Citrus Sinensis ID: 039405

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MTIRFPVVAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSLSAN
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHccccccccEEEEccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEcccccEEEEEEEEHcccHHHHHHHHHHHHHHcccccccccEccccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MTIRFPVVAHAKNILRQSKLFatrgtsmskdvpkGYLAVYVGesqkkrfvipasllsqpSFQELLSKAEdefgfnhpmggltipcredTFINLTSSLSAN
Flexible Loop (DISEMBL)
mtirfpvvahaknilrqsklfatrgtsmskdvpKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSLSAN
Low Complexity Region (SEG)
MTIRFPVVAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSLSAN
Disordered region (IsUnstruct)
****FPVVAHAKNILRQSKLFATRGT***KDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINL*******
Disordered Region (DISOPRED)
*TIR***VAHA************************YLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSLS**
Disordered Region (DISEMBL)
MTIRFPVVAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSLSAN
Disordered Region (DISPRO)
*TIRFPVVAHAKNILRQSKLFA******SKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTIRFPVVAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSLSAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
P33079	93	Auxin-induced protein 10A	no	no	0.84	0.903	0.576	4e-25
P33080	92	Auxin-induced protein X10	no	no	0.83	0.902	0.571	4e-24
P33081	82	Auxin-induced protein 15A	no	no	0.79	0.963	0.65	9e-24
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.81	0.880	0.642	1e-23
P33083	90	Auxin-induced protein 6B	no	no	0.83	0.922	0.583	1e-22
P33082	82	Auxin-induced protein X15	no	no	0.79	0.963	0.6	2e-22

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 69/85 (81%), Gaps = 1/85 (1%)

Query: 14 ILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFG 73
          I+R++  + T+  S   DVPKGY AVYVG+ + +RF IP S L++PSFQELLS+AE+EFG
Sbjct: 8  IVRRTSFYTTQAASKRVDVPKGYAAVYVGD-KMRRFTIPVSYLNEPSFQELLSQAEEEFG 66

Query: 74 FNHPMGGLTIPCREDTFINLTSSLS 98
          ++HPMGGLTIPC+E+ F+N+T+ L+
Sbjct: 67 YDHPMGGLTIPCKEEEFLNVTAHLN 91

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/84 (57%), Positives = 70/84 (83%), Gaps = 1/84 (1%)

Query: 15 LRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGF 74
          +R++ + A + +S S +VPKGYL VYVG+ + +RF+IP S L+QPSFQ+LL++AE+EFG+
Sbjct: 8  IRKTSIAANQASSKSVEVPKGYLVVYVGD-KMRRFLIPVSYLNQPSFQDLLNQAEEEFGY 66

Query: 75 NHPMGGLTIPCREDTFINLTSSLS 98
          +HPMGGLTIPC+ED F+ +TS L+
Sbjct: 67 DHPMGGLTIPCKEDEFLTVTSHLN 90

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 63/80 (78%), Gaps = 1/80 (1%)

Query: 19 KLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPM 78
          +L   R  S + D PKGYLAVYVGE + KRFVIP S L+QPSFQ+LLS+AE+EFG++HPM
Sbjct: 4  RLPGIRKASKAADAPKGYLAVYVGE-KLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPM 62

Query: 79 GGLTIPCREDTFINLTSSLS 98
          GGLTIPC ED F  +TS L+
Sbjct: 63 GGLTIPCSEDVFQCITSCLN 82

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/84 (64%), Positives = 65/84 (77%), Gaps = 3/84 (3%)

Query: 19  KLFATRGTSMSK--DVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNH 76
           K  + R  + SK  D PKGYLAVYVGE+ K RFVIP S L+QP FQ+LLS+AE+EFG++H
Sbjct: 10  KTLSARNEASSKVLDAPKGYLAVYVGENMK-RFVIPVSHLNQPLFQDLLSQAEEEFGYDH 68

Query: 77  PMGGLTIPCREDTFINLTSSLSAN 100
           PMGGLTIPC ED F ++TS LSA 
Sbjct: 69  PMGGLTIPCSEDLFQHITSCLSAQ 92

Vigna radiata var. radiata (taxid: 3916)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 67/84 (79%), Gaps = 1/84 (1%)

Query: 15 LRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGF 74
          +R++   A + +S + DV KGYLAVYVGE + +RFVIP S L++PSFQ+LLS+AE+EFG+
Sbjct: 8  IRKASFSANQASSKAVDVEKGYLAVYVGE-KMRRFVIPVSYLNKPSFQDLLSQAEEEFGY 66

Query: 75 NHPMGGLTIPCREDTFINLTSSLS 98
          +HP GGLTIPC ED F ++TS L+
Sbjct: 67 HHPNGGLTIPCSEDVFQHITSFLN 90

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 62/80 (77%), Gaps = 1/80 (1%)

Query: 19 KLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPM 78
          +L   R  S + D PKGYLAVYVGE + KRFVIP S ++QPSFQ+LL++AE+EFG++HPM
Sbjct: 4  RLPGIRKASNAVDAPKGYLAVYVGE-KMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPM 62

Query: 79 GGLTIPCREDTFINLTSSLS 98
          GGLTIPC E+ F  +T  L+
Sbjct: 63 GGLTIPCSEEVFQRITCCLN 82

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
388490922	100	unknown [Lotus japonicus]	0.97	0.97	0.670	6e-31
356517873	100	PREDICTED: auxin-induced protein 10A5-li	0.97	0.97	0.659	6e-31
356508118	106	PREDICTED: auxin-induced protein 10A5-li	0.97	0.915	0.649	2e-30
224103279	93	SAUR family protein [Populus trichocarpa	0.89	0.956	0.683	4e-30
351727258	95	uncharacterized protein LOC100306459 [Gl	0.92	0.968	0.680	5e-30
224080528	99	SAUR family protein [Populus trichocarpa	0.95	0.959	0.663	8e-30
224080530	99	SAUR family protein [Populus trichocarpa	0.88	0.888	0.704	1e-29
224103287	98	SAUR family protein [Populus trichocarpa	0.96	0.979	0.663	2e-29
356509541	95	PREDICTED: indole-3-acetic acid-induced	0.92	0.968	0.670	3e-29
224080524	96	SAUR family protein [Populus trichocarpa	0.94	0.979	0.632	3e-29

>gi|388490922|gb|AFK33527.1| unknown [Lotus japonicus]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 73/97 (75%)

Query: 1  MTIRFPVVAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPS 60
          M IR      AK ILR S LFA +  + S DVPKGY AVYVGES+KKRFVIP SLL+QPS
Sbjct: 1  MAIRLSSALSAKRILRGSSLFANQAAATSLDVPKGYFAVYVGESEKKRFVIPVSLLNQPS 60

Query: 61 FQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSL 97
          FQELLS AE+EFGF+HPMGGL IPC ED F+ + S L
Sbjct: 61 FQELLSAAEEEFGFSHPMGGLIIPCTEDIFVEVASGL 97

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517873|ref|XP_003527610.1| PREDICTED: auxin-induced protein 10A5-like [Glycine max]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 75/97 (77%)

Query: 1  MTIRFPVVAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPS 60
          M IR P +  AK ILR+S LFA    + S DVPKG+ AVYVGE +KKRFVIP S L+QPS
Sbjct: 1  MAIRLPSILSAKYILRRSNLFANHAATTSLDVPKGHFAVYVGEGEKKRFVIPVSYLNQPS 60

Query: 61 FQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSL 97
          FQELLS AE+EFGF+HPMGGL IPC E+ F+N+TS L
Sbjct: 61 FQELLSIAEEEFGFSHPMGGLIIPCTEEIFLNITSGL 97

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508118|ref|XP_003522807.1| PREDICTED: auxin-induced protein 10A5-like [Glycine max]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 75/97 (77%)

Query: 1  MTIRFPVVAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPS 60
          M IR P V  AK ILR+S LFA    + S DVPKG+ AVYVGE +K+R+VIP S L+QPS
Sbjct: 1  MAIRLPSVLSAKYILRRSNLFANHAATTSLDVPKGHFAVYVGEGEKRRYVIPVSYLNQPS 60

Query: 61 FQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSL 97
          FQELLS AE+EFGF+HPMGGL IPC E+ F+N+TS L
Sbjct: 61 FQELLSIAEEEFGFSHPMGGLIIPCTEENFLNITSGL 97

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103279|ref|XP_002312994.1| SAUR family protein [Populus trichocarpa] gi|222849402|gb|EEE86949.1| SAUR family protein [Populus trichocarpa]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 76/98 (77%), Gaps = 9/98 (9%)

Query: 1  MTIRFPVVAHAK-NILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQP 59
          M IR P +   K NILR        G+S +KDV KGY+AVYVGE +KKRFVIP S L+QP
Sbjct: 2  MAIRLPRILQVKQNILR--------GSSAAKDVRKGYIAVYVGEEEKKRFVIPVSYLNQP 53

Query: 60 SFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSL 97
          SFQ+LLSKAE+EFGF HPMGGLTIPCRED FI+LTSSL
Sbjct: 54 SFQDLLSKAEEEFGFEHPMGGLTIPCREDIFIDLTSSL 91

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727258|ref|NP_001235363.1| uncharacterized protein LOC100306459 [Glycine max] gi|255628609|gb|ACU14649.1| unknown [Glycine max]

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 66/97 (68%), Positives = 74/97 (76%), Gaps = 5/97 (5%)

Query: 1  MTIRFPVVAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPS 60
          M IR P    A++ILR+S   AT     S DVPKGY AVYVGE +KKRFVIP SLL+QPS
Sbjct: 2  MAIRLPSALSARHILRRSNAAAT-----SLDVPKGYFAVYVGEGEKKRFVIPVSLLNQPS 56

Query: 61 FQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSL 97
          FQELLS AE+EFGF HPMGGLTIPC ED F+N+TS L
Sbjct: 57 FQELLSIAEEEFGFTHPMGGLTIPCTEDIFVNITSGL 93

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080528|ref|XP_002306151.1| SAUR family protein [Populus trichocarpa] gi|222849115|gb|EEE86662.1| SAUR family protein [Populus trichocarpa]

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 77/95 (81%)

Query: 4  RFPVVAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQE 63
          R    A AK ILR+S   A++  S S DVPKG+LAVY+GE +KKRFV+P S L++PSFQ+
Sbjct: 3  RHLAAALAKQILRRSVWNASKPASRSLDVPKGFLAVYIGEREKKRFVVPVSYLNEPSFQD 62

Query: 64 LLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSLS 98
          LL+KAE+EFGFNHPMGGLTIPCRED FI++ SSLS
Sbjct: 63 LLTKAEEEFGFNHPMGGLTIPCREDKFIDVLSSLS 97

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080530|ref|XP_002306152.1| SAUR family protein [Populus trichocarpa] gi|222849116|gb|EEE86663.1| SAUR family protein [Populus trichocarpa]

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 72/88 (81%)

Query: 11 AKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAED 70
          AK IL +S     +  S S DVPKG+LAVYVGE  KKRFV+P S L++PSFQ+LLSKAE+
Sbjct: 10 AKQILCRSVWITNKSASRSSDVPKGFLAVYVGEMDKKRFVVPVSYLNEPSFQDLLSKAEE 69

Query: 71 EFGFNHPMGGLTIPCREDTFINLTSSLS 98
          EFGFNHPMGGLTIPCREDTFI++ SSLS
Sbjct: 70 EFGFNHPMGGLTIPCREDTFIDILSSLS 97

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103287|ref|XP_002312996.1| SAUR family protein [Populus trichocarpa] gi|222849404|gb|EEE86951.1| SAUR family protein [Populus trichocarpa]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/98 (66%), Positives = 80/98 (81%), Gaps = 2/98 (2%)

Query: 1  MTIRFPVVAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPS 60
          M IR P +A  K  LR+S   A + +S   DVPKG+LAVYVGE++KKRFV+P S L+QPS
Sbjct: 1  MAIRLPGLA--KQSLRRSFSTANKASSKYLDVPKGFLAVYVGETEKKRFVVPVSYLNQPS 58

Query: 61 FQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSLS 98
          FQ+LLSKAEDEFGF+HPMGGLTIPC E+TF+++TSSLS
Sbjct: 59 FQDLLSKAEDEFGFDHPMGGLTIPCAEETFLHVTSSLS 96

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509541|ref|XP_003523506.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Glycine max]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 75/97 (77%), Gaps = 5/97 (5%)

Query: 1  MTIRFPVVAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPS 60
          M IR P V  AK+I R+S   AT     S DVPKG+ AVYVGE +KKRFVIP S L+QPS
Sbjct: 1  MAIRLPCVLSAKHIFRRSNAAAT-----SLDVPKGHFAVYVGEGEKKRFVIPVSYLNQPS 55

Query: 61 FQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSL 97
          FQELLS AE+EFGF+HPMGGLTIPC ED F+N+TS+L
Sbjct: 56 FQELLSIAEEEFGFSHPMGGLTIPCTEDIFLNITSAL 92

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080524|ref|XP_002306150.1| SAUR family protein [Populus trichocarpa] gi|222849114|gb|EEE86661.1| SAUR family protein [Populus trichocarpa]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 76/98 (77%), Gaps = 4/98 (4%)

Query: 1  MTIRFPVVAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPS 60
          M I    + +AK ILR+S L A + T    +VPKGY AVYVGESQKKRF +P S L+QPS
Sbjct: 1  MAILLKGIMNAKQILRRSNLLANQAT----EVPKGYFAVYVGESQKKRFTVPISFLNQPS 56

Query: 61 FQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSLS 98
          FQELL KAE+EFG++HPMGGLT+PCREDTFI++ S L+
Sbjct: 57 FQELLRKAEEEFGYSHPMGGLTLPCREDTFIDIISGLN 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2141772	99	AT4G38840 "AT4G38840" [Arabido	0.95	0.959	0.656	5.6e-29
TAIR|locus:2161573	90	SAUR22 "AT5G18050" [Arabidopsi	0.89	0.988	0.633	1.9e-26
TAIR|locus:2161538	90	SAUR19 "AT5G18010" [Arabidopsi	0.89	0.988	0.633	3.2e-26
TAIR|locus:2172299	90	SAUR24 "AT5G18080" [Arabidopsi	0.89	0.988	0.622	3.2e-26
TAIR|locus:2161543	91	SAUR20 "AT5G18020" [Arabidopsi	0.87	0.956	0.625	5.2e-26
TAIR|locus:2161558	88	AT5G18030 "AT5G18030" [Arabido	0.87	0.988	0.633	1.8e-25
TAIR|locus:2161518	90	SAUR23 "AT5G18060" [Arabidopsi	0.89	0.988	0.611	2.9e-25
TAIR|locus:4515103510	89	AT4G38825 "AT4G38825" [Arabido	0.84	0.943	0.616	9.7e-25
TAIR|locus:2047037	86	AT2G21200 "AT2G21200" [Arabido	0.86	1.0	0.6	1.1e-23
TAIR|locus:2116895	105	AT4G34810 "AT4G34810" [Arabido	0.93	0.885	0.571	1.4e-23

TAIR|locus:2141772 AT4G38840 "AT4G38840" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 63/96 (65%), Positives = 75/96 (78%)

Query:     1 MTIRFP-VVAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQP 59
             M IR P V+  +K ILRQ+KL ++  +S S DVPKGYLAVYVGE   KRFV+P S L QP
Sbjct:     1 MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query:    60 SFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTS 95
             SFQ+LL KAE+EFGF+HPMGGLTIPC E+ FI+L S
Sbjct:    61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLAS 96

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2161573 SAUR22 "AT5G18050" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 57/90 (63%), Positives = 72/90 (80%)

Query:     8 VAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSK 67
             +A  +++L   K+ + R T+     PKG+LAVYVGESQKKR+++P S L+QPSFQ LLSK
Sbjct:     1 MALVRSLLGAKKILS-RSTAAVSAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSK 59

Query:    68 AEDEFGFNHPMGGLTIPCREDTFINLTSSL 97
             +EDEFGF+HPMGGLTIPC EDTFIN+TS L
Sbjct:    60 SEDEFGFDHPMGGLTIPCHEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161538 SAUR19 "AT5G18010" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 57/90 (63%), Positives = 71/90 (78%)

Query:     8 VAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSK 67
             +A  +++L   K+ + R T+     PKG+LAVYVGESQKKR+++P S LSQPSFQ LLSK
Sbjct:     1 MAFVRSLLGAKKILS-RSTAAGSAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSK 59

Query:    68 AEDEFGFNHPMGGLTIPCREDTFINLTSSL 97
             +E+EFGF HPMGGLTIPC EDTFIN+TS L
Sbjct:    60 SEEEFGFAHPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2172299 SAUR24 "AT5G18080" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 56/90 (62%), Positives = 71/90 (78%)

Query:     8 VAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSK 67
             +A  +++L   K+ + R T      PKG+LAVYVGESQKKR+++P S L+QPSFQ LLSK
Sbjct:     1 MAFVRSLLGAKKILS-RSTGAGSAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSK 59

Query:    68 AEDEFGFNHPMGGLTIPCREDTFINLTSSL 97
             +E+EFGF+HPMGGLTIPC EDTFIN+TS L
Sbjct:    60 SEEEFGFDHPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161543 SAUR20 "AT5G18020" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 55/88 (62%), Positives = 72/88 (81%)

Query:     8 VAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSK 67
             +A  +++L   K+ + R T+ +   PKG+LAVYVGESQKKR+++P S L+QPSFQ LLSK
Sbjct:     1 MAFVRSLLGAKKILS-RSTTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSK 59

Query:    68 AEDEFGFNHPMGGLTIPCREDTFINLTS 95
             +E+EFGF+HPMGGLTIPC EDTFIN+TS
Sbjct:    60 SEEEFGFDHPMGGLTIPCPEDTFINVTS 87

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161558 AT5G18030 "AT5G18030" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 57/90 (63%), Positives = 73/90 (81%)

Query:     8 VAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSK 67
             +A  +++L   K+ + R T+ +   PKG+LAVYVGESQKKR+++P S LSQPSFQ LLSK
Sbjct:     1 MALVRSLLGAKKILS-RSTASA--APKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSK 57

Query:    68 AEDEFGFNHPMGGLTIPCREDTFINLTSSL 97
             +E+EFGF+HPMGGLTIPC EDTFIN+TS L
Sbjct:    58 SEEEFGFDHPMGGLTIPCPEDTFINVTSRL 87

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161518 SAUR23 "AT5G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 55/90 (61%), Positives = 72/90 (80%)

Query:     8 VAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSK 67
             +A  +++L   K+ +    ++S   PKG+LAVYVGESQKKR+++P S L+QPSFQ LLSK
Sbjct:     1 MALVRSLLVAKKILSRSAAAVSAP-PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSK 59

Query:    68 AEDEFGFNHPMGGLTIPCREDTFINLTSSL 97
             +E+EFGF+HPMGGLTIPC EDTFIN+TS L
Sbjct:    60 SEEEFGFDHPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:4515103510 AT4G38825 "AT4G38825" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 53/86 (61%), Positives = 67/86 (77%)

Query:    12 KNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDE 71
             + ++   K+F  +G SM+   PKG+LAVYVGESQ KR+++P S L+QPSFQ LLSK+E E
Sbjct:     5 RGLMGAKKIF--QGRSMAASTPKGFLAVYVGESQMKRYIVPVSYLNQPSFQALLSKSEQE 62

Query:    72 FGFNHPMGGLTIPCREDTFINLTSSL 97
             FGF+HPMGGLTIPC  DTFI +TS L
Sbjct:    63 FGFDHPMGGLTIPCPVDTFITVTSQL 88

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2047037 AT2G21200 "AT2G21200" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 54/90 (60%), Positives = 66/90 (73%)

Query:     8 VAHAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSK 67
             +A  + IL   K+     TS +   PKG+LAVYVGESQKKR+++P S L+QPSFQ LLS 
Sbjct:     1 MAMMRGILAARKIL----TSKAASTPKGFLAVYVGESQKKRYMVPVSFLNQPSFQALLST 56

Query:    68 AEDEFGFNHPMGGLTIPCREDTFINLTSSL 97
             AE+EFGF+HPMGGLTIPC EDTF+   S L
Sbjct:    57 AEEEFGFDHPMGGLTIPCPEDTFVAAASQL 86

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2116895 AT4G34810 "AT4G34810" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 56/98 (57%), Positives = 72/98 (73%)

Query:     4 RFPVVAHAKNILRQSKLF-ATRGTSMSKD-VPKGYLAVYVGES---QKKRFVIPASLLSQ 58
             RF +    K IL+ + L    R +S S D VPKG++AVYVGE    +KKRFV+P S L+ 
Sbjct:     5 RFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNH 64

Query:    59 PSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSS 96
             PSF+E LS+AE+EFGFNHPMGGLTIPCRE+ F++L +S
Sbjct:    65 PSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIAS 102

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P32295	ARG7_VIGRR	No assigned EC number	0.6428	0.81	0.8804	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: SAUR69 SAUR family protein (96 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	100
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	5e-37
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	5e-31
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	5e-25
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	2e-24

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  120 bits (302), Expect = 5e-37
 Identities = 47/101 (46%), Positives = 60/101 (59%), Gaps = 5/101 (4%)

Query: 1  MTIRFPVVAHAKNILRQSKLFATRGT---SMSKDVPKGYLAVYVGESQKKRFVIPASLLS 57
          M  R    + AK  +  +    +RG+   S S DVPKG+ AVYVGE   +RFV+P S L+
Sbjct: 1  MASRLKKASSAKKWILSAASGRSRGSSSKSSSADVPKGHFAVYVGEE-TRRFVVPISYLN 59

Query: 58 QPSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSLS 98
           P FQELL +AE+EFGF+   GGLTIPC    F +L   L 
Sbjct: 60 HPLFQELLDRAEEEFGFDQ-DGGLTIPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score =  105 bits (262), Expect = 5e-31
 Identities = 55/98 (56%), Positives = 70/98 (71%), Gaps = 5/98 (5%)

Query: 4   RFPVVAHAKNILRQSKLFATRGTSMSKD--VPKGYLAVYVGES---QKKRFVIPASLLSQ 58
           RF +    K IL+ + L     TS S    VPKG++AVYVGE    +KKRFV+P S L+ 
Sbjct: 5   RFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNH 64

Query: 59  PSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSS 96
           PSF+E LS+AE+EFGFNHPMGGLTIPCRE+ F++L +S
Sbjct: 65  PSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIAS 102

Length = 105

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 89.8 bits (223), Expect = 5e-25
 Identities = 38/67 (56%), Positives = 50/67 (74%), Gaps = 2/67 (2%)

Query: 31  DVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIPCREDTF 90
           DVPKG+  VYVGE+ + R+++P S L+ P FQ LL +AE+EFGF+H M GLTIPC E  F
Sbjct: 39  DVPKGHFPVYVGEN-RSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDM-GLTIPCEEVVF 96

Query: 91  INLTSSL 97
            +LTS +
Sbjct: 97  RSLTSMI 103

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 88.3 bits (218), Expect = 2e-24
 Identities = 48/104 (46%), Positives = 70/104 (67%), Gaps = 8/104 (7%)

Query: 1   MTIRFPVVAHAKNILRQSKLFATRG-------TSMSKDVPKGYLAVYVGES-QKKRFVIP 52
           M +   ++ +AK I +   +    G       T+ S  VPKG++AVYVGE  +KKRFV+P
Sbjct: 1   MGLMRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVP 60

Query: 53  ASLLSQPSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSS 96
            S L+ P F+E L++AE+E GF+H MGGLTIPCRE++F++L +S
Sbjct: 61  ISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS 104

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	85.39
PRK02899	197	adaptor protein; Provisional	83.57

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=3.5e-41  Score=233.48  Aligned_cols=95  Identities=45%  Similarity=0.807  Sum_probs=85.9

Q ss_pred             Ccccchh----hHHHHHHHhhcccccccCC----CCCCCCCCceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhc
Q 039405            1 MTIRFPV----VAHAKNILRQSKLFATRGT----SMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEF   72 (100)
Q Consensus         1 m~~~~~~----~~~~k~~l~r~~s~~~~~~----~~~~~vpkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEf   72 (100)
                      |||+..+    +.++||+||||+|.+++++    ..+.+||+||||||||+ +++||+||++|||||+|++||++|||||
T Consensus         1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~-~~~RfvVp~~~L~hP~F~~LL~~aeeEf   79 (104)
T PLN03090          1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEF   79 (104)
T ss_pred             CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECC-CCEEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence            7777554    5689999999999876543    25779999999999998 8999999999999999999999999999


Q ss_pred             CCccCCCceeeeCcHHHHHHHHHhh
Q 039405           73 GFNHPMGGLTIPCREDTFINLTSSL   97 (100)
Q Consensus        73 G~~~~~G~L~iPC~~~~F~~vl~~l   97 (100)
                      ||+|+ |+|+|||+++.|++++|+|
T Consensus        80 Gf~~~-G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         80 GFDHD-MGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CCCCC-CcEEEeCCHHHHHHHHHHh
Confidence            99998 8999999999999999998

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=1.7e-39  Score=225.15  Aligned_cols=95  Identities=57%  Similarity=1.000  Sum_probs=83.8

Q ss_pred             CcccchhhHH-HHHHHhhcccccccC---CCCCCCCCCceEEEEecCC---CeeEEEEeccCCCcHHHHHHHHhhhhhcC
Q 039405            1 MTIRFPVVAH-AKNILRQSKLFATRG---TSMSKDVPKGYLAVYVGES---QKKRFVIPASLLSQPSFQELLSKAEDEFG   73 (100)
Q Consensus         1 m~~~~~~~~~-~k~~l~r~~s~~~~~---~~~~~~vpkG~~aVyVG~~---e~~RfvVp~~~L~hP~F~~LL~~aeEEfG   73 (100)
                      ||++++.|.. .||+|||++ ..++.   ++.+.+|||||||||||++   +++|||||++|||||.|++||++||||||
T Consensus         1 ~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfG   79 (105)
T PLN03220          1 MGLSRFAISNATKQILKLNS-LANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFG   79 (105)
T ss_pred             CCcchhhhHHHHHHHHHHHh-hcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhC
Confidence            8999999994 599999999 43332   2456799999999999972   58999999999999999999999999999


Q ss_pred             CccCCCceeeeCcHHHHHHHHHh
Q 039405           74 FNHPMGGLTIPCREDTFINLTSS   96 (100)
Q Consensus        74 ~~~~~G~L~iPC~~~~F~~vl~~   96 (100)
                      |+|++|+|+|||+++.|+++++.
T Consensus        80 f~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         80 FNHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             CCCCCCCEEeeCCHHHHHHHHHh
Confidence            99966999999999999999863

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=2.3e-37  Score=212.16  Aligned_cols=96  Identities=46%  Similarity=0.741  Sum_probs=79.9

Q ss_pred             CcccchhhHHHHHHHhhcccccccC----CCCCCCCCCceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCcc
Q 039405            1 MTIRFPVVAHAKNILRQSKLFATRG----TSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNH   76 (100)
Q Consensus         1 m~~~~~~~~~~k~~l~r~~s~~~~~----~~~~~~vpkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~   76 (100)
                      |.-++..+..+|+..+++.+.....    ++...++|+||||||||+ +++||+||++|||||+|++||++|||||||++
T Consensus         1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~-~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~   79 (100)
T PF02519_consen    1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGE-ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQ   79 (100)
T ss_pred             CccHHHHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCc-cceEEEechHHcCchhHHHHHHHHhhhcCcCC
Confidence            5556666666666665554432222    123488999999999998 89999999999999999999999999999999


Q ss_pred             CCCceeeeCcHHHHHHHHHhhc
Q 039405           77 PMGGLTIPCREDTFINLTSSLS   98 (100)
Q Consensus        77 ~~G~L~iPC~~~~F~~vl~~l~   98 (100)
                      + |+|+|||+++.|++++|+|+
T Consensus        80 ~-G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   80 D-GPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             C-CcEEeeCCHHHHHHHHHHhC
Confidence            7 99999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=5.5e-37  Score=213.58  Aligned_cols=97  Identities=48%  Similarity=0.844  Sum_probs=81.8

Q ss_pred             CcccchhhHHHHHHHhhccccccc-------CCCCCCCCCCceEEEEecC-CCeeEEEEeccCCCcHHHHHHHHhhhhhc
Q 039405            1 MTIRFPVVAHAKNILRQSKLFATR-------GTSMSKDVPKGYLAVYVGE-SQKKRFVIPASLLSQPSFQELLSKAEDEF   72 (100)
Q Consensus         1 m~~~~~~~~~~k~~l~r~~s~~~~-------~~~~~~~vpkG~~aVyVG~-~e~~RfvVp~~~L~hP~F~~LL~~aeEEf   72 (100)
                      ||+..+.+..+||++|-.+-..+.       +.+.+.+|||||+|||||+ +|++||+||++|||||+|++||++|||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEf   80 (108)
T PLN03219          1 MGLMRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEEC   80 (108)
T ss_pred             CchHHHHHhhHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHh
Confidence            788888888999988733322111       1234578999999999998 46999999999999999999999999999


Q ss_pred             CCccCCCceeeeCcHHHHHHHHHhh
Q 039405           73 GFNHPMGGLTIPCREDTFINLTSSL   97 (100)
Q Consensus        73 G~~~~~G~L~iPC~~~~F~~vl~~l   97 (100)
                      ||+|++|+|+|||+++.|+++++.-
T Consensus        81 Gf~~~~G~L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         81 GFHHSMGGLTIPCREESFLHLITSH  105 (108)
T ss_pred             CCCCCCCCEEEeCCHHHHHHHHHhh
Confidence            9998669999999999999999864

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=85.39  E-value=1  Score=28.96  Aligned_cols=58  Identities=21%  Similarity=0.190  Sum_probs=41.8

Q ss_pred             EEEecCCCeeEEEEeccCCC-cH--HHHHHHHhhhhhcCCccCCCceeeeCcHHHHHHHHHhhcc
Q 039405           38 AVYVGESQKKRFVIPASLLS-QP--SFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSLSA   99 (100)
Q Consensus        38 aVyVG~~e~~RfvVp~~~L~-hP--~F~~LL~~aeEEfG~~~~~G~L~iPC~~~~F~~vl~~l~~   99 (100)
                      .+=||.   ++|.++.+-|. +|  .|..++........-+ +.|.+-|-++...|++|+..++.
T Consensus         2 ~lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~-~~~~~fiDRdp~~F~~IL~ylr~   62 (94)
T PF02214_consen    2 RLNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDDYDD-DDGEYFIDRDPELFEYILNYLRT   62 (94)
T ss_dssp             EEEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEET-TTTEEEESS-HHHHHHHHHHHHH
T ss_pred             EEEECC---EEEEEcHHHHhhCCCChhhhHHhhccccccCC-ccceEEeccChhhhhHHHHHHhh
Confidence            345774   99999998887 54  6888888653222222 23899999999999999988753

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=83.57  E-value=0.98  Score=34.09  Aligned_cols=24  Identities=25%  Similarity=0.692  Sum_probs=20.8

Q ss_pred             HHHHHHHHhhhhhcCCccCCCceee
Q 039405           59 PSFQELLSKAEDEFGFNHPMGGLTI   83 (100)
Q Consensus        59 P~F~~LL~~aeEEfG~~~~~G~L~i   83 (100)
                      -+|.++|++|..|+||..+ |||+|
T Consensus        39 ~lF~~mm~Ea~~e~~F~~~-~pl~~   62 (197)
T PRK02899         39 QLFRDMMQEANKELGFEAD-GPIAV   62 (197)
T ss_pred             HHHHHHHHHhhhccCcccC-CeEEE
Confidence            3578889999999999987 99976

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00