Citrus Sinensis ID: 039412

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
MKPQLVFFLAFLFLFSLSEGLNPICDTQDHSSTLQVFHVFSPCSPFKPSKPLSWEESVLEMLAKDQARLQFLSSLAVARKSVVPIASGRQITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQGLLGLGRGSLSLLAQTQNLYQSTFSYCLPSFKALSFSGSLRLGPIGQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELCT
cccHHHHHHHHHHHHHHHcccccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEcccccEEEEEEEEcccccEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEcccccccEEEEcccccccccccccEEEEccccccHHHHHHccccccEEEEEccccccccccEEEEcccccccccEEEEcccccccccccEEEEEEEEEEccEEEccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccEEccccccEEEEEEcccEEEEccccEEEEEccccEEEEEEEEccccccccEEEEEcEEEEEEEEEEEccccEEEEEccccc
cccHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHccccEEEEEEEEccccccEEEEEEcccccEEEccccccccccccccccccccEEEcccccHHHHccccccccccccEEEEEEccccEEEEEEEEEEEEccEEccccEEEEEEcccccccccccEcccccccHHHHHHcccccccEEEEEEccccccccccEEEEcccccccccccEEEEccccccEEEEEEEcEEEEccEEEEccHHHHHHccccccEEEEEcccEEEcccHHHHHHHHHHHHHHHcccccccccEEEEEcccccccccEEEEEEccEEccccHHHEEEEEccccEEEEEcccccccccccEEEEEEEEEccEEEEEEcccccEEEEccccc
MKPQLVFFLAFLFLFSlseglnpicdtqdhsstlqvfhvfspcspfkpskplswEESVLEMLAKDQARLQFLSSLAVARKsvvpiasgrqitqspTYIVRAKIGTPAQTLLMAMdtsndaawvpctgcvgcsstvfnsaqsttfknlgcqaaqckqvpnptcgggacafnltygsstiaanlsqdtislatdivpgytfgciqkatgnsvppqgllglgrgsLSLLAQTQNLYQSTfsyclpsfkalsfsgslrlgpigqpkrikytpllknprrsslyYVNLLAIRvgrrvvdippgalqfnpttgagtiidsgtvftrlvapaytAVRDVFRRrvgsnltvtslggfdtcysvpivaPTITLMFSgmnvtlpqdnllihstAGSITCLAMAAAPDNVNSVLNVIANMQQQnhrilydvpnsrlgvaRELCT
MKPQLVFFLAFLFLFSLSEGLNPICDTQDHSSTLQVFHVFSPCSPFKPSKPLSWEESVLEMLAKDQARLQFLSSLAVARKSvvpiasgrqitqsptyiVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQGLLGLGRGSLSLLAQTQNLYQSTFSYCLPSFKALSFSgslrlgpigqpkrikytpllknprrsslYYVNLLAIRVGRRVVDIPPGalqfnpttgagtiidSGTVFTRLVAPAYTAVRDVFRRRVGSnltvtslggfdtcYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNhrilydvpnsrlgvarelct
MKPQlvfflaflflfslSEGLNPICDTQDHSSTLQVFHVfspcspfkpskplsWEESVLEMLAKDQARLQFLSSLAVARKSVVPIASGRQITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQgllglgrgslsllAQTQNLYQSTFSYCLPSFKALSFSGSLRLGPIGQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELCT
****LVFFLAFLFLFSLSEGLNPICDTQDHSSTLQVFHVFSPCSPFKP**PLSWEESVLEMLAKDQARLQFLSSLAVARKSVVPIASGRQITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQGLLGLGRGSLSLLAQTQNLYQSTFSYCLPSFKALSFSGSLRLGPIGQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRL********
**PQLVFFLAFLFLFSLSEG****************FHVF**********************AKD************************QITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFN***ST***NLGCQAAQCK********GGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQGLLGLGRGSLSLLAQTQNLYQSTFSYCLPSFKALSFSGSLRLGPIGQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRV********LGGFDTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELCT
MKPQLVFFLAFLFLFSLSEGLNPICDTQDHSSTLQVFHVFSPCSPFKPSKPLSWEESVLEMLAKDQARLQFLSSLAVARKSVVPIASGRQITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQGLLGLGRGSLSLLAQTQNLYQSTFSYCLPSFKALSFSGSLRLGPIGQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELCT
*KPQLVFFLAFLFLFSLSEGLNPICDTQDHSSTLQVFHVFSPCSPFKPSKPLSWEESVLEMLAKDQARLQFLSSLAVARKSVVPIASGRQITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQGLLGLGRGSLSLLAQTQNLYQSTFSYCLPSFKALSFSGSLRLGPIGQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELCT
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKPQLVFFLAFLFLFSLSEGLNPICDTQDHSSTLQVFHVFSPCSPFKPSKPLSWEESVLEMLAKDQARLQFLSSLAVARKSVVPIASGRQITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQGLLGLGRGSLSLLAQTQNLYQSTFSYCLPSFKALSFSGSLRLGPIGQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELCT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query433 2.2.26 [Sep-21-2011]
Q766C3437 Aspartic proteinase nepen N/A no 0.745 0.739 0.328 9e-41
Q766C2438 Aspartic proteinase nepen N/A no 0.824 0.815 0.303 2e-39
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.771 0.710 0.318 1e-38
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.771 0.668 0.314 3e-36
Q9LZL3453 Aspartic proteinase PCS1 no no 0.739 0.706 0.288 7e-23
Q6XBF8437 Aspartic proteinase CDR1 no no 0.859 0.851 0.254 5e-21
Q3EBM5447 Probable aspartic proteas no no 0.933 0.903 0.251 5e-18
Q9LX20528 Aspartic proteinase-like no no 0.812 0.666 0.234 4e-16
Q9S9K4475 Aspartic proteinase-like no no 0.840 0.766 0.221 2e-15
P22929390 Acid protease OS=Saccharo N/A no 0.667 0.741 0.240 2e-10
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function desciption
 Score =  168 bits (425), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 172/353 (48%), Gaps = 30/353 (8%)

Query: 97  YIVRAKIGTPAQTLLMAMDTSNDAAWV---PCTGCVGCSSTVFNSAQSTTFKNLGCQAAQ 153
           Y++   IGTPAQ     MDT +D  W    PCT C   S+ +FN   S++F  L C +  
Sbjct: 95  YLMNLSIGTPAQPFSAIMDTGSDLIWTQCQPCTQCFNQSTPIFNPQGSSSFSTLPCSSQL 154

Query: 154 CKQVPNPTCGGGACAFNLTYGS-STIAANLSQDTISLATDIVPGYTFGCIQKATG-NSVP 211
           C+ + +PTC    C +   YG  S    ++  +T++  +  +P  TFGC +   G     
Sbjct: 155 CQALSSPTCSNNFCQYTYGYGDGSETQGSMGTETLTFGSVSIPNITFGCGENNQGFGQGN 214

Query: 212 PQGLLGLGRGSLSLLAQTQNLYQSTFSYCLPSFKALSFSGSLRLGPI------GQPKRIK 265
             GL+G+GRG LSL +Q   L  + FSYC+    + S   +L LG +      G P    
Sbjct: 215 GAGLVGMGRGPLSLPSQ---LDVTKFSYCMTPIGS-STPSNLLLGSLANSVTAGSPN--- 267

Query: 266 YTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTG-AGTIIDSGTVFTRLVAP 324
            T L+++ +  + YY+ L  + VG   + I P A   N   G  G IIDSGT  T  V  
Sbjct: 268 -TTLIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNN 326

Query: 325 AYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVP-----IVAPTITLMFSGMNVTLPQDNLL 379
           AY +VR  F  ++   +   S  GFD C+  P     +  PT  + F G ++ LP +N  
Sbjct: 327 AYQSVRQEFISQINLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGGDLELPSENYF 386

Query: 380 IHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELC 432
           I  + G I CLAM ++       +++  N+QQQN  ++YD  NS +  A   C
Sbjct: 387 ISPSNGLI-CLAMGSSSQG----MSIFGNIQQQNMLVVYDTGNSVVSFASAQC 434
Extracellular proteinase found in the pitcher fluid of carnivorous plants. Digest prey for nitrogen uptake.
Nepenthes gracilis (taxid: 150966)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: 1EC: 2
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|P22929|CARP_SACFI Acid protease OS=Saccharomycopsis fibuligera GN=PEP1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
255543963431 Aspartic proteinase nepenthesin-1 precur 0.990 0.995 0.832 0.0
356508308439 PREDICTED: aspartic proteinase nepenthes 0.956 0.943 0.806 0.0
356539555438 PREDICTED: aspartic proteinase nepenthes 0.956 0.945 0.797 0.0
359806832437 uncharacterized protein LOC100819698 pre 0.979 0.970 0.789 0.0
225465837437 PREDICTED: aspartic proteinase nepenthes 0.946 0.938 0.836 0.0
388502484425 unknown [Medicago truncatula] 0.935 0.952 0.822 0.0
225465839451 PREDICTED: aspartic proteinase nepenthes 0.946 0.909 0.809 0.0
118482048425 unknown [Populus trichocarpa] 0.981 1.0 0.782 0.0
224057272425 predicted protein [Populus trichocarpa] 0.972 0.990 0.785 0.0
449449334441 PREDICTED: aspartic proteinase nepenthes 0.933 0.916 0.785 0.0
>gi|255543963|ref|XP_002513044.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] gi|223548055|gb|EEF49547.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/435 (83%), Positives = 394/435 (90%), Gaps = 6/435 (1%)

Query: 1   MKPQLVFFLAFLFLFSLSEG--LNPICDTQDHSSTLQVFHVFSPCSPFKPSKPLSWEESV 58
           MK  L F LAFLF F+L++G  LNP C  QD  S LQVFHV+SPCSPF PSKPL WEESV
Sbjct: 1   MKTHL-FSLAFLF-FTLAQGMHLNPKCGIQDQGSNLQVFHVYSPCSPFWPSKPLKWEESV 58

Query: 59  LEMLAKDQARLQFLSSLAVARKSVVPIASGRQITQSPTYIVRAKIGTPAQTLLMAMDTSN 118
           L+M AKDQARLQFLSSL VARKSVVPIASGRQI QSPTYIVRAKIGTPAQT+L+AMDTSN
Sbjct: 59  LQMQAKDQARLQFLSSL-VARKSVVPIASGRQIVQSPTYIVRAKIGTPAQTMLLAMDTSN 117

Query: 119 DAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYGSSTI 178
           DAAW+PC+GCVGCSSTVFN+ +STTFK +GC+A QCKQVPN  CGG ACAFN+TYGSS+I
Sbjct: 118 DAAWIPCSGCVGCSSTVFNNVKSTTFKTVGCEAPQCKQVPNSKCGGSACAFNMTYGSSSI 177

Query: 179 AANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQGLLGLGRGSLSLLAQTQNLYQSTFS 238
           AANLSQD ++LATD +P YTFGC+ +ATG+S+PPQGLLGLGRG +SLL+QTQNLYQSTFS
Sbjct: 178 AANLSQDVVTLATDSIPSYTFGCLTEATGSSIPPQGLLGLGRGPMSLLSQTQNLYQSTFS 237

Query: 239 YCLPSFKALSFSGSLRLGPIGQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPG 298
           YCLPSF++L+FSGSLRLGP+GQPKRIK TPLLKNPRRSSLYYVNL+AIRVGRRVVDIPP 
Sbjct: 238 YCLPSFRSLNFSGSLRLGPVGQPKRIKTTPLLKNPRRSSLYYVNLMAIRVGRRVVDIPPS 297

Query: 299 ALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIV 358
           AL FNPTTGAGTI DSGTVFTRLVAPAYTAVRD FR+RVG N TVTSLGGFDTCY+ PIV
Sbjct: 298 ALAFNPTTGAGTIFDSGTVFTRLVAPAYTAVRDAFRKRVG-NATVTSLGGFDTCYTSPIV 356

Query: 359 APTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILY 418
           APTIT MFSGMNVTLP DNLLIHSTA SITCLAMAAAPDNVNSVLNVIANMQQQNHRIL+
Sbjct: 357 APTITFMFSGMNVTLPPDNLLIHSTASSITCLAMAAAPDNVNSVLNVIANMQQQNHRILF 416

Query: 419 DVPNSRLGVARELCT 433
           DVPNSRLGVARE CT
Sbjct: 417 DVPNSRLGVAREPCT 431

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356508308|ref|XP_003522900.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356539555|ref|XP_003538263.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|359806832|ref|NP_001241567.1| uncharacterized protein LOC100819698 precursor [Glycine max] gi|255638149|gb|ACU19388.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225465837|ref|XP_002264626.1| PREDICTED: aspartic proteinase nepenthesin-1-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|388502484|gb|AFK39308.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225465839|ref|XP_002264668.1| PREDICTED: aspartic proteinase nepenthesin-1-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|118482048|gb|ABK92955.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224057272|ref|XP_002299201.1| predicted protein [Populus trichocarpa] gi|118483775|gb|ABK93780.1| unknown [Populus trichocarpa] gi|222846459|gb|EEE84006.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449449334|ref|XP_004142420.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
TAIR|locus:2169369455 AT5G07030 [Arabidopsis thalian 0.953 0.907 0.649 2.5e-145
TAIR|locus:2096139425 AT3G54400 [Arabidopsis thalian 0.939 0.957 0.633 1.2e-138
TAIR|locus:2024306449 AT1G09750 [Arabidopsis thalian 0.866 0.835 0.511 1.1e-101
TAIR|locus:2035297485 AT1G01300 [Arabidopsis thalian 0.789 0.705 0.313 1e-43
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.771 0.691 0.313 2.8e-41
TAIR|locus:2183715464 AT5G10760 [Arabidopsis thalian 0.826 0.771 0.305 2.8e-41
TAIR|locus:2095365470 AT3G20015 [Arabidopsis thalian 0.789 0.727 0.294 3.6e-41
TAIR|locus:2183730474 AT5G10770 "AT5G10770" [Arabido 0.842 0.770 0.297 6.8e-40
TAIR|locus:2031225483 AT1G25510 [Arabidopsis thalian 0.822 0.737 0.284 5.5e-38
TAIR|locus:2095042500 ASPG1 "ASPARTIC PROTEASE IN GU 0.785 0.68 0.3 1.5e-37
TAIR|locus:2169369 AT5G07030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1420 (504.9 bits), Expect = 2.5e-145, P = 2.5e-145
 Identities = 274/422 (64%), Positives = 329/422 (77%)

Query:    20 GLN-PICD---TQDHSSTLQVFHVXXXXXXXXXXXXXXWEESVLEMLAKDQARLQFLSSL 75
             GLN P CD   TQD  STL++FH+              WE  VL+ LA+DQARLQ+LSSL
Sbjct:    35 GLNHPNCDLTKTQDQGSTLRIFHIDSPCSPFKSSSPLSWEARVLQTLAQDQARLQYLSSL 94

Query:    76 AVARKSVVPIASGRQITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGC-SST 134
              VA +SVVPIASGRQ+ QS TYIV+A IGTPAQ LL+AMDTS+D AW+PC+GCVGC S+T
Sbjct:    95 -VAGRSVVPIASGRQMLQSTTYIVKALIGTPAQPLLLAMDTSSDVAWIPCSGCVGCPSNT 153

Query:   135 VFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIV 194
              F+ A+ST+FKN+ C A QCKQVPNPTCG  AC+FNLTYGSS+IAANLSQDTI LA D +
Sbjct:   154 AFSPAKSTSFKNVSCSAPQCKQVPNPTCGARACSFNLTYGSSSIAANLSQDTIRLAADPI 213

Query:   195 PGYTFGCIQKATGNSV--PPQXXXXXXXXXXXXXAQTQNLYQSTFSYCLPSFKALSFSGS 252
               +TFGC+ K  G     PPQ             +Q Q++Y+STFSYCLPSF++L+FSGS
Sbjct:   214 KAFTFGCVNKVAGGGTIPPPQGLLGLGRGPLSLMSQAQSIYKSTFSYCLPSFRSLTFSGS 273

Query:   253 LRLGPIGQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTII 312
             LRLGP  QP+R+KYT LL+NPRRSSLYYVNL+AIRVGR+VVD+PP A+ FNP+TGAGTI 
Sbjct:   274 LRLGPTSQPQRVKYTQLLRNPRRSSLYYVNLVAIRVGRKVVDLPPAAIAFNPSTGAGTIF 333

Query:   313 DSGTVFTRLVAPAYTAVRDVFRRRVG-SNLTVTSLGGFDTCYSVPIVAPTITLMFSGMNV 371
             DSGTV+TRL  P Y AVR+ FR+RV  +   VTSLGGFDTCYS  +  PTIT MF G+N+
Sbjct:   334 DSGTVYTRLAKPVYEAVRNEFRKRVKPTTAVVTSLGGFDTCYSGQVKVPTITFMFKGVNM 393

Query:   372 TLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVAREL 431
             T+P DNL++HSTAGS +CLAMAAAP+NVNSV+NVIA+MQQQNHR+L DVPN RLG+ARE 
Sbjct:   394 TMPADNLMLHSTAGSTSCLAMAAAPENVNSVVNVIASMQQQNHRVLIDVPNGRLGLARER 453

Query:   432 CT 433
             C+
Sbjct:   454 CS 455
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0005618 "cell wall" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
TAIR|locus:2096139 AT3G54400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024306 AT1G09750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183715 AT5G10760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095365 AT3G20015 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183730 AT5G10770 "AT5G10770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691
3rd Layer3.4.23.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_I7028
SubName- Full=Putative uncharacterized protein; (425 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 2e-70
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 1e-58
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 5e-40
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 2e-31
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 8e-26
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 3e-14
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 1e-13
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 3e-10
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 6e-10
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 8e-08
PTZ00013450 PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisiona 3e-07
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 6e-07
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 7e-07
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 2e-06
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 2e-06
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 2e-06
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 3e-06
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 7e-06
cd05487326 cd05487, renin_like, Renin stimulates production o 3e-05
PTZ00147453 PTZ00147, PTZ00147, plasmepsin-1; Provisional 2e-04
cd06098317 cd06098, phytepsin, Phytepsin, a plant homolog of 0.002
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information 
 Score =  224 bits (573), Expect = 2e-70
 Identities = 122/344 (35%), Positives = 162/344 (47%), Gaps = 54/344 (15%)

Query: 97  YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQ 156
           Y+V   +GTPA+   + +DT +D  WV C  C                            
Sbjct: 2   YVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC---------------------------- 33

Query: 157 VPNPTCGGGACAFNLTYG-SSTIAANLSQDTISLA-TDIVPGYTFGCIQKATGNSVPPQG 214
                     C + ++YG  S    +L+ DT++L  +D+VPG+ FGC     G      G
Sbjct: 34  ----------CLYQVSYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHDNEGLFGGAAG 83

Query: 215 LLGLGRGSLSLLAQTQNLYQSTFSYCLPSFKALSFSGSLRLG-PIGQPKRIKYTPLLKNP 273
           LLGLGRG LSL +QT + Y   FSYCLP  ++ S SG L  G     P    +TP+L NP
Sbjct: 84  LLGLGRGKLSLPSQTASSYGGVFSYCLPD-RSSSSSGYLSFGAAASVPAGASFTPMLSNP 142

Query: 274 RRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVF 333
           R  + YYV L  I VG R + IPP +         G IIDSGTV TRL   AY A+RD F
Sbjct: 143 RVPTFYYVGLTGISVGGRRLPIPPAS-----FGAGGVIIDSGTVITRLPPSAYAALRDAF 197

Query: 334 RRRVGSNLTVTSLGGFDTCYS----VPIVAPTITLMFS-GMNVTLPQDNLLIHSTAGSIT 388
           R  + +          DTCY       +  PT++L F  G +V L    +L      S  
Sbjct: 198 RAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQV 257

Query: 389 CLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELC 432
           CLA A   D  +  L++I N+QQQ  R++YDV   R+G A   C
Sbjct: 258 CLAFAGTSD--DGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 299
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|140051 PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>gnl|CDD|140176 PTZ00147, PTZ00147, plasmepsin-1; Provisional Back     alignment and domain information
>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 433
PLN03146431 aspartyl protease family protein; Provisional 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.97
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.93
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.91
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 98.14
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 97.27
PF1365090 Asp_protease_2: Aspartyl protease 96.66
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 96.12
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.96
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 95.08
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 95.06
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 94.7
COG3577215 Predicted aspartyl protease [General function pred 93.46
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 92.11
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 90.89
PF12384177 Peptidase_A2B: Ty3 transposon peptidase; InterPro: 89.8
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 88.48
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 86.83
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 86.41
PF1365090 Asp_protease_2: Aspartyl protease 84.76
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 81.39
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 81.3
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.7e-72  Score=559.45  Aligned_cols=394  Identities=26%  Similarity=0.509  Sum_probs=325.8

Q ss_pred             CCCCCceEEEEecccCCCCCCCCCCCCChHHHHHHHHHHhHHHHHhhhhhhcccceeeecccCccccCCccEEEEEEeCC
Q 039412           26 DTQDHSSTLQVFHVFSPCSPFKPSKPLSWEESVLEMLAKDQARLQFLSSLAVARKSVVPIASGRQITQSPTYIVRAKIGT  105 (433)
Q Consensus        26 ~~~~~~~~l~l~hr~s~~s~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~p~~~~~~~~~~~~Y~~~i~iGt  105 (433)
                      +++.++++++|+||++||+|+.++.. ++.++++++++|+++|.+++.++..   ...|+..+ ...++++|+++|.|||
T Consensus        19 ~~~~~~~~~~l~h~~~~~sp~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~~~~~-~~~~~~~Y~v~i~iGT   93 (431)
T PLN03146         19 EAPKGGFTVDLIHRDSPKSPFYNPSE-TPSQRLRNAFRRSISRVNHFRPTDA---SPNDPQSD-LISNGGEYLMNISIGT   93 (431)
T ss_pred             cccCCceEEEEEeCCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHHHHhhccc---cCCccccC-cccCCccEEEEEEcCC
Confidence            34667899999999999999876654 6789999999999999999865421   22344443 3345789999999999


Q ss_pred             CCceEEEEEecCCCceeeeCCCCCCCCC--CC-CCCCCCCccccccCCCcccCCCCCC-CCC-CCCceeEEecCCCc-eE
Q 039412          106 PAQTLLMAMDTSNDAAWVPCTGCVGCSS--TV-FNSAQSTTFKNLGCQAAQCKQVPNP-TCG-GGACAFNLTYGSST-IA  179 (433)
Q Consensus       106 P~q~~~v~vDTGSs~~wv~~~~C~~C~~--~~-y~~~~Sst~~~~~c~~~~C~~~~~~-~C~-~~~~~~~~~Y~~g~-~~  179 (433)
                      |||++.|++||||+++||+|.+|..|..  ++ |||++|+||+.++|+++.|...... .|. ++.|.|.+.|++|+ +.
T Consensus        94 Ppq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~Ygdgs~~~  173 (431)
T PLN03146         94 PPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYSYGDGSFTK  173 (431)
T ss_pred             CCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEEeCCCCcee
Confidence            9999999999999999999999999953  37 9999999999999999999877654 476 45699999999976 57


Q ss_pred             EeEEEEEEEecC-----cccCceEEEeeeccCCCCC-CCCeEeecCCCCCchhhhhccccCCceEEecCCCCC-CCCcce
Q 039412          180 ANLSQDTISLAT-----DIVPGYTFGCIQKATGNSV-PPQGLLGLGRGSLSLLAQTQNLYQSTFSYCLPSFKA-LSFSGS  252 (433)
Q Consensus       180 G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~-~~~GilGLg~~~~s~~~q~~~i~~~~Fs~~l~~~~~-~~~~G~  252 (433)
                      |.+++|+|+|++     ..++++.|||++...+.+. ..+||||||++..|+++|++....++|||||.+..+ ....|.
T Consensus       174 G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~~~~~~~g~  253 (431)
T PLN03146        174 GNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLSSDSNGTSK  253 (431)
T ss_pred             eEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCCCCCCCcce
Confidence            999999999987     3588999999998876553 589999999999999999876555699999976422 234799


Q ss_pred             EEecCCC-CC-CCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEEccccceeeechHHHHHHH
Q 039412          253 LRLGPIG-QP-KRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVR  330 (433)
Q Consensus       253 l~fGg~d-~~-~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l~  330 (433)
                      |+||+.. +. +.+.|+|++.+.. +.+|.|+|++|+||++.+.++...+.  ..+.+.+||||||++++||+++|++|+
T Consensus       254 l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiDSGTt~t~Lp~~~y~~l~  330 (431)
T PLN03146        254 INFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELE  330 (431)
T ss_pred             EEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccc--cCCCCcEEEeCCccceecCHHHHHHHH
Confidence            9999965 33 4589999986422 57999999999999999988766553  234568999999999999999999999


Q ss_pred             HHHHHHhcCCccccCCCCccCCCCCC--CCCceEEEEEeCcEEEeCCCCeEEEecCCCeEEEEEEecCCCCCCceeEech
Q 039412          331 DVFRRRVGSNLTVTSLGGFDTCYSVP--IVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIAN  408 (433)
Q Consensus       331 ~~l~~~~~~~~~~~~~~~~~~C~~~~--~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~~~ilG~  408 (433)
                      ++|.++++..........+.+|+...  ..+|+|+|+|+|+++.|++++|+++... +..|+++....     +.||||+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~~~~~~~~~~~-~~~Cl~~~~~~-----~~~IlG~  404 (431)
T PLN03146        331 SAVEEAIGGERVSDPQGLLSLCYSSTSDIKLPIITAHFTGADVKLQPLNTFVKVSE-DLVCFAMIPTS-----SIAIFGN  404 (431)
T ss_pred             HHHHHHhccccCCCCCCCCCccccCCCCCCCCeEEEEECCCeeecCcceeEEEcCC-CcEEEEEecCC-----CceEECe
Confidence            99999987543233333468999742  4689999999999999999999998755 56899987542     2599999


Q ss_pred             hhhceeEEEEECCCCEEEEecCCCC
Q 039412          409 MQQQNHRILYDVPNSRLGVARELCT  433 (433)
Q Consensus       409 ~fl~~~y~vfD~~~~riGfa~~~C~  433 (433)
                      .|||++|++||++++|||||+++|+
T Consensus       405 ~~q~~~~vvyDl~~~~igFa~~~C~  429 (431)
T PLN03146        405 LAQMNFLVGYDLESKTVSFKPTDCT  429 (431)
T ss_pred             eeEeeEEEEEECCCCEEeeecCCcC
Confidence            9999999999999999999999995

>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>COG3577 Predicted aspartyl protease [General function prediction only] Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 1e-06
3vla_A413 Crystal Structure Of Edgp Length = 413 1e-06
1am5_A324 The Crystal Structure And Proposed Amino Acid Seque 5e-05
2jxr_A329 Structure Of Yeast Proteinase A Length = 329 5e-05
1g0v_A329 The Structure Of Proteinase A Complexed With A Ia3 8e-05
1dp5_A329 The Structure Of Proteinase A Complexed With A Ia3 8e-05
1htr_B329 Crystal And Molecular Structures Of Human Progastri 1e-04
2rmp_A361 Rmp-Pepstatin A Complex Length = 361 3e-04
1b5f_A239 Native Cardosin A From Cynara Cardunculus L. Length 4e-04
1ls5_A328 Crystal Structure Of Plasmepsin Iv From P. Falcipar 7e-04
4aa9_A320 Camel Chymosin At 1.6a Resolution Length = 320 7e-04
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure 
Iteration: 1

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 24/192 (12%)
Query: 262 KRIKYTPLLKNPRRSSL----------YYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTI 311
           K + YTPLL NP  +S           Y++ + +I++  ++V +    L  +     GT 
Sbjct: 210 KTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTK 269
Query: 312 IDSGTVFTRLVAPAYTAVRDVF-RRRVGSNLT-VTSLGGFDTCYSVPIV--------APT 361
           I +   +T L    Y AV + F +     N+T V S+  F  C+S   +         P+
Sbjct: 270 ISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPS 329
Query: 362 ITLMFSGMNV--TLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYD 419
           I L+    +V  T+   N +++    ++ CL +     N+ + + VI   Q +++ + +D
Sbjct: 330 IDLVLQSESVVWTITGSNSMVY-INDNVVCLGVVDGGSNLRTSI-VIGGHQLEDNLVQFD 387
Query: 420 VPNSRLGVAREL 431
           +  SR+G +  L
Sbjct: 388 LATSRVGFSGTL 399
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of A Pepsin From Atlantic Cod (Gadus Morhua) Length = 324 Back     alignment and structure
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A Length = 329 Back     alignment and structure
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant, Mvv Length = 329 Back     alignment and structure
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant Inhibitor Length = 329 Back     alignment and structure
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329 Back     alignment and structure
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex Length = 361 Back     alignment and structure
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L. Length = 239 Back     alignment and structure
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In Complex With Pepstatin A Length = 328 Back     alignment and structure
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution Length = 320 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 2e-74
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 1e-71
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 9e-66
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 5e-25
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 2e-24
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 2e-23
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 1e-22
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 2e-22
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 2e-22
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 4e-22
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 7e-22
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 5e-21
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 5e-21
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 5e-21
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 1e-20
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 2e-20
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 2e-20
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 2e-20
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 3e-20
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 5e-20
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 2e-19
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 3e-19
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 3e-19
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 3e-19
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 4e-19
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 8e-19
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 2e-18
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 4e-18
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 1e-17
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 4e-17
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 9e-17
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 2e-16
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 6e-12
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  237 bits (606), Expect = 2e-74
 Identities = 72/399 (18%), Positives = 139/399 (34%), Gaps = 48/399 (12%)

Query: 72  LSSLAVARKSVVPIASGRQITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGC 131
           ++        V+P+ +      +  +    +  TP   + + +D + +  WV C      
Sbjct: 1   VTPTKPINLVVLPVQND---GSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSS 57

Query: 132 SS---TVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYG--SSTIAANLSQDT 186
            +      +S Q +      C    C     P C    C    T      T    L +D 
Sbjct: 58  KTYQAPFCHSTQCSRANTHQC--LSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDV 115

Query: 187 ISLAT-----------DIVPGYTFGCIQKATGNSVPPQ---GLLGLGRGSLSLLAQT--Q 230
           +++               VP + F C          P+   G+ GLG   +SL  Q    
Sbjct: 116 LAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASH 175

Query: 231 NLYQSTFSYCLPSFKALSFSGSLRLGPIGQP----------KRIKYTPLLKNPRRSSLYY 280
              Q  F+ CL  +   +  G++  G                 + +TPL    +    Y 
Sbjct: 176 FGLQRQFTTCLSRYP--TSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQ--GEYN 231

Query: 281 VNLLAIRVG-RRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGS 339
           V + +IR+    V  +   +     +T  GT+I + T    L    Y A   VF +++  
Sbjct: 232 VRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPK 291

Query: 340 NLTVTSLGGFDTCYSVPIVA--PTITLMFS---GMNVTLPQDNLLIHSTAGSITCLAMAA 394
              V S+  F  C++   +   P++ L+     G    +  ++L++ +  G +TCL +  
Sbjct: 292 QAQVKSVAPFGLCFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPG-VTCLGVMN 350

Query: 395 APDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELCT 433
                      +   Q + + +++D+  SR+G +     
Sbjct: 351 GGMQ-PRAEITLGARQLEENLVVFDLARSRVGFSTSSLH 388
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.9
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.75
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 95.24
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 94.42
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 94.17
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 92.0
2hs1_A99 HIV-1 protease; ultra-high resolution active site 88.68
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 87.76
3ec0_A99 Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1 86.64
3liy_A116 Protease; hydrolase, hydrolase-hydrolase inhibitor 82.77
2hah_A116 Protease, retropepsin; retroviral, aspartyl, hydro 80.07
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=3.8e-62  Score=485.84  Aligned_cols=334  Identities=23%  Similarity=0.444  Sum_probs=279.8

Q ss_pred             cceeeecccCccccCCccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCCCCCCCCCCCCCCCccccccCCCcccCCCC
Q 039412           79 RKSVVPIASGRQITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVP  158 (433)
Q Consensus        79 ~~~~~p~~~~~~~~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~~C~~~~y~~~~Sst~~~~~c~~~~C~~~~  158 (433)
                      ..+.+|++.+   ..+++|+++|.||||||++.|+|||||+++||+|.+|          .+|+||+.++|.++.|....
T Consensus         7 ~~~~~pv~~d---~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c----------~~Sst~~~v~C~s~~C~~~~   73 (413)
T 3vla_A            7 SALVVPVKKD---ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN----------YVSSTYRPVRCRTSQCSLSG   73 (413)
T ss_dssp             SEEEEEEEEC---TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS----------CCCTTCEECBTTSHHHHHTT
T ss_pred             ccEEEEeeec---CCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC----------CCCCCcCccCCCcccccccc
Confidence            3477899865   3588999999999999999999999999999999875          47999999999999997654


Q ss_pred             C-----------CCCCCCCceeEEecC-C-CceEEeEEEEEEEecC---------cccCceEEEeeecc--CCCCCCCCe
Q 039412          159 N-----------PTCGGGACAFNLTYG-S-STIAANLSQDTISLAT---------DIVPGYTFGCIQKA--TGNSVPPQG  214 (433)
Q Consensus       159 ~-----------~~C~~~~~~~~~~Y~-~-g~~~G~~~~D~v~ig~---------~~~~~~~fg~~~~~--~~~~~~~~G  214 (433)
                      .           ..|.++.|.|.+.|+ + +.+.|++++|+|+|++         ..++++.|||++.+  .+.+..++|
T Consensus        74 ~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~~~~dG  153 (413)
T 3vla_A           74 SIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVG  153 (413)
T ss_dssp             CCEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSCTTCCE
T ss_pred             cCCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCccccccc
Confidence            2           245666799999995 6 6778999999999972         57889999999986  345668999


Q ss_pred             EeecCCCCCchhhhh---ccccCCceEEecCCCCCCCCcceEEecCCCC--------CCC-eeeeeCccCCCC-------
Q 039412          215 LLGLGRGSLSLLAQT---QNLYQSTFSYCLPSFKALSFSGSLRLGPIGQ--------PKR-IKYTPLLKNPRR-------  275 (433)
Q Consensus       215 ilGLg~~~~s~~~q~---~~i~~~~Fs~~l~~~~~~~~~G~l~fGg~d~--------~~~-l~~~p~~~~~~~-------  275 (433)
                      |||||++.+|++.|+   +.+ +++||+||.+.  ....|+|+||++|.        .++ ++|+||+.++..       
T Consensus       154 IlGLg~~~lSl~sql~~~~~i-~~~FS~cL~~~--~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~  230 (413)
T 3vla_A          154 MAGLGRTRIALPSQFASAFSF-KRKFAMCLSGS--TSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQ  230 (413)
T ss_dssp             EEECSSSSSSHHHHHHHHHTC-CSEEEEECCSC--SSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCT
T ss_pred             ccccCCCCcchHHHHhhhcCC-CceEEEeCCCC--CCCceEEEECCCcccccccccccCCceeEeecccCCccccccccc
Confidence            999999999999885   345 79999999983  35679999999872        467 999999986532       


Q ss_pred             ---CcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEEccccceeeechHHHHHHHHHHHHHhc--CCccccCCCCcc
Q 039412          276 ---SSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVG--SNLTVTSLGGFD  350 (433)
Q Consensus       276 ---~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l~~~l~~~~~--~~~~~~~~~~~~  350 (433)
                         ..+|.|+|++|+||++.+.++++.+.++.++++.+||||||++++||+++|++|+++|.+++.  ..+.......+.
T Consensus       231 ~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~  310 (413)
T 3vla_A          231 GEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFG  310 (413)
T ss_dssp             TCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTCS
T ss_pred             cCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCCc
Confidence               279999999999999999988888877666678999999999999999999999999998875  222222334468


Q ss_pred             CCCCCC--------CCCceEEEEEeC--cEEEeCCCCeEEEecCCCeEEEEEEecCCCCCCceeEechhhhceeEEEEEC
Q 039412          351 TCYSVP--------IVAPTITLMFSG--MNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDV  420 (433)
Q Consensus       351 ~C~~~~--------~~~P~i~f~f~g--~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~  420 (433)
                      .|++..        ..+|+|+|+|+|  ++|+|++++|+++..+ +..|++++..... .++.||||+.|||++|+|||+
T Consensus       311 ~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~-~~~Cl~~~~~~~~-~~~~~IlGd~fl~~~~vvfD~  388 (413)
T 3vla_A          311 ACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIND-NVVCLGVVDGGSN-LRTSIVIGGHQLEDNLVQFDL  388 (413)
T ss_dssp             CEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEET-TEEEECEEEEESS-CSSSEEECHHHHTTEEEEEET
T ss_pred             ceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCC-CcEEEEEEecCCC-cccceeEehhhhcCeEEEEEC
Confidence            999863        278999999998  7999999999998765 5789988775432 124799999999999999999


Q ss_pred             CCCEEEEecC
Q 039412          421 PNSRLGVARE  430 (433)
Q Consensus       421 ~~~riGfa~~  430 (433)
                      +++|||||++
T Consensus       389 ~~~riGfa~~  398 (413)
T 3vla_A          389 ATSRVGFSGT  398 (413)
T ss_dssp             TTTEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            9999999985
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ... Back     alignment and structure
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A* Back     alignment and structure
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 433
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 6e-39
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 4e-33
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 9e-33
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 2e-32
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 2e-30
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 4e-30
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 8e-30
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 2e-29
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 2e-29
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 6e-29
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 1e-28
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 1e-28
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 9e-28
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 4e-27
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 3e-26
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 9e-26
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 9e-26
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 2e-24
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 3e-24
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 6e-24
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 1e-23
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 4e-23
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  142 bits (358), Expect = 6e-39
 Identities = 70/388 (18%), Positives = 128/388 (32%), Gaps = 56/388 (14%)

Query: 82  VVPIASGRQITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQ- 140
           + P+      +    Y +    G       + +D +    W  C G    +    +S   
Sbjct: 4   LAPVTKDPATSL---YTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTC 55

Query: 141 --STTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYGS-STIAANLSQDTISLAT------ 191
             +  +   GC A  C    +        A+     S +  A +LS       T      
Sbjct: 56  LLANAYPAPGCPAPSCG---SDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKP 112

Query: 192 --DIVPGYTFGCIQKATGNSVP--PQGLLGLGRGSLSLLAQTQNLYQSTFSYCLPSFKAL 247
              +  G    C       S+P    G+ GL    L+L AQ  +  +    + L      
Sbjct: 113 VSKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGG 172

Query: 248 SFSGSLRLGPIGQPK---RIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNP 304
                   GP+  P+    + YTPL+     S  +Y++  +I VG   V +P GA     
Sbjct: 173 PGVAIFGGGPVPWPQFTQSMPYTPLVTKG-GSPAHYISARSIVVGDTRVPVPEGA----- 226

Query: 305 TTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSN--------LTVTSLGGFDTCYSVP 356
               G ++ +   +  L    Y  + D F + + +           V ++  F  CY   
Sbjct: 227 LATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTK 286

Query: 357 --------IVAPTITLMF-SGMNVTLPQDNLLIHSTAGSITCLAMAA----APDNVNSVL 403
                      P + L    G + T+   N ++    G+  C+A       A  +  +  
Sbjct: 287 TLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGT-ACVAFVEMKGVAAGDGRAPA 345

Query: 404 NVIANMQQQNHRILYDVPNSRLGVAREL 431
            ++   Q ++  + +D+   RLG +R  
Sbjct: 346 VILGGAQMEDFVLDFDMEKKRLGFSRLP 373
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d2nmza199 Human immunodeficiency virus type 1 protease {Huma 84.52
d4fiva_113 Feline immunodeficiency virus (FIV) protease {Feli 83.19
d3ecga199 Human immunodeficiency virus type 2 (HIV-2) protea 82.33
d2fmba_104 EIAV protease {Equine infectious anemia virus [Tax 82.11
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.3e-58  Score=452.22  Aligned_cols=303  Identities=22%  Similarity=0.356  Sum_probs=251.9

Q ss_pred             eeeecccCccccCCccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCCCC--CCCC-CCCCCCCccccccCCCcccCCC
Q 039412           81 SVVPIASGRQITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGC--SSTV-FNSAQSTTFKNLGCQAAQCKQV  157 (433)
Q Consensus        81 ~~~p~~~~~~~~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~~C--~~~~-y~~~~Sst~~~~~c~~~~C~~~  157 (433)
                      ...||.+.    .+.+|+++|.||||||+++|+|||||+++||+|..|..|  ..++ |||++|+||+..          
T Consensus        46 ~~~~l~n~----~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~----------  111 (370)
T d3psga_          46 GDEPLENY----LDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEAT----------  111 (370)
T ss_dssp             CCCTTGGG----TTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEE----------
T ss_pred             cccccccc----cCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCCCcccccccccCCCcccccccC----------
Confidence            34566542    478999999999999999999999999999999999987  4557 999999999988          


Q ss_pred             CCCCCCCCCceeEEecCCCceEEeEEEEEEEecCcccCceEEEeeeccCCC---CCCCCeEeecCCCCCchh--------
Q 039412          158 PNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGN---SVPPQGLLGLGRGSLSLL--------  226 (433)
Q Consensus       158 ~~~~C~~~~~~~~~~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~---~~~~~GilGLg~~~~s~~--------  226 (433)
                              +|.|.+.|++|++.|.+++|++.+++.+++++.||++....+.   ....+||+|||++..+..        
T Consensus       112 --------~~~~~~~Yg~Gs~~G~~~~d~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~  183 (370)
T d3psga_         112 --------SQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDN  183 (370)
T ss_dssp             --------EEEEEEESSSCEEEEEEEEEEEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHH
T ss_pred             --------CCcEEEEeCCceEEEEEEEEEEeeeceeeeeeEEEEEeeccCceecccccccccccccCcccccCCCchhhh
Confidence                    7999999999999999999999999999999999999987664   347899999998765432        


Q ss_pred             -hhhccccCCceEEecCCCCCCCCcceEEecCCC---CCCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCccc
Q 039412          227 -AQTQNLYQSTFSYCLPSFKALSFSGSLRLGPIG---QPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQF  302 (433)
Q Consensus       227 -~q~~~i~~~~Fs~~l~~~~~~~~~G~l~fGg~d---~~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~  302 (433)
                       .+++.|..++||+|+.+.  ...+|.|+|||+|   +.++++|+|+..    ..+|.|.++++.++++.+...      
T Consensus       184 l~~~~~i~~~~fs~~l~~~--~~~~g~l~~Gg~d~~~~~~~l~~~p~~~----~~~w~v~~~~i~v~g~~~~~~------  251 (370)
T d3psga_         184 LWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWVPVSV----EGYWQITLDSITMDGETIACS------  251 (370)
T ss_dssp             HHHTTCSSSSEEEEEEC-------CEEEEETCCCGGGBSSCCEEEECSE----ETTEEEEECEEESSSSEEECT------
T ss_pred             hhhhcccccceeEEEeecC--CCCCceEecCCcCchhcccceeEEeecc----cceEEEEEeeEEeCCeEEecC------
Confidence             235889999999999883  4557999999999   679999999987    589999999999999877643      


Q ss_pred             CCCCCCceEEccccceeeechHHHHHHHHHHHHHhcCCccccCCCCc-cCCCCCCCCCceEEEEEeCcEEEeCCCCeEEE
Q 039412          303 NPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGF-DTCYSVPIVAPTITLMFSGMNVTLPQDNLLIH  381 (433)
Q Consensus       303 ~~~~~~~~iiDSGt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~C~~~~~~~P~i~f~f~g~~~~l~~~~y~~~  381 (433)
                         .+..+||||||++++||++++++|++++.+..      ...+.+ ++|+.. ..+|+|+|+|+|++++|++++|+++
T Consensus       252 ---~~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~------~~~~~~~~~C~~~-~~~P~l~f~f~g~~~~l~~~~yi~~  321 (370)
T d3psga_         252 ---GGCQAIVDTGTSLLTGPTSAIANIQSDIGASE------NSDGEMVISCSSI-DSLPDIVFTIDGVQYPLSPSAYILQ  321 (370)
T ss_dssp             ---TCEEEEECTTCCSEEEEHHHHHHHHHHTTCEE------CTTCCEECCGGGG-GGCCCEEEEETTEEEEECHHHHEEE
T ss_pred             ---CCccEEEecCCceEeCCHHHHHHHHHHhCCee------ecCCcEEEecccc-CCCceEEEEECCEEEEEChHHeEEE
Confidence               34689999999999999999999877754321      122334 899987 7899999999999999999999997


Q ss_pred             ecCCCeEEEE-EEecCC-CCCCceeEechhhhceeEEEEECCCCEEEEecC
Q 039412          382 STAGSITCLA-MAAAPD-NVNSVLNVIANMQQQNHRILYDVPNSRLGVARE  430 (433)
Q Consensus       382 ~~~~~~~C~~-~~~~~~-~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~  430 (433)
                      ..+   .|+. +..... ...++.||||++|||++|+|||++++||||||+
T Consensus       322 ~~~---~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~  369 (370)
T d3psga_         322 DDD---SCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPV  369 (370)
T ss_dssp             CSS---CEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred             cCC---eEEEEEEEcccCCCCCCcEEECHHhhcCEEEEEECCCCEEEEEec
Confidence            644   5854 544321 122357999999999999999999999999986
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]} Back     information, alignment and structure
>d3ecga1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 2 (HIV-2) protease {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]} Back     information, alignment and structure