Citrus Sinensis ID: 039403
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 249 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FJB5 | 901 | Disease resistance RPP8-l | yes | no | 0.759 | 0.209 | 0.287 | 7e-19 | |
| Q8W4J9 | 908 | Disease resistance protei | no | no | 0.863 | 0.236 | 0.271 | 1e-18 | |
| Q9FJK8 | 908 | Probable disease resistan | no | no | 0.755 | 0.207 | 0.299 | 6e-18 | |
| P0C8S1 | 906 | Probable disease resistan | no | no | 0.871 | 0.239 | 0.281 | 2e-16 | |
| P59584 | 910 | Disease resistance protei | no | no | 0.815 | 0.223 | 0.257 | 8e-16 | |
| Q8W474 | 907 | Probable disease resistan | no | no | 0.686 | 0.188 | 0.329 | 2e-15 | |
| Q9XIF0 | 906 | Putative disease resistan | no | no | 0.477 | 0.131 | 0.366 | 2e-15 | |
| P0DI18 | 1049 | Probable disease resistan | no | no | 0.393 | 0.093 | 0.393 | 1e-14 | |
| P0DI17 | 1049 | Probable disease resistan | no | no | 0.393 | 0.093 | 0.393 | 1e-14 | |
| Q8W3K3 | 910 | Putative disease resistan | no | no | 0.538 | 0.147 | 0.321 | 9e-14 |
| >sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 94.4 bits (233), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 110/219 (50%), Gaps = 30/219 (13%)
Query: 53 SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESK------LSRMV 106
S D+L R+ ++ +S + C +S SL + KLE L + K + V
Sbjct: 677 SSVTDLL-RMTKLRFFGVSFSERCTFENLSSSLRQFRKLETLSFIYSRKTYMVDYVGEFV 735
Query: 107 LS------------------EYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRN 148
L ++Q PP + + L + EDPMP+LE+L L+ ++L+R
Sbjct: 736 LDFIHLKKLSLGVHLSKIPDQHQLPPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRK 795
Query: 149 SYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEEL 208
+++GR++ C+ GGFP+L+ L + L+EW + G++P L LI++ C L +LP+ L
Sbjct: 796 AFIGRRMVCS-KGGFPQLRALQISEQSELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGL 854
Query: 209 WCIKSLRKLDLHWPQTELRQRLRTFEDMEWRYDIQLYPS 247
+ SL++L + + E +++L ED Y +Q P
Sbjct: 855 KYVTSLKELKIEGMKREWKEKL-VGEDY---YKVQHIPD 889
|
Disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 119/243 (48%), Gaps = 28/243 (11%)
Query: 15 MMQKLMHLNFGCITLPAPPKNYF--SSLKNLIFISALHPSSCTPDILGRLPSVQTLRISG 72
++++++ L + + L K L NL ++ + L R+ ++ L +S
Sbjct: 644 VLKEMIQLRYLSLPLKMDDKTKLELGDLVNLEYLYGFSTQHSSVTDLLRMTKLRYLAVSL 703
Query: 73 NLSCYHSGVSKSLCELHKLECLKLV-----------NESKLSRMVL-------------- 107
+ C +S SL EL LE L + E L +
Sbjct: 704 SERCNFETLSSSLRELRNLETLNFLFSLETYMVDYMGEFVLDHFIHLKQLGLAVRMSKIP 763
Query: 108 SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELK 167
++QFPP L+ L L + EDPMP+LE+L L+ ++L R ++LG ++ C+ GGFP+L
Sbjct: 764 DQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVCS-KGGFPQLC 822
Query: 168 VLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQTELR 227
V+ + L+EW + G++P L +L ++ C L++LP+ L I SL++L + + E +
Sbjct: 823 VIEISKESELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKREWK 882
Query: 228 QRL 230
++L
Sbjct: 883 EKL 885
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 112/217 (51%), Gaps = 29/217 (13%)
Query: 39 SLKNLIFISALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECL---- 94
+L+ L + S H S D+L R+ ++ L +S + C +S SL EL LE L
Sbjct: 673 NLEYLWYFSTQH--SSVTDLL-RMTKLRNLGVSLSERCNFETLSSSLRELRNLEMLNVLF 729
Query: 95 --KLVNESKLSRMVLS-------------------EYQFPPSLIQLSLSNTELMEDPMPM 133
++V + VL ++QFPP L + L + + EDPMP+
Sbjct: 730 SPEIVMVDHMGEFVLDHFIHLKQLGLAVRMSKIPDQHQFPPHLAHIHLVHCVMKEDPMPI 789
Query: 134 LERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESL 193
LE+L L+ + L +++GR++ C+ GGFP+L L + L+EW + G++P L +L
Sbjct: 790 LEKLLHLKSVALSYGAFIGRRVVCS-KGGFPQLCALGISGESELEEWIVEEGSMPCLRTL 848
Query: 194 IVNPCAYLRKLPEELWCIKSLRKLDLHWPQTELRQRL 230
++ C L++LP+ L I SL++L + + E +++L
Sbjct: 849 TIHDCEKLKELPDGLKYITSLKELKIREMKREWKEKL 885
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 113/245 (46%), Gaps = 28/245 (11%)
Query: 28 TLPAPPKNYFSSLKNLIFISALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCE 87
++PA K L NL ++ + L R+ + L + + C + SL E
Sbjct: 657 SMPAKTKLELGDLVNLESLTNFSTKHGSVTDLLRMTKLSVLNVIFSGECTFETLLLSLRE 716
Query: 88 LHKLECLKLVNESKLS-----------------RMVLS--------EYQFPPSLIQLSLS 122
L LE L + K+S + LS +Y+FPP L + L
Sbjct: 717 LRNLETLSFHDFQKVSVANHGGELLVLDFIHLKDLTLSMHLPRFPDQYRFPPHLAHIWLI 776
Query: 123 NTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM 182
+ EDPMP+LE+L L+ + L ++LGR++ C+ GGFP+L L + L EW +
Sbjct: 777 GCRMEEDPMPILEKLLHLKSVYLSSGAFLGRRMVCS-KGGFPQLLALKMSYKKELVEWRV 835
Query: 183 GAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQTELRQRLRTFEDMEWRYDI 242
G++P L +L ++ C L++LP+ L + L++L + + E +RL E Y +
Sbjct: 836 EEGSMPCLRTLTIDNCKKLKQLPDGLKYVTCLKELKIERMKREWTERLVI--GGEDYYKV 893
Query: 243 QLYPS 247
Q PS
Sbjct: 894 QHIPS 898
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1 | Back alignment and function description |
|---|
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 110/229 (48%), Gaps = 26/229 (11%)
Query: 27 ITLPAPPKNYFSSLKNLIFISALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLC 86
+ + K L NL ++ + L R+ ++ L +S + +S SL
Sbjct: 660 VKMDDKTKLELGDLVNLEYLYGFSTQHTSVTDLLRMTKLRNLTVSLSERYNFKTLSSSLR 719
Query: 87 ELHKLECLKLVNESK------LSRMVLS-------------------EYQFPPSLIQLSL 121
EL LE L ++ K + VL ++QFPP L+ + L
Sbjct: 720 ELRNLETLYVLFSRKTYMVDHMGEFVLDHFIHLKELGLVVRMSKIPDQHQFPPHLVHIFL 779
Query: 122 SNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWT 181
+ EDPMP+LE+L L+ ++L+ +++GR++ C+ GF +L L + L++W
Sbjct: 780 FYCGMEEDPMPILEKLHHLKSVQLRYKAFVGRRMVCS-KDGFTQLCALDISKQSELEDWI 838
Query: 182 MGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQTELRQRL 230
+ G++P L +L ++ C L++LP+ L I SL++L + + E +++L
Sbjct: 839 VEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIEGMKREWKEKL 887
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 23/194 (11%)
Query: 40 LKNLIFISALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNE 99
L+ L++ S H SS D+ G + + TL I +S S+ L LE L +V
Sbjct: 681 LETLVYFSTWHSSS--KDLCG-MTRLMTLAIRLTRVTSTETLSASISGLRNLEYLYIVGT 737
Query: 100 SK--------------LSRMVLSEY-----QFPPSLIQLSLSNTELMEDPMPMLERLPRL 140
L ++L Y FP L + LS L EDPMP+LE+L L
Sbjct: 738 HSKKMREEGIVLDFIHLKHLLLDLYMPRQQHFPSRLTFVKLSECGLEEDPMPILEKLLHL 797
Query: 141 QVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAY 200
+ + L + SY GR++ C+G GGFP+LK L + + +EW + G++P LE+L + C
Sbjct: 798 KGVILLKGSYCGRRMVCSG-GGFPQLKKLEIVGLNKWEEWLVEEGSMPLLETLSILDCEE 856
Query: 201 LRKLPEELWCIKSL 214
L+++P+ L I SL
Sbjct: 857 LKEIPDGLRFIYSL 870
|
Possible disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Query: 111 QFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLH 170
FP L +SL L EDPMP LE+L +L+V+ L N+Y+GR++ C G GGFP L L
Sbjct: 750 HFPSHLTTISLVYCFLEEDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTG-GGFPPLHRLE 808
Query: 171 LKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQTELRQRL 230
+ + L+EW + G++P L +L + C L+++P+ L I SL++L + + ++++
Sbjct: 809 IWGLDALEEWIVEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAIRTNEKVFQKKV 868
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 109 EYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKV 168
E FP L L L + L EDPMP+LE+L +L+ L+L+R S+ G+++ C+ SGGFP+L+
Sbjct: 772 EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCS-SGGFPQLQK 830
Query: 169 LHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEE 207
L +K + ++W + ++P L +L + C L++LP+E
Sbjct: 831 LSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDE 869
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 109 EYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKV 168
E FP L L L + L EDPMP+LE+L +L+ L+L+R S+ G+++ C+ SGGFP+L+
Sbjct: 772 EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCS-SGGFPQLQK 830
Query: 169 LHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEE 207
L +K + ++W + ++P L +L + C L++LP+E
Sbjct: 831 LSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDE 869
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 78/140 (55%), Gaps = 6/140 (4%)
Query: 108 SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELK 167
E FP L +SL L+EDP+P+LE+L L+ ++L ++ G+++ + GGFP+L
Sbjct: 769 DEQHFPSHLTSISLDGCCLVEDPLPILEKLLELKEVRLDFRAFCGKRMV-SSDGGFPQLH 827
Query: 168 VLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQTELR 227
L++ + +EW + G++P+L +L + C L++LP+ L I S++ LD+ E+
Sbjct: 828 RLYIWGLAEWEEWIVEEGSMPRLHTLTIWNCQKLKQLPDGLRFIYSIKDLDMDKKWKEIL 887
Query: 228 QRLRTFEDMEWRYDIQLYPS 247
E E Y +Q PS
Sbjct: 888 S-----EGGEEYYKVQHIPS 902
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 249 | ||||||
| 359496848 | 856 | PREDICTED: disease resistance RPP8-like | 0.959 | 0.279 | 0.293 | 3e-20 | |
| 147766035 | 902 | hypothetical protein VITISV_038742 [Viti | 0.959 | 0.264 | 0.286 | 5e-19 | |
| 296081343 | 1312 | unnamed protein product [Vitis vinifera] | 0.783 | 0.148 | 0.350 | 1e-18 | |
| 359495931 | 1359 | PREDICTED: probable disease resistance p | 0.783 | 0.143 | 0.350 | 1e-18 | |
| 147795782 | 1450 | hypothetical protein VITISV_023621 [Viti | 0.791 | 0.135 | 0.340 | 3e-18 | |
| 359491404 | 922 | PREDICTED: probable disease resistance R | 0.955 | 0.258 | 0.301 | 1e-17 | |
| 32453357 | 506 | resistance protein RPP8-like protein [Ar | 0.755 | 0.371 | 0.303 | 1e-17 | |
| 32453355 | 502 | resistance protein RPP8-like protein [Ar | 0.775 | 0.384 | 0.288 | 2e-17 | |
| 255566504 | 857 | Disease resistance protein RPP8, putativ | 0.726 | 0.211 | 0.346 | 2e-17 | |
| 356567194 | 750 | PREDICTED: disease resistance protein RP | 0.851 | 0.282 | 0.324 | 3e-17 |
| >gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 138/269 (51%), Gaps = 30/269 (11%)
Query: 3 SSYIDQSPEDIWMMQKLMHLNFGCITLPAPPKNYFS--SLKNLIFISALHPSSCTPDILG 60
++ + + P +W M L HL ++ P + S L+ L +S ++ + PD+LG
Sbjct: 590 ATKVSRLPIQLWNMPGLRHLYLEKTSIAGHPPVHVSVMHLQTLSTVS-IYGNQWIPDLLG 648
Query: 61 RLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKL--------------VNESKLSRMV 106
+L +++ L I G + +S+ L +L L+ L+L +N+ + ++
Sbjct: 649 KLTNLRKLGIHGYFASQTEALSRCLVKLSNLQNLQLRGTELILEPTIKLLLNQPNIHKLH 708
Query: 107 LSE--------YQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACA 158
LS + P+L ++ L N+ L++D +L +LP LQ+LKL NS+ G+++ C+
Sbjct: 709 LSGPIEKLPDPQEIQPNLTKIILENSLLVQDIFVILGKLPNLQMLKLLINSFFGKEITCS 768
Query: 159 GSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLD 218
SG FP+L L L + L+EW + GA+P L LI++ C L+K+PE + +LR+L
Sbjct: 769 ASG-FPKLHGLELSELVNLEEWRVDDGAMPSLRHLIIDHCDQLKKIPEGFQYLTALRELF 827
Query: 219 LHWPQTELRQRLRTFEDMEWRYDIQLYPS 247
L E R++ +W Y IQ PS
Sbjct: 828 LLNMPDEFEARIKG---DDW-YKIQHIPS 852
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 137/269 (50%), Gaps = 30/269 (11%)
Query: 3 SSYIDQSPEDIWMMQKLMHLNFGCITLPAPPKNYFS--SLKNLIFISALHPSSCTPDILG 60
++ + + P +W M L HL ++ P + S L+ L +S ++ + PD+LG
Sbjct: 636 ATKVSRLPIQLWNMPGLRHLYLEKTSIAGHPPVHVSVMHLQTLSTVS-IYGNQWIPDLLG 694
Query: 61 RLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKL--------------VNESKLSRMV 106
+L +++ L I G + +S+ L +L L+ L+L +N+ + ++
Sbjct: 695 KLTNLRKLGIHGYFASQTEALSRCLVKLSNLQNLQLRGTELILEPTIKLLLNQPNIHKLH 754
Query: 107 LSE--------YQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACA 158
LS + P+L ++ L + L++D +L +LP LQ+LKL NS+ G+++ C+
Sbjct: 755 LSGPIEKLPDPQEIQPNLTKIILEKSLLVQDIFVILGKLPNLQMLKLLINSFFGKEITCS 814
Query: 159 GSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLD 218
SG FP+L L L + L+EW + GA+P L L+++ C L+K+PE + +LR+L
Sbjct: 815 ASG-FPKLHGLELSELVNLEEWRVDDGAMPSLRHLVIDHCDQLKKIPEGFQYLTALRELF 873
Query: 219 LHWPQTELRQRLRTFEDMEWRYDIQLYPS 247
L E R++ +W Y IQ PS
Sbjct: 874 LLNMPDEFEIRIKG---DDW-YKIQHIPS 898
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081343|emb|CBI17689.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 123/231 (53%), Gaps = 36/231 (15%)
Query: 10 PEDIWMMQKL--MHLNFGCIT--LPAPPKNYFSSLKNLIFISALHPSSCTPDILGRLPSV 65
P IW MQ+L ++LN C + +P P S+L+ L+ + + T D L + ++
Sbjct: 1062 PSPIWNMQQLRQLYLNERCHSKVMPQPSVGSSSTLRVLVGLFVDEETPVT-DGLDQFINL 1120
Query: 66 QTLRISGNL-SCYHSGVSKSLCELHKLECLKL--VNESK--------------------- 101
+ L ++ +L S V + + +L+ LE L+L ++E
Sbjct: 1121 RKLGLTCHLPSSQQEAVVEWVQKLNNLESLRLKSIDEENQFWDLDLKPLAHHVNLSCLYL 1180
Query: 102 LSRM----VLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLAC 157
L R+ V SE FP SLI+L+LS +EL EDPM L++LP L+VL+ NSYLG+ + C
Sbjct: 1181 LGRLKNPSVGSE--FPHSLIELTLSGSELEEDPMQTLDKLPNLKVLRFLANSYLGKNMGC 1238
Query: 158 AGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEEL 208
+ SGGFP+L+VL L + L+EW + GAL L L + C L+ LPE L
Sbjct: 1239 S-SGGFPQLQVLKLWKLEQLEEWNVDEGALQALWDLDIRSCKRLKMLPEAL 1288
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495931|ref|XP_003635117.1| PREDICTED: probable disease resistance protein RDL6/RF9-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 123/231 (53%), Gaps = 36/231 (15%)
Query: 10 PEDIWMMQKL--MHLNFGCIT--LPAPPKNYFSSLKNLIFISALHPSSCTPDILGRLPSV 65
P IW MQ+L ++LN C + +P P S+L+ L+ + + T D L + ++
Sbjct: 1109 PSPIWNMQQLRQLYLNERCHSKVMPQPSVGSSSTLRVLVGLFVDEETPVT-DGLDQFINL 1167
Query: 66 QTLRISGNL-SCYHSGVSKSLCELHKLECLKL--VNESK--------------------- 101
+ L ++ +L S V + + +L+ LE L+L ++E
Sbjct: 1168 RKLGLTCHLPSSQQEAVVEWVQKLNNLESLRLKSIDEENQFWDLDLKPLAHHVNLSCLYL 1227
Query: 102 LSRM----VLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLAC 157
L R+ V SE FP SLI+L+LS +EL EDPM L++LP L+VL+ NSYLG+ + C
Sbjct: 1228 LGRLKNPSVGSE--FPHSLIELTLSGSELEEDPMQTLDKLPNLKVLRFLANSYLGKNMGC 1285
Query: 158 AGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEEL 208
+ SGGFP+L+VL L + L+EW + GAL L L + C L+ LPE L
Sbjct: 1286 S-SGGFPQLQVLKLWKLEQLEEWNVDEGALQALWDLDIRSCKRLKMLPEAL 1335
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147795782|emb|CAN61050.1| hypothetical protein VITISV_023621 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 121/229 (52%), Gaps = 32/229 (13%)
Query: 10 PEDIWMMQKL--MHLNFGCIT--LPAPPKNYFSSLKNLIFISALHPSSCTPDILGRLPSV 65
P IW MQ+L ++LN C + +P P S+L+ L+ + + T D L + ++
Sbjct: 1109 PSPIWNMQQLRQLYLNERCHSKVMPQPSVGSSSTLRVLVGLFVDEETPVT-DGLDQFINL 1167
Query: 66 QTLRISGNL-SCYHSGVSKSLCELHKLECLKL--VNESK----LSRMVLSEY-------- 110
+ L ++ +L S V + + +L+ LE L+L ++E L L+ +
Sbjct: 1168 RKLGLTCHLPSSQQEAVVEWVQKLNNLESLRLKSIDEENQFWDLDLKPLAHHVNLSCLYL 1227
Query: 111 -----------QFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAG 159
FP SLI+L+LS +EL EDPM L++LP L+VL+ NSYLG+ + C+
Sbjct: 1228 LGRLKNPSVGSXFPHSLIELTLSGSELEEDPMQTLDKLPNLKVLRFLANSYLGKNMGCS- 1286
Query: 160 SGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEEL 208
SGGFP+L+VL L + L+EW + GAL L L + C L+ LPE L
Sbjct: 1287 SGGFPQLQVLKLWKLEQLEEWNVDEGALQALWDLDIRSCKRLKMLPEAL 1335
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491404|ref|XP_002274414.2| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 140/275 (50%), Gaps = 37/275 (13%)
Query: 1 MPSSYIDQSPEDIWMMQKLMHLNFGCITLPA--PPKNYFSSLKNLIFISAL--HPSSCTP 56
+ S+ ++ P IW MQKL HL F + A PP + +SL NL + + + +S
Sbjct: 632 LRSTLLNPIPIVIWKMQKLRHLYFNELEEMAVNPPTD--ASLANLQTLHGICINQTSYVE 689
Query: 57 DILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKL----------------VNES 100
+ L +L +++ L + G+L + + K + +LECLKL +N S
Sbjct: 690 NGLSKLTNLRELGLHGDLLLHEEAIGKWIFSSERLECLKLHTRDVMGDFAKNAIPKLNFS 749
Query: 101 K------------LSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRN 148
++++ +EY FP +L +LSL + LMEDPM LE L L+VLKLK +
Sbjct: 750 SHPHLIKLHLKGFMAKLFDAEY-FPQNLTELSLKGSFLMEDPMVKLEMLQSLRVLKLKHS 808
Query: 149 SYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEEL 208
+YLG+++ C+ GGFP+L L L + ++ W + GA+ +L L + C L+ +P L
Sbjct: 809 AYLGKEMICS-CGGFPQLHFLKLSFLNTVERWRIEDGAMGRLRQLEIIECKRLKIVPRGL 867
Query: 209 WCIKSLRKLDLHWPQTELRQRLRTFEDMEWRYDIQ 243
+ ++ KL L + E +++ + W Y I+
Sbjct: 868 QPVTTIHKLKLGYMPREFEMKVQERQGENW-YKIE 901
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|32453357|gb|AAP82810.1| resistance protein RPP8-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 26/214 (12%)
Query: 37 FSSLKNLIFISALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKL 96
S L NL ++ + L R+ +Q L +S + C +S SL EL LE L
Sbjct: 293 LSDLVNLEYLFGFSTQHSSVTDLLRMTKLQILGVSLSERCNFETLSSSLRELRNLESLNF 352
Query: 97 V-----------NESKLSRMVL--------------SEYQFPPSLIQLSLSNTELMEDPM 131
+ E L + E+QFPP L Q+ L N + EDPM
Sbjct: 353 LCTPQTNMVDYMGEFVLDHFIHLKDLGLVVRMSKIPDEHQFPPHLAQIYLYNCRMEEDPM 412
Query: 132 PMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLE 191
P+LE+L L+ ++LK +++GR++ C+ GGF +L L + L+EW + G++P L
Sbjct: 413 PILEKLLHLKSVQLKTKAFIGRRMVCS-KGGFTQLCALDISKQSELEEWIVEEGSMPCLR 471
Query: 192 SLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQTE 225
+L ++ C L++LP+ L I SL++L + + E
Sbjct: 472 TLTIHDCEKLKELPDGLKYITSLKELKIEGMKRE 505
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|32453355|gb|AAP82809.1| resistance protein RPP8-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 105/208 (50%), Gaps = 15/208 (7%)
Query: 37 FSSLKNLIFISALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKL 96
L NL ++ + L R+ ++ +S + C +S SL EL LE L
Sbjct: 294 LGDLVNLEYLYGFSTQHSSVTDLLRMTKLRHFTVSLSERCNFETLSSSLRELRNLETLNY 353
Query: 97 VNESKLSRMVL--------------SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQV 142
+ E L + ++QFPP L + L N + EDPMP+LE+L L+
Sbjct: 354 MGEFVLDHFIHLKELGLAGPMSKIPDQHQFPPHLTHIHLFNCRMEEDPMPILEKLLHLKS 413
Query: 143 LKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLR 202
++L +++GR++ C+ GGF +L L + L+EW + G++P L +L ++ C L+
Sbjct: 414 VQLAVEAFVGRRMVCS-KGGFTQLCALDISKESELEEWIVEEGSMPCLRTLTIHDCEKLK 472
Query: 203 KLPEELWCIKSLRKLDLHWPQTELRQRL 230
+LP+ L I SL++L + + E +++L
Sbjct: 473 ELPDGLKYITSLKELKIKEMKREWKEKL 500
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255566504|ref|XP_002524237.1| Disease resistance protein RPP8, putative [Ricinus communis] gi|223536514|gb|EEF38161.1| Disease resistance protein RPP8, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 111/199 (55%), Gaps = 18/199 (9%)
Query: 52 SSCTPDILGRLPSVQTLRIS-GNLSCYHSGVS-------KSLCELHKLECLKLVNESKLS 103
S+ P +G L S+ TL + G L + G+ K LC H+L +KL E K++
Sbjct: 647 STSLPASIGNLRSLYTLDLRLGRLRSLNMGMRRQNFPNFKPLCHCHQLTKVKL--EGKIA 704
Query: 104 RMVLS-----EYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACA 158
V S EY PPSL +L+L ++L +DPMP+LE+LP L+ L L+ +Y G + C+
Sbjct: 705 EDVRSLHHSLEY-LPPSLAKLTLCRSQLRQDPMPILEKLPNLRFLSLE-GTYKGPVMVCS 762
Query: 159 GSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLD 218
G FP+L+V+ L + L+EW + GA+P L +L ++ LR +PE L + +L++L+
Sbjct: 763 AYG-FPQLEVVKLGWLDKLEEWMVEEGAMPCLRTLDIDSLRELRTIPEGLKFVGTLQELN 821
Query: 219 LHWPQTELRQRLRTFEDME 237
+ W +R+R + E
Sbjct: 822 VRWMPEAFEKRIRVINNEE 840
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567194|ref|XP_003551806.1| PREDICTED: disease resistance protein RPP13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 19/231 (8%)
Query: 13 IWMMQKLMHLNF-GCITLPAPPKNYFSSLKNLIFISALHPSSCTPDI-LGRLPSVQTLRI 70
IW +++L HL G LP P N +L+ L+ +S +P + G P ++ L
Sbjct: 517 IWTLKRLRHLYLMGNGKLPLPKANRMENLQTLV-LSGDYPQQIIFLLNSGIFPRLRKL-- 573
Query: 71 SGNLSCYHS----GVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTEL 126
L CY+S G+ SL L L LK++ +L +L FP +L +++L +
Sbjct: 574 --ALRCYNSVEGPGMLPSLQRLSNLHSLKVMRGCEL---LLDTNAFPSNLTKITLKDLHA 628
Query: 127 MEDP---MPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMG 183
DP M L RLP LQ+LK+ + L G G FP+L+VLH+ + + +W +
Sbjct: 629 FRDPQSLMKTLGRLPNLQILKVSFCMHNDIHLDI-GRGEFPQLQVLHMTQIN-VRQWRLE 686
Query: 184 AGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQTELRQRLRTFE 234
A+P+L L++ C L +LPEELW + +LR + + WP EL L+ E
Sbjct: 687 KDAMPRLRHLLIEECYGLSELPEELWSMTALRLVHVSWPSQELANSLKNVE 737
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 249 | ||||||
| TAIR|locus:2169523 | 901 | AT5G35450 [Arabidopsis thalian | 0.558 | 0.154 | 0.337 | 2.1e-18 | |
| TAIR|locus:2176486 | 908 | RPP8 "RECOGNITION OF PERONOSPO | 0.514 | 0.140 | 0.353 | 2.7e-18 | |
| TAIR|locus:2152536 | 908 | AT5G48620 [Arabidopsis thalian | 0.514 | 0.140 | 0.338 | 5.1e-17 | |
| TAIR|locus:2037639 | 907 | AT1G58390 "AT1G58390" [Arabido | 0.726 | 0.199 | 0.345 | 4.7e-16 | |
| TAIR|locus:2025916 | 906 | AT1G59780 "AT1G59780" [Arabido | 0.453 | 0.124 | 0.408 | 9.8e-16 | |
| TAIR|locus:504956182 | 1049 | AT1G58848 [Arabidopsis thalian | 0.393 | 0.093 | 0.393 | 4.1e-15 | |
| TAIR|locus:2826978 | 1049 | AT1G59218 [Arabidopsis thalian | 0.393 | 0.093 | 0.393 | 4.1e-15 | |
| TAIR|locus:504956184 | 1017 | AT1G58807 "AT1G58807" [Arabido | 0.397 | 0.097 | 0.39 | 1.6e-13 | |
| TAIR|locus:2827038 | 1017 | AT1G59124 "AT1G59124" [Arabido | 0.397 | 0.097 | 0.39 | 1.6e-13 | |
| TAIR|locus:504956186 | 1138 | AT1G58602 [Arabidopsis thalian | 0.526 | 0.115 | 0.345 | 2.3e-13 |
| TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 234 (87.4 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 49/145 (33%), Positives = 88/145 (60%)
Query: 102 LSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSG 161
LS+ + ++Q PP + + L + EDPMP+LE+L L+ ++L+R +++GR++ C+ G
Sbjct: 750 LSK-IPDQHQLPPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVCS-KG 807
Query: 162 GFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHW 221
GFP+L+ L + L+EW + G++P L LI++ C L +LP+ L + SL++L +
Sbjct: 808 GFPQLRALQISEQSELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKIEG 867
Query: 222 PQTELRQRLRTFEDMEWRYDIQLYP 246
+ E +++L ED Y +Q P
Sbjct: 868 MKREWKEKL-VGEDY---YKVQHIP 888
|
|
| TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 2.7e-18, P = 2.7e-18
Identities = 46/130 (35%), Positives = 84/130 (64%)
Query: 101 KLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGS 160
++S+ + ++QFPP L+ L L + EDPMP+LE+L L+ ++L R ++LG ++ C+
Sbjct: 758 RMSK-IPDQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVCS-K 815
Query: 161 GGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLH 220
GGFP+L V+ + L+EW + G++P L +L ++ C L++LP+ L I SL++L +
Sbjct: 816 GGFPQLCVIEISKESELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIE 875
Query: 221 WPQTELRQRL 230
+ E +++L
Sbjct: 876 GMKREWKEKL 885
|
|
| TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 221 (82.9 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 44/130 (33%), Positives = 82/130 (63%)
Query: 101 KLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGS 160
++S+ + ++QFPP L + L + + EDPMP+LE+L L+ + L +++GR++ C+
Sbjct: 758 RMSK-IPDQHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVCS-K 815
Query: 161 GGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLH 220
GGFP+L L + L+EW + G++P L +L ++ C L++LP+ L I SL++L +
Sbjct: 816 GGFPQLCALGISGESELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIR 875
Query: 221 WPQTELRQRL 230
+ E +++L
Sbjct: 876 EMKREWKEKL 885
|
|
| TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 212 (79.7 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 69/200 (34%), Positives = 99/200 (49%)
Query: 40 LKNLIFISALHPSS---C------TPDI-LGRLPSVQTLR--ISG--NLS-CYHSGV-SK 83
L+ L++ S H SS C T I L R+ S +TL ISG NL Y G SK
Sbjct: 681 LETLVYFSTWHSSSKDLCGMTRLMTLAIRLTRVTSTETLSASISGLRNLEYLYIVGTHSK 740
Query: 84 SXXXXXXXXXXXXVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVL 143
+ L + + FP L + LS L EDPMP+LE+L L+ +
Sbjct: 741 KMREEGIVLDFIHLKHLLLDLYMPRQQHFPSRLTFVKLSECGLEEDPMPILEKLLHLKGV 800
Query: 144 KLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRK 203
L + SY GR++ C+G GGFP+LK L + + +EW + G++P LE+L + C L++
Sbjct: 801 ILLKGSYCGRRMVCSG-GGFPQLKKLEIVGLNKWEEWLVEEGSMPLLETLSILDCEELKE 859
Query: 204 LPEELWCIKSLR--KLDLHW 221
+P+ L I SL L W
Sbjct: 860 IPDGLRFIYSLELVMLGTRW 879
|
|
| TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 209 (78.6 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 47/115 (40%), Positives = 72/115 (62%)
Query: 104 RMVLSEYQ-FPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGG 162
R +L + Q FP L +SL L EDPMP LE+L +L+V+ L N+Y+GR++ C G GG
Sbjct: 742 RPMLPDVQHFPSHLTTISLVYCFLEEDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTG-GG 800
Query: 163 FPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKL 217
FP L L + + L+EW + G++P L +L + C L+++P+ L I SL++L
Sbjct: 801 FPPLHRLEIWGLDALEEWIVEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKEL 855
|
|
| TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 204 (76.9 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 39/99 (39%), Positives = 65/99 (65%)
Query: 109 EYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKV 168
E FP L L L + L EDPMP+LE+L +L+ L+L+R S+ G+++ C+ SGGFP+L+
Sbjct: 772 EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCS-SGGFPQLQK 830
Query: 169 LHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEE 207
L +K + ++W + ++P L +L + C L++LP+E
Sbjct: 831 LSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDE 869
|
|
| TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 204 (76.9 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 39/99 (39%), Positives = 65/99 (65%)
Query: 109 EYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKV 168
E FP L L L + L EDPMP+LE+L +L+ L+L+R S+ G+++ C+ SGGFP+L+
Sbjct: 772 EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCS-SGGFPQLQK 830
Query: 169 LHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEE 207
L +K + ++W + ++P L +L + C L++LP+E
Sbjct: 831 LSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDE 869
|
|
| TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 189 (71.6 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 39/100 (39%), Positives = 63/100 (63%)
Query: 108 SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELK 167
+E FP L L L + L EDPMP+LE+L +L+ L+L S+ G+K+ C+ SGGFP+L+
Sbjct: 763 TEQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVCS-SGGFPQLQ 821
Query: 168 VLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEE 207
L L + ++W + ++P L +L + C L++LP+E
Sbjct: 822 RLSLLKLEEWEDWKVEESSMPLLRTLDIQVCRKLKQLPDE 861
|
|
| TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 189 (71.6 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 39/100 (39%), Positives = 63/100 (63%)
Query: 108 SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELK 167
+E FP L L L + L EDPMP+LE+L +L+ L+L S+ G+K+ C+ SGGFP+L+
Sbjct: 763 TEQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVCS-SGGFPQLQ 821
Query: 168 VLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEE 207
L L + ++W + ++P L +L + C L++LP+E
Sbjct: 822 RLSLLKLEEWEDWKVEESSMPLLRTLDIQVCRKLKQLPDE 861
|
|
| TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 188 (71.2 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 48/139 (34%), Positives = 78/139 (56%)
Query: 109 EYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKV 168
E FP L + L + EDPM +LE+L L+ + L + S+ G+++ C+G GGFP+L+
Sbjct: 1003 EQHFPSHLTTVFLLGMYVEEDPMRILEKLLHLKNVSLFQ-SFSGKRMVCSG-GGFPQLQK 1060
Query: 169 LHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQTELRQ 228
L ++ + W +EW + G++P L +L + C L++LP+ L I SL+ L + R
Sbjct: 1061 LSIREIEW-EEWIVEQGSMPLLHTLYIGVCPNLKELPDGLRFIYSLKNLIV-----SKRW 1114
Query: 229 RLRTFEDMEWRYDIQLYPS 247
+ R E E Y +Q PS
Sbjct: 1115 KKRLSEGGEDYYKVQHIPS 1133
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00007819001 | SubName- Full=Chromosome undetermined scaffold_626, whole genome shotgun sequence (Chromosome undetermined scaffold_1090, whole genome shotgun sequence); (903 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 249 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.87 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.85 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.82 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.77 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.71 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.71 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.71 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.7 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.67 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.64 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.57 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.55 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.46 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.46 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.45 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.42 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.4 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.38 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.32 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.25 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.2 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.14 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.99 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.97 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.94 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.93 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.92 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.9 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.85 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.85 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.84 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.84 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.79 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.77 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.74 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.72 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.61 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.59 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.58 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.57 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.52 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.47 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.33 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.3 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.06 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.96 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.89 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.88 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.88 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.84 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.83 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.77 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.76 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.71 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.67 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.56 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.55 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.31 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.18 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.13 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.09 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.96 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.84 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.63 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 96.46 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.35 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.04 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.02 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.02 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.9 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 94.74 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.09 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 93.83 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 88.48 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 85.0 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 82.6 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 81.4 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-22 Score=186.24 Aligned_cols=214 Identities=23% Similarity=0.253 Sum_probs=139.0
Q ss_pred CCCCcc-ccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCcccc
Q 039403 2 PSSYID-QSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 2 ~~~~l~-~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
+++.++ .+|..++.+++|++| +++| .+.+.+|..++++++|++|++.++. +.+|..++++++|+.|++++|. .
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l 224 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN--L 224 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc--c
Confidence 445554 677788888888888 7777 7777788888888888888855555 5677778888888888888876 6
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCcee-eeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceee
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSR-MVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~-l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
.+.+|..+.++++|+.|+++++. +.. ++..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.. +
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p 301 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI-P 301 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCce-eccccChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC-C
Confidence 66677777888888888887754 332 2224555 666666666666665555556666666666666666555443 4
Q ss_pred eeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCC
Q 039403 157 CAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 157 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~ 222 (249)
.. +..+++|+.|++++|.....+|..+..+++|+.|++++|.+.+.+|..++.+++|+.+++++|
T Consensus 302 ~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 302 EL-VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred hh-HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 44 455566666666653222244555555666666666666655555555555666666666555
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-21 Score=180.97 Aligned_cols=215 Identities=25% Similarity=0.278 Sum_probs=133.2
Q ss_pred CCCCc-cccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCcccc
Q 039403 2 PSSYI-DQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 2 ~~~~l-~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
++|.+ +.+|..++++++|++| +.+| .+.+.+|..++++++|++|++.++. +.+|..++++++|+.|++++|. .
T Consensus 172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l 248 (968)
T PLN00113 172 GGNVLVGKIPNSLTNLTSLEFLTLASN-QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN--L 248 (968)
T ss_pred ccCcccccCChhhhhCcCCCeeeccCC-CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce--e
Confidence 44554 4788888888888888 8877 7777788888888888888865555 5677788888888888888886 6
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCcee-eeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceee
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSR-MVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~-l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
.+.+|..+.++++|+.|+++++. +.. ++..+.. +++|+.|++++|.+.+..|..+..+++|+.|++.+|.+.+.. +
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~-~ 325 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNK-LSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI-P 325 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCe-eeccCchhHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC-C
Confidence 66677778888888888887754 332 1113444 455555555555555444555555555555555555444433 3
Q ss_pred eeCCCCCCcccEEEeccC-----------------------Cccc-ceeccCcccccccceeeccCcCcCCCccccccCc
Q 039403 157 CAGSGGFPELKVLHLKSM-----------------------YWLD-EWTMGAGALPKLESLIVNPCAYLRKLPEELWCIK 212 (249)
Q Consensus 157 ~~~~~~~~~L~~L~l~~~-----------------------~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~ 212 (249)
.. +..+++|+.|++++| +.++ .+|..+..+++|+.|++++|.+.+.+|..+..++
T Consensus 326 ~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 404 (968)
T PLN00113 326 VA-LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR 404 (968)
T ss_pred hh-HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC
Confidence 33 444444555555442 2222 3444444444555555555555445555555666
Q ss_pred CccEEEccCCc
Q 039403 213 SLRKLDLHWPQ 223 (249)
Q Consensus 213 ~L~~l~l~~~~ 223 (249)
+|+.+++++|.
T Consensus 405 ~L~~L~L~~n~ 415 (968)
T PLN00113 405 SLRRVRLQDNS 415 (968)
T ss_pred CCCEEECcCCE
Confidence 66666666664
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-22 Score=168.76 Aligned_cols=215 Identities=20% Similarity=0.238 Sum_probs=186.8
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC---CCcchhcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS---SCTPDILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~ 76 (249)
|++|.+..+|+.+.++.+|++| +++| .+.---...+..|++|+.|..++.+ ..+|..+..+.||..++++.|
T Consensus 157 LS~NrLe~LPPQ~RRL~~LqtL~Ls~N-PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N--- 232 (1255)
T KOG0444|consen 157 LSNNRLEMLPPQIRRLSMLQTLKLSNN-PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN--- 232 (1255)
T ss_pred cccchhhhcCHHHHHHhhhhhhhcCCC-hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc---
Confidence 5789999999999999999999 8888 5532222334467777778744444 679999999999999999998
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceee
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
....+|.++.++++|+.|+++++. ++++...... +.+|+.|.++.|+++ .+|..+.+++.|+.|.+.+|+++-+..|
T Consensus 233 ~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~-W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 233 NLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGE-WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIP 309 (1255)
T ss_pred CCCcchHHHhhhhhhheeccCcCc-eeeeeccHHH-Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCc
Confidence 667789999999999999999988 9999887777 889999999999998 8999999999999999999988766667
Q ss_pred eeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCcHH
Q 039403 157 CAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQTE 225 (249)
Q Consensus 157 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~~~ 225 (249)
+. ++.+.+|+.++.++ |.+.-+|..++.|..|+.|.|+.|++. .+|+.|.-++.|+.||+..|++.
T Consensus 310 SG-IGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 310 SG-IGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cc-hhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 77 99999999999998 788889999999999999999999976 58999999999999999999743
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-20 Score=157.67 Aligned_cols=212 Identities=25% Similarity=0.258 Sum_probs=168.1
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC---CCcchhcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS---SCTPDILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~ 76 (249)
|..|++.++|+.++.|.+|++| +..| .+. .+...++.++.|+.+.+..++ ..+|+.+..+..|+.|+++.|
T Consensus 39 Lnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN--- 113 (1255)
T KOG0444|consen 39 LNRTKLEQVPEELSRLQKLEHLSMAHN-QLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN--- 113 (1255)
T ss_pred echhhhhhChHHHHHHhhhhhhhhhhh-hhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh---
Confidence 4678999999999999999999 8888 554 577788899999999966666 789999999999999999999
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCcee
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKL 155 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 155 (249)
.....|..+.+-+++-.|+++.+. ++.++- .+.+ +.-|-.||++.|++. .+|+.+.++..|++|.+++|.+....
T Consensus 114 qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfin-LtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ- 189 (1255)
T KOG0444|consen 114 QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFIN-LTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQ- 189 (1255)
T ss_pred hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHh-hHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHH-
Confidence 566788889899999999999988 887775 3445 667888999999987 78888999999999999988765322
Q ss_pred eeeCCCCCCcccEEEeccCCc-ccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 156 ACAGSGGFPELKVLHLKSMYW-LDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
... +-.+.+|+.|++++... +..+|..+..+.+|..++++.|.+. .+|+.+-.+++|++|++++|.
T Consensus 190 LrQ-LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 190 LRQ-LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred Hhc-CccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCc
Confidence 222 33445667777776332 2267777777888888888887754 467777777888888888773
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-20 Score=147.44 Aligned_cols=207 Identities=20% Similarity=0.153 Sum_probs=144.4
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSG 80 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (249)
+++++++|+.++....+.++ .+.| .+. +++++++.+-.++.|+...++ ..+|..++++.++..+++.++. ...
T Consensus 100 ~n~ls~lp~~i~s~~~l~~l~~s~n-~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~---l~~ 174 (565)
T KOG0472|consen 100 HNKLSELPEQIGSLISLVKLDCSSN-ELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK---LKA 174 (565)
T ss_pred cchHhhccHHHhhhhhhhhhhcccc-cee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc---hhh
Confidence 34555555555555555555 4444 333 455555555555555533333 4555555556666666666553 233
Q ss_pred hhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCC
Q 039403 81 VSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGS 160 (249)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 160 (249)
+|+..-+|++|++++...+. ++.++..++. +.+|..|++..|.+. ..| .|+.|+.|+.+.++.|.+.- .++.-.
T Consensus 175 l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~--lpae~~ 248 (565)
T KOG0472|consen 175 LPENHIAMKRLKHLDCNSNL-LETLPPELGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM--LPAEHL 248 (565)
T ss_pred CCHHHHHHHHHHhcccchhh-hhcCChhhcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh--hHHHHh
Confidence 33333347777777777766 7777777777 888888888888886 454 78888888888888776632 233304
Q ss_pred CCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 161 GGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 161 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
..++++..|++.+ |.++++|.+++-+++|.+||+++|.++ .+|..++++ .|+++.+.|||
T Consensus 249 ~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 249 KHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccccceeeeccc-cccccCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCc
Confidence 4788999999999 899999999999999999999999976 588899999 99999999998
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-18 Score=145.82 Aligned_cols=214 Identities=22% Similarity=0.192 Sum_probs=158.9
Q ss_pred CCCCCccccchh-hhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSPED-IWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp~~-i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~ 76 (249)
|+.|.++.+|.. +.++++|+.| +..| .+...-.-.|..+++|+.|.+-+++ ..+.+ .|..|.+++.|+++.|.
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-- 280 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-- 280 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch--
Confidence 467888999886 4449999999 8888 6654434567788899998866665 44444 34578899999999886
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCcee
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKL 155 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 155 (249)
...---..+..+++|+.|+++.+. ++++.. .+.. +++|+.|++++|.++.-.+..+..++.|+.|+++.|.++.--
T Consensus 281 l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~Wsf-tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~- 357 (873)
T KOG4194|consen 281 LQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSF-TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA- 357 (873)
T ss_pred hhhhhcccccccchhhhhccchhh-hheeecchhhh-cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH-
Confidence 544444567789999999999988 888888 4555 889999999999998777788888888888988888775422
Q ss_pred eeeCCCCCCcccEEEeccCCccc-cee---ccCcccccccceeeccCcCcCCCc-cccccCcCccEEEccCCc
Q 039403 156 ACAGSGGFPELKVLHLKSMYWLD-EWT---MGAGALPKLESLIVNPCAYLRKLP-EELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~-~~~---~~~~~~~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~l~l~~~~ 223 (249)
... +..+++|+.|+++. |.+. .+. ..+.+++.|+.|.+.+|++- .+| ..+..+..|++||+.+|.
T Consensus 358 e~a-f~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 358 EGA-FVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hhH-HHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCc
Confidence 233 56677888888888 5555 222 23446888888888888853 454 466778888888888885
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.2e-17 Score=151.14 Aligned_cols=214 Identities=20% Similarity=0.185 Sum_probs=133.7
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCcccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
|+++.+.++|.++..+++|+.| ++++ ...+.+| .++.+++|++|++.+|. ..+|..++++++|+.|++++|. .
T Consensus 618 L~~s~l~~L~~~~~~l~~Lk~L~Ls~~-~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~--~ 693 (1153)
T PLN03210 618 MQGSKLEKLWDGVHSLTGLRNIDLRGS-KNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE--N 693 (1153)
T ss_pred CcCccccccccccccCCCCCEEECCCC-CCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC--C
Confidence 4567788888888888888888 7776 4445666 37778888888866666 6778888888888888888876 5
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCc----------eeeee---c------------------------------------
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKL----------SRMVL---S------------------------------------ 108 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L----------~~l~l---~------------------------------------ 108 (249)
...+|..+ ++++|+.|+++++..+ +.+.+ .
T Consensus 694 L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 694 LEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred cCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchh
Confidence 55565544 5666666666553211 11111 0
Q ss_pred -CCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccC-------------
Q 039403 109 -EYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSM------------- 174 (249)
Q Consensus 109 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------------- 174 (249)
... +++|+.|++++|......|..++.+++|+.|++.+|...+.. |.. . .+++|+.|++++|
T Consensus 773 ~~~~-~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L-P~~-~-~L~sL~~L~Ls~c~~L~~~p~~~~nL 848 (1153)
T PLN03210 773 MTML-SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL-PTG-I-NLESLESLDLSGCSRLRTFPDISTNI 848 (1153)
T ss_pred hhhc-cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee-CCC-C-CccccCEEECCCCCcccccccccccc
Confidence 001 235666666666555556777777777888887766433222 221 1 3344444444443
Q ss_pred -------CcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 175 -------YWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 175 -------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.++++|..+..+++|+.|++++|.....+|..+..++.|+.+++++|.
T Consensus 849 ~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 849 SDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 3344555555666777777777766555566666667777777777774
|
syringae 6; Provisional |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.1e-18 Score=142.11 Aligned_cols=212 Identities=21% Similarity=0.147 Sum_probs=92.0
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCcccccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
+|.++.||.......+|++| +..| .+...-..++..++.|+.|+++.+. .+++. .+..-.++++|++++|. ...
T Consensus 111 ~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~--It~ 187 (873)
T KOG4194|consen 111 KNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR--ITT 187 (873)
T ss_pred cchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc--ccc
Confidence 34444444444444444444 4333 3333223333344444444433333 22221 23333344444444443 222
Q ss_pred chhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeee
Q 039403 80 GVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACA 158 (249)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 158 (249)
--...|..+.+|..|.++++. +..++. .|.. +++|+.|++..|.+.-.--..+..+++|+.|.+..|.+..-. ...
T Consensus 188 l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~-L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~-DG~ 264 (873)
T KOG4194|consen 188 LETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKR-LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD-DGA 264 (873)
T ss_pred cccccccccchheeeecccCc-ccccCHHHhhh-cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc-Ccc
Confidence 112233333344444444433 333333 3444 444444444444433111122333344444444444332211 122
Q ss_pred CCCCCCcccEEEeccCCccccee-ccCcccccccceeeccCcCcCCCccccccCcCccEEEccCC
Q 039403 159 GSGGFPELKVLHLKSMYWLDEWT-MGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 159 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~ 222 (249)
|-.+.++++|+++. |.+.++. .++.++..|++|+++.|.+..--++.+..+++|++|++++|
T Consensus 265 -Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 265 -FYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred -eeeecccceeeccc-chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 33445555555555 4444332 23445666666666666655433445556666777777666
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.5e-20 Score=146.18 Aligned_cols=208 Identities=24% Similarity=0.266 Sum_probs=174.3
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
.++++.++|++++.+..++.+ ++.| ++. ++|..++.+..+..|+...+. .+.+++++.+..|+.++..+| ...
T Consensus 76 ~~n~l~~lp~aig~l~~l~~l~vs~n-~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N---~i~ 150 (565)
T KOG0472|consen 76 HDNKLSQLPAAIGELEALKSLNVSHN-KLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN---QIS 150 (565)
T ss_pred ccchhhhCCHHHHHHHHHHHhhcccc-hHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc---ccc
Confidence 367888888888888888888 7776 544 788888888888888855555 778888888888888888877 445
Q ss_pred chhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeC
Q 039403 80 GVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAG 159 (249)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 159 (249)
.+|+.+.++.++..+++.++. +..++...-+ ++.|++++...|-++ ..|+.++.+.+|+.|++..|++.. +| .
T Consensus 151 slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~--lP-e- 223 (565)
T KOG0472|consen 151 SLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF--LP-E- 223 (565)
T ss_pred cCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc--CC-C-
Confidence 677788888888888888876 6666655556 788999999998886 889999999999999999998754 24 6
Q ss_pred CCCCCcccEEEeccCCcccceeccCc-ccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 160 SGGFPELKVLHLKSMYWLDEWTMGAG-ALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
|..|..|+++++.. |.++.+|++.+ +++++..||+.+|++ +++|+++.-+.+|+++|+++|.
T Consensus 224 f~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 224 FPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred CCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccCCc
Confidence 88999999999998 89999999887 899999999999995 5799999999999999999996
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=142.34 Aligned_cols=208 Identities=23% Similarity=0.199 Sum_probs=140.2
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCcccccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
++.++.+|..+ ..++|++| +.++ .+. .++..+..+++|+.|++.+++ ..+| .+..+++|+.|++++|. ...
T Consensus 598 ~~~l~~lP~~f-~~~~L~~L~L~~s-~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~--~L~ 671 (1153)
T PLN03210 598 KYPLRCMPSNF-RPENLVKLQMQGS-KLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCS--SLV 671 (1153)
T ss_pred CCCCCCCCCcC-CccCCcEEECcCc-ccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCC--Ccc
Confidence 55677788776 46888888 7777 554 577778889999999966555 4555 47788999999999987 677
Q ss_pred chhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCc------
Q 039403 80 GVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGR------ 153 (249)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------ 153 (249)
.+|..+.++++|+.|+++++..++.++..+ + +++|+.|++++|......|.. ..+|+.|++.++.+..-
T Consensus 672 ~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~-l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l 746 (1153)
T PLN03210 672 ELPSSIQYLNKLEDLDMSRCENLEILPTGI-N-LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRL 746 (1153)
T ss_pred ccchhhhccCCCCEEeCCCCCCcCccCCcC-C-CCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccc
Confidence 788889999999999998854365555322 4 566777777666433222221 23444444444432210
Q ss_pred -------------------e---eeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccC
Q 039403 154 -------------------K---LACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCI 211 (249)
Q Consensus 154 -------------------~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l 211 (249)
. .+.. ...+++|+.|++++|..+.++|..++.+++|+.|++++|...+.+|..+ .+
T Consensus 747 ~~L~~L~l~~~~~~~l~~~~~~l~~~~-~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L 824 (1153)
T PLN03210 747 ENLDELILCEMKSEKLWERVQPLTPLM-TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NL 824 (1153)
T ss_pred cccccccccccchhhccccccccchhh-hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cc
Confidence 0 0000 1123577788888766677788888888888888888887666677654 57
Q ss_pred cCccEEEccCCc
Q 039403 212 KSLRKLDLHWPQ 223 (249)
Q Consensus 212 ~~L~~l~l~~~~ 223 (249)
++|+.+++++|.
T Consensus 825 ~sL~~L~Ls~c~ 836 (1153)
T PLN03210 825 ESLESLDLSGCS 836 (1153)
T ss_pred cccCEEECCCCC
Confidence 778888888774
|
syringae 6; Provisional |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-17 Score=117.99 Aligned_cols=177 Identities=20% Similarity=0.274 Sum_probs=110.3
Q ss_pred hhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCC
Q 039403 14 WMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKL 91 (249)
Q Consensus 14 ~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 91 (249)
-.+.+++.| ++.| ++. .+|+.++++.+|+.|++..+. +++|..+..+++|+.|+++-| ....+|..|+.++.|
T Consensus 30 f~~s~ITrLtLSHN-Kl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn---rl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 30 FNMSNITRLTLSHN-KLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN---RLNILPRGFGSFPAL 104 (264)
T ss_pred cchhhhhhhhcccC-cee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh---hhhcCccccCCCchh
Confidence 345555555 5555 444 455556666666666633333 566666666666666666655 334456666666666
Q ss_pred cEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEE
Q 039403 92 ECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVL 169 (249)
Q Consensus 92 ~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 169 (249)
+.|+++.+. +.+-.+ .|.. +..|+.|+++.|.++ ..|+.++++++|+.|.+.+|.+.. +|.. ++.+.+|++|
T Consensus 105 evldltynn-l~e~~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~--lpke-ig~lt~lrel 178 (264)
T KOG0617|consen 105 EVLDLTYNN-LNENSLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS--LPKE-IGDLTRLREL 178 (264)
T ss_pred hhhhccccc-cccccCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh--CcHH-HHHHHHHHHH
Confidence 666666644 333222 3334 667777788888776 677888888888888888776543 3556 7777888888
Q ss_pred EeccCCcccceeccCcccc---cccceeeccCcCcC
Q 039403 170 HLKSMYWLDEWTMGAGALP---KLESLIVNPCAYLR 202 (249)
Q Consensus 170 ~l~~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~ 202 (249)
++.+ +.++.+|.+++.+. +=+.+.+..|++..
T Consensus 179 hiqg-nrl~vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 179 HIQG-NRLTVLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred hccc-ceeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 8888 77777777766442 23445555666443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.8e-17 Score=116.86 Aligned_cols=165 Identities=22% Similarity=0.258 Sum_probs=126.6
Q ss_pred CCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCC
Q 039403 37 FSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPS 115 (249)
Q Consensus 37 ~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~ 115 (249)
+.++.+++.|.++.+. ..+|+.+..+.+|+.|++.+| ..+.+|..++++++|+.|++.-+. +..++-.|+. +|.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn---qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs-~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN---QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGS-FPA 103 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc---hhhhcChhhhhchhhhheecchhh-hhcCccccCC-Cch
Confidence 4567778888855555 778888888889999998888 556678888888888888887655 5555557778 888
Q ss_pred ccEEEEEcccCCC-CCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCccccccccee
Q 039403 116 LIQLSLSNTELME-DPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLI 194 (249)
Q Consensus 116 L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 194 (249)
|+.||+++|.+.. .+|..+..+..|+.|.+++|.+. .+|.. ++.+.+|+.|.+.+ +.+-++|.+++.+..|+.|.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe--~lp~d-vg~lt~lqil~lrd-ndll~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE--ILPPD-VGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELH 179 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc--cCChh-hhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHh
Confidence 8888888887754 57777777888888888877663 24555 77888888888888 67777888888888888888
Q ss_pred eccCcCcCCCccccccC
Q 039403 195 VNPCAYLRKLPEELWCI 211 (249)
Q Consensus 195 l~~~~~~~~l~~~l~~l 211 (249)
+++|+++ -+|+.++.+
T Consensus 180 iqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 180 IQGNRLT-VLPPELANL 195 (264)
T ss_pred cccceee-ecChhhhhh
Confidence 8888865 466666544
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-15 Score=131.96 Aligned_cols=210 Identities=24% Similarity=0.250 Sum_probs=146.0
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
+.+.++.+|+-++.|.+|+.+ ...| .+ ..+|..+..+.+|+.|++..+. ..+|+.....+.|+.|++..|. ..
T Consensus 249 s~n~l~~lp~wi~~~~nle~l~~n~N-~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~---L~ 323 (1081)
T KOG0618|consen 249 SHNNLSNLPEWIGACANLEALNANHN-RL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN---LP 323 (1081)
T ss_pred chhhhhcchHHHHhcccceEecccch-hH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc---cc
Confidence 567889999999999999999 6666 66 5888899999999999955555 8888888889999999999884 33
Q ss_pred chhhhh-cCCC-CCcEEEEecCC--------C-----ceeeee-----------cCCCCCCCccEEEEEcccCCCCCccc
Q 039403 80 GVSKSL-CELH-KLECLKLVNES--------K-----LSRMVL-----------SEYQFPPSLIQLSLSNTELMEDPMPM 133 (249)
Q Consensus 80 ~~~~~l-~~l~-~L~~L~l~~~~--------~-----L~~l~l-----------~~~~~~~~L~~L~l~~~~~~~~~~~~ 133 (249)
.+|..+ .-.. ++..|+.+.+. + ++.+.+ .+.+ +++|++|++++|++.......
T Consensus 324 ~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~-~~hLKVLhLsyNrL~~fpas~ 402 (1081)
T KOG0618|consen 324 SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN-FKHLKVLHLSYNRLNSFPASK 402 (1081)
T ss_pred ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc-ccceeeeeecccccccCCHHH
Confidence 333321 1111 12222222211 0 222211 4555 778888888888887444466
Q ss_pred ccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcC-CCccccccCc
Q 039403 134 LERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLR-KLPEELWCIK 212 (249)
Q Consensus 134 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~l~~~l~~l~ 212 (249)
+.++..|++|+++||.++. ++.. +..|+.|++|.... |.+...| ++..++.|+.+|++.|.+.. .++..... +
T Consensus 403 ~~kle~LeeL~LSGNkL~~--Lp~t-va~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p 476 (1081)
T KOG0618|consen 403 LRKLEELEELNLSGNKLTT--LPDT-VANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-P 476 (1081)
T ss_pred HhchHHhHHHhcccchhhh--hhHH-HHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-c
Confidence 7888888888888887754 2445 66778888887777 6666777 67788899999999988654 23433222 7
Q ss_pred CccEEEccCCc
Q 039403 213 SLRKLDLHWPQ 223 (249)
Q Consensus 213 ~L~~l~l~~~~ 223 (249)
+|+++|++||.
T Consensus 477 ~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 477 NLKYLDLSGNT 487 (1081)
T ss_pred ccceeeccCCc
Confidence 89999999997
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=7e-15 Score=120.58 Aligned_cols=210 Identities=21% Similarity=0.111 Sum_probs=134.0
Q ss_pred cccchhhhhcccccee-eecCcccC------CCCCCcCCCCccccccccccCC--CCcchhcCCCc---ccCeEEEecCc
Q 039403 7 DQSPEDIWMMQKLMHL-NFGCITLP------APPKNYFSSLKNLIFISALHPS--SCTPDILGRLP---SVQTLRISGNL 74 (249)
Q Consensus 7 ~~lp~~i~~l~~L~~L-l~~~~~~~------~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~---~L~~L~l~~~~ 74 (249)
..+++.+...++++++ +..+ .+. ..++..+..+++|++|++.++. ...+..+..+. +|++|++++|.
T Consensus 41 ~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 41 KALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence 4567777777888888 6665 333 1223345567788888865555 23444444444 48888888885
Q ss_pred ccccc----chhhhhcCC-CCCcEEEEecCCCceee-----eecCCCCCCCccEEEEEcccCCCCC----cccccCCCCC
Q 039403 75 SCYHS----GVSKSLCEL-HKLECLKLVNESKLSRM-----VLSEYQFPPSLIQLSLSNTELMEDP----MPMLERLPRL 140 (249)
Q Consensus 75 ~~~~~----~~~~~l~~l-~~L~~L~l~~~~~L~~l-----~l~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L 140 (249)
... .+...+..+ ++|+.|+++++. +..- .-.+.. +++|+.|++++|.+++.. +..+..+++|
T Consensus 120 --~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L 195 (319)
T cd00116 120 --LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRA-NRDLKELNLANNGIGDAGIRALAEGLKANCNL 195 (319)
T ss_pred --cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHh-CCCcCEEECcCCCCchHHHHHHHHHHHhCCCC
Confidence 332 233455666 788888888865 4421 114555 678888999888876432 2334556789
Q ss_pred ceEEeeccccCCce---eeeeCCCCCCcccEEEeccCCcccc--eeccCc----ccccccceeeccCcCcC----CCccc
Q 039403 141 QVLKLKRNSYLGRK---LACAGSGGFPELKVLHLKSMYWLDE--WTMGAG----ALPKLESLIVNPCAYLR----KLPEE 207 (249)
Q Consensus 141 ~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~----~~~~L~~L~l~~~~~~~----~l~~~ 207 (249)
+.|++++|.+.+.. +... +..+++|++|++++| .++. +..... ..+.|++|++++|.++. .+.+.
T Consensus 196 ~~L~L~~n~i~~~~~~~l~~~-~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~ 273 (319)
T cd00116 196 EVLDLNNNGLTDEGASALAET-LASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV 273 (319)
T ss_pred CEEeccCCccChHHHHHHHHH-hcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH
Confidence 99999888775432 1223 556788999999884 4542 111111 23689999999988752 23445
Q ss_pred cccCcCccEEEccCCc
Q 039403 208 LWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 208 l~~l~~L~~l~l~~~~ 223 (249)
+..++.|+++++++|.
T Consensus 274 ~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 274 LAEKESLLELDLRGNK 289 (319)
T ss_pred HhcCCCccEEECCCCC
Confidence 5667889999999986
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-13 Score=121.11 Aligned_cols=191 Identities=20% Similarity=0.195 Sum_probs=106.4
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
+++++++.+|..+. ++++.| +.+| .+. .+|..+. .+|++|++.+++ ..+|..+. .+|+.|++++|. .
T Consensus 185 L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~--L- 253 (754)
T PRK15370 185 LKILGLTTIPACIP--EQITTLILDNN-ELK-SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR--I- 253 (754)
T ss_pred eCCCCcCcCCcccc--cCCcEEEecCC-CCC-cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc--c-
Confidence 35667788887664 578888 7776 665 5665544 578888855555 55665443 367778887774 3
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACA 158 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 158 (249)
..+|..+. .+|+.|+++++. +..++..+ +++|+.|++++|.++ ..|..+. ++|+.|++.+|.+.. . +..
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l---~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-L-P~~ 322 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNK-ISCLPENL---PEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-L-PET 322 (754)
T ss_pred CcCChhHh--CCCCEEECcCCc-cCcccccc---CCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-C-Ccc
Confidence 34555443 467777777765 66543222 346777777777665 3333322 345566666555542 1 211
Q ss_pred CCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCC
Q 039403 159 GSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 159 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~ 222 (249)
..++|+.|.+++ +.++.+|..+. ++|+.|++++|.+. .+|..+ .+.|+.|++++|
T Consensus 323 ---l~~sL~~L~Ls~-N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N 377 (754)
T PRK15370 323 ---LPPGLKTLEAGE-NALTSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRN 377 (754)
T ss_pred ---ccccceeccccC-CccccCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCC
Confidence 124555555555 34444443332 45555555555543 244332 235555555555
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.1e-15 Score=119.90 Aligned_cols=212 Identities=19% Similarity=0.110 Sum_probs=150.0
Q ss_pred ccccchhhhhcccccee-eecCcccCCCCCCcCCCCcc---ccccccccCC-C-----CcchhcCCC-cccCeEEEecCc
Q 039403 6 IDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKN---LIFISALHPS-S-----CTPDILGRL-PSVQTLRISGNL 74 (249)
Q Consensus 6 l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~---L~~L~l~~~~-~-----~~~~~l~~l-~~L~~L~l~~~~ 74 (249)
+..++..+..+++|+.| +++| .+....+..+..+.. |++|++.++. . .+...+..+ ++|+.|++++|.
T Consensus 70 ~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 70 LQSLLQGLTKGCGLQELDLSDN-ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHHHHhcCceeEEEccCC-CCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 34566788889999999 8888 776555555555555 9999976665 2 233455677 899999999996
Q ss_pred cccc----cchhhhhcCCCCCcEEEEecCCCceeee-----ecCCCCCCCccEEEEEcccCCCC----CcccccCCCCCc
Q 039403 75 SCYH----SGVSKSLCELHKLECLKLVNESKLSRMV-----LSEYQFPPSLIQLSLSNTELMED----PMPMLERLPRLQ 141 (249)
Q Consensus 75 ~~~~----~~~~~~l~~l~~L~~L~l~~~~~L~~l~-----l~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~ 141 (249)
.. ..++..+..+++|+.|+++++. +..-. ..+.. .++|+.|++++|.+++. ....+..+++|+
T Consensus 149 --l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~ 224 (319)
T cd00116 149 --LEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKA-NCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224 (319)
T ss_pred --CCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHh-CCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence 44 2345567788899999999866 55211 13455 67899999999988643 234567789999
Q ss_pred eEEeeccccCCceeeee--C-CCCCCcccEEEeccCCccc-----ceeccCcccccccceeeccCcCcCC----Cccccc
Q 039403 142 VLKLKRNSYLGRKLACA--G-SGGFPELKVLHLKSMYWLD-----EWTMGAGALPKLESLIVNPCAYLRK----LPEELW 209 (249)
Q Consensus 142 ~L~l~~~~~~~~~~~~~--~-~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~----l~~~l~ 209 (249)
+|++++|.+.+...... . ....+.|+.|++++| .++ .+...+..++.|+.+++++|.+... +.+.+.
T Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~ 303 (319)
T cd00116 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLL 303 (319)
T ss_pred EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHh
Confidence 99999998875321111 0 112479999999995 553 3344455668999999999998753 444555
Q ss_pred cC-cCccEEEccCCc
Q 039403 210 CI-KSLRKLDLHWPQ 223 (249)
Q Consensus 210 ~l-~~L~~l~l~~~~ 223 (249)
.. +.++++++.+++
T Consensus 304 ~~~~~~~~~~~~~~~ 318 (319)
T cd00116 304 EPGNELESLWVKDDS 318 (319)
T ss_pred hcCCchhhcccCCCC
Confidence 55 788999988774
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=116.30 Aligned_cols=197 Identities=20% Similarity=0.144 Sum_probs=105.9
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCc-cc-
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNL-SC- 76 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~-~~- 76 (249)
++++.++++|..+. ++|+.| +..| .+. .+|. .+++|++|++.++. ..+|.. .++|+.|++++|. ..
T Consensus 208 Ls~~~LtsLP~~l~--~~L~~L~L~~N-~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~L 277 (788)
T PRK15387 208 VGESGLTTLPDCLP--AHITTLVIPDN-NLT-SLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHL 277 (788)
T ss_pred cCCCCCCcCCcchh--cCCCEEEccCC-cCC-CCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhh
Confidence 35667788887765 367777 6665 554 3553 24667777744443 444422 2344444444442 00
Q ss_pred ---------------cccchhhhhcCCCCCcEEEEecCCCceeeee----------------cCCCCCCCccEEEEEccc
Q 039403 77 ---------------YHSGVSKSLCELHKLECLKLVNESKLSRMVL----------------SEYQFPPSLIQLSLSNTE 125 (249)
Q Consensus 77 ---------------~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l----------------~~~~~~~~L~~L~l~~~~ 125 (249)
....+|. ..++|+.|+++++. +..++. .++.+..+|+.|++++|.
T Consensus 278 p~lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~-L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~ 353 (788)
T PRK15387 278 PALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQ 353 (788)
T ss_pred hhchhhcCEEECcCCccccccc---cccccceeECCCCc-cccCCCCcccccccccccCccccccccccccceEecCCCc
Confidence 1111221 12456666665543 333211 111201246666666666
Q ss_pred CCCCCccccc-----------------CCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccc
Q 039403 126 LMEDPMPMLE-----------------RLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALP 188 (249)
Q Consensus 126 ~~~~~~~~~~-----------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 188 (249)
++. +|.... ...+|+.|++++|.+.+ . +. ..++|+.|++++ |.++.+|.. ..
T Consensus 354 Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-L-P~----l~s~L~~LdLS~-N~LssIP~l---~~ 422 (788)
T PRK15387 354 LAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-L-PV----LPSELKELMVSG-NRLTSLPML---PS 422 (788)
T ss_pred cCC-CCCCCcccceehhhccccccCcccccccceEEecCCcccC-C-CC----cccCCCEEEccC-CcCCCCCcc---hh
Confidence 552 221110 01245555555555442 1 11 124567777777 556666643 34
Q ss_pred cccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 189 KLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 189 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+|+.|++++|.+. .+|..+..++.|+.+++++|+
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence 6788888888865 688888899999999999996
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-12 Score=117.54 Aligned_cols=197 Identities=17% Similarity=0.201 Sum_probs=129.0
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
|++|+++++|..+. ++|++| +++| .+. .+|..+. .+|+.|++.+++ ..+|..+. .+|+.|++++|. .
T Consensus 206 Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~Lt-sLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~--L- 274 (754)
T PRK15370 206 LDNNELKSLPENLQ--GNIKTLYANSN-QLT-SIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNK--I- 274 (754)
T ss_pred ecCCCCCcCChhhc--cCCCEEECCCC-ccc-cCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCc--c-
Confidence 46788999998775 589999 8877 665 5666543 478888866555 66666553 478888888774 3
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeeec-----------------CC-CCCCCccEEEEEcccCCCCCcccccCCCCC
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVLS-----------------EY-QFPPSLIQLSLSNTELMEDPMPMLERLPRL 140 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~-----------------~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 140 (249)
..+|..+. ++|+.|+++++. ++.++.. ++ ...++|+.|++++|.++ ..|..+ .++|
T Consensus 275 ~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l--~~sL 348 (754)
T PRK15370 275 SCLPENLP--EELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASL--PPEL 348 (754)
T ss_pred CccccccC--CCCcEEECCCCc-cccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhh--cCcc
Confidence 34555442 467777777755 5543321 10 00345777777777665 344443 2578
Q ss_pred ceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCcccc----ccCcCccE
Q 039403 141 QVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEEL----WCIKSLRK 216 (249)
Q Consensus 141 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l----~~l~~L~~ 216 (249)
+.|++++|.+.. . +.. + .++|+.|++++ |.++.+|..+. ..|+.|++++|.+. .+|..+ ..++.+..
T Consensus 349 ~~L~Ls~N~L~~-L-P~~-l--p~~L~~LdLs~-N~Lt~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~ 419 (754)
T PRK15370 349 QVLDVSKNQITV-L-PET-L--PPTITTLDVSR-NALTNLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTR 419 (754)
T ss_pred cEEECCCCCCCc-C-Chh-h--cCCcCEEECCC-CcCCCCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccE
Confidence 888888877653 2 322 2 35788888888 56777776543 36888888888865 455543 34578889
Q ss_pred EEccCCc
Q 039403 217 LDLHWPQ 223 (249)
Q Consensus 217 l~l~~~~ 223 (249)
+++.+|+
T Consensus 420 L~L~~Np 426 (754)
T PRK15370 420 IIVEYNP 426 (754)
T ss_pred EEeeCCC
Confidence 9999997
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-14 Score=124.77 Aligned_cols=195 Identities=24% Similarity=0.239 Sum_probs=139.9
Q ss_pred cccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEE
Q 039403 18 KLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLK 95 (249)
Q Consensus 18 ~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (249)
+|+.+ ++.+ .+. .+|.+++.+.+|+.+.+..+. ..+|..+..+.+|+.+.+.+| ..+.+|+....+++|++|+
T Consensus 242 nl~~~dis~n-~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n---el~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 242 NLQYLDISHN-NLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN---ELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cceeeecchh-hhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh---hhhhCCCcccccceeeeee
Confidence 34444 4444 333 455566666666666633333 555555566666666666666 4455666666788888888
Q ss_pred EecCCCceeeee------------------cCCC-------CCCCccEEEEEcccCCCCCcccccCCCCCceEEeecccc
Q 039403 96 LVNESKLSRMVL------------------SEYQ-------FPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSY 150 (249)
Q Consensus 96 l~~~~~L~~l~l------------------~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 150 (249)
+..+. |..++. .+.. ..+.|+.|++.+|++++...+.+-...+|+.|++++|.+
T Consensus 317 L~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 317 LQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred ehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 88865 544443 1111 033467788888999887778888889999999999987
Q ss_pred CCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 151 LGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 151 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.. ++.+. +..+..|++|++++ |.++.+|..+..++.|++|...+|.+. .+| .+..++.|+.+|++.|.
T Consensus 396 ~~-fpas~-~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 396 NS-FPASK-LRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred cc-CCHHH-HhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccch
Confidence 64 22444 77899999999999 899999999999999999999999865 678 68899999999999996
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=110.12 Aligned_cols=183 Identities=19% Similarity=0.196 Sum_probs=117.7
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC---------------------CCcchh
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS---------------------SCTPDI 58 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---------------------~~~~~~ 58 (249)
+.+|+++++|.. .++|++| +++| .+. .+|.. .++|+.|++.++. ..+|.
T Consensus 229 L~~N~Lt~LP~l---p~~Lk~LdLs~N-~Lt-sLP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~- 299 (788)
T PRK15387 229 IPDNNLTSLPAL---PPELRTLEVSGN-QLT-SLPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV- 299 (788)
T ss_pred ccCCcCCCCCCC---CCCCcEEEecCC-ccC-cccCc---ccccceeeccCCchhhhhhchhhcCEEECcCCccccccc-
Confidence 356788888863 5788888 7777 665 34432 2344444432222 22322
Q ss_pred cCCCcccCeEEEecCcccccc--chhhhhcC----------C----CCCcEEEEecCCCceeeee---------------
Q 039403 59 LGRLPSVQTLRISGNLSCYHS--GVSKSLCE----------L----HKLECLKLVNESKLSRMVL--------------- 107 (249)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~----------l----~~L~~L~l~~~~~L~~l~l--------------- 107 (249)
..++|+.|++++|. ... .+|..+.. + .+|+.|+++++. +..++.
T Consensus 300 --~p~~L~~LdLS~N~--L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~-Ls~LP~lp~~L~~L~Ls~N~L 374 (788)
T PRK15387 300 --LPPGLQELSVSDNQ--LASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRL 374 (788)
T ss_pred --cccccceeECCCCc--cccCCCCcccccccccccCccccccccccccceEecCCCc-cCCCCCCCcccceehhhcccc
Confidence 13578888888875 222 11211111 1 367888887765 554331
Q ss_pred -cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcc
Q 039403 108 -SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGA 186 (249)
Q Consensus 108 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 186 (249)
.+.....+|+.|++++|.++ ..|.. .++|+.|++++|.+.. . +.. ..+|+.|++++ |.++.+|..+..
T Consensus 375 ~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-I-P~l----~~~L~~L~Ls~-NqLt~LP~sl~~ 443 (788)
T PRK15387 375 TSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-L-PML----PSGLLSLSVYR-NQLTRLPESLIH 443 (788)
T ss_pred ccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-C-Ccc----hhhhhhhhhcc-CcccccChHHhh
Confidence 12221346888889888887 34432 3679999999998864 2 322 34688899999 789999999999
Q ss_pred cccccceeeccCcCcCCCcccc
Q 039403 187 LPKLESLIVNPCAYLRKLPEEL 208 (249)
Q Consensus 187 ~~~L~~L~l~~~~~~~~l~~~l 208 (249)
+++|+.|++++|++.+..+..+
T Consensus 444 L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 444 LSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccCCCeEECCCCCCCchHHHHH
Confidence 9999999999999988665544
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5e-13 Score=107.63 Aligned_cols=88 Identities=24% Similarity=0.201 Sum_probs=66.0
Q ss_pred cccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCccccccC
Q 039403 133 MLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLPEELWCI 211 (249)
Q Consensus 133 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~l~~l 211 (249)
.+.++++|+++++++|+++... ..+ |.....++.|.+.. |.+..+.. .+.++..|+.|+|.+|+++.--|..+..+
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~-~~a-Fe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIE-DGA-FEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred HHhhcccceEeccCCCccchhh-hhh-hcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 3677888999999988887654 556 67778888888888 66664443 34477888889998888876666677778
Q ss_pred cCccEEEccCCc
Q 039403 212 KSLRKLDLHWPQ 223 (249)
Q Consensus 212 ~~L~~l~l~~~~ 223 (249)
..|.++++-.|+
T Consensus 346 ~~l~~l~l~~Np 357 (498)
T KOG4237|consen 346 FSLSTLNLLSNP 357 (498)
T ss_pred ceeeeeehccCc
Confidence 888888887664
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-12 Score=109.43 Aligned_cols=206 Identities=17% Similarity=0.181 Sum_probs=159.2
Q ss_pred CCCCCccccchhhhhccccc---ee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcc
Q 039403 1 MPSSYIDQSPEDIWMMQKLM---HL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLS 75 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~---~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~ 75 (249)
|++-+++++|..-.+ ..|. .. ++.| .|. ++|..++.+..|+.+.+..+. ..+|+.+.++..|++++++.|
T Consensus 57 Ls~rrlk~fpr~a~~-~~ltdt~~aDlsrN-R~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-- 131 (722)
T KOG0532|consen 57 LSGRRLKEFPRGAAS-YDLTDTVFADLSRN-RFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-- 131 (722)
T ss_pred cccchhhcCCCcccc-ccccchhhhhcccc-ccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc--
Confidence 345566777765444 3333 23 6666 665 788888888899988866655 778888999999999999988
Q ss_pred ccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCcee
Q 039403 76 CYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKL 155 (249)
Q Consensus 76 ~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 155 (249)
....+|..++.++ |+.|-++.+. +..++..+.. .++|..++.+.|.+. ..|..++.+.+|+.|++..|++.. +
T Consensus 132 -qlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~-~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~--l 204 (722)
T KOG0532|consen 132 -QLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGL-LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED--L 204 (722)
T ss_pred -hhhcCChhhhcCc-ceeEEEecCc-cccCCccccc-chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh--C
Confidence 4455777788777 8888888877 8888777776 889999999999986 788889999999999999888754 3
Q ss_pred eeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCcccc---ccCcCccEEEccCC
Q 039403 156 ACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEEL---WCIKSLRKLDLHWP 222 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l---~~l~~L~~l~l~~~ 222 (249)
+.. +..+ .|..|++++ |.+..+|..+..|..|++|.|.+|++.. -|..| +...-.++|++.-|
T Consensus 205 p~E-l~~L-pLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 205 PEE-LCSL-PLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CHH-HhCC-ceeeeeccc-CceeecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 555 5544 589999997 8999999999999999999999999763 34433 23455678877766
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.6e-12 Score=98.39 Aligned_cols=183 Identities=20% Similarity=0.185 Sum_probs=132.5
Q ss_pred cccccccccCC---CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee--cCCCCCCCc
Q 039403 42 NLIFISALHPS---SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL--SEYQFPPSL 116 (249)
Q Consensus 42 ~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L 116 (249)
.||+|+++..+ ..+...+..|.+|+.|.+.++. ..+.+...+.+-.+|+.++++.+..+.+..+ -+.. |..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~--LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s-cs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR--LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS-CSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc--cCcHHHHHHhccccceeeccccccccchhHHHHHHHh-hhhH
Confidence 58888855544 3455566789999999999997 7788888899999999999998443444333 4566 8899
Q ss_pred cEEEEEcccCCCCCccc-ccC-CCCCceEEeecccc--CCceeeeeCCCCCCcccEEEeccCCccc-ceeccCccccccc
Q 039403 117 IQLSLSNTELMEDPMPM-LER-LPRLQVLKLKRNSY--LGRKLACAGSGGFPELKVLHLKSMYWLD-EWTMGAGALPKLE 191 (249)
Q Consensus 117 ~~L~l~~~~~~~~~~~~-~~~-l~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~ 191 (249)
..|.+++|....+.... +.. -+.+..|+++|+.- ........ ...||+|.+|++++|..++ +...++..++.|+
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-HHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 99999999875422211 111 24788999987532 11111222 4679999999999998888 5666777899999
Q ss_pred ceeeccCcCcCCCcc---ccccCcCccEEEccCCcHHHHHhh
Q 039403 192 SLIVNPCAYLRKLPE---ELWCIKSLRKLDLHWPQTELRQRL 230 (249)
Q Consensus 192 ~L~l~~~~~~~~l~~---~l~~l~~L~~l~l~~~~~~~~~~~ 230 (249)
+|.++.|... .|. .+...|+|.+||+.||..+...++
T Consensus 342 ~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt~mel 381 (419)
T KOG2120|consen 342 HLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDTTMEL 381 (419)
T ss_pred eeehhhhcCC--ChHHeeeeccCcceEEEEeccccCchHHHH
Confidence 9999999732 343 467789999999999975543333
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.2e-10 Score=94.11 Aligned_cols=184 Identities=22% Similarity=0.254 Sum_probs=115.4
Q ss_pred ccccchhhhhcccccee-eecCcccCCCCCCcCCCCc-cccccccccCC-CCcchhcCCCcccCeEEEecCccccccchh
Q 039403 6 IDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLK-NLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVS 82 (249)
Q Consensus 6 l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (249)
+..-+..+..+++++.| +.++ .+. .++...+.+. +|+.|++.++. ..++..++++++|+.|++++| ....++
T Consensus 105 ~~~~~~~~~~~~~l~~L~l~~n-~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N---~l~~l~ 179 (394)
T COG4886 105 LRSNISELLELTNLTSLDLDNN-NIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN---DLSDLP 179 (394)
T ss_pred cccCchhhhcccceeEEecCCc-ccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCc---hhhhhh
Confidence 33344455556667777 5554 443 5666666664 77777755444 556566677778888887777 344455
Q ss_pred hhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCC
Q 039403 83 KSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGG 162 (249)
Q Consensus 83 ~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 162 (249)
...+..++|+.|+++++. ++.++..... +..|+.+.+++|... ..+..+..+.++..+.+.++++... +.. ++.
T Consensus 180 ~~~~~~~~L~~L~ls~N~-i~~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~--~~~-~~~ 253 (394)
T COG4886 180 KLLSNLSNLNNLDLSGNK-ISDLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL--PES-IGN 253 (394)
T ss_pred hhhhhhhhhhheeccCCc-cccCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec--cch-hcc
Confidence 555567777777777766 6665533223 445777777777533 4556666666777776666654331 233 556
Q ss_pred CCcccEEEeccCCcccceeccCcccccccceeeccCcCcC
Q 039403 163 FPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 163 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
++.++.|++++ +.++.++. ++....++.|+++++.++.
T Consensus 254 l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 254 LSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccccceecccc-cccccccc-ccccCccCEEeccCccccc
Confidence 66677777777 66666665 6667777777777776543
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-10 Score=94.51 Aligned_cols=179 Identities=27% Similarity=0.283 Sum_probs=98.9
Q ss_pred CCccccccccccCC-CCcc--hhcCCCcccCeEEEecCccccccc--hhhhhcCCCCCcEEEEecCCCceeeee--cCCC
Q 039403 39 SLKNLIFISALHPS-SCTP--DILGRLPSVQTLRISGNLSCYHSG--VSKSLCELHKLECLKLVNESKLSRMVL--SEYQ 111 (249)
Q Consensus 39 ~l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~ 111 (249)
++.+|+...+-.+. +..+ .....|++++.|++++|- +... +......+++|+.|+++.+. +....- .-..
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL--~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~ 195 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL--FHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLL 195 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhh--HHhHHHHHHHHHhcccchhccccccc-ccCCccccchhh
Confidence 46667766633333 3232 234567777777777773 2222 22445567777777777744 332221 1112
Q ss_pred CCCCccEEEEEcccCCCCCc-ccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc-ceeccCccccc
Q 039403 112 FPPSLIQLSLSNTELMEDPM-PMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD-EWTMGAGALPK 189 (249)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~ 189 (249)
+++++.|.+++|.++.... ..+..+|+++.|.+.+|...... ... ...+..|+.|++++++.+. ......+.++.
T Consensus 196 -l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-~~~-~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 196 -LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK-ATS-TKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred -hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee-cch-hhhhhHHhhccccCCcccccccccccccccc
Confidence 5667777777777664333 33456677777777766421111 122 3345567777777744443 22344566777
Q ss_pred ccceeeccCcCcC-CCccc-----cccCcCccEEEccCCc
Q 039403 190 LESLIVNPCAYLR-KLPEE-----LWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 190 L~~L~l~~~~~~~-~l~~~-----l~~l~~L~~l~l~~~~ 223 (249)
|+.|+++.|.+.. ..|+. .-.+++|++|+++.|+
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 7777777776533 22332 2245677777777775
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-10 Score=89.82 Aligned_cols=179 Identities=21% Similarity=0.149 Sum_probs=129.1
Q ss_pred cchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--------------------------CCcchhcCC
Q 039403 9 SPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--------------------------SCTPDILGR 61 (249)
Q Consensus 9 lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------------------------~~~~~~l~~ 61 (249)
+|=.+..+++|..+ ++.|+. ..+.+-...-+-|+++. .+.. +.+...+..
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~-v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALST--ENIVDIELLKPTLQTIC-VHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred cccchHHhhhhheeeeeccch--hheeceeecCchhheee-eecccccccccccchhhhcCccCCCCCccCCceEEecch
Confidence 45567778888888 777721 22333333345555555 2222 111122233
Q ss_pred CcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCc
Q 039403 62 LPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQ 141 (249)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 141 (249)
...|+++++++| ....+.+++.-.|.++.|+++.++ +..+. .++. +++|+.||+++|.++ ....+-.++.+++
T Consensus 283 Wq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~-L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 283 WQELTELDLSGN---LITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAE-LPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred Hhhhhhcccccc---chhhhhhhhhhccceeEEeccccc-eeeeh-hhhh-cccceEeecccchhH-hhhhhHhhhcCEe
Confidence 467999999999 455667778888999999999988 77666 4666 889999999999887 4556667888999
Q ss_pred eEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccc--eeccCcccccccceeeccCcCcC
Q 039403 142 VLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDE--WTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 142 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
+|.+++|.+.. .+. ++.+-+|..|++++ |.+.. -...++.+|+|+++.+.+|++.+
T Consensus 356 tL~La~N~iE~---LSG-L~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 356 TLKLAQNKIET---LSG-LRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeehhhhhHhh---hhh-hHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99999988754 334 77888999999999 77773 34568899999999999999765
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-11 Score=103.01 Aligned_cols=171 Identities=23% Similarity=0.290 Sum_probs=143.1
Q ss_pred CccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccE
Q 039403 40 LKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQ 118 (249)
Q Consensus 40 l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~ 118 (249)
+.--...++..+. .++|..+..+..|+.+.++.| ....+|..++++..|..++++.+. ++.++..+.. ++ |+.
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n---~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~-lp-Lkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHN---CIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCD-LP-LKV 147 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhc---cceecchhhhhhhHHHHhhhccch-hhcCChhhhc-Cc-cee
Confidence 4444456644444 788888888888888888887 456688899999999999999988 8887776666 65 889
Q ss_pred EEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccC
Q 039403 119 LSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPC 198 (249)
Q Consensus 119 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 198 (249)
+-+++|+++ .+|..++-...|..|+.+.|.+.. ++.. ++.+.+|+.|.+.. |.+..+|.+++.++ |..||+++|
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s--lpsq-l~~l~slr~l~vrR-n~l~~lp~El~~Lp-Li~lDfScN 221 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS--LPSQ-LGYLTSLRDLNVRR-NHLEDLPEELCSLP-LIRLDFSCN 221 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhhh--chHH-hhhHHHHHHHHHhh-hhhhhCCHHHhCCc-eeeeecccC
Confidence 999999987 788888888899999999888754 4677 88899999999999 78888999888555 999999999
Q ss_pred cCcCCCccccccCcCccEEEccCCc
Q 039403 199 AYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 199 ~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
++. .+|..+.++..|++|-+.+||
T Consensus 222 kis-~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 222 KIS-YLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred cee-ecchhhhhhhhheeeeeccCC
Confidence 976 689999999999999999997
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.5e-11 Score=97.12 Aligned_cols=229 Identities=19% Similarity=0.192 Sum_probs=137.7
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCC-CCccccccccccCC---CCcch-hcCCCcccCeEEEecCccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFS-SLKNLIFISALHPS---SCTPD-ILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~---~~~~~-~l~~l~~L~~L~l~~~~~~ 76 (249)
+....++-.....+|++++| +.+|.++++....+++ .+.+|+++++..|. ....+ ....+++|.++++++|...
T Consensus 150 ~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 150 AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh
Confidence 34556666778899999999 8888555443333333 47889999866655 22222 2246889999999988622
Q ss_pred cccchhhhhcCCCCCcEEEEecCCC-----------------------------------------ceeeee--------
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESK-----------------------------------------LSRMVL-------- 107 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~-----------------------------------------L~~l~l-------- 107 (249)
....+......+..++.+...+..+ ++.+..
T Consensus 230 ~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d 309 (483)
T KOG4341|consen 230 SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD 309 (483)
T ss_pred hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch
Confidence 2222222223333333332222000 121111
Q ss_pred ----cCCCCCCCccEEEEEccc-CCCCCcccc-cCCCCCceEEeeccccCC-ceeeeeCCCCCCcccEEEeccCCcccce
Q 039403 108 ----SEYQFPPSLIQLSLSNTE-LMEDPMPML-ERLPRLQVLKLKRNSYLG-RKLACAGSGGFPELKVLHLKSMYWLDEW 180 (249)
Q Consensus 108 ----~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 180 (249)
.+...+++|+.+.++.|+ ++......+ ..++.|+.+++.++.... ..+... ...|+.|+.+.+++|..+++-
T Consensus 310 ~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl-s~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 310 EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL-SRNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh-ccCCchhccCChhhhhhhhhh
Confidence 222226677777777764 333233333 346678888777654322 122333 567899999999988777622
Q ss_pred -----eccCcccccccceeeccCcCcC-CCccccccCcCccEEEccCCcHHHHHhhcc
Q 039403 181 -----TMGAGALPKLESLIVNPCAYLR-KLPEELWCIKSLRKLDLHWPQTELRQRLRT 232 (249)
Q Consensus 181 -----~~~~~~~~~L~~L~l~~~~~~~-~l~~~l~~l~~L~~l~l~~~~~~~~~~~~~ 232 (249)
......+..|+.+.+++|+.+. ..-+.+..++.|+++++-+|...+.+-++.
T Consensus 389 gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 389 GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH
Confidence 2223467789999999998543 444567788999999999998766666665
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-10 Score=89.60 Aligned_cols=185 Identities=16% Similarity=0.110 Sum_probs=87.2
Q ss_pred hhhhhcccccee-eecCcccCCCCCCc----CCCCccccccccccCC-CC-----cc---------hhcCCCcccCeEEE
Q 039403 11 EDIWMMQKLMHL-NFGCITLPAPPKNY----FSSLKNLIFISALHPS-SC-----TP---------DILGRLPSVQTLRI 70 (249)
Q Consensus 11 ~~i~~l~~L~~L-l~~~~~~~~~~~~~----~~~l~~L~~L~l~~~~-~~-----~~---------~~l~~l~~L~~L~l 70 (249)
+.+..+|+|+.| +++| -|....+.. +.++..|++|.+..|. +. +. .-.+.-++|+.+..
T Consensus 86 ~aL~~~~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HHHhcCCceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 345566667777 6666 554333322 3346667777644444 11 11 11223456666666
Q ss_pred ecCc--cccccchhhhhcCCCCCcEEEEecCCCceeeee-----cCCCCCCCccEEEEEcccCCCC----CcccccCCCC
Q 039403 71 SGNL--SCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-----SEYQFPPSLIQLSLSNTELMED----PMPMLERLPR 139 (249)
Q Consensus 71 ~~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~ 139 (249)
++|. ......+...+...+.|+.+.++.++ +..=.. .+.. |++|+.||+..|.++.. +...++.|++
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~-~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEH-CPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHh-CCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 6664 11122233445555666666665533 111110 3444 55666666666655421 2233445555
Q ss_pred CceEEeeccccCCceee----eeCCCCCCcccEEEeccCCccc-----ceeccCcccccccceeeccCcC
Q 039403 140 LQVLKLKRNSYLGRKLA----CAGSGGFPELKVLHLKSMYWLD-----EWTMGAGALPKLESLIVNPCAY 200 (249)
Q Consensus 140 L~~L~l~~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~ 200 (249)
|+.+++++|.+...... +. -...|+|+.+.+.+ |.++ .+...+...+.|..|++++|.+
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al-~~~~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDAL-KESAPSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred heeecccccccccccHHHHHHHH-hccCCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 66666655554332200 01 12345555666555 3333 1222233445555666665554
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-10 Score=92.88 Aligned_cols=87 Identities=25% Similarity=0.201 Sum_probs=52.8
Q ss_pred hhhhhcccccee-eecCcccCCC----CCCcCCCCccccccccccCC-----CCcchhc-------CCCcccCeEEEecC
Q 039403 11 EDIWMMQKLMHL-NFGCITLPAP----PKNYFSSLKNLIFISALHPS-----SCTPDIL-------GRLPSVQTLRISGN 73 (249)
Q Consensus 11 ~~i~~l~~L~~L-l~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~-----~~~~~~l-------~~l~~L~~L~l~~~ 73 (249)
+.+..+..++.+ +++| +|..+ +-+.+.+.+.|+.-++.+.- .++|+.+ ..+++|++++||+|
T Consensus 24 ~~~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 345567778888 8887 77443 33334456666666533322 3344333 35678888888888
Q ss_pred ccccccchh----hhhcCCCCCcEEEEecCC
Q 039403 74 LSCYHSGVS----KSLCELHKLECLKLVNES 100 (249)
Q Consensus 74 ~~~~~~~~~----~~l~~l~~L~~L~l~~~~ 100 (249)
. +....+ ..+++++.|++|.+..++
T Consensus 103 A--~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 103 A--FGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred c--cCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 6 444333 345677888888887743
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-10 Score=92.88 Aligned_cols=197 Identities=17% Similarity=0.137 Sum_probs=125.4
Q ss_pred CCCCCccccch--hhhhcccccee-eecCcccCC--CCCCcCCCCccccccccccCC-CCcc--hhcCCCcccCeEEEec
Q 039403 1 MPSSYIDQSPE--DIWMMQKLMHL-NFGCITLPA--PPKNYFSSLKNLIFISALHPS-SCTP--DILGRLPSVQTLRISG 72 (249)
Q Consensus 1 l~~~~l~~lp~--~i~~l~~L~~L-l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~ 72 (249)
|+++.++..+. ....|++++.| ++.| -|.. .+-.....+++|+.|++..+. .... ..-..+++|+.|.++.
T Consensus 128 Ldn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~ 206 (505)
T KOG3207|consen 128 LDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNS 206 (505)
T ss_pred ecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEecc
Confidence 45677777773 67888888888 8877 5532 222334468888888865554 1111 1112577888888888
Q ss_pred Cccccccc-hhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCC-CCcccccCCCCCceEEeecccc
Q 039403 73 NLSCYHSG-VSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELME-DPMPMLERLPRLQVLKLKRNSY 150 (249)
Q Consensus 73 ~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~ 150 (249)
|. .... +-..+..+|+|++|++.++..+-.-.-.... +..|+.|++++|.+.. .....++.++.|..|+++.+.+
T Consensus 207 CG--ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i-~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 207 CG--LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKI-LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred CC--CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhh-hhHHhhccccCCcccccccccccccccchhhhhccccCc
Confidence 86 5543 3345567888888888886311111113333 5678889998887653 2335667888888888887766
Q ss_pred CCceeeee----CCCCCCcccEEEeccCCcccceec--cCcccccccceeeccCcCcC
Q 039403 151 LGRKLACA----GSGGFPELKVLHLKSMYWLDEWTM--GAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 151 ~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~ 202 (249)
.+--.+.. ....+++|++|++.. |.+.+|+. .+..+++|++|.+..|.++.
T Consensus 284 ~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 284 ASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred chhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhcccccccc
Confidence 43221111 024578899999888 67766654 34466788888888887654
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.9e-10 Score=81.89 Aligned_cols=106 Identities=25% Similarity=0.271 Sum_probs=40.5
Q ss_pred CCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccccee--ccCcccccc
Q 039403 113 PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWT--MGAGALPKL 190 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L 190 (249)
+.+|+.|+++.|.++. ...+..++.|+.|++.+|.++.-. ... ...+++|+.|.+++ |.+.++. ..+..+++|
T Consensus 41 l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~-~~l-~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L 115 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSIS-EGL-DKNLPNLQELYLSN-NKISDLNELEPLSSLPKL 115 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHH-HHH-TT--EEE-TT-S---SCCCCGGGGG-TT-
T ss_pred hcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCccc-cch-HHhCCcCCEEECcC-CcCCChHHhHHHHcCCCc
Confidence 4556666666666642 344555666777777666665421 111 12466777777776 5555332 234467778
Q ss_pred cceeeccCcCcCCC---ccccccCcCccEEEccCCc
Q 039403 191 ESLIVNPCAYLRKL---PEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 191 ~~L~l~~~~~~~~l---~~~l~~l~~L~~l~l~~~~ 223 (249)
+.|++.+|+++..- ...+..+|+|+.||-....
T Consensus 116 ~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 116 RVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp -EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred ceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 88888888765421 1245567888888766553
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-10 Score=93.03 Aligned_cols=193 Identities=21% Similarity=0.204 Sum_probs=130.9
Q ss_pred CCCCCccccchh-hhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchh-cCCC-------------
Q 039403 1 MPSSYIDQSPED-IWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDI-LGRL------------- 62 (249)
Q Consensus 1 l~~~~l~~lp~~-i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~-l~~l------------- 62 (249)
|..|.|+.||+. ++.+++|+.| ++.| .+...-|++|..+..+..|-+.+++ ..+|.. |+++
T Consensus 74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i 152 (498)
T KOG4237|consen 74 LDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHI 152 (498)
T ss_pred eccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhh
Confidence 356889999985 8999999999 8888 8877778888888888887766644 445442 3334
Q ss_pred -----------cccCeEEEecCccccccchhh-hhcCCCCCcEEEEecCCC-----------------------------
Q 039403 63 -----------PSVQTLRISGNLSCYHSGVSK-SLCELHKLECLKLVNESK----------------------------- 101 (249)
Q Consensus 63 -----------~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~----------------------------- 101 (249)
++|..|.+.+|. ...++. .+..+.+++.+.+..+.-
T Consensus 153 ~Cir~~al~dL~~l~lLslyDn~---~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 153 NCIRQDALRDLPSLSLLSLYDNK---IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred cchhHHHHHHhhhcchhcccchh---hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 445555555442 111111 222223333322222110
Q ss_pred ------------------ceeeee---------------cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeecc
Q 039403 102 ------------------LSRMVL---------------SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRN 148 (249)
Q Consensus 102 ------------------L~~l~l---------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 148 (249)
++.+.- .|.. +++|+.+++++|+++..-..++....+++.|.+..|
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~-L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK-LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN 308 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh-cccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence 001100 4667 899999999999999877788999999999999999
Q ss_pred ccCCceeeeeCCCCCCcccEEEeccCCccc-ceeccCcccccccceeeccCcCc
Q 039403 149 SYLGRKLACAGSGGFPELKVLHLKSMYWLD-EWTMGAGALPKLESLIVNPCAYL 201 (249)
Q Consensus 149 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 201 (249)
++..-. ... +..+..|+.|++.+ |.++ -.|-.+.....|.+|++-.|++.
T Consensus 309 ~l~~v~-~~~-f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 309 KLEFVS-SGM-FQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hHHHHH-HHh-hhccccceeeeecC-CeeEEEecccccccceeeeeehccCccc
Confidence 875322 334 77888999999999 7787 44556678889999999888764
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.8e-09 Score=77.33 Aligned_cols=104 Identities=27% Similarity=0.345 Sum_probs=40.9
Q ss_pred CCCccEEEEEcccCCCCCccccc-CCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccC-cccccc
Q 039403 113 PPSLIQLSLSNTELMEDPMPMLE-RLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGA-GALPKL 190 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L 190 (249)
+.+++.|+++++.++. ...++ .+.+|+.|++++|.+..- .. +..++.|++|++++ |.++.+...+ ..+++|
T Consensus 18 ~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l---~~-l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKL---EG-LPGLPRLKTLDLSN-NRISSISEGLDKNLPNL 90 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S-----TT-----TT--EEE--S-S---S-CHHHHHH-TT-
T ss_pred cccccccccccccccc--ccchhhhhcCCCEEECCCCCCccc---cC-ccChhhhhhcccCC-CCCCccccchHHhCCcC
Confidence 5578999999999863 45565 578999999999998752 23 66789999999999 8888886544 368999
Q ss_pred cceeeccCcCcC-CCccccccCcCccEEEccCCc
Q 039403 191 ESLIVNPCAYLR-KLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 191 ~~L~l~~~~~~~-~l~~~l~~l~~L~~l~l~~~~ 223 (249)
++|.+++|.+.. .--..+..+++|+.+++.+||
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 999999999754 112457789999999999998
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.9e-09 Score=88.16 Aligned_cols=165 Identities=25% Similarity=0.290 Sum_probs=125.7
Q ss_pred CCCCCccccchhhhhcc-cccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccc
Q 039403 1 MPSSYIDQSPEDIWMMQ-KLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~-~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
+.++.++++|..+...+ +|+.| +..+ .+. .+|..++.+++|+.|++..+. ..++...+..++|+.++++++ .
T Consensus 123 l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N---~ 197 (394)
T COG4886 123 LDNNNITDIPPLIGLLKSNLKELDLSDN-KIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN---K 197 (394)
T ss_pred cCCcccccCccccccchhhccccccccc-chh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC---c
Confidence 45789999999999995 99999 8888 655 566678999999999966666 788887778999999999999 4
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeee
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLAC 157 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 157 (249)
...+|........|+.+.++++. .......+.. +..+..+.+..+++. ..+..++.+++++.|++.+|.+....
T Consensus 198 i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~-~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~--- 271 (394)
T COG4886 198 ISDLPPEIELLSALEELDLSNNS-IIELLSSLSN-LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSIS--- 271 (394)
T ss_pred cccCchhhhhhhhhhhhhhcCCc-ceecchhhhh-cccccccccCCceee-eccchhccccccceeccccccccccc---
Confidence 55666665566679999998874 3333335556 667777777777765 34677788888999999888876532
Q ss_pred eCCCCCCcccEEEeccCCccc
Q 039403 158 AGSGGFPELKVLHLKSMYWLD 178 (249)
Q Consensus 158 ~~~~~~~~L~~L~l~~~~~~~ 178 (249)
. ++...+++.+++++ +.+.
T Consensus 272 ~-~~~~~~l~~L~~s~-n~~~ 290 (394)
T COG4886 272 S-LGSLTNLRELDLSG-NSLS 290 (394)
T ss_pred c-ccccCccCEEeccC-cccc
Confidence 3 55678888999888 4443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-08 Score=90.03 Aligned_cols=105 Identities=22% Similarity=0.191 Sum_probs=86.3
Q ss_pred ccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc-ceeccCccccccccee
Q 039403 116 LIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD-EWTMGAGALPKLESLI 194 (249)
Q Consensus 116 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ 194 (249)
++.|+++++.+.+..|..++.+++|+.|++++|.+.+.. +.. ++.+++|+.|++++ |.+. .+|..++.+++|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~i-P~~-~~~l~~L~~LdLs~-N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI-PPS-LGSITSLEVLDLSY-NSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcC-ChH-HhCCCCCCEEECCC-CCCCCCCchHHhcCCCCCEEE
Confidence 667888888888888888899999999999999888766 666 78889999999998 4555 7888888999999999
Q ss_pred eccCcCcCCCccccccC-cCccEEEccCCc
Q 039403 195 VNPCAYLRKLPEELWCI-KSLRKLDLHWPQ 223 (249)
Q Consensus 195 l~~~~~~~~l~~~l~~l-~~L~~l~l~~~~ 223 (249)
+++|.+.+.+|..++.. ..+..+++.+|+
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCc
Confidence 99999888888877653 456677777774
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.4e-08 Score=89.07 Aligned_cols=90 Identities=19% Similarity=0.177 Sum_probs=72.9
Q ss_pred ccccchh-hhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchh
Q 039403 6 IDQSPED-IWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVS 82 (249)
Q Consensus 6 l~~lp~~-i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (249)
+..++.. +..+|.|+.| +++| .-.+++|..++.+-+|++|++.+.. ..+|..++++..|.+|++..+. ....++
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~-~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~--~l~~~~ 635 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGN-SSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTG--RLESIP 635 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCC-CccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccc--cccccc
Confidence 5555554 7779999999 8887 5566899999999999999966666 8899999999999999998876 555556
Q ss_pred hhhcCCCCCcEEEEec
Q 039403 83 KSLCELHKLECLKLVN 98 (249)
Q Consensus 83 ~~l~~l~~L~~L~l~~ 98 (249)
.....+++|++|.+..
T Consensus 636 ~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 636 GILLELQSLRVLRLPR 651 (889)
T ss_pred chhhhcccccEEEeec
Confidence 6777789999998877
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-08 Score=79.84 Aligned_cols=125 Identities=22% Similarity=0.199 Sum_probs=61.2
Q ss_pred CCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEE
Q 039403 90 KLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVL 169 (249)
Q Consensus 90 ~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 169 (249)
.|+.++++++. +..++-++.- .|.++.|+++.|.+.. ...+..+++|..|++++|.++.-. .+ -..+.+++.|
T Consensus 285 ~LtelDLS~N~-I~~iDESvKL-~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~~~--Gw-h~KLGNIKtL 357 (490)
T KOG1259|consen 285 ELTELDLSGNL-ITQIDESVKL-APKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLAECV--GW-HLKLGNIKTL 357 (490)
T ss_pred hhhhccccccc-hhhhhhhhhh-ccceeEEeccccceee--ehhhhhcccceEeecccchhHhhh--hh-HhhhcCEeee
Confidence 34445555544 4443333333 5555666666655542 233555556666666655543311 11 1123455556
Q ss_pred EeccCCcccceeccCcccccccceeeccCcCcC-CCccccccCcCccEEEccCCc
Q 039403 170 HLKSMYWLDEWTMGAGALPKLESLIVNPCAYLR-KLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 170 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.+++ |.+.++. .+..+-+|..|++++|++-. +-...++.+|-|+.+.+.+||
T Consensus 358 ~La~-N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 358 KLAQ-NKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ehhh-hhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 5555 3332211 22334456666666666422 112346666666777776666
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.3e-10 Score=87.50 Aligned_cols=179 Identities=19% Similarity=0.173 Sum_probs=118.7
Q ss_pred cccee-eecCcccC-CCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCcccccc-chhhhhcCCCCCc
Q 039403 18 KLMHL-NFGCITLP-APPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCYHS-GVSKSLCELHKLE 92 (249)
Q Consensus 18 ~L~~L-l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~l~~L~ 92 (249)
.|++| ++.. .++ ..+..-+..+.+|+.|.+.+.. +.+...+..-.+|+.++++.+. ++.+ .+.-.+.+|++|.
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-G~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-GFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc-ccchhHHHHHHHhhhhHh
Confidence 35666 5554 332 2233445678899999855555 5677777888899999999886 2222 2334567899999
Q ss_pred EEEEecCCCcee-eeecCCCCCCCccEEEEEcccC--CCCCcc-cccCCCCCceEEeeccccCCceeeeeCCCCCCcccE
Q 039403 93 CLKLVNESKLSR-MVLSEYQFPPSLIQLSLSNTEL--MEDPMP-MLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKV 168 (249)
Q Consensus 93 ~L~l~~~~~L~~-l~l~~~~~~~~L~~L~l~~~~~--~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 168 (249)
.|+++++...+. +...++..-++|+.|.++++.- ...... -..+|+++.+||++++.-........ +..++.|++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~ 342 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQH 342 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHhcchhee
Confidence 999999542111 1112222134788888888742 112222 24789999999999865433333445 678899999
Q ss_pred EEeccCCccc-ceeccCcccccccceeeccCc
Q 039403 169 LHLKSMYWLD-EWTMGAGALPKLESLIVNPCA 199 (249)
Q Consensus 169 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 199 (249)
++++.|..+. +....+...|.|.+|++.+|-
T Consensus 343 lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 343 LSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 9999998776 455567788999999998875
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.7e-08 Score=88.49 Aligned_cols=118 Identities=24% Similarity=0.180 Sum_probs=80.7
Q ss_pred CCCccccchhhhhcccccee-eecCcc-cCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCccccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCIT-LPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++.+..++.. ..+++|++| +..+.. +.......+..++.|+.|++.++. +.+|..++++-+|++|+++++ ..
T Consensus 532 ~~~~~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t---~I 607 (889)
T KOG4658|consen 532 NNKIEHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT---GI 607 (889)
T ss_pred ccchhhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC---Cc
Confidence 3445555555 345578888 776622 332333346679999999976655 789999999999999999987 45
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEccc
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTE 125 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~ 125 (249)
..+|..+.++..|.+|++..++.+..++-.... +.+|++|.+....
T Consensus 608 ~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~-L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 608 SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLE-LQSLRVLRLPRSA 653 (889)
T ss_pred cccchHHHHHHhhheeccccccccccccchhhh-cccccEEEeeccc
Confidence 578899999999999998875433333223334 6677777765543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-07 Score=83.36 Aligned_cols=105 Identities=23% Similarity=0.188 Sum_probs=74.8
Q ss_pred ccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEE
Q 039403 19 LMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLK 95 (249)
Q Consensus 19 L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (249)
++.| +.++ .+.+.+|..++.+++|+.|++.++. +.+|..++.+++|+.|++++|. ..+.+|..++++++|+.|+
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~--lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS--FNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC--CCCCCchHHhcCCCCCEEE
Confidence 6667 7776 7777888888888888888866555 5778788888888888888887 7777888888888888888
Q ss_pred EecCCCcee-eeecCCCCCCCccEEEEEcccCC
Q 039403 96 LVNESKLSR-MVLSEYQFPPSLIQLSLSNTELM 127 (249)
Q Consensus 96 l~~~~~L~~-l~l~~~~~~~~L~~L~l~~~~~~ 127 (249)
++++. +.. ++..+.....++..+++.+|...
T Consensus 497 Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 497 LNGNS-LSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcCCc-ccccCChHHhhccccCceEEecCCccc
Confidence 88865 442 22122221234556777776543
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.2e-07 Score=56.68 Aligned_cols=59 Identities=29% Similarity=0.340 Sum_probs=40.0
Q ss_pred CcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 164 PELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
|+|++|++++ +.++.++. .+..+++|++|++++|.+..--+..+..+++|+++++++|.
T Consensus 1 p~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSN-NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETS-STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCC-CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4577777777 56777764 44567777777777777654333466777777777777764
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.2e-07 Score=54.35 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=4.5
Q ss_pred ccCeEEEecC
Q 039403 64 SVQTLRISGN 73 (249)
Q Consensus 64 ~L~~L~l~~~ 73 (249)
+|++|++++|
T Consensus 2 ~L~~L~l~~n 11 (61)
T PF13855_consen 2 NLESLDLSNN 11 (61)
T ss_dssp TESEEEETSS
T ss_pred cCcEEECCCC
Confidence 3444444444
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.1e-09 Score=92.32 Aligned_cols=124 Identities=26% Similarity=0.234 Sum_probs=85.5
Q ss_pred CcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEE
Q 039403 91 LECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLH 170 (249)
Q Consensus 91 L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 170 (249)
|...+++.+. |..++-++.- ++.++.|+++.|++.. ...+..|++|++||+++|.+..-- ... ...|. |..|.
T Consensus 166 L~~a~fsyN~-L~~mD~SLql-l~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~~vp-~l~-~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 166 LATASFSYNR-LVLMDESLQL-LPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLRHVP-QLS-MVGCK-LQLLN 238 (1096)
T ss_pred Hhhhhcchhh-HHhHHHHHHH-HHHhhhhccchhhhhh--hHHHHhcccccccccccchhcccc-ccc-hhhhh-heeee
Confidence 3333444433 4433334444 7788999999999874 348888999999999998876421 112 33454 89999
Q ss_pred eccCCcccceeccCcccccccceeeccCcCcCCC-ccccccCcCccEEEccCCc
Q 039403 171 LKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKL-PEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 171 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~l~l~~~~ 223 (249)
+++ |.++++.. +.++.+|+.||++.|-+.+.- -..++.+..|..|.+.|||
T Consensus 239 lrn-N~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 239 LRN-NALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ecc-cHHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 998 66665543 557889999999999876521 2346678888999999986
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.6e-08 Score=86.77 Aligned_cols=124 Identities=23% Similarity=0.181 Sum_probs=85.3
Q ss_pred cCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCccc-ccCCCCCceE
Q 039403 65 VQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPM-LERLPRLQVL 143 (249)
Q Consensus 65 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L 143 (249)
|...+.++| ....+..++.-++.++.|+++++. ++.+. .+.. |++|++||+++|.+. ..|.. ...|. |..|
T Consensus 166 L~~a~fsyN---~L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~-l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 166 LATASFSYN---RLVLMDESLQLLPALESLNLSHNK-FTKVD-NLRR-LPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLL 237 (1096)
T ss_pred Hhhhhcchh---hHHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHh-cccccccccccchhc-cccccchhhhh-heee
Confidence 444444444 223344556667889999999977 77666 6666 889999999999886 33322 23343 8999
Q ss_pred EeeccccCCceeeeeCCCCCCcccEEEeccCCccccee--ccCcccccccceeeccCcCc
Q 039403 144 KLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWT--MGAGALPKLESLIVNPCAYL 201 (249)
Q Consensus 144 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~ 201 (249)
.+.+|.++. ... +..+++|..|+++. |-+.+.. ..++.+..|+.|.|.+|++.
T Consensus 238 ~lrnN~l~t---L~g-ie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 238 NLRNNALTT---LRG-IENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eecccHHHh---hhh-HHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999888754 223 66788999999998 5555322 22456778999999999864
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.6e-07 Score=76.19 Aligned_cols=126 Identities=25% Similarity=0.210 Sum_probs=79.0
Q ss_pred cccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcE
Q 039403 16 MQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLEC 93 (249)
Q Consensus 16 l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 93 (249)
+..++.+ +..+ .+. .+-..++.+.+|+.|++.++. ..+...+..+++|++|++++|. . ..+ ..+..++.|+.
T Consensus 71 l~~l~~l~l~~n-~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~--I-~~i-~~l~~l~~L~~ 144 (414)
T KOG0531|consen 71 LTSLKELNLRQN-LIA-KILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK--I-TKL-EGLSTLTLLKE 144 (414)
T ss_pred hHhHHhhccchh-hhh-hhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc--c-ccc-cchhhccchhh
Confidence 3444444 4444 333 234446777888888855444 4444436778888888888884 2 333 23556666888
Q ss_pred EEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCc-ccccCCCCCceEEeeccccC
Q 039403 94 LKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPM-PMLERLPRLQVLKLKRNSYL 151 (249)
Q Consensus 94 L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~ 151 (249)
|++.++. +..+. .+.. ++.|+.+++++|.+..... . ...+.+++.+.+.+|.+.
T Consensus 145 L~l~~N~-i~~~~-~~~~-l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 145 LNLSGNL-ISDIS-GLES-LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred heeccCc-chhcc-CCcc-chhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 8888876 66554 4555 6778888888887763222 1 466677777777776654
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.89 E-value=8e-07 Score=75.70 Aligned_cols=116 Identities=22% Similarity=0.249 Sum_probs=58.0
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCCCCcchhcCCCcccCeEEEecCccccccch
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGV 81 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (249)
.+.++.+-..+..+++++.| +.+| .+. .+...+..+++|++|++..+.-.-...+..++.|+.|++++|. ...+
T Consensus 81 ~n~i~~~~~~l~~~~~l~~l~l~~n-~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~---i~~~ 155 (414)
T KOG0531|consen 81 QNLIAKILNHLSKLKSLEALDLYDN-KIE-KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNL---ISDI 155 (414)
T ss_pred hhhhhhhhcccccccceeeeecccc-chh-hcccchhhhhcchheeccccccccccchhhccchhhheeccCc---chhc
Confidence 34444444446666667776 5555 444 2332255677777777444332222334556667777777764 2222
Q ss_pred hhhhcCCCCCcEEEEecCCCceeeeec-CCCCCCCccEEEEEcccC
Q 039403 82 SKSLCELHKLECLKLVNESKLSRMVLS-EYQFPPSLIQLSLSNTEL 126 (249)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~L~~l~l~-~~~~~~~L~~L~l~~~~~ 126 (249)
..+..+++|+.++++++. +..+... ... +..++.+.+..|.+
T Consensus 156 -~~~~~l~~L~~l~l~~n~-i~~ie~~~~~~-~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 156 -SGLESLKSLKLLDLSYNR-IVDIENDELSE-LISLEELDLGGNSI 198 (414)
T ss_pred -cCCccchhhhcccCCcch-hhhhhhhhhhh-ccchHHHhccCCch
Confidence 223335666666666633 2222211 133 45555555555544
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.7e-07 Score=63.83 Aligned_cols=104 Identities=24% Similarity=0.195 Sum_probs=77.8
Q ss_pred ccEEEEEcccCCC--CCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccce
Q 039403 116 LIQLSLSNTELME--DPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESL 193 (249)
Q Consensus 116 L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 193 (249)
+-.+++++|++.. +.+..+.+...|...++++|.+.+.- ... ...++.++.+++++ |.++++|.++..++.|+.+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp-~kf-t~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFP-KKF-TIKFPTATTLNLAN-NEISDVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCC-HHH-hhccchhhhhhcch-hhhhhchHHHhhhHHhhhc
Confidence 4456777776541 23344566678888899988775421 333 45677899999999 8999999999999999999
Q ss_pred eeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 194 IVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 194 ~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
++++|++.. .|+.+..+.++..|+..++.
T Consensus 106 Nl~~N~l~~-~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 106 NLRFNPLNA-EPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ccccCcccc-chHHHHHHHhHHHhcCCCCc
Confidence 999999764 56666668888888887773
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.9e-06 Score=74.63 Aligned_cols=82 Identities=27% Similarity=0.359 Sum_probs=36.7
Q ss_pred CcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCC-CCcccccCCCCC
Q 039403 62 LPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELME-DPMPMLERLPRL 140 (249)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L 140 (249)
+|.|+.|.+++-. ...+.+.....++++|..||+++++ +..+. .+.. +++|+.|.+.+-.+.. .....+..+++|
T Consensus 147 LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~-GIS~-LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 147 LPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTN-ISNLS-GISR-LKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred CcccceEEecCce-ecchhHHHHhhccCccceeecCCCC-ccCcH-HHhc-cccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 4555555555432 1112233333455555555555544 33332 3344 4455555444444432 233344455555
Q ss_pred ceEEeec
Q 039403 141 QVLKLKR 147 (249)
Q Consensus 141 ~~L~l~~ 147 (249)
+.||++.
T Consensus 223 ~vLDIS~ 229 (699)
T KOG3665|consen 223 RVLDISR 229 (699)
T ss_pred Ceeeccc
Confidence 5555544
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.9e-06 Score=64.90 Aligned_cols=208 Identities=20% Similarity=0.207 Sum_probs=127.5
Q ss_pred cchhhhhcccccee-eecCcccCCCCC----CcCCCCccccccccccCC-----CCcc-------hhcCCCcccCeEEEe
Q 039403 9 SPEDIWMMQKLMHL-NFGCITLPAPPK----NYFSSLKNLIFISALHPS-----SCTP-------DILGRLPSVQTLRIS 71 (249)
Q Consensus 9 lp~~i~~l~~L~~L-l~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~-----~~~~-------~~l~~l~~L~~L~l~ 71 (249)
+-+.+..+..+..+ +++| +|..+-. ..+.+-.+|+..++.+.- .+++ +.+-.||+|+.+++|
T Consensus 22 v~eel~~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LS 100 (388)
T COG5238 22 VVEELEMMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLS 100 (388)
T ss_pred HHHHHHhhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecc
Confidence 34456668888899 9998 8865433 334455667666643322 2333 334578999999999
Q ss_pred cCccccccchh----hhhcCCCCCcEEEEecCCCceee------------ee--cCCCCCCCccEEEEEcccCCCCCcc-
Q 039403 72 GNLSCYHSGVS----KSLCELHKLECLKLVNESKLSRM------------VL--SEYQFPPSLIQLSLSNTELMEDPMP- 132 (249)
Q Consensus 72 ~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~L~~l------------~l--~~~~~~~~L~~L~l~~~~~~~~~~~- 132 (249)
.|. +...+| ..+++-+.|.+|.++.++ +--+ .. ..+. -|.|+.+....|++......
T Consensus 101 DNA--fg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~-kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 101 DNA--FGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAAD-KPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred ccc--cCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhcc-CCCceEEEeccchhccCcHHH
Confidence 997 655555 345678899999999855 2211 11 4455 67788888888877532111
Q ss_pred ---cccCCCCCceEEeeccccCCceee---eeCCCCCCcccEEEeccCCccc-----ceeccCcccccccceeeccCcCc
Q 039403 133 ---MLERLPRLQVLKLKRNSYLGRKLA---CAGSGGFPELKVLHLKSMYWLD-----EWTMGAGALPKLESLIVNPCAYL 201 (249)
Q Consensus 133 ---~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~ 201 (249)
.+..-..|+.+.+..|.+...... ..|...+.+|+.|++.+ |.++ .+...++.++.|+.|.+..|-+.
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 122224778888887777544200 01145677888888888 5554 33445556677888888888754
Q ss_pred C-CCccccc-----cCcCccEEEccCC
Q 039403 202 R-KLPEELW-----CIKSLRKLDLHWP 222 (249)
Q Consensus 202 ~-~l~~~l~-----~l~~L~~l~l~~~ 222 (249)
. ...+.+. ..|+|..|...+|
T Consensus 256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 256 NEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred cccHHHHHHHhhhhcCCCccccccchh
Confidence 3 2222222 2455666666666
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.1e-06 Score=75.12 Aligned_cols=131 Identities=20% Similarity=0.226 Sum_probs=86.5
Q ss_pred cccccee-eecCcccCCCCCCcCCC-CccccccccccCC---CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCC
Q 039403 16 MQKLMHL-NFGCITLPAPPKNYFSS-LKNLIFISALHPS---SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHK 90 (249)
Q Consensus 16 l~~L~~L-l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 90 (249)
-.+|++| +.+...+....+..++. +|+|+.|.+.+-. +++-....++|||..||++++. . ..+ ..++++++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn--I-~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN--I-SNL-SGISRLKN 196 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC--c-cCc-HHHhcccc
Confidence 4578888 77765555555555554 8899999855544 4455566789999999999984 3 333 57888999
Q ss_pred CcEEEEecCCCceeee-e-cCCCCCCCccEEEEEcccCCCCCccc-------ccCCCCCceEEeeccccCCc
Q 039403 91 LECLKLVNESKLSRMV-L-SEYQFPPSLIQLSLSNTELMEDPMPM-------LERLPRLQVLKLKRNSYLGR 153 (249)
Q Consensus 91 L~~L~l~~~~~L~~l~-l-~~~~~~~~L~~L~l~~~~~~~~~~~~-------~~~l~~L~~L~l~~~~~~~~ 153 (249)
|+.|.+..-. ++.-. + .+.+ +++|+.||+|....... +.. -..+|+|+.||.++..+.+.
T Consensus 197 Lq~L~mrnLe-~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 197 LQVLSMRNLE-FESYQDLIDLFN-LKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HHHHhccCCC-CCchhhHHHHhc-ccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 9888887722 22111 1 5566 88999999998765422 111 13467777777776655544
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.1e-05 Score=63.71 Aligned_cols=174 Identities=22% Similarity=0.265 Sum_probs=95.9
Q ss_pred CccccccccccCC----CCcchhcCCCcccCeEEEecCccccccchhhhh-cCCCCCcEEEEecCCCceeeee--cCCCC
Q 039403 40 LKNLIFISALHPS----SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSL-CELHKLECLKLVNESKLSRMVL--SEYQF 112 (249)
Q Consensus 40 l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~L~~l~l--~~~~~ 112 (249)
.+.++.|++.++. +++...+.++|.|+.|+++.|. ....+ ..+ ....+|+.|-+.++. |.+-.. ....
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~--L~s~I-~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~- 144 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS--LSSDI-KSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDD- 144 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc--CCCcc-ccCcccccceEEEEEcCCC-CChhhhhhhhhc-
Confidence 5566666633333 3344455667777777777664 22211 111 245566666666644 333222 4455
Q ss_pred CCCccEEEEEcccCC-----CCCcccc------------------------cCCCCCceEEeeccccCCceeeeeCCCCC
Q 039403 113 PPSLIQLSLSNTELM-----EDPMPML------------------------ERLPRLQVLKLKRNSYLGRKLACAGSGGF 163 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~-----~~~~~~~------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 163 (249)
+|.++.+.++.|.+. ......+ ..++++..+-+..|.+........ +..+
T Consensus 145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~-se~~ 223 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKG-SEPF 223 (418)
T ss_pred chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhccc-CCCC
Confidence 667777777666321 0000000 113455555555554433221222 4556
Q ss_pred CcccEEEeccCCccccee--ccCcccccccceeeccCcCcCCCc----c--ccccCcCccEEEcc
Q 039403 164 PELKVLHLKSMYWLDEWT--MGAGALPKLESLIVNPCAYLRKLP----E--ELWCIKSLRKLDLH 220 (249)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~l~----~--~l~~l~~L~~l~l~ 220 (249)
|.+..|+++. +++.+|. .++..+++|+.|.++++++...+. . -++++++++.|+=+
T Consensus 224 p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 224 PSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred Ccchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 7777778877 6676543 456788999999999999765432 1 25677888877654
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.1e-05 Score=43.57 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=23.3
Q ss_pred cccEEEeccCCcccceeccCcccccccceeeccCcCc
Q 039403 165 ELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYL 201 (249)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 201 (249)
+|++|++++ +.+++++..++.+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSN-NQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccC-CCCcccCchHhCCCCCCEEEecCCCCC
Confidence 566777777 566666666667777777777777654
|
... |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.71 E-value=2.7e-06 Score=66.36 Aligned_cols=189 Identities=14% Similarity=0.052 Sum_probs=95.7
Q ss_pred cchhhhhcccccee-eecCcccCCCCCCc----CCCCccccccccccCC-C-----Ccchhc---------CCCcccCeE
Q 039403 9 SPEDIWMMQKLMHL-NFGCITLPAPPKNY----FSSLKNLIFISALHPS-S-----CTPDIL---------GRLPSVQTL 68 (249)
Q Consensus 9 lp~~i~~l~~L~~L-l~~~~~~~~~~~~~----~~~l~~L~~L~l~~~~-~-----~~~~~l---------~~l~~L~~L 68 (249)
+.+.+.+||+|+.. +++| .|..+.|.. +++-..|.+|.+..+. + .+.+.+ .+-|.|+.+
T Consensus 84 Ll~aLlkcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~v 162 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVV 162 (388)
T ss_pred HHHHHhcCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence 44566778888888 7777 776555533 4566777777743333 1 122222 123567777
Q ss_pred EEecCc--cccccchhhhhcCCCCCcEEEEecCCCceeeee------cCCCCCCCccEEEEEcccCCCC----CcccccC
Q 039403 69 RISGNL--SCYHSGVSKSLCELHKLECLKLVNESKLSRMVL------SEYQFPPSLIQLSLSNTELMED----PMPMLER 136 (249)
Q Consensus 69 ~l~~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l------~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~ 136 (249)
...+|. .+........+....+|+.+.+..++ ++.-.+ .+.- +.+|+.||+..|.++-. +...+..
T Consensus 163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~ 240 (388)
T COG5238 163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCE 240 (388)
T ss_pred EeccchhccCcHHHHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcc
Confidence 777764 11111122334444567777766654 332211 2223 55677777777765422 2233455
Q ss_pred CCCCceEEeeccccCCceeeee----CCCCCCcccEEEeccCCccc-c------eec-cCcccccccceeeccCcCc
Q 039403 137 LPRLQVLKLKRNSYLGRKLACA----GSGGFPELKVLHLKSMYWLD-E------WTM-GAGALPKLESLIVNPCAYL 201 (249)
Q Consensus 137 l~~L~~L~l~~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~-~------~~~-~~~~~~~L~~L~l~~~~~~ 201 (249)
|+.|+.|++.+|-+........ .-..+|+|..|.... +... + ++. .-..+|-|..|.+.+|++.
T Consensus 241 W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Y-ne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 241 WNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDY-NERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cchhhhccccchhhccccHHHHHHHhhhhcCCCccccccch-hhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 6666777766665543321111 011345666666555 2222 1 111 1124566666666666643
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=2.2e-05 Score=62.17 Aligned_cols=110 Identities=27% Similarity=0.295 Sum_probs=67.8
Q ss_pred cCCCCccccccccccCC---CCcchhcC-CCcccCeEEEecCccccccc--hhhhhcCCCCCcEEEEecCCCceeeeecC
Q 039403 36 YFSSLKNLIFISALHPS---SCTPDILG-RLPSVQTLRISGNLSCYHSG--VSKSLCELHKLECLKLVNESKLSRMVLSE 109 (249)
Q Consensus 36 ~~~~l~~L~~L~l~~~~---~~~~~~l~-~l~~L~~L~l~~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~L~~l~l~~ 109 (249)
.++....++-|.+.++. ......++ .++.++.+++.+|. ..+. +...+.++|.|+.|+++.+. |....-..
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~--iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~l 116 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNL--ISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSL 116 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccch--hccHHHHHHHHhcCccceEeeccCCc-CCCccccC
Confidence 34444444455534444 22223333 57899999999996 4432 44567789999999999966 54422122
Q ss_pred -CCCCCCccEEEEEcccCCC-CCcccccCCCCCceEEeeccc
Q 039403 110 -YQFPPSLIQLSLSNTELME-DPMPMLERLPRLQVLKLKRNS 149 (249)
Q Consensus 110 -~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~ 149 (249)
.. ..+|+.+-+.+.++.= ..-..+..+|.++.|.++.|.
T Consensus 117 p~p-~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 117 PLP-LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred ccc-ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 13 4578888888876642 222344566777777777763
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=1.4e-06 Score=71.52 Aligned_cols=181 Identities=20% Similarity=0.090 Sum_probs=88.7
Q ss_pred cccccccccCC----CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCc
Q 039403 42 NLIFISALHPS----SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSL 116 (249)
Q Consensus 42 ~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L 116 (249)
.|+.|.+.++. ..+-....++++++.|.+.+|.......+-..-..+++|+++++.....++...+ .+...|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 66777755555 2233334578888888888775111112223334577788877776222444433 122227788
Q ss_pred cEEEEEccc-CCCCCccc-ccCCCCCceEEeeccccCCc-eeeeeCCCCCCcccEEEeccCCccc--ceeccCccccccc
Q 039403 117 IQLSLSNTE-LMEDPMPM-LERLPRLQVLKLKRNSYLGR-KLACAGSGGFPELKVLHLKSMYWLD--EWTMGAGALPKLE 191 (249)
Q Consensus 117 ~~L~l~~~~-~~~~~~~~-~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~ 191 (249)
+++.+++|. +.+..... ...+..++.+...||.-.+. .+... -+.++.+..+++..|+.++ ++......+..|+
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~-~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKA-AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHH-hccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 888888774 33222222 23344455554444321111 11111 2344455555555655555 2222333555666
Q ss_pred ceeeccCcCcCCCc-ccc-ccCcCccEEEccCCc
Q 039403 192 SLIVNPCAYLRKLP-EEL-WCIKSLRKLDLHWPQ 223 (249)
Q Consensus 192 ~L~l~~~~~~~~l~-~~l-~~l~~L~~l~l~~~~ 223 (249)
.++.++|...++.+ ..+ .++++|+.+.+++|.
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence 66666655322111 112 245666666666664
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.55 E-value=9.6e-05 Score=41.54 Aligned_cols=38 Identities=37% Similarity=0.532 Sum_probs=25.4
Q ss_pred CCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCC
Q 039403 114 PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLG 152 (249)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 152 (249)
++|++|++++|.++ ..+..+++|++|+.|++++|.+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 35777777777776 455557777777787777777653
|
... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00037 Score=52.24 Aligned_cols=105 Identities=27% Similarity=0.274 Sum_probs=73.6
Q ss_pred CCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec--cCccccccc
Q 039403 114 PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM--GAGALPKLE 191 (249)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~ 191 (249)
.....+|++.|.+. ....+..++.|.+|.+..|.++.-. +.. -..+++|+.|.+.+ |++.++.. -+..||.|+
T Consensus 42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~-p~L-~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRID-PDL-DTFLPNLKTLILTN-NSIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccceecccccchh--hcccCCCccccceEEecCCcceeec-cch-hhhccccceEEecC-cchhhhhhcchhccCCccc
Confidence 35667788888664 3466777888888888888876543 333 34567888999988 66664433 244788999
Q ss_pred ceeeccCcCcCC---CccccccCcCccEEEccCCc
Q 039403 192 SLIVNPCAYLRK---LPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 192 ~L~l~~~~~~~~---l~~~l~~l~~L~~l~l~~~~ 223 (249)
.|.+-+|++... -.-.+..+|+|+.+|++.-.
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999999886542 11246678999999998874
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00066 Score=50.92 Aligned_cols=105 Identities=24% Similarity=0.332 Sum_probs=72.7
Q ss_pred cccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCC-CCcccccCCCCCc
Q 039403 63 PSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELME-DPMPMLERLPRLQ 141 (249)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~ 141 (249)
-+...+++++|. ... + ..|..+++|..|.+..+. +.++...+..+++.|+.|.+.+|.+.. .....+..|+.|+
T Consensus 42 d~~d~iDLtdNd--l~~-l-~~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDND--LRK-L-DNLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccceecccccc--hhh-c-ccCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 366778888875 222 2 245567888888888877 777776555546788888888887653 3456677888888
Q ss_pred eEEeeccccCCce--eeeeCCCCCCcccEEEecc
Q 039403 142 VLKLKRNSYLGRK--LACAGSGGFPELKVLHLKS 173 (249)
Q Consensus 142 ~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~ 173 (249)
+|.+-+|...... ..-. +..+|+|+.|++..
T Consensus 117 ~Ltll~Npv~~k~~YR~yv-l~klp~l~~LDF~k 149 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYV-LYKLPSLRTLDFQK 149 (233)
T ss_pred eeeecCCchhcccCceeEE-EEecCcceEeehhh
Confidence 8888888765422 1123 45678888888776
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=5.5e-05 Score=53.18 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=64.7
Q ss_pred CCCCCccccchhhhhcccccee----eecCcccCCCCCCcCC-CCccccccccccCC-CCcchhcCCCcccCeEEEecCc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL----NFGCITLPAPPKNYFS-SLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNL 74 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L----l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~ 74 (249)
|+++.+..+++....+....+| +++| .|. .+|+.+. ..+.++.|++..+. ..+|.++..++.|+.|+++.|
T Consensus 34 Lssc~lm~i~davy~l~~~~el~~i~ls~N-~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N- 110 (177)
T KOG4579|consen 34 LSSCQLMYIADAVYMLSKGYELTKISLSDN-GFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN- 110 (177)
T ss_pred cccchhhHHHHHHHHHhCCceEEEEecccc-hhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-
Confidence 3566666677766555555554 6666 665 3444433 45688889844444 789999999999999999988
Q ss_pred cccccchhhhhcCCCCCcEEEEecCC
Q 039403 75 SCYHSGVSKSLCELHKLECLKLVNES 100 (249)
Q Consensus 75 ~~~~~~~~~~l~~l~~L~~L~l~~~~ 100 (249)
.....|..+..+.++.+|+..++.
T Consensus 111 --~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 111 --PLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred --ccccchHHHHHHHhHHHhcCCCCc
Confidence 445566667667777777776643
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0041 Score=52.39 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=23.2
Q ss_pred hcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecC
Q 039403 15 MMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGN 73 (249)
Q Consensus 15 ~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~ 73 (249)
.++++++| +..| .+. .+|. -..+|+.|.+.+|. ..+|..+ .++|+.|++++|
T Consensus 50 ~~~~l~~L~Is~c-~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDC-DIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCC-CCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 35555555 5544 332 3331 11245555544433 3333322 135555555555
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00038 Score=54.08 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=70.7
Q ss_pred CCCCCCcCCCCccccccccccCCCCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee--
Q 039403 30 PAPPKNYFSSLKNLIFISALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-- 107 (249)
Q Consensus 30 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-- 107 (249)
.+.+..-......|+.|++.++.-.-...+..+++|+.|.++.|.......+......+++|++++++++. ++.+.-
T Consensus 32 ~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~ 110 (260)
T KOG2739|consen 32 AGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLR 110 (260)
T ss_pred CCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccc
Confidence 33444444456677777644444112233456889999999988311455555555667999999999876 554331
Q ss_pred cCCCCCCCccEEEEEcccCCCC---CcccccCCCCCceEEeec
Q 039403 108 SEYQFPPSLIQLSLSNTELMED---PMPMLERLPRLQVLKLKR 147 (249)
Q Consensus 108 ~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~ 147 (249)
.+.. +.+|..|++..|..+.. --..+..+++|++|+-..
T Consensus 111 pl~~-l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 111 PLKE-LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhh-hcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 3444 66788888888866531 112345567788877543
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00052 Score=53.39 Aligned_cols=38 Identities=32% Similarity=0.444 Sum_probs=16.7
Q ss_pred CCCccEEEEEcc--cCCCCCcccccCCCCCceEEeecccc
Q 039403 113 PPSLIQLSLSNT--ELMEDPMPMLERLPRLQVLKLKRNSY 150 (249)
Q Consensus 113 ~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~ 150 (249)
+++|+.|.++.| +....+......+++|+++++++|.+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 445555555555 33323333333344455555544443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.00028 Score=61.13 Aligned_cols=133 Identities=21% Similarity=0.180 Sum_probs=74.8
Q ss_pred CCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecC-CCceeee----ecCCCCCCCccEEEEEccc-CCCCCcccc
Q 039403 61 RLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNE-SKLSRMV----LSEYQFPPSLIQLSLSNTE-LMEDPMPML 134 (249)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~L~~l~----l~~~~~~~~L~~L~l~~~~-~~~~~~~~~ 134 (249)
.+++|+.+.+.++.......+......++.|+.|++++. ....... ..... +++|+.++++++. +++.....+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSI-CRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhh-cCCcCccchhhhhccCchhHHHH
Confidence 467777777777751111124455667777888777651 1000000 02233 6677788887776 554444444
Q ss_pred cC-CCCCceEEeeccc-cCCceeeeeCCCCCCcccEEEeccCCccc--ceeccCcccccccceee
Q 039403 135 ER-LPRLQVLKLKRNS-YLGRKLACAGSGGFPELKVLHLKSMYWLD--EWTMGAGALPKLESLIV 195 (249)
Q Consensus 135 ~~-l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l 195 (249)
.. |++|+.|.+..+. +++..+... ...|+.|++|+++.|..++ .+......+++++.+.+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 33 7788888866665 454443333 4567778888888776664 23333334555444443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0063 Score=51.25 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=66.3
Q ss_pred hhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCC
Q 039403 83 KSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGG 162 (249)
Q Consensus 83 ~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 162 (249)
..+..+.+++.|+++++. +..++ .+.++|+.|.+++|.--...|..+ .++|++|++.+|...... |
T Consensus 46 ~r~~~~~~l~~L~Is~c~-L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-P------ 111 (426)
T PRK15386 46 PQIEEARASGRLYIKDCD-IESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-P------ 111 (426)
T ss_pred HHHHHhcCCCEEEeCCCC-CcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-c------
Confidence 345567899999999876 77654 314479999998875433455444 358999999877322211 2
Q ss_pred CCcccEEEeccCCc---ccceeccCcccccccceeeccCc-Cc-CCCccccccCcCccEEEccCCc
Q 039403 163 FPELKVLHLKSMYW---LDEWTMGAGALPKLESLIVNPCA-YL-RKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 163 ~~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~-~~-~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.|+.|.+.. +. +..+|. +|+.|.+.++. .. ..++.. -.++|++|++++|.
T Consensus 112 -~sLe~L~L~~-n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~ 167 (426)
T PRK15386 112 -ESVRSLEIKG-SATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCS 167 (426)
T ss_pred -cccceEEeCC-CCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCC
Confidence 3466677664 33 334443 35566654322 11 011110 11456666666664
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.00012 Score=57.64 Aligned_cols=111 Identities=23% Similarity=0.260 Sum_probs=67.3
Q ss_pred CccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceecc--Ccccccccc
Q 039403 115 SLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMG--AGALPKLES 192 (249)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~ 192 (249)
+.+.|++.+|.++ +.....+++.|+.|.++-|.++. ... +..|.+|++|.+.. |.|.++... +.++|+|+.
T Consensus 20 ~vkKLNcwg~~L~--DIsic~kMp~lEVLsLSvNkIss---L~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD--DISICEKMPLLEVLSLSVNKISS---LAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HhhhhcccCCCcc--HHHHHHhcccceeEEeecccccc---chh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhh
Confidence 4556666777664 35556677777777777777654 334 56777888887777 555544332 346788888
Q ss_pred eeeccCcCcCCCc-----cccccCcCccEEEccCCc-HHHHHhhcc
Q 039403 193 LIVNPCAYLRKLP-----EELWCIKSLRKLDLHWPQ-TELRQRLRT 232 (249)
Q Consensus 193 L~l~~~~~~~~l~-----~~l~~l~~L~~l~l~~~~-~~~~~~~~~ 232 (249)
|.|..|+-.+.-+ ..+.-+|+|+.||=-.-. ++..+.++.
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~ALr~ 138 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEALRD 138 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHHhc
Confidence 8888877544322 235567777777533322 344444433
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.00062 Score=58.95 Aligned_cols=90 Identities=19% Similarity=0.105 Sum_probs=55.4
Q ss_pred cchhhhhcccccee-eecCcccCCC----CCCcCCCCccccccccccCC---CCcchhc-CCCcccCeEEEecCcccccc
Q 039403 9 SPEDIWMMQKLMHL-NFGCITLPAP----PKNYFSSLKNLIFISALHPS---SCTPDIL-GRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 9 lp~~i~~l~~L~~L-l~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~---~~~~~~l-~~l~~L~~L~l~~~~~~~~~ 79 (249)
+-+....+++|+.| +..+...... .......+.+|+.|++..+. ......+ ..+++|+.|.+.+|......
T Consensus 206 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~ 285 (482)
T KOG1947|consen 206 LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE 285 (482)
T ss_pred HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchh
Confidence 44567888999999 7652011111 11223346888888866655 2222222 34889999997777522224
Q ss_pred chhhhhcCCCCCcEEEEec
Q 039403 80 GVSKSLCELHKLECLKLVN 98 (249)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~ 98 (249)
.+......+++|++|++++
T Consensus 286 gl~~i~~~~~~L~~L~l~~ 304 (482)
T KOG1947|consen 286 GLVSIAERCPSLRELDLSG 304 (482)
T ss_pred HHHHHHHhcCcccEEeeec
Confidence 4555667788999999988
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.0082 Score=28.05 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=9.7
Q ss_pred ccceeeccCcCcCCCcccc
Q 039403 190 LESLIVNPCAYLRKLPEEL 208 (249)
Q Consensus 190 L~~L~l~~~~~~~~l~~~l 208 (249)
|++|++++|.++ .+|+.+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 555666666544 455443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.072 Score=37.17 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=13.1
Q ss_pred CCCCCcccEEEeccCCcccceecc-Ccccccccceeecc
Q 039403 160 SGGFPELKVLHLKSMYWLDEWTMG-AGALPKLESLIVNP 197 (249)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~ 197 (249)
+..+++++.+.+.. + +..+... +..+ .++.+.+..
T Consensus 77 F~~~~~l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 77 FSNCTNLKNIDIPS-N-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-TTECEEEETT-T--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccCc-c-ccEEchhhhcCC-CceEEEECC
Confidence 44455666666543 2 3333332 2233 555555543
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.0019 Score=48.45 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=48.5
Q ss_pred CccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccc-eeccCcccccccce
Q 039403 115 SLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDE-WTMGAGALPKLESL 193 (249)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L 193 (249)
.++.+|.+.+.+..+....+..++.++.|.+..|...+++.....-+..++|+.|++++|..|++ -...+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46667777776665666666777777777776665544331222012356677777777666662 22334455666666
Q ss_pred eeccCc
Q 039403 194 IVNPCA 199 (249)
Q Consensus 194 ~l~~~~ 199 (249)
.+.+-+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 655443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.18 Score=35.15 Aligned_cols=82 Identities=10% Similarity=0.116 Sum_probs=34.0
Q ss_pred cCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCC
Q 039403 59 LGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERL 137 (249)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 137 (249)
|.++.+|+.+.+... ...--...|..+++|+.+.+.. . +..+.- .+.. +++++.+.+.. .........+..+
T Consensus 8 F~~~~~l~~i~~~~~---~~~I~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~-~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 8 FYNCSNLESITFPNT---IKKIGENAFSNCTSLKSINFPN-N-LTSIGDNAFSN-CKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTT-TT--EEEETST-----EE-TTTTTT-TT-SEEEESS-T-TSCE-TTTTTT--TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HhCCCCCCEEEECCC---eeEeChhhcccccccccccccc-c-ccccceeeeec-ccccccccccc-ccccccccccccc
Confidence 445566666666532 2222223455666666666654 2 333332 4445 55666666643 2211122344556
Q ss_pred CCCceEEeec
Q 039403 138 PRLQVLKLKR 147 (249)
Q Consensus 138 ~~L~~L~l~~ 147 (249)
++++.+.+..
T Consensus 81 ~~l~~i~~~~ 90 (129)
T PF13306_consen 81 TNLKNIDIPS 90 (129)
T ss_dssp TTECEEEETT
T ss_pred ccccccccCc
Confidence 6666666643
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.0036 Score=47.08 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=57.9
Q ss_pred CceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccccee--ccCcccccccceeeccCc-CcCCCccccccCcCccE
Q 039403 140 LQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWT--MGAGALPKLESLIVNPCA-YLRKLPEELWCIKSLRK 216 (249)
Q Consensus 140 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~-~~~~l~~~l~~l~~L~~ 216 (249)
++.++-++..+..+. ..- +..++.++.|.+.+|..+.++- ..-+-.++|+.|++++|+ ++..=-..+..+++|+.
T Consensus 103 IeaVDAsds~I~~eG-le~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEG-LEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHH-HHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 556666665555444 334 6788999999999998887332 222256899999999998 55433356778899999
Q ss_pred EEccCCc
Q 039403 217 LDLHWPQ 223 (249)
Q Consensus 217 l~l~~~~ 223 (249)
+.+.+-+
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 9888764
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.0033 Score=49.74 Aligned_cols=80 Identities=21% Similarity=0.133 Sum_probs=62.4
Q ss_pred CCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCcc--ccccCcCc
Q 039403 137 LPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPE--ELWCIKSL 214 (249)
Q Consensus 137 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~l~~l~~L 214 (249)
+.+.++|+..|+.+++ ... +..++.|+.|.++- |.|+.+.. +..|.+|+.|.|..|.+. ++.+ -+.++++|
T Consensus 18 l~~vkKLNcwg~~L~D---Isi-c~kMp~lEVLsLSv-NkIssL~p-l~rCtrLkElYLRkN~I~-sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD---ISI-CEKMPLLEVLSLSV-NKISSLAP-LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccH---HHH-HHhcccceeEEeec-cccccchh-HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchh
Confidence 3467889998888865 334 66789999999998 77776543 568999999999999864 3433 46788999
Q ss_pred cEEEccCCc
Q 039403 215 RKLDLHWPQ 223 (249)
Q Consensus 215 ~~l~l~~~~ 223 (249)
+.|.+..||
T Consensus 91 r~LWL~ENP 99 (388)
T KOG2123|consen 91 RTLWLDENP 99 (388)
T ss_pred hhHhhccCC
Confidence 999999886
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=88.48 E-value=0.46 Score=20.45 Aligned_cols=11 Identities=18% Similarity=0.193 Sum_probs=4.5
Q ss_pred cccceeeccCc
Q 039403 189 KLESLIVNPCA 199 (249)
Q Consensus 189 ~L~~L~l~~~~ 199 (249)
+|+.|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34455555554
|
... |
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=85.00 E-value=0.37 Score=22.69 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=11.8
Q ss_pred CcccCeEEEecCccccccchhhhh
Q 039403 62 LPSVQTLRISGNLSCYHSGVSKSL 85 (249)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~l 85 (249)
+++|+.|++++|. +.......+
T Consensus 1 ~~~L~~L~l~~n~--i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQ--ITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSB--EHHHHHHHH
T ss_pred CCCCCEEEccCCc--CCHHHHHHh
Confidence 4678888888886 544444333
|
... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.60 E-value=0.0036 Score=54.14 Aligned_cols=175 Identities=26% Similarity=0.215 Sum_probs=88.0
Q ss_pred ccccccccCC------CCcchhcCCCcccCeEEEecCccccccchh----hhhcCC-CCCcEEEEecCCCceeeee----
Q 039403 43 LIFISALHPS------SCTPDILGRLPSVQTLRISGNLSCYHSGVS----KSLCEL-HKLECLKLVNESKLSRMVL---- 107 (249)
Q Consensus 43 L~~L~l~~~~------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~l~~l-~~L~~L~l~~~~~L~~l~l---- 107 (249)
+..|.+..+. ..+...+...+.|+.|++++|. ...... ..+... ..+++|++..+. +.....
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~--l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN--LGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLA 165 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC--CccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHH
Confidence 5555544444 2234445566777777777775 332211 122222 234444444422 111111
Q ss_pred -cCCCCCCCccEEEEEcccCCC----CCccccc----CCCCCceEEeeccccCCce---eeeeCCCCCCc-ccEEEeccC
Q 039403 108 -SEYQFPPSLIQLSLSNTELME----DPMPMLE----RLPRLQVLKLKRNSYLGRK---LACAGSGGFPE-LKVLHLKSM 174 (249)
Q Consensus 108 -~~~~~~~~L~~L~l~~~~~~~----~~~~~~~----~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~~-L~~L~l~~~ 174 (249)
.+.. ...++.++++.|.+.. ..+..+. ...++++|++.+|.++... +... +...+. +..+++..
T Consensus 166 ~~L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~-l~~~~~~~~el~l~~- 242 (478)
T KOG4308|consen 166 AVLEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV-LASGESLLRELDLAS- 242 (478)
T ss_pred HHHhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH-HhccchhhHHHHHHh-
Confidence 3333 4566667777776531 1112222 3556777777766654321 0112 223333 55566666
Q ss_pred Cccc-----ceeccCccc-ccccceeeccCcCcC----CCccccccCcCccEEEccCCc
Q 039403 175 YWLD-----EWTMGAGAL-PKLESLIVNPCAYLR----KLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 175 ~~~~-----~~~~~~~~~-~~L~~L~l~~~~~~~----~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.+. .+...+..+ +.+++++++.|.+.. ++++.+..++.++.+.++.|+
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 4444 122233333 567888888888755 345556677788888888885
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=81.40 E-value=1 Score=21.70 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=6.4
Q ss_pred ccccceeeccCc
Q 039403 188 PKLESLIVNPCA 199 (249)
Q Consensus 188 ~~L~~L~l~~~~ 199 (249)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 445555555554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 3e-09
Identities = 45/223 (20%), Positives = 81/223 (36%), Gaps = 44/223 (19%)
Query: 10 PEDIWMMQKLMHLNFGCITLPAPPKNYFSSLKNLIFISALHPSSCTPDILGRLPSVQTLR 69
P+ + + L H+ L PD + + ++TL
Sbjct: 97 PDQAFRLSHLQHMTIDA--------AGLMEL---------------PDTMQQFAGLETLT 133
Query: 70 ISGN-LSCYHSGVSKSLCELHKLECLKLVNESKLSR--------MVLSEYQFPPSLIQLS 120
++ N L + S+ L++L L + +L+ E+Q +L L
Sbjct: 134 LARNPLRA----LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189
Query: 121 LSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLAC--AGSGGFPELKVLHLKSMYWLD 178
L T + P + L L+ LK++ + L+ P+L+ L L+ L
Sbjct: 190 LEWTGIRSLP-ASIANLQNLKSLKIRNS-----PLSALGPAIHHLPKLEELDLRGCTALR 243
Query: 179 EWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHW 221
+ G L+ LI+ C+ L LP ++ + L KLDL
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 7e-09
Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 18/193 (9%)
Query: 37 FSSLKNLIFIS----ALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLE 92
+L +L ++ AL S C S++ L +S N +S + L +L+
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG---AIIMSANFMGLEELQ 402
Query: 93 CLKLVNESKLSRMV-LSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYL 151
L S L R+ S + L+ L +S T D + L L LK+ NS+
Sbjct: 403 HLDF-QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461
Query: 152 GRKLACAGSGGFPELKVLHLKSMYWLDEWTMGA-GALPKLESLIV--NPCAYLRKLPEEL 208
L+ L L L L++ + G L +L+ L + N L L
Sbjct: 462 DNTLSNV-FANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHN---NLLFLDSSH 516
Query: 209 WC-IKSLRKLDLH 220
+ + SL LD
Sbjct: 517 YNQLYSLSTLDCS 529
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 29/146 (19%), Positives = 45/146 (30%), Gaps = 15/146 (10%)
Query: 33 PKNYFSSLKNLIF----ISALHPSSCTPDILGRLPSVQTLRISGN-LSCYHSGVSKSLCE 87
P + SS KN+ + L S +Q L +S + +
Sbjct: 27 PDDIPSSTKNIDLSFNPLKILKSYS-----FSNFSELQWLDLSRCEIETIEDK---AWHG 78
Query: 88 LHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKR 147
LH L L L + + + SL L T+L + +L L+ L +
Sbjct: 79 LHHLSNLIL-TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137
Query: 148 NSYLGRKLACAGSGGFPELKVLHLKS 173
N KL A L + L
Sbjct: 138 NFIHSCKLP-AYFSNLTNLVHVDLSY 162
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 7/144 (4%)
Query: 10 PEDIWMMQKLMHLNFG--CITLPAPPKNYFSSLKNLIF--ISALHPSSCTPDILGRLPSV 65
+ +++L HL+F + + F SL+ L++ IS + I L S+
Sbjct: 392 SANFMGLEELQHLDFQHSTLK-RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450
Query: 66 QTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTE 125
TL+++GN S + +S L L L ++ +L ++ + L L++S+
Sbjct: 451 NTLKMAGN-SFKDNTLSNVFANTTNLTFLDL-SKCQLEQISWGVFDTLHRLQLLNMSHNN 508
Query: 126 LMEDPMPMLERLPRLQVLKLKRNS 149
L+ +L L L N
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNR 532
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-08
Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 18/193 (9%)
Query: 37 FSSLKNLIFIS----ALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLE 92
L +L F+ L C S++ L +S N +S + L +LE
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG---VITMSSNFLGLEQLE 399
Query: 93 CLKLVNESKLSRMV-LSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYL 151
L S L +M S + +LI L +S+T + L L+VLK+ NS
Sbjct: 400 HLDF-QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-F 457
Query: 152 GRKLACAGSGGFPELKVLHLKSMYWLDEWTMGA-GALPKLESLIV--NPCAYLRKLPEEL 208
L L L L++ + A +L L+ L + N L+ +P+ +
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQ---LKSVPDGI 513
Query: 209 WC-IKSLRKLDLH 220
+ + SL+K+ LH
Sbjct: 514 FDRLTSLQKIWLH 526
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 5e-05
Identities = 31/146 (21%), Positives = 45/146 (30%), Gaps = 15/146 (10%)
Query: 33 PKNYFSSLKNLIF----ISALHPSSCTPDILGRLPSVQTLRISGN-LSCYHSGVSKSLCE 87
P N S KNL + L S P +Q L +S + G
Sbjct: 23 PDNLPFSTKNLDLSFNPLRHLGSYS-----FFSFPELQVLDLSRCEIQTIEDGA---YQS 74
Query: 88 LHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKR 147
L L L L + + + L + SL +L T L + L L+ L +
Sbjct: 75 LSHLSTLIL-TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 148 NSYLGRKLACAGSGGFPELKVLHLKS 173
N + L+ L L S
Sbjct: 134 N-LIQSFKLPEYFSNLTNLEHLDLSS 158
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 6e-08
Identities = 44/230 (19%), Positives = 86/230 (37%), Gaps = 24/230 (10%)
Query: 9 SPEDIWMMQKLMHLNFGCITLPAPPKNYFSSLKNLIFIS----ALHPSSCTPDILGRLP- 63
++ L HLN +P N F+ L NL ++S + T + L
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380
Query: 64 -SVQTLRISGN-LSCYHSGVSKSLCELHKLECLKLVNESKLSRMV-LSEYQFPPSLIQLS 120
+ L ++ N +S S + L LE L L +++ + + E++ ++ ++
Sbjct: 381 SPLHILNLTKNKISKIESD---AFSWLGHLEVLDL-GLNEIGQELTGQEWRGLENIFEIY 436
Query: 121 LSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKS--MYWLD 178
LS + ++ +P LQ L L+R + + + L +L L + + ++
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496
Query: 179 EWTMGAGALPKLESL--------IVNPCAYLRKLPEELWCIKSLRKLDLH 220
+ + L KLE L + A L + L L+L
Sbjct: 497 DDML--EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 6e-06
Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 12/209 (5%)
Query: 19 LMHLNFGCITLPAPPKNYFSSLKNLIFI--SALHPSSCTPDILGRLPSVQTLRISGNLSC 76
+ LN L P F+ L + S P++ +LP ++ L + N
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN--- 83
Query: 77 YHSGVS-KSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLE 135
S +S K+ L L L + + ++ + + +LI L LS+ L +
Sbjct: 84 ELSQLSDKTFAFCTNLTELHL-MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142
Query: 136 RLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGA-GALPKLESLI 194
+L LQ L L N K LK L L S + E++ G A+ +L L
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL-SSNQIKEFSPGCFHAIGRLFGLF 201
Query: 195 VNPCAYLRKLPEEL---WCIKSLRKLDLH 220
+N L E+L S+R L L
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLS 230
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 31/193 (16%), Positives = 59/193 (30%), Gaps = 25/193 (12%)
Query: 9 SPEDIWMMQKLMHLNFGC--ITLPAPPKNYFSSLKNLIFIS----ALHPSSCTPDILGRL 62
+ ++ L L + + F L+NL + + ++ D+L L
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI--ANINDDMLEGL 503
Query: 63 PSVQTLRISGN------LSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSL 116
++ L + N G L L L L L + + + ++ L
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL-ESNGFDEIPVEVFKDLFEL 562
Query: 117 IQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHL----- 171
+ L L P + L+ L L++N + F L L +
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPF 621
Query: 172 ----KSMYWLDEW 180
+S+ W W
Sbjct: 622 DCTCESIAWFVNW 634
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 8e-08
Identities = 37/163 (22%), Positives = 57/163 (34%), Gaps = 12/163 (7%)
Query: 14 WMMQKLMHLNFGCITLPAPPKNYFSSLKNLIFIS----ALHPSSCTPDILGRLPSVQTLR 69
++ L L F L +L F+ L C S++ L
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 70 ISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMV-LSEYQFPPSLIQLSLSNTELME 128
+S N +S + L +LE L + S L +M S + +LI L +S+T
Sbjct: 380 LSFNGV---ITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 129 DPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHL 171
+ L L+VLK+ NS+ L L L L
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDL 477
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 33/146 (22%), Positives = 47/146 (32%), Gaps = 15/146 (10%)
Query: 33 PKNYFSSLKNLIF----ISALHPSSCTPDILGRLPSVQTLRISGN-LSCYHSGVSKSLCE 87
P N S KNL + L S P +Q L +S + G +
Sbjct: 23 PDNLPFSTKNLDLSFNPLRHLGSYS-----FFSFPELQVLDLSRCEIQTIEDG---AYQS 74
Query: 88 LHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKR 147
L L L L + + + L + SL +L T L + L L+ L +
Sbjct: 75 LSHLSTLIL-TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 148 NSYLGRKLACAGSGGFPELKVLHLKS 173
N KL L+ L L S
Sbjct: 134 NLIQSFKL-PEYFSNLTNLEHLDLSS 158
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 11/206 (5%)
Query: 18 KLMHLNFGCITLPAPPKNYFSSLKNLIFISALHPSSCTPDILGRLPSVQTLRISGNLSCY 77
HL P SLK L F LPS++ L +S N +
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTF---TSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361
Query: 78 HSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTEL-MEDPMPMLER 136
S+S L+ L L + + + + S + L L ++ L +
Sbjct: 362 KGCCSQSDFGTTSLKYLDL-SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 137 LPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGA-GALPKLESLIV 195
L L L + G L+VL + + + + L L L +
Sbjct: 420 LRNLIYLDISHTH-TRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 196 NPCAYLRKL-PEELWCIKSLRKLDLH 220
+ C L +L P + SL+ L++
Sbjct: 478 SQC-QLEQLSPTAFNSLSSLQVLNMS 502
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-05
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 9/149 (6%)
Query: 6 IDQSPEDIWMMQKLMHLNFG--CITLPAPPKNYFSSLKNLIF--ISALHPSSCTPDILGR 61
+ + +++L HL+F + + + F SL+NLI+ IS H I
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 62 LPSVQTLRISGN-LSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLS 120
L S++ L+++GN + + EL L L L ++ +L ++ + + SL L+
Sbjct: 444 LSSLEVLKMAGNSFQ--ENFLPDIFTELRNLTFLDL-SQCQLEQLSPTAFNSLSSLQVLN 500
Query: 121 LSNTELMEDPMPMLERLPRLQVLKLKRNS 149
+S+ + L LQVL N
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 34/224 (15%), Positives = 55/224 (24%), Gaps = 33/224 (14%)
Query: 23 NFGCITLPAPPKNYFSSLKNLIF----ISALHPS-SCTPDILGRLPSVQTLRISGNLSCY 77
L K+ L NL ++ L D+ L +V + +
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV---- 292
Query: 78 HSGVSKSLCELHKLECLKLVN------------------ESKLSRMVLSEYQFPPSLIQL 119
K + L+LVN + PSL L
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352
Query: 120 SLSNTEL--MEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWL 177
LS L L+ L L N + + G +L+ L +
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLK 409
Query: 178 DEWTMGA-GALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLH 220
+L L L ++ + SL L +
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 40/202 (19%), Positives = 77/202 (38%), Gaps = 31/202 (15%)
Query: 33 PKNYFSSLKNLIF-------ISALHPSSCTPDILGRLPSVQTLRISGN-LSCYHSGVSKS 84
++ F+S +L +SA+ P L +++TL + N L GV
Sbjct: 48 NQDEFASFPHLEELELNENIVSAVEP-----GAFNNLFNLRTLGLRSNRLKLIPLGV--- 99
Query: 85 LCELHKLECLKLVNESKLSRMVLSEYQFP--PSLIQLSLSNTELMEDPMPMLERLPRLQV 142
L L L + +E+K+ +L +Y F +L L + + +L+ L L+
Sbjct: 100 FTGLSNLTKLDI-SENKIV--ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156
Query: 143 LKLKRNSYLGRKLACAGSGGF---PELKVLHLKSMYWLDEWTMGA-GALPKLESLIVNPC 198
L L++ L + L VL L+ + ++ + L +L+ L ++
Sbjct: 157 LTLEKC-----NLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHW 210
Query: 199 AYLRKLPEELWCIKSLRKLDLH 220
YL + +L L +
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSIT 232
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 30/181 (16%), Positives = 55/181 (30%), Gaps = 27/181 (14%)
Query: 16 MQKLMHLNFGCITLPAPPKNYFSSLKNL--IFISALHPSSCTPDILGRLPSVQTLRISGN 73
+ L+ L + + A F L L + IS ++ +L I+
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234
Query: 74 -LSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFP--PSLIQLSLSNTELMEDP 130
L+ + L L L ++ + +S + L ++ L +L
Sbjct: 235 NLTAVPYLAVRHLVYLRFLN----LSYNPIST--IEGSMLHELLRLQEIQLVGGQLAVVE 288
Query: 131 MPMLERLPRLQVLKLKRNSYLGRKLACAGSGGF---PELKVLHLKS--------MYWLDE 179
L L+VL + N +L F L+ L L S + W+
Sbjct: 289 PYAFRGLNYLRVLNVSGN-----QLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFR 343
Query: 180 W 180
Sbjct: 344 R 344
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 35/166 (21%), Positives = 54/166 (32%), Gaps = 23/166 (13%)
Query: 16 MQKLMHLNFGCITLPAPPKNYFSSLKNLIF-------ISALHPSSCTPDILGRLPSVQTL 68
+ L L L P F+ L NL I L + L ++++L
Sbjct: 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD-----YMFQDLYNLKSL 133
Query: 69 RISGN-LSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFP--PSLIQLSLSNTE 125
+ N L L+ LE L L + L+ + LI L L +
Sbjct: 134 EVGDNDLVYISHRA---FSGLNSLEQLTL-EKCNLTS--IPTEALSHLHGLIVLRLRHLN 187
Query: 126 LMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHL 171
+ +RL RL+VL++ YL G L L +
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG--LNLTSLSI 231
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 46/196 (23%), Positives = 72/196 (36%), Gaps = 16/196 (8%)
Query: 33 PKNYFSSLKNLIFIS----ALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCEL 88
P F L L +S L C S++ L +S N +S + L
Sbjct: 44 PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG---VITMSSNFLGL 100
Query: 89 HKLECLKLVNESKLSRMVLSEYQFP--PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLK 146
+LE L S L + + F +LI L +S+T + L L+VLK+
Sbjct: 101 EQLEHLDF-QHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158
Query: 147 RNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGA-GALPKLESLIVNPCAYLRKLP 205
NS+ L + L L L L++ + A +L L+ L ++ L
Sbjct: 159 GNSFQENFLPDIFT-ELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNN-FFSLD 215
Query: 206 EE-LWCIKSLRKLDLH 220
C+ SL+ LD
Sbjct: 216 TFPYKCLNSLQVLDYS 231
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 8/122 (6%)
Query: 32 PPKNYFSSLKNLIF--ISALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELH 89
+ F SL+NLI+ IS H I L S++ L+++GN S + + EL
Sbjct: 117 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELR 175
Query: 90 KLECLKLVNESKLSRMVLSEYQFP--PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKR 147
L L L +L + LS F SL L++S+ + L LQVL
Sbjct: 176 NLTFLDLSQ-CQLEQ--LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232
Query: 148 NS 149
N
Sbjct: 233 NH 234
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
Query: 112 FPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHL 171
P S +L L + +L P + ++L +L L L N + G LK L L
Sbjct: 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85
Query: 172 KSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEE--LWCIKSLRKLDLHW 221
S + + L +LE L L+++ E +++L LD+
Sbjct: 86 -SFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISH 135
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 5e-07
Identities = 32/182 (17%), Positives = 53/182 (29%), Gaps = 13/182 (7%)
Query: 49 LHPSSCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLS 108
L + PD+ GRL S + S +++ ++ + L N +
Sbjct: 54 LTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHG 112
Query: 109 EYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKV 168
L LSL L + + L + L L L S L
Sbjct: 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172
Query: 169 LHLKSMYWLDEWTMG---AGALPKLESLIVNPC------AYLRKLPEELWCIKSLRKLDL 219
L+L + E + A + L ++ + L L +L LDL
Sbjct: 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC---PNLVHLDL 229
Query: 220 HW 221
Sbjct: 230 SD 231
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 7e-07
Identities = 42/224 (18%), Positives = 72/224 (32%), Gaps = 15/224 (6%)
Query: 6 IDQSPEDIWMMQKLMHLNFG--CITLPAPPKNYFSSLKNLIFISALH-----PSSCTPDI 58
I + LNFG L S++++L + S +
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250
Query: 59 LGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQ 118
L + SV+++ + + + + S + L+ L L + LS + S +L +
Sbjct: 251 LCEM-SVESINLQKHY--FFNISSNTFHCFSGLQELDLTA-THLSE-LPSGLVGLSTLKK 305
Query: 119 LSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKS--MYW 176
L LS + P L L +K N+ L+ L L +
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC-LENLENLRELDLSHDDIET 364
Query: 177 LDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLH 220
D + L L+SL ++ L E L LDL
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 43/197 (21%), Positives = 71/197 (36%), Gaps = 18/197 (9%)
Query: 33 PKNYFSSLKNLIFIS----ALHPSSCTPDILGRLPSVQTLRISGN-LSCYHSGVSKSLCE 87
+L+NL + + S C L L +Q+L +S N + + E
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE---AFKE 398
Query: 88 LHKLECLKLVNESKLSRM-VLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLK 146
+LE L L ++L S +Q L L+LS++ L + + LP LQ L L+
Sbjct: 399 CPQLELLDL-AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457
Query: 147 RNSYLGRKLACAGS-GGFPELKVLHLKSMYWLDEWTMGA-GALPKLESLIV--NPCAYLR 202
N + + S L++L L L A +L + + + N L
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHNR---LT 513
Query: 203 KLPEELWCIKSLRKLDL 219
E L+L
Sbjct: 514 SSSIEALSHLKGIYLNL 530
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 36/202 (17%), Positives = 66/202 (32%), Gaps = 28/202 (13%)
Query: 33 PKNYFSSLKNLIF-------ISALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGVS-KS 84
FS L NL F I +H D + TL ++ N ++ +
Sbjct: 49 QNTTFSRLINLTFLDLTRCQIYWIHE-----DTFQSQHRLDTLVLTANP---LIFMAETA 100
Query: 85 LCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLK 144
L L+ L ++ +S + +L L L + + +P +L+VL
Sbjct: 101 LSGPKALKHLFF-IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159
Query: 145 LKRNSYLGRKLACAGSGGFPELKVLHLK----SMYWLDEWTMGAGALPKLESLIVNPCAY 200
+ N+ + L+ + L L + ++ GA +SL
Sbjct: 160 FQNNA-I-HYLSKEDMSSLQQATNLSLNLNGNDIAGIEP---GAFDSAVFQSLNFGGTQN 214
Query: 201 LRKLPEELW--CIKSLRKLDLH 220
L + + L I+SL
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFE 236
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 43/199 (21%), Positives = 71/199 (35%), Gaps = 34/199 (17%)
Query: 37 FSSLKNLIF-------ISALHPSSCTPDILGRLPSVQTLRISGN-LSCYHSGVSKSLCEL 88
F+ L NL ++ + L ++ L + N + S + +
Sbjct: 108 FNGLANLNTLELFDNRLTTIPN-----GAFVYLSKLKELWLRNNPIESIPSY---AFNRI 159
Query: 89 HKLECLKLVNESKLSRMVLSEYQFP--PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLK 146
L L L +LS +SE F +L L+L+ L E +P L L +L L L
Sbjct: 160 PSLRRLDLGELKRLSY--ISEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLS 215
Query: 147 RNSYLGRKLACAGSGGF---PELKVLHLKSMYWLDEWTMGA-GALPKLESLIVNPCAYLR 202
N L+ G F L+ L + + A L L + + L
Sbjct: 216 GN-----HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNN-LT 268
Query: 203 KLPEELWC-IKSLRKLDLH 220
LP +L+ + L ++ LH
Sbjct: 269 LLPHDLFTPLHHLERIHLH 287
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 39/195 (20%), Positives = 61/195 (31%), Gaps = 27/195 (13%)
Query: 33 PKNYFSSLKNLIFISALH---PSSCTPDILGRLPSVQTLRISGN-LSCYHSGVSKSLCEL 88
+ FS L++L F+ + L S+ L++ N +G L L
Sbjct: 46 NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105
Query: 89 HKLECLKLVNESKLSRMVLSEYQFPP--SLIQLSLSNTELME-DPMPMLERLPRLQVLKL 145
L + + L VLS F P SL L L + + + P + R VL L
Sbjct: 106 EVL----TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161
Query: 146 KRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLP 205
N K+ + H L ++ + + L C K
Sbjct: 162 TFN-----KVKSICEEDLLNFQGKHFT---LLRLSSITLQDMNEYW-LGWEKCGNPFKN- 211
Query: 206 EELWCIKSLRKLDLH 220
S+ LDL
Sbjct: 212 ------TSITTLDLS 220
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 23/158 (14%), Positives = 44/158 (27%), Gaps = 29/158 (18%)
Query: 6 IDQSPEDIWMM---QKLMHLNFGCITLPAPPKNYFSSLKNLIFISALHPSSCTPDILGRL 62
+ E+ + + L ITL + + K +
Sbjct: 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF--------------KN 211
Query: 63 PSVQTLRISGN-LSCYHSGVSKSLCELHKLECLKLVNESKLSRMV-------LSEYQF-- 112
S+ TL +SGN + K++ L L N + + F
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
Query: 113 --PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRN 148
+ LS +++ + L+ L L +N
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 35/197 (17%), Positives = 69/197 (35%), Gaps = 50/197 (25%)
Query: 33 PKNYFSSLKNLIF----ISALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGV--SKSLC 86
P+ +L+ L I+ + + L + + + N S + +
Sbjct: 116 PEKMPKTLQELRVHENEITKVRK-----SVFNGLNQMIVVELGTN--PLKSSGIENGAFQ 168
Query: 87 ELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLK 146
+ KL +++ ++ ++ + PPSL +L L ++ + L+ L L L L
Sbjct: 169 GMKKLSYIRI-ADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 147 RNSYLGRKLACAGSGGF---PELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRK 203
N ++ +G P L+ LHL + N L K
Sbjct: 225 FN-----SISAVDNGSLANTPHLRELHLNN----------------------NK---LVK 254
Query: 204 LPEELWCIKSLRKLDLH 220
+P L K ++ + LH
Sbjct: 255 VPGGLADHKYIQVVYLH 271
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 31/195 (15%)
Query: 16 MQKLMHLNFG--CITLPAPPKNYFSSLKNLIF-------ISALHPSSCTPDILGRLPSVQ 66
+ +++ + G + F +K L + I+ + PS+
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--------PPSLT 195
Query: 67 TLRISGN-LSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTE 125
L + GN ++ + SL L+ L L L + + +S + P L +L L+N +
Sbjct: 196 ELHLDGNKITKVDAA---SLKGLNNLAKLGL-SFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 126 LMEDPMPMLERLPRLQVLKLKRN--SYLGRKLACAGSG--GFPELKVLHLKSMYWLDEWT 181
L++ P L +QV+ L N S +G C + L S + W
Sbjct: 252 LVKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWE 309
Query: 182 MGAGA---LPKLESL 193
+ + ++
Sbjct: 310 IQPSTFRCVYVRAAV 324
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 42/195 (21%), Positives = 72/195 (36%), Gaps = 47/195 (24%)
Query: 33 PKNYFSSLKNLIF----ISALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCEL 88
P N SSL L I + L ++ + + GN +SG +
Sbjct: 118 PPNLPSSLVELRIHDNRIRKVPKGV-----FSGLRNMNCIEMGGN-PLENSGFEPGAFDG 171
Query: 89 HKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRN 148
KL L++ +E+KL+ + P +L +L L + ++ + L R +L L L N
Sbjct: 172 LKLNYLRI-SEAKLTGI---PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227
Query: 149 SYLGRKLACAGSGGF---PELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLP 205
++ +G P L+ LHL + N L ++P
Sbjct: 228 -----QIRMIENGSLSFLPTLRELHLDN----------------------NK---LSRVP 257
Query: 206 EELWCIKSLRKLDLH 220
L +K L+ + LH
Sbjct: 258 AGLPDLKLLQVVYLH 272
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 37/228 (16%), Positives = 79/228 (34%), Gaps = 27/228 (11%)
Query: 16 MQKLMHLNFGCITLPAPPKNYFSSLKNLIFISALHPSSCT---------PDILGRLPSVQ 66
+ + +L L + + + L +L + +
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254
Query: 67 TLRISGN----LSCYHSGVSKSLCELHKLECLKL----VNESKLSRMVLSEYQFPPSLIQ 118
+ L ++ S + EL K+E + + + + L + + Y + +
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314
Query: 119 LSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLA-CAGSGGFPELKVLHL-----K 172
+++ N+++ P + L L+ L L N + L A G +P L+ L L +
Sbjct: 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374
Query: 173 SMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLH 220
SM E + L L SL ++ +P+ + +R L+L
Sbjct: 375 SMQKTGEILLT---LKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLS 418
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 32/235 (13%), Positives = 81/235 (34%), Gaps = 24/235 (10%)
Query: 9 SPEDIWMMQKLMHLNFGCITLPAPPKNYFSSLKNL-------IFISALHPSSCTPDILGR 61
+ + ++ + HL + + L ++ ++ S D +
Sbjct: 164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223
Query: 62 LPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFP-------- 113
R S + + K L + +L ++ + + + +
Sbjct: 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283
Query: 114 --PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHL 171
++ +L + L D + L +++ + ++ + + C+ S L+ L L
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV--FLVPCSFSQHLKSLEFLDL 341
Query: 172 ---KSMYWLDEWTMGAGALPKLESLIV--NPCAYLRKLPEELWCIKSLRKLDLHW 221
+ + + GA P L++L++ N ++K E L +K+L LD+
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 33/195 (16%), Positives = 68/195 (34%), Gaps = 18/195 (9%)
Query: 33 PKNYFSSLKNLI----FISALHPSSCTPDILGRLPSVQTLRISGN-LSCYHSGVSKSLCE 87
P +++K+L I+ + L ++Q L + + ++
Sbjct: 21 PSGLTAAMKSLDLSFNKITYIGHGD-----LRACANLQVLILKSSRINTIEGDA---FYS 72
Query: 88 LHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMP-MLERLPRLQVLKLK 146
L LE L L +++ LS + S + SL L+L + + L LQ L++
Sbjct: 73 LGSLEHLDL-SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131
Query: 147 RNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGA-GALPKLESLIVNPCAYLRKLP 205
++ G L L + L + + ++ + L ++ L
Sbjct: 132 NVETF-SEIRRIDFAGLTSLNELEI-KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189
Query: 206 EELWCIKSLRKLDLH 220
+ S+R L+L
Sbjct: 190 IFADILSSVRYLELR 204
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 44/217 (20%), Positives = 86/217 (39%), Gaps = 32/217 (14%)
Query: 16 MQKLMHLNFGCITLPAPPKNYFSSLKNLIF-------ISALHPSSCTPDILGRLPSVQTL 68
++K+ + + P ++ LK+L F + + + G PS+QTL
Sbjct: 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC--KGAWPSLQTL 366
Query: 69 RISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELME 128
+S N + L L L L + + + M Q+P + L+LS+T +
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDI-SRNTFHPM-PDSCQWPEKMRFLNLSSTGIRV 424
Query: 129 DPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKS--MYWLDEWTMGAGA 186
L+VL + N+ + S P L+ L++ + L + ++
Sbjct: 425 VKT---CIPQTLEVLDVSNNN------LDSFSLFLPRLQELYISRNKLKTLPDASL---- 471
Query: 187 LPKLESLIV--NPCAYLRKLPEELWCI-KSLRKLDLH 220
P L + + N L+ +P+ ++ SL+K+ LH
Sbjct: 472 FPVLLVMKISRN---QLKSVPDGIFDRLTSLQKIWLH 505
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 28/236 (11%), Positives = 66/236 (27%), Gaps = 32/236 (13%)
Query: 9 SPEDIWMMQKLMHLNFGCITLPAPPKNYFSSLKNLIF-------ISALHPSSCTPDILGR 61
KL LN + P N+ + + + +
Sbjct: 345 KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD----AKS 400
Query: 62 LPSVQTLRISGN-----LSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSL 116
+ + + S N + + + + + L + +++S+ + L
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL-SNNQISKFPKELFSTGSPL 459
Query: 117 IQLSLSN-------TELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVL 169
++L ++D + L + L+ N L + + P L +
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGI 518
Query: 170 HLKSMYWLDEWTMGAGALPKLESLIVNPCAYL------RKLPEELWCIKSLRKLDL 219
L S ++ L+ + R+ PE + SL +L +
Sbjct: 519 DL-SYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 22/192 (11%), Positives = 56/192 (29%), Gaps = 35/192 (18%)
Query: 56 PDILGRLPSVQTLRISGN--LSCYHSGVSKSLCELHKLECLKLV---------------N 98
PD +G+L ++ L + + K + E + + +
Sbjct: 98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED 157
Query: 99 ESKLSRMVLSEYQFP----------PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRN 148
S L + ++ Q+ + + + RL +L+ + +
Sbjct: 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS-KAVMRLTKLRQFYMGNS 216
Query: 149 SYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEEL 208
++ + + + + L L + V C L KLP L
Sbjct: 217 PFVA-------ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269
Query: 209 WCIKSLRKLDLH 220
+ ++ +++
Sbjct: 270 KALPEMQLINVA 281
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-06
Identities = 35/198 (17%), Positives = 70/198 (35%), Gaps = 16/198 (8%)
Query: 33 PKNYFSSLKNLIF----ISALHPSSCTPDILGRLPSVQTLRISGN--LSCYHSGVSKSLC 86
P + + L F + + + ++ + IS N L + V +L
Sbjct: 25 PSDLPRNAIELRFVLTKLRVIQKGA-----FSGFGDLEKIEISQNDVLEVIEADVFSNLP 79
Query: 87 ELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLK 146
+LH++ K N ++ P+L L +SNT + P + +L ++
Sbjct: 80 KLHEIRIEKANNLLYINPEAFQNL---PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136
Query: 147 RNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPE 206
N + + G E +L L + + E A +L+ L ++ L +LP
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWL-NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195
Query: 207 E-LWCIKSLRKLDLHWPQ 223
+ LD+ +
Sbjct: 196 DVFHGASGPVILDISRTR 213
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 31/161 (19%), Positives = 51/161 (31%), Gaps = 16/161 (9%)
Query: 16 MQKLMHLNFGCITLPAPPKNYFSSLKNL--IFISALHPSSCTPDILGRLPSVQTLRISGN 73
+ + F T+ P S + + + ++ L ++Q L + N
Sbjct: 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103
Query: 74 -LSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFP--PSLIQLSLSNTELMEDP 130
+ V + L L L + LS L F P L LS+SN L
Sbjct: 104 AIRYLPPHV---FQNVPLLTVLVL-ERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIE 157
Query: 131 MPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHL 171
+ LQ L+L N +L P L ++
Sbjct: 158 DDTFQATTSLQNLQLSSN-----RLTHVDLSLIPSLFHANV 193
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 24/187 (12%)
Query: 37 FSSLKNLIFISALHPSSCTPDILGRLPSVQTLRISGN-LSCYHSGVSKSLCELHKLECLK 95
S + +L + S L +V+ L S N ++ V+ L L L+
Sbjct: 182 LSLIPSL---FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK-LQHNN 237
Query: 96 LVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRN--SYLGR 153
L + + L P L+++ LS EL + ++ RL+ L + N L
Sbjct: 238 LTDTAWLLNY--------PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 289
Query: 154 KLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKS 213
P LKVL L S L +LE+L ++ + + L +
Sbjct: 290 YGQ-----PIPTLKVLDL-SHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTH--HT 340
Query: 214 LRKLDLH 220
L+ L L
Sbjct: 341 LKNLTLS 347
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-05
Identities = 32/207 (15%), Positives = 61/207 (29%), Gaps = 32/207 (15%)
Query: 33 PKNYFSSLKNLIF-------ISALHPSSCTPDILGRLPSVQTLRISGN-LSC-YHSGVSK 83
++ FSSL +L +S L L S+ L + GN + +
Sbjct: 92 EEDSFSSLGSLEHLDLSYNYLSNLSS-----SWFKPLSSLTFLNLLGNPYKTLGETSLFS 146
Query: 84 SLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVL 143
L +L L + +K+ R + L +L + ++L L+ + + L
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFA---GLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203
Query: 144 KLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRK 203
L + + + D T L E+ + R
Sbjct: 204 ILHMK-----QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258
Query: 204 L----------PEELWCIKSLRKLDLH 220
+ + L I L +L+
Sbjct: 259 VKITDESLFQVMKLLNQISGLLELEFS 285
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 9e-04
Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 10/141 (7%)
Query: 16 MQKLMHLNFGCITLPAPPKNYFSSLKNLIF--ISALHPSSCTPDILGRLPSVQTLRISGN 73
+ L L L + S++N+ + + SV+ L +
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232
Query: 74 ------LSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELM 127
S +G + SL + +K+ +ES V+ L++L S +L
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLELEFSRNQLK 290
Query: 128 EDPMPMLERLPRLQVLKLKRN 148
P + +RL LQ + L N
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTN 311
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 3e-05
Identities = 25/209 (11%), Positives = 65/209 (31%), Gaps = 28/209 (13%)
Query: 33 PKNYFSSLKNLIFISALH------PSSCTPDILGRLPSVQTLRISGN-LSCYHSGVSKSL 85
P+++ + + + H P+ + + ++ S N + +S S+
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKYIPNIFN---AKSVYVMGSVDFSYNKIGSEGRNISCSM 667
Query: 86 --CELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSN-------TELMEDPMPMLER 136
+ + L + +++ + + + + LSN ++ +
Sbjct: 668 DDYKGINASTVTL-SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726
Query: 137 LPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESL--- 193
L + L+ N L + P L + + S + +L++
Sbjct: 727 TYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDV-SYNCFSSFPTQPLNSSQLKAFGIR 784
Query: 194 ---IVNPCAYLRKLPEELWCIKSLRKLDL 219
LR+ P + SL +L +
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQI 813
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 1e-04
Identities = 28/234 (11%), Positives = 64/234 (27%), Gaps = 36/234 (15%)
Query: 9 SPEDIWMMQKLMHLNFGCITLPAPPKNYFSSLKNLIF-------ISALHPSSCTPDILGR 61
+ + M KL L+ + F + L I +
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVRHLEA--FGTNVKLTDLKLDYNQIEEIPED-----FCAF 617
Query: 62 LPSVQTLRISGN-LSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPP-----S 115
V+ L S N L + + ++ + + + +K+ + +
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFN--AKSVYVMGSVDF-SYNKIGSEGRNISCSMDDYKGIN 674
Query: 116 LIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMY 175
++LS E+ + P + + + L N + + K + +
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYK--NTYLLT 731
Query: 176 WLD---------EWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLH 220
+D A LP L ++ V+ P + L+ +
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIR 784
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 23/214 (10%), Positives = 60/214 (28%), Gaps = 33/214 (15%)
Query: 10 PEDIWMMQKLMHLNFGC--ITLPAPPKNYFSSLKNLIFISALH-PSSCTPDILGRLPSVQ 66
P+ I + +L L+FG T+ ++ L +
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399
Query: 67 TLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTEL 126
+ + + + + K + L Q+ +
Sbjct: 400 LSDLLQDAINRNP----EMKPIKKDSRISL------------------KDTQIGNLTNRI 437
Query: 127 MEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGA 186
++RL +LQ++ + + + + + +
Sbjct: 438 TFIS-KAIQRLTKLQIIYFANS-----PFT--YDNIAVDWEDANSDYAKQYENEELSWSN 489
Query: 187 LPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLH 220
L L + + C + +LP+ L+ + L+ L++
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 3e-04
Identities = 30/192 (15%), Positives = 55/192 (28%), Gaps = 30/192 (15%)
Query: 32 PPKNYFSSLKNLIFISALHPSSCTPDILGRLPSVQTLRISGN-LSCYHSGVSKSLCELHK 90
K+ SLK+ + + + + RL +Q + + + + + V
Sbjct: 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY 476
Query: 91 LECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSY 150
+ + S S + L + L N M L LP LQ L + N
Sbjct: 477 AKQYENEELS-WSNL--------KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527
Query: 151 LGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEE--L 208
+ A + + PK++ + L + P L
Sbjct: 528 ISAAQLKADWTRLADDE-----------------DTGPKIQIFYMGYNN-LEEFPASASL 569
Query: 209 WCIKSLRKLDLH 220
+ L LD
Sbjct: 570 QKMVKLGLLDCV 581
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 6e-05
Identities = 48/299 (16%), Positives = 96/299 (32%), Gaps = 77/299 (25%)
Query: 12 DIWMMQKLMHLNFGCITL----PAPPKNYFSSLKNLIFISALHPSSCTPD----ILGR-- 61
++ + N C L ++ S+ H + TPD +L +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 62 ------LPSVQTLRISGNLSCYHSGVSKSLCE-LHKLECLKLVNESKLSRMVLS------ 108
LP + L + S +++S+ + L + K VN KL+ ++ S
Sbjct: 312 DCRPQDLPR-EVLTTN-PRRL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 109 --EYQ--------F------PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS--- 149
EY+ F P L+ L + + D M ++ +L + +++ +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 150 -----YLGRKLACAGSGGFPELKVLH--LKSMY-WLDEWTMGAGALPKLESLIVNPCAY- 200
YL K+ LH + Y + P L+ + +
Sbjct: 427 SIPSIYLELKVKL------ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 201 LRKL-PEELWCIKSLRKLDLHWPQTELRQRLRTFEDMEWRY---------DIQLYPSGI 249
L+ + E + + LD + L Q++R + W ++ Y I
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRF----LEQKIRH-DSTAWNASGSILNTLQQLKFYKPYI 534
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 16/147 (10%)
Query: 33 PKNYFSSLKNLIFISALH---PSSCTPDILGRLPSVQTLRISGN-LSCYHSGVSKSLCEL 88
+ F L+ L + P + + LP+++ L + + + H L
Sbjct: 40 TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA---FQGL 96
Query: 89 HKLECLKLVNESKLSRMVLSEYQFP--PSLIQLSLSNTELME-DPMPMLERLPRLQVLKL 145
L L+L LS VL + F +L +L LS ++ P +L L+ +
Sbjct: 97 FHLFELRL-YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155
Query: 146 KRNSYLGRKLACAGSGGFPELKVLHLK 172
N ++ L+ L
Sbjct: 156 SSN-----QIFLVCEHELEPLQGKTLS 177
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 37/169 (21%), Positives = 60/169 (35%), Gaps = 18/169 (10%)
Query: 11 EDIWMMQKLMHLNFGCITLPAPPKNYFSSLKNLIFISALHPSSCTPD-ILGRLPSVQTLR 69
I + + + L PK ++ NLI +S + L R+P +Q L
Sbjct: 375 TTIHFIPSIPDIFLSGNKLVTLPKINLTA--NLIHLSENRLENLDILYFLLRVPHLQILI 432
Query: 70 ISGNL--SCYHSGVSKSLCELHKLEC----LKLVNESKLSRMVLSEYQFPPSLIQLSLSN 123
++ N SC L +L L+L E++L V L L L++
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL---SHLQVLYLNH 489
Query: 124 TELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPE-LKVLHL 171
L P + L L+ L L N +L P L++L +
Sbjct: 490 NYLNSLPPGVFSHLTALRGLSLNSN-----RLTVLSHNDLPANLEILDI 533
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 27/164 (16%)
Query: 9 SPEDIWMMQKLMHLNFGCITLPAPPKNYFSSLKNLIFISALHPSSCTPDILGRLPSVQTL 68
+ + +M FG + P +N F+ L SV+ L
Sbjct: 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS--------------------SVRHL 271
Query: 69 RISGNLSCYHSGVSKSLCE-LHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELM 127
+S + ++ + E L L+ L L +K++++ + +L L+LS L
Sbjct: 272 DLSHG---FVFSLNSRVFETLKDLKVLNLAY-NKINKIADEAFYGLDNLQVLNLSYNLLG 327
Query: 128 EDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHL 171
E LP++ + L++N + +L+ L L
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHI--AIIQDQTFKFLEKLQTLDL 369
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 9e-04
Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 8/113 (7%)
Query: 62 LPSVQTLRISGN-LSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFP--PSLIQ 118
L + + L +S N + + S L +L+ L+L S+ + + + + F P+L
Sbjct: 23 LNTTERLLLSFNYIRTVTAS---SFPFLEQLQLLEL--GSQYTPLTIDKEAFRNLPNLRI 77
Query: 119 LSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHL 171
L L ++++ + L L L+L L L L L
Sbjct: 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 34/164 (20%)
Query: 59 LGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFP---PS 115
LG ++ L +S N + G +L+ LE L L + + +S + +
Sbjct: 122 LGSCSGLKFLNVSSN-TLDFPGKVSGGLKLNSLEVLDL-SANSISGANVVGWVLSDGCGE 179
Query: 116 LIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMY 175
L L++S ++ + + R L+ L + N++ S G P L
Sbjct: 180 LKHLAISGNKI-SGDVD-VSRCVNLEFLDVSSNNF---------STGIPFL--------- 219
Query: 176 WLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDL 219
G L+ L ++ + L+ L++
Sbjct: 220 ---------GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 30/198 (15%), Positives = 63/198 (31%), Gaps = 35/198 (17%)
Query: 33 PKNYFSSLKNLIF-------ISALHPSSCTPDILGRLPSVQTLRISGN-LSCYHSGVSKS 84
+ L + L L +++TL ++ N +
Sbjct: 50 SAADLAPFTKLELLNLSSNVLYETLD-------LESLSTLRTLDLNNNYVQ--------E 94
Query: 85 LCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLK 144
L +E L + +SR +S + + L+N ++ R+Q L
Sbjct: 95 LLVGPSIETLHA-ANNNISR--VSCSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLD 150
Query: 145 LKRNSYLGRKLACAGSGGFPELKVLHLKS--MYWLDEWTMGAGALPKLESLIVNPCAYLR 202
LK N + + L+ L+L+ +Y + + KL++L ++ L
Sbjct: 151 LKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV----FAKLKTLDLSSN-KLA 204
Query: 203 KLPEELWCIKSLRKLDLH 220
+ E + + L
Sbjct: 205 FMGPEFQSAAGVTWISLR 222
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 4e-04
Identities = 34/221 (15%), Positives = 66/221 (29%), Gaps = 34/221 (15%)
Query: 10 PEDIWMMQKLMHLNFGCITLPAPPKNYFSSLKNLIF-------ISALHPSSCTPDILGRL 62
E + +L + S N+ +S + + L
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-----LAPF 57
Query: 63 PSVQTLRISGN-LSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSL 121
++ L +S N L +L L L+ ++ L+ + E PS+ L
Sbjct: 58 TKLELLNLSSNVLY--------ETLDLESLSTLRTLD---LNNNYVQELLVGPSIETLHA 106
Query: 122 SNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWT 181
+N + R + + L N L G ++ L L + +D
Sbjct: 107 ANNNISRVS---CSRGQGKKNIYLANNKI--TMLRDLDEGCRSRVQYLDL-KLNEIDTVN 160
Query: 182 MGA--GALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLH 220
+ LE L + + + ++ L+ LDL
Sbjct: 161 FAELAASSDTLEHLNLQYNF-IYDVKGQV-VFAKLKTLDLS 199
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 6e-04
Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 24/187 (12%)
Query: 37 FSSLKNLIFISALHPSSCTPDILGRLPSVQTLRISGN-LSCYHSGVSKSLCELHKLECLK 95
S + +L + S L +V+ L S N ++ V+ L L L+
Sbjct: 188 LSLIPSLFH---ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK-LQHNN 243
Query: 96 LVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRN--SYLGR 153
L + + L P L+++ LS EL + ++ RL+ L + N L
Sbjct: 244 LTDTAWLLNY--------PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 295
Query: 154 KLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKS 213
P LKVL L + L +LE+L ++ + + L +
Sbjct: 296 YGQ-----PIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLKLSTH--HT 346
Query: 214 LRKLDLH 220
L+ L L
Sbjct: 347 LKNLTLS 353
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 249 | |||
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.93 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.92 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.91 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.91 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.9 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.89 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.89 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.89 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.89 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.89 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.88 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.88 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.88 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.88 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.88 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.88 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.87 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.87 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.87 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.87 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.87 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.86 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.86 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.86 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.86 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.86 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.86 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.85 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.85 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.85 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.85 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.85 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.85 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.85 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.85 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.84 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.84 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.84 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.84 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.84 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.84 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.83 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.83 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.83 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.83 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.82 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.82 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.82 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.82 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.82 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.82 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.82 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.82 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.81 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.81 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.81 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.81 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.81 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.81 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.81 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.81 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.81 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.8 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.8 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.8 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.8 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.8 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.79 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.79 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.78 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.77 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.77 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.77 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.76 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.76 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.75 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.75 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.75 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.74 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.72 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.72 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.72 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.71 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.71 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.69 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.69 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.68 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.68 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.67 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.67 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.66 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.66 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.66 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.65 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.65 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.65 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.64 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.64 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.63 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.63 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.63 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.62 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.61 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.6 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.6 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.59 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.59 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.58 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.57 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.57 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.57 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.55 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.53 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.53 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.52 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.49 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.46 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.44 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.42 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.39 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.38 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.37 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.37 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.36 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.34 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.33 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.33 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.32 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.31 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.29 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.27 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.24 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.13 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.1 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.09 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.03 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.01 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.01 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.9 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.87 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.85 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.8 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.75 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.7 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.7 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.7 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.47 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.39 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.22 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.95 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.95 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.94 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.81 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.76 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.6 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.52 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.09 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.63 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.48 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.03 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 94.99 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 91.4 |
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-28 Score=197.10 Aligned_cols=214 Identities=21% Similarity=0.226 Sum_probs=191.1
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
|+++.++++|+.+..+++|++| +++| .+. .+|..++.+++|++|++.++. ..+|..++++++|+.|++++|. ..
T Consensus 88 L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~--~~ 163 (328)
T 4fcg_A 88 LRSVPLPQFPDQAFRLSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP--EL 163 (328)
T ss_dssp EESSCCSSCCSCGGGGTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEET--TC
T ss_pred ccCCCchhcChhhhhCCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCC--Cc
Confidence 3578899999999999999999 9888 877 899999999999999976666 7889999999999999999987 66
Q ss_pred cchhhhhcC---------CCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccc
Q 039403 79 SGVSKSLCE---------LHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS 149 (249)
Q Consensus 79 ~~~~~~l~~---------l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 149 (249)
+.+|..+.. +++|+.|+++++. +..++..+.. +++|+.|++++|.++ ..+..+..+++|++|++++|.
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~-l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGG-CTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCT
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcC-CCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCc
Confidence 777766654 9999999999987 8877667888 999999999999998 577789999999999999998
Q ss_pred cCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 150 YLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 150 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.+.. +.. ++.+++|++|++++|+..+.+|..+..+++|+.|++++|.+.+.+|+.++.+++++.+++..+.
T Consensus 241 ~~~~~-p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 241 ALRNY-PPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TCCBC-CCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred chhhh-HHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 88766 667 8899999999999987777999999999999999999999999999999999999999998764
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-26 Score=186.88 Aligned_cols=213 Identities=20% Similarity=0.220 Sum_probs=183.4
Q ss_pred CCCCcc---ccchhhhhcccccee-eec-CcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCc
Q 039403 2 PSSYID---QSPEDIWMMQKLMHL-NFG-CITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNL 74 (249)
Q Consensus 2 ~~~~l~---~lp~~i~~l~~L~~L-l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~ 74 (249)
+++.++ .+|+.+..+++|++| +++ | .+.+.+|..++.+++|++|++.++. +.+|..+.++++|++|++++|.
T Consensus 58 ~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 136 (313)
T 1ogq_A 58 SGLNLPKPYPIPSSLANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136 (313)
T ss_dssp ECCCCSSCEECCGGGGGCTTCSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CCCCccCCcccChhHhCCCCCCeeeCCCCC-cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc
Confidence 456676 699999999999999 885 6 8888999999999999999977766 4788889999999999999997
Q ss_pred cccccchhhhhcCCCCCcEEEEecCCCce-eeeecCCCCCC-CccEEEEEcccCCCCCcccccCCCCCceEEeeccccCC
Q 039403 75 SCYHSGVSKSLCELHKLECLKLVNESKLS-RMVLSEYQFPP-SLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLG 152 (249)
Q Consensus 75 ~~~~~~~~~~l~~l~~L~~L~l~~~~~L~-~l~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 152 (249)
..+.+|..+..+++|++|+++++. +. .++..+.. ++ .|+.|++++|.+++..+..+..++ |+.|++++|.+.+
T Consensus 137 --l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~-l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 137 --LSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp --EESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGC-CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred --cCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhh-hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence 766788899999999999999987 76 44446777 76 899999999998877788888887 9999999998876
Q ss_pred ceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 153 RKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 153 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.. +.. +..+++|+.|++++ +.++..+..+..+++|++|++++|.+.+.+|..+..+++|+++++++|.
T Consensus 212 ~~-~~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 212 DA-SVL-FGSDKNTQKIHLAK-NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp CC-GGG-CCTTSCCSEEECCS-SEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred cC-CHH-HhcCCCCCEEECCC-CceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 54 666 78899999999999 6677555557788999999999999988889999999999999999995
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=195.76 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=62.4
Q ss_pred CCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc-ceeccCcccccccceeeccCcCcCCCccccccCcCcc
Q 039403 137 LPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD-EWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLR 215 (249)
Q Consensus 137 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~ 215 (249)
+++|+.|++++|.+.+.. |.. ++.+++|+.|++++ |.++ .+|..++.+++|+.|++++|.+++.+|..+..++.|+
T Consensus 631 l~~L~~LdLs~N~l~g~i-p~~-l~~l~~L~~L~Ls~-N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYI-PKE-IGSMPYLFILNLGH-NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp SBCCCEEECCSSCCBSCC-CGG-GGGCTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred cccccEEECcCCcccccC-CHH-HhccccCCEEeCcC-CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 455667777777776655 556 67777788888887 4554 7777788888888888888888777888888888888
Q ss_pred EEEccCC
Q 039403 216 KLDLHWP 222 (249)
Q Consensus 216 ~l~l~~~ 222 (249)
++++++|
T Consensus 708 ~L~ls~N 714 (768)
T 3rgz_A 708 EIDLSNN 714 (768)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 8888877
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=194.87 Aligned_cols=215 Identities=19% Similarity=0.139 Sum_probs=182.5
Q ss_pred CCCCcc-ccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCcccc
Q 039403 2 PSSYID-QSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 2 ~~~~l~-~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
+++.++ .+|..+..+++|++| +++| .+.+.+|..++.+++|++|++.++. +.+|..+..+++|+.|++++|. .
T Consensus 402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~--l 478 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND--L 478 (768)
T ss_dssp CSSEEEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--C
T ss_pred CCCccccccCHHHhcCCCCCEEECcCC-cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc--c
Confidence 455665 788899999999999 8888 8888899999999999999966666 5788889999999999999997 7
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCce-eeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceee
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLS-RMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~-~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
.+.+|..+..+++|+.|+++++. +. .++.++.. +++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+.
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNR-LTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSC-CCSCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred cCcCCHHHhcCCCCCEEEccCCc-cCCcCChHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 77788889999999999999977 66 33447788 89999999999999888888999999999999998877644311
Q ss_pred ---------------------------------------------------------------------eeCCCCCCccc
Q 039403 157 ---------------------------------------------------------------------CAGSGGFPELK 167 (249)
Q Consensus 157 ---------------------------------------------------------------------~~~~~~~~~L~ 167 (249)
.. ++.+++|+
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~-~~~l~~L~ 635 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT-FDNNGSMM 635 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS-CSSSBCCC
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh-hhcccccc
Confidence 12 33457899
Q ss_pred EEEeccCCccc-ceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 168 VLHLKSMYWLD-EWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 168 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.|++++ |.++ .+|..++.++.|+.|++++|.+++.+|..++.++.|+.||+++|.
T Consensus 636 ~LdLs~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 636 FLDMSY-NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp EEECCS-SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECcC-CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 999999 5555 899999999999999999999999999999999999999999995
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=171.97 Aligned_cols=198 Identities=22% Similarity=0.263 Sum_probs=172.8
Q ss_pred cccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcE
Q 039403 16 MQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLEC 93 (249)
Q Consensus 16 l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 93 (249)
.++++.| +.++ .+. .+|..++.+++|++|++.++. ..+|..++++++|++|++++|. .. .+|..+.++++|+.
T Consensus 80 ~~~l~~L~L~~n-~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~--l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSV-PLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP--LR-ALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESS-CCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC--CC-CCCGGGGGCTTCCE
T ss_pred ccceeEEEccCC-Cch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc--cc-cCcHHHhcCcCCCE
Confidence 4889999 8888 776 889999999999999976666 7888889999999999999996 54 78889999999999
Q ss_pred EEEecCCCceeeee---------cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCC
Q 039403 94 LKLVNESKLSRMVL---------SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFP 164 (249)
Q Consensus 94 L~l~~~~~L~~l~l---------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 164 (249)
|+++++..+..++. .+.. +++|+.|++++|.++ ..|..++.+++|++|++++|.+.+ .+.. ++.++
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~-l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~--l~~~-l~~l~ 229 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQG-LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA--LGPA-IHHLP 229 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEE-STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC--CCGG-GGGCT
T ss_pred EECCCCCCccccChhHhhccchhhhcc-CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc--Cchh-hccCC
Confidence 99998442343332 2446 889999999999998 788889999999999999999875 2556 78899
Q ss_pred cccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 165 ELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+|++|++++|+..+.+|..+..+++|+.|++++|.+.+.+|..++.+++|++|++++|.
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 99999999977777899999999999999999999999999999999999999999986
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-24 Score=176.01 Aligned_cols=209 Identities=16% Similarity=0.160 Sum_probs=182.0
Q ss_pred CCcc-ccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCcccccc
Q 039403 4 SYID-QSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 4 ~~l~-~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
+.+. .+|..++.+++|++| +++| .+.+.+|..++.+++|++|++.++. +.+|..+..+++|++|++++|. ..+
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~--l~~ 163 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR--ISG 163 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC--CEE
T ss_pred CcccccCChhHhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc--ccC
Confidence 4444 899999999999999 9988 8888899999999999999966655 5788999999999999999997 776
Q ss_pred chhhhhcCCC-CCcEEEEecCCCceeee-ecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeee
Q 039403 80 GVSKSLCELH-KLECLKLVNESKLSRMV-LSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLAC 157 (249)
Q Consensus 80 ~~~~~l~~l~-~L~~L~l~~~~~L~~l~-l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 157 (249)
.+|..+..++ +|+.|+++++. +.... ..+.. ++ |+.|++++|.+++..+..+..+++|+.|++++|.+.+.. .
T Consensus 164 ~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~-l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~ 238 (313)
T 1ogq_A 164 AIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFAN-LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL--G 238 (313)
T ss_dssp ECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGG-CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG--G
T ss_pred cCCHHHhhhhhcCcEEECcCCe-eeccCChHHhC-Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec--C
Confidence 8888999998 99999999977 66333 36666 66 999999999998788889999999999999999987643 3
Q ss_pred eCCCCCCcccEEEeccCCccc-ceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 158 AGSGGFPELKVLHLKSMYWLD-EWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 158 ~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
. +..+++|++|++++ +.++ .+|..+..+++|+.|++++|.+++.+|.. +.++.|+.+++++|+
T Consensus 239 ~-~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 239 K-VGLSKNLNGLDLRN-NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp G-CCCCTTCCEEECCS-SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred c-ccccCCCCEEECcC-CcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 4 66789999999999 5666 88888999999999999999999888875 889999999999996
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-23 Score=166.03 Aligned_cols=212 Identities=19% Similarity=0.151 Sum_probs=175.8
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++..++++|..+ .++|++| +.+| .+....+..++.+++|++|++.++. ..+ +..+.++++|++|++++|. ..
T Consensus 19 ~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--~l 93 (285)
T 1ozn_A 19 PQQGLQAVPVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA--QL 93 (285)
T ss_dssp CSSCCSSCCTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT--TC
T ss_pred CcCCcccCCcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC--Cc
Confidence 467899999765 5799999 8888 8876666778999999999966666 444 6788999999999999994 35
Q ss_pred cch-hhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceee
Q 039403 79 SGV-SKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 79 ~~~-~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
..+ +..+..+++|+.|+++++. +..+.. .+.. +++|++|++++|.++...+..+..+++|+.|++++|.+.+.. +
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~ 170 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRG-LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-E 170 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-T
T ss_pred cccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhC-CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-H
Confidence 554 6778999999999999977 776644 5777 999999999999998655567899999999999999887532 4
Q ss_pred eeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 157 CAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 157 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.. +..+++|++|++++ +.++.+ +..+..+++|+.|++++|.+.+..+..+..+++|+++++++|+
T Consensus 171 ~~-~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 171 RA-FRGLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TT-TTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred HH-hcCccccCEEECCC-CcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 45 77899999999999 667755 7778899999999999999876545668899999999999985
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=170.19 Aligned_cols=214 Identities=15% Similarity=0.065 Sum_probs=132.0
Q ss_pred CCCCccccchh-hhhcccccee-eecCcccCC--CCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccc
Q 039403 2 PSSYIDQSPED-IWMMQKLMHL-NFGCITLPA--PPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 2 ~~~~l~~lp~~-i~~l~~L~~L-l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~ 76 (249)
+++.++++|.. +..+++|++| +++| .+.. ..+..+..+++|++|++.++. ..++..+..+++|++|++++|.
T Consensus 36 ~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-- 112 (306)
T 2z66_A 36 ESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-- 112 (306)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE--
T ss_pred CCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc--
Confidence 34455555543 3455555555 4444 3321 112333345555555533333 3444445555566666665553
Q ss_pred cccchh-hhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCC-CCcccccCCCCCceEEeeccccCCc
Q 039403 77 YHSGVS-KSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELME-DPMPMLERLPRLQVLKLKRNSYLGR 153 (249)
Q Consensus 77 ~~~~~~-~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~ 153 (249)
.....+ ..+..+++|+.|+++++. +..... .+.. +++|+.|++++|.+.+ ..+..+..+++|++|++++|.+.+.
T Consensus 113 l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 113 LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp EESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ccccccchhhhhccCCCEEECCCCc-CCccchhhccc-CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc
Confidence 222211 345556666666666654 443332 4556 7778888888887764 3566777788888888888877653
Q ss_pred eeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCccccccCc-CccEEEccCCc
Q 039403 154 KLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLPEELWCIK-SLRKLDLHWPQ 223 (249)
Q Consensus 154 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~-~L~~l~l~~~~ 223 (249)
. +.. +..+++|++|++++ +.++.++. .+..+++|+.|++++|.+.+..+..+..++ +|+++++++|+
T Consensus 191 ~-~~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 191 S-PTA-FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp C-TTT-TTTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred C-HHH-hcCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 3 445 67788888888888 56665544 466788899999999888777777777774 89999999885
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=172.25 Aligned_cols=215 Identities=20% Similarity=0.150 Sum_probs=149.7
Q ss_pred CCCCCccccc-hhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSP-EDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp-~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~ 76 (249)
|+++.++.++ ..+..+++|++| +++| .+.+..|..++++++|++|++.++. ..++. .+.++++|++|++++|.
T Consensus 39 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-- 115 (477)
T 2id5_A 39 LGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-- 115 (477)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC--
T ss_pred CCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc--
Confidence 4677888885 578889999999 8888 7777778888899999999966655 55655 46788999999999886
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCcee
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKL 155 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 155 (249)
.....+..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|.+++..+..+..+++|+.|++.+|.+.+..
T Consensus 116 i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~- 192 (477)
T 2id5_A 116 IVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSG-LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR- 192 (477)
T ss_dssp CCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTT-CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC-
T ss_pred cccCChhHccccccCCEEECCCCc-cceeChhhccC-CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC-
Confidence 666667778889999999998877 666654 5677 888888888888887555566778888888888877765432
Q ss_pred eeeCCCCCCcccEEEeccCCcccceeccC------------------------cccccccceeeccCcCcCCCccccccC
Q 039403 156 ACAGSGGFPELKVLHLKSMYWLDEWTMGA------------------------GALPKLESLIVNPCAYLRKLPEELWCI 211 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------------~~~~~L~~L~l~~~~~~~~l~~~l~~l 211 (249)
+.. +..+++|+.|++++|+.++.++... ..+++|+.|++++|.+.+..+..+..+
T Consensus 193 ~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 193 DYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp TTC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred hhh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 334 5666667777766654444444433 344555555555555443333344455
Q ss_pred cCccEEEccCC
Q 039403 212 KSLRKLDLHWP 222 (249)
Q Consensus 212 ~~L~~l~l~~~ 222 (249)
++|++|++++|
T Consensus 272 ~~L~~L~L~~n 282 (477)
T 2id5_A 272 LRLQEIQLVGG 282 (477)
T ss_dssp TTCCEEECCSS
T ss_pred ccCCEEECCCC
Confidence 55555555555
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=164.23 Aligned_cols=208 Identities=18% Similarity=0.177 Sum_probs=118.5
Q ss_pred CCCCCccccch-hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccc
Q 039403 1 MPSSYIDQSPE-DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 1 l~~~~l~~lp~-~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
++++.++.+|. .+..+++|++| +++| .+.+..|..++.+++|++|++.++. ..+|..+. ++|+.|++++|. .
T Consensus 59 L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~--l 133 (330)
T 1xku_A 59 LQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE--I 133 (330)
T ss_dssp CCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSC--C
T ss_pred CCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCc--c
Confidence 45677777776 57788888888 7777 6665567777788888888855554 55555443 567777777665 4
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeee---cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCce
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVL---SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRK 154 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 154 (249)
....+..+..+++|+.|+++++. +..... .+.. +++|+.|++++|.++ ..+..+. ++|+.|++++|.+.+..
T Consensus 134 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~-l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 134 TKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQG-MKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVD 208 (330)
T ss_dssp CBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGG-CTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEEC
T ss_pred cccCHhHhcCCccccEEECCCCc-CCccCcChhhccC-CCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccC
Confidence 44445566777777777777654 432111 3444 555666666555554 2332221 45555555555544322
Q ss_pred eeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCccccccCcCccEEEccCC
Q 039403 155 LACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~ 222 (249)
+.. +..+++|++|++++ +.++.++. .+..+++|+.|++++|.+. .+|..+..+++|+++++++|
T Consensus 209 -~~~-~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 209 -AAS-LKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp -TGG-GTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS
T ss_pred -HHH-hcCCCCCCEEECCC-CcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCC
Confidence 233 44555555555555 34443332 3445555555555555543 44555555555555555555
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=171.38 Aligned_cols=214 Identities=17% Similarity=0.124 Sum_probs=161.5
Q ss_pred CCCCCcccc-chhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQS-PEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~l-p~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~ 76 (249)
|+++.++.+ |..+..+++|+.| +++| .+.+..+..+..+++|++|++.++. ..++. .+.++++|++|++++|.
T Consensus 82 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-- 158 (452)
T 3zyi_A 82 LMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-- 158 (452)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC--
T ss_pred CcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC--
Confidence 456677776 3457778888888 7777 6666666677778888888855555 44444 36678888888888875
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCcee
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKL 155 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 155 (249)
.....+..+.++++|+.|+++++..+..+.. .+.. +++|+.|++++|.+++ . +.+..+++|+.|++++|.+.+..
T Consensus 159 l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~- 234 (452)
T 3zyi_A 159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCNIKD-M-PNLTPLVGLEELEMSGNHFPEIR- 234 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CTTCCEEECTTSCCSS-C-CCCTTCTTCCEEECTTSCCSEEC-
T ss_pred cceeCHhHHhcCCcccEEeCCCCCCccccChhhccC-CCCCCEEECCCCcccc-c-ccccccccccEEECcCCcCcccC-
Confidence 4443445677788888888877333666554 5677 8899999999998873 3 46788899999999999887644
Q ss_pred eeeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 156 ACAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.. +..+++|+.|++++ +.++.+ +..+..+++|+.|++++|.+.+..+..+..+++|+++++++|+
T Consensus 235 ~~~-~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 235 PGS-FHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp GGG-GTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ccc-ccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 566 88899999999999 677755 5567789999999999999875445567889999999999985
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-23 Score=169.72 Aligned_cols=213 Identities=18% Similarity=0.147 Sum_probs=129.7
Q ss_pred CCCCccccch-hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchh-cCCCcccCeEEEecCcccc
Q 039403 2 PSSYIDQSPE-DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDI-LGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 2 ~~~~l~~lp~-~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~~~~ 77 (249)
+++.++.+|. .+..+++|++| +.+| .+.+..+..++.+++|++|++.++. ..++.. +.++++|++|++++|. .
T Consensus 60 ~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l 136 (353)
T 2z80_A 60 SNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP--Y 136 (353)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC--C
T ss_pred CCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC--C
Confidence 4555666655 46666666666 6555 5554445556666666666644444 444443 5666666666666663 2
Q ss_pred ccchhh--hhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCce
Q 039403 78 HSGVSK--SLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRK 154 (249)
Q Consensus 78 ~~~~~~--~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 154 (249)
. .++. .+..+++|+.|+++++..+..+.. .+.. +++|+.|++++|.+++..+..+..+++|++|++++|.+....
T Consensus 137 ~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 137 K-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG-LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp S-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT-CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred c-ccCchhhhccCCCCcEEECCCCccccccCHHHccC-CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence 2 3332 455666666666666422444432 4555 666666666666665544566666666666666666553211
Q ss_pred eeeeCCCCCCcccEEEeccCCcccc--------------------------------eeccCcccccccceeeccCcCcC
Q 039403 155 LACAGSGGFPELKVLHLKSMYWLDE--------------------------------WTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~~~~~~~--------------------------------~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
... +..+++|+.|++++ +.++. +|..+..+++|+.|++++|.+.
T Consensus 215 -~~~-~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~- 290 (353)
T 2z80_A 215 -EIF-VDVTSSVECLELRD-TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK- 290 (353)
T ss_dssp -HHH-HHHTTTEEEEEEES-CBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred -hhh-hhhcccccEEECCC-CccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence 112 22356666666666 34432 3334557789999999999976
Q ss_pred CCcccc-ccCcCccEEEccCCc
Q 039403 203 KLPEEL-WCIKSLRKLDLHWPQ 223 (249)
Q Consensus 203 ~l~~~l-~~l~~L~~l~l~~~~ 223 (249)
.+|..+ ..+++|+++++++|+
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHHHHhcCCCCCEEEeeCCC
Confidence 677764 789999999999995
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-22 Score=165.95 Aligned_cols=210 Identities=20% Similarity=0.221 Sum_probs=108.7
Q ss_pred CCCCccccch-hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchh-cCCCcccCeEEEecCcccc
Q 039403 2 PSSYIDQSPE-DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDI-LGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 2 ~~~~l~~lp~-~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~~~~ 77 (249)
+++.++.+|. .+..+++|++| +++| .+.+..|..++.+++|++|++.++. ..+|.. +.++++|++|++++|. .
T Consensus 77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~--l 153 (390)
T 3o6n_A 77 NDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN--L 153 (390)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--C
T ss_pred CCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc--c
Confidence 4555666554 56666666666 6655 5555555556666666666644444 445544 3566667777776664 4
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeee--------------------------------------------------
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVL-------------------------------------------------- 107 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-------------------------------------------------- 107 (249)
....+..+..+++|+.|+++++. +..+..
T Consensus 154 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ 232 (390)
T 3o6n_A 154 ERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK 232 (390)
T ss_dssp CBCCTTTTSSCTTCCEEECCSSC-CSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEE
T ss_pred CccChhhccCCCCCCEEECCCCc-CCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEE
Confidence 44444456666666666666633 221110
Q ss_pred ----------cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcc
Q 039403 108 ----------SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWL 177 (249)
Q Consensus 108 ----------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 177 (249)
++.. +++|+.|++++|.+++..+..+..+++|+.|++++|.+.+ .+.. ...+++|++|++++ +.+
T Consensus 233 l~~n~l~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~-~~~l~~L~~L~L~~-n~l 307 (390)
T 3o6n_A 233 LQHNNLTDTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLY-GQPIPTLKVLDLSH-NHL 307 (390)
T ss_dssp CCSSCCCCCGGGGG-CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE--EECS-SSCCTTCCEEECCS-SCC
T ss_pred CCCCCCcccHHHcC-CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc--cCcc-cCCCCCCCEEECCC-Ccc
Confidence 1222 3344444444444443333444444445555554444432 1222 33445555555555 344
Q ss_pred cceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 178 DEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 178 ~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.+|..+..+++|+.|++++|.+.. ++ +..+++|+++++++|+
T Consensus 308 ~~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 308 LHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSC
T ss_pred eecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCC
Confidence 4444444455555555555555432 22 4455666666666665
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-23 Score=185.35 Aligned_cols=212 Identities=16% Similarity=0.097 Sum_probs=164.3
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCC-----------------CCCcCC--CCccccccccccCC--CCcchhcC
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAP-----------------PKNYFS--SLKNLIFISALHPS--SCTPDILG 60 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~--~~~~~~l~ 60 (249)
++.++.+|+.++++++|++| +++| .+.+. +|..++ ++++|++|++.++. +.+|..++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 45777899999999999999 9988 78775 999999 99999999977766 78899999
Q ss_pred CCcccCeEEEecCcccccc-chhhhhcCC------CCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCc
Q 039403 61 RLPSVQTLRISGNLSCYHS-GVSKSLCEL------HKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPM 131 (249)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~-~~~~~l~~l------~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~ 131 (249)
++++|+.|++++|. ...+ .+|..+.++ ++|+.|+++++. +..++. .+.. +++|+.|++++|.+++..|
T Consensus 271 ~l~~L~~L~Ls~n~-~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~-l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 271 ALPEMQLINVACNR-GISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQK-MKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TCSSCCEEECTTCT-TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTT-CTTCCEEECCSCCCEEECC
T ss_pred cCCCCCEEECcCCC-CCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhcc-CCCCCEEeCcCCcCccchh
Confidence 99999999999984 1233 578777766 899999999987 777765 6778 8889999998888876666
Q ss_pred ccccCCCCCceEEeeccccCCceeeeeCCCCCCc-ccEEEeccCCcccceeccCcccc--cccceeeccCcCcCCCcccc
Q 039403 132 PMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPE-LKVLHLKSMYWLDEWTMGAGALP--KLESLIVNPCAYLRKLPEEL 208 (249)
Q Consensus 132 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~l~~~l 208 (249)
.++.+++|+.|++++|.+. . .+.. +..+++ |++|++++ +.++.+|..+..++ +|+.|++++|.+.+.+|..+
T Consensus 348 -~~~~l~~L~~L~L~~N~l~-~-lp~~-l~~l~~~L~~L~Ls~-N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 348 -AFGSEIKLASLNLAYNQIT-E-IPAN-FCGFTEQVENLSFAH-NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp -CCEEEEEESEEECCSSEEE-E-CCTT-SEEECTTCCEEECCS-SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred -hhCCCCCCCEEECCCCccc-c-ccHh-hhhhcccCcEEEccC-CcCcccchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence 7777788888888887766 2 2445 666677 88888887 56667776665443 77777777777766666666
Q ss_pred c-------cCcCccEEEccCCc
Q 039403 209 W-------CIKSLRKLDLHWPQ 223 (249)
Q Consensus 209 ~-------~l~~L~~l~l~~~~ 223 (249)
. .+++|++|++++|.
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~ 444 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQ 444 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSC
T ss_pred cccccccccCCCCCEEECcCCc
Confidence 5 56677777777764
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=164.25 Aligned_cols=211 Identities=22% Similarity=0.185 Sum_probs=174.8
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCC-cCCCCccccccccccCC-CC---cchhcCCCcccCeEEEecCcc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKN-YFSSLKNLIFISALHPS-SC---TPDILGRLPSVQTLRISGNLS 75 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~-~~---~~~~l~~l~~L~~L~l~~~~~ 75 (249)
++..++++|..+. ++|++| +++| .+. .+|. .++.+++|++|++.++. .. .+..+..+++|++|++++|.
T Consensus 15 ~~~~l~~ip~~~~--~~l~~L~L~~n-~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~- 89 (306)
T 2z66_A 15 NSKGLTSVPTGIP--SSATRLELESN-KLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG- 89 (306)
T ss_dssp CSSCCSSCCSCCC--TTCCEEECCSS-CCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-
T ss_pred CCCCcccCCCCCC--CCCCEEECCCC-ccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-
Confidence 4678999998764 799999 8888 777 4554 47899999999966655 33 35677789999999999995
Q ss_pred ccccchhhhhcCCCCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCc
Q 039403 76 CYHSGVSKSLCELHKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGR 153 (249)
Q Consensus 76 ~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 153 (249)
. ..++..+..+++|+.|+++++. +..+.. .+.. +++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus 90 -i-~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 90 -V-ITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp -E-EEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTT-CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred -c-ccChhhcCCCCCCCEEECCCCc-ccccccchhhhh-ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 3 4567778899999999999976 666553 5777 89999999999998877778889999999999999998764
Q ss_pred eeeeeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 154 KLACAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 154 ~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
..+.. +..+++|++|++++ +.++.+ +..+..+++|+.|++++|.+.+..+..+..+++|+++++++|.
T Consensus 166 ~~~~~-~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 166 FLPDI-FTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EECSC-CTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred cchhH-HhhCcCCCEEECCC-CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 44667 88999999999999 677766 5677899999999999999876555578889999999999995
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=169.10 Aligned_cols=214 Identities=17% Similarity=0.136 Sum_probs=154.5
Q ss_pred CCCCCccccc-hhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSP-EDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp-~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~ 76 (249)
|+++.++.++ ..+..+++|+.| +++| .+....+..+..+++|++|++.++. ..++. .+..+++|++|++++|.
T Consensus 71 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-- 147 (440)
T 3zyj_A 71 LHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-- 147 (440)
T ss_dssp CCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC--
T ss_pred ccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc--
Confidence 3456666665 456777777777 6666 6655555666777777777755554 44444 46677777777777775
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCcee
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKL 155 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 155 (249)
.....+..+..+++|+.|+++++..+..+.. .+.. +++|+.|++++|.++ .. +.+..+++|+.|++++|.+.+..
T Consensus 148 i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L~L~~n~l~-~~-~~~~~l~~L~~L~Ls~N~l~~~~- 223 (440)
T 3zyj_A 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-LSNLRYLNLAMCNLR-EI-PNLTPLIKLDELDLSGNHLSAIR- 223 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CSSCCEEECTTSCCS-SC-CCCTTCSSCCEEECTTSCCCEEC-
T ss_pred ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc-ccccCeecCCCCcCc-cc-cccCCCcccCEEECCCCccCccC-
Confidence 4443344667777777777776332555544 5677 888999999999886 33 35788889999999999887543
Q ss_pred eeeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 156 ACAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.. +..+++|+.|++++ +.++.+ +..+..+++|+.|++++|.+....+..+..+++|+.+++++|+
T Consensus 224 ~~~-~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 224 PGS-FQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTT-TTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hhh-hccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 556 78899999999999 677755 4457789999999999999876445567889999999999985
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-22 Score=174.79 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=61.3
Q ss_pred CCCCCccccch-hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchh-cCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSPE-DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDI-LGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp~-~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~~~ 76 (249)
|+++.++.+|+ .++.+++|+.| +++| .+.+..|..++.+++|++|++.++. ..+|.. ++++++|+.|++++|.
T Consensus 82 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-- 158 (597)
T 3oja_B 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-- 158 (597)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--
T ss_pred CCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc--
Confidence 34566666654 56667777777 6666 6665555556677777777755544 555544 4667777777777775
Q ss_pred cccchhhhhcCCCCCcEEEEecCC
Q 039403 77 YHSGVSKSLCELHKLECLKLVNES 100 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~ 100 (249)
.....|..+..+++|+.|+++++.
T Consensus 159 l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 159 LERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp CCBCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCChhhhhcCCcCcEEECcCCC
Confidence 544455566677777777776643
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=172.26 Aligned_cols=108 Identities=21% Similarity=0.144 Sum_probs=68.3
Q ss_pred CCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccce-eccCccccccc
Q 039403 113 PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLE 191 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~ 191 (249)
+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.. +.. +..+++|++|++++ +.++.+ +..+..+++|+
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-SRM-FENLDKLEVLDLSY-NHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGG-GTTCTTCCEEECCS-SCCCEECTTTTTTCTTCC
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC-hhH-hcCcccCCEEECCC-CcccccChhhcccccccc
Confidence 555666666666655444455666666666666666664322 344 56677777777777 455544 55566777777
Q ss_pred ceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 192 SLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 192 ~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+|++++|.+.+..+..+..+++|+++++++|+
T Consensus 375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 77777777654333345677777788777764
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=167.56 Aligned_cols=215 Identities=17% Similarity=0.099 Sum_probs=144.1
Q ss_pred CCCCCcccc-chhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-C-CcchhcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQS-PEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-S-CTPDILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~l-p~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~ 76 (249)
|+++.++.+ |..+..+++|++| +++| .+....+..++.+++|++|++.++. . ..+..+.++++|+.|++++|.
T Consensus 63 L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-- 139 (477)
T 2id5_A 63 LNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-- 139 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT--
T ss_pred CCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc--
Confidence 356677777 5677888888888 7777 6664444456777788888755554 2 334556677777777777775
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCceeeee-------------------------cCCCCCCCccEEEEEcccCCCCCc
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSRMVL-------------------------SEYQFPPSLIQLSLSNTELMEDPM 131 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-------------------------~~~~~~~~L~~L~l~~~~~~~~~~ 131 (249)
.....+..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|...+..+
T Consensus 140 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 140 LVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR-LYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp CCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCS-CTTCCEEEEECCTTCCEEC
T ss_pred cceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhccc-CcccceeeCCCCccccccC
Confidence 444445556666667776666644 433332 3344 4555555555554443344
Q ss_pred ccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCcccccc
Q 039403 132 PMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLPEELWC 210 (249)
Q Consensus 132 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~l~~ 210 (249)
.......+|+.|++++|.+.+.. ... +..+++|+.|++++ +.++.++. .+..+++|+.|++++|.+.+..+..+..
T Consensus 218 ~~~~~~~~L~~L~l~~n~l~~~~-~~~-~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (477)
T 2id5_A 218 PNCLYGLNLTSLSITHCNLTAVP-YLA-VRHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294 (477)
T ss_dssp TTTTTTCCCSEEEEESSCCCSCC-HHH-HTTCTTCCEEECCS-SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred cccccCccccEEECcCCcccccC-HHH-hcCccccCeeECCC-CcCCccChhhccccccCCEEECCCCccceECHHHhcC
Confidence 43444446666666666665422 234 67789999999999 66776654 4678999999999999988766788899
Q ss_pred CcCccEEEccCCc
Q 039403 211 IKSLRKLDLHWPQ 223 (249)
Q Consensus 211 l~~L~~l~l~~~~ 223 (249)
+++|++|++++|.
T Consensus 295 l~~L~~L~L~~N~ 307 (477)
T 2id5_A 295 LNYLRVLNVSGNQ 307 (477)
T ss_dssp CTTCCEEECCSSC
T ss_pred cccCCEEECCCCc
Confidence 9999999999995
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-22 Score=175.03 Aligned_cols=107 Identities=21% Similarity=0.175 Sum_probs=54.4
Q ss_pred CCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceee--eeCCCCCCcccEEEeccCCcccce-eccCccccc
Q 039403 113 PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLA--CAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPK 189 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~ 189 (249)
+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+...+ .. +..+++|++|++++ +.++++ |..+..+++
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~ 501 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS-LQTLGRLEILVLSF-CDLSSIDQHAFTSLKM 501 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG-GGGCTTCCEEECTT-SCCCEECTTTTTTCTT
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchh-hccCCCccEEECCC-CccCccChhhhccccC
Confidence 44455555555544444444455555555555555554432111 22 34455555555555 344433 344555556
Q ss_pred ccceeeccCcCcCCCccccccCcCccEEEccCC
Q 039403 190 LESLIVNPCAYLRKLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 190 L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~ 222 (249)
|+.|++++|.+.+..|..+..++.| ++++++|
T Consensus 502 L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 502 MNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp CCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred CCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 6666666665555455555555555 6666655
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-22 Score=163.45 Aligned_cols=211 Identities=18% Similarity=0.116 Sum_probs=165.3
Q ss_pred CCCCcc--ccchhhh-------hcccccee-eecCcccCCCCCCcC--CCCccccccccccCC-CCcchhcCCC-----c
Q 039403 2 PSSYID--QSPEDIW-------MMQKLMHL-NFGCITLPAPPKNYF--SSLKNLIFISALHPS-SCTPDILGRL-----P 63 (249)
Q Consensus 2 ~~~~l~--~lp~~i~-------~l~~L~~L-l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~-~~~~~~l~~l-----~ 63 (249)
+++.++ .+|..+. .+++|++| +++| .+.+.+|..+ +.+++|++|++.++. ...|..++.+ +
T Consensus 71 ~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~ 149 (312)
T 1wwl_A 71 KRLTVRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149 (312)
T ss_dssp CEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCT
T ss_pred ccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcC
Confidence 344443 3666665 79999999 8888 8888888876 889999999966666 5557766666 8
Q ss_pred ccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceee---ee--cCCCCCCCccEEEEEcccCCC--CCc-cccc
Q 039403 64 SVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRM---VL--SEYQFPPSLIQLSLSNTELME--DPM-PMLE 135 (249)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l---~l--~~~~~~~~L~~L~l~~~~~~~--~~~-~~~~ 135 (249)
+|++|++++|. .....+..+..+++|+.|+++++. +... .. .+.. +++|+.|++++|.+++ ..+ ..+.
T Consensus 150 ~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 150 GLKVLSIAQAH--SLNFSCEQVRVFPALSTLDLSDNP-ELGERGLISALCPLK-FPTLQVLALRNAGMETPSGVCSALAA 225 (312)
T ss_dssp TCCEEEEESCS--CCCCCTTTCCCCSSCCEEECCSCT-TCHHHHHHHHSCTTS-CTTCCEEECTTSCCCCHHHHHHHHHH
T ss_pred CCcEEEeeCCC--CccchHHHhccCCCCCEEECCCCC-cCcchHHHHHHHhcc-CCCCCEEECCCCcCcchHHHHHHHHh
Confidence 99999999997 666666889999999999999976 4331 11 2367 8999999999999873 122 3345
Q ss_pred CCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCcc
Q 039403 136 RLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLR 215 (249)
Q Consensus 136 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~ 215 (249)
.+++|+.|++++|.+.+...... +..+++|++|++++ |.++.+|..+. ++|+.|++++|.+.+ +|. +..+++|+
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N~l~~-~p~-~~~l~~L~ 299 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPS-CDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSYNRLDR-NPS-PDELPQVG 299 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSC-CCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCSSCCCS-CCC-TTTSCEEE
T ss_pred cCCCCCEEECCCCcCCcccchhh-hhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCCCCCCC-Chh-HhhCCCCC
Confidence 78999999999999877542234 55678999999999 67888888766 899999999999765 466 88899999
Q ss_pred EEEccCCc
Q 039403 216 KLDLHWPQ 223 (249)
Q Consensus 216 ~l~l~~~~ 223 (249)
++++++|+
T Consensus 300 ~L~L~~N~ 307 (312)
T 1wwl_A 300 NLSLKGNP 307 (312)
T ss_dssp EEECTTCT
T ss_pred EEeccCCC
Confidence 99999996
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.9e-22 Score=167.92 Aligned_cols=89 Identities=21% Similarity=0.172 Sum_probs=51.5
Q ss_pred ccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCcccccc
Q 039403 132 PMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWC 210 (249)
Q Consensus 132 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~ 210 (249)
..++.+++|+.|++++|.+.+.. +.. +..+++|++|++++ +.++++ +..+..+++|+.|++++|.+.+..|..+..
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~-~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKID-DNA-FWGLTHLLKLNLSQ-NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEEC-TTT-TTTCTTCCEEECCS-SCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred hhcccCCCCCEEECCCCcccccC-hhH-hcCcccCCEEECCC-CccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 33445555666666555554322 334 55566666666666 445544 344556666666666666665544556666
Q ss_pred CcCccEEEccCCc
Q 039403 211 IKSLRKLDLHWPQ 223 (249)
Q Consensus 211 l~~L~~l~l~~~~ 223 (249)
+++|+++++++|.
T Consensus 370 l~~L~~L~L~~N~ 382 (455)
T 3v47_A 370 LPNLKELALDTNQ 382 (455)
T ss_dssp CTTCCEEECCSSC
T ss_pred cccccEEECCCCc
Confidence 6677777776664
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-22 Score=158.32 Aligned_cols=211 Identities=17% Similarity=0.085 Sum_probs=169.7
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcc-hhcCCCcccCeEEEecCcccccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTP-DILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
+..+.++|..+. ++|++| +++| .+.+..+..++.+++|++|++.++. ..++ ..+.++++|++|++++|. ...
T Consensus 16 ~~~l~~ip~~l~--~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~ 90 (276)
T 2z62_A 16 ELNFYKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--IQS 90 (276)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CCE
T ss_pred CCCccccCCCCC--CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc--cCc
Confidence 567888998775 589999 8888 7776666688999999999976666 5444 468899999999999996 666
Q ss_pred chhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCC-CCcccccCCCCCceEEeeccccCCceeee
Q 039403 80 GVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELME-DPMPMLERLPRLQVLKLKRNSYLGRKLAC 157 (249)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 157 (249)
..+..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|.+++ ..+..+..+++|++|++++|.+.+.. +.
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~-~~ 167 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETN-LASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CT 167 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTT-CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GG
T ss_pred cChhhhcCCccccEEECCCCC-ccccCchhccc-CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC-HH
Confidence 566788999999999999977 666554 5777 8999999999999976 35788999999999999999886532 33
Q ss_pred eCCCCCCccc----EEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 158 AGSGGFPELK----VLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 158 ~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
. +..+++|+ .+++++ +.++.++.......+|+.|++++|.+.+..+..+..+++|+++++++|+
T Consensus 168 ~-~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 168 D-LRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp G-GHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred H-hhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 3 44445555 899999 7888888777667789999999999775434456889999999999774
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=165.44 Aligned_cols=210 Identities=20% Similarity=0.125 Sum_probs=175.1
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CC-cchhcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SC-TPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++..++++|..+. ++++.| +++| .+.+..+..++++++|++|++.++. .. .+..+.++++|++|++++|. ..
T Consensus 62 ~~~~l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~ 136 (452)
T 3zyi_A 62 TRRGLSEVPQGIP--SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW--LT 136 (452)
T ss_dssp CSSCCSSCCSCCC--TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CS
T ss_pred CCCCcCccCCCCC--CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc--CC
Confidence 4567899998775 699999 9888 8887778889999999999966666 44 44678899999999999996 55
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCC-cccccCCCCCceEEeeccccCCceee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDP-MPMLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
...+..+..+++|+.|+++++. ++.+.. .+.. +++|+.|++++|...+.. +..+..+++|++|++++|.+.+.
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~-l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--- 211 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNR-VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--- 211 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTT-CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---
T ss_pred ccChhhhcccCCCCEEECCCCC-cceeCHhHHhc-CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---
Confidence 5555668899999999999988 887775 6778 999999999995443333 34688899999999999998762
Q ss_pred eeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 157 CAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 157 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.. +..+++|+.|++++ |.++.+ +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 212 ~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 212 PN-LTPLVGLEELEMSG-NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp CC-CTTCTTCCEEECTT-SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cc-ccccccccEEECcC-CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 34 77899999999999 677755 6678899999999999999887667788999999999999995
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-22 Score=164.45 Aligned_cols=212 Identities=15% Similarity=0.056 Sum_probs=170.5
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
+++.++++|..+. ++|++| +++| .+.+..+..++.+++|++|++.++. ..+ +..+.++++|++|++++|. ..
T Consensus 39 ~~~~l~~iP~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~ 113 (353)
T 2z80_A 39 SSGSLNSIPSGLT--EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY--LS 113 (353)
T ss_dssp CSTTCSSCCTTCC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CS
T ss_pred CCCCccccccccc--ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc--CC
Confidence 5788999999775 599999 8888 7775555589999999999966666 444 4568999999999999996 55
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEccc-CCCCCcccccCCCCCceEEeeccccCCcee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTE-LMEDPMPMLERLPRLQVLKLKRNSYLGRKL 155 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 155 (249)
...+..+..+++|++|+++++. +..++. .+.. +++|+.|++++|. ++...+..+..+++|++|++++|.+.+..
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~- 190 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSH-LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE- 190 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTT-CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-
T ss_pred cCCHhHhCCCccCCEEECCCCC-CcccCchhhhcc-CCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC-
Confidence 4444558999999999999987 777765 5778 9999999999994 55444577889999999999999887644
Q ss_pred eeeCCCCCCcccEEEeccCCcccceeccCc-ccccccceeeccCcCcCC-------------------------------
Q 039403 156 ACAGSGGFPELKVLHLKSMYWLDEWTMGAG-ALPKLESLIVNPCAYLRK------------------------------- 203 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~------------------------------- 203 (249)
+.. +..+++|++|++++ +.++.++..+. .+++|+.|++++|.+.+.
T Consensus 191 ~~~-l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 191 PKS-LKSIQNVSHLILHM-KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp TTT-TTTCSEEEEEEEEC-SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred HHH-HhccccCCeecCCC-CccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 556 88899999999999 66777665543 578999999999987652
Q ss_pred CccccccCcCccEEEccCCc
Q 039403 204 LPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 204 l~~~l~~l~~L~~l~l~~~~ 223 (249)
+|+.+..+++|+++++++|.
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSC
T ss_pred hHHHHhcccCCCEEECCCCC
Confidence 23445677888888888885
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=159.31 Aligned_cols=213 Identities=18% Similarity=0.177 Sum_probs=119.1
Q ss_pred CCCCccccch-hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPE-DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~-~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
+++.++.+|+ .+..+++|++| +++| .+.+..|..++.+++|++|++.++. ..+|..+. ++|++|++++|. ..
T Consensus 62 ~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~--i~ 136 (332)
T 2ft3_A 62 QNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR--IR 136 (332)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC--CC
T ss_pred CCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc--cC
Confidence 4555666643 56666666666 6555 5554445566666666666644444 44554443 566666666664 33
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee---cCCC-------------------CCCCccEEEEEcccCCCCCcccccC
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL---SEYQ-------------------FPPSLIQLSLSNTELMEDPMPMLER 136 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l---~~~~-------------------~~~~L~~L~l~~~~~~~~~~~~~~~ 136 (249)
...+..+..+++|+.|+++++. +..... .+.. ..++|+.|++++|.+++..+..+..
T Consensus 137 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 215 (332)
T 2ft3_A 137 KVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLR 215 (332)
T ss_dssp CCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTT
T ss_pred ccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcC
Confidence 3333456677777777777644 321110 1111 0135556666666655444455666
Q ss_pred CCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCcccccc------
Q 039403 137 LPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWC------ 210 (249)
Q Consensus 137 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~------ 210 (249)
+++|+.|++++|.+.+.. +.. +..+++|++|++++ +.++.+|..+..+++|+.|++++|.+.+.-+..+..
T Consensus 216 l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 292 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIE-NGS-LSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292 (332)
T ss_dssp CTTCSCCBCCSSCCCCCC-TTG-GGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred CCCCCEEECCCCcCCcCC-hhH-hhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccc
Confidence 666666666666665432 334 55566677777766 456666666666667777777776654322222222
Q ss_pred CcCccEEEccCCc
Q 039403 211 IKSLRKLDLHWPQ 223 (249)
Q Consensus 211 l~~L~~l~l~~~~ 223 (249)
.+.++.+++++|+
T Consensus 293 ~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 293 RAYYNGISLFNNP 305 (332)
T ss_dssp SCCBSEEECCSSS
T ss_pred cccccceEeecCc
Confidence 3456666776665
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-21 Score=169.78 Aligned_cols=214 Identities=18% Similarity=0.176 Sum_probs=117.5
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcch-hcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPD-ILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~-~l~~l~~L~~L~l~~~~~~ 76 (249)
++++.++++|+.+..+++|++| +.+| .+.+..|..++.+++|++|++.++. ..++. .+..+++|++|++++|.
T Consensus 285 l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-- 361 (606)
T 3t6q_A 285 LTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-- 361 (606)
T ss_dssp CTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC--
T ss_pred ccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc--
Confidence 4577788888888888888888 7777 6665556666667777777754444 23433 25566666666666664
Q ss_pred cccch--hhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCc-ccccCCCCCceEEeeccccCC
Q 039403 77 YHSGV--SKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPM-PMLERLPRLQVLKLKRNSYLG 152 (249)
Q Consensus 77 ~~~~~--~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~ 152 (249)
..... +..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+
T Consensus 362 l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 439 (606)
T 3t6q_A 362 IETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKE-CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439 (606)
T ss_dssp CCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTT-CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT
T ss_pred cccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcC-CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC
Confidence 33222 4445556666666666544 444332 3444 5555555555555543322 224555555555555555543
Q ss_pred ceeeeeCCCCCCcccEEEeccCCcccc--ee--ccCcccccccceeeccCcCcCCCccccccCcCccEEEccCC
Q 039403 153 RKLACAGSGGFPELKVLHLKSMYWLDE--WT--MGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 153 ~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~--~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~ 222 (249)
.. +.. +..+++|++|++++ +.+++ ++ ..+..+++|+.|++++|.+.+..|..+..+++|+++++++|
T Consensus 440 ~~-~~~-~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 440 SS-EQL-FDGLPALQHLNLQG-NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp TC-TTT-TTTCTTCCEEECTT-CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cC-HHH-HhCCCCCCEEECCC-CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 32 333 44555555555555 33331 11 22445555555555555554444445555555555555555
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-21 Score=163.34 Aligned_cols=210 Identities=18% Similarity=0.136 Sum_probs=174.6
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CC-cchhcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SC-TPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
.+..++++|..+. ++++.| +.+| .+....+..+.++++|++|++.++. .. .+..+.++++|+.|++++|. ..
T Consensus 51 ~~~~l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~--l~ 125 (440)
T 3zyj_A 51 VRKNLREVPDGIS--TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR--LT 125 (440)
T ss_dssp CSCCCSSCCSCCC--TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC--CS
T ss_pred CCCCcCcCCCCCC--CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc--CC
Confidence 4678899998876 799999 8888 8877777889999999999976666 44 44678899999999999996 55
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCC-CcccccCCCCCceEEeeccccCCceee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMED-PMPMLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
...+..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|..... .+..+..+++|++|++++|.+.. .
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~-l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~ 200 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNR-IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE---I 200 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTT-CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS---C
T ss_pred eeCHhHhhccccCceeeCCCCc-ccccCHHHhhh-CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc---c
Confidence 4445578999999999999988 887775 6778 99999999999644333 33468889999999999998875 2
Q ss_pred eeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 157 CAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 157 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.. +..+++|+.|++++ |.++.+ +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 201 ~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 201 PN-LTPLIKLDELDLSG-NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp CC-CTTCSSCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred cc-cCCCcccCEEECCC-CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 34 77899999999999 677765 5678899999999999999877667788899999999999995
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6e-21 Score=156.05 Aligned_cols=210 Identities=16% Similarity=0.161 Sum_probs=169.4
Q ss_pred CCCCCcccc-chhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQS-PEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~l-p~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~ 76 (249)
++++.++.+ |..++.+++|++| +++| .+. .+|..+. ++|++|++.++. ..+ +..+.++++|+.|++++|.
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-- 156 (330)
T 1xku_A 83 LINNKISKISPGAFAPLVKLERLYLSKN-QLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-- 156 (330)
T ss_dssp CCSSCCCCBCTTTTTTCTTCCEEECCSS-CCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC--
T ss_pred CCCCcCCeeCHHHhcCCCCCCEEECCCC-cCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc--
Confidence 467889888 7889999999999 8888 766 5676655 799999966666 444 4468899999999999996
Q ss_pred cc--cchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCce
Q 039403 77 YH--SGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRK 154 (249)
Q Consensus 77 ~~--~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 154 (249)
.. +..+..+..+++|+.|+++++. +..++..+ .++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 157 l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 157 LKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232 (330)
T ss_dssp CCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC
T ss_pred CCccCcChhhccCCCCcCEEECCCCc-cccCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC
Confidence 43 2456778999999999999977 77654322 468999999999998666788999999999999999887543
Q ss_pred eeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccc------cCcCccEEEccCCc
Q 039403 155 LACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELW------CIKSLRKLDLHWPQ 223 (249)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~------~l~~L~~l~l~~~~ 223 (249)
+.. +..+++|++|++++ +.++.+|..+..+++|+.|++++|.+.+.-+..+. ..+.++.+++++|+
T Consensus 233 -~~~-~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 233 -NGS-LANTPHLRELHLNN-NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp -TTT-GGGSTTCCEEECCS-SCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred -hhh-ccCCCCCCEEECCC-CcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 345 67789999999999 68889999899999999999999997653223332 24778999999997
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.9e-22 Score=178.82 Aligned_cols=210 Identities=16% Similarity=0.073 Sum_probs=141.6
Q ss_pred CCccccchhhhhcccccee-eecCcccCC-----------------CCCCcCC--CCccccccccccCC--CCcchhcCC
Q 039403 4 SYIDQSPEDIWMMQKLMHL-NFGCITLPA-----------------PPKNYFS--SLKNLIFISALHPS--SCTPDILGR 61 (249)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L-l~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~--~~~~~~l~~ 61 (249)
+.++.+|+.++++++|+.| +++| .+.+ .+|..++ ++++|++|++.++. +.+|..+++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 4455577777777777777 7777 6665 2777776 77777777755555 567777777
Q ss_pred CcccCeEEEecCcccccc-chhhhhcCCC-------CCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCc
Q 039403 62 LPSVQTLRISGNLSCYHS-GVSKSLCELH-------KLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPM 131 (249)
Q Consensus 62 l~~L~~L~l~~~~~~~~~-~~~~~l~~l~-------~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~ 131 (249)
+++|+.|++++|. ...+ .+|..+.+++ +|+.|+++++. +..++. .+.. +++|+.|++++|.++ ..|
T Consensus 514 L~~L~~L~Ls~N~-~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~-L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 514 LPELQSLNIACNR-GISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQK-MVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp CSSCCEEECTTCT-TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTT-CTTCCEEECTTSCCC-BCC
T ss_pred CCCCCEEECcCCC-CcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhc-CCCCCEEECCCCCcc-cch
Confidence 7777777777773 0222 3565554443 77777777776 666655 5667 777888888777776 555
Q ss_pred ccccCCCCCceEEeeccccCCceeeeeCCCCCCc-ccEEEeccCCcccceeccCcccc--cccceeeccCcCcCCCcc--
Q 039403 132 PMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPE-LKVLHLKSMYWLDEWTMGAGALP--KLESLIVNPCAYLRKLPE-- 206 (249)
Q Consensus 132 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~l~~-- 206 (249)
.++.+++|+.|++++|.+. .. +.. +..+++ |+.|++++ +.++.+|..+..++ +|+.|++++|.+.+.+|.
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~l-p~~-l~~l~~~L~~L~Ls~-N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~ 664 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EI-PED-FCAFTDQVEGLGFSH-NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CC-CTT-SCEECTTCCEEECCS-SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred -hhcCCCcceEEECcCCccc-cc-hHH-HhhccccCCEEECcC-CCCCcCchhhhccccCCCCEEECcCCcCCCccccch
Confidence 6777777888888777766 33 555 666676 88888877 55667776665544 378888888877664442
Q ss_pred -ccc--cCcCccEEEccCCc
Q 039403 207 -ELW--CIKSLRKLDLHWPQ 223 (249)
Q Consensus 207 -~l~--~l~~L~~l~l~~~~ 223 (249)
.+. .+++|+.|++++|.
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSC
T ss_pred hhhccccCCCcCEEEccCCc
Confidence 222 33478888888874
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-21 Score=169.93 Aligned_cols=209 Identities=18% Similarity=0.182 Sum_probs=157.3
Q ss_pred CCCCCccccchhhhhccc-ccee-eecCcccCCCCCCcCCCCc--cccccccccCC--CCcchhcC-------CCcccCe
Q 039403 1 MPSSYIDQSPEDIWMMQK-LMHL-NFGCITLPAPPKNYFSSLK--NLIFISALHPS--SCTPDILG-------RLPSVQT 67 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~-L~~L-l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~--~~~~~~l~-------~l~~L~~ 67 (249)
++++.++.+|+.+..+++ |++| +++| .+. .+|..++.+. +|++|++.++. +..|..+. .+++|+.
T Consensus 360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N-~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 360 LAYNQITEIPANFCGFTEQVENLSFAHN-KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp CCSSEEEECCTTSEEECTTCCEEECCSS-CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred CCCCccccccHhhhhhcccCcEEEccCC-cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 456777778888888887 8888 7777 666 6777666644 78888855555 45566666 6778888
Q ss_pred EEEecCccccccchhh-hhcCCCCCcEEEEecCCCceeeeecC-C-------CCCCCccEEEEEcccCCCCCccccc--C
Q 039403 68 LRISGNLSCYHSGVSK-SLCELHKLECLKLVNESKLSRMVLSE-Y-------QFPPSLIQLSLSNTELMEDPMPMLE--R 136 (249)
Q Consensus 68 L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~L~~l~l~~-~-------~~~~~L~~L~l~~~~~~~~~~~~~~--~ 136 (249)
|++++|. .. .+|. .+..+++|+.|+++++. +..++..+ . + +++|+.|++++|.++ ..|..+. .
T Consensus 438 L~Ls~N~--l~-~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~~~ 511 (636)
T 4eco_A 438 INLSNNQ--IS-KFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKN-TYLLTSIDLRFNKLT-KLSDDFRATT 511 (636)
T ss_dssp EECCSSC--CC-SCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTT-GGGCCEEECCSSCCC-BCCGGGSTTT
T ss_pred EECcCCc--cC-cCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccc-cCCccEEECcCCcCC-ccChhhhhcc
Confidence 8888885 44 4443 34568888888888877 77555422 2 2 238999999999988 6777776 8
Q ss_pred CCCCceEEeeccccCCceeeeeCCCCCCcccEEEecc------CCcccceeccCcccccccceeeccCcCcCCCcccccc
Q 039403 137 LPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKS------MYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWC 210 (249)
Q Consensus 137 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~ 210 (249)
+++|+.|++++|.+.+ . +.. +..+++|+.|++++ +...+.+|..+..+++|+.|++++|.+ +.+|..+.
T Consensus 512 l~~L~~L~Ls~N~l~~-i-p~~-~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~- 586 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSK-F-PTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT- 586 (636)
T ss_dssp CTTCCEEECCSSCCSS-C-CCG-GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-
T ss_pred CCCcCEEECCCCCCCC-c-Chh-hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-
Confidence 9999999999999887 3 666 77899999999954 222447888888999999999999997 67887765
Q ss_pred CcCccEEEccCCc
Q 039403 211 IKSLRKLDLHWPQ 223 (249)
Q Consensus 211 l~~L~~l~l~~~~ 223 (249)
++|+++++++|+
T Consensus 587 -~~L~~L~Ls~N~ 598 (636)
T 4eco_A 587 -PNISVLDIKDNP 598 (636)
T ss_dssp -TTCCEEECCSCT
T ss_pred -CcCCEEECcCCC
Confidence 899999999994
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-21 Score=154.57 Aligned_cols=195 Identities=18% Similarity=0.143 Sum_probs=164.3
Q ss_pred CCCCCccccch-hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCc-chhcCCCcccCeEEEecCcc
Q 039403 1 MPSSYIDQSPE-DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCT-PDILGRLPSVQTLRISGNLS 75 (249)
Q Consensus 1 l~~~~l~~lp~-~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~l~~l~~L~~L~l~~~~~ 75 (249)
++++.++.+|. .+..+++|++| +++| .+.+..+..++.+++|++|++.++. ..+ +..+..+++|++|++++|.
T Consensus 39 l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~- 116 (285)
T 1ozn_A 39 LHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG- 116 (285)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-
T ss_pred eeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-
Confidence 46888999985 58999999999 8888 8877778889999999999977664 444 6678899999999999997
Q ss_pred ccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCce
Q 039403 76 CYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRK 154 (249)
Q Consensus 76 ~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 154 (249)
.....+..+..+++|++|+++++. +..+.. .+.. +++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 117 -l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (285)
T 1ozn_A 117 -LQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRD-LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193 (285)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred -CCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhcc-CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC
Confidence 666567788999999999999987 777665 4778 999999999999998544456889999999999999987644
Q ss_pred eeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCC
Q 039403 155 LACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRK 203 (249)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~ 203 (249)
+.. +..+++|+.|++++ +.++.++. .+..+++|+.|++++|++..+
T Consensus 194 -~~~-~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 194 -PHA-FRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp -TTT-TTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred -HhH-ccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 556 78899999999999 67776664 477899999999999997653
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.7e-21 Score=159.25 Aligned_cols=212 Identities=17% Similarity=0.155 Sum_probs=141.3
Q ss_pred CCCCccccchh-hhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCcccc
Q 039403 2 PSSYIDQSPED-IWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 2 ~~~~l~~lp~~-i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
+++.++++|.. +..+++|++| +.+| .+....+..++.+++|++|++.++. ..+ +..++++++|++|++++|. .
T Consensus 53 ~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l 129 (390)
T 3o6n_A 53 KNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND--L 129 (390)
T ss_dssp ESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--C
T ss_pred cCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc--c
Confidence 46788999987 6889999999 8888 7776666789999999999976666 444 4568899999999999995 4
Q ss_pred ccchhh-hhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCccc----------------------
Q 039403 78 HSGVSK-SLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPM---------------------- 133 (249)
Q Consensus 78 ~~~~~~-~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~---------------------- 133 (249)
. .+|. .+..+++|++|+++++. +..+.. .+.. +++|+.|++++|.+++.....
T Consensus 130 ~-~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 206 (390)
T 3o6n_A 130 S-SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQA-TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA 206 (390)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSS-CTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSS
T ss_pred C-cCCHHHhcCCCCCcEEECCCCc-cCccChhhccC-CCCCCEEECCCCcCCccccccccccceeecccccccccCCCCc
Confidence 4 4544 46899999999999977 776654 4667 788888888888765322111
Q ss_pred -------------------------------------ccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCc
Q 039403 134 -------------------------------------LERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYW 176 (249)
Q Consensus 134 -------------------------------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 176 (249)
+..+++|+.|++++|.+.+.. +.. +..+++|++|++++ +.
T Consensus 207 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~-~~~l~~L~~L~L~~-n~ 283 (390)
T 3o6n_A 207 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM-YHP-FVKMQRLERLYISN-NR 283 (390)
T ss_dssp CSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE-SGG-GTTCSSCCEEECCS-SC
T ss_pred ceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcC-hhH-ccccccCCEEECCC-Cc
Confidence 223344444444444443322 333 44555555555555 44
Q ss_pred ccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 177 LDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 177 ~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
++.++.....+++|+.|++++|.+. .+|..+..+++|+++++++|.
T Consensus 284 l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 284 LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred CcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCc
Confidence 5555554455555555555555543 344445555556666665554
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-21 Score=176.56 Aligned_cols=202 Identities=13% Similarity=0.100 Sum_probs=167.9
Q ss_pred cchhhh--hcccccee-eecCcccCCCCCCcCCCCccccccccccCC---C-CcchhcCCCc-------ccCeEEEecCc
Q 039403 9 SPEDIW--MMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS---S-CTPDILGRLP-------SVQTLRISGNL 74 (249)
Q Consensus 9 lp~~i~--~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~-~~~~~l~~l~-------~L~~L~l~~~~ 74 (249)
+|+.++ .+++|+.| +++| .+.+.+|..++++++|++|++.++. + .+|..+++++ +|+.|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N-~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNC-PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESC-TTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCC-CCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 999988 99999999 9998 8888999999999999999976664 2 5777666555 99999999996
Q ss_pred cccccchhh--hhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCC-CceEEeeccccC
Q 039403 75 SCYHSGVSK--SLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPR-LQVLKLKRNSYL 151 (249)
Q Consensus 75 ~~~~~~~~~--~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~ 151 (249)
.. .+|. .+.++++|+.|+++++. +..++ .+.. +++|+.|++++|.+. ..|..+..+++ |+.|++++|.+.
T Consensus 560 --L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~-L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 560 --LE-EFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGT-NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp --CC-BCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCT-TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred --CC-ccCChhhhhcCCCCCEEECCCCC-cccch-hhcC-CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 55 7887 89999999999999988 88777 7888 999999999999998 78888999999 999999999987
Q ss_pred CceeeeeCCCCCC--cccEEEeccCCccc-ceec---cCc--ccccccceeeccCcCcCCCccccc-cCcCccEEEccCC
Q 039403 152 GRKLACAGSGGFP--ELKVLHLKSMYWLD-EWTM---GAG--ALPKLESLIVNPCAYLRKLPEELW-CIKSLRKLDLHWP 222 (249)
Q Consensus 152 ~~~~~~~~~~~~~--~L~~L~l~~~~~~~-~~~~---~~~--~~~~L~~L~l~~~~~~~~l~~~l~-~l~~L~~l~l~~~ 222 (249)
.. +.. +...+ +|+.|++++ +.++ .+|. ... .+++|+.|++++|.+. .+|..+. .+++|++|++++|
T Consensus 633 -~l-p~~-~~~~~~~~L~~L~Ls~-N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 633 -YI-PNI-FNAKSVYVMGSVDFSY-NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp -SC-CSC-CCTTCSSCEEEEECCS-SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC
T ss_pred -cC-chh-hhccccCCCCEEECcC-CcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC
Confidence 33 555 55544 499999999 5555 3332 222 3458999999999977 6777654 7899999999999
Q ss_pred c
Q 039403 223 Q 223 (249)
Q Consensus 223 ~ 223 (249)
.
T Consensus 708 ~ 708 (876)
T 4ecn_A 708 L 708 (876)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-21 Score=171.81 Aligned_cols=209 Identities=21% Similarity=0.112 Sum_probs=91.4
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCCCCcchhcCCCcccCeEEEecCccccccc-
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPSSCTPDILGRLPSVQTLRISGNLSCYHSG- 80 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~- 80 (249)
++.++.+| .+..+++|++| +.+| .+ +.+| .+ .+++|++|++.++....+..+..+++|+.|++++|. ....
T Consensus 294 ~~~~~~l~-~l~~~~~L~~L~l~~n-~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~--l~~~~ 366 (606)
T 3vq2_A 294 GVSIKYLE-DVPKHFKWQSLSIIRC-QL-KQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNA--LSFSG 366 (606)
T ss_dssp SCCCCCCC-CCCTTCCCSEEEEESC-CC-SSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSC--EEEEE
T ss_pred Cccchhhh-hccccccCCEEEcccc-cC-cccc-cC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCc--cCCCc
Confidence 45556666 56666666666 6665 44 3455 23 555555555333321111123344444444444442 2111
Q ss_pred -hhhhhcCCCCCcEEEEecCCCceeeee-------------------------cCCCCCCCccEEEEEcccCCCCCcccc
Q 039403 81 -VSKSLCELHKLECLKLVNESKLSRMVL-------------------------SEYQFPPSLIQLSLSNTELMEDPMPML 134 (249)
Q Consensus 81 -~~~~l~~l~~L~~L~l~~~~~L~~l~l-------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~ 134 (249)
.+..+..+++|+.|+++++. +..++. .+.. +++|+.|++++|.+.+..+..+
T Consensus 367 ~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~ 444 (606)
T 3vq2_A 367 CCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYLDISYTNTKIDFDGIF 444 (606)
T ss_dssp ECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTT-CTTCCEEECTTSCCEECCTTTT
T ss_pred chhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhc-cccCCEEECcCCCCCccchhhh
Confidence 12333334444444433322 111111 2333 4445555555554443344444
Q ss_pred cCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCccccccCcC
Q 039403 135 ERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWCIKS 213 (249)
Q Consensus 135 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~ 213 (249)
..+++|+.|++++|.+.+...+.. ++.+++|++|++++ +.++.+ +..+..+++|+.|++++|.+.+..|..+..+++
T Consensus 445 ~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 522 (606)
T 3vq2_A 445 LGLTSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDLSK-CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522 (606)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred cCCCCCCEEECCCCcCCCcchHHh-hccCCCCCEEECCC-CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence 455555555555554444322333 44445555555554 233322 233444444444444444444333444444444
Q ss_pred ccEEEccCC
Q 039403 214 LRKLDLHWP 222 (249)
Q Consensus 214 L~~l~l~~~ 222 (249)
|+++++++|
T Consensus 523 L~~L~l~~N 531 (606)
T 3vq2_A 523 LSTLDCSFN 531 (606)
T ss_dssp CCEEECTTS
T ss_pred CCEEECCCC
Confidence 444444444
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-21 Score=166.94 Aligned_cols=213 Identities=17% Similarity=0.127 Sum_probs=154.4
Q ss_pred CCCCccccchh-hhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcc-hhcCCCcccCeEEEecCcccc
Q 039403 2 PSSYIDQSPED-IWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTP-DILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 2 ~~~~l~~lp~~-i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~ 77 (249)
+++.++.+|+. +..+++|+.| +++| .+.+..+..++.+++|++|++.++. ..++ ..++++++|+.|++++|. .
T Consensus 59 ~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l 135 (597)
T 3oja_B 59 KNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND--L 135 (597)
T ss_dssp SSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--C
T ss_pred eCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC--C
Confidence 56788999987 6889999999 9888 8887777789999999999966666 4444 467899999999999996 5
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCC--------------------------
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDP-------------------------- 130 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~-------------------------- 130 (249)
....+..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|.+++..
T Consensus 136 ~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L 213 (597)
T 3oja_B 136 SSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQA-TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 213 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTT-CTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTC
T ss_pred CCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhc-CCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchh
Confidence 54334456899999999999976 665544 4555 666666666666554211
Q ss_pred ---------------------------------cccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcc
Q 039403 131 ---------------------------------MPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWL 177 (249)
Q Consensus 131 ---------------------------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 177 (249)
+..+..+++|+.|++++|.+.+.. +.. ++.+++|+.|++++ +.+
T Consensus 214 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l~~L~~L~Ls~-N~l 290 (597)
T 3oja_B 214 EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM-YHP-FVKMQRLERLYISN-NRL 290 (597)
T ss_dssp SEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE-SGG-GTTCSSCCEEECTT-SCC
T ss_pred heeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCC-HHH-hcCccCCCEEECCC-CCC
Confidence 223445566666666666665543 445 66677777777777 566
Q ss_pred cceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 178 DEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 178 ~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.++.....+++|+.|++++|.+. .+|..+..+++|++|++++|.
T Consensus 291 ~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 291 VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred CCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCC
Confidence 667766666777777777777765 566667777777777777775
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-20 Score=153.59 Aligned_cols=205 Identities=17% Similarity=0.177 Sum_probs=134.4
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++++.++.+| .+..+++|++| +++| .+.. ++. +..+++|++|++.++. ...+..+..+++|++|++++|. ..
T Consensus 95 L~~n~i~~~~-~~~~l~~L~~L~l~~n-~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~--~~ 168 (347)
T 4fmz_A 95 IGTNKITDIS-ALQNLTNLRELYLNED-NISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK--VK 168 (347)
T ss_dssp CCSSCCCCCG-GGTTCTTCSEEECTTS-CCCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC--CC
T ss_pred ccCCcccCch-HHcCCCcCCEEECcCC-cccC-chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC--cC
Confidence 4577788876 57888888888 7777 6553 333 7778888888865554 3334446777777777777774 32
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeee------------e---------cCCCCCCCccEEEEEcccCCCCCcccccCC
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMV------------L---------SEYQFPPSLIQLSLSNTELMEDPMPMLERL 137 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~------------l---------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 137 (249)
. .+. +..+++|+.|+++++. +..+. + .+.. +++|+.|++++|.+++ .+. +..+
T Consensus 169 ~-~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~l~~n~l~~-~~~-~~~l 242 (347)
T 4fmz_A 169 D-VTP-IANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITPVAN-MTRLNSLKIGNNKITD-LSP-LANL 242 (347)
T ss_dssp C-CGG-GGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGG-CTTCCEEECCSSCCCC-CGG-GTTC
T ss_pred C-chh-hccCCCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCchhhc-CCcCCEEEccCCccCC-Ccc-hhcC
Confidence 2 222 6667777777776643 33222 1 2445 6677777777777663 222 6677
Q ss_pred CCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEE
Q 039403 138 PRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKL 217 (249)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l 217 (249)
++|+.|++++|.+.+. .. +..+++|++|++++ +.+++++ .+..+++|+.|++++|.+.+..+..+..+++|+++
T Consensus 243 ~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~l~~-n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI---NA-VKDLTKLKMLNVGS-NQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp TTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCS-SCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred CCCCEEECCCCccCCC---hh-HhcCCCcCEEEccC-CccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 7777777777766542 34 56677777777777 4666553 35667777777777777666556667777777777
Q ss_pred EccCCc
Q 039403 218 DLHWPQ 223 (249)
Q Consensus 218 ~l~~~~ 223 (249)
++++|+
T Consensus 317 ~L~~n~ 322 (347)
T 4fmz_A 317 FLSQNH 322 (347)
T ss_dssp ECCSSS
T ss_pred EccCCc
Confidence 777775
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=162.64 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=67.1
Q ss_pred CCCCCccccc-hhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccc
Q 039403 1 MPSSYIDQSP-EDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 1 l~~~~l~~lp-~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
|+++.++.+| ..+..+++|++| +++| .+.+..|..++.+++|++|++.++. ..+|.. .+++|++|++++|. .
T Consensus 28 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~--l 102 (520)
T 2z7x_B 28 ISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNA--F 102 (520)
T ss_dssp CCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSC--C
T ss_pred CCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCc--c
Confidence 4567777776 467778888888 7777 6666567777778888888855555 556655 67788888888775 4
Q ss_pred cc-chhhhhcCCCCCcEEEEecCC
Q 039403 78 HS-GVSKSLCELHKLECLKLVNES 100 (249)
Q Consensus 78 ~~-~~~~~l~~l~~L~~L~l~~~~ 100 (249)
.+ .+|..++++++|++|+++++.
T Consensus 103 ~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 103 DALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp SSCCCCGGGGGCTTCCEEEEEESS
T ss_pred ccccchhhhccCCcceEEEecCcc
Confidence 44 356777788888888887744
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-21 Score=155.61 Aligned_cols=208 Identities=17% Similarity=0.145 Sum_probs=146.3
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CC-cchhcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SC-TPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
+++.++++|..+. ++++.| +++| .+.+..+..++.+++|++|++.++. .. .|..+.++++|++|++++|. .
T Consensus 41 ~~~~l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l- 114 (332)
T 2ft3_A 41 SDLGLKAVPKEIS--PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH--L- 114 (332)
T ss_dssp CSSCCSSCCSCCC--TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC--C-
T ss_pred CCCCccccCCCCC--CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc--C-
Confidence 4677788887763 688888 7777 6765556678888888888866555 43 46678888888888888884 3
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCC--CCcccccCC------------------
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELME--DPMPMLERL------------------ 137 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l------------------ 137 (249)
..+|..+. ++|++|+++++. +..+.. .+.. +++|+.|++++|.++. ..+..+..+
T Consensus 115 ~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~ 190 (332)
T 2ft3_A 115 VEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSG-LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD 190 (332)
T ss_dssp CSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSS-CSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSS
T ss_pred CccCcccc--ccCCEEECCCCc-cCccCHhHhCC-CccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcc
Confidence 34554443 788888888876 766654 4677 8889999998887742 233333333
Q ss_pred --CCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCccccccCcCc
Q 039403 138 --PRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLPEELWCIKSL 214 (249)
Q Consensus 138 --~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L 214 (249)
++|+.|++++|.+.+.. +.. +..+++|++|++++ +.++.++. .+..+++|+.|++++|.+. .+|..+..+++|
T Consensus 191 ~~~~L~~L~l~~n~i~~~~-~~~-l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L 266 (332)
T 2ft3_A 191 LPETLNELHLDHNKIQAIE-LED-LLRYSKLYRLGLGH-NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL 266 (332)
T ss_dssp SCSSCSCCBCCSSCCCCCC-TTS-STTCTTCSCCBCCS-SCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred ccCCCCEEECCCCcCCccC-HHH-hcCCCCCCEEECCC-CcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccC
Confidence 34555555555554432 334 66777888888888 56665554 5677888888888888866 677778888888
Q ss_pred cEEEccCCc
Q 039403 215 RKLDLHWPQ 223 (249)
Q Consensus 215 ~~l~l~~~~ 223 (249)
+++++++|.
T Consensus 267 ~~L~l~~N~ 275 (332)
T 2ft3_A 267 QVVYLHTNN 275 (332)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCC
Confidence 888888885
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.4e-21 Score=167.12 Aligned_cols=206 Identities=15% Similarity=0.097 Sum_probs=141.2
Q ss_pred CCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccch
Q 039403 4 SYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGV 81 (249)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (249)
+.+...+..+..+++|+.| +.++ .+. .+| .+..+++|++|++.++. +.+| .+ .+++|+.|++++|. .....
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~-~~~-~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~--~~~~~ 344 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGV-SIK-YLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNK--GSISF 344 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESC-CCC-CCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCS--SCEEC
T ss_pred ccccccccccccCCCCCEEEecCc-cch-hhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCc--Cccch
Confidence 3444444448999999999 8888 664 566 78999999999977777 7787 45 89999999999995 43333
Q ss_pred hhhhcCCCCCcEEEEecCCCceeee---ecCCCCCCCccEEEEEcccCC-----------------------CCCc-ccc
Q 039403 82 SKSLCELHKLECLKLVNESKLSRMV---LSEYQFPPSLIQLSLSNTELM-----------------------EDPM-PML 134 (249)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~L~~l~---l~~~~~~~~L~~L~l~~~~~~-----------------------~~~~-~~~ 134 (249)
.+..+++|+.|+++++. +.... ..+.. +++|+.|++++|.+. +..+ ..+
T Consensus 345 --~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 345 --KKVALPSLSYLDLSRNA-LSFSGCCSYSDLG-TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp --CCCCCTTCCEEECCSSC-EEEEEECCHHHHC-CSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred --hhccCCCCCEEECcCCc-cCCCcchhhhhcc-CCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhh
Confidence 56789999999999977 66653 24445 566666666665543 2222 234
Q ss_pred cCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccc--eeccCcccccccceeeccCcCcCCCccccccCc
Q 039403 135 ERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDE--WTMGAGALPKLESLIVNPCAYLRKLPEELWCIK 212 (249)
Q Consensus 135 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~ 212 (249)
..+++|+.|++++|.+.+.. +.. +..+++|++|++++ +.+++ +|..+..+++|+.|++++|.+.+..|..+..++
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~-~~~-~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDF-DGI-FLGLTSLNTLKMAG-NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp TTCTTCCEEECTTSCCEECC-TTT-TTTCTTCCEEECTT-CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hccccCCEEECcCCCCCccc-hhh-hcCCCCCCEEECCC-CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 44555555555555544322 334 55666777777776 44442 566667777788888888877665666677788
Q ss_pred CccEEEccCCc
Q 039403 213 SLRKLDLHWPQ 223 (249)
Q Consensus 213 ~L~~l~l~~~~ 223 (249)
+|+++++++|.
T Consensus 498 ~L~~L~Ls~N~ 508 (606)
T 3vq2_A 498 RLQLLNMSHNN 508 (606)
T ss_dssp TCCEEECCSSC
T ss_pred cCCEEECCCCc
Confidence 88888888774
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-20 Score=146.91 Aligned_cols=176 Identities=20% Similarity=0.208 Sum_probs=91.4
Q ss_pred ccccccccccCC-CCcch-hcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCcc
Q 039403 41 KNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLI 117 (249)
Q Consensus 41 ~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~ 117 (249)
+++++|++.++. ..++. .+.++++|++|++++|. .....+..+..+++|+.|+++++. +..+.. .+.. +++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~ 112 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK--LQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQ-LVNLA 112 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC--CSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTT-CSSCC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc--cCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHccc-ccCCC
Confidence 455555544433 33332 45555566666665553 322222334555566666665554 444443 3344 55666
Q ss_pred EEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceecc-Ccccccccceeec
Q 039403 118 QLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMG-AGALPKLESLIVN 196 (249)
Q Consensus 118 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~ 196 (249)
+|++++|.++...+..+..+++|++|++++|.+.+.. +.. +..+++|++|++++ +.++.++.. +..+++|++|+++
T Consensus 113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~-~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-KGV-FDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTT-TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC-HhH-ccCCcccceeEecC-CcCcEeChhHhccCCCcCEEECC
Confidence 6666666655444444555666666666666554322 223 44556666666665 445544432 4455666666666
Q ss_pred cCcCcCCCccccccCcCccEEEccCCc
Q 039403 197 PCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 197 ~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+|.+.+..+..+..+++|+.+++++|+
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 190 NNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCcCCHHHhccccCCCEEEecCCC
Confidence 666543222335556666666666553
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-21 Score=166.21 Aligned_cols=211 Identities=21% Similarity=0.173 Sum_probs=144.4
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCc--------------------CCCCccccccccccCC-CCc---ch
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNY--------------------FSSLKNLIFISALHPS-SCT---PD 57 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~--------------------~~~l~~L~~L~l~~~~-~~~---~~ 57 (249)
++.++.+|..+..+ +|++| +.+| .+. .+|.. ...+++|++|++.++. ... +.
T Consensus 291 ~~~l~~l~~~~~~~-~L~~L~l~~n-~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 367 (570)
T 2z63_A 291 SVTIERVKDFSYNF-GWQHLELVNC-KFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367 (570)
T ss_dssp SCEECSCCBCCSCC-CCSEEEEESC-BCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEH
T ss_pred CccchhhhhhhccC-CccEEeeccC-ccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccc
Confidence 45556666666655 66666 5555 443 33321 1345556666644333 221 44
Q ss_pred hcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCccccc
Q 039403 58 ILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLE 135 (249)
Q Consensus 58 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 135 (249)
.+..+++|+.|++++|. ... ++..+..+++|+.|+++++. +..... .+.. +++|+.|++++|.+.+..+..+.
T Consensus 368 ~~~~~~~L~~L~l~~n~--l~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~ 442 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNG--VIT-MSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFN 442 (570)
T ss_dssp HHHTCSCCCEEECCSCS--EEE-EEEEEETCTTCCEEECTTSE-EESCTTSCTTTT-CTTCCEEECTTSCCEECCTTTTT
T ss_pred cccccCccCEEECCCCc--ccc-ccccccccCCCCEEEccCCc-cccccchhhhhc-CCCCCEEeCcCCcccccchhhhh
Confidence 55566666666666663 222 33336666666666666644 443322 4566 88899999999988766777888
Q ss_pred CCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCccccccCcCc
Q 039403 136 RLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWCIKSL 214 (249)
Q Consensus 136 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L 214 (249)
.+++|+.|++++|.+.+...+.. +..+++|++|++++ +.++++ |..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cCCcCcEEECcCCcCccccchhh-hhcccCCCEEECCC-CccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence 89999999999998874334667 88899999999999 567755 6778899999999999999877666678899999
Q ss_pred cEEEccCCc
Q 039403 215 RKLDLHWPQ 223 (249)
Q Consensus 215 ~~l~l~~~~ 223 (249)
+++++++|+
T Consensus 521 ~~L~l~~N~ 529 (570)
T 2z63_A 521 QKIWLHTNP 529 (570)
T ss_dssp CEEECCSSC
T ss_pred cEEEecCCc
Confidence 999999985
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-21 Score=155.72 Aligned_cols=207 Identities=17% Similarity=0.101 Sum_probs=140.1
Q ss_pred CCccccchh-hhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccc
Q 039403 4 SYIDQSPED-IWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSG 80 (249)
Q Consensus 4 ~~l~~lp~~-i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (249)
+.+.+.+.. ...+++|++| +++| .+.+..|..++.+++|++|++.++. ...++ +..+++|++|++++|. .. .
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~--l~-~ 94 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY--VQ-E 94 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE--EE-E
T ss_pred cchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc--cc-c
Confidence 334433333 2344567777 6666 6665555566677777777754444 32332 6666777777776664 21 1
Q ss_pred hhhh-----------------hcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccc-cCCCCCc
Q 039403 81 VSKS-----------------LCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPML-ERLPRLQ 141 (249)
Q Consensus 81 ~~~~-----------------l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~ 141 (249)
++.. ...+++|+.|+++++. +..+.. .+.. +++|+.|++++|.+++..+..+ ..+++|+
T Consensus 95 l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~-l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 95 LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (317)
T ss_dssp EEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSC-CCSGGGBCTGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred ccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCC-CCCccchhhhc-cCCCCEEECCCCCCCcccHHHHhhccCcCC
Confidence 1100 1124455666665554 444432 5566 7889999999988875555555 4688999
Q ss_pred eEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccC
Q 039403 142 VLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHW 221 (249)
Q Consensus 142 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~ 221 (249)
+|++++|.+.+. .. ...+++|++|++++ +.++.++..+..+++|+.|++++|.+. .+|..+..+++|+.+++++
T Consensus 173 ~L~L~~N~l~~~---~~-~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 173 HLNLQYNFIYDV---KG-QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp EEECTTSCCCEE---EC-CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTT
T ss_pred EEECCCCcCccc---cc-ccccccCCEEECCC-CcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccC
Confidence 999998887652 23 44588999999999 788888888889999999999999976 5788888999999999999
Q ss_pred Cc
Q 039403 222 PQ 223 (249)
Q Consensus 222 ~~ 223 (249)
|+
T Consensus 247 N~ 248 (317)
T 3o53_A 247 NG 248 (317)
T ss_dssp CC
T ss_pred CC
Confidence 96
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.2e-21 Score=163.85 Aligned_cols=204 Identities=16% Similarity=0.112 Sum_probs=143.2
Q ss_pred cccchhhhhcc----cccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccc
Q 039403 7 DQSPEDIWMMQ----KLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSG 80 (249)
Q Consensus 7 ~~lp~~i~~l~----~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (249)
..+|..+..+. +|+.| +++| .+.+..|..++.+++|++|++.++. ...++ +..+++|+.|++++|. .. .
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~--l~-~ 94 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY--VQ-E 94 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE--EE-E
T ss_pred hhhHHHHHHhcccCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc--CC-C
Confidence 44555555554 77777 7777 6666566677777777777755554 33333 6677777777777774 22 1
Q ss_pred hhhh-----------------hcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCccccc-CCCCCc
Q 039403 81 VSKS-----------------LCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLE-RLPRLQ 141 (249)
Q Consensus 81 ~~~~-----------------l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~ 141 (249)
++.. ...+++|+.|+++++. +..+.. .+.. +++|+.|++++|.+++..+..+. .+++|+
T Consensus 95 l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 95 LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp EEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSC-CCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCC-CCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 2110 0124455555555544 444322 5566 78888888888888765666664 688899
Q ss_pred eEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccC
Q 039403 142 VLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHW 221 (249)
Q Consensus 142 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~ 221 (249)
.|++++|.+.+. .. ...+++|+.|++++ |.++.+|..+..+++|+.|++++|.+. .+|..+..++.|+.+++++
T Consensus 173 ~L~Ls~N~l~~~---~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 173 HLNLQYNFIYDV---KG-QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp EEECTTSCCCEE---EC-CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTT
T ss_pred EEecCCCccccc---cc-cccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCC
Confidence 999988887653 23 44688999999999 788888888889999999999999977 4788888899999999999
Q ss_pred Cc
Q 039403 222 PQ 223 (249)
Q Consensus 222 ~~ 223 (249)
|+
T Consensus 247 N~ 248 (487)
T 3oja_A 247 NG 248 (487)
T ss_dssp CC
T ss_pred CC
Confidence 86
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=143.33 Aligned_cols=193 Identities=22% Similarity=0.211 Sum_probs=158.7
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchh-cCCCcccCeEEEecCcccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDI-LGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~~~~ 77 (249)
++++.++++|..+. +++++| +++| .+....+..++.+++|++|++.++. ..++.. +.++++|++|++++|. .
T Consensus 23 ~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~--l 97 (270)
T 2o6q_A 23 CSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK--L 97 (270)
T ss_dssp CTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC--C
T ss_pred ccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc--C
Confidence 35788999998765 689999 8888 7876666689999999999976666 666654 5789999999999996 5
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceee
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
....+..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.. +
T Consensus 98 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~ 174 (270)
T 2o6q_A 98 QALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDS-LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-E 174 (270)
T ss_dssp CCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-T
T ss_pred CcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCc-CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-h
Confidence 55445677899999999999987 777665 4677 999999999999998655566889999999999999887643 4
Q ss_pred eeCCCCCCcccEEEeccCCcccceecc-CcccccccceeeccCcCcCC
Q 039403 157 CAGSGGFPELKVLHLKSMYWLDEWTMG-AGALPKLESLIVNPCAYLRK 203 (249)
Q Consensus 157 ~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~ 203 (249)
.. +..+++|++|++++ +.++.++.. +..+++|+.|++++|++...
T Consensus 175 ~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 175 GA-FDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TT-TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred hH-hccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 45 67889999999999 678877764 66899999999999997553
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.1e-20 Score=147.11 Aligned_cols=197 Identities=19% Similarity=0.165 Sum_probs=154.5
Q ss_pred hhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CC-cchhcCCCcccCeEEEecCccccccchhhhhcCCC
Q 039403 13 IWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SC-TPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELH 89 (249)
Q Consensus 13 i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~ 89 (249)
+.++++++++ ..++ .+. .+|..+. ++++.|++.++. .. .+..+.++++|+.|++++|. ... ++. ...++
T Consensus 6 ~~~l~~l~~l~~~~~-~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~--l~~-~~~-~~~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE--LTK-LQV-DGTLP 77 (290)
T ss_dssp EECSTTCCEEECTTS-CCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC--CCE-EEC-CSCCT
T ss_pred ccccCCccEEECCCC-CCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc--cCc-ccC-CCCCC
Confidence 5667788888 7666 555 5676554 688899966655 43 45678889999999999985 333 333 26788
Q ss_pred CCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEE
Q 039403 90 KLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVL 169 (249)
Q Consensus 90 ~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 169 (249)
+|+.|+++++. +..++..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+.+.. +.. +..+++|+.|
T Consensus 78 ~L~~L~Ls~N~-l~~l~~~~~~-l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L 153 (290)
T 1p9a_G 78 VLGTLDLSHNQ-LQSLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGL-LTPTPKLEKL 153 (290)
T ss_dssp TCCEEECCSSC-CSSCCCCTTT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTT-TTTCTTCCEE
T ss_pred cCCEEECCCCc-CCcCchhhcc-CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-hhh-cccccCCCEE
Confidence 99999999987 8777666777 889999999999998655577888999999999999887533 444 6678899999
Q ss_pred EeccCCcccceeccC-cccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 170 HLKSMYWLDEWTMGA-GALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 170 ~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
++++ |.++.++... ..+++|+.|++++|.+. .+|..+...+.|+.+++++|+
T Consensus 154 ~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 154 SLAN-NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ECTT-SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred ECCC-CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 9998 7788887654 57899999999999976 688888888899999999875
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-20 Score=146.86 Aligned_cols=179 Identities=18% Similarity=0.160 Sum_probs=107.3
Q ss_pred hhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCC
Q 039403 13 IWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHK 90 (249)
Q Consensus 13 i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 90 (249)
...+++|+.| +.++ .+. .+ ..++.+++|++|++.++. ..+ +.+..+++|++|++++|. .....+..+..+++
T Consensus 37 ~~~l~~L~~L~l~~~-~i~-~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 37 QNELNSIDQIIANNS-DIK-SV-QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQ--LQSLPNGVFDKLTN 110 (272)
T ss_dssp HHHHTTCCEEECTTS-CCC-CC-TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSC--CCCCCTTTTTTCTT
T ss_pred cccccceeeeeeCCC-Ccc-cc-cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCc--cCccChhHhcCCcC
Confidence 4566667776 5555 333 22 245666777777754444 333 356667777777777764 44434444566777
Q ss_pred CcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEE
Q 039403 91 LECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVL 169 (249)
Q Consensus 91 L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 169 (249)
|+.|+++++. +..+.. .+.. +++|++|++++|.+++..+..+..+++|+.|++++|.+.+.. +.. ++.+++|++|
T Consensus 111 L~~L~L~~n~-l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~-~~~l~~L~~L 186 (272)
T 3rfs_A 111 LKELVLVENQ-LQSLPDGVFDK-LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-EGV-FDKLTQLKDL 186 (272)
T ss_dssp CCEEECTTSC-CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTT-TTTCTTCCEE
T ss_pred CCEEECCCCc-CCccCHHHhcc-CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC-HHH-hcCCccCCEE
Confidence 7777777665 555443 3455 667777777777666444444566677777777776665432 333 4566677777
Q ss_pred EeccCCcccceecc-CcccccccceeeccCcCcC
Q 039403 170 HLKSMYWLDEWTMG-AGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 170 ~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 202 (249)
++++ +.++.++.. +..+++|+.|++++|++.+
T Consensus 187 ~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 187 RLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp ECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCC-CcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 7776 455544433 4566777777777766543
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.9e-20 Score=159.69 Aligned_cols=94 Identities=20% Similarity=0.195 Sum_probs=67.1
Q ss_pred CCCCCccccc-hhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccc
Q 039403 1 MPSSYIDQSP-EDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 1 l~~~~l~~lp-~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
|+++.++.+| ..+..+++|++| +++| .+.+..|..++.+++|++|++.++. ..+|.. .+++|++|++++|. .
T Consensus 59 Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~--l 133 (562)
T 3a79_B 59 LSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND--F 133 (562)
T ss_dssp CCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC--C
T ss_pred CCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC--c
Confidence 4567777777 467888888888 7777 7766667777788888888855555 556655 67788888888875 4
Q ss_pred cc-chhhhhcCCCCCcEEEEecC
Q 039403 78 HS-GVSKSLCELHKLECLKLVNE 99 (249)
Q Consensus 78 ~~-~~~~~l~~l~~L~~L~l~~~ 99 (249)
.. ..|..+.++++|++|+++++
T Consensus 134 ~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 134 DVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp SBCCCCGGGGGCTTCCEEEEECS
T ss_pred cccCchHhhcccCcccEEecCCC
Confidence 33 23467778888888888774
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.2e-20 Score=167.87 Aligned_cols=91 Identities=15% Similarity=0.085 Sum_probs=56.6
Q ss_pred cccc-chhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchh--cCCCcccCeEEEecCcccccc
Q 039403 6 IDQS-PEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDI--LGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 6 l~~l-p~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~--l~~l~~L~~L~l~~~~~~~~~ 79 (249)
++++ |..+.++++|++| +++| .+.+..|..++.+++|++|++.++. +.++.. +.++++|++|++++|. ...
T Consensus 61 ~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~--l~~ 137 (844)
T 3j0a_A 61 PLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ--IRS 137 (844)
T ss_dssp CCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC--CCC
T ss_pred ccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc--ccc
Confidence 4444 5556667777777 6666 6665566667777777777755544 234443 6677777777777775 433
Q ss_pred ch-hhhhcCCCCCcEEEEecC
Q 039403 80 GV-SKSLCELHKLECLKLVNE 99 (249)
Q Consensus 80 ~~-~~~l~~l~~L~~L~l~~~ 99 (249)
.. +..++++++|+.|+++++
T Consensus 138 ~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 138 LYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CCCCGGGGTCSSCCEEEEESS
T ss_pred cccchhHhhCCCCCEEECCCC
Confidence 32 245677777777777764
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=148.52 Aligned_cols=204 Identities=15% Similarity=0.212 Sum_probs=148.0
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++++.++.+|. +..+++|++| +.+| .....++ .+..+++|++|++.++. ..++. +..+++|+.|++++|. ..
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n-~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~--l~ 190 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGAN-HNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ--IE 190 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTC-TTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC--CC
T ss_pred CcCCcccCchh-hccCCceeEEECCCC-CCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc--cc
Confidence 45777888877 7888888888 7777 4443333 36777777777755544 33333 5666777777777664 22
Q ss_pred cchhh---------------------hhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCC
Q 039403 79 SGVSK---------------------SLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERL 137 (249)
Q Consensus 79 ~~~~~---------------------~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 137 (249)
. ++. .+..+++|+.|+++++. +..+. .+.. +++|+.|++++|.+++ ...+..+
T Consensus 191 ~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~-~~~~-l~~L~~L~l~~n~l~~--~~~~~~l 264 (347)
T 4fmz_A 191 D-ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK-ITDLS-PLAN-LSQLTWLEIGTNQISD--INAVKDL 264 (347)
T ss_dssp C-CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTT-CTTCCEEECCSSCCCC--CGGGTTC
T ss_pred c-cccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc-cCCCc-chhc-CCCCCEEECCCCccCC--ChhHhcC
Confidence 1 111 14555666666666655 55444 3677 8999999999999874 3678899
Q ss_pred CCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc-ceeccCcccccccceeeccCcCcCCCccccccCcCccE
Q 039403 138 PRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD-EWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRK 216 (249)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~ 216 (249)
++|+.|++++|.+.+. .. +..+++|+.|++++ +.++ ..+..+..+++|+.|++++|++.+..| +..+++|++
T Consensus 265 ~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI---SV-LNNLSQLNSLFLNN-NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp TTCCEEECCSSCCCCC---GG-GGGCTTCSEEECCS-SCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred CCcCEEEccCCccCCC---hh-hcCCCCCCEEECcC-CcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 9999999999988763 34 67889999999999 4565 455667789999999999999776433 788999999
Q ss_pred EEccCCc
Q 039403 217 LDLHWPQ 223 (249)
Q Consensus 217 l~l~~~~ 223 (249)
+++++|+
T Consensus 338 L~l~~N~ 344 (347)
T 4fmz_A 338 ADFANQV 344 (347)
T ss_dssp ESSSCC-
T ss_pred eehhhhc
Confidence 9999996
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5.7e-20 Score=147.66 Aligned_cols=190 Identities=20% Similarity=0.132 Sum_probs=160.7
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++++.++++|..+. ++++.| +++| .+.+..+..+..+++|++|++.++. ..++.. ..+++|+.|++++|. .
T Consensus 17 ~~~~~l~~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~--l- 89 (290)
T 1p9a_G 17 CDKRNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ--L- 89 (290)
T ss_dssp CTTSCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC--C-
T ss_pred CCCCCCCcCCCCCC--CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc--C-
Confidence 35788999998875 799999 8888 8877777889999999999966666 555544 789999999999995 3
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLAC 157 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 157 (249)
..+|..+..+++|+.|+++++. ++.+.. .+.. +++|+.|++++|.++...+..+..+++|+.|++++|.+..-. ..
T Consensus 90 ~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~ 166 (290)
T 1p9a_G 90 QSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AG 166 (290)
T ss_dssp SSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-TT
T ss_pred CcCchhhccCCCCCEEECCCCc-CcccCHHHHcC-CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC-HH
Confidence 4677788899999999999988 887765 6788 999999999999998655666789999999999999987532 34
Q ss_pred eCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcC
Q 039403 158 AGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 158 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
. +..+++|++|++++ |.++.+|..+...+.|+.+++++|++..
T Consensus 167 ~-~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 167 L-LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp T-TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred H-hcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCCccC
Confidence 4 67789999999999 7899999999889999999999998754
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=145.92 Aligned_cols=198 Identities=18% Similarity=0.190 Sum_probs=149.9
Q ss_pred CCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccch
Q 039403 4 SYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGV 81 (249)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (249)
..++.+. ....+++|++| +.++ .+. .++ .+..+++|++|++.++. ..++. +..+++|+.|++++|. .. .+
T Consensus 29 ~~~~~~~-~~~~l~~L~~L~l~~~-~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~--l~-~~ 100 (308)
T 1h6u_A 29 SNVTDTV-TQADLDGITTLSAFGT-GVT-TIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP--LK-NV 100 (308)
T ss_dssp SSTTSEE-CHHHHHTCCEEECTTS-CCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC--CS-CC
T ss_pred CCcCcee-cHHHcCCcCEEEeeCC-Ccc-Cch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc--CC-Cc
Confidence 3444432 35678889999 8777 555 344 57888999999966666 55665 8889999999999885 33 33
Q ss_pred hhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCC
Q 039403 82 SKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSG 161 (249)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 161 (249)
+ .+..+++|+.|+++++. +..+. .+.. +++|+.|++++|.+++ .+ .+..+++|+.|++++|.+.+. .. +.
T Consensus 101 ~-~~~~l~~L~~L~l~~n~-l~~~~-~l~~-l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~---~~-l~ 170 (308)
T 1h6u_A 101 S-AIAGLQSIKTLDLTSTQ-ITDVT-PLAG-LSNLQVLYLDLNQITN-IS-PLAGLTNLQYLSIGNAQVSDL---TP-LA 170 (308)
T ss_dssp G-GGTTCTTCCEEECTTSC-CCCCG-GGTT-CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCCC---GG-GT
T ss_pred h-hhcCCCCCCEEECCCCC-CCCch-hhcC-CCCCCEEECCCCccCc-Cc-cccCCCCccEEEccCCcCCCC---hh-hc
Confidence 3 58888999999998877 77665 4777 8889999999998874 22 377888999999998887652 23 66
Q ss_pred CCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 162 GFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.+++|+.|++++ +.+++++. +..+++|++|++++|.+.+ ++ .+..+++|+++++++|+
T Consensus 171 ~l~~L~~L~l~~-n~l~~~~~-l~~l~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 171 NLSKLTTLKADD-NKISDISP-LASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TCTTCCEEECCS-SCCCCCGG-GGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEEEE
T ss_pred CCCCCCEEECCC-CccCcChh-hcCCCCCCEEEccCCccCc-cc-cccCCCCCCEEEccCCe
Confidence 788899999998 67776665 6778889999999998764 44 37788999999998885
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.8e-20 Score=163.42 Aligned_cols=146 Identities=19% Similarity=0.160 Sum_probs=85.4
Q ss_pred CCCCCccccch-hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSPE-DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp~-~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~ 76 (249)
|+++.++.+|. .+.++++|++| +++| .+.+..|..++.+++|++|++.++. ..+|+ .++++++|++|++++|.
T Consensus 32 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-- 108 (680)
T 1ziw_A 32 LTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-- 108 (680)
T ss_dssp CCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--
T ss_pred CCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc--
Confidence 34566666665 36777777777 6666 6665566666667777777755444 44554 46667777777777764
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccc--cCCCCCceEEeeccccC
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPML--ERLPRLQVLKLKRNSYL 151 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~ 151 (249)
.....+..++++++|++|+++++. +..... .+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|.+.
T Consensus 109 l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 109 IQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSC-CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred cCccChhHccccCCCCEEECCCCc-ccccCchhhcc-cccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 433334556667777777776654 444332 3445 5666666666665553333322 23355555555555443
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=8e-20 Score=158.12 Aligned_cols=117 Identities=19% Similarity=0.098 Sum_probs=94.9
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CC-cchhcCCCcccCeEEEecCcccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SC-TPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
++++.++++|..+. ++|++| +++| .+.+..|..+..+++|++|++.++. .. .|..+.++++|++|++++|. .
T Consensus 7 ls~n~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--l 81 (520)
T 2z7x_B 7 RSKNGLIHVPKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK--L 81 (520)
T ss_dssp CTTSCCSSCCCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC--C
T ss_pred cCCCCccccccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc--e
Confidence 57899999999887 899999 9998 8886667789999999999977666 44 46789999999999999995 4
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCC
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELM 127 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~ 127 (249)
. .+|.. .+++|++|+++++. +..+.+ .+.. +++|++|++++|.+.
T Consensus 82 ~-~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~-l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 82 V-KISCH--PTVNLKHLDLSFNA-FDALPICKEFGN-MSQLKFLGLSTTHLE 128 (520)
T ss_dssp C-EEECC--CCCCCSEEECCSSC-CSSCCCCGGGGG-CTTCCEEEEEESSCC
T ss_pred e-ecCcc--ccCCccEEeccCCc-cccccchhhhcc-CCcceEEEecCcccc
Confidence 4 56655 89999999999977 665432 5666 777777777777654
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-21 Score=155.63 Aligned_cols=207 Identities=18% Similarity=0.171 Sum_probs=156.5
Q ss_pred CCCccccchhhhhcccccee-eecCccc-CCCCCCcCC-------CCccccccccccCC--CCcchhc--CCCcccCeEE
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITL-PAPPKNYFS-------SLKNLIFISALHPS--SCTPDIL--GRLPSVQTLR 69 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~-~~~~~~~~~-------~l~~L~~L~l~~~~--~~~~~~l--~~l~~L~~L~ 69 (249)
++.+ ++|..+... |+.| +..+ .+ ...++..+. .+++|++|++.++. +..|..+ ..+++|++|+
T Consensus 52 ~n~l-~~p~~~~~~--L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 127 (312)
T 1wwl_A 52 VDTE-ADLGQFTDI--IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILN 127 (312)
T ss_dssp CCTT-CCCHHHHHH--HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEE
T ss_pred cccc-ccHHHHHHH--Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEE
Confidence 4556 678887766 8888 7777 66 445666555 68999999977666 4677765 7899999999
Q ss_pred EecCccccccchhhhhcCC-----CCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCC--Ccccc--cCCCC
Q 039403 70 ISGNLSCYHSGVSKSLCEL-----HKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMED--PMPML--ERLPR 139 (249)
Q Consensus 70 l~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~--~~~~~--~~l~~ 139 (249)
+++|. ..+. |..+..+ ++|++|+++++. +..+.. .+.. +++|+.|++++|.+.+. .+..+ ..+++
T Consensus 128 Ls~N~--l~~~-~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~ 202 (312)
T 1wwl_A 128 LRNVS--WATR-DAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRV-FPALSTLDLSDNPELGERGLISALCPLKFPT 202 (312)
T ss_dssp EESCB--CSSS-SSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCC-CSSCCEEECCSCTTCHHHHHHHHSCTTSCTT
T ss_pred ccCCC--Ccch-hHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhcc-CCCCCEEECCCCCcCcchHHHHHHHhccCCC
Confidence 99996 5444 6666655 899999999987 777664 6777 89999999999987643 23344 78899
Q ss_pred CceEEeeccccCCc--eeeeeCCCCCCcccEEEeccCCccccee--ccCcccccccceeeccCcCcCCCccccccCcCcc
Q 039403 140 LQVLKLKRNSYLGR--KLACAGSGGFPELKVLHLKSMYWLDEWT--MGAGALPKLESLIVNPCAYLRKLPEELWCIKSLR 215 (249)
Q Consensus 140 L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~ 215 (249)
|++|++++|.+.+. ..... +..+++|++|++++ |.++..+ ..+..+++|+.|++++|.+. .+|..+. ++|+
T Consensus 203 L~~L~L~~N~l~~~~~~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~ 277 (312)
T 1wwl_A 203 LQVLALRNAGMETPSGVCSAL-AAARVQLQGLDLSH-NSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLS 277 (312)
T ss_dssp CCEEECTTSCCCCHHHHHHHH-HHTTCCCSEEECTT-SCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEE
T ss_pred CCEEECCCCcCcchHHHHHHH-HhcCCCCCEEECCC-CcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCce
Confidence 99999999988742 11122 34678999999999 6676533 34456789999999999976 7887766 8999
Q ss_pred EEEccCCc
Q 039403 216 KLDLHWPQ 223 (249)
Q Consensus 216 ~l~l~~~~ 223 (249)
+|++++|.
T Consensus 278 ~L~Ls~N~ 285 (312)
T 1wwl_A 278 VLDLSYNR 285 (312)
T ss_dssp EEECCSSC
T ss_pred EEECCCCC
Confidence 99999995
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=157.02 Aligned_cols=139 Identities=17% Similarity=0.136 Sum_probs=107.5
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCcccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
++++.++++|..+. +++++| +++| .+.+..+..++.+++|++|++.++. ..+ |..+.++++|++|++++|. .
T Consensus 38 ls~~~L~~ip~~~~--~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l 112 (562)
T 3a79_B 38 YSNRNLTHVPKDLP--PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR--L 112 (562)
T ss_dssp CTTSCCCSCCTTSC--TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC--C
T ss_pred cCCCCCccCCCCCC--CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc--C
Confidence 46789999998875 899999 9998 8887777889999999999966666 444 6678999999999999995 4
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeecccc
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSY 150 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 150 (249)
. .+|.. .+++|++|+++++. +..++. .+.. +++|++|++++|.+++.....+..+ +|+.|++.+|.+
T Consensus 113 ~-~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~-l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l 181 (562)
T 3a79_B 113 Q-NISCC--PMASLRHLDLSFND-FDVLPVCKEFGN-LTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSY 181 (562)
T ss_dssp C-EECSC--CCTTCSEEECCSSC-CSBCCCCGGGGG-CTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSC
T ss_pred C-ccCcc--ccccCCEEECCCCC-ccccCchHhhcc-cCcccEEecCCCccccCchhhhhhc-eeeEEEeecccc
Confidence 3 56655 89999999999988 777653 6777 8889999998888764333333333 236666665544
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.5e-20 Score=162.50 Aligned_cols=206 Identities=18% Similarity=0.141 Sum_probs=103.0
Q ss_pred hhhhcccccee-eecCcccCCCCC-CcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCccccccchhhhhcC
Q 039403 12 DIWMMQKLMHL-NFGCITLPAPPK-NYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCE 87 (249)
Q Consensus 12 ~i~~l~~L~~L-l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 87 (249)
.+..+++|+.| ++.| .+.+.++ ..+..+++|++|++.++. ...+..+..+++|+.|++++|.-...+..|..+..
T Consensus 400 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTCTTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hhhCCCCCCEEeCCCC-cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 44555555555 4444 4433333 344455555555533333 22333444555555555555430011234445555
Q ss_pred CCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCC--------CcccccCCCCCceEEeeccccCCceeeee
Q 039403 88 LHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMED--------PMPMLERLPRLQVLKLKRNSYLGRKLACA 158 (249)
Q Consensus 88 l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~--------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 158 (249)
+++|+.|+++++. +..+.. .+.. +++|++|++++|.+++. .+..+..+++|+.|++++|.+.. .....
T Consensus 479 l~~L~~L~Ls~N~-l~~i~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~ 555 (680)
T 1ziw_A 479 LRNLTILDLSNNN-IANINDDMLEG-LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEV 555 (680)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTT-CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC-CCTTT
T ss_pred CCCCCEEECCCCC-CCcCChhhhcc-ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC-CCHHH
Confidence 5666666665554 554443 3445 55666666666655421 11124555666666666665542 21223
Q ss_pred CCCCCCcccEEEeccCCcccceecc-CcccccccceeeccCcCcCCCccccc-cCcCccEEEccCCc
Q 039403 159 GSGGFPELKVLHLKSMYWLDEWTMG-AGALPKLESLIVNPCAYLRKLPEELW-CIKSLRKLDLHWPQ 223 (249)
Q Consensus 159 ~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~l~-~l~~L~~l~l~~~~ 223 (249)
+..+++|+.|++++ |.++.++.. +..+++|+.|++++|.+.+..+..+. .+++|+.+++++|+
T Consensus 556 -~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 556 -FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp -TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred -cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC
Confidence 45566666666665 455555544 24556666666666665543333343 45666666666654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=158.34 Aligned_cols=212 Identities=16% Similarity=0.069 Sum_probs=165.7
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
+++.++++|+.+. ++|++| +++| .+.+..|..++.+++|++|++.++. ..+ +..+.++++|++|++++|. ..
T Consensus 13 ~~~~l~~ip~~~~--~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~ 87 (549)
T 2z81_A 13 RSRSFTSIPSGLT--AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH--LS 87 (549)
T ss_dssp TTSCCSSCCSCCC--TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--CC
T ss_pred CCCccccccccCC--CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc--cC
Confidence 5678999999775 799999 9988 7877778889999999999976666 444 4678899999999999996 66
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCc-ccccCCCCCceEEeeccccCCcee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPM-PMLERLPRLQVLKLKRNSYLGRKL 155 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~ 155 (249)
+..+..++.+++|++|+++++. +..+.. .+.. +++|+.|++++|...+..+ ..+..+++|++|++++|.+.+..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~- 164 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPN-LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ- 164 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTT-CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-
T ss_pred ccCHHHhccCCCCcEEECCCCc-ccccchhhhhhc-cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC-
Confidence 6666779999999999999977 765432 6778 8999999999998544444 57888999999999999887654
Q ss_pred eeeCCCCCCcccEEEeccCCcccceeccC-cccccccceeeccCcCcCCC--c-cccccCcCccEEEccCCc
Q 039403 156 ACAGSGGFPELKVLHLKSMYWLDEWTMGA-GALPKLESLIVNPCAYLRKL--P-EELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~l--~-~~l~~l~~L~~l~l~~~~ 223 (249)
+.. ++.+++|++|+++. +.+..++..+ ..+++|+.|++++|.+.+.. + .....++.|+.+++++|.
T Consensus 165 ~~~-l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 165 SQS-LKSIRDIHHLTLHL-SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp TTT-TTTCSEEEEEEEEC-SBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred hhh-hhccccCceEeccc-CcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 556 78889999999998 5566555543 35788999999999876521 1 122346777777777774
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=163.91 Aligned_cols=95 Identities=22% Similarity=0.188 Sum_probs=41.8
Q ss_pred CCCcccc-chhhhhcccccee-eecCcccCCCC-CCcCCCCccccccccccCC-C-CcchhcCCCcccCeEEEecCcccc
Q 039403 3 SSYIDQS-PEDIWMMQKLMHL-NFGCITLPAPP-KNYFSSLKNLIFISALHPS-S-CTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 3 ~~~l~~l-p~~i~~l~~L~~L-l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
++.++.+ |..+..+++|+.| +++| ...+.+ |..++++++|++|++.++. . ..|..++++++|++|++++|. .
T Consensus 33 ~N~i~~i~~~~~~~l~~L~~LdLs~n-~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~--l 109 (844)
T 3j0a_A 33 FNYIRTVTASSFPFLEQLQLLELGSQ-YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG--L 109 (844)
T ss_dssp SCCCCEECSSSCSSCCSCSEEEECTT-CCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC--C
T ss_pred CCcCCccChhHCcccccCeEEeCCCC-CCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC--C
Confidence 3444444 3344555555555 4444 222233 3444455555555533333 2 224444455555555555543 3
Q ss_pred ccchhhh--hcCCCCCcEEEEecCC
Q 039403 78 HSGVSKS--LCELHKLECLKLVNES 100 (249)
Q Consensus 78 ~~~~~~~--l~~l~~L~~L~l~~~~ 100 (249)
.+..+.. +.++++|++|+++++.
T Consensus 110 ~~~~~~~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 110 SDAVLKDGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp SSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred CcccccCccccccCCCCEEECCCCc
Confidence 3322222 4445555555555433
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-19 Score=149.28 Aligned_cols=174 Identities=16% Similarity=0.104 Sum_probs=99.5
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++++.++.+| .++.+++|++| +++| .+.+ ++ ++.+++|++|++.++. ..++ ++++++|++|++++|. ..
T Consensus 49 Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~--l~ 119 (457)
T 3bz5_A 49 CHNSSITDMT-GIEKLTGLTKLICTSN-NITT-LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK--LT 119 (457)
T ss_dssp CCSSCCCCCT-TGGGCTTCSEEECCSS-CCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC--CS
T ss_pred ccCCCcccCh-hhcccCCCCEEEccCC-cCCe-Ec--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc--CC
Confidence 4567777776 67888888888 7777 6654 33 6778888888855555 4443 6778888888888875 33
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcc----------------------cCCCCCcccccC
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNT----------------------ELMEDPMPMLER 136 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~----------------------~~~~~~~~~~~~ 136 (249)
+ ++ +..+++|+.|+++++. ++.++ +.. +++|+.|+++.| .+++ .+ ++.
T Consensus 120 ~-l~--~~~l~~L~~L~l~~N~-l~~l~--l~~-l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~ 189 (457)
T 3bz5_A 120 K-LD--VSQNPLLTYLNCARNT-LTEID--VSH-NTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQ 189 (457)
T ss_dssp C-CC--CTTCTTCCEEECTTSC-CSCCC--CTT-CTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTT
T ss_pred e-ec--CCCCCcCCEEECCCCc-cceec--ccc-CCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--ccc
Confidence 3 33 6677778888777755 55442 333 444444444444 4432 11 334
Q ss_pred CCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCc
Q 039403 137 LPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYL 201 (249)
Q Consensus 137 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 201 (249)
+++|+.|++++|.+.+. . ++.+++|++|++++ +.++++| +..+++|+.|++++|.+.
T Consensus 190 l~~L~~L~l~~N~l~~~----~-l~~l~~L~~L~Ls~-N~l~~ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 190 NKLLNRLNCDTNNITKL----D-LNQNIQLTFLDCSS-NKLTEID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CTTCCEEECCSSCCSCC----C-CTTCTTCSEEECCS-SCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred CCCCCEEECcCCcCCee----c-cccCCCCCEEECcC-CcccccC--ccccCCCCEEEeeCCcCC
Confidence 44444444444444331 1 33445555555555 3444443 444455555555555543
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.2e-20 Score=160.24 Aligned_cols=148 Identities=21% Similarity=0.229 Sum_probs=109.6
Q ss_pred CCCCCccccc-hhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSP-EDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp-~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~ 76 (249)
|+++.++.++ ..+..+++|++| +++| .+.+..|..++.+++|++|++.++. ..+++ .++++++|++|++++|.
T Consensus 33 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-- 109 (549)
T 2z81_A 33 LSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP-- 109 (549)
T ss_dssp CCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC--
T ss_pred CcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc--
Confidence 4678888884 579999999999 8888 8887777889999999999966666 54544 58999999999999986
Q ss_pred ccc-chhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCccccc-------------------
Q 039403 77 YHS-GVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLE------------------- 135 (249)
Q Consensus 77 ~~~-~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------------- 135 (249)
... ..+..+.++++|+.|+++++..+..++. .+.. +++|++|++++|.+++..+..++
T Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 188 (549)
T 2z81_A 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG-LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188 (549)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT-CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHH
T ss_pred ccccchhhhhhccCCccEEECCCCccccccCHhhhhc-ccccCeeeccCCcccccChhhhhccccCceEecccCcccccc
Confidence 443 3456788899999999988642444432 5666 77788888887777654444443
Q ss_pred -----CCCCCceEEeeccccCC
Q 039403 136 -----RLPRLQVLKLKRNSYLG 152 (249)
Q Consensus 136 -----~l~~L~~L~l~~~~~~~ 152 (249)
.+++|++|++++|.+.+
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 189 EIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp HHHHHSTTTBSEEEEESCBCTT
T ss_pred hhhHhhcccccEEEccCCcccc
Confidence 35667777777766654
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.6e-19 Score=150.52 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=27.2
Q ss_pred CCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 162 GFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.+++|+.|++++ +.++.++. +..+++|+.|++++|.+.+ ++. +..+++|+++++++|.
T Consensus 263 ~l~~L~~L~l~~-n~l~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 263 GLTKLTELKLGA-NQISNISP-LAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp TCTTCSEEECCS-SCCCCCGG-GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSC
T ss_pred cCCCCCEEECCC-CccCcccc-ccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCc
Confidence 344444444444 33333333 3444555555555555432 222 4455566666666553
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=138.93 Aligned_cols=203 Identities=19% Similarity=0.137 Sum_probs=147.1
Q ss_pred ccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcch-hcCCCcccCeEEEec-Cccccccc
Q 039403 6 IDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPD-ILGRLPSVQTLRISG-NLSCYHSG 80 (249)
Q Consensus 6 l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~-~l~~l~~L~~L~l~~-~~~~~~~~ 80 (249)
++++|. +. +++++| +.+| .+.+..+..++.+++|++|++.++. ..++. .+.++++|++|++++ |. ....
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~--l~~i 96 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN--LTYI 96 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT--CCEE
T ss_pred ccccCC-CC--CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC--eeEc
Confidence 677887 43 488888 8887 7765555578888999999976663 44554 677888999999987 64 4443
Q ss_pred hhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCcc---EEEEEcc-cCCCCCcccccCCCCCc-eEEeeccccCCcee
Q 039403 81 VSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLI---QLSLSNT-ELMEDPMPMLERLPRLQ-VLKLKRNSYLGRKL 155 (249)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~ 155 (249)
.+..+..+++|+.|+++++. +..++ .+.. +++|+ .|++++| .++...+..+..+++|+ .|++++|.+. ..
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~-l~~lp-~~~~-l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i- 171 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTG-LKMFP-DLTK-VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SV- 171 (239)
T ss_dssp CTTSEECCTTCCEEEEEEEC-CCSCC-CCTT-CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EE-
T ss_pred CHHHhCCCCCCCEEeCCCCC-Ccccc-cccc-ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-cc-
Confidence 34567888899999998877 77655 3666 77777 8999998 77644445678888898 9999888876 33
Q ss_pred eeeCCCCCCcccEEEeccCCcccceec-cCccc-ccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 156 ACAGSGGFPELKVLHLKSMYWLDEWTM-GAGAL-PKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.. ....++|+.|++++|..++.++. .+..+ ++|+.|++++|.+. .+|.. .++.|+.|+++++.
T Consensus 172 ~~~-~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 172 QGY-AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTT-TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CHh-hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 322 22337899999988435777754 45677 88999999998875 45654 67888888888764
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=158.94 Aligned_cols=208 Identities=17% Similarity=0.142 Sum_probs=158.4
Q ss_pred ccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhc--------------------CCCc
Q 039403 6 IDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDIL--------------------GRLP 63 (249)
Q Consensus 6 l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l--------------------~~l~ 63 (249)
.+.+|..+..+++|++| +.++ .+. .+|..+..+ +|++|++.++. ..+|... ..++
T Consensus 271 ~~~~~~~~~~l~~L~~L~l~~~-~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 271 LDDIIDLFNCLTNVSSFSLVSV-TIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp ESCSTTTTGGGTTCSEEEEESC-EEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hhhchhhhcCcCcccEEEecCc-cch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCC
Confidence 35578889999999999 8888 776 688888888 99999866655 5444311 3445
Q ss_pred ccCeEEEecCccccccc--hhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCc-ccccCCCCC
Q 039403 64 SVQTLRISGNLSCYHSG--VSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPM-PMLERLPRL 140 (249)
Q Consensus 64 ~L~~L~l~~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L 140 (249)
+|+.|++++|. .... .+..+..+++|+.|+++++. +..+...+.. +++|+.|++++|.+.+..+ ..+..+++|
T Consensus 348 ~L~~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 348 SLEFLDLSRNG--LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp TCCEEECCSSC--CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEET-CTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred CCCEEeCcCCc--cCccccccccccccCccCEEECCCCc-cccccccccc-cCCCCEEEccCCccccccchhhhhcCCCC
Confidence 56666666554 3222 24566677777777777766 6666556777 8889999999988875444 467888999
Q ss_pred ceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc--ceeccCcccccccceeeccCcCcCCCccccccCcCccEEE
Q 039403 141 QVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD--EWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLD 218 (249)
Q Consensus 141 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~ 218 (249)
+.|++++|.+.+.. +.. +..+++|++|++++ +.++ .+|..+..+++|+.|++++|.+.+..|..+..+++|++++
T Consensus 424 ~~L~l~~n~l~~~~-~~~-~~~l~~L~~L~l~~-n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 424 IYLDISHTHTRVAF-NGI-FNGLSSLEVLKMAG-NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp CEEECTTSCCEECC-TTT-TTTCTTCCEEECTT-CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEeCcCCcccccc-hhh-hhcCCcCcEEECcC-CcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence 99999988876544 555 77899999999999 4554 5888888999999999999998876688889999999999
Q ss_pred ccCCc
Q 039403 219 LHWPQ 223 (249)
Q Consensus 219 l~~~~ 223 (249)
+++|.
T Consensus 501 l~~n~ 505 (570)
T 2z63_A 501 MASNQ 505 (570)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 99995
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.4e-20 Score=145.60 Aligned_cols=195 Identities=16% Similarity=0.094 Sum_probs=155.6
Q ss_pred CCCCCccccch-hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcc-hhcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSPE-DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTP-DILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp~-~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~ 76 (249)
++++.++.+|. .+..+++|++| +++| .+.+..+..++.+++|++|++.++. ..++ ..+.++++|++|++++|.
T Consensus 35 ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-- 111 (276)
T 2z62_A 35 LSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-- 111 (276)
T ss_dssp CTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC--
T ss_pred CCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC--
Confidence 46889999988 79999999999 9888 8876666688999999999966666 4444 678899999999999996
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCceeee--ecCCCCCCCccEEEEEcccCCCCCcccccCCCCCc----eEEeecccc
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSRMV--LSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQ----VLKLKRNSY 150 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~--l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~~~~~ 150 (249)
.....+..+..+++|+.|+++++. +..+. ..+.. +++|+.|++++|.+++..+..+..+++++ .|++++|.+
T Consensus 112 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l 189 (276)
T 2z62_A 112 LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (276)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGG-CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCC
T ss_pred ccccCchhcccCCCCCEEECcCCc-cceecCchhhcc-CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcc
Confidence 554444468899999999999987 77744 37888 99999999999999865555665555555 899999988
Q ss_pred CCceeeeeCCCCCCcccEEEeccCCcccceecc-CcccccccceeeccCcCcCCC
Q 039403 151 LGRKLACAGSGGFPELKVLHLKSMYWLDEWTMG-AGALPKLESLIVNPCAYLRKL 204 (249)
Q Consensus 151 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~l 204 (249)
.+. +.. .....+|+.|++++ +.++.++.. +..+++|+.|++++|++.+..
T Consensus 190 ~~~--~~~-~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 190 NFI--QPG-AFKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CEE--CTT-SSCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccc--Ccc-ccCCCcccEEECCC-CceeecCHhHhcccccccEEEccCCcccccC
Confidence 653 222 33445899999999 678877765 478999999999999987643
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=146.45 Aligned_cols=196 Identities=16% Similarity=0.091 Sum_probs=156.1
Q ss_pred hcccccee-eecCcccCCCCCCcC--CCCccccccccccCC-C-Ccc----hhcCCCcccCeEEEecCccccccchhhhh
Q 039403 15 MMQKLMHL-NFGCITLPAPPKNYF--SSLKNLIFISALHPS-S-CTP----DILGRLPSVQTLRISGNLSCYHSGVSKSL 85 (249)
Q Consensus 15 ~l~~L~~L-l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~-~-~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 85 (249)
.+++|++| +++| .+.+..|..+ +.+++|++|++.++. . ..+ ..+..+++|++|++++|. .....+..+
T Consensus 89 ~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~ 165 (310)
T 4glp_A 89 AYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH--SPAFSCEQV 165 (310)
T ss_dssp HHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS--SCCCCTTSC
T ss_pred ccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC--cchhhHHHh
Confidence 45779999 9888 8888888888 899999999976666 3 222 344579999999999997 666667788
Q ss_pred cCCCCCcEEEEecCCCcee---eee--cCCCCCCCccEEEEEcccCCCCCcc----cccCCCCCceEEeeccccCCceee
Q 039403 86 CELHKLECLKLVNESKLSR---MVL--SEYQFPPSLIQLSLSNTELMEDPMP----MLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 86 ~~l~~L~~L~l~~~~~L~~---l~l--~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
..+++|++|+++++. +.. +.. .+.. +++|++|++++|.++ ..+. .+..+++|++|++++|.+.+.. +
T Consensus 166 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-p 241 (310)
T 4glp_A 166 RAFPALTSLDLSDNP-GLGERGLMAALCPHK-FPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATV-N 241 (310)
T ss_dssp CCCTTCCEEECCSCT-TCHHHHHHTTSCTTS-SCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCC-C
T ss_pred ccCCCCCEEECCCCC-CccchhhhHHHhhhc-CCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccc-h
Confidence 999999999999976 533 221 3467 889999999999986 3333 2467899999999999998754 4
Q ss_pred eeCCCCC---CcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 157 CAGSGGF---PELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 157 ~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.. +..+ ++|++|++++ |.++.+|..+. ++|+.|++++|.+.+ +|. +..+++|+.+++++|+
T Consensus 242 ~~-~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 242 PS-APRCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp SC-CSSCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTT
T ss_pred hh-HHhccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCC
Confidence 33 4444 7999999999 78888887764 899999999999875 444 5788999999999996
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=8e-20 Score=148.64 Aligned_cols=179 Identities=17% Similarity=0.102 Sum_probs=135.1
Q ss_pred CcCCCCccccccccccCC-CC-cchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeee------
Q 039403 35 NYFSSLKNLIFISALHPS-SC-TPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMV------ 106 (249)
Q Consensus 35 ~~~~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~------ 106 (249)
..+..+++|++|++.++. .. .+..+.++++|+.|++++|. ..+..+ +..+++|+.|+++++. ++.+.
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~--~~~l~~L~~L~Ls~n~-l~~l~~~~~L~ 102 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--LYETLD--LESLSTLRTLDLNNNY-VQELLVGPSIE 102 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC--CEEEEE--ETTCTTCCEEECCSSE-EEEEEECTTCC
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc--CCcchh--hhhcCCCCEEECcCCc-cccccCCCCcC
Confidence 334567899999977766 44 45689999999999999996 544333 8889999999999865 44433
Q ss_pred ---e--------cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCC
Q 039403 107 ---L--------SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMY 175 (249)
Q Consensus 107 ---l--------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 175 (249)
+ .... +++|+.|++++|.+++..+..+..+++|++|++++|.+.+.. +......+++|++|++++ +
T Consensus 103 ~L~l~~n~l~~~~~~~-~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~-N 179 (317)
T 3o53_A 103 TLHAANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAASSDTLEHLNLQY-N 179 (317)
T ss_dssp EEECCSSCCSEEEECC-CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE-GGGGGGGTTTCCEEECTT-S
T ss_pred EEECCCCccCCcCccc-cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc-HHHHhhccCcCCEEECCC-C
Confidence 2 2234 667888888888887555567778889999999988887644 333024678999999998 6
Q ss_pred cccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 176 WLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 176 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.++.++... .+++|+.|++++|.+. .+|..+..+++|+++++++|.
T Consensus 180 ~l~~~~~~~-~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 180 FIYDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp CCCEEECCC-CCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSC
T ss_pred cCccccccc-ccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCc
Confidence 777775443 4889999999999976 466668889999999999996
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.9e-19 Score=149.43 Aligned_cols=200 Identities=18% Similarity=0.160 Sum_probs=121.0
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
+++.++.++. +..+++|++| +.+| .+.+..+ ++.+++|++|++.++. ..+ ..+..+++|+.|++++|. ...
T Consensus 185 ~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~--l~~ 257 (466)
T 1o6v_A 185 SSNKVSDISV-LAKLTNLESLIATNN-QISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQ--ISN 257 (466)
T ss_dssp CSSCCCCCGG-GGGCTTCSEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC--CCC
T ss_pred cCCcCCCChh-hccCCCCCEEEecCC-ccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCc--ccc
Confidence 3444554432 4555555555 5554 4433222 4455556666644433 322 234556666666666664 322
Q ss_pred chhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeC
Q 039403 80 GVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAG 159 (249)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 159 (249)
. +. +..+++|+.|+++++. +..+. .+.. +++|+.|++++|.+++. ..++.+++|+.|++++|.+.+.. .
T Consensus 258 ~-~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~-l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~---~- 326 (466)
T 1o6v_A 258 L-AP-LSGLTKLTELKLGANQ-ISNIS-PLAG-LTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS---P- 326 (466)
T ss_dssp C-GG-GTTCTTCSEEECCSSC-CCCCG-GGTT-CTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG---G-
T ss_pred c-hh-hhcCCCCCEEECCCCc-cCccc-cccC-CCccCeEEcCCCcccCc--hhhcCCCCCCEEECcCCcCCCch---h-
Confidence 2 22 5566666666666655 55443 2556 67777777777777632 22667777788888777776533 2
Q ss_pred CCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 160 SGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+..+++|+.|++++ +.+++++ .+..+++|+.|++++|.+.+..| +..+++|+.+++++|.
T Consensus 327 ~~~l~~L~~L~l~~-n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 327 VSSLTKLQRLFFYN-NKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp GGGCTTCCEEECCS-SCCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred hccCccCCEeECCC-CccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 44677888888887 4666553 46677888888888888765544 6778888888888875
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=155.15 Aligned_cols=175 Identities=17% Similarity=0.107 Sum_probs=135.1
Q ss_pred CCCccccccccccCC-C-CcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeee---------
Q 039403 38 SSLKNLIFISALHPS-S-CTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMV--------- 106 (249)
Q Consensus 38 ~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~--------- 106 (249)
..+++|++|++.++. . ..|..+..+++|+.|++++|. ..+..+ +..+++|+.|+++++. +..++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~~~~L~~L~ 105 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--LYETLD--LESLSTLRTLDLNNNY-VQELLVGPSIETLH 105 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC--CEEEEE--CTTCTTCCEEECCSSE-EEEEEECTTCCEEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC--CCCCcc--cccCCCCCEEEecCCc-CCCCCCCCCcCEEE
Confidence 345699999977666 4 445689999999999999996 544443 8899999999999865 44433
Q ss_pred e--------cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCC-CCCcccEEEeccCCcc
Q 039403 107 L--------SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSG-GFPELKVLHLKSMYWL 177 (249)
Q Consensus 107 l--------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 177 (249)
+ .... +++|+.|++++|.+++..+..++.+++|+.|++++|.+.+.. +.. +. .+++|++|++++ |.+
T Consensus 106 L~~N~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~-l~~~l~~L~~L~Ls~-N~l 181 (487)
T 3oja_A 106 AANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAE-LAASSDTLEHLNLQY-NFI 181 (487)
T ss_dssp CCSSCCCCEEECC-CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-GGG-GGGGTTTCCEEECTT-SCC
T ss_pred CcCCcCCCCCccc-cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC-hHH-HhhhCCcccEEecCC-Ccc
Confidence 2 2233 667888888888888666677888899999999988887654 333 43 678999999999 677
Q ss_pred cceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 178 DEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 178 ~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.++.. ..+++|+.|++++|.+.+ +|+.+..++.|+.+++++|.
T Consensus 182 ~~~~~~-~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 182 YDVKGQ-VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp CEEECC-CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSC
T ss_pred cccccc-ccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCc
Confidence 777553 358899999999999765 66668889999999999985
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-20 Score=152.85 Aligned_cols=213 Identities=17% Similarity=0.146 Sum_probs=163.9
Q ss_pred CCCccccchhhhhc--ccccee-eecCcccCCCCCCcCCCCccccccccccCC-C-C-cchhcCCCcccCeEEEecCccc
Q 039403 3 SSYIDQSPEDIWMM--QKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-S-C-TPDILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 3 ~~~l~~lp~~i~~l--~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~-~-~~~~l~~l~~L~~L~l~~~~~~ 76 (249)
++.+. |..+..+ ++++.| +.++ .+.+..+. +..+++|++|++.++. . . ++..+..+++|++|++++|.
T Consensus 56 ~~~~~--~~~~~~~~~~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-- 129 (336)
T 2ast_B 56 GKNLH--PDVTGRLLSQGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-- 129 (336)
T ss_dssp TCBCC--HHHHHHHHHTTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB--
T ss_pred cccCC--HHHHHhhhhccceEEEcCCc-cccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc--
Confidence 44444 5677777 899999 8888 77765554 6789999999966665 3 3 77788999999999999997
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCcee--eeecCCCCCCCccEEEEEcc-cCCCC-CcccccCCC-CCceEEeecc--c
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSR--MVLSEYQFPPSLIQLSLSNT-ELMED-PMPMLERLP-RLQVLKLKRN--S 149 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~--l~l~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~l~~~--~ 149 (249)
.....+..+..+++|++|+++++..+.. +...+.. +++|+.|++++| .+++. .+..+..++ +|++|++++| .
T Consensus 130 l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 130 LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 208 (336)
T ss_dssp CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc
Confidence 7777888899999999999999622553 2224667 899999999999 87643 456678899 9999999998 4
Q ss_pred cCCceeeeeCCCCCCcccEEEeccCCccc-ceeccCcccccccceeeccCc-CcCCCccccccCcCccEEEccCCc
Q 039403 150 YLGRKLACAGSGGFPELKVLHLKSMYWLD-EWTMGAGALPKLESLIVNPCA-YLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 150 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+++...+.. +..+++|++|++++|..++ ..+..+..+++|++|++++|. +.......+..+++|++|++++|-
T Consensus 209 ~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i 283 (336)
T 2ast_B 209 LQKSDLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 283 (336)
T ss_dssp SCHHHHHHH-HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSS
T ss_pred CCHHHHHHH-HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCcc
Confidence 443333445 6678999999999965465 566678889999999999996 322222357789999999999983
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=138.72 Aligned_cols=176 Identities=22% Similarity=0.207 Sum_probs=90.4
Q ss_pred CCCccccccccccCCCCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCc
Q 039403 38 SSLKNLIFISALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSL 116 (249)
Q Consensus 38 ~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L 116 (249)
..+++|+.|++.++.-...+.+..+++|++|++++|. ... + ..+..+++|++|+++++. ++.+.. .+.. +++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~--l~~-~-~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~-l~~L 111 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK--LHD-I-SALKELTNLTYLILTGNQ-LQSLPNGVFDK-LTNL 111 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC--CCC-C-GGGTTCTTCCEEECTTSC-CCCCCTTTTTT-CTTC
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCC--CCC-c-hhhcCCCCCCEEECCCCc-cCccChhHhcC-CcCC
Confidence 3455555555333331122234555666666666553 222 2 245555666666666554 544443 2444 5566
Q ss_pred cEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceecc-Ccccccccceee
Q 039403 117 IQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMG-AGALPKLESLIV 195 (249)
Q Consensus 117 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l 195 (249)
+.|++++|.+++..+..+..+++|++|++++|.+.+.. +.. +..+++|++|++++ +.++.++.. +..+++|+.|++
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~-~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP-KGV-FDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTT-TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC-HHH-hccCccCCEEECCC-CCcCccCHHHhcCCccCCEEEC
Confidence 66666666555433344555566666666655554322 223 34555666666665 344444433 345556666666
Q ss_pred ccCcCcCCCccccccCcCccEEEccCC
Q 039403 196 NPCAYLRKLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 196 ~~~~~~~~l~~~l~~l~~L~~l~l~~~ 222 (249)
++|.+.+..+..+..+++|+++++++|
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 666655433334455666666666655
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=140.58 Aligned_cols=182 Identities=16% Similarity=0.196 Sum_probs=150.8
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++++.++.+| .+..+++|++| +++| .+.+ ++. ++.+++|++|++.++. ..++ .+..+++|+.|++++|. ..
T Consensus 48 l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~--l~ 120 (308)
T 1h6u_A 48 AFGTGVTTIE-GVQYLNNLIGLELKDN-QITD-LAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ--IT 120 (308)
T ss_dssp CTTSCCCCCT-TGGGCTTCCEEECCSS-CCCC-CGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSC--CC
T ss_pred eeCCCccCch-hhhccCCCCEEEccCC-cCCC-Chh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCC--CC
Confidence 4678899998 68999999999 9888 7764 444 8999999999966666 5554 68899999999999996 43
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACA 158 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 158 (249)
. ++. +..+++|+.|+++++. +..+. .+.. +++|+.|++++|.+++ .+. +..+++|+.|++++|.+.+.. .
T Consensus 121 ~-~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~-l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~---~ 190 (308)
T 1h6u_A 121 D-VTP-LAGLSNLQVLYLDLNQ-ITNIS-PLAG-LTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDIS---P 190 (308)
T ss_dssp C-CGG-GTTCTTCCEEECCSSC-CCCCG-GGGG-CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG---G
T ss_pred C-chh-hcCCCCCCEEECCCCc-cCcCc-cccC-CCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcCh---h
Confidence 3 443 8899999999999987 77665 3777 8999999999999974 333 889999999999999987632 3
Q ss_pred CCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcC
Q 039403 159 GSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 159 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
+..+++|++|++++ +.++.++. +..+++|+.|++++|++.+
T Consensus 191 -l~~l~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 191 -LASLPNLIEVHLKN-NQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -GGGCTTCCEEECTT-SCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred -hcCCCCCCEEEccC-CccCcccc-ccCCCCCCEEEccCCeeec
Confidence 56789999999999 67887774 7889999999999999764
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-18 Score=134.50 Aligned_cols=174 Identities=18% Similarity=0.169 Sum_probs=94.4
Q ss_pred cccee-eecCcccCCCCCCcCCCCccccccccccCC-C-CcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEE
Q 039403 18 KLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-S-CTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECL 94 (249)
Q Consensus 18 ~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 94 (249)
..+++ ..++ .+. .+|..+. ++++.|++.++. . ..+..+.++++|++|++++|. .....+..+..+++|+.|
T Consensus 15 ~~~~l~~~~~-~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 15 GKKEVDCQGK-SLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGTEEECTTC-CCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEE
T ss_pred CCeEEecCCC-Ccc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc--CCccCHhHhccCCcCCEE
Confidence 34455 4444 333 4554443 466666644444 2 233356666677777776665 444444455666666666
Q ss_pred EEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEecc
Q 039403 95 KLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKS 173 (249)
Q Consensus 95 ~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 173 (249)
+++++. +..+.. .+.. +++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.. +.. +..+++|++|++++
T Consensus 89 ~L~~n~-l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 89 GLANNQ-LASLPLGVFDH-LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-AGA-FDKLTNLQTLSLST 164 (251)
T ss_dssp ECTTSC-CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTT-TTTCTTCCEEECCS
T ss_pred ECCCCc-ccccChhHhcc-cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-HHH-cCcCcCCCEEECCC
Confidence 666655 554443 3445 566666666666665333334455666666666666554322 223 45556666666666
Q ss_pred CCcccceec-cCcccccccceeeccCcCcC
Q 039403 174 MYWLDEWTM-GAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 174 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 202 (249)
|.++.++. .+..+++|+.|++++|++..
T Consensus 165 -N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 165 -NQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp -SCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred -CcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 45554443 34455666666666666544
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-18 Score=143.59 Aligned_cols=194 Identities=14% Similarity=0.104 Sum_probs=132.7
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++++.++.+| ++.+++|++| +++| .+.+ ++ ++.+++|++|++.++. ..++ ++++++|+.|++++|. ..
T Consensus 71 Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~-~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~--l~ 140 (457)
T 3bz5_A 71 CTSNNITTLD--LSQNTNLTYLACDSN-KLTN-LD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT--LT 140 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCSEEECCSS-CCSC-CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC--CS
T ss_pred ccCCcCCeEc--cccCCCCCEEECcCC-CCce-ee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc--cc
Confidence 3566666665 6677777777 6666 5553 22 5666677777644444 4343 5566666666666664 22
Q ss_pred c---------------------chhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCC
Q 039403 79 S---------------------GVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERL 137 (249)
Q Consensus 79 ~---------------------~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 137 (249)
+ .+ .+..+++|+.|+++++. ++.++ +.. +++|+.|++++|.+++. .++.+
T Consensus 141 ~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~--l~~-l~~L~~L~l~~N~l~~~---~l~~l 211 (457)
T 3bz5_A 141 EIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD--VSQ-NKLLNRLNCDTNNITKL---DLNQN 211 (457)
T ss_dssp CCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC--CTT-CTTCCEEECCSSCCSCC---CCTTC
T ss_pred eeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec--ccc-CCCCCEEECcCCcCCee---ccccC
Confidence 2 11 23445556666665555 55543 667 88999999999999853 47889
Q ss_pred CCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccc----------cccceeeccCcCcCCCccc
Q 039403 138 PRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALP----------KLESLIVNPCAYLRKLPEE 207 (249)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----------~L~~L~l~~~~~~~~l~~~ 207 (249)
++|+.|++++|.+.+ . + ++.+++|+.|++++ +.++.++ ...++ +|+.+++++|...+.+|
T Consensus 212 ~~L~~L~Ls~N~l~~-i-p---~~~l~~L~~L~l~~-N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-- 281 (457)
T 3bz5_A 212 IQLTFLDCSSNKLTE-I-D---VTPLTQLTYFDCSV-NPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-- 281 (457)
T ss_dssp TTCSEEECCSSCCSC-C-C---CTTCTTCSEEECCS-SCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--
T ss_pred CCCCEEECcCCcccc-c-C---ccccCCCCEEEeeC-CcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--
Confidence 999999999999887 2 2 56889999999999 6777665 23344 45667777777666665
Q ss_pred cccCcCccEEEccCCc
Q 039403 208 LWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 208 l~~l~~L~~l~l~~~~ 223 (249)
.+.+++|+.+++++|.
T Consensus 282 ~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 282 AEGCRKIKELDVTHNT 297 (457)
T ss_dssp CTTCTTCCCCCCTTCT
T ss_pred ccccccCCEEECCCCc
Confidence 4678999999999996
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-18 Score=149.55 Aligned_cols=62 Identities=19% Similarity=0.131 Sum_probs=31.4
Q ss_pred CCCCCcccEEEeccCCccccee-ccCcccccccceeeccCcCcCCCccccccC-cCccEEEccCC
Q 039403 160 SGGFPELKVLHLKSMYWLDEWT-MGAGALPKLESLIVNPCAYLRKLPEELWCI-KSLRKLDLHWP 222 (249)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l-~~L~~l~l~~~ 222 (249)
+..+++|++|++++ |.++.++ ..+..+++|+.|++++|.+.+..|..+..+ ++|+.+++++|
T Consensus 514 f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 514 FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp TTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred HcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 44445555555555 3444332 233445555555555555554444455554 45666666654
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-20 Score=154.86 Aligned_cols=214 Identities=19% Similarity=0.181 Sum_probs=128.0
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCC----CCCcCCCCccccccccccCC-----CCcchhc-------CCCccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAP----PKNYFSSLKNLIFISALHPS-----SCTPDIL-------GRLPSV 65 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~-----~~~~~~l-------~~l~~L 65 (249)
...+..++..+..+++|++| +++| .+... ++..+..+++|++|++.++. +.+|..+ ..+++|
T Consensus 18 ~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 18 TEDEKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp SHHHHTTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence 34566788888889999999 8888 77544 33446778888888866653 2344444 678889
Q ss_pred CeEEEecCcccccc----chhhhhcCCCCCcEEEEecCCCceeeee-----cCCCCC---------CCccEEEEEcccCC
Q 039403 66 QTLRISGNLSCYHS----GVSKSLCELHKLECLKLVNESKLSRMVL-----SEYQFP---------PSLIQLSLSNTELM 127 (249)
Q Consensus 66 ~~L~l~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~L~~l~l-----~~~~~~---------~~L~~L~l~~~~~~ 127 (249)
++|++++|. ... .++..+..+++|+.|+++++. +..... .+.. + ++|+.|++++|.++
T Consensus 97 ~~L~Ls~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~-l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 97 HTVRLSDNA--FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQE-LAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CEEECCSCC--CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHH-HHHHHHHHTCCCCCEEECCSSCCT
T ss_pred cEEECCCCc--CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHH-HhhhhhcccCCCCcEEECCCCCCC
Confidence 999998886 444 366778888888888888865 432111 1212 2 56666666666665
Q ss_pred CC-Cc---ccccCCCCCceEEeeccccCCce----eeeeCCCCCCcccEEEeccCCcc-----cceeccCccccccccee
Q 039403 128 ED-PM---PMLERLPRLQVLKLKRNSYLGRK----LACAGSGGFPELKVLHLKSMYWL-----DEWTMGAGALPKLESLI 194 (249)
Q Consensus 128 ~~-~~---~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~ 194 (249)
.. .+ ..+..+++|+.|++++|.+.... .+.. +..+++|++|++++ +.+ ..++..+..+++|+.|+
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~-l~~~~~L~~L~Ls~-n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG-LAYCQELKVLDLQD-NTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT-GGGCTTCCEEECCS-SCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH-hhcCCCccEEECcC-CCCCcHHHHHHHHHHccCCCcCEEE
Confidence 22 22 23445566666666666554211 1113 44556666666666 334 23444555556666666
Q ss_pred eccCcCcCC----Cccccc--cCcCccEEEccCCc
Q 039403 195 VNPCAYLRK----LPEELW--CIKSLRKLDLHWPQ 223 (249)
Q Consensus 195 l~~~~~~~~----l~~~l~--~l~~L~~l~l~~~~ 223 (249)
+++|.+.+. ++..+. .+++|++|++++|.
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 666655432 334442 25566666666654
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-18 Score=146.75 Aligned_cols=70 Identities=14% Similarity=0.081 Sum_probs=39.1
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccc-------------cccccccCC-CCcchhcCCCccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNL-------------IFISALHPS-SCTPDILGRLPSV 65 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~-~~~~~~l~~l~~L 65 (249)
++++.++++|++++++++|++| +++| .+.+.+|.+++.+.+| ++|++.++. ..+|.. .++|
T Consensus 18 l~~n~l~~iP~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~---~~~L 93 (454)
T 1jl5_A 18 RHSSNLTEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL---PPHL 93 (454)
T ss_dssp ----------------CCHHHHHHHHH-HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC---CTTC
T ss_pred cccCchhhCChhHhcccchhhhhccCC-cccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC---cCCC
Confidence 3578899999999999999999 9988 8888999999988876 677755555 444431 2466
Q ss_pred CeEEEecCc
Q 039403 66 QTLRISGNL 74 (249)
Q Consensus 66 ~~L~l~~~~ 74 (249)
+.|++++|.
T Consensus 94 ~~L~l~~n~ 102 (454)
T 1jl5_A 94 ESLVASCNS 102 (454)
T ss_dssp SEEECCSSC
T ss_pred CEEEccCCc
Confidence 666666664
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-20 Score=154.54 Aligned_cols=217 Identities=16% Similarity=0.101 Sum_probs=160.6
Q ss_pred CCCCCccc-----cchhhhhcccccee-eecC--cccCCCCCCcC-------CCCccccccccccCC-CC-----cchhc
Q 039403 1 MPSSYIDQ-----SPEDIWMMQKLMHL-NFGC--ITLPAPPKNYF-------SSLKNLIFISALHPS-SC-----TPDIL 59 (249)
Q Consensus 1 l~~~~l~~-----lp~~i~~l~~L~~L-l~~~--~~~~~~~~~~~-------~~l~~L~~L~l~~~~-~~-----~~~~l 59 (249)
|+++.++. ++..+..+++|++| +++| +.+.+.+|..+ ..+++|++|++.++. +. ++..+
T Consensus 39 L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 118 (386)
T 2ca6_A 39 LSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118 (386)
T ss_dssp CTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHH
Confidence 34555554 45567789999999 8886 24444556554 688999999966666 33 67788
Q ss_pred CCCcccCeEEEecCccccccc----hhhhhcCC---------CCCcEEEEecCCCceeeee-----cCCCCCCCccEEEE
Q 039403 60 GRLPSVQTLRISGNLSCYHSG----VSKSLCEL---------HKLECLKLVNESKLSRMVL-----SEYQFPPSLIQLSL 121 (249)
Q Consensus 60 ~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l---------~~L~~L~l~~~~~L~~l~l-----~~~~~~~~L~~L~l 121 (249)
..+++|+.|++++|. .... ++..+..+ ++|+.|+++++. +....+ .+.. +++|+.|++
T Consensus 119 ~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~-~~~L~~L~L 194 (386)
T 2ca6_A 119 SKHTPLEHLYLHNNG--LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQS-HRLLHTVKM 194 (386)
T ss_dssp HHCTTCCEEECCSSC--CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHH-CTTCCEEEC
T ss_pred HhCCCCCEEECcCCC--CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHh-CCCcCEEEC
Confidence 899999999999996 5432 33444455 899999999976 542111 4556 889999999
Q ss_pred EcccCCCC----Ccc-cccCCCCCceEEeeccccCCc---eeeeeCCCCCCcccEEEeccCCcccc-----eeccC--cc
Q 039403 122 SNTELMED----PMP-MLERLPRLQVLKLKRNSYLGR---KLACAGSGGFPELKVLHLKSMYWLDE-----WTMGA--GA 186 (249)
Q Consensus 122 ~~~~~~~~----~~~-~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~--~~ 186 (249)
++|.++.. ..+ .+..+++|+.|++++|.++.. .++.. +..+++|++|++++ +.++. ++..+ +.
T Consensus 195 ~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLND-CLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp CSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEEECTT-CCCCHHHHHHHHHHHHTCS
T ss_pred cCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH-HccCCCcCEEECCC-CCCchhhHHHHHHHHhhcc
Confidence 99988632 223 778899999999999988521 12445 67889999999999 55652 35555 34
Q ss_pred cccccceeeccCcCcC----CCcccc-ccCcCccEEEccCCc
Q 039403 187 LPKLESLIVNPCAYLR----KLPEEL-WCIKSLRKLDLHWPQ 223 (249)
Q Consensus 187 ~~~L~~L~l~~~~~~~----~l~~~l-~~l~~L~~l~l~~~~ 223 (249)
+++|++|++++|.+.+ .+|..+ ..+++|++|++++|+
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 8999999999999876 477777 568999999999995
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-20 Score=151.17 Aligned_cols=213 Identities=19% Similarity=0.208 Sum_probs=160.6
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCC-CCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAP-PKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~ 76 (249)
++++.++..+..+..+++|++| +++| .+.+. ++..+..+++|++|++.++. +..+..+..+++|++|++++|..
T Consensus 77 l~~n~l~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~- 154 (336)
T 2ast_B 77 CPRSFMDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG- 154 (336)
T ss_dssp CTTCEECSCCCSCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBS-
T ss_pred cCCccccccchhhccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCC-
Confidence 4577788888888899999999 9888 67654 77778899999999976666 45777888999999999999840
Q ss_pred ccc-chhhhhcCCCCCcEEEEecC-CCceee--eecCCCCCC-CccEEEEEcc--cCC-CCCcccccCCCCCceEEeecc
Q 039403 77 YHS-GVSKSLCELHKLECLKLVNE-SKLSRM--VLSEYQFPP-SLIQLSLSNT--ELM-EDPMPMLERLPRLQVLKLKRN 148 (249)
Q Consensus 77 ~~~-~~~~~l~~l~~L~~L~l~~~-~~L~~l--~l~~~~~~~-~L~~L~l~~~--~~~-~~~~~~~~~l~~L~~L~l~~~ 148 (249)
... .++..+..+++|++|+++++ . +... ...+.. ++ +|+.|++++| .++ ...+..+..+++|+.|++++|
T Consensus 155 l~~~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~-l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 232 (336)
T 2ast_B 155 FSEFALQTLLSSCSRLDELNLSWCFD-FTEKHVQVAVAH-VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 232 (336)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCCCTT-CCHHHHHHHHHH-SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred CCHHHHHHHHhcCCCCCEEcCCCCCC-cChHHHHHHHHh-cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC
Confidence 333 46777889999999999997 5 6642 224666 88 9999999999 454 245566778999999999999
Q ss_pred c-cCCceeeeeCCCCCCcccEEEeccCCccc-ceeccCcccccccceeeccCcCcCCCccccccC-cCccEEEccCCc
Q 039403 149 S-YLGRKLACAGSGGFPELKVLHLKSMYWLD-EWTMGAGALPKLESLIVNPCAYLRKLPEELWCI-KSLRKLDLHWPQ 223 (249)
Q Consensus 149 ~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l-~~L~~l~l~~~~ 223 (249)
. +++.. +.. +..+++|++|++++|..+. .....+..+++|+.|++++| +... .+..+ ..+..+++++|.
T Consensus 233 ~~l~~~~-~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 233 VMLKNDC-FQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSH 304 (336)
T ss_dssp TTCCGGG-GGG-GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCC
T ss_pred CcCCHHH-HHH-HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEeccc
Confidence 8 55544 445 7788999999999975444 22335678999999999999 4432 22223 235556677764
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=130.88 Aligned_cols=167 Identities=20% Similarity=0.200 Sum_probs=139.3
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CC-cchhcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SC-TPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
+++.++++|..+. ++++.| +.+| .+.+..+..++.+++|++|++.++. .. .+..+.++++|+.|++++|. ..
T Consensus 22 ~~~~l~~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~ 96 (251)
T 3m19_A 22 QGKSLDSVPSGIP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ--LA 96 (251)
T ss_dssp TTCCCSSCCSCCC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CC
T ss_pred CCCCccccCCCCC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc--cc
Confidence 5788999998876 699999 8888 8887777889999999999966666 44 44557899999999999996 65
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLAC 157 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 157 (249)
...+..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.. +.
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~ 173 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDR-LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP-HG 173 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TT
T ss_pred ccChhHhcccCCCCEEEcCCCc-CCCcChhHhcc-CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC-HH
Confidence 5555678899999999999988 887765 4677 899999999999998655567899999999999999987643 44
Q ss_pred eCCCCCCcccEEEeccCCccc
Q 039403 158 AGSGGFPELKVLHLKSMYWLD 178 (249)
Q Consensus 158 ~~~~~~~~L~~L~l~~~~~~~ 178 (249)
. +..+++|+.|++++ |.+.
T Consensus 174 ~-~~~l~~L~~L~l~~-N~~~ 192 (251)
T 3m19_A 174 A-FDRLGKLQTITLFG-NQFD 192 (251)
T ss_dssp T-TTTCTTCCEEECCS-CCBC
T ss_pred H-HhCCCCCCEEEeeC-Ccee
Confidence 5 77899999999999 4443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=128.38 Aligned_cols=182 Identities=15% Similarity=0.116 Sum_probs=145.3
Q ss_pred CCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccccccchh-hhhcCCCCCcEEEEec-CCCceee
Q 039403 30 PAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYHSGVS-KSLCELHKLECLKLVN-ESKLSRM 105 (249)
Q Consensus 30 ~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~-~~~L~~l 105 (249)
...+|. +. .+|++|++.++. ..++. .+.++++|+.|++++|. ....++ ..+..+++|+.|++++ +. ++.+
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~--~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i 96 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV--TLQQLESHSFYNLSKVTHIEIRNTRN-LTYI 96 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS--SCCEECTTTEESCTTCCEEEEEEETT-CCEE
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC--CcceeCHhHcCCCcCCcEEECCCCCC-eeEc
Confidence 446776 43 489999966666 65655 68899999999999994 355554 4788999999999998 77 8887
Q ss_pred ee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCc---eEEeecc-ccCCceeeeeCCCCCCccc-EEEeccCCcccc
Q 039403 106 VL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQ---VLKLKRN-SYLGRKLACAGSGGFPELK-VLHLKSMYWLDE 179 (249)
Q Consensus 106 ~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~ 179 (249)
.. .+.. +++|+.|++++|.+++ .|. +..+++|+ .|++++| .+.+-. +.. +..+++|+ .|++++ +.++.
T Consensus 97 ~~~~f~~-l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-~~~-~~~l~~L~~~L~l~~-n~l~~ 170 (239)
T 2xwt_C 97 DPDALKE-LPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIP-VNA-FQGLCNETLTLKLYN-NGFTS 170 (239)
T ss_dssp CTTSEEC-CTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEEC-TTT-TTTTBSSEEEEECCS-CCCCE
T ss_pred CHHHhCC-CCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcC-ccc-ccchhcceeEEEcCC-CCCcc
Confidence 75 6778 9999999999999974 554 88888888 9999999 665422 445 77899999 999999 78888
Q ss_pred eeccCcccccccceeeccCc-CcCCCccccccC-cCccEEEccCCc
Q 039403 180 WTMGAGALPKLESLIVNPCA-YLRKLPEELWCI-KSLRKLDLHWPQ 223 (249)
Q Consensus 180 ~~~~~~~~~~L~~L~l~~~~-~~~~l~~~l~~l-~~L~~l~l~~~~ 223 (249)
++......++|+.|++++|+ +...-+..+..+ ++|+++++++|.
T Consensus 171 i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 88766555899999999996 664334567788 999999999985
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-18 Score=138.41 Aligned_cols=189 Identities=17% Similarity=0.101 Sum_probs=147.1
Q ss_pred CCCCcc-ccchhh--hhcccccee-eecCcccCCCCC----CcCCCCccccccccccCC-C-CcchhcCCCcccCeEEEe
Q 039403 2 PSSYID-QSPEDI--WMMQKLMHL-NFGCITLPAPPK----NYFSSLKNLIFISALHPS-S-CTPDILGRLPSVQTLRIS 71 (249)
Q Consensus 2 ~~~~l~-~lp~~i--~~l~~L~~L-l~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~~L~l~ 71 (249)
+++.++ ..|..+ ..+++|++| +++| .+.+..+ ..+..+++|++|++.++. . ..+..++.+++|++|+++
T Consensus 99 ~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 177 (310)
T 4glp_A 99 EDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLS 177 (310)
T ss_dssp ESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECC
T ss_pred eCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECC
Confidence 456665 556666 899999999 9998 7776544 344579999999976666 4 445678899999999999
Q ss_pred cCccccccc--hh--hhhcCCCCCcEEEEecCCCceeeee----cCCCCCCCccEEEEEcccCCCCCcccccCC---CCC
Q 039403 72 GNLSCYHSG--VS--KSLCELHKLECLKLVNESKLSRMVL----SEYQFPPSLIQLSLSNTELMEDPMPMLERL---PRL 140 (249)
Q Consensus 72 ~~~~~~~~~--~~--~~l~~l~~L~~L~l~~~~~L~~l~l----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l---~~L 140 (249)
+|. ..+. ++ ..+..+++|++|+++++. ++.+.. .+.. +++|++|++++|.+++..|..+..+ ++|
T Consensus 178 ~N~--l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~-l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L 253 (310)
T 4glp_A 178 DNP--GLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAA-GVQPHSLDLSHNSLRATVNPSAPRCMWSSAL 253 (310)
T ss_dssp SCT--TCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHH-TCCCSSEECTTSCCCCCCCSCCSSCCCCTTC
T ss_pred CCC--CccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhc-CCCCCEEECCCCCCCccchhhHHhccCcCcC
Confidence 996 4332 32 234689999999999987 765443 2356 7899999999999987667777776 699
Q ss_pred ceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcC
Q 039403 141 QVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 141 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
++|++++|.+.. . +.. + +++|++|++++ |.++.+|. ...+++|+.|++++|+++.
T Consensus 254 ~~L~Ls~N~l~~-l-p~~-~--~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 254 NSLNLSFAGLEQ-V-PKG-L--PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCEECCSSCCCS-C-CSC-C--CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CEEECCCCCCCc-h-hhh-h--cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 999999999873 3 444 3 48999999999 78887765 6788999999999999764
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-17 Score=123.51 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=124.6
Q ss_pred CCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCC
Q 039403 60 GRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPR 139 (249)
Q Consensus 60 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 139 (249)
..+++|+.|++++|. .. .++ .+..+++|+.|+++++. +..+. .+.. +++|+.|++++|.+++..+..++.+++
T Consensus 41 ~~l~~L~~L~l~~n~--i~-~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 41 AQMNSLTYITLANIN--VT-DLT-GIEYAHNIKDLTINNIH-ATNYN-PISG-LSNLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp HHHHTCCEEEEESSC--CS-CCT-TGGGCTTCSEEEEESCC-CSCCG-GGTT-CTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred hhcCCccEEeccCCC--cc-ChH-HHhcCCCCCEEEccCCC-CCcch-hhhc-CCCCCEEEeECCccCcccChhhcCCCC
Confidence 567888999998885 33 455 58888999999998875 66554 6777 899999999999988667888899999
Q ss_pred CceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEc
Q 039403 140 LQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDL 219 (249)
Q Consensus 140 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l 219 (249)
|++|++++|.+.+.. +.. +..+++|++|++++|..++.++ .+..+++|+.|++++|.+.+ ++ .+..+++|+++++
T Consensus 114 L~~L~Ls~n~i~~~~-~~~-l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 114 LTLLDISHSAHDDSI-LTK-INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYA 188 (197)
T ss_dssp CCEEECCSSBCBGGG-HHH-HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEE
T ss_pred CCEEEecCCccCcHh-HHH-HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEe
Confidence 999999999887655 556 7789999999999954478777 57889999999999999764 55 6788999999999
Q ss_pred cCCc
Q 039403 220 HWPQ 223 (249)
Q Consensus 220 ~~~~ 223 (249)
++|.
T Consensus 189 ~~N~ 192 (197)
T 4ezg_A 189 FSQT 192 (197)
T ss_dssp CBC-
T ss_pred eCcc
Confidence 9996
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-17 Score=131.22 Aligned_cols=179 Identities=20% Similarity=0.219 Sum_probs=133.3
Q ss_pred CCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccch
Q 039403 4 SYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGV 81 (249)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (249)
..++.++ ....+++|+.| +.+| .+. .++ .++.+++|++|++.++. ..++. +.++++|+.|++++|. . ..+
T Consensus 34 ~~~~~~~-~~~~l~~L~~L~l~~~-~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~--l-~~~ 105 (291)
T 1h6t_A 34 KSVTDAV-TQNELNSIDQIIANNS-DIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK--V-KDL 105 (291)
T ss_dssp SCTTSEE-CHHHHHTCCEEECTTS-CCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--C-CCG
T ss_pred CCccccc-chhhcCcccEEEccCC-Ccc-cCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc--C-CCC
Confidence 3444433 24678888888 7777 554 343 47788899999866666 55555 7888999999998885 3 334
Q ss_pred hhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCC
Q 039403 82 SKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSG 161 (249)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 161 (249)
+ .+..+++|+.|+++++. +..+. .+.. +++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.. . +.
T Consensus 106 ~-~l~~l~~L~~L~L~~n~-i~~~~-~l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~---~-l~ 175 (291)
T 1h6t_A 106 S-SLKDLKKLKSLSLEHNG-ISDIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---P-LA 175 (291)
T ss_dssp G-GGTTCTTCCEEECTTSC-CCCCG-GGGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG---G-GT
T ss_pred h-hhccCCCCCEEECCCCc-CCCCh-hhcC-CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch---h-hc
Confidence 3 48888899999998877 76654 5667 88899999999888742 67788888999999888876632 3 56
Q ss_pred CCCcccEEEeccCCcccceeccCcccccccceeeccCcCcC
Q 039403 162 GFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
.+++|+.|++++ +.++.++. +..+++|+.|++++|++..
T Consensus 176 ~l~~L~~L~L~~-N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 176 GLTKLQNLYLSK-NHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCTTCCEEECCS-SCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred CCCccCEEECCC-CcCCCChh-hccCCCCCEEECcCCcccC
Confidence 788899999988 67777764 6778889999998888654
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8.9e-17 Score=136.81 Aligned_cols=202 Identities=20% Similarity=0.207 Sum_probs=98.8
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++++.++.+| +++.+++|++| +++| .+.+ +|..+ .+|++|++.++. ..+| .++++++|+.|++++|. ..
T Consensus 138 L~~n~l~~lp-~~~~l~~L~~L~l~~N-~l~~-lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~--l~ 208 (454)
T 1jl5_A 138 VSNNQLEKLP-ELQNSSFLKIIDVDNN-SLKK-LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS--LK 208 (454)
T ss_dssp CCSSCCSSCC-CCTTCTTCCEEECCSS-CCSC-CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC--CS
T ss_pred CcCCCCCCCc-ccCCCCCCCEEECCCC-cCcc-cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc--CC
Confidence 3566777777 47777777777 6666 5542 44322 355555544333 3343 35555555555555553 11
Q ss_pred -------------------cchhhhhcCCCCCcEEEEecCCCcee----------eee------cCCCCCCCccEEEEEc
Q 039403 79 -------------------SGVSKSLCELHKLECLKLVNESKLSR----------MVL------SEYQFPPSLIQLSLSN 123 (249)
Q Consensus 79 -------------------~~~~~~l~~l~~L~~L~l~~~~~L~~----------l~l------~~~~~~~~L~~L~l~~ 123 (249)
..+| .+..+++|+.|+++++. +.. +.+ .+...+++|+.|++++
T Consensus 209 ~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~ 286 (454)
T 1jl5_A 209 KLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSE 286 (454)
T ss_dssp SCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred cCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc-CCcccccccccCEEECCCCcccccCcccCcCCEEECcC
Confidence 1233 25556666666666643 222 211 1111023344444444
Q ss_pred ccCCC--CCcccc-------------cCC-CCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCccc
Q 039403 124 TELME--DPMPML-------------ERL-PRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGAL 187 (249)
Q Consensus 124 ~~~~~--~~~~~~-------------~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 187 (249)
|.+++ ..+..+ ..+ ++|+.|++++|.+.+ . + ..+++|++|++++ +.++.+|. .+
T Consensus 287 N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-l-p----~~~~~L~~L~L~~-N~l~~lp~---~l 356 (454)
T 1jl5_A 287 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-L-P----ALPPRLERLIASF-NHLAEVPE---LP 356 (454)
T ss_dssp SCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-C-C----CCCTTCCEEECCS-SCCSCCCC---CC
T ss_pred CccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-c-c----ccCCcCCEEECCC-Cccccccc---hh
Confidence 44432 111110 011 244455554444432 1 1 1246677777777 56666665 46
Q ss_pred ccccceeeccCcCcC--CCccccccC-------------cCccEEEccCCc
Q 039403 188 PKLESLIVNPCAYLR--KLPEELWCI-------------KSLRKLDLHWPQ 223 (249)
Q Consensus 188 ~~L~~L~l~~~~~~~--~l~~~l~~l-------------~~L~~l~l~~~~ 223 (249)
++|+.|++++|++.+ .+|..++.+ ++|+++++++|.
T Consensus 357 ~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 357 QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred hhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 788888888888877 677777776 778888888886
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=139.85 Aligned_cols=197 Identities=21% Similarity=0.162 Sum_probs=114.6
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++++.++++|..+. ++|+.| +++| .+. .+|. .+++|++|++.++. ..+|. .+++|++|++++|. .
T Consensus 47 ls~n~L~~lp~~l~--~~L~~L~L~~N-~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~--l- 113 (622)
T 3g06_A 47 VGESGLTTLPDCLP--AHITTLVIPDN-NLT-SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP--L- 113 (622)
T ss_dssp CCSSCCSCCCSCCC--TTCSEEEECSC-CCS-CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC--C-
T ss_pred ecCCCcCccChhhC--CCCcEEEecCC-CCC-CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc--C-
Confidence 35666777776654 677777 6666 554 4554 45666666644444 44544 45566666666653 1
Q ss_pred cchhhh---hc--------------CCCCCcEEEEecCCCceeeee----------------cCCCCCCCccEEEEEccc
Q 039403 79 SGVSKS---LC--------------ELHKLECLKLVNESKLSRMVL----------------SEYQFPPSLIQLSLSNTE 125 (249)
Q Consensus 79 ~~~~~~---l~--------------~l~~L~~L~l~~~~~L~~l~l----------------~~~~~~~~L~~L~l~~~~ 125 (249)
..+|.. +. .+++|+.|+++++. +..++. .+...+++|+.|++++|.
T Consensus 114 ~~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 114 THLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ 192 (622)
T ss_dssp CCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CCCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC
Confidence 112210 00 12445555555433 222111 000102455666666665
Q ss_pred CCCCCccccc-----------------CCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccc
Q 039403 126 LMEDPMPMLE-----------------RLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALP 188 (249)
Q Consensus 126 ~~~~~~~~~~-----------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 188 (249)
+++ .+..+. .+++|+.|++++|.+.+ . + ..+++|+.|++++ |.++.+|. .++
T Consensus 193 l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-l-p----~~l~~L~~L~Ls~-N~L~~lp~---~~~ 261 (622)
T 3g06_A 193 LAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-L-P----VLPSELKELMVSG-NRLTSLPM---LPS 261 (622)
T ss_dssp CSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-C-C----CCCTTCCEEECCS-SCCSCCCC---CCT
T ss_pred CCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-C-C----CCCCcCcEEECCC-CCCCcCCc---ccc
Confidence 542 221110 12456666666665543 1 1 2457788888888 57777776 568
Q ss_pred cccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 189 KLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 189 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+|+.|++++|.+. .+|..+..+++|+.+++++|+
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence 8999999999977 789889999999999999996
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=128.48 Aligned_cols=169 Identities=23% Similarity=0.262 Sum_probs=141.4
Q ss_pred CCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCC
Q 039403 37 FSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPS 115 (249)
Q Consensus 37 ~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~ 115 (249)
...+++|+.|++.++. ..++ .+..+++|+.|++++|. ... ++. +..+++|+.|+++++. +..+. .+.. +++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~--l~~-~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~-l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK--LTD-IKP-LANLKNLGWLFLDENK-VKDLS-SLKD-LKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC--CCC-CGG-GTTCTTCCEEECCSSC-CCCGG-GGTT-CTT
T ss_pred hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc--cCC-Ccc-cccCCCCCEEECCCCc-CCCCh-hhcc-CCC
Confidence 4568899999966666 5554 57889999999999996 444 444 8899999999999987 77765 5778 999
Q ss_pred ccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceee
Q 039403 116 LIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIV 195 (249)
Q Consensus 116 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 195 (249)
|+.|++++|.+++ ...+..+++|+.|++++|.+.+. .. +..+++|++|++++ +.++.++. +..+++|+.|++
T Consensus 114 L~~L~L~~n~i~~--~~~l~~l~~L~~L~l~~n~l~~~---~~-l~~l~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~L 185 (291)
T 1h6t_A 114 LKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI---TV-LSRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYL 185 (291)
T ss_dssp CCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC---GG-GGGCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEEC
T ss_pred CCEEECCCCcCCC--ChhhcCCCCCCEEEccCCcCCcc---hh-hccCCCCCEEEccC-Cccccchh-hcCCCccCEEEC
Confidence 9999999999974 36788999999999999998763 45 77899999999999 67887766 888999999999
Q ss_pred ccCcCcCCCccccccCcCccEEEccCCc
Q 039403 196 NPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 196 ~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
++|.+.+ ++. +..+++|+.+++++|+
T Consensus 186 ~~N~i~~-l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 186 SKNHISD-LRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CSSCCCB-CGG-GTTCTTCSEEEEEEEE
T ss_pred CCCcCCC-Chh-hccCCCCCEEECcCCc
Confidence 9999764 554 8899999999999985
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=140.13 Aligned_cols=180 Identities=19% Similarity=0.218 Sum_probs=112.5
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSG 80 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (249)
.+.+..++. +..+++|+.| +..| .+. .++ .++.+++|+.|++.++. ..+++ +..+++|+.|++++|. .. .
T Consensus 30 ~~~i~~~~~-~~~L~~L~~L~l~~n-~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~--l~-~ 101 (605)
T 1m9s_A 30 KKSVTDAVT-QNELNSIDQIIANNS-DIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK--IK-D 101 (605)
T ss_dssp CSCTTSEEC-HHHHTTCCCCBCTTC-CCC-CCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC--CC-C
T ss_pred CCCcccccc-hhcCCCCCEEECcCC-CCC-CCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC--CC-C
Confidence 344444443 4667777777 6665 443 233 46667777777755555 44444 6677777777777774 32 2
Q ss_pred hhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCC
Q 039403 81 VSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGS 160 (249)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 160 (249)
++ .+..+++|+.|+++++. +..+. .+.. +++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.. . +
T Consensus 102 l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~---~-l 171 (605)
T 1m9s_A 102 LS-SLKDLKKLKSLSLEHNG-ISDIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---P-L 171 (605)
T ss_dssp CT-TSTTCTTCCEEECTTSC-CCCCG-GGGG-CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG---G-G
T ss_pred Ch-hhccCCCCCEEEecCCC-CCCCc-cccC-CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch---h-h
Confidence 33 56667777777777765 55543 4556 67777777777776532 56667777777777777665532 2 4
Q ss_pred CCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcC
Q 039403 161 GGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 161 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
..+++|+.|++++ |.++.++ .+..+++|+.|+|++|++.+
T Consensus 172 ~~l~~L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 172 AGLTKLQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TTCTTCCEEECCS-SCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred ccCCCCCEEECcC-CCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 5667777777777 4666554 35667777777777776544
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=121.18 Aligned_cols=160 Identities=17% Similarity=0.167 Sum_probs=110.0
Q ss_pred ccccccccccCC-CCcch-hcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCcc
Q 039403 41 KNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLI 117 (249)
Q Consensus 41 ~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~ 117 (249)
++|++|++.++. ..++. .+.++++|++|++++|. .....+..+..+++|++|+++++. ++.+.. .+.. +++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~-l~~L~ 103 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK--LQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDK-LTQLK 103 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT-CTTCC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc--cCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcC-ccCCC
Confidence 466777754444 43433 35667777777777775 443333445677777777777766 665544 3566 77888
Q ss_pred EEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeecc
Q 039403 118 QLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNP 197 (249)
Q Consensus 118 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 197 (249)
+|++++|.+++..+..+..+++|+.|++++|.+.+.. +.. +..+++|++|+++++ . ..+.++.|+.|+++.
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~-~~~l~~L~~L~l~~N-~------~~~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DGV-FDRLTSLQYIWLHDN-P------WDCTCPGIRYLSEWI 174 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTT-TTTCTTCCEEECCSC-C------BCCCTTTTHHHHHHH
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC-HHH-hccCCCccEEEecCC-C------eecCCCCHHHHHHHH
Confidence 8888888887545555778888888888888776533 344 667888889988884 2 234677888999988
Q ss_pred CcCcCCCccccccCcC
Q 039403 198 CAYLRKLPEELWCIKS 213 (249)
Q Consensus 198 ~~~~~~l~~~l~~l~~ 213 (249)
|.+.+.+|+.++.++.
T Consensus 175 n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 175 NKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHCTTTBBCTTSSBCT
T ss_pred HhCCceeeccCccccC
Confidence 8888888887776654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=131.81 Aligned_cols=207 Identities=18% Similarity=0.194 Sum_probs=109.3
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcch-hcCCCcccCeEE-EecCcccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPD-ILGRLPSVQTLR-ISGNLSCY 77 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~-~l~~l~~L~~L~-l~~~~~~~ 77 (249)
++++++||..+ .+++++| +++| .+...-+.+++++++|++|++.++. +.++. .|.++++++++. +..|. .
T Consensus 18 ~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~--l 92 (350)
T 4ay9_X 18 ESKVTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN--L 92 (350)
T ss_dssp STTCCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT--C
T ss_pred CCCCCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc--c
Confidence 56788888776 3678888 7777 6663333457788888888865555 33443 456777776644 44453 4
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCC--------------------------ccEEEEEcccCCCCC
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPS--------------------------LIQLSLSNTELMEDP 130 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~--------------------------L~~L~l~~~~~~~~~ 130 (249)
....+..+..+++|+.|+++++. ++.+.. .+.. ..+ ++.|++++|.++ ..
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~-~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i 169 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIH-SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EI 169 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCC-BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EE
T ss_pred cccCchhhhhccccccccccccc-cccCCchhhcc-cchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CC
Confidence 33345667788888888887755 443332 1112 223 444444444443 22
Q ss_pred cccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCcccccc
Q 039403 131 MPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWC 210 (249)
Q Consensus 131 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~ 210 (249)
+.......+++.+.+.++...+...... +..+++|++|++++ |.++.+|.. .+.+|+.|.+.++.-.+.+|. +..
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~-N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~ 244 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISR-TRIHSLPSY--GLENLKKLRARSTYNLKKLPT-LEK 244 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTT-TTTEECCSEEECTT-SCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTT
T ss_pred ChhhccccchhHHhhccCCcccCCCHHH-hccCcccchhhcCC-CCcCccChh--hhccchHhhhccCCCcCcCCC-chh
Confidence 2222233344444444322222221222 34445555555555 344444432 233344444433333334443 556
Q ss_pred CcCccEEEccCC
Q 039403 211 IKSLRKLDLHWP 222 (249)
Q Consensus 211 l~~L~~l~l~~~ 222 (249)
+++|+.+++.++
T Consensus 245 l~~L~~l~l~~~ 256 (350)
T 4ay9_X 245 LVALMEASLTYP 256 (350)
T ss_dssp CCSCCEEECSCH
T ss_pred CcChhhCcCCCC
Confidence 677888887654
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.1e-18 Score=140.46 Aligned_cols=146 Identities=18% Similarity=0.197 Sum_probs=67.4
Q ss_pred CCCCccccchh-hhhcccccee-eecCcccCCCCC----CcCCCCc-cccccccccCC--CCcchhcCCC-----cccCe
Q 039403 2 PSSYIDQSPED-IWMMQKLMHL-NFGCITLPAPPK----NYFSSLK-NLIFISALHPS--SCTPDILGRL-----PSVQT 67 (249)
Q Consensus 2 ~~~~l~~lp~~-i~~l~~L~~L-l~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~--~~~~~~l~~l-----~~L~~ 67 (249)
+++.++..++. +...++|++| +++| .+.+..+ ..+..++ +|++|++.++. ...+..+..+ ++|++
T Consensus 6 s~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 6 TLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred ccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 44555533333 3333336666 6666 5544333 4445555 66666644444 2223333332 66666
Q ss_pred EEEecCccccccchhh----hhcCC-CCCcEEEEecCCCceeeee-----cCCCCCCCccEEEEEcccCCCCCcc----c
Q 039403 68 LRISGNLSCYHSGVSK----SLCEL-HKLECLKLVNESKLSRMVL-----SEYQFPPSLIQLSLSNTELMEDPMP----M 133 (249)
Q Consensus 68 L~l~~~~~~~~~~~~~----~l~~l-~~L~~L~l~~~~~L~~l~l-----~~~~~~~~L~~L~l~~~~~~~~~~~----~ 133 (249)
|++++|. .....+. .+..+ ++|+.|+++++. +..... .+..++++|++|++++|.+++.... .
T Consensus 85 L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 85 LNLSGNF--LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp EECCSSC--GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred EECcCCc--CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 6666664 3333222 23333 566666666644 433322 1222012455555555554432221 1
Q ss_pred ccCCC-CCceEEeeccccC
Q 039403 134 LERLP-RLQVLKLKRNSYL 151 (249)
Q Consensus 134 ~~~l~-~L~~L~l~~~~~~ 151 (249)
+..++ +|++|++++|.+.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHTSCTTCCEEECTTSCGG
T ss_pred HhcCCccccEeeecCCCCc
Confidence 22332 4555555555443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.9e-16 Score=137.01 Aligned_cols=169 Identities=23% Similarity=0.262 Sum_probs=142.0
Q ss_pred CCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCC
Q 039403 37 FSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPS 115 (249)
Q Consensus 37 ~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~ 115 (249)
+..+++|+.|++.++. ..++ .+..+++|+.|++++|. ... ++. +..+++|+.|+++++. +..++ .+.. +++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~--l~~-~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~-l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK--LTD-IKP-LTNLKNLGWLFLDENK-IKDLS-SLKD-LKK 110 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC--CCC-CGG-GGGCTTCCEEECCSSC-CCCCT-TSTT-CTT
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC--CCC-Chh-hccCCCCCEEECcCCC-CCCCh-hhcc-CCC
Confidence 4578899999966655 5554 68899999999999996 444 443 8899999999999987 77765 7788 999
Q ss_pred ccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceee
Q 039403 116 LIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIV 195 (249)
Q Consensus 116 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 195 (249)
|+.|+++.|.+.+ +..+..+++|+.|++++|.+.+. .. +..+++|+.|++++ +.++.++. +..+++|+.|+|
T Consensus 111 L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l---~~-l~~l~~L~~L~Ls~-N~l~~~~~-l~~l~~L~~L~L 182 (605)
T 1m9s_A 111 LKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI---TV-LSRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYL 182 (605)
T ss_dssp CCEEECTTSCCCC--CGGGGGCTTCSEEECCSSCCCCC---GG-GGSCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEEC
T ss_pred CCEEEecCCCCCC--CccccCCCccCEEECCCCccCCc---hh-hcccCCCCEEECcC-CcCCCchh-hccCCCCCEEEC
Confidence 9999999999974 46788999999999999998763 45 77899999999999 67776665 888999999999
Q ss_pred ccCcCcCCCccccccCcCccEEEccCCc
Q 039403 196 NPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 196 ~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
++|.+.+ ++ .+..+++|+.|++++|+
T Consensus 183 s~N~i~~-l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 183 SKNHISD-LR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CSSCCCB-CG-GGTTCTTCSEEECCSEE
T ss_pred cCCCCCC-Ch-HHccCCCCCEEEccCCc
Confidence 9999765 44 58899999999999985
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-16 Score=118.82 Aligned_cols=171 Identities=21% Similarity=0.190 Sum_probs=125.8
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~ 78 (249)
+++.++++|..+ .++|++| +++| .+.+..+..++.+++|++|++.++. ..++. .+..+++|++|++++|. ..
T Consensus 15 ~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~ 89 (208)
T 2o6s_A 15 YSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ--LQ 89 (208)
T ss_dssp CSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CC
T ss_pred cCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc--CC
Confidence 456778888665 4688888 8887 7775555567888999999966555 55554 45788899999999886 54
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLAC 157 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 157 (249)
...+..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|.+++..+..+..+++|+.|++.+|.+
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~------- 160 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDK-LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW------- 160 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-------
T ss_pred ccCHhHhcCccCCCEEEcCCCc-CcccCHhHhcc-CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-------
Confidence 4444557888899999998877 776654 3667 88899999999988755555578888999999888754
Q ss_pred eCCCCCCcccEEEeccCCccc-ceeccCccccc
Q 039403 158 AGSGGFPELKVLHLKSMYWLD-EWTMGAGALPK 189 (249)
Q Consensus 158 ~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~ 189 (249)
.+.++.|++|.++. +.++ .+|..++.++.
T Consensus 161 --~~~~~~l~~L~~~~-n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 161 --DCTCPGIRYLSEWI-NKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --CCCTTTTHHHHHHH-HHCTTTBBCTTSSBCT
T ss_pred --ecCCCCHHHHHHHH-HhCCceeeccCccccC
Confidence 33567788888887 4444 78877776554
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-18 Score=142.23 Aligned_cols=216 Identities=15% Similarity=0.092 Sum_probs=157.2
Q ss_pred CCCCCccccc-----hhhhhcc-cccee-eecCcccCCCCCCcCCCC-----ccccccccccCC-C-Ccchh----cCCC
Q 039403 1 MPSSYIDQSP-----EDIWMMQ-KLMHL-NFGCITLPAPPKNYFSSL-----KNLIFISALHPS-S-CTPDI----LGRL 62 (249)
Q Consensus 1 l~~~~l~~lp-----~~i~~l~-~L~~L-l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~-~-~~~~~----l~~l 62 (249)
|+++.++.++ ..+..++ +|++| +++| .+.+..+..++.+ ++|++|++.++. + ..+.. +..+
T Consensus 29 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 107 (362)
T 3goz_A 29 LSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAI 107 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred ccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhC
Confidence 5678888888 5788898 99999 9998 8877767666665 999999976666 3 33333 4455
Q ss_pred -cccCeEEEecCccccccchhhh----hcC-CCCCcEEEEecCCCceeeee-----cCCCCCC-CccEEEEEcccCCCCC
Q 039403 63 -PSVQTLRISGNLSCYHSGVSKS----LCE-LHKLECLKLVNESKLSRMVL-----SEYQFPP-SLIQLSLSNTELMEDP 130 (249)
Q Consensus 63 -~~L~~L~l~~~~~~~~~~~~~~----l~~-l~~L~~L~l~~~~~L~~l~l-----~~~~~~~-~L~~L~l~~~~~~~~~ 130 (249)
++|++|++++|. .....+.. +.. .++|++|+++++. +..... .+.. ++ +|+.|++++|.+++..
T Consensus 108 ~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 108 PFTITVLDLGWND--FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAA-IPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp CTTCCEEECCSSC--GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHT-SCTTCCEEECTTSCGGGSC
T ss_pred CCCccEEECcCCc--CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhc-CCccccEeeecCCCCchhh
Confidence 899999999997 54443433 444 3699999999976 663322 3444 54 8999999999997655
Q ss_pred ccc----ccCC-CCCceEEeeccccCCce---eeeeCCCC-CCcccEEEeccCCcccce-----eccCcccccccceeec
Q 039403 131 MPM----LERL-PRLQVLKLKRNSYLGRK---LACAGSGG-FPELKVLHLKSMYWLDEW-----TMGAGALPKLESLIVN 196 (249)
Q Consensus 131 ~~~----~~~l-~~L~~L~l~~~~~~~~~---~~~~~~~~-~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~ 196 (249)
+.. +..+ ++|+.|++++|.+.+.. ++.. +.. .++|++|++++ |.++.. ...+..+++|+.|+++
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~-l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI-FSSIPNHVVSLNLCL-NCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH-HHHSCTTCCEEECCS-SCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH-HhcCCCCceEEECcC-CCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 543 4455 59999999999987632 1222 223 46899999999 566633 3445678999999999
Q ss_pred cCcCcC-------CCccccccCcCccEEEccCCc
Q 039403 197 PCAYLR-------KLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 197 ~~~~~~-------~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+|.+.. .++..+..++.|+++++++|.
T Consensus 262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred cCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 998432 233456678899999999995
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=132.48 Aligned_cols=173 Identities=14% Similarity=0.134 Sum_probs=135.5
Q ss_pred cccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEE
Q 039403 18 KLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLK 95 (249)
Q Consensus 18 ~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (249)
+++.| +++| .+.+ +|..+. ++|++|++.++. ..+| ..+++|+.|++++|. +.. +|. +.. +|+.|+
T Consensus 60 ~L~~L~Ls~n-~L~~-lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~--l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRL-NLSS-LPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR--LST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSS-CCSC-CCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC--CSC-CCC-CCT--TCCEEE
T ss_pred CccEEEeCCC-CCCc-cCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC--CCC-cch-hhc--CCCEEE
Confidence 89999 8888 7764 777664 789999966666 7677 557899999999995 443 665 544 899999
Q ss_pred EecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCC
Q 039403 96 LVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMY 175 (249)
Q Consensus 96 l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 175 (249)
++++. +..++. . +++|+.|++++|.+++ .|. .+++|+.|++++|.+.+ . +.. . ++|+.|++++ |
T Consensus 127 Ls~N~-l~~lp~---~-l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l-p~l--~--~~L~~L~Ls~-N 190 (571)
T 3cvr_A 127 VDNNQ-LTMLPE---L-PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L-PEL--P--ESLEALDVST-N 190 (571)
T ss_dssp CCSSC-CSCCCC---C-CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C-CCC--C--TTCCEEECCS-S
T ss_pred CCCCc-CCCCCC---c-CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c-chh--h--CCCCEEECcC-C
Confidence 99987 777553 5 8899999999999874 444 57889999999998876 2 322 2 8899999999 6
Q ss_pred cccceeccCcccccc-------cceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 176 WLDEWTMGAGALPKL-------ESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 176 ~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.++.+|. +.. +| +.|++++|.+. .+|..+..+++|+.|++++|+
T Consensus 191 ~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 191 LLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSS
T ss_pred CCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCc
Confidence 8888887 543 67 99999999976 688888889999999999996
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-16 Score=137.07 Aligned_cols=180 Identities=17% Similarity=0.151 Sum_probs=144.6
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
|+++.++.+|..+ +++|+.| +++| .+. .+| ..+++|++|++.++. ..+|. +.. +|+.|++++|. ..
T Consensus 66 Ls~n~L~~lp~~l--~~~L~~L~Ls~N-~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~--l~ 133 (571)
T 3cvr_A 66 LNRLNLSSLPDNL--PPQITVLEITQN-ALI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ--LT 133 (571)
T ss_dssp CCSSCCSCCCSCC--CTTCSEEECCSS-CCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC--CS
T ss_pred eCCCCCCccCHhH--cCCCCEEECcCC-CCc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc--CC
Confidence 5688999999987 4899999 8888 777 677 557999999966666 66777 655 99999999996 44
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACA 158 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 158 (249)
+ +|. .+++|+.|+++++. +..++. . +++|+.|++++|.+++ .|. +. ++|+.|++++|.++. . +..
T Consensus 134 ~-lp~---~l~~L~~L~Ls~N~-l~~lp~---~-l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-l-p~~ 198 (571)
T 3cvr_A 134 M-LPE---LPALLEYINADNNQ-LTMLPE---L-PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES-L-PAV 198 (571)
T ss_dssp C-CCC---CCTTCCEEECCSSC-CSCCCC---C-CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS-C-CCC
T ss_pred C-CCC---cCccccEEeCCCCc-cCcCCC---c-CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc-h-hhH
Confidence 3 665 68999999999988 876552 4 7899999999999985 555 55 899999999998873 2 222
Q ss_pred CCCCCCcc-------cEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCc
Q 039403 159 GSGGFPEL-------KVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIK 212 (249)
Q Consensus 159 ~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~ 212 (249)
. .+| +.|++++ |.++.+|..+..+++|+.|++++|++.+.+|..++.+.
T Consensus 199 -~---~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 199 -P---VRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -C-----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred -H---HhhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 2 156 9999999 78999999888899999999999999887777666543
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.9e-16 Score=118.22 Aligned_cols=152 Identities=17% Similarity=0.245 Sum_probs=119.0
Q ss_pred CCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCC
Q 039403 37 FSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPP 114 (249)
Q Consensus 37 ~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~ 114 (249)
.+.+++|++|++.++. ..++ .+..+++|+.|++++|. . ..+ ..+..+++|++|+++++. +..... .+.. ++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~--~-~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~-l~ 112 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH--A-TNY-NPISGLSNLERLRIMGKD-VTSDKIPNLSG-LT 112 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC--C-SCC-GGGTTCTTCCEEEEECTT-CBGGGSCCCTT-CT
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC--C-Ccc-hhhhcCCCCCEEEeECCc-cCcccChhhcC-CC
Confidence 3667888888866655 6566 67888999999999884 3 223 367888999999999876 665222 6777 89
Q ss_pred CccEEEEEcccCCCCCcccccCCCCCceEEeeccc-cCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccce
Q 039403 115 SLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS-YLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESL 193 (249)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 193 (249)
+|+.|++++|.+++..+..++.+++|++|++++|. +.. . + . +..+++|++|++++ +.++.++ .+..+++|+.|
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~-~-~-l~~l~~L~~L~l~~-n~i~~~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-I-M-P-LKTLPELKSLNIQF-DGVHDYR-GIEDFPKLNQL 186 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-C-G-G-GGGCSSCCEEECTT-BCCCCCT-TGGGCSSCCEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-c-H-h-hcCCCCCCEEECCC-CCCcChH-HhccCCCCCEE
Confidence 99999999999986678889999999999999997 543 3 2 5 77889999999999 6777766 67789999999
Q ss_pred eeccCcCc
Q 039403 194 IVNPCAYL 201 (249)
Q Consensus 194 ~l~~~~~~ 201 (249)
++++|++.
T Consensus 187 ~l~~N~i~ 194 (197)
T 4ezg_A 187 YAFSQTIG 194 (197)
T ss_dssp EECBC---
T ss_pred EeeCcccC
Confidence 99999864
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=133.61 Aligned_cols=183 Identities=20% Similarity=0.181 Sum_probs=107.0
Q ss_pred cccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcE
Q 039403 16 MQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLEC 93 (249)
Q Consensus 16 l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 93 (249)
..+++.| ++++ .+. .+|..+. ++|++|++.++. ..+|. .+++|+.|++++|. . ..+|. .+++|+.
T Consensus 39 ~~~l~~L~ls~n-~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~--l-~~lp~---~l~~L~~ 105 (622)
T 3g06_A 39 NNGNAVLNVGES-GLT-TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ--L-TSLPV---LPPGLLE 105 (622)
T ss_dssp HHCCCEEECCSS-CCS-CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC--C-SCCCC---CCTTCCE
T ss_pred CCCCcEEEecCC-CcC-ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc--C-CcCCC---CCCCCCE
Confidence 3468899 8877 766 7887776 899999976666 66775 67999999999995 3 34554 6788999
Q ss_pred EEEecCCCceeee----------e------cCCCCCCCccEEEEEcccCCC--CCcccccC--------------CCCCc
Q 039403 94 LKLVNESKLSRMV----------L------SEYQFPPSLIQLSLSNTELME--DPMPMLER--------------LPRLQ 141 (249)
Q Consensus 94 L~l~~~~~L~~l~----------l------~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~--------------l~~L~ 141 (249)
|+++++. +..++ + .+...+++|++|++++|.+++ ..+..+.. +++|+
T Consensus 106 L~Ls~N~-l~~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~ 184 (622)
T 3g06_A 106 LSIFSNP-LTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQ 184 (622)
T ss_dssp EEECSCC-CCCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred EECcCCc-CCCCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCc
Confidence 9998865 44332 2 111113566666666666553 11111111 15566
Q ss_pred eEEeeccccCCceeeeeCC-----------------CCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCC
Q 039403 142 VLKLKRNSYLGRKLACAGS-----------------GGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKL 204 (249)
Q Consensus 142 ~L~l~~~~~~~~~~~~~~~-----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l 204 (249)
.|++++|.+.+- +.. + ..+++|+.|++++ |.++.+| ..+++|+.|++++|.+. .+
T Consensus 185 ~L~Ls~N~l~~l--~~~-~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~-N~L~~lp---~~l~~L~~L~Ls~N~L~-~l 256 (622)
T 3g06_A 185 ELSVSDNQLASL--PTL-PSELYKLWAYNNRLTSLPALPSGLKELIVSG-NRLTSLP---VLPSELKELMVSGNRLT-SL 256 (622)
T ss_dssp EEECCSSCCSCC--CCC-CTTCCEEECCSSCCSSCCCCCTTCCEEECCS-SCCSCCC---CCCTTCCEEECCSSCCS-CC
T ss_pred EEECCCCCCCCC--CCc-cchhhEEECcCCcccccCCCCCCCCEEEccC-CccCcCC---CCCCcCcEEECCCCCCC-cC
Confidence 666666655431 111 0 0113445555554 3444444 23455666666666544 34
Q ss_pred ccccccCcCccEEEccCCc
Q 039403 205 PEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 205 ~~~l~~l~~L~~l~l~~~~ 223 (249)
|. .+++|+.|++++|.
T Consensus 257 p~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 257 PM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp CC---CCTTCCEEECCSSC
T ss_pred Cc---ccccCcEEeCCCCC
Confidence 44 35666666666664
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.3e-16 Score=126.30 Aligned_cols=191 Identities=16% Similarity=0.113 Sum_probs=127.9
Q ss_pred eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccccccchh-hhhcCCCCCcEEEE-ec
Q 039403 23 NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYHSGVS-KSLCELHKLECLKL-VN 98 (249)
Q Consensus 23 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l-~~ 98 (249)
-+++ .++ ++|..+. +++++|++.++. ..+|. .|.++++|++|++++|. ..+.++ ..|.+++++..+.. ..
T Consensus 16 C~~~-~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~--i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 16 CQES-KVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND--VLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEST-TCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT--TCCEECTTSBCSCTTCCEEEEEEE
T ss_pred ecCC-CCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC--CCCccChhHhhcchhhhhhhcccC
Confidence 4444 444 7787663 689999966666 77776 57899999999999996 656554 45788998887554 44
Q ss_pred CCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCC-CcccEEEeccCCc
Q 039403 99 ESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGF-PELKVLHLKSMYW 176 (249)
Q Consensus 99 ~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~ 176 (249)
+. +..+.. .+.. +++|++|++++|.+....+..+....++..+++.++.......... +... ..++.|++++ +.
T Consensus 90 N~-l~~l~~~~f~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~-f~~~~~~l~~L~L~~-N~ 165 (350)
T 4ay9_X 90 NN-LLYINPEAFQN-LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS-FVGLSFESVILWLNK-NG 165 (350)
T ss_dssp TT-CCEECTTSBCC-CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS-STTSBSSCEEEECCS-SC
T ss_pred Cc-ccccCchhhhh-ccccccccccccccccCCchhhcccchhhhhhhccccccccccccc-hhhcchhhhhhcccc-cc
Confidence 55 888765 6778 9999999999999875444444445566677776533222221222 3333 3566777777 66
Q ss_pred ccceeccCcccccccceeeccCcCcCCCcc-ccccCcCccEEEccCCc
Q 039403 177 LDEWTMGAGALPKLESLIVNPCAYLRKLPE-ELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 177 ~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~l~l~~~~ 223 (249)
+++++.......+|+.+++.+|...+.+|. .+..+++|++|++++|.
T Consensus 166 i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 166 IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence 777776666666777777765544455654 45667777777777774
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-16 Score=139.03 Aligned_cols=131 Identities=18% Similarity=0.106 Sum_probs=68.5
Q ss_pred cccccccccCC-CCcc-hhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccE
Q 039403 42 NLIFISALHPS-SCTP-DILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQ 118 (249)
Q Consensus 42 ~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~ 118 (249)
++++|++.++. ..++ ..|.++++|++|++++|. .....+..|.++++|++|+++++. ++.++. +|.. +++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~--i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~-L~~L~~ 128 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG-LSSLQK 128 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTT-CTTCCE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc--CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcC-CCCCCE
Confidence 55556644433 3333 245556666666666553 333233445556666666666555 555554 3455 556666
Q ss_pred EEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc
Q 039403 119 LSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD 178 (249)
Q Consensus 119 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 178 (249)
|++++|.+++..+..++.+++|++|++++|.+.....+.. ++.+++|++|++++ +.++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~-N~l~ 186 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSS-NKIQ 186 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCS-SCCC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccC-cccc
Confidence 6666665553333345556666666666555543222333 44555566666665 3444
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-18 Score=147.95 Aligned_cols=208 Identities=17% Similarity=0.096 Sum_probs=115.2
Q ss_pred cchhhhhcccccee-eecCcccCCCCCCcCC-----CCccccccccccCC-CC-----cchhcCCCcccCeEEEecCccc
Q 039403 9 SPEDIWMMQKLMHL-NFGCITLPAPPKNYFS-----SLKNLIFISALHPS-SC-----TPDILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 9 lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~-~~-----~~~~l~~l~~L~~L~l~~~~~~ 76 (249)
++..+..+++|++| +++| .+....+..+. ..++|++|++.++. .. ++..+..+++|+.|++++|.
T Consensus 162 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-- 238 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-- 238 (461)
T ss_dssp HHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB--
T ss_pred HHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc--
Confidence 45555566666666 6555 44322222222 13466666644444 22 34455556666666666664
Q ss_pred cccch-----hhhhcCCCCCcEEEEecCCCcee-----eeecCCCCCCCccEEEEEcccCCCCCccccc-----CCCCCc
Q 039403 77 YHSGV-----SKSLCELHKLECLKLVNESKLSR-----MVLSEYQFPPSLIQLSLSNTELMEDPMPMLE-----RLPRLQ 141 (249)
Q Consensus 77 ~~~~~-----~~~l~~l~~L~~L~l~~~~~L~~-----l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~ 141 (249)
..... +..+..+++|+.|+++++. +.. +.-.+.. +++|+.|++++|.+++..+..+. ..++|+
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence 32221 1112245666666666654 443 2223444 56677777777665432222222 124677
Q ss_pred eEEeeccccCCce---eeeeCCCCCCcccEEEeccCCcccce-eccCc-----ccccccceeeccCcCcC----CCcccc
Q 039403 142 VLKLKRNSYLGRK---LACAGSGGFPELKVLHLKSMYWLDEW-TMGAG-----ALPKLESLIVNPCAYLR----KLPEEL 208 (249)
Q Consensus 142 ~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~-----~~~~L~~L~l~~~~~~~----~l~~~l 208 (249)
.|++++|.+++.. ++.. +..+++|++|++++ +.+++. +..+. ..+.|+.|++++|.+.+ .++..+
T Consensus 317 ~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l 394 (461)
T 1z7x_W 317 SLWVKSCSFTAACCSHFSSV-LAQNRFLLELQISN-NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHH-HHHCSSCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred eeEcCCCCCchHHHHHHHHH-HhhCCCccEEEccC-CccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH
Confidence 7777776665432 1223 44567888888887 455522 22222 15678888888888764 567777
Q ss_pred ccCcCccEEEccCCc
Q 039403 209 WCIKSLRKLDLHWPQ 223 (249)
Q Consensus 209 ~~l~~L~~l~l~~~~ 223 (249)
..+++|+++++++|.
T Consensus 395 ~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 395 LANHSLRELDLSNNC 409 (461)
T ss_dssp HHCCCCCEEECCSSS
T ss_pred HhCCCccEEECCCCC
Confidence 778888888888885
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-16 Score=123.39 Aligned_cols=168 Identities=18% Similarity=0.159 Sum_probs=122.6
Q ss_pred hcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCc
Q 039403 15 MMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLE 92 (249)
Q Consensus 15 ~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 92 (249)
.+.++..+ +..+ .+. .++ .+..+++|++|++.++. ..++ .+..+++|+.|++++|. ..+ ++. +..+++|+
T Consensus 17 ~l~~l~~l~l~~~-~i~-~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~--i~~-~~~-l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-SVT-DLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ--ISD-LSP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCS-CTT-SEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC--CCC-CGG-GTTCSSCC
T ss_pred HHHHHHHHHhcCC-Ccc-ccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc--cCC-Chh-hccCCCCC
Confidence 45566666 6665 444 333 56778889999866655 5555 67788899999999885 433 444 88889999
Q ss_pred EEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEec
Q 039403 93 CLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLK 172 (249)
Q Consensus 93 ~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 172 (249)
.|+++++. ++.++. + . .++|+.|++++|.+++ ...+..+++|+.|++++|.+.+. .. +..+++|++|+++
T Consensus 89 ~L~L~~N~-l~~l~~-~-~-~~~L~~L~L~~N~l~~--~~~l~~l~~L~~L~Ls~N~i~~~---~~-l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 89 ELSVNRNR-LKNLNG-I-P-SACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLKSI---VM-LGFLSKLEVLDLH 158 (263)
T ss_dssp EEECCSSC-CSCCTT-C-C-CSSCCEEECCSSCCSB--SGGGTTCTTCCEEECTTSCCCBC---GG-GGGCTTCCEEECT
T ss_pred EEECCCCc-cCCcCc-c-c-cCcccEEEccCCccCC--ChhhcCcccccEEECCCCcCCCC---hH-HccCCCCCEEECC
Confidence 99998877 665432 1 1 2578889999888864 34688888899999988887652 24 6678888999988
Q ss_pred cCCcccceeccCcccccccceeeccCcCcC
Q 039403 173 SMYWLDEWTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 173 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
+ +.++++ ..+..+++|+.|++++|++..
T Consensus 159 ~-N~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 159 G-NEITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp T-SCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred C-CcCcch-HHhccCCCCCEEeCCCCcccC
Confidence 8 677766 567788888999998888664
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-18 Score=145.97 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=18.2
Q ss_pred cccccceeeccCcCcCC----CccccccCcCccEEEccCCc
Q 039403 187 LPKLESLIVNPCAYLRK----LPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 187 ~~~L~~L~l~~~~~~~~----l~~~l~~l~~L~~l~l~~~~ 223 (249)
+++|++|++++|.+... ++..+..+++|+++++++|.
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 44555555555554331 33444445555555555553
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=116.36 Aligned_cols=141 Identities=20% Similarity=0.163 Sum_probs=71.7
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCcccccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
++.++++|..+. ++|++| +++| .+.+..+..+..+++|++|++.++. ..++. .+..+++|+.|++++|. ...
T Consensus 28 ~~~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~--l~~ 102 (229)
T 3e6j_A 28 SKRHASVPAGIP--TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ--LTV 102 (229)
T ss_dssp TSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCC
T ss_pred CCCcCccCCCCC--CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc--CCc
Confidence 455566665543 566666 5555 5555555555566666666644444 44433 23556666666666654 333
Q ss_pred chhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeecccc
Q 039403 80 GVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSY 150 (249)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 150 (249)
..+..+..+++|+.|+++++. ++.++..+.. +++|+.|++++|.++...+..+..+++|+.|++.+|.+
T Consensus 103 l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 103 LPSAVFDRLVHLKELFMCCNK-LTELPRGIER-LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CCSCCTTGGG-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred cChhHhCcchhhCeEeccCCc-ccccCccccc-CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 223334455555555555544 4444334444 45555555555555432223344455555555554443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=116.46 Aligned_cols=127 Identities=15% Similarity=0.145 Sum_probs=72.9
Q ss_pred ccccccccccCC-CCcch-hcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCcc
Q 039403 41 KNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLI 117 (249)
Q Consensus 41 ~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~ 117 (249)
+++++|++.++. ..++. .+..+++|+.|++++|. .....|..+..+++|+.|+++++. ++.++. .+.. +++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~-l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ--ISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEG-LFSLQ 107 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC--CCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTT-CTTCC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc--CCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccC-CCCCC
Confidence 455555533333 33332 44556666666666664 444345555666666666666655 555443 2455 66666
Q ss_pred EEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEecc
Q 039403 118 QLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKS 173 (249)
Q Consensus 118 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 173 (249)
.|++++|.+++..+..+..+++|+.|++++|.+.+.. +.. +..+++|++|++++
T Consensus 108 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGT-FSPLRAIQTMHLAQ 161 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTT-TTTCTTCCEEECCS
T ss_pred EEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHH-HhCCCCCCEEEeCC
Confidence 6666666666555566666667777777766665433 334 55566677777766
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=125.14 Aligned_cols=162 Identities=22% Similarity=0.160 Sum_probs=101.6
Q ss_pred CCcchhcCCCcccCeEEEecCccccccchhhhhc-CCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCC
Q 039403 53 SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLC-ELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDP 130 (249)
Q Consensus 53 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~ 130 (249)
..+|..+. +.++.|++++|. .....+..+. .+++|+.|+++++. +..+.. .+.. +++|++|++++|.++...
T Consensus 31 ~~iP~~~~--~~l~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~-l~~L~~L~Ls~N~l~~~~ 104 (361)
T 2xot_A 31 PNVPQSLP--SYTALLDLSHNN--LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVP-VPNLRYLDLSSNHLHTLD 104 (361)
T ss_dssp SSCCSSCC--TTCSEEECCSSC--CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTT-CTTCCEEECCSSCCCEEC
T ss_pred CccCccCC--CCCCEEECCCCC--CCccChhhhhhcccccCEEECCCCc-CCccChhhccC-CCCCCEEECCCCcCCcCC
Confidence 44554432 346677777774 4443344454 67777777777766 666654 4666 777777777777776444
Q ss_pred cccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccC----cccccccceeeccCcCcCCCcc
Q 039403 131 MPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGA----GALPKLESLIVNPCAYLRKLPE 206 (249)
Q Consensus 131 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~l~~ 206 (249)
+..+..+++|+.|++++|.+.... +.. +..+++|+.|++++ |.++.++... ..+++|+.|++++|.+...-+.
T Consensus 105 ~~~~~~l~~L~~L~L~~N~i~~~~-~~~-~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 105 EFLFSDLQALEVLLLYNNHIVVVD-RNA-FEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEEC-TTT-TTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred HHHhCCCcCCCEEECCCCcccEEC-HHH-hCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence 455677777777777777765432 344 66677777777777 5666666544 4577777888877776542223
Q ss_pred ccccCcC--ccEEEccCCc
Q 039403 207 ELWCIKS--LRKLDLHWPQ 223 (249)
Q Consensus 207 ~l~~l~~--L~~l~l~~~~ 223 (249)
.+..++. ++.+++++|+
T Consensus 182 ~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHHHSCHHHHTTEECCSSC
T ss_pred HhhhccHhhcceEEecCCC
Confidence 4555655 3677777764
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-15 Score=114.44 Aligned_cols=150 Identities=17% Similarity=0.094 Sum_probs=93.3
Q ss_pred ccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEE
Q 039403 43 LIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLS 120 (249)
Q Consensus 43 L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~ 120 (249)
-+.++..+.. ..+|..+. ++|+.|++++|. .....+..+..+++|+.|+++++. ++.+.. .+.. +++|+.|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~-l~~L~~L~ 94 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQ--ITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDS-LTQLTVLD 94 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT-CTTCCEEE
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCc--cCccCHHHhhCccCCcEEECCCCC-CCCcChhhccc-CCCcCEEE
Confidence 3445533333 55665443 778888888886 555556667777777777777766 665553 3455 66777777
Q ss_pred EEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCc
Q 039403 121 LSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCA 199 (249)
Q Consensus 121 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 199 (249)
+++|.++...+..+..+++|+.|++++|.+.. . +.. +..+++|++|++++ |.++.++. .+..+++|+.|++++|+
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-l-p~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-L-PRG-IERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-C-CTT-GGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCcccc-c-Ccc-cccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 77777664444445666777777777666652 2 444 55666677777766 55665553 34566667777777666
Q ss_pred CcC
Q 039403 200 YLR 202 (249)
Q Consensus 200 ~~~ 202 (249)
+..
T Consensus 171 ~~c 173 (229)
T 3e6j_A 171 WDC 173 (229)
T ss_dssp BCT
T ss_pred ccC
Confidence 554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.6e-15 Score=113.36 Aligned_cols=151 Identities=14% Similarity=0.147 Sum_probs=101.3
Q ss_pred cccccccCC-CCcchhcCCCcccCeEEEecCccccccchh-hhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEE
Q 039403 44 IFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVS-KSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLS 120 (249)
Q Consensus 44 ~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~ 120 (249)
+.+++.++. ..+|..+. ..++.|++++|. .....+ ..+..+++|+.|+++++. ++.+.. .+.. +++|+.|+
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~-l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNE--FTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEG-ASGVNEIL 87 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSC--CCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTT-CTTCCEEE
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCc--CCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCC-CCCCCEEE
Confidence 456634434 56665443 345788888885 443322 346777888888887776 776665 5666 77788888
Q ss_pred EEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCc
Q 039403 121 LSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCA 199 (249)
Q Consensus 121 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 199 (249)
+++|.+++..+..+..+++|++|++++|.+.+.. +.. +..+++|++|++++ |.++.+ |..+..+++|+.|++++|+
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG-NDS-FIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC-TTS-STTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC-HhH-cCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcC
Confidence 8888777555566777777888888777776543 445 66777777777777 566655 5566677777777777777
Q ss_pred CcCC
Q 039403 200 YLRK 203 (249)
Q Consensus 200 ~~~~ 203 (249)
+...
T Consensus 165 l~c~ 168 (220)
T 2v70_A 165 FNCN 168 (220)
T ss_dssp EECS
T ss_pred CcCC
Confidence 6543
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-15 Score=117.93 Aligned_cols=160 Identities=18% Similarity=0.111 Sum_probs=130.4
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
+++.+++++ .+..+++|+.| +.+| .+. .++ .++.+++|++|++.++. ..++. +.++++|+.|++++|. . .
T Consensus 27 ~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~--l-~ 98 (263)
T 1xeu_A 27 GKQSVTDLV-SQKELSGVQNFNGDNS-NIQ-SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR--L-K 98 (263)
T ss_dssp TCSCTTSEE-CHHHHTTCSEEECTTS-CCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC--C-S
T ss_pred cCCCccccc-chhhcCcCcEEECcCC-Ccc-cch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc--c-C
Confidence 567888888 78999999999 8888 665 455 68899999999966666 66666 8999999999999995 3 3
Q ss_pred chhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeC
Q 039403 80 GVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAG 159 (249)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 159 (249)
.++. +.. ++|+.|+++++. +..+. .+.. +++|+.|++++|.+++ . ..+..+++|+.|++++|.+.+. ..
T Consensus 99 ~l~~-~~~-~~L~~L~L~~N~-l~~~~-~l~~-l~~L~~L~Ls~N~i~~-~-~~l~~l~~L~~L~L~~N~i~~~---~~- 167 (263)
T 1xeu_A 99 NLNG-IPS-ACLSRLFLDNNE-LRDTD-SLIH-LKNLEILSIRNNKLKS-I-VMLGFLSKLEVLDLHGNEITNT---GG- 167 (263)
T ss_dssp CCTT-CCC-SSCCEEECCSSC-CSBSG-GGTT-CTTCCEEECTTSCCCB-C-GGGGGCTTCCEEECTTSCCCBC---TT-
T ss_pred CcCc-ccc-CcccEEEccCCc-cCCCh-hhcC-cccccEEECCCCcCCC-C-hHHccCCCCCEEECCCCcCcch---HH-
Confidence 3443 333 899999999987 77765 6778 9999999999999974 3 4788999999999999998764 45
Q ss_pred CCCCCcccEEEeccCCccccee
Q 039403 160 SGGFPELKVLHLKSMYWLDEWT 181 (249)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~~ 181 (249)
+..+++|+.|++++ +.+...+
T Consensus 168 l~~l~~L~~L~l~~-N~~~~~~ 188 (263)
T 1xeu_A 168 LTRLKKVNWIDLTG-QKCVNEP 188 (263)
T ss_dssp STTCCCCCEEEEEE-EEEECCC
T ss_pred hccCCCCCEEeCCC-CcccCCc
Confidence 78899999999999 5555333
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=112.16 Aligned_cols=141 Identities=20% Similarity=0.214 Sum_probs=94.8
Q ss_pred CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCc
Q 039403 53 SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPM 131 (249)
Q Consensus 53 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~ 131 (249)
..+|..+. ++|+.|++++|. .....+..+..+++|+.|+++++. +..+.. .+.. +++|++|++++|.++...+
T Consensus 24 ~~iP~~l~--~~l~~L~l~~n~--i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~-l~~L~~L~Ls~N~l~~l~~ 97 (220)
T 2v9t_B 24 TEIPTNLP--ETITEIRLEQNT--IKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQG-LRSLNSLVLYGNKITELPK 97 (220)
T ss_dssp SSCCSSCC--TTCCEEECCSSC--CCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTT-CSSCCEEECCSSCCCCCCT
T ss_pred CcCCCccC--cCCCEEECCCCc--CCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhC-CcCCCEEECCCCcCCccCH
Confidence 55665543 578888888885 544444567777888888887776 666643 5666 7777778887777764333
Q ss_pred ccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcC
Q 039403 132 PMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 132 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 202 (249)
..+..+++|+.|++++|.+.+.. +.. +..+++|++|++++ |.++.++. .+..+++|+.|++++|++..
T Consensus 98 ~~f~~l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNANKINCLR-VDA-FQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCC-TTT-TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred hHccCCCCCCEEECCCCCCCEeC-HHH-cCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 44567777777777777766543 444 66677777777777 56665554 35567777777777777543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-16 Score=136.93 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=31.5
Q ss_pred CCcccEEEeccCCccc--ceeccCcccccccceeeccCcCcCC-CccccccCcCccEEEccCCc
Q 039403 163 FPELKVLHLKSMYWLD--EWTMGAGALPKLESLIVNPCAYLRK-LPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 163 ~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~-l~~~l~~l~~L~~l~l~~~~ 223 (249)
+++|++|++++ +.++ .++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.
T Consensus 462 ~~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 462 SPNVRWMLLGY-VGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CTTCCEEEECS-CCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CccceEeeccC-CCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 45555555555 2333 2333344556666666666664332 33333456666666666664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4e-17 Score=142.31 Aligned_cols=121 Identities=20% Similarity=0.164 Sum_probs=101.4
Q ss_pred CCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEE
Q 039403 90 KLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVL 169 (249)
Q Consensus 90 ~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 169 (249)
.|+.|+++++. ++.++ .+.. +++|+.|++++|.++ ..|..++.+++|+.|++++|.+++ . + . ++.+++|+.|
T Consensus 442 ~L~~L~Ls~n~-l~~lp-~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-l-p-~-l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKD-LTVLC-HLEQ-LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-V-D-G-VANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSC-CSSCC-CGGG-GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C-G-G-GTTCSSCCEE
T ss_pred CceEEEecCCC-CCCCc-Cccc-cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-C-c-c-cCCCCCCcEE
Confidence 58889999887 87776 4777 899999999999998 788899999999999999999886 3 4 6 8899999999
Q ss_pred EeccCCcccce--eccCcccccccceeeccCcCcCCCcc---ccccCcCccEEEc
Q 039403 170 HLKSMYWLDEW--TMGAGALPKLESLIVNPCAYLRKLPE---ELWCIKSLRKLDL 219 (249)
Q Consensus 170 ~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~l~~---~l~~l~~L~~l~l 219 (249)
++++ |.++.+ |..++.+++|+.|++++|++.+..+. .+..+++|+.|++
T Consensus 514 ~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 514 LLCN-NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECCS-SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ECCC-CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999 788876 88899999999999999998764332 2334789998864
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.7e-15 Score=112.98 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=53.5
Q ss_pred cCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCC
Q 039403 59 LGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERL 137 (249)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 137 (249)
+..+++|+.|++++|. .....+..+..+++|+.|+++++. ++.+.. .+.. +++|+.|++++|.+++..+..+..+
T Consensus 53 ~~~l~~L~~L~L~~N~--i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l 128 (220)
T 2v70_A 53 FKKLPQLRKINFSNNK--ITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKG-LESLKTLMLRSNRITCVGNDSFIGL 128 (220)
T ss_dssp GGGCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTT-CSSCCEEECTTSCCCCBCTTSSTTC
T ss_pred hccCCCCCEEECCCCc--CCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcC-CcCCCEEECCCCcCCeECHhHcCCC
Confidence 3445555555555553 333223344455555555555544 444333 2444 5555555555555554344455555
Q ss_pred CCCceEEeeccccCCceeeeeCCCCCCcccEEEecc
Q 039403 138 PRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKS 173 (249)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 173 (249)
++|+.|++++|.+.+.. +.. +..+++|+.|++++
T Consensus 129 ~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 129 SSVRLLSLYDNQITTVA-PGA-FDTLHSLSTLNLLA 162 (220)
T ss_dssp TTCSEEECTTSCCCCBC-TTT-TTTCTTCCEEECCS
T ss_pred ccCCEEECCCCcCCEEC-HHH-hcCCCCCCEEEecC
Confidence 55555555555554432 333 44555555555555
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=106.66 Aligned_cols=133 Identities=22% Similarity=0.166 Sum_probs=85.1
Q ss_pred CCcccCeEEEecCccccc-cchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCC
Q 039403 61 RLPSVQTLRISGNLSCYH-SGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPR 139 (249)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 139 (249)
..++|+.|++++|. .. +.+|..+..+++|+.|+++++. +..+ ..+.. +++|++|++++|.+++..+..+..+++
T Consensus 22 ~~~~L~~L~l~~n~--l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 22 TPAAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPK-LPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp CTTSCSEEECCSCB--CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCC-CSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred CcccCCEEECCCCC--CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhcc-CCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 34678888888875 44 3566666677777777777765 5555 35566 777777777777776545555555777
Q ss_pred CceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec----cCcccccccceeeccCcC
Q 039403 140 LQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM----GAGALPKLESLIVNPCAY 200 (249)
Q Consensus 140 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~ 200 (249)
|++|++++|.+.+...+.. +..+++|++|++++ +.++.++. .+..+++|+.|++++|..
T Consensus 97 L~~L~Ls~N~l~~~~~~~~-l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CCEEECBSSSCCSSGGGGG-GSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCEEeccCCccCcchhHHH-HhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 7777777776655221134 55666677777766 45555544 455666666666666663
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.9e-16 Score=135.78 Aligned_cols=108 Identities=14% Similarity=0.065 Sum_probs=55.8
Q ss_pred CCCccEEEEEccc--CCCCCcccc-cCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc--ceeccCccc
Q 039403 113 PPSLIQLSLSNTE--LMEDPMPML-ERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD--EWTMGAGAL 187 (249)
Q Consensus 113 ~~~L~~L~l~~~~--~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~ 187 (249)
+++|+.|+++.|. +++..+..+ ..+++|+.|++++|.+++...+.. +..+++|++|++++|. ++ .++.....+
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l 512 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF-SRGCPNLQKLEMRGCC-FSERAIAAAVTKL 512 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH-HTCCTTCCEEEEESCC-CBHHHHHHHHHHC
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH-HhcCcccCeeeccCCC-CcHHHHHHHHHhc
Confidence 4555566655432 332222222 235666666666666554332333 4566777777777744 44 234444456
Q ss_pred ccccceeeccCcCcCC-CccccccCcCccEEEccCC
Q 039403 188 PKLESLIVNPCAYLRK-LPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 188 ~~L~~L~l~~~~~~~~-l~~~l~~l~~L~~l~l~~~ 222 (249)
++|+.|++++|+++.. +......++.+....+..+
T Consensus 513 ~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 513 PSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp SSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 6777777777775542 2112224555554444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7e-17 Score=140.81 Aligned_cols=179 Identities=18% Similarity=0.136 Sum_probs=133.0
Q ss_pred CCCccccccccccCC-CCcchhcCCCcccCeEEEecCcc-----------ccccchhhhhcCCCCCcEEE-EecCC--Cc
Q 039403 38 SSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLS-----------CYHSGVSKSLCELHKLECLK-LVNES--KL 102 (249)
Q Consensus 38 ~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~-----------~~~~~~~~~l~~l~~L~~L~-l~~~~--~L 102 (249)
..+++|+.|++.++. ..+|..++++++|+.|+++++.. ...+..|..+..+++|+.|+ ++.+. .+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 567788888855544 77888888888888888765520 02334566677777777776 33321 01
Q ss_pred eeeee---cCCCC-CCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc
Q 039403 103 SRMVL---SEYQF-PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD 178 (249)
Q Consensus 103 ~~l~l---~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 178 (249)
..+.+ .+..+ ...|+.|++++|.+++ .|. ++.+++|+.|++++|.+. .. |.. ++.+++|+.|++++ |.++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~l-p~~-~~~l~~L~~L~Ls~-N~l~ 499 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-AL-PPA-LAALRCLEVLQASD-NALE 499 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CC-CGG-GGGCTTCCEEECCS-SCCC
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-cc-chh-hhcCCCCCEEECCC-CCCC
Confidence 11111 11110 2368899999999984 555 899999999999999987 33 667 88999999999999 7888
Q ss_pred ceeccCcccccccceeeccCcCcCCC-ccccccCcCccEEEccCCc
Q 039403 179 EWTMGAGALPKLESLIVNPCAYLRKL-PEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 179 ~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~l~l~~~~ 223 (249)
.+| .++.+++|+.|++++|.+.+.. |..++.+++|+.|++++|+
T Consensus 500 ~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 500 NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 888 7889999999999999987654 8899999999999999996
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-14 Score=119.55 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=75.5
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCC-CCccccccccccCC-CCcc-hhcCCCcccCeEEEecCcccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFS-SLKNLIFISALHPS-SCTP-DILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~ 77 (249)
+++.++++|..+. ++++.| +++| .+.+..+..+. .+++|++|++.++. ..++ ..+.++++|+.|++++|. .
T Consensus 26 ~~~~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~--l 100 (361)
T 2xot_A 26 SKQQLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH--L 100 (361)
T ss_dssp CSSCCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--C
T ss_pred CCCCcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc--C
Confidence 3555666665543 345666 5555 55543444444 56666666644444 3333 345566666666666664 3
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccc---cCCCCCceEEeeccccC
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPML---ERLPRLQVLKLKRNSYL 151 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~ 151 (249)
....+..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|.++......+ ..+++|+.|++++|.+.
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFED-MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTT-CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCC-cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 33333445566666666666655 555433 4555 5666666666666553222222 34556666666666554
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.8e-14 Score=103.80 Aligned_cols=131 Identities=23% Similarity=0.165 Sum_probs=109.0
Q ss_pred cCCCCCcEEEEecCCCce--eeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCC
Q 039403 86 CELHKLECLKLVNESKLS--RMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGF 163 (249)
Q Consensus 86 ~~l~~L~~L~l~~~~~L~--~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 163 (249)
...++|+.|+++++. +. .++..+.. +++|+.|++++|.+++. ..+..+++|++|++++|.+.+.. +.. +..+
T Consensus 21 ~~~~~L~~L~l~~n~-l~~~~i~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l 94 (168)
T 2ell_A 21 RTPAAVRELVLDNCK-SNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGL-DML-AEKL 94 (168)
T ss_dssp SCTTSCSEEECCSCB-CBTTBCSSCCGG-GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCC-CHH-HHHC
T ss_pred CCcccCCEEECCCCC-CChhhHHHHHHh-CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHH-HHH-HhhC
Confidence 345889999999977 76 55546677 89999999999998753 78889999999999999987753 555 5668
Q ss_pred CcccEEEeccCCccccee--ccCcccccccceeeccCcCcCCCc---cccccCcCccEEEccCCc
Q 039403 164 PELKVLHLKSMYWLDEWT--MGAGALPKLESLIVNPCAYLRKLP---EELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~l~---~~l~~l~~L~~l~l~~~~ 223 (249)
++|++|++++ +.++.++ ..+..+++|+.|++++|++.+..+ ..+..+++|+++++++|.
T Consensus 95 ~~L~~L~Ls~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 95 PNLTHLNLSG-NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCCEEECBS-SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCEEeccC-CccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 9999999999 6788766 677899999999999999775333 378899999999999996
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-14 Score=103.29 Aligned_cols=103 Identities=23% Similarity=0.183 Sum_probs=55.9
Q ss_pred CCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccccee--ccCcccccc
Q 039403 113 PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWT--MGAGALPKL 190 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L 190 (249)
+++|+.|++++|.+++. ..++.+++|++|++++|.+.+.. +.. +..+++|++|++++ +.+++++ ..+..+++|
T Consensus 41 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~-~~~-~~~l~~L~~L~ls~-N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGL-EVL-AEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCT-HHH-HHHCTTCCEEECTT-SCCCSHHHHGGGGGCTTC
T ss_pred cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchH-HHH-hhhCCCCCEEECCC-CcCCChHHHHHHhhCCCC
Confidence 44444444444444322 44455555555555555554432 333 33455666666666 4455433 455666677
Q ss_pred cceeeccCcCcCCCc---cccccCcCccEEEcc
Q 039403 191 ESLIVNPCAYLRKLP---EELWCIKSLRKLDLH 220 (249)
Q Consensus 191 ~~L~l~~~~~~~~l~---~~l~~l~~L~~l~l~ 220 (249)
++|++++|++.+..+ ..+..+++|++++++
T Consensus 116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777777776554322 246667777777665
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-14 Score=101.45 Aligned_cols=129 Identities=20% Similarity=0.155 Sum_probs=97.5
Q ss_pred CCcccCeEEEecCccccc-cchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCC
Q 039403 61 RLPSVQTLRISGNLSCYH-SGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPR 139 (249)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 139 (249)
..++|+.|++++|. .. +.+|..+..+++|+.|+++++. +..+ ..+.. +++|+.|++++|.+++..+..+..+++
T Consensus 15 ~~~~l~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 15 TPSDVKELVLDNSR--SNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPK-LNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp CGGGCSEEECTTCB--CBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCC-CTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CCccCeEEEccCCc--CChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhc-CCCCCEEECCCCcccchHHHHhhhCCC
Confidence 35778888888886 54 4667777888888888888876 6666 36677 888888888888887556666777888
Q ss_pred CceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec----cCcccccccceeec
Q 039403 140 LQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM----GAGALPKLESLIVN 196 (249)
Q Consensus 140 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~ 196 (249)
|++|++++|.+.+...+.. ++.+++|++|++++ +.++.++. .+..+++|+.|+++
T Consensus 90 L~~L~ls~N~i~~~~~~~~-~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTSCCCSHHHHGG-GGGCTTCCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCCcCCChHHHHH-HhhCCCCCEEeCcC-CcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888888776321345 67788888888888 56776654 56678888888775
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-14 Score=130.52 Aligned_cols=113 Identities=13% Similarity=0.027 Sum_probs=51.2
Q ss_pred CCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCC
Q 039403 34 KNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQF 112 (249)
Q Consensus 34 ~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~ 112 (249)
+..+..+++|+.|++.++. ..+|..+.++++|++|+|++|. +. .+|..+..+++|+.|+++++. +..++..+..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~--l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~- 291 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS--LT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGS- 291 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC--CS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGG-
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc--Cc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcC-
Confidence 3344445555555533333 4444444445555555555553 22 444444555555555555544 4444334444
Q ss_pred CCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCC
Q 039403 113 PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLG 152 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 152 (249)
+++|++|++++|.++ .+|..++.+++|+.|++++|.+.+
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 445555555555443 344444455555555555544443
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=98.31 Aligned_cols=128 Identities=20% Similarity=0.150 Sum_probs=75.6
Q ss_pred CeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceE
Q 039403 66 QTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVL 143 (249)
Q Consensus 66 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 143 (249)
+.++++++. .+.+|..+. .+++.|+++++. +..+.. .+.. +++|++|++++|.+++..+..+..+++|+.|
T Consensus 11 ~~l~~s~~~---l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRG---LKEIPRDIP--LHTTELLLNDNE-LGRISSDGLFGR-LPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSC---CSSCCSCCC--TTCSEEECCSCC-CCSBCCSCSGGG-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCC---cCcCccCCC--CCCCEEECCCCc-CCccCCcccccc-CCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 566666663 244444332 266677776665 555543 2555 6667777777776665445666666667777
Q ss_pred EeeccccCCceeeeeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCC
Q 039403 144 KLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRK 203 (249)
Q Consensus 144 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~ 203 (249)
++++|.+.+.. +.. +..+++|++|++++ |.++.+ |..+..+++|++|++++|++.+.
T Consensus 84 ~Ls~N~l~~~~-~~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 84 QLGENKIKEIS-NKM-FLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp ECCSCCCCEEC-SSS-STTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ECCCCcCCccC-HHH-hcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 76666665433 334 55566666666666 455533 44555666666666666665543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-13 Score=100.41 Aligned_cols=130 Identities=16% Similarity=0.107 Sum_probs=88.0
Q ss_pred CCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcc
Q 039403 87 ELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPEL 166 (249)
Q Consensus 87 ~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 166 (249)
++++|+.|+++++. ++.++ .+....++|+.|++++|.+++ . ..+..+++|++|++++|.+.+.. +.. +..+++|
T Consensus 17 ~~~~L~~L~l~~n~-l~~i~-~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPVIE-NLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIG-EGL-DQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTSC-CCSCC-CGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEEC-SCH-HHHCTTC
T ss_pred CcCCceEEEeeCCC-CchhH-HhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccC-cch-hhcCCCC
Confidence 34445555554443 44332 222203367777777777763 2 56677788888888888776421 222 3567888
Q ss_pred cEEEeccCCcccceec--cCcccccccceeeccCcCcCCCccc----cccCcCccEEEccCCcH
Q 039403 167 KVLHLKSMYWLDEWTM--GAGALPKLESLIVNPCAYLRKLPEE----LWCIKSLRKLDLHWPQT 224 (249)
Q Consensus 167 ~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~l~~~----l~~l~~L~~l~l~~~~~ 224 (249)
++|++++ |.++.++. .+..+++|+.|++++|++. .+|.. +..+++|+.+++++|..
T Consensus 91 ~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTN-NSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCC-CcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 8888888 67777776 6778889999999999876 45653 78899999999999973
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=97.78 Aligned_cols=126 Identities=17% Similarity=0.110 Sum_probs=89.2
Q ss_pred cccccccCC-CCcchhcCCCcccCeEEEecCccccccchhh-hhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEE
Q 039403 44 IFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSK-SLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLS 120 (249)
Q Consensus 44 ~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~ 120 (249)
+++++.+.. ..+|..+.. +|+.|++++|. .....+. .+..+++|+.|+++++. ++.+.. .+.. +++|+.|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~-l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEG-ASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTT-CTTCCEEE
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc--CCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCC-cccCCEEE
Confidence 556644444 667765543 78888888885 4333332 37788888888888877 776644 6677 88888888
Q ss_pred EEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc
Q 039403 121 LSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD 178 (249)
Q Consensus 121 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 178 (249)
+++|.+++..+..+..+++|++|++++|.+.+.. +.. +..+++|++|++++ |.+.
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~L~~-N~l~ 139 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM-PGS-FEHLNSLTSLNLAS-NPFN 139 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC-TTS-STTCTTCCEEECTT-CCBC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC-HHH-hhcCCCCCEEEeCC-CCcc
Confidence 8888887655566778888888888888877643 455 77788888888888 4443
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=9.7e-15 Score=128.03 Aligned_cols=178 Identities=15% Similarity=0.137 Sum_probs=102.1
Q ss_pred CCccccccccccCC-C--CcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecC---------C------
Q 039403 39 SLKNLIFISALHPS-S--CTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNE---------S------ 100 (249)
Q Consensus 39 ~l~~L~~L~l~~~~-~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~---------~------ 100 (249)
.+++|++|++.++. . .+...+.++++|+.|++++|. ....++.....+++|+.|++.+. .
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 46677777755554 1 233334567777777777663 22333333445677777777320 0
Q ss_pred --------Cceeeee-----------cC-CCCCCCccEEEEE--c----ccCCCC-----CcccccCCCCCceEEeeccc
Q 039403 101 --------KLSRMVL-----------SE-YQFPPSLIQLSLS--N----TELMED-----PMPMLERLPRLQVLKLKRNS 149 (249)
Q Consensus 101 --------~L~~l~l-----------~~-~~~~~~L~~L~l~--~----~~~~~~-----~~~~~~~l~~L~~L~l~~~~ 149 (249)
.|+.+.+ .+ .. +++|+.|+++ + +.++.. .+..+..+++|+.|++.+ .
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~-~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARN-RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHH-CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhh-CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-c
Confidence 0222221 11 23 5667777776 2 233311 111245566777777754 3
Q ss_pred cCCceeeeeCCC-CCCcccEEEeccCCccc--ceeccCcccccccceeeccCcCcCC-CccccccCcCccEEEccCCc
Q 039403 150 YLGRKLACAGSG-GFPELKVLHLKSMYWLD--EWTMGAGALPKLESLIVNPCAYLRK-LPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 150 ~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~-l~~~l~~l~~L~~l~l~~~~ 223 (249)
+++.. ... +. .+++|+.|++++| .++ .+......+++|+.|++++|++++. +...+..+++|++|++++|+
T Consensus 443 l~~~~-~~~-l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 443 LTDKV-FEY-IGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CCHHH-HHH-HHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred ccHHH-HHH-HHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 43332 112 22 3788999999884 454 2333235689999999999997543 22345568999999999997
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.8e-14 Score=126.43 Aligned_cols=144 Identities=12% Similarity=0.024 Sum_probs=109.0
Q ss_pred CCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccch
Q 039403 4 SYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGV 81 (249)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (249)
+.+...|..+..+++|+.| +++| .+. .+|..++.+++|++|++.++. ..+|..++++++|+.|+|++|. +. .+
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n-~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~--l~-~l 285 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNL-QIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR--LT-SL 285 (727)
T ss_dssp -----------CCCCCCEEECTTS-CCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC--CS-SC
T ss_pred cceecChhhhccCCCCcEEECCCC-CCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc--CC-cc
Confidence 4455667889999999999 8888 776 788888899999999966666 8899999999999999999996 54 77
Q ss_pred hhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCC-CceEEeeccccCCce
Q 039403 82 SKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPR-LQVLKLKRNSYLGRK 154 (249)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~ 154 (249)
|..+..+++|+.|+++++. +..++..+.. +++|+.|++++|.+++..+..+..+.. ...+++.+|.+.+..
T Consensus 286 p~~~~~l~~L~~L~L~~N~-l~~lp~~~~~-l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNM-VTTLPWEFGN-LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp CSSGGGGTTCSEEECCSSC-CCCCCSSTTS-CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred ChhhcCCCCCCEEECCCCC-CCccChhhhc-CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 8899999999999999988 8888778888 999999999999998666665543321 123556666665533
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-14 Score=124.67 Aligned_cols=210 Identities=13% Similarity=0.082 Sum_probs=124.0
Q ss_pred cccchhhhhcccccee-eecCcccCCC-CCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEE------------
Q 039403 7 DQSPEDIWMMQKLMHL-NFGCITLPAP-PKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRI------------ 70 (249)
Q Consensus 7 ~~lp~~i~~l~~L~~L-l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l------------ 70 (249)
..+|..+..+++|++| +++| .+... +...+..+++|++|++.++- ..++.....+++|+.|++
T Consensus 279 ~~l~~~~~~~~~L~~L~L~~~-~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~ 357 (594)
T 2p1m_B 279 AYLPAVYSVCSRLTTLNLSYA-TVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357 (594)
T ss_dssp GGGGGGHHHHTTCCEEECTTC-CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSS
T ss_pred hhHHHHHHhhCCCCEEEccCC-CCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCC
Confidence 3456566677888888 7777 44322 12224456667766644432 112222223555555555
Q ss_pred ----------------------ecCccccccchhhhhc-CCCCCcEEEEe--c---CCCceeeee------cCCCCCCCc
Q 039403 71 ----------------------SGNLSCYHSGVSKSLC-ELHKLECLKLV--N---ESKLSRMVL------SEYQFPPSL 116 (249)
Q Consensus 71 ----------------------~~~~~~~~~~~~~~l~-~l~~L~~L~l~--~---~~~L~~l~l------~~~~~~~~L 116 (249)
+.+. .....+..+. .+++|+.|+++ + ...+...+. .+.. +++|
T Consensus 358 ~l~~~~l~~l~~~~~~L~~L~~~~~~--l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~L 434 (594)
T 2p1m_B 358 ALTEQGLVSVSMGCPKLESVLYFCRQ--MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH-CKDL 434 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESC--CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH-CTTC
T ss_pred CCCHHHHHHHHHhchhHHHHHHhcCC--cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh-CCCc
Confidence 3332 2222222232 46777777776 2 111332211 1455 7899
Q ss_pred cEEEEEcccCCCCCcccccC-CCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc--ceeccCcccccccce
Q 039403 117 IQLSLSNTELMEDPMPMLER-LPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD--EWTMGAGALPKLESL 193 (249)
Q Consensus 117 ~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L 193 (249)
+.|++++ .+++..+..+.. +++|+.|++++|.+++...... ...+++|+.|++++|. ++ .+......+++|+.|
T Consensus 435 ~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l-~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L 511 (594)
T 2p1m_B 435 RRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV-LSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSL 511 (594)
T ss_dssp CEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH-HHHCTTCCEEEEESCS-CCHHHHHHTGGGGGGSSEE
T ss_pred cEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH-HhcCCCcCEEECcCCC-CcHHHHHHHHHhCCCCCEE
Confidence 9999977 555445555555 8999999999998866542222 3568999999999964 45 233345578999999
Q ss_pred eeccCcCcCCCcccc-ccCcCccEEEccCCc
Q 039403 194 IVNPCAYLRKLPEEL-WCIKSLRKLDLHWPQ 223 (249)
Q Consensus 194 ~l~~~~~~~~l~~~l-~~l~~L~~l~l~~~~ 223 (249)
++++|+++..-...+ ..++.++...+..+.
T Consensus 512 ~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 512 WMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp EEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred eeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 999999743222223 456777666665553
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.2e-15 Score=112.59 Aligned_cols=129 Identities=21% Similarity=0.235 Sum_probs=82.9
Q ss_pred hhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCC
Q 039403 81 VSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGS 160 (249)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 160 (249)
+|..+..+++|+.|+++++. +..++ .+.. +++|+.|++++|.++ ..+..+..+++|+.|++++|.+.+- + . +
T Consensus 40 l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~-l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l--~-~-~ 111 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNN-IEKIS-SLSG-MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--S-G-I 111 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEE-ESCCC-CHHH-HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH--H-H-H
T ss_pred hhHHHhcCCCCCEEECCCCC-Ccccc-cccc-CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC--C-c-c
Confidence 33466666666666666655 55544 5555 667777777777766 4555555566777777777776551 2 3 5
Q ss_pred CCCCcccEEEeccCCcccceec--cCcccccccceeeccCcCcCCCcc----------ccccCcCccEEE
Q 039403 161 GGFPELKVLHLKSMYWLDEWTM--GAGALPKLESLIVNPCAYLRKLPE----------ELWCIKSLRKLD 218 (249)
Q Consensus 161 ~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~l~~----------~l~~l~~L~~l~ 218 (249)
..+++|++|++++ +.++.++. .+..+++|++|++++|++.+..|. .+..+++|+.+|
T Consensus 112 ~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 5667777777777 56665443 456677788888877776554332 256778888776
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.33 E-value=7.9e-13 Score=98.06 Aligned_cols=133 Identities=13% Similarity=0.081 Sum_probs=94.7
Q ss_pred cCCCcccCeEEEecCccccccchhhhhcCC-CCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCC
Q 039403 59 LGRLPSVQTLRISGNLSCYHSGVSKSLCEL-HKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERL 137 (249)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 137 (249)
+.++.+|+.|++++|. .. .++. +..+ ++|+.|+++++. ++.+ ..+.. +++|+.|++++|.+++..+..+..+
T Consensus 15 ~~~~~~L~~L~l~~n~--l~-~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~-l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK--IP-VIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPL-LRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp EECTTSCEEEECTTSC--CC-SCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCC-CSSCCEEECCSSCCCEECSCHHHHC
T ss_pred cCCcCCceEEEeeCCC--Cc-hhHH-hhhcCCCCCEEECCCCC-CCcc-ccccc-CCCCCEEECCCCcccccCcchhhcC
Confidence 3456777788887775 33 3333 3333 478888888876 7766 36777 8888889998888874322334788
Q ss_pred CCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceecc----CcccccccceeeccCcC
Q 039403 138 PRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMG----AGALPKLESLIVNPCAY 200 (249)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~ 200 (249)
++|++|++++|.+........ +..+++|+.|++++ |.++.++.. +..+++|+.|++++|..
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~-l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDP-LASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGG-GGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCEEECCCCcCCcchhhHh-hhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 899999999888754221125 66788999999998 677777664 67889999999998874
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.5e-12 Score=93.65 Aligned_cols=107 Identities=17% Similarity=0.143 Sum_probs=52.2
Q ss_pred CCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccE
Q 039403 89 HKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKV 168 (249)
Q Consensus 89 ~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 168 (249)
++++.|+++++. ++.++-.+.. +++|+.|++++|.++...+..+..+++|+.|++++|.+.+.. +.. +..+++|++
T Consensus 31 ~~l~~L~L~~n~-i~~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~-f~~l~~L~~ 106 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FTLVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRT-FDGLKSLRL 106 (193)
T ss_dssp TTCCEEECCSSC-CCSCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTT-TTTCTTCCE
T ss_pred CCCCEEECCCCc-CchhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHH-hCCCCCCCE
Confidence 345555555544 4444334444 555555555555555433344555555555555555544322 223 444555555
Q ss_pred EEeccCCcccceecc-CcccccccceeeccCcC
Q 039403 169 LHLKSMYWLDEWTMG-AGALPKLESLIVNPCAY 200 (249)
Q Consensus 169 L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 200 (249)
|++++ |.++.++.. +..+++|+.|++++|++
T Consensus 107 L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 107 LSLHG-NDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp EECCS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55555 444444432 33455555555555554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=91.51 Aligned_cols=104 Identities=23% Similarity=0.291 Sum_probs=47.7
Q ss_pred CccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceecc-Ccccccccce
Q 039403 115 SLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMG-AGALPKLESL 193 (249)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L 193 (249)
+++.|++++|.+++..+..+..+++|++|++++|.+.+.. +.. +..+++|++|++++ +.++.++.. +..+++|+.|
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~-~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGV-FDKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTT-TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhH-ccCCCccCEEECCC-CCccccCHHHhhCCcccCEE
Confidence 4455555555444322233444555555555555443321 222 34455555555555 344444332 3445555555
Q ss_pred eeccCcCcCCCcc-ccccCcCccEEEccCC
Q 039403 194 IVNPCAYLRKLPE-ELWCIKSLRKLDLHWP 222 (249)
Q Consensus 194 ~l~~~~~~~~l~~-~l~~l~~L~~l~l~~~ 222 (249)
++++|.+.+ +|. .+..+++|+++++++|
T Consensus 106 ~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 106 ALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp ECCSSCCSC-CCTTTTTTCTTCCEEECCSS
T ss_pred ECcCCcceE-eCHHHhcCCcccCEEEecCC
Confidence 555555432 222 2344555555555555
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=9e-12 Score=93.77 Aligned_cols=122 Identities=22% Similarity=0.242 Sum_probs=87.8
Q ss_pred cccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEE
Q 039403 44 IFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSL 121 (249)
Q Consensus 44 ~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l 121 (249)
+.++..+.. ..+|..+. ++|+.|++++|. . ..+|..+..+++|+.|+++++. ++.+.. .+.. +++|+.|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~--i-~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~-l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ--F-TLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSN-MTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSC--C-CSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTT-CTTCCEEEC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCc--C-chhHHHhhcccCCCEEECCCCc-CCEeCHhHccC-CCCCCEEEC
Confidence 345533333 56665443 578888888884 3 3566778888888888888877 776664 5677 888888888
Q ss_pred EcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccC
Q 039403 122 SNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSM 174 (249)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 174 (249)
++|.++...+..+..+++|+.|++++|.+.... +.. +..+++|+.|+++++
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP-EGA-FNDLSALSHLAIGAN 136 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC-TTT-TTTCTTCCEEECCSS
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC-hhh-hhcCccccEEEeCCC
Confidence 888887666667888888888888888876432 334 667788888888883
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=91.04 Aligned_cols=108 Identities=21% Similarity=0.233 Sum_probs=64.3
Q ss_pred ccccccccccCC-CCcch-hcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCcc
Q 039403 41 KNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLI 117 (249)
Q Consensus 41 ~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~ 117 (249)
++|++|++.++. ..++. .+..+++|++|++++|. .....+..+..+++|+.|+++++. +..+.. .+.. +++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~-l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ--IQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDK-LTQLK 103 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT-CTTCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc--ceEeChhHccCCCccCEEECCCCC-ccccCHHHhhC-CcccC
Confidence 456666644433 33333 34556666666666664 333333345566666666666655 555443 3455 67777
Q ss_pred EEEEEcccCCCCCcccccCCCCCceEEeeccccCC
Q 039403 118 QLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLG 152 (249)
Q Consensus 118 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 152 (249)
.|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 77777777764333445677788888888777654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-13 Score=104.71 Aligned_cols=156 Identities=17% Similarity=0.116 Sum_probs=108.2
Q ss_pred ccccchhhhhcccccee-eecCcccCCCCCC------cCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccc
Q 039403 6 IDQSPEDIWMMQKLMHL-NFGCITLPAPPKN------YFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 6 l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~------~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
+.+..+.+...+.++.+ +..+ .+.+.+|. .++.+++|++|++.++. ..+| .+.++++|+.|++++|. .
T Consensus 7 ~~~~~~~~~~~~~l~~l~l~~~-~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~--l 82 (198)
T 1ds9_A 7 IKDAIRIFEERKSVVATEAEKV-ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL--I 82 (198)
T ss_dssp HHHHHHHHHHTTCCCCTTCSEE-ECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE--E
T ss_pred HHHHHHHHHhcccccCcchhee-EeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC--c
Confidence 34444556666777777 6666 66666665 67778888888865555 5566 67778888888888884 3
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCC-cccccCCCCCceEEeeccccCCcee-
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDP-MPMLERLPRLQVLKLKRNSYLGRKL- 155 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~- 155 (249)
..+|..+..+++|+.|+++++. +..++ .+.. +++|+.|++++|.+++.. +..+..+++|++|++.+|.+.+...
T Consensus 83 -~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~-l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 83 -KKIENLDAVADTLEELWISYNQ-IASLS-GIEK-LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp -CSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHH-HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred -ccccchhhcCCcCCEEECcCCc-CCcCC-cccc-CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 3566666677888888888866 66654 5666 778888888888887322 2467888889999998887754320
Q ss_pred --------eeeCCCCCCcccEEE
Q 039403 156 --------ACAGSGGFPELKVLH 170 (249)
Q Consensus 156 --------~~~~~~~~~~L~~L~ 170 (249)
... +..+++|+.|+
T Consensus 159 ~~~~~~~~~~~-~~~l~~L~~Ld 180 (198)
T 1ds9_A 159 NNATSEYRIEV-VKRLPNLKKLD 180 (198)
T ss_dssp TTTHHHHHHHH-HHHCSSCSEEC
T ss_pred ccchHHHHHHH-HHhCCCcEEEC
Confidence 112 34677888886
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=94.59 Aligned_cols=101 Identities=15% Similarity=0.007 Sum_probs=58.6
Q ss_pred CCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCccc-EEEeccCCccccee-ccCcccccc
Q 039403 113 PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELK-VLHLKSMYWLDEWT-MGAGALPKL 190 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~-~~~~~~~~L 190 (249)
+++|+.++++.|.++......+..|++|+.+++..+ +.. ..... |..|++|+ .+.+.. .++.++ ..+..|++|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~-I~~~a-F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT-IGQRV-FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTT-TTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce-ehHHH-hhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence 456667777666665334455666777777777654 221 22334 56666776 777665 455554 345566777
Q ss_pred cceeeccCcCcCCCccccccCcCccEEE
Q 039403 191 ESLIVNPCAYLRKLPEELWCIKSLRKLD 218 (249)
Q Consensus 191 ~~L~l~~~~~~~~l~~~l~~l~~L~~l~ 218 (249)
+.+++.++.+..--+..+..+++|+.+.
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhc
Confidence 7777766664432223556666666654
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.10 E-value=2.7e-10 Score=83.88 Aligned_cols=105 Identities=18% Similarity=0.155 Sum_probs=60.1
Q ss_pred CcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEE
Q 039403 91 LECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLH 170 (249)
Q Consensus 91 L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 170 (249)
.+.++++++. ++.++..+ .++++.|++++|.+++..+..+..+++|++|++++|.+.+.. +.. +..+++|++|+
T Consensus 11 ~~~l~~s~n~-l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~-f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGV-FDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTT-TTTCTTCCEEE
T ss_pred CCEEEeCCCC-cCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhh-ccCCCCCCEEE
Confidence 3455555555 55443222 345666666666666544555666666666666666665422 333 45566666666
Q ss_pred eccCCcccceecc-CcccccccceeeccCcCcC
Q 039403 171 LKSMYWLDEWTMG-AGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 171 l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 202 (249)
+++ |.++.++.. +..+++|+.|++++|++..
T Consensus 85 L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 85 LND-NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCS-SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCC-CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 666 555555543 5566666666666666543
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-10 Score=83.71 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=57.2
Q ss_pred cEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEe
Q 039403 92 ECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHL 171 (249)
Q Consensus 92 ~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 171 (249)
+.++++++. +..++..+ .+.|+.|++++|.+++..+..+..+++|++|++++|.+.+-. +.. +..+++|++|++
T Consensus 15 ~~l~~~~n~-l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~-~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGV-FDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSC-CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTT-TTTCTTCCEEEC
T ss_pred cEEEeCCCC-CCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhH-hCCcchhhEEEC
Confidence 445555544 44443222 345666666666665444555666666666666666655421 223 345666666666
Q ss_pred ccCCcccceecc-CcccccccceeeccCcCc
Q 039403 172 KSMYWLDEWTMG-AGALPKLESLIVNPCAYL 201 (249)
Q Consensus 172 ~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 201 (249)
++ |.++.++.. +..+++|++|++++|++.
T Consensus 89 ~~-N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 89 ND-NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CS-SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CC-CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 66 555555543 455666666666666644
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.1e-10 Score=82.68 Aligned_cols=90 Identities=16% Similarity=0.095 Sum_probs=52.1
Q ss_pred CCCCcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-c
Q 039403 32 PPKNYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-S 108 (249)
Q Consensus 32 ~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~ 108 (249)
.+|..+. ++|++|++.++. ..+ |..+.++++|+.|++++|. .....+..+..+++|+.|+++++. ++.++. .
T Consensus 26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~ 100 (174)
T 2r9u_A 26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK--LTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGA 100 (174)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC--CCccChhHhCCcchhhEEECCCCc-cceeCHHH
Confidence 4555443 566666644443 333 4455666666666666664 333222334566666666666665 665554 3
Q ss_pred CCCCCCCccEEEEEcccCC
Q 039403 109 EYQFPPSLIQLSLSNTELM 127 (249)
Q Consensus 109 ~~~~~~~L~~L~l~~~~~~ 127 (249)
+.. +++|+.|++++|.+.
T Consensus 101 ~~~-l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 101 FDN-LKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTT-CTTCSEEECCSSCBC
T ss_pred hcc-ccCCCEEEeCCCCcc
Confidence 556 777777777777765
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.01 E-value=6.5e-10 Score=81.78 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=55.8
Q ss_pred cee-eecCcccCCCCCCcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEE
Q 039403 20 MHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKL 96 (249)
Q Consensus 20 ~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 96 (249)
+.+ ++++ .+. .+|..+. ++|++|++.++. ..+ +..+.++++|+.|++++|. .....+..+..+++|+.|++
T Consensus 12 ~~l~~s~n-~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~--l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 12 TTVDCSGK-SLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ--LTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TEEECTTS-CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEeCCC-CcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC--cCccChhhccCCCCCCEEEC
Confidence 344 4444 333 3454442 556666644444 333 4445666666666666664 43333334556666666666
Q ss_pred ecCCCceeeee-cCCCCCCCccEEEEEcccCCC
Q 039403 97 VNESKLSRMVL-SEYQFPPSLIQLSLSNTELME 128 (249)
Q Consensus 97 ~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~ 128 (249)
+++. ++.+.. .+.. +++|+.|++++|.+..
T Consensus 86 ~~N~-l~~~~~~~~~~-l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 86 NDNQ-LKSIPRGAFDN-LKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CSSC-CCCCCTTTTTT-CTTCCEEECCSSCBCT
T ss_pred CCCc-cCEeCHHHhcC-CCCCCEEEeCCCCCCC
Confidence 6655 655554 3556 6777777777777653
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.3e-12 Score=104.12 Aligned_cols=156 Identities=19% Similarity=0.092 Sum_probs=73.7
Q ss_pred CcccCeEEEecCccccccchhh----hhc-CCCCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCcccc
Q 039403 62 LPSVQTLRISGNLSCYHSGVSK----SLC-ELHKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPML 134 (249)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~----~l~-~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~ 134 (249)
++.|+.|++++|. ....... .+. ..++|+.|+++++. +..... .... +++|+.|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~-L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVR--MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPV-FLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSC--CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHH-HHTEEEEECCSSCCCHHHHHHH
T ss_pred HhhCCEEEecCCC--CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHH-HHhccHhhcCCCCCCHHHHHHH
Confidence 3456666666664 3322222 222 12466666666644 322111 1112 3456666666666543222222
Q ss_pred -----cCCCCCceEEeeccccCCce---eeeeCCCCCCcccEEEeccCCccc-----ceeccCcccccccceeeccCcCc
Q 039403 135 -----ERLPRLQVLKLKRNSYLGRK---LACAGSGGFPELKVLHLKSMYWLD-----EWTMGAGALPKLESLIVNPCAYL 201 (249)
Q Consensus 135 -----~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~ 201 (249)
...++|+.|++++|.+++.. +... +..+++|++|++++ |.++ .+...+...+.|+.|++++|.+.
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-L~~~~~L~~L~Ls~-N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG-LAGNTSVTHLSLLH-TGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH-HHTCSSCCEEECTT-SSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHH-HhcCCCcCEEeCCC-CCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 23455666666666554321 1112 23455666666666 3444 12333444456666666666654
Q ss_pred C----CCccccccCcCccEEEccCCc
Q 039403 202 R----KLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 202 ~----~l~~~l~~l~~L~~l~l~~~~ 223 (249)
. .+...+..++.|++|++++|.
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 3 123334445666666666664
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.3e-08 Score=82.60 Aligned_cols=126 Identities=12% Similarity=0.113 Sum_probs=75.9
Q ss_pred CCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCC-----CCCcccccCCCCCceEEeeccccCCceeeeeCCCC
Q 039403 89 HKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELM-----EDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGG 162 (249)
Q Consensus 89 ~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 162 (249)
.+|+.+.+.. . ++.+.. +|.. |++|+.+.+..+... ......+..|++|+.+.+.. .+.. ..... +..
T Consensus 248 ~~L~~i~lp~-~-i~~I~~~aF~~-c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~-I~~~a-F~~ 321 (401)
T 4fdw_A 248 SGITTVKLPN-G-VTNIASRAFYY-CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI-LGQGL-LGG 321 (401)
T ss_dssp CCCSEEEEET-T-CCEECTTTTTT-CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE-ECTTT-TTT
T ss_pred CCccEEEeCC-C-ccEEChhHhhC-CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE-Ehhhh-hcC
Confidence 3455555422 1 333332 6677 888888888776543 12335567788888888763 2322 11334 677
Q ss_pred CCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCccccccCc-CccEEEccCCc
Q 039403 163 FPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLPEELWCIK-SLRKLDLHWPQ 223 (249)
Q Consensus 163 ~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~-~L~~l~l~~~~ 223 (249)
|.+|+.+.+.. .++.+.. .+..| +|+.+.+.+|....-....+..++ .++.+.+..+.
T Consensus 322 c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 322 NRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 88888888864 3665554 45567 888888888765432233444553 67777777664
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-08 Score=82.98 Aligned_cols=102 Identities=15% Similarity=0.040 Sum_probs=81.0
Q ss_pred CCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCc-eEEeeccccCCceeeeeCCCCCC
Q 039403 87 ELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQ-VLKLKRNSYLGRKLACAGSGGFP 164 (249)
Q Consensus 87 ~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~ 164 (249)
.+++|+.+++..+. ++.+.- .|.. |++|+.+++..+ +.......+..|++|+ .+.+.. .+.. ..... |..|+
T Consensus 224 ~~~~L~~l~L~~n~-i~~I~~~aF~~-~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~a-F~~c~ 297 (329)
T 3sb4_A 224 YMPNLVSLDISKTN-ATTIPDFTFAQ-KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGA-FMGCD 297 (329)
T ss_dssp HCTTCCEEECTTBC-CCEECTTTTTT-CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTT-TTTCT
T ss_pred hcCCCeEEECCCCC-cceecHhhhhC-CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE-Echhh-hhCCc
Confidence 37899999999877 787776 7888 999999999987 5544557789999999 999976 4432 22446 88999
Q ss_pred cccEEEeccCCcccceec-cCcccccccceee
Q 039403 165 ELKVLHLKSMYWLDEWTM-GAGALPKLESLIV 195 (249)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l 195 (249)
+|+.+++.. +.++.++. .+..|++|+.+..
T Consensus 298 ~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 298 NLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred cCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 999999988 78888776 5678899988753
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.7e-09 Score=87.82 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=89.2
Q ss_pred CCCcccCeEEEecCccc---c----ccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcc
Q 039403 60 GRLPSVQTLRISGNLSC---Y----HSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMP 132 (249)
Q Consensus 60 ~~l~~L~~L~l~~~~~~---~----~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~ 132 (249)
..+++|+.|.+...... . ...+...+..+|+|+.|++.++..++ +. . .. +++|+.|++..|.+......
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~-~-~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IG-K-KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CC-S-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ec-c-cc-CCCCcEEEEecCCCChHHHH
Confidence 34567777776543200 0 12344556677788888887642121 11 1 13 56788888887776543334
Q ss_pred ccc--CCCCCceEEeec--cccCCce-e---eee-CCCCCCcccEEEeccCCccc-ceec---cCcccccccceeeccCc
Q 039403 133 MLE--RLPRLQVLKLKR--NSYLGRK-L---ACA-GSGGFPELKVLHLKSMYWLD-EWTM---GAGALPKLESLIVNPCA 199 (249)
Q Consensus 133 ~~~--~l~~L~~L~l~~--~~~~~~~-~---~~~-~~~~~~~L~~L~l~~~~~~~-~~~~---~~~~~~~L~~L~l~~~~ 199 (249)
.+. .+++|+.|++.. +...+.. . ... ....+++|++|.+.+| .++ .... ....+++|++|+|+.|.
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 443 677888888753 1111110 0 011 0134788888888774 433 1211 12357788888888877
Q ss_pred CcC----CCccccccCcCccEEEccCCc
Q 039403 200 YLR----KLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 200 ~~~----~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.+ .++..+..+++|++|++++|.
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 654 234445567888888888875
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-07 Score=79.22 Aligned_cols=129 Identities=9% Similarity=0.115 Sum_probs=81.4
Q ss_pred hhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCC----ceeeee
Q 039403 84 SLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLG----RKLACA 158 (249)
Q Consensus 84 ~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~ 158 (249)
.|..+++|+.+.+.. . ++.+.. +|.. .+|+.+.+..+ ++......+..|++|+.+.+.++.... ......
T Consensus 221 aF~~~~~L~~l~l~~-~-l~~I~~~aF~~--~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a 295 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPE-N-VSTIGQEAFRE--SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC 295 (401)
T ss_dssp TTTTCTTCCCEECCT-T-CCEECTTTTTT--CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred HhhCCCCCCEEecCC-C-ccCcccccccc--CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence 445555555555543 1 333332 2322 35666666432 332335667888999999998765431 122335
Q ss_pred CCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCC-ccccccCcCccEEEccCCc
Q 039403 159 GSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKL-PEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 159 ~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~l~l~~~~ 223 (249)
+..|++|+.+.+.. .++.+.. .+..|.+|+.+.+..+ +. .+ ...+..+ +|+.+.+.++.
T Consensus 296 -F~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 296 -LEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp -TTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSS
T ss_pred -hhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCC
Confidence 77889999999884 4676665 4568899999999655 32 33 3467778 99999999874
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-09 Score=87.92 Aligned_cols=157 Identities=20% Similarity=0.260 Sum_probs=86.9
Q ss_pred chhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee---cCCCCCCCccEEEEEcc--cCCCC-
Q 039403 56 PDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL---SEYQFPPSLIQLSLSNT--ELMED- 129 (249)
Q Consensus 56 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l---~~~~~~~~L~~L~l~~~--~~~~~- 129 (249)
...+..+|+|+.|+++++. .. .++. + .+++|+.|++..+. +..-.+ .... +|+|+.|+++.+ ...+.
T Consensus 165 ~~ll~~~P~L~~L~L~g~~--~l-~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~-lp~L~~L~L~~~~~~~~~~~ 237 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTN--NL-SIGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSD-LPNLEKLVLYVGVEDYGFDG 237 (362)
T ss_dssp HHHHHTCTTCCEEEEECCB--TC-BCCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSB-CTTCCEEEEECBCGGGTCCS
T ss_pred HHHHhcCCCCcEEEEeCCC--Cc-eecc-c-cCCCCcEEEEecCC-CChHHHHHHHHcc-CCCCcEEEEeccccccccch
Confidence 3444556666677666652 11 2222 2 25666666666533 221111 1124 667777776531 11111
Q ss_pred Cc----ccc--cCCCCCceEEeeccccCCcee--eeeCCCCCCcccEEEeccCCcccc-----eeccCcccccccceeec
Q 039403 130 PM----PML--ERLPRLQVLKLKRNSYLGRKL--ACAGSGGFPELKVLHLKSMYWLDE-----WTMGAGALPKLESLIVN 196 (249)
Q Consensus 130 ~~----~~~--~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~ 196 (249)
.. ..+ ..+++|++|++.+|.+.+... ... ...+++|++|+++. +.++. ++..+..+++|+.|+++
T Consensus 238 ~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 238 DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE-SDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH-CSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh-CccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECC
Confidence 01 122 347889999998877654221 112 23578999999987 66662 34444567899999999
Q ss_pred cCcCcCCCcccccc-CcCccEEEccCCc
Q 039403 197 PCAYLRKLPEELWC-IKSLRKLDLHWPQ 223 (249)
Q Consensus 197 ~~~~~~~l~~~l~~-l~~L~~l~l~~~~ 223 (249)
+|.++......+.. + -..++++.+.
T Consensus 316 ~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 316 YNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 99866432222222 2 3567888876
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.70 E-value=3.7e-08 Score=80.53 Aligned_cols=99 Identities=19% Similarity=0.042 Sum_probs=53.7
Q ss_pred EEEEcc-cCCCCCcccccCCCCCceEEeec-cccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceee
Q 039403 119 LSLSNT-ELMEDPMPMLERLPRLQVLKLKR-NSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIV 195 (249)
Q Consensus 119 L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l 195 (249)
++.+++ .++ ..|. +..+++|+.|++++ |.+.+.. +.. ++.+++|+.|++++ |.++.++. .+..+++|+.|+|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~-~~~-~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLE-LRD-LRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEEC-GGG-SCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEEC
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcC-hhH-hccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeC
Confidence 445554 454 3455 66666666666664 5554322 344 55666666666666 45555443 3456666666666
Q ss_pred ccCcCcCCCccccccCcCccEEEccCCc
Q 039403 196 NPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 196 ~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
++|.+.+ +|..+.....|+.|++.+|+
T Consensus 88 ~~N~l~~-~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 88 SFNALES-LSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSSCCSC-CCSTTTCSCCCCEEECCSSC
T ss_pred CCCccce-eCHHHcccCCceEEEeeCCC
Confidence 6666543 33322222226666666653
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-08 Score=83.16 Aligned_cols=91 Identities=20% Similarity=0.140 Sum_probs=62.5
Q ss_pred Cccccchhhhhcccccee-eec-CcccCCCCCCcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCccccccc
Q 039403 5 YIDQSPEDIWMMQKLMHL-NFG-CITLPAPPKNYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSCYHSG 80 (249)
Q Consensus 5 ~l~~lp~~i~~l~~L~~L-l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (249)
.+++||. +..+++|++| +++ | .+.+..+..++.+++|++|++.++. ..+ +..|.++++|+.|+|++|. +...
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~--l~~~ 95 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA--LESL 95 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC--CSCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc--ccee
Confidence 7888888 8888888888 775 5 7765555677888888888855555 433 3456788888888888885 4432
Q ss_pred hhhhhcCCCCCcEEEEecCC
Q 039403 81 VSKSLCELHKLECLKLVNES 100 (249)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~ 100 (249)
.+..+..++ |+.|++.++.
T Consensus 96 ~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 96 SWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp CSTTTCSCC-CCEEECCSSC
T ss_pred CHHHcccCC-ceEEEeeCCC
Confidence 233344444 8888887755
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=8.6e-11 Score=97.31 Aligned_cols=157 Identities=17% Similarity=0.092 Sum_probs=100.1
Q ss_pred CccccccccccCC-C-----CcchhcC-CCcccCeEEEecCccccccchhhhh-cCCCCCcEEEEecCCCceeeee----
Q 039403 40 LKNLIFISALHPS-S-----CTPDILG-RLPSVQTLRISGNLSCYHSGVSKSL-CELHKLECLKLVNESKLSRMVL---- 107 (249)
Q Consensus 40 l~~L~~L~l~~~~-~-----~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~L~~l~l---- 107 (249)
+++|+.|++.++. + .+...+. ..++|+.|++++|. ........+ ..+++|+.|+++++. +.....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ--LDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC--CCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC--CCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHH
Confidence 4567777755555 2 1223333 33688888888886 443322222 235678888888866 543322
Q ss_pred -cC-CCCCCCccEEEEEcccCCCC----CcccccCCCCCceEEeeccccCCce---eeeeCCCCCCcccEEEeccCCccc
Q 039403 108 -SE-YQFPPSLIQLSLSNTELMED----PMPMLERLPRLQVLKLKRNSYLGRK---LACAGSGGFPELKVLHLKSMYWLD 178 (249)
Q Consensus 108 -~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~ 178 (249)
.+ .. .++|+.|++++|.+++. ....+..+++|++|++++|.+.+.. +... +..+++|++|++++ |.++
T Consensus 148 ~~L~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~-N~i~ 224 (372)
T 3un9_A 148 DLLLHD-QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAY-NGAG 224 (372)
T ss_dssp HHHHST-TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCS-SCCC
T ss_pred HHHHhc-CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCC-CCCC
Confidence 12 34 56789999999987642 2334467888999999988876432 1223 45667899999998 5665
Q ss_pred -----ceeccCcccccccceeeccCcCcC
Q 039403 179 -----EWTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 179 -----~~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
.+...+...+.|++|+|++|.+..
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 233344466889999999998754
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.47 E-value=5.7e-08 Score=71.15 Aligned_cols=83 Identities=8% Similarity=0.052 Sum_probs=41.3
Q ss_pred CccEEEEEcccCCCCCcccccCCCCCceEEeeccc-cCCceeeeeCCCC----CCcccEEEeccCCcccc-eeccCcccc
Q 039403 115 SLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS-YLGRKLACAGSGG----FPELKVLHLKSMYWLDE-WTMGAGALP 188 (249)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~-~~~~~~~~~ 188 (249)
.|+.|++++|.+++.....+..|++|++|++++|. +++.. ... +.. +++|++|++++|..+++ -...+..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g-L~~-L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-LER-LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH-HHH-HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH-HHH-HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 46666666666555455555566666666666553 33322 111 222 23455555555555551 112233455
Q ss_pred cccceeeccCc
Q 039403 189 KLESLIVNPCA 199 (249)
Q Consensus 189 ~L~~L~l~~~~ 199 (249)
+|++|++++|+
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 55555555554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-07 Score=69.49 Aligned_cols=84 Identities=11% Similarity=0.088 Sum_probs=65.4
Q ss_pred CCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccc-eeccCcc----cccccceeeccCc-CcCCCccccccC
Q 039403 138 PRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDE-WTMGAGA----LPKLESLIVNPCA-YLRKLPEELWCI 211 (249)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~----~~~L~~L~l~~~~-~~~~l~~~l~~l 211 (249)
..|+.|+++++.++... ... +..|++|++|++++|..+++ -...+.. +++|++|+|++|. +++.=-..+..+
T Consensus 61 ~~L~~LDLs~~~Itd~G-L~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIG-FDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGG-GGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHH-HHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 46999999999987766 455 77899999999999988882 2222333 4689999999997 554222356789
Q ss_pred cCccEEEccCCc
Q 039403 212 KSLRKLDLHWPQ 223 (249)
Q Consensus 212 ~~L~~l~l~~~~ 223 (249)
++|++|++++|+
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 999999999997
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-07 Score=70.08 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=65.0
Q ss_pred CCCccEEEEEcc-cCCCC----CcccccCCCCCceEEeeccccCCce---eeeeCCCCCCcccEEEeccCCccc-----c
Q 039403 113 PPSLIQLSLSNT-ELMED----PMPMLERLPRLQVLKLKRNSYLGRK---LACAGSGGFPELKVLHLKSMYWLD-----E 179 (249)
Q Consensus 113 ~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~-----~ 179 (249)
.++|+.|++++| .+... +...+...++|++|++++|.+.+.. +... +...++|++|++++ +.++ .
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~-L~~n~~L~~L~L~~-N~i~~~g~~~ 112 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM-LKVNNTLKSLNVES-NFISGSGILA 112 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH-HHHCSSCCEEECCS-SCCCHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHH-HHhCCCcCEEECcC-CcCCHHHHHH
Confidence 445555555555 54422 2233445566777777666664432 0112 33446677777777 4555 2
Q ss_pred eeccCcccccccceee--ccCcCcCC----CccccccCcCccEEEccCCc
Q 039403 180 WTMGAGALPKLESLIV--NPCAYLRK----LPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 180 ~~~~~~~~~~L~~L~l--~~~~~~~~----l~~~l~~l~~L~~l~l~~~~ 223 (249)
+...+...+.|++|++ ++|.+... +.+.+...+.|++|++++|.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4445556677888888 77776542 44556667889999998886
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=6.2e-07 Score=66.66 Aligned_cols=117 Identities=10% Similarity=0.027 Sum_probs=72.0
Q ss_pred chhcCCCcccCeEEEecC-cccccc----chhhhhcCCCCCcEEEEecCCCceeeee-----cCCCCCCCccEEEEEccc
Q 039403 56 PDILGRLPSVQTLRISGN-LSCYHS----GVSKSLCELHKLECLKLVNESKLSRMVL-----SEYQFPPSLIQLSLSNTE 125 (249)
Q Consensus 56 ~~~l~~l~~L~~L~l~~~-~~~~~~----~~~~~l~~l~~L~~L~l~~~~~L~~l~l-----~~~~~~~~L~~L~l~~~~ 125 (249)
...+...+.|++|++++| . ... .+...+...++|++|+++++. +..-.. .+.. .++|++|++++|.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~--i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~-n~~L~~L~L~~N~ 104 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMN--IPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKV-NNTLKSLNVESNF 104 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTT--CCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHH-CSSCCEEECCSSC
T ss_pred HHHHhcCCCCCEEEecCCCC--CCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHh-CCCcCEEECcCCc
Confidence 344556777777777776 4 322 234455666777777777754 332111 3344 5678888888888
Q ss_pred CCCC----CcccccCCCCCceEEe--eccccCCce---eeeeCCCCCCcccEEEeccCCccc
Q 039403 126 LMED----PMPMLERLPRLQVLKL--KRNSYLGRK---LACAGSGGFPELKVLHLKSMYWLD 178 (249)
Q Consensus 126 ~~~~----~~~~~~~l~~L~~L~l--~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~ 178 (249)
+++. +...+...+.|++|++ .+|.+.... +... +...++|++|++++ +.++
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~-n~i~ 164 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHF-TQQG 164 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCC-SSHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccC-CCCC
Confidence 7643 2345566778888888 777776543 1122 34567888888887 4444
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00025 Score=58.79 Aligned_cols=196 Identities=12% Similarity=0.026 Sum_probs=106.4
Q ss_pred hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcc-hhcCCCcccCeEEEecCccc------------
Q 039403 12 DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTP-DILGRLPSVQTLRISGNLSC------------ 76 (249)
Q Consensus 12 ~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~------------ 76 (249)
++..|++|+.+ +..+ ....-...+..+.+|+.+.+ ..+ ..+. ..+.++..|+.+.+..+...
T Consensus 157 aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l-~~~~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~ 233 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKL-PRNLKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVK 233 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCC-CTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCC
T ss_pred hhcccCCCcEEecCCc--cceeccccccCCCCceEEEc-CCCceEeCchhhccccccceeecCCCceEeehhhcccCCCc
Confidence 47778888888 6443 22122334566777887773 333 2222 23455666666655443200
Q ss_pred -------cccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeecc
Q 039403 77 -------YHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRN 148 (249)
Q Consensus 77 -------~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 148 (249)
....-...+..+.+++.+.+..+ ...+.. .+.. +..++.+......+. ...+..+.+|+.+.+..+
T Consensus 234 ~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~-~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 234 NIIIPDSFTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYN-CSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp EEEECTTCCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTT-CTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT
T ss_pred eEEECCCceecccccccccccceeEEcCCC--cceeecccccc-ccccceeccCceeec---cccccccccccccccccc
Confidence 00000112333444444444331 111111 3444 555555555443322 234566778888887543
Q ss_pred ccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCc-cccccCcCccEEEccCCc
Q 039403 149 SYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLP-EELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 149 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~l~l~~~~ 223 (249)
+.. ..... +..|.+|+.+.+.. .++.+.. .+..|.+|+.+.+..+ +. .+. ..+..|.+|+.+++..+-
T Consensus 308 -i~~-I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~~ 377 (394)
T 4fs7_A 308 -VKF-IGEEA-FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKRL 377 (394)
T ss_dssp -CCE-ECTTT-TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGGG
T ss_pred -cce-echhh-hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCCC
Confidence 221 11334 67788899988864 4666654 4568889999988665 22 333 367788999999887664
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00044 Score=57.31 Aligned_cols=110 Identities=11% Similarity=0.117 Sum_probs=72.3
Q ss_pred cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcc
Q 039403 108 SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGA 186 (249)
Q Consensus 108 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~ 186 (249)
+|.. |..|+.+.+..+... .....+..|++|+.+.+.. .+.. ..... +..|.+|+.+.+.. .++.+.. .+..
T Consensus 260 aF~~-c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~-I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~ 332 (394)
T 4gt6_A 260 AFDS-CAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITE-LPESV-FAGCISLKSIDIPE--GITQILDDAFAG 332 (394)
T ss_dssp TTTT-CSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCE-ECTTT-TTTCTTCCEEECCT--TCCEECTTTTTT
T ss_pred eeee-cccccEEecccccce-ecCcccccccccccccCCC-cccc-cCcee-ecCCCCcCEEEeCC--cccEehHhHhhC
Confidence 4555 666777766543221 2234566778888887753 2221 11334 77889999999875 4666654 4668
Q ss_pred cccccceeeccCcCcCCCc-cccccCcCccEEEccCCcHHH
Q 039403 187 LPKLESLIVNPCAYLRKLP-EELWCIKSLRKLDLHWPQTEL 226 (249)
Q Consensus 187 ~~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~l~l~~~~~~~ 226 (249)
|.+|+.+.+..+ +. .+. ..+.+|.+|+.+++.++....
T Consensus 333 C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~ 371 (394)
T 4gt6_A 333 CEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW 371 (394)
T ss_dssp CTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH
T ss_pred CCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh
Confidence 999999999654 22 343 467889999999999986443
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00017 Score=59.81 Aligned_cols=144 Identities=10% Similarity=-0.017 Sum_probs=93.5
Q ss_pred cCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCC
Q 039403 59 LGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLP 138 (249)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 138 (249)
+.++.+++.+.+..+. .......+..+..++.+...... +. ...+.. +.+|+.+.+..+ +..-....+..|.
T Consensus 249 f~~~~~l~~~~~~~~~---~~i~~~~F~~~~~l~~~~~~~~~-i~--~~~F~~-~~~L~~i~l~~~-i~~I~~~aF~~c~ 320 (394)
T 4fs7_A 249 FYGCTDLESISIQNNK---LRIGGSLFYNCSGLKKVIYGSVI-VP--EKTFYG-CSSLTEVKLLDS-VKFIGEEAFESCT 320 (394)
T ss_dssp TTTCSSCCEEEECCTT---CEECSCTTTTCTTCCEEEECSSE-EC--TTTTTT-CTTCCEEEECTT-CCEECTTTTTTCT
T ss_pred ccccccceeEEcCCCc---ceeeccccccccccceeccCcee-ec--cccccc-cccccccccccc-cceechhhhcCCC
Confidence 3456677777776542 22223456778888887765521 11 115667 889999988654 3323346678899
Q ss_pred CCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCccccccCcCccEE
Q 039403 139 RLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKL 217 (249)
Q Consensus 139 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l 217 (249)
+|+.+.+..+ +.. ..... +..|.+|+.+.+.. .++.+.. .+..|.+|+.+.+..+- ..+...+.++++|+.+
T Consensus 321 ~L~~i~lp~~-v~~-I~~~a-F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~~--~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 321 SLVSIDLPYL-VEE-IGKRS-FRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKRL--EQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEECCCTT-CCE-ECTTT-TTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGGG--GGGGGGBCTTCEEEEE
T ss_pred CCCEEEeCCc-ccE-EhHHh-ccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCCC--EEhhheecCCCCCcEE
Confidence 9999998643 321 21345 77899999999976 3666654 46689999999997653 2234467778888765
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.76 E-value=9.2e-06 Score=63.70 Aligned_cols=80 Identities=23% Similarity=0.251 Sum_probs=43.4
Q ss_pred CCCCCceEEeeccccCCce-eeeeCCCCCCcccEEEeccCCcccceeccCcccc--cccceeeccCcCcCCCc-------
Q 039403 136 RLPRLQVLKLKRNSYLGRK-LACAGSGGFPELKVLHLKSMYWLDEWTMGAGALP--KLESLIVNPCAYLRKLP------- 205 (249)
Q Consensus 136 ~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~l~------- 205 (249)
.+++|+.|++++|.+.+-. ++.. +..+++|+.|++++ |.++++. .+..+. +|+.|++++|++.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~-~~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSI-VQKAPNLKILNLSG-NELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTH-HHHSTTCCEEECTT-SCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhH-HhhCCCCCEEECCC-CccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4566666666666665411 0122 33566667777766 5555442 223233 67777777777655443
Q ss_pred cccccCcCccEEE
Q 039403 206 EELWCIKSLRKLD 218 (249)
Q Consensus 206 ~~l~~l~~L~~l~ 218 (249)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1244566666665
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.60 E-value=2.1e-05 Score=61.63 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=30.9
Q ss_pred hhcccccee-eecCcccCC--CCCCcCCCCccccccccccCC-CCcchhcCCCc--ccCeEEEecCc
Q 039403 14 WMMQKLMHL-NFGCITLPA--PPKNYFSSLKNLIFISALHPS-SCTPDILGRLP--SVQTLRISGNL 74 (249)
Q Consensus 14 ~~l~~L~~L-l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~--~L~~L~l~~~~ 74 (249)
..+++|+.| +++| .+.+ .++..+..+++|+.|++.++. ..+ ..+..+. +|++|++++|.
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc
Confidence 345666666 6666 5543 334444556666666644443 222 2222222 66666666664
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0019 Score=53.44 Aligned_cols=82 Identities=11% Similarity=0.089 Sum_probs=49.5
Q ss_pred ccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCC-ccccccC
Q 039403 134 LERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKL-PEELWCI 211 (249)
Q Consensus 134 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l-~~~l~~l 211 (249)
+..|..|+.+.+..... ...... +..|+.|+.+.+. +.++.++. .+..|.+|+.+.+..+ + ..+ ...+..|
T Consensus 261 F~~c~~L~~i~lp~~~~--~I~~~a-F~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~~-v-~~I~~~aF~~C 333 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV--SIGTGA-FMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPEG-I-TQILDDAFAGC 333 (394)
T ss_dssp TTTCSSCCEEECCTTCC--EECTTT-TTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTC
T ss_pred eeecccccEEecccccc--eecCcc-cccccccccccCC--CcccccCceeecCCCCcCEEEeCCc-c-cEehHhHhhCC
Confidence 44556666666643221 111223 5567777777775 34566654 3457888999888654 2 223 2357788
Q ss_pred cCccEEEccCC
Q 039403 212 KSLRKLDLHWP 222 (249)
Q Consensus 212 ~~L~~l~l~~~ 222 (249)
.+|+.+.+..+
T Consensus 334 ~~L~~i~ip~s 344 (394)
T 4gt6_A 334 EQLERIAIPSS 344 (394)
T ss_dssp TTCCEEEECTT
T ss_pred CCCCEEEECcc
Confidence 99999988654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.015 Score=47.69 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=34.0
Q ss_pred CCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCc-cccccCcCccEEEccC
Q 039403 160 SGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLP-EELWCIKSLRKLDLHW 221 (249)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~l~l~~ 221 (249)
+..|.+|+.+.+.+ +.++.+.. .+..|.+|+.+.+..+ + ..+. ..+.+|.+|+.+.+..
T Consensus 282 F~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 282 CSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTA-L-KTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccc-cccceehhhhhcCCCCCCEEEcCcc-c-cEEHHHHhhCCCCCCEEEECC
Confidence 55667777777765 45555543 3456677777777543 1 1222 2455667777666643
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.011 Score=48.54 Aligned_cols=129 Identities=8% Similarity=0.035 Sum_probs=74.8
Q ss_pred hcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccC
Q 039403 58 ILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLER 136 (249)
Q Consensus 58 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 136 (249)
.+..+.+|+.+.+... ........+..+.+|+.+.+..+ ++.+.- .+.. +..|+.+.+..+ +.......+..
T Consensus 212 ~f~~~~~l~~i~~~~~---~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~-~~~l~~i~l~~~-i~~i~~~aF~~ 284 (379)
T 4h09_A 212 GFSYGKNLKKITITSG---VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQN-CTALKTLNFYAK-VKTVPYLLCSG 284 (379)
T ss_dssp TTTTCSSCSEEECCTT---CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTT-CTTCCEEEECCC-CSEECTTTTTT
T ss_pred ccccccccceeeeccc---eeEEccccccCCccceEEEcCCC--ccEeCccccce-eehhcccccccc-ceecccccccc
Confidence 3455667777776554 22222345666777777777542 343332 5555 777777776543 22123345667
Q ss_pred CCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeecc
Q 039403 137 LPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNP 197 (249)
Q Consensus 137 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~ 197 (249)
|.+|+.+.+.++.+..-. ... +..|.+|+.+.+.. .++.+.. .+..|.+|+.+.+..
T Consensus 285 c~~L~~i~l~~~~i~~I~-~~a-F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLE-PRV-FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CTTCCEEEECCTTCCEEC-TTT-TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccceeh-hhh-hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 777888777655443211 334 66777788887764 3555554 355777777777643
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.00037 Score=51.87 Aligned_cols=89 Identities=12% Similarity=0.114 Sum_probs=45.8
Q ss_pred ccCCCCCceEEeeccccCCce---eeeeCCCCCCcccEEEeccCCccc-----ceeccCcccccccceeeccCcC--cC-
Q 039403 134 LERLPRLQVLKLKRNSYLGRK---LACAGSGGFPELKVLHLKSMYWLD-----EWTMGAGALPKLESLIVNPCAY--LR- 202 (249)
Q Consensus 134 ~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~--~~- 202 (249)
+..-..|+.|++++|.+.+.. +... +..-+.|++|+++. |.++ .+...+..-..|+.|+|++|.. .+
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~a-L~~N~tL~~L~L~~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~ 143 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIEL-IETSPSLRVLNVES-NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 143 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHH-HHHCSSCCEEECCS-SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHH-HhcCCccCeEecCC-CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence 334445555555555554322 0111 22345566666666 4554 2223333344577777765421 12
Q ss_pred ----CCccccccCcCccEEEccCCcH
Q 039403 203 ----KLPEELWCIKSLRKLDLHWPQT 224 (249)
Q Consensus 203 ----~l~~~l~~l~~L~~l~l~~~~~ 224 (249)
.+.+.+...+.|.+++++.+..
T Consensus 144 ~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 144 QVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2344566677888888887763
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.041 Score=37.86 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=19.4
Q ss_pred cccEEEeccCCcccceecc-CcccccccceeeccCcC
Q 039403 165 ELKVLHLKSMYWLDEWTMG-AGALPKLESLIVNPCAY 200 (249)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 200 (249)
++++|++++ |.++.++.. +..+++|+.|+|++|++
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 456666665 555555543 23455566666666654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.0061 Score=45.28 Aligned_cols=87 Identities=13% Similarity=0.056 Sum_probs=61.1
Q ss_pred ccCCCCCceEEeecc-ccCCce---eeeeCCCCCCcccEEEeccCCccc-----ceeccCcccccccceeeccCcCcC--
Q 039403 134 LERLPRLQVLKLKRN-SYLGRK---LACAGSGGFPELKVLHLKSMYWLD-----EWTMGAGALPKLESLIVNPCAYLR-- 202 (249)
Q Consensus 134 ~~~l~~L~~L~l~~~-~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~-- 202 (249)
+..-+.|+.|++.++ .+.... +... +..-..|+.|++++ +.++ .+...+..-+.|++|+|+.|.+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~a-L~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEA-ACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHH-HTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHH-HhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 345567899999875 554322 1223 55677899999999 5666 233334445789999999999755
Q ss_pred --CCccccccCcCccEEEccCC
Q 039403 203 --KLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 203 --~l~~~l~~l~~L~~l~l~~~ 222 (249)
.+.+.+.....|++|++++|
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCC
Confidence 34566777888999999864
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=0.14 Score=35.05 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=17.3
Q ss_pred CccEEEEEcccCCCCCcccccCCCCCceEEeeccc
Q 039403 115 SLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS 149 (249)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 149 (249)
+++.|++++|.++......+..+++|+.|++.+|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 45555555555543233334445555555555544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 249 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.88 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.82 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.82 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.8 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.77 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.75 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.75 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.74 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.63 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.63 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.63 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.62 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.62 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.61 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.6 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.6 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.56 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.54 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.37 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.37 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.34 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.33 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.32 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.31 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.3 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.22 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.18 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.1 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.09 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.06 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.02 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.97 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.86 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.85 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.23 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.7 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.53 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.48 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.27 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.86 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.4 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.88 E-value=5.9e-23 Score=164.91 Aligned_cols=207 Identities=20% Similarity=0.216 Sum_probs=142.2
Q ss_pred ccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCccccccchhhh
Q 039403 8 QSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCYHSGVSKS 84 (249)
Q Consensus 8 ~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 84 (249)
.+|++++++++|++| +++++.+.+.+|.+++++++|++|++.++. +..+..+..+++|+.+++++|. ....+|..
T Consensus 67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~--~~~~~p~~ 144 (313)
T d1ogqa_ 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA--LSGTLPPS 144 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE--EESCCCGG
T ss_pred CCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccccccc--ccccCchh
Confidence 689999999999999 887448888999999999999999977766 4556667889999999999987 77778888
Q ss_pred hcCCCCCcEEEEecCCCcee-eeecCCCCCCC-ccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCC
Q 039403 85 LCELHKLECLKLVNESKLSR-MVLSEYQFPPS-LIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGG 162 (249)
Q Consensus 85 l~~l~~L~~L~l~~~~~L~~-l~l~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 162 (249)
+.++++++.++++++. +.. ++..+.. +.. ++.++++.|.+++..+..+..+.. ..+++..+...+.. +.. +..
T Consensus 145 l~~l~~L~~l~l~~n~-l~~~ip~~~~~-l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~-~~~-~~~ 219 (313)
T d1ogqa_ 145 ISSLPNLVGITFDGNR-ISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDA-SVL-FGS 219 (313)
T ss_dssp GGGCTTCCEEECCSSC-CEEECCGGGGC-CCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECC-GGG-CCT
T ss_pred hccCcccceeeccccc-ccccccccccc-cccccccccccccccccccccccccccc-cccccccccccccc-ccc-ccc
Confidence 9999999999998866 543 2224444 443 466777777665545555544432 24555544444333 334 455
Q ss_pred CCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCC
Q 039403 163 FPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 163 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~ 222 (249)
+++++.+++++ +.+...+..++.+++|+.|++++|.+++.+|+.++.+++|++|++++|
T Consensus 220 ~~~l~~l~~~~-~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N 278 (313)
T d1ogqa_ 220 DKNTQKIHLAK-NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp TSCCSEEECCS-SEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccc-ccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence 56666666665 344433344555666666666666666666666666666666666666
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.82 E-value=4.8e-21 Score=153.63 Aligned_cols=209 Identities=17% Similarity=0.169 Sum_probs=173.9
Q ss_pred CCcc-ccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCcccccc
Q 039403 4 SYID-QSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 4 ~~l~-~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
+++. ++|++++++++|++| +++| .+.+..+..+..+.+|+.+++..+. ..+|..+.++++++.+++++|. ..+
T Consensus 87 N~l~g~iP~~i~~L~~L~~L~Ls~N-~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~--l~~ 163 (313)
T d1ogqa_ 87 NNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR--ISG 163 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC--CEE
T ss_pred cccccccccccccccccchhhhccc-cccccccccccchhhhcccccccccccccCchhhccCcccceeeccccc--ccc
Confidence 4444 899999999999999 9998 8887788888899999999965555 6788999999999999999997 777
Q ss_pred chhhhhcCCCCC-cEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeee
Q 039403 80 GVSKSLCELHKL-ECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLAC 157 (249)
Q Consensus 80 ~~~~~l~~l~~L-~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 157 (249)
.+|..+..+.++ +.++++.+. +..... .+.. + ....++++.+...+..+..+..+++++.+++.++.+.+.. .
T Consensus 164 ~ip~~~~~l~~l~~~l~~~~n~-l~~~~~~~~~~-l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~--~ 238 (313)
T d1ogqa_ 164 AIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFAN-L-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL--G 238 (313)
T ss_dssp ECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGG-C-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG--G
T ss_pred cccccccccccccccccccccc-ccccccccccc-c-cccccccccccccccccccccccccccccccccccccccc--c
Confidence 888888888876 777777765 655443 3334 4 3446888888877778888889999999999998887643 3
Q ss_pred eCCCCCCcccEEEeccCCccc-ceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 158 AGSGGFPELKVLHLKSMYWLD-EWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 158 ~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
. ++.+++|+.|++++ |.++ .+|..++.+++|++|++++|.+++.+|+ ++.+++|+.+++++|.
T Consensus 239 ~-~~~~~~L~~L~Ls~-N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 239 K-VGLSKNLNGLDLRN-NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp G-CCCCTTCCEEECCS-SCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred c-cccccccccccCcc-CeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence 5 77889999999999 5666 8999999999999999999999988885 5788999999999985
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=9.1e-20 Score=144.14 Aligned_cols=212 Identities=19% Similarity=0.148 Sum_probs=168.3
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CC-cchhcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SC-TPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++..++++|..+. +++++| +++| .+....+.++..+++|++|++.++. .. .+..+.+++.++.+....+. ..
T Consensus 19 ~~~~L~~iP~~ip--~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~--~~ 93 (284)
T d1ozna_ 19 PQQGLQAVPVGIP--AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA--QL 93 (284)
T ss_dssp CSSCCSSCCTTCC--TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT--TC
T ss_pred CCCCCCccCCCCC--CCCCEEECcCC-cCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc--cc
Confidence 4677999998775 688999 8888 8875455678999999999965555 43 33455678888888876554 33
Q ss_pred cch-hhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceee
Q 039403 79 SGV-SKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 79 ~~~-~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
..+ +..++++++|+.|+++++. +..+.. .+.. +++|+.+++++|.++...+..+..+++|+.|++++|.+.... +
T Consensus 94 ~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~-~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~-~ 170 (284)
T d1ozna_ 94 RSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRG-LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-E 170 (284)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-T
T ss_pred ccccchhhcccccCCEEecCCcc-cccccccccch-hcccchhhhccccccccChhHhccccchhhcccccCcccccc-h
Confidence 333 6678999999999999977 655544 4555 788999999999998655677888999999999999886533 4
Q ss_pred eeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 157 CAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 157 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.. +..+++|+.+.+++ +.++.+ |..+..+++|++|++++|.+.+..+..++.+++|+++++++|+
T Consensus 171 ~~-f~~l~~L~~l~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 171 RA-FRGLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp TT-TTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred hh-hccccccchhhhhh-ccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence 55 77899999999999 566654 6778899999999999999887666788899999999999974
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.1e-19 Score=142.43 Aligned_cols=180 Identities=21% Similarity=0.185 Sum_probs=110.1
Q ss_pred CCCCcCCCCccccccccccCC-CCcc-hhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecC
Q 039403 32 PPKNYFSSLKNLIFISALHPS-SCTP-DILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSE 109 (249)
Q Consensus 32 ~~~~~~~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~ 109 (249)
++|..+. +++++|++.++. ..++ ..|.++++|++|++++|. . ..++ .++.+++|+.|+++++. ++.....+
T Consensus 24 ~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~--l-~~l~-~~~~l~~L~~L~Ls~N~-l~~~~~~~ 96 (266)
T d1p9ag_ 24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE--L-TKLQ-VDGTLPVLGTLDLSHNQ-LQSLPLLG 96 (266)
T ss_dssp SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC--C-CEEE-CCSCCTTCCEEECCSSC-CSSCCCCT
T ss_pred eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccc--c-cccc-ccccccccccccccccc-cccccccc
Confidence 4555443 456666644444 4444 345666777777776664 2 2333 24556677777776655 55554455
Q ss_pred CCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceecc-Ccccc
Q 039403 110 YQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMG-AGALP 188 (249)
Q Consensus 110 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~ 188 (249)
.. ++.|+.++++++.+.......+..+.+++.|++.+|.+..-. +.. +..++.++.+++++ +.++.++.. +..++
T Consensus 97 ~~-l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~-~~~-~~~l~~l~~l~l~~-N~l~~~~~~~~~~l~ 172 (266)
T d1p9ag_ 97 QT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGL-LTPTPKLEKLSLAN-NNLTELPAGLLNGLE 172 (266)
T ss_dssp TT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTT-TTTCTTCCEEECTT-SCCSCCCTTTTTTCT
T ss_pred cc-ccccccccccccccceeeccccccccccccccccccccceec-ccc-ccccccchhccccc-ccccccCcccccccc
Confidence 55 667777777777666544555566677777777766655422 333 45566777777777 566655443 45667
Q ss_pred cccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 189 KLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 189 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+|++|+|++|.+. .+|+.+..+++|+.+++++|+
T Consensus 173 ~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred ccceeecccCCCc-ccChhHCCCCCCCEEEecCCC
Confidence 7777777777755 567666677777777777664
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2.3e-18 Score=134.71 Aligned_cols=189 Identities=20% Similarity=0.145 Sum_probs=155.6
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
++..+++||+.+. +++++| +++| .+....+..+..+++|++|++.++. ..++ .++.+++|+.|++++|. . .
T Consensus 18 ~~~~L~~iP~~lp--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~Ls~N~--l-~ 90 (266)
T d1p9ag_ 18 DKRNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQ--L-Q 90 (266)
T ss_dssp TTSCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEECCSSC--C-S
T ss_pred cCCCCCeeCcCcC--cCCCEEECcCC-cCCCcCHHHhhccccccccccccccccccc-ccccccccccccccccc--c-c
Confidence 5778999998875 689999 9888 8875455678999999999966666 5555 35789999999999995 3 4
Q ss_pred chhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeee
Q 039403 80 GVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACA 158 (249)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 158 (249)
..+..+..+++|+.|+++++. +..+.. .+.. +++++.+++++|.+....+..+..+++++.+++++|.+.+.. +..
T Consensus 91 ~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~-l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~-~~~ 167 (266)
T d1p9ag_ 91 SLPLLGQTLPALTVLDVSFNR-LTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGL 167 (266)
T ss_dssp SCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-TTT
T ss_pred ccccccccccccccccccccc-cceeecccccc-ccccccccccccccceeccccccccccchhcccccccccccC-ccc
Confidence 456678899999999999966 555544 4556 889999999999998655666778899999999999987644 455
Q ss_pred CCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcC
Q 039403 159 GSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 159 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
+..+++|++|++++ |.++.+|..+..+++|+.|+|++|++..
T Consensus 168 -~~~l~~L~~L~Ls~-N~L~~lp~~~~~~~~L~~L~L~~Np~~C 209 (266)
T d1p9ag_ 168 -LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (266)
T ss_dssp -TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred -cccccccceeeccc-CCCcccChhHCCCCCCCEEEecCCCCCC
Confidence 77899999999999 7899999999999999999999999754
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.75 E-value=1.5e-17 Score=132.44 Aligned_cols=206 Identities=19% Similarity=0.207 Sum_probs=115.4
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCC-CcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCccccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPK-NYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
+.+++++|+.+. +++++| +++| .+. ++| .++.++++|++|++.++. ..+ |..+.++++|+.|++++|. .
T Consensus 19 ~~~L~~lP~~l~--~~l~~L~Ls~N-~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~--l- 91 (305)
T d1xkua_ 19 DLGLEKVPKDLP--PDTALLDLQNN-KIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ--L- 91 (305)
T ss_dssp TSCCCSCCCSCC--TTCCEEECCSS-CCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC--C-
T ss_pred CCCCCccCCCCC--CCCCEEECcCC-cCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc--c-
Confidence 345777777653 567777 6666 555 343 356677777777755555 333 4456677777777777663 1
Q ss_pred cchhhh------------------------------------------------hcCCCCCcEEEEecCCCceeeeecCC
Q 039403 79 SGVSKS------------------------------------------------LCELHKLECLKLVNESKLSRMVLSEY 110 (249)
Q Consensus 79 ~~~~~~------------------------------------------------l~~l~~L~~L~l~~~~~L~~l~l~~~ 110 (249)
..+|.. +..+++|+.+++..+. +..++ ..
T Consensus 92 ~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~--~~ 168 (305)
T d1xkua_ 92 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIP--QG 168 (305)
T ss_dssp SBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCC--SS
T ss_pred CcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccC--cc
Confidence 112211 1122222222222222 22111 11
Q ss_pred CCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccc
Q 039403 111 QFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKL 190 (249)
Q Consensus 111 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 190 (249)
. +++++.|++++|......+..+..++.++.|++.+|.+.+.. +.. +..+++|++|++++ +.++.+|..+..+++|
T Consensus 169 ~-~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~-~~~-~~~l~~L~~L~L~~-N~L~~lp~~l~~l~~L 244 (305)
T d1xkua_ 169 L-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGS-LANTPHLRELHLNN-NKLVKVPGGLADHKYI 244 (305)
T ss_dssp C-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTT-GGGSTTCCEEECCS-SCCSSCCTTTTTCSSC
T ss_pred c-CCccCEEECCCCcCCCCChhHhhccccccccccccccccccc-ccc-ccccccceeeeccc-ccccccccccccccCC
Confidence 2 445666666666555444555666666777777666655422 334 45567777777777 4666677666677777
Q ss_pred cceeeccCcCcCCCcc-------ccccCcCccEEEccCCc
Q 039403 191 ESLIVNPCAYLRKLPE-------ELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 191 ~~L~l~~~~~~~~l~~-------~l~~l~~L~~l~l~~~~ 223 (249)
+.|++++|++.. ++. .......|+.+++++|+
T Consensus 245 ~~L~Ls~N~i~~-i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 245 QVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp CEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CEEECCCCccCc-cChhhccCcchhcccCCCCEEECCCCc
Confidence 777777776542 322 22345667777777776
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.75 E-value=9.6e-18 Score=133.60 Aligned_cols=181 Identities=19% Similarity=0.145 Sum_probs=137.1
Q ss_pred CCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee
Q 039403 30 PAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL 107 (249)
Q Consensus 30 ~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l 107 (249)
..++|..+. +++++|++.++. ..+++ .+.++++|+.|+++++. .....|..|.++++|+.|+++++. ++.++.
T Consensus 22 L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~--~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~ 96 (305)
T d1xkua_ 22 LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK--ISKISPGAFAPLVKLERLYLSKNQ-LKELPE 96 (305)
T ss_dssp CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSC-CSBCCS
T ss_pred CCccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccc--ccccchhhhhCCCccCEecccCCc-cCcCcc
Confidence 347787664 689999977766 77776 68899999999999996 665557789999999999998844 222211
Q ss_pred ------------------------------------------------cCCCCCCCccEEEEEcccCCCCCcccccCCCC
Q 039403 108 ------------------------------------------------SEYQFPPSLIQLSLSNTELMEDPMPMLERLPR 139 (249)
Q Consensus 108 ------------------------------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 139 (249)
.+.. +++|+.++++.|.+. ..+.. .+++
T Consensus 97 ~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~-l~~L~~l~l~~n~l~-~l~~~--~~~~ 172 (305)
T d1xkua_ 97 KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-MKKLSYIRIADTNIT-TIPQG--LPPS 172 (305)
T ss_dssp SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG-CTTCCEEECCSSCCC-SCCSS--CCTT
T ss_pred chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcccccc-ccccCccccccCCcc-ccCcc--cCCc
Confidence 3444 567777777777665 23332 2567
Q ss_pred CceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccccee-ccCcccccccceeeccCcCcCCCccccccCcCccEEE
Q 039403 140 LQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWT-MGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLD 218 (249)
Q Consensus 140 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~ 218 (249)
++.|++.+|...... +.. +..++.++.|++++ +.+++++ ..+..+++|+.|++++|.+. .+|+.+..+++|++|+
T Consensus 173 L~~L~l~~n~~~~~~-~~~-~~~~~~l~~L~~s~-n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~ 248 (305)
T d1xkua_ 173 LTELHLDGNKITKVD-AAS-LKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 248 (305)
T ss_dssp CSEEECTTSCCCEEC-TGG-GTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred cCEEECCCCcCCCCC-hhH-hhcccccccccccc-ccccccccccccccccceeeeccccccc-ccccccccccCCCEEE
Confidence 888888877765543 455 77888999999998 5777664 45668899999999999875 6788899999999999
Q ss_pred ccCCc
Q 039403 219 LHWPQ 223 (249)
Q Consensus 219 l~~~~ 223 (249)
+++|.
T Consensus 249 Ls~N~ 253 (305)
T d1xkua_ 249 LHNNN 253 (305)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 99985
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3.9e-18 Score=134.60 Aligned_cols=195 Identities=18% Similarity=0.141 Sum_probs=159.1
Q ss_pred CCCCCccccch-hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCc-chhcCCCcccCeEEEecCcc
Q 039403 1 MPSSYIDQSPE-DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCT-PDILGRLPSVQTLRISGNLS 75 (249)
Q Consensus 1 l~~~~l~~lp~-~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~l~~l~~L~~L~l~~~~~ 75 (249)
|++|+++++|. ++..+++|++| ++.+ .+....+..+..+..++.+.....+ ..+ +..+.++++|++|++++|.
T Consensus 39 Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~- 116 (284)
T d1ozna_ 39 LHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG- 116 (284)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-
T ss_pred CcCCcCCCCCHHHhhccccccccccccc-cccccccccccccccccccccccccccccccchhhcccccCCEEecCCcc-
Confidence 57899999997 58999999999 8887 7776666677778888888744444 333 5678899999999999986
Q ss_pred ccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCce
Q 039403 76 CYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRK 154 (249)
Q Consensus 76 ~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 154 (249)
.....+..+..+++|+.++++++. +..++. .+.. +++|+.|++++|.+....+..+..+++|+.+++.+|.+.+..
T Consensus 117 -~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~-~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~ 193 (284)
T d1ozna_ 117 -LQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRD-LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193 (284)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred -cccccccccchhcccchhhhcccc-ccccChhHhcc-ccchhhcccccCcccccchhhhccccccchhhhhhccccccC
Confidence 544445667788999999999987 887764 5777 889999999999987655677889999999999999887644
Q ss_pred eeeeCCCCCCcccEEEeccCCccccee-ccCcccccccceeeccCcCcCC
Q 039403 155 LACAGSGGFPELKVLHLKSMYWLDEWT-MGAGALPKLESLIVNPCAYLRK 203 (249)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 203 (249)
+.. +..+++|++|++++ +.+..++ ..+..+++|+.|++++|++..+
T Consensus 194 -~~~-f~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~ 240 (284)
T d1ozna_ 194 -PHA-FRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (284)
T ss_dssp -TTT-TTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred -hhH-hhhhhhcccccccc-cccccccccccccccccCEEEecCCCCCCC
Confidence 666 88899999999999 6777554 5677899999999999997653
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=2.1e-16 Score=120.47 Aligned_cols=197 Identities=18% Similarity=0.200 Sum_probs=148.3
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSG 80 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (249)
.++++.+. .+..+.+|++| +.+| .+. .++ .+..+++|++|++.++. ..+. .+..+++|+.+++++|. . ..
T Consensus 28 ~~~~~d~~-~~~~l~~L~~L~l~~~-~i~-~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~--~-~~ 99 (227)
T d1h6ua2 28 KSNVTDTV-TQADLDGITTLSAFGT-GVT-TIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNP--L-KN 99 (227)
T ss_dssp CSSTTSEE-CHHHHHTCCEEECTTS-CCC-CCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCC--C-SC
T ss_pred CCCcCCcC-CHHHcCCcCEEECCCC-CCC-cch-hHhcCCCCcEeecCCceeeccc-ccccccccccccccccc--c-cc
Confidence 45555543 56788999999 8877 665 453 58889999999966665 4443 37889999999999885 3 33
Q ss_pred hhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCC
Q 039403 81 VSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGS 160 (249)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 160 (249)
++ .+..+++|+.++++... ...+. .+.. .+.+..+.++.+.+.. ...+..+++|++|++.+|.+.+. .. +
T Consensus 100 i~-~l~~l~~L~~l~l~~~~-~~~~~-~~~~-~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~---~~-l 169 (227)
T d1h6ua2 100 VS-AIAGLQSIKTLDLTSTQ-ITDVT-PLAG-LSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDL---TP-L 169 (227)
T ss_dssp CG-GGTTCTTCCEEECTTSC-CCCCG-GGTT-CTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCC---GG-G
T ss_pred cc-ccccccccccccccccc-ccccc-hhcc-ccchhhhhchhhhhch--hhhhccccccccccccccccccc---hh-h
Confidence 33 57789999999998854 33322 3445 6788889888887753 34567788999999998887652 34 6
Q ss_pred CCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccC
Q 039403 161 GGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHW 221 (249)
Q Consensus 161 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~ 221 (249)
..+++|+.|++++ +.+++++. +..+++|++|++++|+++ .++. +..+++|+++++++
T Consensus 170 ~~l~~L~~L~Ls~-n~l~~l~~-l~~l~~L~~L~Ls~N~lt-~i~~-l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 170 ANLSKLTTLKADD-NKISDISP-LASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTN 226 (227)
T ss_dssp TTCTTCCEEECCS-SCCCCCGG-GGGCTTCCEEECTTSCCC-BCGG-GTTCTTCCEEEEEE
T ss_pred cccccceecccCC-CccCCChh-hcCCCCCCEEECcCCcCC-CCcc-cccCCCCCEEEeeC
Confidence 7899999999999 57887764 678899999999999876 4553 78999999999874
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.63 E-value=2.4e-15 Score=122.80 Aligned_cols=194 Identities=18% Similarity=0.178 Sum_probs=149.3
Q ss_pred ccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhh
Q 039403 8 QSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSL 85 (249)
Q Consensus 8 ~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 85 (249)
..+.....+++++.+ +..+ .+.+..+ ...+++|++|++.++. ..+ +.+..+++|+.+++++|. ..+ ++ .+
T Consensus 188 ~~~~~~~~l~~~~~l~l~~n-~i~~~~~--~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~--l~~-~~-~~ 259 (384)
T d2omza2 188 SDISVLAKLTNLESLIATNN-QISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQ--ISN-LA-PL 259 (384)
T ss_dssp CCCGGGGGCTTCSEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC--CCC-CG-GG
T ss_pred ccccccccccccceeeccCC-ccCCCCc--ccccCCCCEEECCCCCCCCc-chhhcccccchhccccCc--cCC-CC-cc
Confidence 345567888889998 7776 6654333 4567889999955555 444 457788999999999985 433 33 37
Q ss_pred cCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCc
Q 039403 86 CELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPE 165 (249)
Q Consensus 86 ~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 165 (249)
..+++|+.|+++++. +..+. .+.. ++.++.++++.|.+++ +..+..+++++.|++++|.+.+. .. +..+++
T Consensus 260 ~~~~~L~~L~l~~~~-l~~~~-~~~~-~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l---~~-l~~l~~ 330 (384)
T d2omza2 260 SGLTKLTELKLGANQ-ISNIS-PLAG-LTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI---SP-VSSLTK 330 (384)
T ss_dssp TTCTTCSEEECCSSC-CCCCG-GGTT-CTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC---GG-GGGCTT
T ss_pred cccccCCEeeccCcc-cCCCC-cccc-cccccccccccccccc--ccccchhcccCeEECCCCCCCCC---cc-cccCCC
Confidence 788999999998866 66544 5666 7889999999988863 45678889999999999988763 23 667899
Q ss_pred ccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCC
Q 039403 166 LKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 166 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~ 222 (249)
|++|++++ +.++.++ .+..+++|+.|++++|++++ +++ +..+++|+.|++++|
T Consensus 331 L~~L~L~~-n~l~~l~-~l~~l~~L~~L~l~~N~l~~-l~~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 331 LQRLFFAN-NKVSDVS-SLANLTNINWLSAGHNQISD-LTP-LANLTRITQLGLNDQ 383 (384)
T ss_dssp CCEEECCS-SCCCCCG-GGGGCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEECCCE
T ss_pred CCEEECCC-CCCCCCh-hHcCCCCCCEEECCCCcCCC-Chh-hccCCCCCEeeCCCC
Confidence 99999999 5788776 47789999999999999774 443 788999999999987
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.63 E-value=4.8e-15 Score=121.00 Aligned_cols=206 Identities=18% Similarity=0.148 Sum_probs=133.6
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++++.++++ +++..+++|++| +++| .+.+ ++ .++++++|++|++.++. ..++ .++++++|+.++++++. ..
T Consensus 51 l~~~~I~~l-~gl~~L~nL~~L~Ls~N-~l~~-l~-~l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L~~~~~~--~~ 123 (384)
T d2omza2 51 ADRLGIKSI-DGVEYLNNLTQINFSNN-QLTD-IT-PLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQ--IT 123 (384)
T ss_dssp CCSSCCCCC-TTGGGCTTCCEEECCSS-CCCC-CG-GGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC--CC
T ss_pred CCCCCCCCc-cccccCCCCCEEeCcCC-cCCC-Cc-cccCCccccccccccccccccc-ccccccccccccccccc--cc
Confidence 356777777 467788888888 7777 6653 43 37788888888855555 4443 36777888887776543 10
Q ss_pred cc---------------------------------------------------------------hhhh-----------
Q 039403 79 SG---------------------------------------------------------------VSKS----------- 84 (249)
Q Consensus 79 ~~---------------------------------------------------------------~~~~----------- 84 (249)
.. ....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 203 (384)
T d2omza2 124 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 203 (384)
T ss_dssp CCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceee
Confidence 00 0001
Q ss_pred -----------hcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCc
Q 039403 85 -----------LCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGR 153 (249)
Q Consensus 85 -----------l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 153 (249)
...+++|+.|+++++. ++.+. .+.. +++|+.+++++|.+++ ...++.+++|+.++++++.+.+.
T Consensus 204 l~~n~i~~~~~~~~~~~L~~L~l~~n~-l~~~~-~l~~-l~~L~~L~l~~n~l~~--~~~~~~~~~L~~L~l~~~~l~~~ 278 (384)
T d2omza2 204 ATNNQISDITPLGILTNLDELSLNGNQ-LKDIG-TLAS-LTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNI 278 (384)
T ss_dssp CCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGGG-CTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC
T ss_pred ccCCccCCCCcccccCCCCEEECCCCC-CCCcc-hhhc-ccccchhccccCccCC--CCcccccccCCEeeccCcccCCC
Confidence 1223455555555544 44432 4555 7778888888887763 23466677777777766655431
Q ss_pred ee-------------------eeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCc
Q 039403 154 KL-------------------ACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSL 214 (249)
Q Consensus 154 ~~-------------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L 214 (249)
.. ... +..+++++.+++++ +.+++++. +..+++|+.|++++|.++ .++ .+..+++|
T Consensus 279 ~~~~~~~~l~~l~~~~n~l~~~~~-~~~~~~l~~L~ls~-n~l~~l~~-l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L 353 (384)
T d2omza2 279 SPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYF-NNISDISP-VSSLTKLQRLFFANNKVS-DVS-SLANLTNI 353 (384)
T ss_dssp GGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCS-SCCSCCGG-GGGCTTCCEEECCSSCCC-CCG-GGGGCTTC
T ss_pred Cccccccccccccccccccccccc-cchhcccCeEECCC-CCCCCCcc-cccCCCCCEEECCCCCCC-CCh-hHcCCCCC
Confidence 10 112 34567888888888 56776653 678899999999999876 455 58889999
Q ss_pred cEEEccCCc
Q 039403 215 RKLDLHWPQ 223 (249)
Q Consensus 215 ~~l~l~~~~ 223 (249)
+++++++|.
T Consensus 354 ~~L~l~~N~ 362 (384)
T d2omza2 354 NWLSAGHNQ 362 (384)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 999999986
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.63 E-value=2.4e-15 Score=113.20 Aligned_cols=165 Identities=24% Similarity=0.277 Sum_probs=130.5
Q ss_pred CCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCcc
Q 039403 39 SLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLI 117 (249)
Q Consensus 39 ~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~ 117 (249)
.+.+|++|++.++. ..+ ..+.++++|++|++++|. .. .++ .++.+++|+.|+++++. ++.++ .+.. +++|+
T Consensus 44 ~L~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~L~~n~--i~-~l~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~-l~~L~ 115 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNK--LT-DIK-PLANLKNLGWLFLDENK-VKDLS-SLKD-LKKLK 115 (210)
T ss_dssp HHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSC--CC-CCG-GGTTCTTCCEEECCSSC-CCCGG-GGTT-CTTCC
T ss_pred HhcCccEEECcCCCCCCc-hhHhhCCCCCEEeCCCcc--cc-Ccc-ccccCcccccccccccc-ccccc-cccc-ccccc
Confidence 57788888855555 443 357789999999999985 43 344 36789999999999877 77765 6777 89999
Q ss_pred EEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeecc
Q 039403 118 QLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNP 197 (249)
Q Consensus 118 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 197 (249)
.+++++|.+.. ...+..+++++.+++.++.+.+ ... +..+++|+.+++++ +.+++++. +..+++|+.|++++
T Consensus 116 ~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~---~~~-~~~l~~L~~l~l~~-n~l~~i~~-l~~l~~L~~L~Ls~ 187 (210)
T d1h6ta2 116 SLSLEHNGISD--INGLVHLPQLESLYLGNNKITD---ITV-LSRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYLSK 187 (210)
T ss_dssp EEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC---CGG-GGGCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEECCS
T ss_pred ccccccccccc--cccccccccccccccccccccc---ccc-cccccccccccccc-cccccccc-ccCCCCCCEEECCC
Confidence 99999998752 4567888999999999888765 234 56788999999999 57777664 77899999999999
Q ss_pred CcCcCCCccccccCcCccEEEccC
Q 039403 198 CAYLRKLPEELWCIKSLRKLDLHW 221 (249)
Q Consensus 198 ~~~~~~l~~~l~~l~~L~~l~l~~ 221 (249)
|.+. +++ .+..+++|++|++++
T Consensus 188 N~i~-~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 188 NHIS-DLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp SCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred CCCC-CCh-hhcCCCCCCEEEccC
Confidence 9875 565 588999999999874
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.62 E-value=1.4e-15 Score=114.52 Aligned_cols=165 Identities=21% Similarity=0.253 Sum_probs=117.0
Q ss_pred hhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCC
Q 039403 14 WMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKL 91 (249)
Q Consensus 14 ~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 91 (249)
..+..|++| +..+ .+. .++ .+..+++|++|++.++. ..++ .++++++|+.|++++|. . ..++ .+..+++|
T Consensus 43 ~~L~~L~~L~l~~~-~i~-~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~--i-~~l~-~l~~l~~L 114 (210)
T d1h6ta2 43 NELNSIDQIIANNS-DIK-SVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENK--V-KDLS-SLKDLKKL 114 (210)
T ss_dssp HHHHTCCEEECTTS-CCC-CCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC--C-CCGG-GGTTCTTC
T ss_pred HHhcCccEEECcCC-CCC-Cch-hHhhCCCCCEEeCCCccccCcc-ccccCcccccccccccc--c-cccc-cccccccc
Confidence 456778888 6666 554 233 36778888888865555 5554 35778888888888874 3 3444 47778888
Q ss_pred cEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEe
Q 039403 92 ECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHL 171 (249)
Q Consensus 92 ~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 171 (249)
+.|+++++. +..+. .+.. ++.++.++++.+.+++ +..+..+++|+.+++.+|.+.+ ... +..+++|++|++
T Consensus 115 ~~L~l~~~~-~~~~~-~l~~-l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~---i~~-l~~l~~L~~L~L 185 (210)
T d1h6ta2 115 KSLSLEHNG-ISDIN-GLVH-LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD---IVP-LAGLTKLQNLYL 185 (210)
T ss_dssp CEEECTTSC-CCCCG-GGGG-CTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC---CGG-GTTCTTCCEEEC
T ss_pred ccccccccc-ccccc-cccc-cccccccccccccccc--cccccccccccccccccccccc---ccc-ccCCCCCCEEEC
Confidence 888888865 44443 5666 7788888888887753 4456778888888888887765 223 667888888888
Q ss_pred ccCCcccceeccCcccccccceeecc
Q 039403 172 KSMYWLDEWTMGAGALPKLESLIVNP 197 (249)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~L~~L~l~~ 197 (249)
++ +.+++++ .+..+++|+.|+|++
T Consensus 186 s~-N~i~~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 186 SK-NHISDLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CS-SCCCBCG-GGTTCTTCSEEEEEE
T ss_pred CC-CCCCCCh-hhcCCCCCCEEEccC
Confidence 88 5677776 467788888888764
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.62 E-value=3.8e-15 Score=113.35 Aligned_cols=177 Identities=16% Similarity=0.200 Sum_probs=138.1
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
+.++.+++++ .+..+++|++| +++| .+.+.. .+..+++++++++.++. ..+ ..+.++++|+.++++++. ..
T Consensus 48 l~~~~i~~l~-~l~~l~~L~~L~ls~n-~i~~~~--~l~~l~~l~~l~~~~n~~~~i-~~l~~l~~L~~l~l~~~~--~~ 120 (227)
T d1h6ua2 48 AFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLA--PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQ--IT 120 (227)
T ss_dssp CTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCG--GGTTCCSCCEEECCSCCCSCC-GGGTTCTTCCEEECTTSC--CC
T ss_pred CCCCCCCcch-hHhcCCCCcEeecCCc-eeeccc--ccccccccccccccccccccc-cccccccccccccccccc--cc
Confidence 4678999995 69999999999 9888 766433 37889999999955555 444 467899999999999885 33
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACA 158 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 158 (249)
. . ..+...+.++.+.++... +.... .+.. +++|+.++++.|.+.+ ...++.+++|+.|++++|.+.+ ...
T Consensus 121 ~-~-~~~~~~~~~~~l~~~~~~-~~~~~-~~~~-~~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~Ls~n~l~~---l~~ 190 (227)
T d1h6ua2 121 D-V-TPLAGLSNLQVLYLDLNQ-ITNIS-PLAG-LTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISD---ISP 190 (227)
T ss_dssp C-C-GGGTTCTTCCEEECCSSC-CCCCG-GGGG-CTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCC---CGG
T ss_pred c-c-chhccccchhhhhchhhh-hchhh-hhcc-cccccccccccccccc--chhhcccccceecccCCCccCC---Chh
Confidence 2 2 346678888999887754 44332 4566 8899999999998863 3458889999999999998865 234
Q ss_pred CCCCCCcccEEEeccCCcccceeccCcccccccceeecc
Q 039403 159 GSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNP 197 (249)
Q Consensus 159 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 197 (249)
+..+++|++|++++ +.+++++. +..+++|+.|++++
T Consensus 191 -l~~l~~L~~L~Ls~-N~lt~i~~-l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 191 -LASLPNLIEVHLKN-NQISDVSP-LANTSNLFIVTLTN 226 (227)
T ss_dssp -GGGCTTCCEEECTT-SCCCBCGG-GTTCTTCCEEEEEE
T ss_pred -hcCCCCCCEEECcC-CcCCCCcc-cccCCCCCEEEeeC
Confidence 66889999999999 57888774 77899999999874
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.61 E-value=6.1e-15 Score=109.98 Aligned_cols=162 Identities=20% Similarity=0.257 Sum_probs=123.0
Q ss_pred CCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCc
Q 039403 38 SSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSL 116 (249)
Q Consensus 38 ~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L 116 (249)
..+.++++|++.+++ ..+ +.+..+++|++|++++|. ... +++ ++.+++|+.|+++++. +..+. .+.. ++.|
T Consensus 37 ~~l~~l~~L~l~~~~i~~l-~~l~~l~nL~~L~Ls~N~--l~~-~~~-l~~l~~L~~L~l~~n~-~~~~~-~l~~-l~~L 108 (199)
T d2omxa2 37 TDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQ--LTD-ITP-LKNLTKLVDILMNNNQ-IADIT-PLAN-LTNL 108 (199)
T ss_dssp HHHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSC--CCC-CGG-GTTCTTCCEEECCSSC-CCCCG-GGTT-CTTC
T ss_pred HHhcCCCEEECCCCCCCCc-cccccCCCcCcCcccccc--ccC-ccc-ccCCcccccccccccc-ccccc-cccc-cccc
Confidence 457788888866655 433 456778899999999885 433 333 7888999999998866 55544 5677 8899
Q ss_pred cEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeec
Q 039403 117 IQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVN 196 (249)
Q Consensus 117 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 196 (249)
+.++++++.... ...+..+++|+.+++++|.+.. ... +..+++++.|++.+ +.++.++. +..+++|+.|+++
T Consensus 109 ~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~---~~~-l~~~~~L~~L~l~~-n~l~~l~~-l~~l~~L~~L~ls 180 (199)
T d2omxa2 109 TGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD---ISA-LSGLTSLQQLNFSS-NQVTDLKP-LANLTTLERLDIS 180 (199)
T ss_dssp SEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCC---CGG-GTTCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEECC
T ss_pred cccccccccccc--ccccchhhhhHHhhhhhhhhcc---ccc-cccccccccccccc-ccccCCcc-ccCCCCCCEEECC
Confidence 999999887753 3557788999999999888764 334 67889999999998 57777654 6788999999999
Q ss_pred cCcCcCCCccccccCcCccEE
Q 039403 197 PCAYLRKLPEELWCIKSLRKL 217 (249)
Q Consensus 197 ~~~~~~~l~~~l~~l~~L~~l 217 (249)
+|+++ +++ .+..+++|++|
T Consensus 181 ~N~i~-~i~-~l~~L~~L~~L 199 (199)
T d2omxa2 181 SNKVS-DIS-VLAKLTNLESL 199 (199)
T ss_dssp SSCCC-CCG-GGGGCTTCSEE
T ss_pred CCCCC-CCc-cccCCCCCCcC
Confidence 99865 454 47788888765
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.60 E-value=5.9e-15 Score=110.04 Aligned_cols=125 Identities=19% Similarity=0.248 Sum_probs=53.7
Q ss_pred hcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCC
Q 039403 85 LCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFP 164 (249)
Q Consensus 85 l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 164 (249)
+..+++|++|+++++. +..+. .+.. +++|+.|++++|.+.. ...++.+++|+.+++.++..... .. +..++
T Consensus 58 l~~l~nL~~L~Ls~N~-l~~~~-~l~~-l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~~~~~~~---~~-~~~l~ 128 (199)
T d2omxa2 58 VEYLNNLTQINFSNNQ-LTDIT-PLKN-LTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDI---DP-LKNLT 128 (199)
T ss_dssp GGGCTTCCEEECCSSC-CCCCG-GGTT-CTTCCEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC---GG-GTTCT
T ss_pred cccCCCcCcCcccccc-ccCcc-cccC-Cccccccccccccccc--ccccccccccccccccccccccc---cc-cchhh
Confidence 3444455555554443 43332 2344 4445555555444431 12344444555555444433321 12 33444
Q ss_pred cccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCC
Q 039403 165 ELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~ 222 (249)
+|+.+++++ +.+..++ .+..+++++.|++.+|.+.+ ++ .++.+++|++|++++|
T Consensus 129 ~L~~L~l~~-n~l~~~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N 182 (199)
T d2omxa2 129 NLNRLELSS-NTISDIS-ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSN 182 (199)
T ss_dssp TCSEEECCS-SCCCCCG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSS
T ss_pred hhHHhhhhh-hhhcccc-cccccccccccccccccccC-Cc-cccCCCCCCEEECCCC
Confidence 455555544 3333332 23344445555555544332 22 2444455555555544
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.1e-16 Score=126.28 Aligned_cols=183 Identities=20% Similarity=0.131 Sum_probs=132.9
Q ss_pred cCCCCccccccccccCC---CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee--cCC
Q 039403 36 YFSSLKNLIFISALHPS---SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL--SEY 110 (249)
Q Consensus 36 ~~~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~ 110 (249)
......+|++|++.++. ..+...+.++++|++|++++|. .....+..+..+++|++|++++...+..-.+ ...
T Consensus 41 ~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~--l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~ 118 (284)
T d2astb2 41 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR--LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118 (284)
T ss_dssp SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB--CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC--CCcHHHHHHhcCCCCcCccccccccccccccchhhH
Confidence 34466799999966555 2345567889999999999997 6667778888999999999988332432221 234
Q ss_pred CCCCCccEEEEEccc-CCCCC-ccccc-CCCCCceEEeeccc--cCCceeeeeCCCCCCcccEEEeccCCccc-ceeccC
Q 039403 111 QFPPSLIQLSLSNTE-LMEDP-MPMLE-RLPRLQVLKLKRNS--YLGRKLACAGSGGFPELKVLHLKSMYWLD-EWTMGA 184 (249)
Q Consensus 111 ~~~~~L~~L~l~~~~-~~~~~-~~~~~-~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~ 184 (249)
. +++|++|++++|. +++.. ...+. .+++|+.|++.++. +++..+... ...|++|++|++++|..++ +....+
T Consensus 119 ~-~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l-~~~~~~L~~L~L~~~~~itd~~~~~l 196 (284)
T d2astb2 119 S-CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEF 196 (284)
T ss_dssp H-CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred H-HHhccccccccccccccccchhhhcccccccchhhhccccccccccccccc-ccccccccccccccccCCCchhhhhh
Confidence 5 8899999999974 33221 12233 35789999998753 333332333 4568999999999988887 566677
Q ss_pred cccccccceeeccCc-CcCCCccccccCcCccEEEccCC
Q 039403 185 GALPKLESLIVNPCA-YLRKLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 185 ~~~~~L~~L~l~~~~-~~~~l~~~l~~l~~L~~l~l~~~ 222 (249)
..+++|++|++++|. +++.-...++.+++|+.+++++|
T Consensus 197 ~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 789999999999986 55444456788999999999998
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=9.4e-15 Score=112.12 Aligned_cols=209 Identities=17% Similarity=0.109 Sum_probs=129.7
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CC-c-chhcCCCcccCeEEEecCccccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SC-T-PDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-~-~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
+..++++|+.+. +++++| +++| .+....+..+..+++|++|++.++. .. + +..+.++++++++.+..+. ...
T Consensus 17 ~~~l~~iP~~l~--~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n-~l~ 92 (242)
T d1xwdc1 17 ESKVTEIPSDLP--RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN-NLL 92 (242)
T ss_dssp SCSCSSCCSCSC--SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT-TCC
T ss_pred CCCCCCcCCCCC--CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc-ccc
Confidence 456888887663 578888 8777 6653333457788889988865555 32 3 2346678888888876543 133
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCcccccCCC-CCceEEeeccccCCcee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLP-RLQVLKLKRNSYLGRKL 155 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~ 155 (249)
...+..+..+++|+.+++.++. +..... .+.. ++.+..+....+.+.......+..++ .++.+++.++.+.. .
T Consensus 93 ~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~-l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i- 168 (242)
T d1xwdc1 93 YINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHS-LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-I- 168 (242)
T ss_dssp EECTTSEECCTTCCEEEEESCC-CCSCCCCTTTCB-SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-E-
T ss_pred ccccccccccccccccccchhh-hccccccccccc-ccccccccccccccccccccccccccccceeeecccccccc-c-
Confidence 4445667888888888888865 554432 2222 33444444444444432334444443 67778887777653 1
Q ss_pred eeeCCCCCCcccEEEeccCCcccceecc-CcccccccceeeccCcCcCCCcc-ccccCcCccEEEccC
Q 039403 156 ACAGSGGFPELKVLHLKSMYWLDEWTMG-AGALPKLESLIVNPCAYLRKLPE-ELWCIKSLRKLDLHW 221 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~l~l~~ 221 (249)
... .....++..+....++.+++++.. +..+++|+.|++++|++. .+|. .+..++.|+.+++.+
T Consensus 169 ~~~-~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 169 HNC-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp CTT-TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSEES
T ss_pred ccc-cccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcCCC
Confidence 222 334556666665555778888764 567888999999888865 4544 455666666555543
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.8e-16 Score=124.97 Aligned_cols=207 Identities=17% Similarity=0.142 Sum_probs=138.4
Q ss_pred ccccchhhhhcccccee-eecCcccCCC-CCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCccccccch
Q 039403 6 IDQSPEDIWMMQKLMHL-NFGCITLPAP-PKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCYHSGV 81 (249)
Q Consensus 6 l~~lp~~i~~l~~L~~L-l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (249)
+...........+|++| ++++ .+... ++..+.++++|++|++.++. ...+..++.+++|+.|++++|.......+
T Consensus 35 ~~~~~~~~~~~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l 113 (284)
T d2astb2 35 MDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL 113 (284)
T ss_dssp ECSCCCSCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHH
T ss_pred cccchhhhccCCCCCEEECCCC-ccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccccc
Confidence 33334445566789999 8887 65433 44456789999999977666 45667788899999999999751111234
Q ss_pred hhhhcCCCCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEccc--CCCCCc-ccccCCCCCceEEeeccc-cCCcee
Q 039403 82 SKSLCELHKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTE--LMEDPM-PMLERLPRLQVLKLKRNS-YLGRKL 155 (249)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~--~~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~ 155 (249)
...+..+++|++|++++...+..-.+ .+...++.|+.|+++++. +++... .....+++|++|++++|. +++..
T Consensus 114 ~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~- 192 (284)
T d2astb2 114 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC- 192 (284)
T ss_dssp HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-
T ss_pred chhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchh-
Confidence 44556789999999988432322111 222215789999998763 333222 334678999999998865 44444
Q ss_pred eeeCCCCCCcccEEEeccCCccc-ceeccCcccccccceeeccCcCcCCCccccccCcCcc
Q 039403 156 ACAGSGGFPELKVLHLKSMYWLD-EWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLR 215 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~ 215 (249)
... +..+++|++|++++|+.++ +....++.+++|+.|++++|--.+.+......++.|+
T Consensus 193 ~~~-l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~ 252 (284)
T d2astb2 193 FQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252 (284)
T ss_dssp GGG-GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE
T ss_pred hhh-hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc
Confidence 455 6778999999999988887 4445577889999999999832223333334466665
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.37 E-value=9e-14 Score=102.90 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=63.2
Q ss_pred ccccccccccCC-CC-c-chhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCc
Q 039403 41 KNLIFISALHPS-SC-T-PDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSL 116 (249)
Q Consensus 41 ~~L~~L~l~~~~-~~-~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L 116 (249)
+++++|++.++. .. + +..|.++++|+.|++++|. .....+..+..+++|+.|+++++. ++.++. +|.. +++|
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~--i~~~~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F~~-l~~L 104 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ--LTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLG-LHQL 104 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTT-CTTC
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeeccccc--cccccccccccccccceeeecccc-ccccCHHHHhC-CCcc
Confidence 455555533333 21 2 2234556666666666664 444444555566666666666655 666554 4566 6777
Q ss_pred cEEEEEcccCCCCCcccccCCCCCceEEeeccccC
Q 039403 117 IQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYL 151 (249)
Q Consensus 117 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 151 (249)
+.|++++|.++...+..+..+++|+++++++|.+.
T Consensus 105 ~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 105 KTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cccccCCccccccCHHHhcCCcccccccccccccc
Confidence 77777777776444555667777777777777654
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.3e-13 Score=99.04 Aligned_cols=105 Identities=18% Similarity=0.151 Sum_probs=59.9
Q ss_pred CCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec--cCcccccc
Q 039403 113 PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM--GAGALPKL 190 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L 190 (249)
+++|+.|++++|.++ .. +.+..+++|++|++++|.+..-. +.. +..+++|++|++++ |.++.++. .+..+++|
T Consensus 40 l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~-~~~-~~~l~~L~~L~L~~-N~i~~~~~l~~l~~l~~L 114 (162)
T d1a9na_ 40 LDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIG-EGL-DQALPDLTELILTN-NSLVELGDLDPLASLKSL 114 (162)
T ss_dssp TTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEEC-SCH-HHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTC
T ss_pred cccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCC-ccc-cccccccccceecc-cccccccccccccccccc
Confidence 444555555555543 11 33455566666666666554311 222 23466677777766 45554442 35567778
Q ss_pred cceeeccCcCcCCCc----cccccCcCccEEEccCCc
Q 039403 191 ESLIVNPCAYLRKLP----EELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 191 ~~L~l~~~~~~~~l~----~~l~~l~~L~~l~l~~~~ 223 (249)
+++++++|++.. .+ ..+..+|+|++||-....
T Consensus 115 ~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~~~i~ 150 (162)
T d1a9na_ 115 TYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK 150 (162)
T ss_dssp CEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred chhhcCCCcccc-ccchHHHHHHHCCCcCeeCCCCCC
Confidence 888888887643 33 246678888888766543
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.34 E-value=8.3e-13 Score=97.57 Aligned_cols=147 Identities=18% Similarity=0.057 Sum_probs=103.9
Q ss_pred CCcchhcCCCcccCeEEEecCccccccch-hhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCC
Q 039403 53 SCTPDILGRLPSVQTLRISGNLSCYHSGV-SKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDP 130 (249)
Q Consensus 53 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~ 130 (249)
..+|..+. +++++|++++|. +...+ +..|..+++|+.|+++++. +..+.. .+.. +++|+.|++++|++....
T Consensus 21 ~~iP~~lp--~~l~~L~Ls~N~--i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~~~~~-~~~L~~L~Ls~N~l~~l~ 94 (192)
T d1w8aa_ 21 KEIPRDIP--LHTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEG-ASHIQELQLGENKIKEIS 94 (192)
T ss_dssp SSCCSCCC--TTCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTT-CTTCCEEECCSCCCCEEC
T ss_pred CccCCCCC--CCCCEEEeCCCC--CcccccccccCCCceEeeeeccccc-ccccccccccc-ccccceeeeccccccccC
Confidence 56776553 689999999996 54433 4567889999999998877 666655 6666 888999999999988655
Q ss_pred cccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCcccc
Q 039403 131 MPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEEL 208 (249)
Q Consensus 131 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l 208 (249)
+..+..+++|++|++++|.+..-. +.. +..+++|+++++++ +.+........-...++.+.+..+.+....|..+
T Consensus 95 ~~~F~~l~~L~~L~L~~N~l~~i~-~~~-f~~l~~L~~l~L~~-N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l 169 (192)
T d1w8aa_ 95 NKMFLGLHQLKTLNLYDNQISCVM-PGS-FEHLNSLTSLNLAS-NPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV 169 (192)
T ss_dssp SSSSTTCTTCCEEECCSSCCCEEC-TTS-STTCTTCCEEECTT-CCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTT
T ss_pred HHHHhCCCcccccccCCccccccC-HHH-hcCCcccccccccc-cccccccchHHHhhhhhhhcccCCCeEeCCChhh
Confidence 667888999999999999886533 455 77888999999988 4444222111112345666666666555555543
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.5e-11 Score=93.74 Aligned_cols=181 Identities=17% Similarity=0.129 Sum_probs=125.3
Q ss_pred CCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccccccch-hhhhcCCCCCcEEEEecCCCceeeee-
Q 039403 32 PPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYHSGV-SKSLCELHKLECLKLVNESKLSRMVL- 107 (249)
Q Consensus 32 ~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~L~~l~l- 107 (249)
.+|..+. .++++|++.++. ..++. .|.++++|++|++++|. ....+ +..+..+++++.+.+.....+.....
T Consensus 22 ~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~--~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~ 97 (242)
T d1xwdc1 22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND--VLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 97 (242)
T ss_dssp SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCT--TCCEECSSSEESCTTCCEEEEECCTTCCEECTT
T ss_pred CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhcccc--ccceeeccccccccccccccccccccccccccc
Confidence 6776554 589999966666 66665 57899999999999996 55444 34678899999999876332665554
Q ss_pred cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceE---EeeccccCCceeeeeCCCCC-CcccEEEeccCCcccceecc
Q 039403 108 SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVL---KLKRNSYLGRKLACAGSGGF-PELKVLHLKSMYWLDEWTMG 183 (249)
Q Consensus 108 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L---~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~ 183 (249)
.+.. +++|+.++++.+.+... .....+.+++.+ ...++.+.... ... +..+ ..+..+++.+ +.++.++..
T Consensus 98 ~~~~-l~~L~~l~l~~~~l~~~--~~~~~~~~l~~l~~~~~~n~~l~~i~-~~~-~~~~~~~l~~L~l~~-n~l~~i~~~ 171 (242)
T d1xwdc1 98 AFQN-LPNLQYLLISNTGIKHL--PDVHKIHSLQKVLLDIQDNINIHTIE-RNS-FVGLSFESVILWLNK-NGIQEIHNC 171 (242)
T ss_dssp SEEC-CTTCCEEEEESCCCCSC--CCCTTTCBSSCEEEEEESCTTCCEEC-TTS-STTSBSSCEEEECCS-SCCCEECTT
T ss_pred cccc-cccccccccchhhhccc--cccccccccccccccccccccccccc-ccc-cccccccceeeeccc-ccccccccc
Confidence 5677 99999999999988632 233344444444 33333333211 222 3333 4788899988 788888877
Q ss_pred Cccccccccee-eccCcCcCCCcc-ccccCcCccEEEccCCc
Q 039403 184 AGALPKLESLI-VNPCAYLRKLPE-ELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 184 ~~~~~~L~~L~-l~~~~~~~~l~~-~l~~l~~L~~l~l~~~~ 223 (249)
.....+++.+. +++|.+. .+|. .+..+++|++|++++|.
T Consensus 172 ~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~ 212 (242)
T d1xwdc1 172 AFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTR 212 (242)
T ss_dssp TTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSC
T ss_pred cccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCc
Confidence 76677776665 4555554 5665 46889999999999995
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.32 E-value=3.8e-11 Score=96.14 Aligned_cols=83 Identities=18% Similarity=0.141 Sum_probs=50.6
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
|+++.++++|+. .++|++| +++| .+. ++|..+ .+|+.|++.++. ..++. + .+.|++|++++|. .
T Consensus 45 Ls~~~L~~lp~~---~~~L~~L~Ls~N-~l~-~lp~~~---~~L~~L~l~~n~l~~l~~-l--p~~L~~L~L~~n~--l- 110 (353)
T d1jl5a_ 45 LNNLGLSSLPEL---PPHLESLVASCN-SLT-ELPELP---QSLKSLLVDNNNLKALSD-L--PPLLEYLGVSNNQ--L- 110 (353)
T ss_dssp CTTSCCSCCCSC---CTTCSEEECCSS-CCS-SCCCCC---TTCCEEECCSSCCSCCCS-C--CTTCCEEECCSSC--C-
T ss_pred eCCCCCCCCCCC---CCCCCEEECCCC-CCc-ccccch---hhhhhhhhhhcccchhhh-h--ccccccccccccc--c-
Confidence 567889999964 5788999 8777 766 677654 455666644444 33321 1 1346777777663 2
Q ss_pred cchhhhhcCCCCCcEEEEec
Q 039403 79 SGVSKSLCELHKLECLKLVN 98 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~ 98 (249)
..+|. +..+++|+.|++.+
T Consensus 111 ~~lp~-~~~l~~L~~L~l~~ 129 (353)
T d1jl5a_ 111 EKLPE-LQNSSFLKIIDVDN 129 (353)
T ss_dssp SSCCC-CTTCTTCCEEECCS
T ss_pred ccccc-hhhhccceeecccc
Confidence 33442 45566677776655
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.31 E-value=2.4e-12 Score=88.12 Aligned_cols=82 Identities=23% Similarity=0.218 Sum_probs=33.7
Q ss_pred CCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec--cCcccccc
Q 039403 113 PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM--GAGALPKL 190 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L 190 (249)
+++|++|++++|.++ ..|..++.+++|+.|++++|.+.+ ... +..+++|+++++++ |.+++++. .+..+++|
T Consensus 19 l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~---l~~-~~~l~~L~~L~l~~-N~i~~~~~~~~l~~~~~L 92 (124)
T d1dcea3 19 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN---VDG-VANLPRLQELLLCN-NRLQQSAAIQPLVSCPRL 92 (124)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC---CGG-GTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTC
T ss_pred CCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc---cCc-cccccccCeEECCC-CccCCCCCchhhcCCCCC
Confidence 334444444444443 233334444444444444444432 112 33444444444444 33333321 23344444
Q ss_pred cceeeccCcC
Q 039403 191 ESLIVNPCAY 200 (249)
Q Consensus 191 ~~L~l~~~~~ 200 (249)
+.+++++|++
T Consensus 93 ~~L~l~~N~i 102 (124)
T d1dcea3 93 VLLNLQGNSL 102 (124)
T ss_dssp CEEECTTSGG
T ss_pred CEEECCCCcC
Confidence 4444444443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=8.4e-13 Score=94.78 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=78.6
Q ss_pred cCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCC
Q 039403 59 LGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLP 138 (249)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 138 (249)
+.++.++++|++++|. ...++..+..+++|+.|+++++. ++.+. .+.. +++|+.|++++|.++...+..+..++
T Consensus 14 ~~n~~~lr~L~L~~n~---I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~-~~~~-l~~L~~L~ls~N~i~~l~~~~~~~l~ 87 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYK---IPVIENLGATLDQFDAIDFSDNE-IRKLD-GFPL-LRRLKTLLVNNNRICRIGEGLDQALP 87 (162)
T ss_dssp EECTTSCEEEECTTSC---CCSCCCGGGGTTCCSEEECCSSC-CCEEC-CCCC-CSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred ccCcCcCcEEECCCCC---CCccCccccccccCCEEECCCCC-CCccC-Cccc-CcchhhhhcccccccCCCcccccccc
Confidence 3456677777777774 23344445567777777777766 66654 5666 77777777777777633333345677
Q ss_pred CCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec----cCccccccccee
Q 039403 139 RLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM----GAGALPKLESLI 194 (249)
Q Consensus 139 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~ 194 (249)
+|+.|++++|.+........ +..+++|+++++++ |.++..+. .+..+|+|+.||
T Consensus 88 ~L~~L~L~~N~i~~~~~l~~-l~~l~~L~~L~l~~-N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 88 DLTELILTNNSLVELGDLDP-LASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp TCCEEECCSCCCCCGGGGGG-GGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEET
T ss_pred ccccceeccccccccccccc-cccccccchhhcCC-CccccccchHHHHHHHCCCcCeeC
Confidence 77777777776654221233 55667777777777 45554432 345566777665
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.22 E-value=1.3e-11 Score=84.36 Aligned_cols=99 Identities=23% Similarity=0.211 Sum_probs=83.8
Q ss_pred cEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeec
Q 039403 117 IQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVN 196 (249)
Q Consensus 117 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 196 (249)
+.|++++|.++ .. ..++.+++|++|++++|.+.. .+.. +..+++|+.|++++ |.++.++. +..+++|++|+++
T Consensus 1 R~L~Ls~n~l~-~l-~~l~~l~~L~~L~ls~N~l~~--lp~~-~~~l~~L~~L~l~~-N~i~~l~~-~~~l~~L~~L~l~ 73 (124)
T d1dcea3 1 RVLHLAHKDLT-VL-CHLEQLLLVTHLDLSHNRLRA--LPPA-LAALRCLEVLQASD-NALENVDG-VANLPRLQELLLC 73 (124)
T ss_dssp SEEECTTSCCS-SC-CCGGGGTTCCEEECCSSCCCC--CCGG-GGGCTTCCEEECCS-SCCCCCGG-GTTCSSCCEEECC
T ss_pred CEEEcCCCCCC-CC-cccccCCCCCEEECCCCccCc--chhh-hhhhhccccccccc-ccccccCc-cccccccCeEECC
Confidence 57899999997 33 458899999999999999875 2556 77899999999999 78888864 7889999999999
Q ss_pred cCcCcCCCc--cccccCcCccEEEccCCc
Q 039403 197 PCAYLRKLP--EELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 197 ~~~~~~~l~--~~l~~l~~L~~l~l~~~~ 223 (249)
+|++.. ++ ..+..+++|+.+++++|+
T Consensus 74 ~N~i~~-~~~~~~l~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 74 NNRLQQ-SAAIQPLVSCPRLVLLNLQGNS 101 (124)
T ss_dssp SSCCCS-SSTTGGGGGCTTCCEEECTTSG
T ss_pred CCccCC-CCCchhhcCCCCCCEEECCCCc
Confidence 999764 33 467889999999999997
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.18 E-value=7.8e-14 Score=103.67 Aligned_cols=130 Identities=21% Similarity=0.225 Sum_probs=70.5
Q ss_pred chhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeC
Q 039403 80 GVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAG 159 (249)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 159 (249)
.++..+..+++|++|+++++. ++.+. .+.. +++|+.|++++|.++ ..+.....+++|+.|++.+|.++.- ..
T Consensus 39 ~l~~sl~~L~~L~~L~Ls~n~-I~~i~-~l~~-l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l---~~- 110 (198)
T d1m9la_ 39 KMDATLSTLKACKHLALSTNN-IEKIS-SLSG-MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL---SG- 110 (198)
T ss_dssp CCHHHHHHTTTCCEEECSEEE-ESCCC-CHHH-HTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH---HH-
T ss_pred hhhhHHhcccccceeECcccC-CCCcc-cccC-CccccChhhcccccc-ccccccccccccccccccccccccc---cc-
Confidence 344455555555555555544 44432 3444 556666666666654 2333333344566666666665431 22
Q ss_pred CCCCCcccEEEeccCCccccee--ccCcccccccceeeccCcCcCCCcc----------ccccCcCccEEE
Q 039403 160 SGGFPELKVLHLKSMYWLDEWT--MGAGALPKLESLIVNPCAYLRKLPE----------ELWCIKSLRKLD 218 (249)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~l~~----------~l~~l~~L~~l~ 218 (249)
+..+++|+.|++++ |.++.++ ..+..+++|+.|++++|++....+. .+..+|+|+.||
T Consensus 111 ~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 111 IEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred cccccccccccccc-chhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 34556666777666 4555443 2345666777777777764332111 145677787776
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.10 E-value=2.9e-12 Score=103.09 Aligned_cols=92 Identities=18% Similarity=0.102 Sum_probs=63.8
Q ss_pred ccccchhhhhcccccee-eecCcccCC----CCCCcCCCCccccccccccCC-C----C-------cchhcCCCcccCeE
Q 039403 6 IDQSPEDIWMMQKLMHL-NFGCITLPA----PPKNYFSSLKNLIFISALHPS-S----C-------TPDILGRLPSVQTL 68 (249)
Q Consensus 6 l~~lp~~i~~l~~L~~L-l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~-~----~-------~~~~l~~l~~L~~L 68 (249)
+..+...+.....|+.| +++| .+.. .+...+...++|+.|++.++. . . +...+..+++|+.|
T Consensus 20 ~~~l~~~L~~~~~l~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L 98 (344)
T d2ca6a1 20 EKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 98 (344)
T ss_dssp HHTTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHhhCCCCCEEECcCC-cCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccc
Confidence 45677788889999999 8887 6633 233456677888888865443 1 1 23445678899999
Q ss_pred EEecCcccccc----chhhhhcCCCCCcEEEEecCC
Q 039403 69 RISGNLSCYHS----GVSKSLCELHKLECLKLVNES 100 (249)
Q Consensus 69 ~l~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~ 100 (249)
++++|. ... .+...+..+++|++|+++++.
T Consensus 99 ~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 132 (344)
T d2ca6a1 99 RLSDNA--FGPTAQEPLIDFLSKHTPLEHLYLHNNG 132 (344)
T ss_dssp ECCSCC--CCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred cccccc--cccccccchhhhhcccccchheeccccc
Confidence 999886 333 245566678899999998743
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.09 E-value=9e-10 Score=87.88 Aligned_cols=201 Identities=19% Similarity=0.192 Sum_probs=120.3
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
+++|.|+++|+.+ ++|++| +.++ .+. .++. + .+.|++|++.++. ..+|. ++.+++|+.++++++. ..
T Consensus 65 Ls~N~l~~lp~~~---~~L~~L~l~~n-~l~-~l~~-l--p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~--~~ 133 (353)
T d1jl5a_ 65 ASCNSLTELPELP---QSLKSLLVDNN-NLK-ALSD-L--PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNS--LK 133 (353)
T ss_dssp CCSSCCSSCCCCC---TTCCEEECCSS-CCS-CCCS-C--CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSC--CS
T ss_pred CCCCCCcccccch---hhhhhhhhhhc-ccc-hhhh-h--ccccccccccccccccccc-hhhhccceeecccccc--cc
Confidence 5789999999764 578888 7777 544 3332 1 2468999965555 66664 5789999999998874 11
Q ss_pred cc------------------hhhhhcCCCCCcEEEEecCCC---------ceeeee---------cCCCCCCCccEEEEE
Q 039403 79 SG------------------VSKSLCELHKLECLKLVNESK---------LSRMVL---------SEYQFPPSLIQLSLS 122 (249)
Q Consensus 79 ~~------------------~~~~l~~l~~L~~L~l~~~~~---------L~~l~l---------~~~~~~~~L~~L~l~ 122 (249)
.. ....+..++.++.+.+..+.. ...+.. .... ++.++.++++
T Consensus 134 ~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~L~~l~l~ 212 (353)
T d1jl5a_ 134 KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQN-LPFLTTIYAD 212 (353)
T ss_dssp CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTT-CTTCCEEECC
T ss_pred ccccccccccchhhccccccccccccccccceecccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 10 011234456677777665220 011111 3444 6778888887
Q ss_pred cccCCCCCccccc-----------------CCCCCceEEeeccccCC---------------ceeeeeCCCCCCcccEEE
Q 039403 123 NTELMEDPMPMLE-----------------RLPRLQVLKLKRNSYLG---------------RKLACAGSGGFPELKVLH 170 (249)
Q Consensus 123 ~~~~~~~~~~~~~-----------------~l~~L~~L~l~~~~~~~---------------~~~~~~~~~~~~~L~~L~ 170 (249)
.+.... .+.... ....+...++..+.+.+ ...... ...+++|++|+
T Consensus 213 ~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~L~~L~ 290 (353)
T d1jl5a_ 213 NNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL-CDLPPSLEELN 290 (353)
T ss_dssp SSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEE-CCCCTTCCEEE
T ss_pred cccccc-cccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccc-cccCCCCCEEE
Confidence 775432 111111 01122333332221110 000112 33467999999
Q ss_pred eccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 171 LKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 171 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+++ +.++.+|. .+++|+.|++++|.++ .+|+. +++|++|++++|+
T Consensus 291 Ls~-N~l~~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~ 335 (353)
T d1jl5a_ 291 VSN-NKLIELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNP 335 (353)
T ss_dssp CCS-SCCSCCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSC
T ss_pred CCC-CccCcccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCc
Confidence 999 57788775 3678999999999976 57753 5689999999996
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.06 E-value=3.3e-12 Score=102.76 Aligned_cols=209 Identities=15% Similarity=0.065 Sum_probs=139.8
Q ss_pred ccchhhhhcccccee-eecCcccCC---C-------CCCcCCCCccccccccccCC-CC-----cchhcCCCcccCeEEE
Q 039403 8 QSPEDIWMMQKLMHL-NFGCITLPA---P-------PKNYFSSLKNLIFISALHPS-SC-----TPDILGRLPSVQTLRI 70 (249)
Q Consensus 8 ~lp~~i~~l~~L~~L-l~~~~~~~~---~-------~~~~~~~l~~L~~L~l~~~~-~~-----~~~~l~~l~~L~~L~l 70 (249)
.+-..+...++|+.+ +..+ .... . +...+..+++|+.|++.++. +. +...+..+++|+.|++
T Consensus 50 ~l~~~l~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l 128 (344)
T d2ca6a1 50 WLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128 (344)
T ss_dssp HHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHhCCCCCEEECCCC-cccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheec
Confidence 355567788999999 7765 3211 1 22335567899999966655 22 4445567899999999
Q ss_pred ecCccccccc----hhhh---------hcCCCCCcEEEEecCCCceee-----eecCCCCCCCccEEEEEcccCCCC---
Q 039403 71 SGNLSCYHSG----VSKS---------LCELHKLECLKLVNESKLSRM-----VLSEYQFPPSLIQLSLSNTELMED--- 129 (249)
Q Consensus 71 ~~~~~~~~~~----~~~~---------l~~l~~L~~L~l~~~~~L~~l-----~l~~~~~~~~L~~L~l~~~~~~~~--- 129 (249)
++|. .... +... ....+.|+.+.++.+. +..- .-.+.. +++++.+++++|.+...
T Consensus 129 ~~n~--l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~-i~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~g~~ 204 (344)
T d2ca6a1 129 HNNG--LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQS-HRLLHTVKMVQNGIRPEGIE 204 (344)
T ss_dssp CSSC--CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHH-CTTCCEEECCSSCCCHHHHH
T ss_pred cccc--ccccccccccccccccccccccccCcccceeeccccc-ccccccccccchhhh-hhhhcccccccccccccccc
Confidence 9986 3221 1111 2356789999988754 3321 114556 78899999999988642
Q ss_pred --CcccccCCCCCceEEeeccccCCce---eeeeCCCCCCcccEEEeccCCccc-----ceeccCc--ccccccceeecc
Q 039403 130 --PMPMLERLPRLQVLKLKRNSYLGRK---LACAGSGGFPELKVLHLKSMYWLD-----EWTMGAG--ALPKLESLIVNP 197 (249)
Q Consensus 130 --~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~--~~~~L~~L~l~~ 197 (249)
....+..+++|+.|++++|.++... +... +..+++|++|++++| .++ .+...+. ..+.|++|++++
T Consensus 205 ~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~-l~~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~ 282 (344)
T d2ca6a1 205 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQY 282 (344)
T ss_dssp HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred cchhhhhcchhhhccccccccccccccccccccc-ccccccchhhhhhcC-ccCchhhHHHHHHhhhccCCCCCEEECCC
Confidence 2234667899999999999875432 1234 567899999999995 555 1222222 346799999999
Q ss_pred CcCcCC----Cccccc-cCcCccEEEccCCc
Q 039403 198 CAYLRK----LPEELW-CIKSLRKLDLHWPQ 223 (249)
Q Consensus 198 ~~~~~~----l~~~l~-~l~~L~~l~l~~~~ 223 (249)
|.+... +...+. .++.|+++++++|.
T Consensus 283 N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 283 NEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp SCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence 997542 334443 57899999999986
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.02 E-value=1.3e-12 Score=97.03 Aligned_cols=107 Identities=19% Similarity=0.185 Sum_probs=47.9
Q ss_pred CCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCC
Q 039403 37 FSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPS 115 (249)
Q Consensus 37 ~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~ 115 (249)
++.+++|++|++.++. ..++ .+..+++|+.|++++|. . ..++.....+++|+.|+++++. ++.+. .+.. +++
T Consensus 44 l~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~--i-~~i~~~~~~~~~L~~L~l~~N~-i~~l~-~~~~-l~~ 116 (198)
T d1m9la_ 44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL--I-KKIENLDAVADTLEELWISYNQ-IASLS-GIEK-LVN 116 (198)
T ss_dssp HHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEE--E-CSCSSHHHHHHHCCEEECSEEE-CCCHH-HHHH-HHH
T ss_pred HhcccccceeECcccCCCCcc-cccCCccccChhhcccc--c-cccccccccccccccccccccc-ccccc-cccc-ccc
Confidence 4444444444433322 3232 23444555555555442 1 2222222233345555554433 33322 2333 455
Q ss_pred ccEEEEEcccCCCC-CcccccCCCCCceEEeecccc
Q 039403 116 LIQLSLSNTELMED-PMPMLERLPRLQVLKLKRNSY 150 (249)
Q Consensus 116 L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~ 150 (249)
|+.|++++|.++.. ....+..+++|+.|++.+|++
T Consensus 117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred ccccccccchhccccccccccCCCccceeecCCCcc
Confidence 66666666655421 113455666666666666554
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.1e-11 Score=102.77 Aligned_cols=61 Identities=28% Similarity=0.272 Sum_probs=40.9
Q ss_pred CCCcccEEEeccCCccc-----ceeccCc-ccccccceeeccCcCcC----CCccccccCcCccEEEccCCc
Q 039403 162 GFPELKVLHLKSMYWLD-----EWTMGAG-ALPKLESLIVNPCAYLR----KLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 162 ~~~~L~~L~l~~~~~~~-----~~~~~~~-~~~~L~~L~l~~~~~~~----~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.+++|++|++++ +.++ .+...+. ..+.|+.|++++|.++. .+.+.+..+++|++|++++|.
T Consensus 338 ~~~~L~~L~Ls~-N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 408 (460)
T d1z7xw1 338 QNRFLLELQISN-NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408 (460)
T ss_dssp HCSSCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred cccchhhhheee-ecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCc
Confidence 345788888887 4554 2233332 35668888888888754 244556677888888888886
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=7e-09 Score=73.35 Aligned_cols=106 Identities=19% Similarity=0.065 Sum_probs=74.0
Q ss_pred CCCccEEEEEcccCCCCCcccccCCCCCceEEeeccc-cCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccc
Q 039403 113 PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS-YLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKL 190 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L 190 (249)
+...+.++.+++.+. ..|..+..+++++.|++.++. +.. ..+.. +..+++|+.|++++ +.++.++. .+..+++|
T Consensus 7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~-i~~~~-f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L 82 (156)
T d2ifga3 7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQH-LELRD-LRGLGELRNLTIVK-SGLRFVAPDAFHFTPRL 82 (156)
T ss_dssp CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCE-ECGGG-SCSCCCCSEEECCS-SCCCEECTTGGGSCSCC
T ss_pred cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccc-cCchh-hccccccCcceeec-cccCCcccccccccccc
Confidence 334556666666665 456677777888888887654 433 32445 77788888888888 67787754 46678888
Q ss_pred cceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 191 ESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 191 ~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.|+|++|.+. .+|........+++|++++|+
T Consensus 83 ~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 83 SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNP 114 (156)
T ss_dssp CEEECCSSCCS-CCCSTTTCSCCCCEEECCSSC
T ss_pred cceeccCCCCc-ccChhhhccccccccccCCCc
Confidence 88888888865 566554455578888888875
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=6.5e-09 Score=73.52 Aligned_cols=93 Identities=22% Similarity=0.100 Sum_probs=46.0
Q ss_pred CCcchhcCCCcccCeEEEecCccccccch-hhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCC
Q 039403 53 SCTPDILGRLPSVQTLRISGNLSCYHSGV-SKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDP 130 (249)
Q Consensus 53 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~ 130 (249)
...|..+..+++|++|+++++. ....+ +..|..+++|+.|+++++. ++.+.. +|.. +++|+.|++++|+++ ..
T Consensus 21 ~~~p~~l~~l~~l~~L~l~~n~--~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~-l~~L~~L~Ls~N~l~-~l 95 (156)
T d2ifga3 21 LDSLHHLPGAENLTELYIENQQ--HLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHF-TPRLSRLNLSFNALE-SL 95 (156)
T ss_dssp CTTTTTSCSCSCCSEEECCSCS--SCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGS-CSCCCEEECCSSCCS-CC
T ss_pred ccCcccccCccccCeeecCCCc--cccccCchhhccccccCcceeeccc-cCCcccccccc-cccccceeccCCCCc-cc
Confidence 3455555556666666665442 22333 2345555555555555555 555443 3444 555555555555554 23
Q ss_pred cccccCCCCCceEEeecccc
Q 039403 131 MPMLERLPRLQVLKLKRNSY 150 (249)
Q Consensus 131 ~~~~~~l~~L~~L~l~~~~~ 150 (249)
+..+.....++.|++++|.+
T Consensus 96 ~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 96 SWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp CSTTTCSCCCCEEECCSSCC
T ss_pred ChhhhccccccccccCCCcc
Confidence 32222223455555555443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=3.5e-08 Score=81.09 Aligned_cols=117 Identities=19% Similarity=0.022 Sum_probs=79.6
Q ss_pred CCCccEEEEEcccCCCCCccc----ccCCCCCceEEeeccccCCce---eeeeCCCCCCcccEEEeccCCccc-----ce
Q 039403 113 PPSLIQLSLSNTELMEDPMPM----LERLPRLQVLKLKRNSYLGRK---LACAGSGGFPELKVLHLKSMYWLD-----EW 180 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~-----~~ 180 (249)
...|+.++++.+.++...... +..+++|++|++++|.+.+.. +........+.|++|++++| .++ .+
T Consensus 311 ~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l 389 (460)
T d1z7xw1 311 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSL 389 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHH
T ss_pred ccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHH
Confidence 457999999998876543333 345678999999999876432 11120234678999999995 665 24
Q ss_pred eccCcccccccceeeccCcCcCC----Cccccc-cCcCccEEEccCCc--HHHHHhh
Q 039403 181 TMGAGALPKLESLIVNPCAYLRK----LPEELW-CIKSLRKLDLHWPQ--TELRQRL 230 (249)
Q Consensus 181 ~~~~~~~~~L~~L~l~~~~~~~~----l~~~l~-~l~~L~~l~l~~~~--~~~~~~~ 230 (249)
...+..++.|++|++++|+++.. +.+.+. ....|+.++++++. ++..+.+
T Consensus 390 ~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l 446 (460)
T d1z7xw1 390 AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446 (460)
T ss_dssp HHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred HHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence 44556779999999999997642 223333 23479999999986 4444444
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=4.7e-07 Score=64.05 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=19.6
Q ss_pred CCCcccCeEEEecCcccccc--chhhhhcCCCCCcEEEEecCC
Q 039403 60 GRLPSVQTLRISGNLSCYHS--GVSKSLCELHKLECLKLVNES 100 (249)
Q Consensus 60 ~~l~~L~~L~l~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~ 100 (249)
..+++|++|++++|. ... .++..+..+++|+.|+++++.
T Consensus 62 ~~~~~L~~L~Ls~N~--i~~l~~~~~~~~~l~~L~~L~Ls~N~ 102 (162)
T d1koha1 62 ENIPELLSLNLSNNR--LYRLDDMSSIVQKAPNLKILNLSGNE 102 (162)
T ss_dssp HHCTTCCCCCCCSSC--CCCCSGGGTHHHHSTTCCCCCCTTSC
T ss_pred HhCCCCCEeeCCCcc--ccCCchhHHHHhhCCcccccccccCc
Confidence 456667777777764 221 223334444555555544433
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.53 E-value=8.9e-06 Score=57.51 Aligned_cols=112 Identities=12% Similarity=0.127 Sum_probs=62.6
Q ss_pred CCCccEEEEEcc-cCCCC----CcccccCCCCCceEEeeccccCCce---eeeeCCCCCCcccEEEeccCCccc-----c
Q 039403 113 PPSLIQLSLSNT-ELMED----PMPMLERLPRLQVLKLKRNSYLGRK---LACAGSGGFPELKVLHLKSMYWLD-----E 179 (249)
Q Consensus 113 ~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~-----~ 179 (249)
.++|+.|+++++ .++.. +...+...+.|+.|++++|.+.... +... +...+.|++|++++ +.++ .
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~-L~~n~~L~~L~L~~-n~i~~~g~~~ 91 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIEL-IETSPSLRVLNVES-NFLTPELLAR 91 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHH-HHHCSSCCEEECCS-SBCCHHHHHH
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhh-hhhcccccceeeeh-hhcchHHHHH
Confidence 345566666543 23321 2233455566777777666654322 0112 23456677777777 3554 2
Q ss_pred eeccCcccccccceeeccCcCcC-------CCccccccCcCccEEEccCCcHHH
Q 039403 180 WTMGAGALPKLESLIVNPCAYLR-------KLPEELWCIKSLRKLDLHWPQTEL 226 (249)
Q Consensus 180 ~~~~~~~~~~L~~L~l~~~~~~~-------~l~~~l~~l~~L~~l~l~~~~~~~ 226 (249)
+...+...+.|++|++++|.... .+...+...+.|+.++++++....
T Consensus 92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~~~ 145 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 145 (167)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCchH
Confidence 33344556678888887765321 244556667888999998876443
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=6.4e-06 Score=57.98 Aligned_cols=81 Identities=22% Similarity=0.171 Sum_probs=39.6
Q ss_pred CCCCCceEEeeccccCCce-eeeeCCCCCCcccEEEeccCCcccceecc-CcccccccceeeccCcCcCCCc-------c
Q 039403 136 RLPRLQVLKLKRNSYLGRK-LACAGSGGFPELKVLHLKSMYWLDEWTMG-AGALPKLESLIVNPCAYLRKLP-------E 206 (249)
Q Consensus 136 ~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~l~-------~ 206 (249)
.+++|+.|++++|.++.-. +... +..+++|+.|++++ |.+++++.. ......|+.+++++|++..... .
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~-~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~ 140 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSI-VQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA 140 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTH-HHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred hCCCCCEeeCCCccccCCchhHHH-HhhCCccccccccc-CccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence 3455555555555544311 0111 23455666666666 555544431 1133456777777776554322 1
Q ss_pred ccccCcCccEEE
Q 039403 207 ELWCIKSLRKLD 218 (249)
Q Consensus 207 ~l~~l~~L~~l~ 218 (249)
.+..+|+|+.||
T Consensus 141 i~~~~P~L~~LD 152 (162)
T d1koha1 141 IRERFPKLLRLD 152 (162)
T ss_dssp HHTTSTTCCEET
T ss_pred HHHHCCCCCEEC
Confidence 234566666664
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.27 E-value=4e-05 Score=54.03 Aligned_cols=109 Identities=13% Similarity=0.073 Sum_probs=53.8
Q ss_pred CCcccCeEEEecCcccccc----chhhhhcCCCCCcEEEEecCCCceeeee-----cCCCCCCCccEEEEEcccCCCCC-
Q 039403 61 RLPSVQTLRISGNLSCYHS----GVSKSLCELHKLECLKLVNESKLSRMVL-----SEYQFPPSLIQLSLSNTELMEDP- 130 (249)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~L~~l~l-----~~~~~~~~L~~L~l~~~~~~~~~- 130 (249)
+.++|++|+++++.. ... .+...+...++|+.|+++++. +..-.. .+.. .+.|+.|++++|.+++..
T Consensus 13 n~~~L~~L~L~~~~~-i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~-n~~L~~L~L~~n~i~~~g~ 89 (167)
T d1pgva_ 13 DDTDLKEVNINNMKR-VSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIET-SPSLRVLNVESNFLTPELL 89 (167)
T ss_dssp TCSSCCEEECTTCCS-SCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHH-CSSCCEEECCSSBCCHHHH
T ss_pred CCCCCcEEEeCCCCC-CCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhh-cccccceeeehhhcchHHH
Confidence 345556666654320 111 123344455556666665533 221111 2333 556777777777665422
Q ss_pred ---cccccCCCCCceEEeeccccCCc---e---eeeeCCCCCCcccEEEecc
Q 039403 131 ---MPMLERLPRLQVLKLKRNSYLGR---K---LACAGSGGFPELKVLHLKS 173 (249)
Q Consensus 131 ---~~~~~~l~~L~~L~l~~~~~~~~---~---~~~~~~~~~~~L~~L~l~~ 173 (249)
...+...+.|++|++.++....- . +... +...++|+.|+++.
T Consensus 90 ~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~-L~~n~sL~~l~l~~ 140 (167)
T d1pgva_ 90 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISF 140 (167)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCC
T ss_pred HHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHH-HHhCCCccEeeCcC
Confidence 23455666777777766543211 0 1122 33456777777765
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.86 E-value=6.7e-05 Score=52.68 Aligned_cols=90 Identities=14% Similarity=0.074 Sum_probs=50.3
Q ss_pred ccCCCCCceEEeeccccCCcee---eeeCCCCCCcccEEEeccCCccc-----ceeccCcccccccceeec--cCcCcC-
Q 039403 134 LERLPRLQVLKLKRNSYLGRKL---ACAGSGGFPELKVLHLKSMYWLD-----EWTMGAGALPKLESLIVN--PCAYLR- 202 (249)
Q Consensus 134 ~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~--~~~~~~- 202 (249)
+...++|++|++++|.+..+.. ... +...+.++.+++.+| .++ .+...+...+.|+.+.|. +|.+..
T Consensus 42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~-l~~~~~l~~l~l~~~-~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~ 119 (166)
T d1io0a_ 42 LKTNTYVKKFSIVGTRSNDPVAFALAEM-LKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 119 (166)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHH-HHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HhcCCccCeeeccCCcccHHHHHHHHHH-Hhhcccchhhhhccc-cccchhHHHHHHHHHhCccccEEeeccCCCcCcHH
Confidence 3455666666666665543320 112 334566777777663 333 233445566777765554 444432
Q ss_pred ---CCccccccCcCccEEEccCCcHH
Q 039403 203 ---KLPEELWCIKSLRKLDLHWPQTE 225 (249)
Q Consensus 203 ---~l~~~l~~l~~L~~l~l~~~~~~ 225 (249)
.+.+.+...+.|+.++++++...
T Consensus 120 ~~~~La~~L~~n~~L~~L~l~~~~~~ 145 (166)
T d1io0a_ 120 VEMEIANMLEKNTTLLKFGYHFTQQG 145 (166)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence 24455667888888888887643
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.40 E-value=0.0002 Score=50.15 Aligned_cols=86 Identities=17% Similarity=0.043 Sum_probs=44.3
Q ss_pred CCCccEEEEEcccCCCCCc----ccccCCCCCceEEeeccccCCce---eeeeCCCCCCcccEEEeccC-Cccc-----c
Q 039403 113 PPSLIQLSLSNTELMEDPM----PMLERLPRLQVLKLKRNSYLGRK---LACAGSGGFPELKVLHLKSM-YWLD-----E 179 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~-~~~~-----~ 179 (249)
.++|+.|++++|.++.... ..+...+.++.+++.++.+..+. +... +...++|+.+++..+ +.++ .
T Consensus 45 n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~-l~~~~~L~~l~L~l~~n~i~~~~~~~ 123 (166)
T d1io0a_ 45 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQPLGNNVEME 123 (166)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHH-HHhCccccEEeeccCCCcCcHHHHHH
Confidence 4455555555555443211 22344556666666666554332 1123 445666776666532 2343 2
Q ss_pred eeccCcccccccceeeccCc
Q 039403 180 WTMGAGALPKLESLIVNPCA 199 (249)
Q Consensus 180 ~~~~~~~~~~L~~L~l~~~~ 199 (249)
+...+...+.|+.|++..+.
T Consensus 124 La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 124 IANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCCCcCEEeCcCCC
Confidence 33444466777777776654
|