 675 (1496)
..+.|.||.|+||||+++.++..++...+
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 47899999999999999999988765443
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.93 E-value=0.22 Score=52.26 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.5
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHH
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTL 1293 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L 1293 (1496)
=+++|+.+-|.|++||||||+..-+
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHH
Confidence 3899999999999999999998754
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.84 E-value=0.14 Score=51.14 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=9.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++++|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999987775
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.55 E-value=0.21 Score=54.09 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
++||.|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877544
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.43 E-value=0.21 Score=50.55 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
||.++|..|+|||||++.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999987753
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=84.27 E-value=0.21 Score=51.75 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=17.5
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+..++++|||+|+||||.+--|+-.+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999998877765544
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.24 E-value=0.24 Score=50.16 Aligned_cols=27 Identities=41% Similarity=0.704 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc---cCCCcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI---VEPAAG 1302 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl---~ep~~G 1302 (1496)
||.++|.+|+|||||++-+ ++ +.||-|
T Consensus 4 KivllG~~~vGKTsll~r~-~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM-RIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH-HHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHH-hcCCCCCCeee
Confidence 8999999999999999988 33 347878
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.17 E-value=0.22 Score=49.25 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.5
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++|+|+.|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.14 E-value=0.22 Score=49.07 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
++++||..|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999987643
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=84.13 E-value=0.18 Score=53.75 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=21.2
Q ss_pred EEEEecCCCcHHHHHHHHhcCCC
Q 039402 649 VAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 649 ~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+.+.||.|+|||+|.++|..++.
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEecCCCCChhHHHHHHHHHcC
Confidence 78999999999999999998764
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.10 E-value=0.38 Score=50.00 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHh-cccCCCcc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLF-RIVEPAAG 1302 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~-rl~ep~~G 1302 (1496)
-||.++|.+|+|||||++-+. +-..||-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 489999999999999998763 33456766
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=84.07 E-value=0.23 Score=52.59 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.+..+.|.|+.|+|||||++.+++-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 45789999999999999999876643
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=83.95 E-value=0.34 Score=51.20 Aligned_cols=29 Identities=21% Similarity=0.570 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCCcc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPAAG 1302 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G 1302 (1496)
..+-|.|++|+||||+++.|.+.+....+
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 47889999999999999999998864433
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.91 E-value=0.23 Score=51.68 Aligned_cols=29 Identities=31% Similarity=0.397 Sum_probs=24.1
Q ss_pred cEEEEEecCCCcHHHHHHHH-hcCCCCCcc
Q 039402 647 MRVAVCGTVGSGKSSLLSCI-LGEVPKISG 675 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~i-lG~~~~~~G 675 (1496)
-++.++|..|+|||||++-+ .+...|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 36899999999999999765 566777777
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=83.89 E-value=0.18 Score=53.70 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
-+.+.||.|||||++.++|+.+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHhhccc
Confidence 478999999999999999998753
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.87 E-value=0.21 Score=51.43 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=18.8
Q ss_pred EEEEecCCCcHHHHHHHHhc
Q 039402 649 VAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 649 ~~ivG~~GsGKSTLl~~ilG 668 (1496)
++|+|.+++|||||+..|++
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999975
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=83.72 E-value=0.28 Score=53.10 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=27.4
Q ss_pred eEEEeCCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 640 ~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
=+.|-+|+..+|+|+.|+|||||+..|..-.
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999887644
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.44 E-value=0.25 Score=49.41 Aligned_cols=22 Identities=45% Similarity=0.584 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
.++++|..|+|||||++.+++.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999987764
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.26 E-value=0.28 Score=49.30 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999988764
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=83.18 E-value=0.27 Score=51.58 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
..|||.|.-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999854
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.11 E-value=0.29 Score=50.74 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
+|..|+|-|.-||||||++++|...++
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 688999999999999999999987665
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.02 E-value=0.28 Score=52.96 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.8
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCC
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.+|+|+||-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999999864
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.33 E-value=0.38 Score=48.56 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
+++++|..|+|||||++.+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999877643
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=81.92 E-value=0.5 Score=47.25 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.1
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhc
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG 668 (1496)
-.|.=+.|+|++|+|||||...+..
T Consensus 12 ~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 12 IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3577899999999999999877663
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.89 E-value=0.33 Score=49.50 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
.|+|-|.-||||||+++.|..-++
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999987654
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=81.82 E-value=0.17 Score=47.72 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=20.5
Q ss_pred eeCCcEEEEEcCCCCCHHHHH-HHHhcc
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLI-QTLFRI 1296 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl-~~L~rl 1296 (1496)
+++|+.+-|+++||||||..+ .++...
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~ 31 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAE 31 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHH
Confidence 467999999999999999555 344433
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.56 E-value=0.21 Score=51.95 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.3
Q ss_pred EEEEecCCCcHHHHHHHHhcCCC
Q 039402 649 VAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 649 ~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+.+.||.|+||||+.++++.++.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 67999999999999999987654
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.56 E-value=0.21 Score=51.88 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=20.2
Q ss_pred EEEEecCCCcHHHHHHHHhcCC
Q 039402 649 VAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 649 ~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+.+.||.|+||||++++++.++
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999999865
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.33 E-value=0.32 Score=50.62 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhccc
Q 039402 1276 TGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1276 vgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
+-+.||+|+||||+++++.+-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999854
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.32 E-value=0.38 Score=51.60 Aligned_cols=30 Identities=33% Similarity=0.592 Sum_probs=26.5
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 039402 1267 SCTFPGGEKTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1267 S~~I~~GekvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
=+.+-.|||++|.|..|+|||||+.-+.+-
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 368889999999999999999998877654
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=81.11 E-value=0.31 Score=56.25 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=28.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL 1313 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~ 1313 (1496)
-|-+|||||+|||-|++.|.+++..- -+.+|+...+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fTe 87 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFTE 87 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceeee
Confidence 57799999999999999999988643 45666655544
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=80.98 E-value=0.59 Score=46.38 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=21.6
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhc
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG 668 (1496)
.-.|.=+.|+|++|+|||||.-.++.
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 34578899999999999999876653
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.98 E-value=0.31 Score=52.03 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=21.2
Q ss_pred EEEEecCCCcHHHHHHHHhcCCC
Q 039402 649 VAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 649 ~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+.+.||.|+|||+|.++++.+..
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEecCCCCCchHHHHHHHHHhC
Confidence 78999999999999999999764
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| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.77 E-value=0.39 Score=47.98 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=24.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCccE
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPKISGT 676 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~~~G~ 676 (1496)
+++++|..|+|||||++-+.....|+.|.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccE
Confidence 58999999999999999887655666664
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| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.45 E-value=0.39 Score=50.23 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
++++|=|.-||||||+++.|.-.++
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4899999999999999999987664
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| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.42 E-value=0.4 Score=50.40 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcccC
Q 039402 1276 TGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1276 vgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
+-+.||+|+||||++++|++-+.
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999998754
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| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.23 E-value=0.39 Score=48.39 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=22.3
Q ss_pred EEEEEecCCCcHHHHHHHHh--cCCCCCcc
Q 039402 648 RVAVCGTVGSGKSSLLSCIL--GEVPKISG 675 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~il--G~~~~~~G 675 (1496)
++.++|..|+|||||++-+- -...|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 58999999999999998872 23456767
|