Citrus Sinensis ID: 039428
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 335 | ||||||
| 255548449 | 327 | conserved hypothetical protein [Ricinus | 0.970 | 0.993 | 0.692 | 1e-129 | |
| 224130984 | 328 | predicted protein [Populus trichocarpa] | 0.964 | 0.984 | 0.698 | 1e-129 | |
| 225437569 | 327 | PREDICTED: uncharacterized protein LOC10 | 0.967 | 0.990 | 0.662 | 1e-123 | |
| 449469030 | 326 | PREDICTED: uncharacterized protein LOC10 | 0.964 | 0.990 | 0.664 | 1e-122 | |
| 356499903 | 324 | PREDICTED: uncharacterized protein LOC10 | 0.964 | 0.996 | 0.664 | 1e-119 | |
| 357442239 | 327 | hypothetical protein MTR_1g086990 [Medic | 0.970 | 0.993 | 0.649 | 1e-117 | |
| 388504932 | 322 | unknown [Lotus japonicus] | 0.958 | 0.996 | 0.646 | 1e-114 | |
| 217073892 | 327 | unknown [Medicago truncatula] gi|3885090 | 0.946 | 0.969 | 0.649 | 1e-114 | |
| 356534776 | 327 | PREDICTED: uncharacterized protein LOC10 | 0.964 | 0.987 | 0.635 | 1e-112 | |
| 18398204 | 327 | calcium-dependent phosphotriesterase-lik | 0.961 | 0.984 | 0.605 | 1e-106 |
| >gi|255548449|ref|XP_002515281.1| conserved hypothetical protein [Ricinus communis] gi|223545761|gb|EEF47265.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 232/335 (69%), Positives = 282/335 (84%), Gaps = 10/335 (2%)
Query: 1 MALSLCFTKTLLFFFIISAIPIAYIISIELAIAMAKPATHVYQYHSPSFLCETAKWDDVG 60
M LSLC T++LLF FI+SA+PIA IIS+EL+ +P+T V+ YHS FL E AKWDD+
Sbjct: 1 MPLSLCSTRSLLFLFILSALPIAIIISLELS----EPSTPVFHYHSSGFLRECAKWDDLN 56
Query: 61 RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFT 120
RRFLVSFLDGG+G++ VP +YSPGTVLEEV +VK+ D+ GN+++G VDRPRNRL+V
Sbjct: 57 RRFLVSFLDGGIGEIRVPVDYSPGTVLEEVTVVKDADLAGNSSVGFVVDRPRNRLVVVNA 116
Query: 121 DVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKV 180
DV+GNKYSA+AAYDLSTW+RLFLTQLSG S+ K+ ADD+AVDAEGNAYVTDV +SKIWKV
Sbjct: 117 DVIGNKYSAVAAYDLSTWERLFLTQLSGPSDGKAFADDVAVDAEGNAYVTDVKASKIWKV 176
Query: 181 GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEV 240
G +G+ LS+I +PLF KEWYKN+ LNGIVYHPDGFLIVIH +GNL+KID+ K +EV
Sbjct: 177 GNDGKFLSVITNPLFIQKEWYKNLIALNGIVYHPDGFLIVIHTFTGNLYKIDLAK-GDEV 235
Query: 241 KLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRV 300
KLI++ GG SLS GDGL LLSPTK+VVAGN PS RLVESSDGWETA++V KF GP HR+
Sbjct: 236 KLIKVEGG-SLSFGDGLELLSPTKIVVAGN--PSGRLVESSDGWETATLVGKFKGPAHRL 292
Query: 301 ATAATVKDGRVYLSHLLGLGFPNTKKKHLLVEAVF 335
ATAATVKDG+VYL+H++G+G+P KKKH+LVEAVF
Sbjct: 293 ATAATVKDGKVYLNHMIGIGYP--KKKHVLVEAVF 325
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130984|ref|XP_002320973.1| predicted protein [Populus trichocarpa] gi|222861746|gb|EEE99288.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 236/338 (69%), Positives = 276/338 (81%), Gaps = 15/338 (4%)
Query: 1 MALSLCFTKTLLFFFIISAIPIAYIISIELAIAMAKPATHVYQYHSPSFLCETAKWDDVG 60
MA SLC TKTLLF +ISAIPIA+IIS+ELA KP THVY YHS F E+AKWDD+
Sbjct: 1 MAFSLCSTKTLLFLLLISAIPIAFIISMELA----KPPTHVYHYHSSGFFRESAKWDDLN 56
Query: 61 RRFLVSFLDGGVGQVLVPDEYSPG---TVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLV 117
RRFLVSF++GG+G++ VP+++ VL+EV +VK+ D+ GN+++GI VDRPRNRLLV
Sbjct: 57 RRFLVSFMEGGIGEIAVPEDHGSSLEEAVLKEVTVVKDPDLTGNSSLGIVVDRPRNRLLV 116
Query: 118 AFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKI 177
A +DVLGN Y+ALAAYDLSTW RLFLT+L EKS ADD+AVDAEGNAYVTD S+KI
Sbjct: 117 AISDVLGNNYNALAAYDLSTWDRLFLTKLD---NEKSFADDVAVDAEGNAYVTDAKSNKI 173
Query: 178 WKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEE 237
WKVG +G+ +S IR+P F AKEWYKN+ GLNGIVYHPDGFLIVIH SG L+KIDI KE+
Sbjct: 174 WKVGADGKFVSFIRNPHFVAKEWYKNLIGLNGIVYHPDGFLIVIHTFSGMLYKIDIAKED 233
Query: 238 EEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPT 297
EVKLI++ GG SL+ GDGL LLSPTKLVVAGN PS RLVESSD WETASVVAKF GP
Sbjct: 234 HEVKLIKVAGG-SLAFGDGLELLSPTKLVVAGN--PSGRLVESSDRWETASVVAKFKGPA 290
Query: 298 HRVATAATVKDGRVYLSHLLGLGFPNTKKKHLLVEAVF 335
HR+ATAATVKDGRVYL+HLLG+G+P K+KH LVEAVF
Sbjct: 291 HRLATAATVKDGRVYLNHLLGMGYP--KRKHALVEAVF 326
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437569|ref|XP_002276779.1| PREDICTED: uncharacterized protein LOC100252201 isoform 1 [Vitis vinifera] gi|297743981|emb|CBI36951.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/335 (66%), Positives = 272/335 (81%), Gaps = 11/335 (3%)
Query: 1 MALSLCFTKTLLFFFIISAIPIAYIISIELAIAMAKPATHVYQYHSPSFLCETAKWDDVG 60
M LC TK+L FFIISAIP+AYIIS+E A+P+THVY YHS +L E AKWDD+
Sbjct: 1 MVSFLCSTKSLFIFFIISAIPVAYIISVE----RAEPSTHVYHYHSSGWLRECAKWDDLD 56
Query: 61 RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFT 120
RRF+VS +GGV V VPD +SPGT+LEE+ +VKE ++ GNA++GIAVDR RNR+LV
Sbjct: 57 RRFIVSLFEGGVALVEVPDGHSPGTILEEIIVVKEPELAGNASLGIAVDRRRNRVLVVNA 116
Query: 121 DVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKV 180
DV+ N+Y +LAAYD STW+RLFL+QLSG +EKS ADD+AVD EGNAYVTD ++KIWKV
Sbjct: 117 DVMRNRYGSLAAYDRSTWRRLFLSQLSGPGDEKSFADDVAVDEEGNAYVTDAKANKIWKV 176
Query: 181 GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEV 240
GV+G++LSIIRSPLFT KEWYK + GLNG+VYHP+G+L+VIH SGNL KI+I E+EEV
Sbjct: 177 GVDGEILSIIRSPLFTPKEWYKTLVGLNGVVYHPNGYLLVIHTFSGNLLKIEI--EKEEV 234
Query: 241 KLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRV 300
KL+++ GG L GDGL L+SPTKLVVAGN PS RLVESSD WETA+V AK++GP HR+
Sbjct: 235 KLVKV-GGGKLVFGDGLELISPTKLVVAGN--PSGRLVESSDEWETATVTAKYSGPAHRL 291
Query: 301 ATAATVKDGRVYLSHLLGLGFPNTKKKHLLVEAVF 335
ATAATVKDG+VYL+HLLG+G+P +K H LVEAVF
Sbjct: 292 ATAATVKDGKVYLNHLLGMGYP--RKTHALVEAVF 324
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469030|ref|XP_004152224.1| PREDICTED: uncharacterized protein LOC101220240 [Cucumis sativus] gi|449484215|ref|XP_004156819.1| PREDICTED: uncharacterized protein LOC101228903 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/334 (66%), Positives = 273/334 (81%), Gaps = 11/334 (3%)
Query: 3 LSLCFTKTLLFFFIISAIPIAYIISIELAIAMAKPATHVYQYHSPSFLCETAKWDDVGRR 62
++LC T+ L FI+SAIPIA++IS+ELA P +HVY YHS + E AKWDD+GRR
Sbjct: 1 MALCSTRFLFILFILSAIPIAFLISLELA----NPPSHVYYYHSTGYFRECAKWDDLGRR 56
Query: 63 FLVSFLDGG-VGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD 121
FLV F+ GG VGQV VPD+Y+P T+LEEV ++K+ D+ GNA++GI VDRPRNRLLV F D
Sbjct: 57 FLVGFMSGGGVGQVSVPDDYTPETILEEVPVIKDADLQGNASLGIVVDRPRNRLLVVFAD 116
Query: 122 VLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181
+L NKYS LAAYDLS+WKR FLT LSG ++EKS ADD+AVD+EGNAYVTD ++KIWKVG
Sbjct: 117 LLANKYSGLAAYDLSSWKRQFLTHLSGPNDEKSFADDVAVDSEGNAYVTDAKNNKIWKVG 176
Query: 182 VEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVK 241
V+G+ LS I SPLF +K+WYKN+ GLNGIVYHPDG+L+VIH SG+L+KID+ K EEVK
Sbjct: 177 VDGKFLSTINSPLFISKQWYKNLVGLNGIVYHPDGYLLVIHTFSGSLYKIDLVK-GEEVK 235
Query: 242 LIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVA 301
LI + GG SL LGDGL LLSPTKLVVAGN P+ RLVES+DGWETAS+V+ +G HR+A
Sbjct: 236 LINVTGG-SLMLGDGLELLSPTKLVVAGN--PAGRLVESTDGWETASLVSTCSGLKHRLA 292
Query: 302 TAATVKDGRVYLSHLLGLGFPNTKKKHLLVEAVF 335
T+ATVK+GRVYLSH++G+G+P KKKH LVEAVF
Sbjct: 293 TSATVKNGRVYLSHMIGIGYP--KKKHALVEAVF 324
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499903|ref|XP_003518775.1| PREDICTED: uncharacterized protein LOC100805536 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 222/334 (66%), Positives = 267/334 (79%), Gaps = 11/334 (3%)
Query: 3 LSLCFTKTLLFFFIISAIPIAYIISIELAIAMAKPATHVYQYHSPSFLCETAKWDDVGRR 62
++ C K L ++SAIPI I+++E AKPATHVY YHS + E AKWD RR
Sbjct: 1 MAFCSPKFLSLLLLLSAIPIGIIVTLE----RAKPATHVYHYHSNGWFRECAKWDSHNRR 56
Query: 63 FLVSFLDGGVGQVLVPD-EYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD 121
F+VSF +GG+GQVL+P+ +Y LEEV +VKE + GNA++GIA+D PRNR+LV D
Sbjct: 57 FIVSFFEGGLGQVLLPEKDYESSPPLEEVTVVKETHLAGNASLGIAIDAPRNRVLVVNAD 116
Query: 122 VLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181
V+GN+Y ALAAYDLSTW RLFLTQLS S+EKS ADD+AVDAEGNAYVTD +KIWKVG
Sbjct: 117 VIGNRYGALAAYDLSTWNRLFLTQLSAPSDEKSFADDVAVDAEGNAYVTDAKGNKIWKVG 176
Query: 182 VEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVK 241
VEG+L+SIIR+PLFT+KEWYKN+ GLNGIVYHPDGFLIVIH SGNLFKID+ K EEVK
Sbjct: 177 VEGKLISIIRNPLFTSKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDLTK-GEEVK 235
Query: 242 LIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVA 301
+I+L+ G +LS GDGL LLSPTKLVVAGN PS RLVES+DGW TASVV F+GP HR+A
Sbjct: 236 IIKLKEG-TLSFGDGLELLSPTKLVVAGN--PSGRLVESTDGWNTASVVGTFSGPKHRLA 292
Query: 302 TAATVKDGRVYLSHLLGLGFPNTKKKHLLVEAVF 335
TAATVKDG+VYL+H++G+G+P KKKH +VEAVF
Sbjct: 293 TAATVKDGKVYLNHMVGIGYP--KKKHAIVEAVF 324
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357442239|ref|XP_003591397.1| hypothetical protein MTR_1g086990 [Medicago truncatula] gi|355480445|gb|AES61648.1| hypothetical protein MTR_1g086990 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/337 (64%), Positives = 262/337 (77%), Gaps = 12/337 (3%)
Query: 1 MALS-LCFTKTLLFFFIISAIPIAYIISIELAIAMAKPATHVYQYHSPSFLCETAKWDDV 59
MA S LC K L F+++AIPI IIS+E +P+THVY YHS F E AKWD
Sbjct: 1 MACSCLCSPKFLAILFLLTAIPIGIIISLE----RTQPSTHVYHYHSKGFFRECAKWDSD 56
Query: 60 GRRFLVSFLDGGVGQVLVPD-EYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVA 118
RF+ SF +GG+GQ+ VP+ E GTV EE ++KE ++ GNA++G+ +DR RNR+LV
Sbjct: 57 NHRFINSFFEGGIGQISVPEKESEAGTVFEEATVLKETELAGNASLGMTIDRSRNRILVV 116
Query: 119 FTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIW 178
DV GN+YSAL AYDLSTWKRLFLTQLSG S+EK+ ADD+AVDAEGNAYVTDV +SKIW
Sbjct: 117 NADVRGNRYSALVAYDLSTWKRLFLTQLSGPSDEKALADDVAVDAEGNAYVTDVKASKIW 176
Query: 179 KVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEE 238
KVGV G L+SIIR+PLFT KEW+K + GLNGIVYHPDGFLIVIH SGNLFKID+ K E
Sbjct: 177 KVGVGGNLISIIRNPLFTPKEWHKTLVGLNGIVYHPDGFLIVIHTFSGNLFKIDLTK-GE 235
Query: 239 EVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTH 298
EVK+I + GG L GDGL LLSP K+VVAGN PS RLVES DGW TASVVAKF+GP H
Sbjct: 236 EVKIINVVGG-PLYFGDGLELLSPNKVVVAGN--PSGRLVESLDGWNTASVVAKFSGPKH 292
Query: 299 RVATAATVKDGRVYLSHLLGLGFPNTKKKHLLVEAVF 335
R+AT+ATVKDG+VYL+H++G+G+P KKKH +VEAVF
Sbjct: 293 RLATSATVKDGKVYLNHMVGIGYP--KKKHAIVEAVF 327
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388504932|gb|AFK40532.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/334 (64%), Positives = 261/334 (78%), Gaps = 13/334 (3%)
Query: 3 LSLCFTKTLLFFFIISAIPIAYIISIELAIAMAKPATHVYQYHSPSFLCETAKWDDVGRR 62
++L K+L F ++ +IP+ IIS+E A+PATHVY YHS F E AKWD R
Sbjct: 1 MALFSAKSLTFLVLLISIPVGIIISLE----RAQPATHVYHYHSTGFFRECAKWDSDNNR 56
Query: 63 FLVSFLDGGVGQV-LVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD 121
F+VS+ +GGVGQ+ +VP VLEEV +V+E ++ GNA++G+ +DR RNR+LV D
Sbjct: 57 FIVSYFEGGVGQIPVVPA--GGEAVLEEVTVVREPELAGNASLGMVIDRSRNRILVVNAD 114
Query: 122 VLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181
VLGN+Y ALAAYDLSTW RLFLT L+ +EKS ADD+AVDAEGNAYVTDV SKIWKVG
Sbjct: 115 VLGNRYGALAAYDLSTWNRLFLTPLTRTGDEKSFADDVAVDAEGNAYVTDVKGSKIWKVG 174
Query: 182 VEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVK 241
V+G+LLSIIR+PLFT KEWYK FGLNGIVYHPDGFLIVIH SGNLFKID+ K EEVK
Sbjct: 175 VDGELLSIIRNPLFTPKEWYKTFFGLNGIVYHPDGFLIVIHTFSGNLFKIDLAK-GEEVK 233
Query: 242 LIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVA 301
+I++ GG L GDGL LLSP KLVVAG+ PS RLVES+DGW+TASVVA F+GP HR+A
Sbjct: 234 IIKVEGG-PLYFGDGLELLSPNKLVVAGS--PSGRLVESADGWDTASVVATFSGPKHRLA 290
Query: 302 TAATVKDGRVYLSHLLGLGFPNTKKKHLLVEAVF 335
TAATVKDG+VYL+H+LG+G+P KKKH +VEAVF
Sbjct: 291 TAATVKDGKVYLNHMLGMGYP--KKKHAIVEAVF 322
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217073892|gb|ACJ85306.1| unknown [Medicago truncatula] gi|388509062|gb|AFK42597.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/328 (64%), Positives = 256/328 (78%), Gaps = 11/328 (3%)
Query: 9 KTLLFFFIISAIPIAYIISIELAIAMAKPATHVYQYHSPSFLCETAKWDDVGRRFLVSFL 68
K L F+++AIPI IIS+E +P+THVY YHS F E AKWD RF+ SF
Sbjct: 10 KFLAILFLLTAIPIGIIISLE----RTQPSTHVYHYHSKGFFRECAKWDSDNHRFINSFF 65
Query: 69 DGGVGQVLVPD-EYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127
+GG+GQ+ VP+ E GTV EE ++KE ++ GNA++G+ +DR RNR+LV DV GN+Y
Sbjct: 66 EGGIGQISVPEKESEAGTVFEEATVLKETELAGNASLGMTIDRSRNRILVVNADVRGNRY 125
Query: 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLL 187
SAL AYDLSTWKRLFLTQLSG S+EK+ ADD+AVDAEGNAYVTDV +SKIWKVGV G L+
Sbjct: 126 SALVAYDLSTWKRLFLTQLSGPSDEKALADDVAVDAEGNAYVTDVKASKIWKVGVGGNLI 185
Query: 188 SIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRG 247
SIIR+PLFT KEW+K + GLNGIVYHPDGFLIVIH SGNLFKID+ K EEVK+I + G
Sbjct: 186 SIIRNPLFTPKEWHKTLVGLNGIVYHPDGFLIVIHTFSGNLFKIDLTK-GEEVKIINVVG 244
Query: 248 GSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK 307
G L GDGL LLSP K+VVAGN PS RLVES DGW TASVVAKF+GP HR+AT+ATVK
Sbjct: 245 G-PLYFGDGLELLSPNKVVVAGN--PSGRLVESLDGWNTASVVAKFSGPKHRLATSATVK 301
Query: 308 DGRVYLSHLLGLGFPNTKKKHLLVEAVF 335
DG+VYL+H++G+G+P KKK +VEAVF
Sbjct: 302 DGKVYLNHMVGIGYP--KKKPAIVEAVF 327
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534776|ref|XP_003535928.1| PREDICTED: uncharacterized protein LOC100809270 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 214/337 (63%), Positives = 267/337 (79%), Gaps = 14/337 (4%)
Query: 3 LSLCFTKTLLFFFIISAIPIAYIISIELAIAMAKPATHVYQYHSPSFLCETAKWDDVGRR 62
++LC + L ++SAIPI I+++E A+PATHVY YHS + E AKWD RR
Sbjct: 1 MALCSPRFLTLLLLLSAIPIGIIVTLE----RAQPATHVYHYHSSGWFRECAKWDSHHRR 56
Query: 63 FLVSFLDGGVGQVLVPDEYSPGTVLEE----VKLVKEDDVVGNATMGIAVDRPRNRLLVA 118
F+VSF +GG+GQV +P++ S + V +V++ + GNA++GIA+D PRNR+LV
Sbjct: 57 FIVSFFEGGLGQVKLPEKDSESSSSSPPLEEVTVVRDAHLAGNASLGIAIDPPRNRVLVV 116
Query: 119 FTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIW 178
DV+GN+Y ALAAYDLSTW RLFLTQLS S+EKS ADD+AVDAEGNAYVTD+ +KIW
Sbjct: 117 NADVIGNRYGALAAYDLSTWNRLFLTQLSSPSDEKSFADDVAVDAEGNAYVTDIKGNKIW 176
Query: 179 KVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEE 238
KVGVEG+L+SIIR+PLF+AKEWYKN+ GLNGIVYHPDGFLIVIH SGNLFKID+ K E
Sbjct: 177 KVGVEGKLISIIRNPLFSAKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDLTK-GE 235
Query: 239 EVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTH 298
EVK+I+++GG +LS GDGL LLSPTKLVVAGN PS RLVESSDGW TASVV F+GP H
Sbjct: 236 EVKIIKVKGG-TLSFGDGLELLSPTKLVVAGN--PSGRLVESSDGWNTASVVGTFSGPKH 292
Query: 299 RVATAATVKDGRVYLSHLLGLGFPNTKKKHLLVEAVF 335
R+A+AATVK+G+VYL+H++G+G+P KKKH +VEAVF
Sbjct: 293 RLASAATVKEGKVYLNHMVGIGYP--KKKHAIVEAVF 327
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18398204|ref|NP_565392.1| calcium-dependent phosphotriesterase-like protein [Arabidopsis thaliana] gi|4581119|gb|AAD24609.1| expressed protein [Arabidopsis thaliana] gi|21537036|gb|AAM61377.1| unknown [Arabidopsis thaliana] gi|26451541|dbj|BAC42868.1| unknown protein [Arabidopsis thaliana] gi|28973387|gb|AAO64018.1| unknown protein [Arabidopsis thaliana] gi|330251441|gb|AEC06535.1| calcium-dependent phosphotriesterase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/340 (60%), Positives = 258/340 (75%), Gaps = 18/340 (5%)
Query: 1 MALSLCFTK-TLLFFFIISAIPIAYIISIELAIAMAKPATHVYQYHSPSFLCETAKWDDV 59
M+ S C + T F +ISA+PIAY+IS+ELA+ P+THV+ Y S F E AKWDDV
Sbjct: 1 MSPSFCSGRCTAALFLVISAVPIAYLISLELAV----PSTHVFSYQSSGFFRECAKWDDV 56
Query: 60 GRRFLVSFLDGG-VGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVA 118
GRRFLVSF+DGG VG+++ D VLEEV LVK+ D+ GNA++GIA+D RNRLLVA
Sbjct: 57 GRRFLVSFMDGGGVGEIVPKDS---DDVLEEVTLVKDVDLAGNASLGIAIDHVRNRLLVA 113
Query: 119 FTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIW 178
D+LGN+YSALAAYDLSTW+RLFL +LSG+S+EK+ ADD+AVD +GNAYVTD +SKIW
Sbjct: 114 VADLLGNRYSALAAYDLSTWRRLFLAELSGQSKEKTFADDVAVDEQGNAYVTDAKASKIW 173
Query: 179 KVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEE- 237
KV V G+L++ I SPLFT WY N+ LNGIVYHPDGFLIVIH SG L+KID+ +
Sbjct: 174 KVDVNGKLVNTITSPLFTPPGWYNNLVALNGIVYHPDGFLIVIHTFSGYLYKIDLTNGDV 233
Query: 238 -EEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKF-NG 295
+V +I++ GG +L GDGL LLSPTK+VVAG+ S +LVESSDGW TASV F +G
Sbjct: 234 SNQVSVIDVSGG-TLRFGDGLELLSPTKIVVAGS--SSTKLVESSDGWRTASVTGWFSSG 290
Query: 296 PTHRVATAATVKDGRVYLSHLLGLGFPNTKKKHLLVEAVF 335
HRV ++ATVK+GRVYL+H++G G +KKKH+LVEAVF
Sbjct: 291 MVHRVVSSATVKEGRVYLNHIVGFG---SKKKHVLVEAVF 327
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 335 | ||||||
| TAIR|locus:2059934 | 327 | AT2G16760 "AT2G16760" [Arabido | 0.874 | 0.896 | 0.558 | 3.6e-82 | |
| TAIR|locus:2065170 | 330 | AT2G47370 "AT2G47370" [Arabido | 0.877 | 0.890 | 0.537 | 1.3e-77 | |
| TAIR|locus:2148820 | 174 | AT5G28660 "AT5G28660" [Arabido | 0.402 | 0.775 | 0.489 | 1.9e-26 | |
| TAIR|locus:2038751 | 387 | AT2G01410 "AT2G01410" [Arabido | 0.782 | 0.677 | 0.294 | 2.9e-20 |
| TAIR|locus:2059934 AT2G16760 "AT2G16760" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
Identities = 171/306 (55%), Positives = 213/306 (69%)
Query: 34 MAKPATHVYQYHSPSFLCETAKWDDVGRRFLVSFLDGG-VGQVLVPDEYSPGTXXXXXXX 92
+A P+THV+ Y S F E AKWDDVGRRFLVSF+DGG VG+++ D
Sbjct: 31 LAVPSTHVFSYQSSGFFRECAKWDDVGRRFLVSFMDGGGVGEIVPKDS---DDVLEEVTL 87
Query: 93 XXXXXXXGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEE 152
GNA++GIA+D RNRLLVA D+LGN+YSALAAYDLSTW+RLFL +LSG+S+E
Sbjct: 88 VKDVDLAGNASLGIAIDHVRNRLLVAVADLLGNRYSALAAYDLSTWRRLFLAELSGQSKE 147
Query: 153 KSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVY 212
K+ ADD+AVD +GNAYVTD +SKIWKV V G+L++ I SPLFT WY N+ LNGIVY
Sbjct: 148 KTFADDVAVDEQGNAYVTDAKASKIWKVDVNGKLVNTITSPLFTPPGWYNNLVALNGIVY 207
Query: 213 HPDGFLIVIHMCSGNLFKIDIRKEE--EEVKLIEXXXXXXXXXXXXXXXXXPTKLVVAGN 270
HPDGFLIVIH SG L+KID+ + +V +I+ PTK+VVAG+
Sbjct: 208 HPDGFLIVIHTFSGYLYKIDLTNGDVSNQVSVIDVSGGTLRFGDGLELLS-PTKIVVAGS 266
Query: 271 PYPSARLVESSDGWETASVVAKFN-GPTHRVATAATVKDGRVYLSHLLGLGFPNTKKKHL 329
S +LVESSDGW TASV F+ G HRV ++ATVK+GRVYL+H++G G +KKKH+
Sbjct: 267 S--STKLVESSDGWRTASVTGWFSSGMVHRVVSSATVKEGRVYLNHIVGFG---SKKKHV 321
Query: 330 LVEAVF 335
LVEAVF
Sbjct: 322 LVEAVF 327
|
|
| TAIR|locus:2065170 AT2G47370 "AT2G47370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 164/305 (53%), Positives = 205/305 (67%)
Query: 35 AKPATHVYQYHSPSFLCETAKWDDVGRRFLVSFLDGG--VGQVLVPDEYSPGTXXXXXXX 92
A P+THV YHS FL E AKWDDVGRRFLVS++DGG +G+ LVP + S
Sbjct: 33 AVPSTHVISYHSSGFLRECAKWDDVGRRFLVSYMDGGGGIGE-LVPTKDSDDVLKEVTLV 91
Query: 93 XXXXXXXGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEE 152
GN++ G +DR RNRLL+A D+LGN+YSAL AYDLSTW+RLFLT LS S+E
Sbjct: 92 KDVDLA-GNSSNGFVIDRHRNRLLLAVGDLLGNRYSALVAYDLSTWRRLFLTVLSSHSKE 150
Query: 153 KSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVY 212
+ ADD+AVD +GNAYV+D KIW V V G+L+ IRSPLFT WY N LNGIVY
Sbjct: 151 ITYADDVAVDTQGNAYVSDAKGGKIWVVDVNGKLVYTIRSPLFTTPGWYNNFVSLNGIVY 210
Query: 213 HPDGFLIVIHMCSGNLFKIDIRKEEEEVKL-IEXXXXXXXXXXXXXXXXXPTKLVVAGNP 271
HP+GFLIVIH SG L+KID+ + K+ + PTK+VVAG+P
Sbjct: 211 HPEGFLIVIHTFSGFLYKIDVTNGDVSSKVTVIDVSGGSLRFGDGLEFLSPTKIVVAGSP 270
Query: 272 YPSARLVESSDGWETASVVAKFN-GPTHRVATAATVKDGRVYLSHLLGLGFPNTKKKHLL 330
S++LVESSDGW TASV F+ G HR+ ++ATVK+GRVYL+H++G G +KK+H+L
Sbjct: 271 --SSKLVESSDGWRTASVTGWFSSGMVHRLVSSATVKEGRVYLNHIVGFG---SKKRHIL 325
Query: 331 VEAVF 335
VEAVF
Sbjct: 326 VEAVF 330
|
|
| TAIR|locus:2148820 AT5G28660 "AT5G28660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 68/139 (48%), Positives = 87/139 (62%)
Query: 70 GGVGQVLVPDEYSPGTXXXXXXXXXXXXXXGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129
GG+G+ LVP + S N++ G +DR RNRLL+A D+LGN+YSA
Sbjct: 5 GGIGE-LVPTKDSDNVLEEVTLVNDVDLAD-NSSNGFVIDRHRNRLLLAVGDLLGNRYSA 62
Query: 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSI 189
L AYDLSTW+ LFLT LS S + + ADD+AVD +GNAYV+D KIW V V G+L+
Sbjct: 63 LVAYDLSTWRHLFLTVLS--SHKITYADDVAVDTQGNAYVSDAKGGKIWIVDVNGKLVYT 120
Query: 190 IRSPLFTAKEWYKNVFGLN 208
IRSPLFT+ +V G N
Sbjct: 121 IRSPLFTSPVTIIDVSGGN 139
|
|
| TAIR|locus:2038751 AT2G01410 "AT2G01410" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 242 (90.2 bits), Expect = 2.9e-20, P = 2.9e-20
Identities = 85/289 (29%), Positives = 129/289 (44%)
Query: 40 HVYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTXXXXXXXXXXXXXX 99
HV + SP E WD + FLV L + + +S
Sbjct: 40 HVINFRSPGLYPEGLTWDPRDQHFLVGSLHS---RTI----HSVSDAGVIETLISDLDLP 92
Query: 100 GNAT-MGIAVDRPRNRLLVAFTDVLG-NKYSALAAYDL-STWKRLFLT---QLSGKSEE- 152
N+T +G+AVD RLL + +SALA+YDL S +R+FL+ L G E+
Sbjct: 93 ENSTILGLAVDSTNRRLLACIQSLPPLPPFSALASYDLRSGGRRVFLSPLPSLPGDDEDI 152
Query: 153 -KSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV---F--- 205
+ A+D+AVD +GNAYVT+ + IWKV +G +SPLF ++ + F
Sbjct: 153 ARDVANDVAVDFKGNAYVTNSAKNFIWKVDRDGAASIFSKSPLFNSQPVAADADASFRDC 212
Query: 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIEXXXXXXXXXXXXXXXXXPTKL 265
GLNGIVY G+L+V+ +G +FK+D ++ +L+ T +
Sbjct: 213 GLNGIVYISKGYLLVVQSNTGKVFKVD--EDSGNARLVLLNGDLIAADGMTRRRRDGTVM 270
Query: 266 VVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVKD-GRVYL 313
VV+ L++S D W V + + TA TV R+Y+
Sbjct: 271 VVSQK---KLWLLKSQDSWSEGVVYDEIDLDIEGFPTAVTVAGRDRIYV 316
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 335 281 0.00083 115 3 11 22 0.37 34
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 4
No. of states in DFA: 618 (66 KB)
Total size of DFA: 210 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.57u 0.11s 19.68t Elapsed: 00:00:01
Total cpu time: 19.57u 0.11s 19.68t Elapsed: 00:00:01
Start: Sat May 11 01:31:17 2013 End: Sat May 11 01:31:18 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 335 | |||
| pfam08450 | 245 | pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re | 3e-04 |
| >gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 105 GIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW----KRLFLTQLSGKSEEKSTADDIA 160
G+A P + L F D + A YD +R+F G E D +A
Sbjct: 137 GLAWS-PDGKTLY-FADSPTRRIWA-FDYDADGGLISNRRVFADFKDGDGE----PDGMA 189
Query: 161 VDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSP 193
VDAEGN +V K+ + +G+LL I P
Sbjct: 190 VDAEGNVWVARWGGGKVVRYDPDGKLLGEIELP 222
|
This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 335 | |||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.97 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.94 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.88 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.84 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 99.8 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 99.77 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.74 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.7 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 99.68 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 99.63 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.63 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.62 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.59 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.59 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.52 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.48 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.48 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 99.43 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.42 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.41 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.39 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.36 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 99.28 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.27 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.24 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.16 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 99.14 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.14 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 99.1 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 99.09 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 99.09 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.07 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 99.03 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.96 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 98.95 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.94 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 98.91 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 98.9 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 98.88 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.75 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.73 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.73 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 98.66 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.61 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.59 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 98.59 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.56 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.54 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.54 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.54 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 98.46 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.45 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 98.44 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.42 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.42 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.4 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.39 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.38 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.37 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.34 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.33 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.32 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.32 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.31 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.31 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.3 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.27 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.26 | |
| PTZ00420 | 568 | coronin; Provisional | 98.24 | |
| PTZ00421 | 493 | coronin; Provisional | 98.23 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.21 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.21 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 98.19 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 98.18 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.17 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.17 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.16 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.12 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.12 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 98.1 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.09 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.08 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.06 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.05 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 98.03 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 98.03 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 98.01 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.01 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.01 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 98.01 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 98.0 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 97.98 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 97.96 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 97.95 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 97.94 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.93 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.93 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.93 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 97.9 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 97.9 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.87 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 97.86 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.85 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.85 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.83 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 97.83 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 97.82 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 97.81 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.8 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 97.79 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.73 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 97.72 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 97.72 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.72 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.7 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.68 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.67 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 97.65 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 97.64 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.59 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 97.58 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.57 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 97.55 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 97.55 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 97.55 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 97.54 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 97.52 | |
| COG3211 | 616 | PhoX Predicted phosphatase [General function predi | 97.52 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 97.45 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.4 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 97.39 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 97.38 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.36 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.36 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 97.36 | |
| PTZ00421 | 493 | coronin; Provisional | 97.36 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 97.34 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.33 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.31 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 97.28 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 97.27 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 97.21 | |
| PLN02153 | 341 | epithiospecifier protein | 97.2 | |
| PTZ00420 | 568 | coronin; Provisional | 97.18 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 97.13 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 97.11 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 97.11 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.09 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 97.05 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 97.04 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 97.02 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 97.0 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.96 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 96.95 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 96.94 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 96.87 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 96.85 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 96.84 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.83 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 96.83 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 96.83 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 96.82 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 96.81 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 96.8 | |
| COG3211 | 616 | PhoX Predicted phosphatase [General function predi | 96.8 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 96.78 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 96.77 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 96.77 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.71 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 96.66 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 96.66 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 96.64 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 96.64 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 96.54 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 96.54 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 96.51 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.5 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 96.5 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.49 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 96.41 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 96.37 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.36 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 96.3 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 96.27 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.26 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 96.22 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.21 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 96.15 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 96.14 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 96.07 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 96.07 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 95.99 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 95.99 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 95.98 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 95.95 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 95.82 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 95.82 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 95.82 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 95.8 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 95.74 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 95.7 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 95.69 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.68 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 95.67 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 95.66 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 95.61 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.57 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 95.56 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.48 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 95.46 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 95.46 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 95.43 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 95.42 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 95.37 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 95.34 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 95.33 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 95.28 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 95.26 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 95.25 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 95.15 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 95.03 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 94.96 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 94.91 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 94.85 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 94.82 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 94.82 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 94.81 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 94.81 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 94.77 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 94.76 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 94.66 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 94.53 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 94.53 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 94.5 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 94.47 | |
| KOG1215 | 877 | consensus Low-density lipoprotein receptors contai | 94.37 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 94.34 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 94.33 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 94.32 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 94.32 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 94.19 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.18 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 94.07 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 93.99 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 93.9 | |
| PF14339 | 236 | DUF4394: Domain of unknown function (DUF4394) | 93.88 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 93.84 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 93.76 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 93.42 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 93.24 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 93.24 | |
| PLN02193 | 470 | nitrile-specifier protein | 93.23 | |
| PF06739 | 38 | SBBP: Beta-propeller repeat; InterPro: IPR010620 T | 93.23 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 93.18 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 93.11 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 93.09 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 93.08 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 93.04 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 92.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 92.67 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 92.44 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 92.4 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 92.38 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 92.25 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 91.91 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 91.82 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 91.81 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 91.75 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.58 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 91.47 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 91.45 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 91.42 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 91.32 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 91.11 | |
| PF14517 | 229 | Tachylectin: Tachylectin; PDB: 1TL2_A. | 91.11 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 91.03 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 91.03 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 91.0 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 90.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 90.92 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 90.85 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 90.61 | |
| PLN02153 | 341 | epithiospecifier protein | 90.6 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 90.56 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 90.51 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 90.39 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 90.35 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 90.34 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 90.03 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 89.57 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 89.52 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 89.52 | |
| PLN02193 | 470 | nitrile-specifier protein | 89.41 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 89.34 | |
| KOG1215 | 877 | consensus Low-density lipoprotein receptors contai | 89.3 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 88.95 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 88.64 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 88.61 | |
| COG4222 | 391 | Uncharacterized protein conserved in bacteria [Fun | 88.51 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 88.02 | |
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 87.89 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 87.78 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 87.5 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 87.45 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 87.43 | |
| COG4447 | 339 | Uncharacterized protein related to plant photosyst | 86.6 | |
| PF06739 | 38 | SBBP: Beta-propeller repeat; InterPro: IPR010620 T | 86.47 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 86.46 | |
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 86.45 | |
| PF14339 | 236 | DUF4394: Domain of unknown function (DUF4394) | 86.17 | |
| PF14517 | 229 | Tachylectin: Tachylectin; PDB: 1TL2_A. | 86.12 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 86.09 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 85.56 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 85.45 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 85.0 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 84.98 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 84.49 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 84.48 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.42 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 84.39 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 84.27 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 83.93 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 83.06 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 82.88 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 82.64 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 82.37 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 82.21 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 80.7 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 80.56 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 80.31 |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-28 Score=214.69 Aligned_cols=227 Identities=26% Similarity=0.395 Sum_probs=164.1
Q ss_pred ceeeeEEcC-CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDD-VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~-~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
+|||++|++ +|++||++...++|+++++.++. .. .+..+ .|.|++++.+++++|++. . .
T Consensus 1 l~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~-----~~---~~~~~-----~~~G~~~~~~~g~l~v~~--~-----~ 60 (246)
T PF08450_consen 1 LGEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGE-----VE---VIDLP-----GPNGMAFDRPDGRLYVAD--S-----G 60 (246)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTTTE-----EE---EEESS-----SEEEEEEECTTSEEEEEE--T-----T
T ss_pred CCcceEEECCCCEEEEEEcCCCEEEEEECCCCe-----EE---EEecC-----CCceEEEEccCCEEEEEE--c-----C
Confidence 589999998 77888888889999999964333 11 33333 378999994479999964 3 2
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC--------CeEEEEccCCcEEEEecCCccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS--------SKIWKVGVEGQLLSIIRSPLFTAKEW 200 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~--------~~I~~~d~~g~~~~~~~~~~~~~~~~ 200 (335)
.+.++|++++++...........+...|||+++|++|++|++++.. ++|++++++++....+.
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--------- 131 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVAD--------- 131 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEE---------
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEec---------
Confidence 3677799999776444442112147999999999999999998754 78999999966544322
Q ss_pred cccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCce---eEEEE-eccCCcCCCCCCeEEEcCCCcEEEEecCCCeE
Q 039428 201 YKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEE---EVKLI-ELRGGSSLSLGDGLALLSPTKLVVAGNPYPSA 275 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~---~~~~~-~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~ 275 (335)
....||||+++||| .|||+++..++|++++++.... ..+.+ ...+ . ...||||++|++|+||||.+..+++
T Consensus 132 --~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~-~g~pDG~~vD~~G~l~va~~~~~~I 207 (246)
T PF08450_consen 132 --GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG-G-PGYPDGLAVDSDGNLWVADWGGGRI 207 (246)
T ss_dssp --EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS-S-SCEEEEEEEBTTS-EEEEEETTTEE
T ss_pred --CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC-C-CcCCCcceEcCCCCEEEEEcCCCEE
Confidence 23459999999999 8999999999999999975421 22333 3332 1 2459999999999999997766888
Q ss_pred EEEEcCCCcEEEEEeeeecCCCCCcceEEEEe---CCeEEEEe
Q 039428 276 RLVESSDGWETASVVAKFNGPTHRVATAATVK---DGRVYLSH 315 (335)
Q Consensus 276 ~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~---~g~lyV~~ 315 (335)
.+++.. | +++..+..| ...||+++|. .++|||++
T Consensus 208 ~~~~p~-G----~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 208 VVFDPD-G----KLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEETT-S----CEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred EEECCC-c----cEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 877754 3 455566666 3479999994 58899965
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=197.63 Aligned_cols=254 Identities=18% Similarity=0.271 Sum_probs=176.8
Q ss_pred eEEEcCCCcceeeeEEcCCCC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEE
Q 039428 41 VYQYHSPSFLCETAKWDDVGR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAF 119 (335)
Q Consensus 41 ~~~~~~~~~~pegia~d~~g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~ 119 (335)
...+.....+.||+.|+++++ +||+++.+++|+++++.+++ .+ ....|.. .+.+..++. +++|+++
T Consensus 17 ~~~~~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~-----~~---~~~~p~~---~~~~~~~d~-~g~Lv~~- 83 (307)
T COG3386 17 VTLLDKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGK-----KR---VFPSPGG---FSSGALIDA-GGRLIAC- 83 (307)
T ss_pred eeEeecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCc-----eE---EEECCCC---cccceeecC-CCeEEEE-
Confidence 444555677899999999988 66666999999999965454 12 3345553 467888885 7888884
Q ss_pred ecCCCCccceEEEEECCCCeE-EEEeecCCCccCCCCCCceeECCCCcEEEEeCC-----------CCeEEEEccCCcEE
Q 039428 120 TDVLGNKYSALAAYDLSTWKR-LFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-----------SSKIWKVGVEGQLL 187 (335)
Q Consensus 120 ~D~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-----------~~~I~~~d~~g~~~ 187 (335)
+. .+..++++.+.. ....... .+.+.++|||+.+|++|++||++.. .++||+++++|...
T Consensus 84 -~~------g~~~~~~~~~~~~t~~~~~~-~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~ 155 (307)
T COG3386 84 -EH------GVRLLDPDTGGKITLLAEPE-DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVV 155 (307)
T ss_pred -cc------ccEEEeccCCceeEEecccc-CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEE
Confidence 33 377778776655 3223332 2334799999999999999999876 36899999988877
Q ss_pred EEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCC---Cc-eeEEEEeccCCcCCCCCCeEEEcCC
Q 039428 188 SIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRK---EE-EEVKLIELRGGSSLSLGDGLALLSP 262 (335)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~---~~-~~~~~~~~~g~~~~~~pdGia~d~~ 262 (335)
+++.. ....|||||||||| .||++|+..++|+|++.+. .. +....+.... .-+.|||+++|.+
T Consensus 156 ~l~~~----------~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~--~~G~PDG~~vDad 223 (307)
T COG3386 156 RLLDD----------DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE--EPGLPDGMAVDAD 223 (307)
T ss_pred EeecC----------cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC--CCCCCCceEEeCC
Confidence 75432 13459999999999 9999999999999999873 11 1222222211 1256999999999
Q ss_pred CcEEEE-ecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEeC---CeEEEEec-cCCCCCcccceeeeeeecC
Q 039428 263 TKLVVA-GNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVKD---GRVYLSHL-LGLGFPNTKKKHLLVEAVF 335 (335)
Q Consensus 263 g~l~va-~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~~---g~lyV~~~-~~~~~~~~~~~~~~~~~~~ 335 (335)
|++|++ ..+...+.++.. ++ +++..+..|. ..|++++|.+ ++|||++. .++. ....+.|+++.+|
T Consensus 224 G~lw~~a~~~g~~v~~~~p-dG----~l~~~i~lP~-~~~t~~~FgG~~~~~L~iTs~~~~~~--~~~~~~~~~G~lf 293 (307)
T COG3386 224 GNLWVAAVWGGGRVVRFNP-DG----KLLGEIKLPV-KRPTNPAFGGPDLNTLYITSARSGMS--RMLTADPLGGGLF 293 (307)
T ss_pred CCEEEecccCCceEEEECC-CC----cEEEEEECCC-CCCccceEeCCCcCEEEEEecCCCCC--ccccccccCceEE
Confidence 999965 332124554443 33 4566666675 5689999964 99999544 4444 3456677777665
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-19 Score=190.15 Aligned_cols=256 Identities=15% Similarity=0.172 Sum_probs=171.8
Q ss_pred CCcceeeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEee-c-CC--------cCCCCcceEEEeCCCCeE
Q 039428 47 PSFLCETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-E-DD--------VVGNATMGIAVDRPRNRL 115 (335)
Q Consensus 47 ~~~~pegia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~-~~--------~~~~~p~Gi~~d~~~g~l 115 (335)
+-.+|.++++|+. |++|+.+..+++|+++|. ++.+ +. .+.. . .+ ...+.|+||++|++++.|
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~-~G~~----i~--~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~L 638 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDL-DGNF----IV--QIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLL 638 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeC-CCCE----EE--EEccCCCcCCCCCchhccccCCCcEEEEeCCCCEE
Confidence 3468999999986 556666588999999985 5652 21 1211 0 00 012469999999756779
Q ss_pred EEEEecCCCCccceEEEEECCCCeEEEEeec-------CC----CccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccC
Q 039428 116 LVAFTDVLGNKYSALAAYDLSTWKRLFLTQL-------SG----KSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVE 183 (335)
Q Consensus 116 ~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~-------~~----~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~ 183 (335)
|| +|..++ .|.++|+.++.+...... .+ ..+.++.|+++++|+ +|++||+|+.+++|+++|+.
T Consensus 639 YV--aDt~n~---~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~ 713 (1057)
T PLN02919 639 YV--ADTENH---ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNIS 713 (1057)
T ss_pred EE--EeCCCc---eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECC
Confidence 99 576554 599999988876522111 00 001257899999999 68899999999999999987
Q ss_pred CcEEEEe-cCCccc----cccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEec-----------c
Q 039428 184 GQLLSII-RSPLFT----AKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIEL-----------R 246 (335)
Q Consensus 184 g~~~~~~-~~~~~~----~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~-----------~ 246 (335)
+.....+ ++.... .......+..|+||+++|+| +|||+|..+++|.++|+++++ ...+.. .
T Consensus 714 ~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~--~~~~~gg~~~~~~~l~~f 791 (1057)
T PLN02919 714 DGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG--SRLLAGGDPTFSDNLFKF 791 (1057)
T ss_pred CCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc--EEEEEecccccCcccccc
Confidence 6554433 221100 00112245679999999998 699999999999999998752 222210 0
Q ss_pred C-------CcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeee----e-----cCCCCCcceEEEEe-CC
Q 039428 247 G-------GSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAK----F-----NGPTHRVATAATVK-DG 309 (335)
Q Consensus 247 g-------~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~----~-----~~p~~~~Pt~va~~-~g 309 (335)
| ...+..|.|++++++|++||++...+.+++++...+... .+.+. + ....+..|.+++++ +|
T Consensus 792 G~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG 870 (1057)
T PLN02919 792 GDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENG 870 (1057)
T ss_pred cCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCC
Confidence 0 012457999999999999999887688998887554221 22221 0 01135679999996 88
Q ss_pred eEEEEecc
Q 039428 310 RVYLSHLL 317 (335)
Q Consensus 310 ~lyV~~~~ 317 (335)
+|||++..
T Consensus 871 ~lyVaDt~ 878 (1057)
T PLN02919 871 RLFVADTN 878 (1057)
T ss_pred CEEEEECC
Confidence 99997643
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-18 Score=181.27 Aligned_cols=251 Identities=16% Similarity=0.167 Sum_probs=170.5
Q ss_pred Hhhhhhhhhh-hhhhhhcCCCceeEEEc-----------C--C------------CcceeeeEEcCCCCEEEEE-ecCCe
Q 039428 19 AIPIAYIISI-ELAIAMAKPATHVYQYH-----------S--P------------SFLCETAKWDDVGRRFLVS-FLDGG 71 (335)
Q Consensus 19 ~~p~~~~~~~-~~~~~~~d~~~~~~~~~-----------~--~------------~~~pegia~d~~g~~~~~~-~~~~~ 71 (335)
..|-+++++. .+.++++|...+++... + . -..|.|++++++++.+|++ ..+++
T Consensus 568 ~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 568 KFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred CCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 4455677765 45688988877766541 1 0 1259999999998866665 77789
Q ss_pred EEEEECCCCCCCcceeeeeEEeec-------C-C-----cCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCC
Q 039428 72 VGQVLVPDEYSPGTVLEEVKLVKE-------D-D-----VVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW 138 (335)
Q Consensus 72 I~~~d~~~g~~~~~v~~~~~~~~~-------~-~-----~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~ 138 (335)
|.++|..++. +. .+... . + ...+.|.+++++++++++||+ |..+ ++|++||..++
T Consensus 648 Ir~id~~~~~-----V~--tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVa--d~~~---~~I~v~d~~~g 715 (1057)
T PLN02919 648 LREIDFVNET-----VR--TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIA--MAGQ---HQIWEYNISDG 715 (1057)
T ss_pred EEEEecCCCE-----EE--EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEE--ECCC---CeEEEEECCCC
Confidence 9999854332 22 12110 0 0 012578999999878999994 5544 45999999887
Q ss_pred eEEEEe-ec-----CC---CccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEE-ec-CCcc-----c-----
Q 039428 139 KRLFLT-QL-----SG---KSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSI-IR-SPLF-----T----- 196 (335)
Q Consensus 139 ~~~~~~-~~-----~~---~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~-~~-~~~~-----~----- 196 (335)
...... +. .+ ....+..|++++++++|+ +||+|+.+++|+++|+++..... .+ .+.+ .
T Consensus 716 ~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 716 VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 654211 10 00 001257899999999986 99999999999999987433222 21 1100 0
Q ss_pred cccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCC----------cCCCCCCeEEEcCCCcEE
Q 039428 197 AKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGG----------SSLSLGDGLALLSPTKLV 266 (335)
Q Consensus 197 ~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~----------~~~~~pdGia~d~~g~l~ 266 (335)
.++....+..|.|++++++|.|||+|..+++|.+||++++ .+..+...|. ..+..|.||+++++|++|
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg--~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly 873 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK--RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF 873 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC--eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence 0011123557999999999999999999999999999876 4443332221 124579999999999999
Q ss_pred EEecCCCeEEEEEcCCC
Q 039428 267 VAGNPYPSARLVESSDG 283 (335)
Q Consensus 267 va~~~~~~~~v~~~~~~ 283 (335)
|++...+.+++++...+
T Consensus 874 VaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 874 VADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EEECCCCEEEEEECCCC
Confidence 99877688999987654
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-17 Score=142.41 Aligned_cols=232 Identities=16% Similarity=0.136 Sum_probs=169.8
Q ss_pred CCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 47 PSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
.+..|..++.++||.+||.....+.|-++|+.+|+ ++ .. |--.|.+|+||.+++ +|..|+ .|..
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGe-----v~---~y--pLg~Ga~Phgiv~gp-dg~~Wi--td~~--- 123 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGE-----VE---TY--PLGSGASPHGIVVGP-DGSAWI--TDTG--- 123 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCc-----eE---EE--ecCCCCCCceEEECC-CCCeeE--ecCc---
Confidence 35578999999999999999889999999987666 23 22 222345899999998 899999 4664
Q ss_pred cceEEEEECCCCeEE-EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 127 YSALAAYDLSTWKRL-FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
..|.++|+++.++. +..+.+ ......+-..+|++|++|++.+ .|.--|+||.....+++.. +++.
T Consensus 124 -~aI~R~dpkt~evt~f~lp~~---~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpa---------PqG~ 189 (353)
T COG4257 124 -LAIGRLDPKTLEVTRFPLPLE---HADANLETAVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPA---------PQGG 189 (353)
T ss_pred -ceeEEecCcccceEEeecccc---cCCCcccceeeCCCccEEEeec-cccceecCcccCceeeecc---------CCCC
Confidence 25999999888765 333321 1246678899999999999976 4555589998777765432 2567
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC-c
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG-W 284 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~-~ 284 (335)
+|+|||..|||.+|++....+.|.++|+... ..+++..+... -+....+-.|+.|++|++.++.+++..++.... |
T Consensus 190 gpyGi~atpdGsvwyaslagnaiaridp~~~--~aev~p~P~~~-~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW 266 (353)
T COG4257 190 GPYGICATPDGSVWYASLAGNAIARIDPFAG--HAEVVPQPNAL-KAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSW 266 (353)
T ss_pred CCcceEECCCCcEEEEeccccceEEcccccC--CcceecCCCcc-cccccccccCccCcEEEeccCCceeeEeCcccccc
Confidence 8999999999999999999999999999887 55666544321 245678889999999999875455554543322 4
Q ss_pred EEEEEeeeecCCC-CCcceEEEEe-CCeEEEEecc
Q 039428 285 ETASVVAKFNGPT-HRVATAATVK-DGRVYLSHLL 317 (335)
Q Consensus 285 ~~~~~~~~~~~p~-~~~Pt~va~~-~g~lyV~~~~ 317 (335)
.. +..|. ...|.++-++ .|++|.++..
T Consensus 267 ~e------ypLPgs~arpys~rVD~~grVW~sea~ 295 (353)
T COG4257 267 IE------YPLPGSKARPYSMRVDRHGRVWLSEAD 295 (353)
T ss_pred ee------eeCCCCCCCcceeeeccCCcEEeeccc
Confidence 43 22231 3346678887 7999996654
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=145.37 Aligned_cols=198 Identities=17% Similarity=0.226 Sum_probs=137.8
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeee--------EEeec-----CCcCCCCcceEEEeCCCCe
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEV--------KLVKE-----DDVVGNATMGIAVDRPRNR 114 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~--------~~~~~-----~~~~~~~p~Gi~~d~~~g~ 114 (335)
...||.+.+|+.+.=-++...+++|.+|......+ +... ..... .+...++|.||+++..+|+
T Consensus 53 ~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gw----v~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggd 128 (376)
T KOG1520|consen 53 LTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGW----VKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGD 128 (376)
T ss_pred cCChhhheecccCCCceEEEECCceEEEeccCceE----EEEEeccccccccccCCCcceecccccCCcceEEeccCCCe
Confidence 44678888887776555555566666664221111 1100 00011 1111267999999986779
Q ss_pred EEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-----------------CCeE
Q 039428 115 LLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-----------------SSKI 177 (335)
Q Consensus 115 l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-----------------~~~I 177 (335)
||| +|.. -.|+++++++++.....+ +..++++.+.|++.+|++|.+|+||+. +||+
T Consensus 129 L~V--aDAY----lGL~~V~p~g~~a~~l~~-~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl 201 (376)
T KOG1520|consen 129 LYV--ADAY----LGLLKVGPEGGLAELLAD-EAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRL 201 (376)
T ss_pred EEE--Eecc----eeeEEECCCCCcceeccc-cccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccce
Confidence 999 5765 359999999886443222 123445789999999999999999973 5899
Q ss_pred EEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCc-eeEEEEeccCCcCCCCCC
Q 039428 178 WKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEE-EEVKLIELRGGSSLSLGD 255 (335)
Q Consensus 178 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~-~~~~~~~~~g~~~~~~pd 255 (335)
.++|+..+..+++-+ .+..|||++++||+ .+.++++...+|.|+.+++.+ ++.+.+.. + ..++||
T Consensus 202 ~~YD~~tK~~~VLld----------~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~-~--LPG~PD 268 (376)
T KOG1520|consen 202 FRYDPSTKVTKVLLD----------GLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAE-G--LPGYPD 268 (376)
T ss_pred EEecCcccchhhhhh----------cccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhh-c--CCCCCc
Confidence 999998877664432 35679999999999 999999999999999999973 12244431 1 135699
Q ss_pred eEEEcCCCcEEEEe
Q 039428 256 GLALLSPTKLVVAG 269 (335)
Q Consensus 256 Gia~d~~g~l~va~ 269 (335)
.|..+++|++||+-
T Consensus 269 NIR~~~~G~fWVal 282 (376)
T KOG1520|consen 269 NIRRDSTGHFWVAL 282 (376)
T ss_pred ceeECCCCCEEEEE
Confidence 99999999999994
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-16 Score=138.84 Aligned_cols=190 Identities=22% Similarity=0.233 Sum_probs=127.8
Q ss_pred eeeeEEc-CCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecC-Cc-CCCCcceEEEeCCCCeEEEEEecCCCC-c
Q 039428 51 CETAKWD-DVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKED-DV-VGNATMGIAVDRPRNRLLVAFTDVLGN-K 126 (335)
Q Consensus 51 pegia~d-~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~-~~-~~~~p~Gi~~d~~~g~l~v~~~D~~~~-~ 126 (335)
|.|++++ ++|. +|++. .+.+.++|..+++ ++. +...+ +. ....|+.+++|+ +|+||++....... .
T Consensus 42 ~~G~~~~~~~g~-l~v~~-~~~~~~~d~~~g~-----~~~--~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~ 111 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVAD-SGGIAVVDPDTGK-----VTV--LADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASG 111 (246)
T ss_dssp EEEEEEECTTSE-EEEEE-TTCEEEEETTTTE-----EEE--EEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTC
T ss_pred CceEEEEccCCE-EEEEE-cCceEEEecCCCc-----EEE--EeeccCCCcccCCCceEEEcC-CCCEEEEecCCCcccc
Confidence 8999999 5654 55553 3455555865554 221 33221 11 235799999997 89999965432211 1
Q ss_pred c--ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccC--Cc-EE--EEecCCccccc
Q 039428 127 Y--SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVE--GQ-LL--SIIRSPLFTAK 198 (335)
Q Consensus 127 ~--~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~--g~-~~--~~~~~~~~~~~ 198 (335)
. .+|++++++ ++...... .+..||+|+++++|+ +||+|+..++|++++.+ +. .. +.+. .+..
T Consensus 112 ~~~g~v~~~~~~-~~~~~~~~------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~--~~~~- 181 (246)
T PF08450_consen 112 IDPGSVYRIDPD-GKVTVVAD------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFI--DFPG- 181 (246)
T ss_dssp GGSEEEEEEETT-SEEEEEEE------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE--E-SS-
T ss_pred ccccceEEECCC-CeEEEEec------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEE--EcCC-
Confidence 1 469999998 66553322 167899999999985 99999999999999985 33 11 1110 0110
Q ss_pred cccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc-CC-CcEEEEec
Q 039428 199 EWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL-SP-TKLVVAGN 270 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d-~~-g~l~va~~ 270 (335)
....|.|+++|++|+|||+...+++|+++++++. ....+.++. ..|..+++. ++ +.|||+..
T Consensus 182 ----~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~--~~~~i~~p~----~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 182 ----GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK--LLREIELPV----PRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp ----SSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC--EEEEEE-SS----SSEEEEEEESTTSSEEEEEEB
T ss_pred ----CCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc--EEEEEcCCC----CCEEEEEEECCCCCEEEEEeC
Confidence 1124999999999999999999999999999976 677787653 348999994 33 57999854
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-14 Score=132.85 Aligned_cols=241 Identities=18% Similarity=0.180 Sum_probs=148.9
Q ss_pred CCcceeeeEEcCCCCEEEEE-ecCCeEEEEECCC-CCCCcceeeeeEEeec----CC---cCCCCcceEEEeCCCCeEEE
Q 039428 47 PSFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPD-EYSPGTVLEEVKLVKE----DD---VVGNATMGIAVDRPRNRLLV 117 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~-g~~~~~v~~~~~~~~~----~~---~~~~~p~Gi~~d~~~g~l~v 117 (335)
.+..|..++++++++.+|++ ..++.|..++... +. +......... +. ..+..|+.+.++|+++.+||
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~----l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS----LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE----EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc----cceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 45678999999999999998 6678887665432 43 1111112211 11 12246899999997778998
Q ss_pred EEecCCCCccceEEEEECCCCe--EEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccC--CcEEEEecC
Q 039428 118 AFTDVLGNKYSALAAYDLSTWK--RLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVE--GQLLSIIRS 192 (335)
Q Consensus 118 ~~~D~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~--g~~~~~~~~ 192 (335)
.|.+.+ +|++|+.+... +.....+.. +....|..++++++| .+||++...+.|.+++.+ ....+.+..
T Consensus 161 --~dlG~D---~v~~~~~~~~~~~l~~~~~~~~--~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 161 --PDLGAD---RVYVYDIDDDTGKLTPVDSIKV--PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp --EETTTT---EEEEEEE-TTS-TEEEEEEEEC--STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred --EecCCC---EEEEEEEeCCCceEEEeecccc--ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence 566554 48877776543 433222211 125789999999998 599999999999988765 322222211
Q ss_pred CccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCC-c--eeEEEEeccCCcCCCCCCeEEEcCCCc-EEE
Q 039428 193 PLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKE-E--EEVKLIELRGGSSLSLGDGLALLSPTK-LVV 267 (335)
Q Consensus 193 ~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~-~--~~~~~~~~~g~~~~~~pdGia~d~~g~-l~v 267 (335)
- -..|........+.+|+++||| +|||++...+.|..|+++.. + ..+..+...| ..|.+|+++++|+ |||
T Consensus 234 ~-~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G----~~Pr~~~~s~~g~~l~V 308 (345)
T PF10282_consen 234 I-STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGG----KFPRHFAFSPDGRYLYV 308 (345)
T ss_dssp E-ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESS----SSEEEEEE-TTSSEEEE
T ss_pred e-eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCC----CCccEEEEeCCCCEEEE
Confidence 0 0111111112368999999999 99999999999999988542 1 1333444434 3499999999985 888
Q ss_pred EecCCCeEEEEEcCCC-cEEEEEeeeecCCCCCcceEEEE
Q 039428 268 AGNPYPSARLVESSDG-WETASVVAKFNGPTHRVATAATV 306 (335)
Q Consensus 268 a~~~~~~~~v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~ 306 (335)
++..++.+.+++.+.. .........+..|. |++|.|
T Consensus 309 a~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~---p~ci~f 345 (345)
T PF10282_consen 309 ANQDSNTVSVFDIDPDTGKLTPVGSSVPIPS---PVCIVF 345 (345)
T ss_dssp EETTTTEEEEEEEETTTTEEEEEEEEEESSS---EEEEEE
T ss_pred EecCCCeEEEEEEeCCCCcEEEecccccCCC---CEEEeC
Confidence 8887888988876422 22222222333333 667654
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-14 Score=124.34 Aligned_cols=232 Identities=9% Similarity=0.025 Sum_probs=160.1
Q ss_pred CCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCC-cCCCCcceEEEeCCCCeEEEEEecCCC
Q 039428 46 SPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDD-VVGNATMGIAVDRPRNRLLVAFTDVLG 124 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~-~~~~~p~Gi~~d~~~g~l~v~~~D~~~ 124 (335)
+.+..|.+|.++|+|+.|+++... .|.|+|+++.+ +++ | ..|. ......+-..+|+ .|+||.+.. .+
T Consensus 101 g~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e-----vt~--f-~lp~~~a~~nlet~vfD~-~G~lWFt~q-~G- 168 (353)
T COG4257 101 GSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE-----VTR--F-PLPLEHADANLETAVFDP-WGNLWFTGQ-IG- 168 (353)
T ss_pred CCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc-----eEE--e-ecccccCCCcccceeeCC-CccEEEeec-cc-
Confidence 345679999999999999998433 99999864444 222 2 1222 1112345677896 899999632 21
Q ss_pred CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 125 NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 125 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
.--++|+.++.+.. .+. + + ...|+||++.|||.+|++....+.|.++|+.....+. +..|+ +-.
T Consensus 169 ----~yGrLdPa~~~i~v-fpa--P-q-G~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev-----~p~P~--~~~ 232 (353)
T COG4257 169 ----AYGRLDPARNVISV-FPA--P-Q-GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEV-----VPQPN--ALK 232 (353)
T ss_pred ----cceecCcccCceee-ecc--C-C-CCCCcceEECCCCcEEEEeccccceEEcccccCCcce-----ecCCC--ccc
Confidence 12278888775542 222 2 2 5789999999999999999999999999987544332 22221 113
Q ss_pred cccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCc
Q 039428 205 FGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGW 284 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~ 284 (335)
.+...|-.||.|++|+++..++++++||+... ....+++++.. ..|+.|.+|..|++|.++..+|.+-.++...
T Consensus 233 ~gsRriwsdpig~~wittwg~g~l~rfdPs~~--sW~eypLPgs~--arpys~rVD~~grVW~sea~agai~rfdpet-- 306 (353)
T COG4257 233 AGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT--SWIEYPLPGSK--ARPYSMRVDRHGRVWLSEADAGAIGRFDPET-- 306 (353)
T ss_pred ccccccccCccCcEEEeccCCceeeEeCcccc--cceeeeCCCCC--CCcceeeeccCCcEEeeccccCceeecCccc--
Confidence 45778888999999999999999999999987 67778887744 6799999999999999988667665554321
Q ss_pred EEEEEeeeecCCCCCcceEEEEe--CCeEEEEe
Q 039428 285 ETASVVAKFNGPTHRVATAATVK--DGRVYLSH 315 (335)
Q Consensus 285 ~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~ 315 (335)
.....+..|.. .+-++.++ .|++|.++
T Consensus 307 ---a~ftv~p~pr~-n~gn~ql~gr~ge~W~~e 335 (353)
T COG4257 307 ---ARFTVLPIPRP-NSGNIQLDGRPGELWFTE 335 (353)
T ss_pred ---ceEEEecCCCC-CCCceeccCCCCceeecc
Confidence 22233333431 12345554 78999865
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-13 Score=117.48 Aligned_cols=237 Identities=16% Similarity=0.153 Sum_probs=142.8
Q ss_pred cceeeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeC-CCCeEEEEEecCCCCc
Q 039428 49 FLCETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDR-PRNRLLVAFTDVLGNK 126 (335)
Q Consensus 49 ~~pegia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~-~~g~l~v~~~D~~~~~ 126 (335)
...||+.|+.+ +.+||++...+.|.|+|-. .++ +. +..+..|.. .|..+-- ..-..|++.... +
T Consensus 15 ~~GEgp~w~~~~~sLl~VDi~ag~v~r~D~~-qn~----v~-ra~ie~p~~-----ag~ilpv~~~~q~~~v~~G~---k 80 (310)
T KOG4499|consen 15 VLGEGPHWDVERQSLLYVDIEAGEVHRYDIE-QNK----VY-RAKIEGPPS-----AGFILPVEGGPQEFAVGCGS---K 80 (310)
T ss_pred cCCCCCceEEecceEEEEEeccCceehhhhh-hhh----eE-EEEEecCcc-----eeEEEEecCCCceEEEeecc---e
Confidence 34599999887 5688888989999999854 442 11 123333322 2333321 122455543322 1
Q ss_pred cceEEEEECCCCeEEEEeecC--CCccCCCCCCceeECCCCcEEEEeC---------CCCeEEEEccCCcEEEEecCCcc
Q 039428 127 YSALAAYDLSTWKRLFLTQLS--GKSEEKSTADDIAVDAEGNAYVTDV---------VSSKIWKVGVEGQLLSIIRSPLF 195 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~p~~~~vd~~G~lyV~d~---------~~~~I~~~d~~g~~~~~~~~~~~ 195 (335)
..+..||-..........+. .+....++.||..+||+|+.|+.-. ..+.+|++-++++...++..
T Consensus 81 -f~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~--- 156 (310)
T KOG4499|consen 81 -FVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNC--- 156 (310)
T ss_pred -EEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehh---
Confidence 34555553322111111211 1122368999999999999988532 24666777666665443321
Q ss_pred ccccccccccccCeEEEccCC-eEEEEECCCCEEEEEe--CCCCc--eeEEEEeccCC--cCCCCCCeEEEcCCCcEEEE
Q 039428 196 TAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKID--IRKEE--EEVKLIELRGG--SSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 196 ~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d--~~~~~--~~~~~~~~~g~--~~~~~pdGia~d~~g~l~va 268 (335)
..-+|||++|.|. ..|+.|+.+..|..+| ..++. ....++++... .....||||++|.+|+||||
T Consensus 157 --------v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va 228 (310)
T KOG4499|consen 157 --------VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVA 228 (310)
T ss_pred --------ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEE
Confidence 2349999999888 8999999999995555 54441 12234443221 12356999999999999999
Q ss_pred ecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEeC---CeEEEEec
Q 039428 269 GNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVKD---GRVYLSHL 316 (335)
Q Consensus 269 ~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~~---g~lyV~~~ 316 (335)
.+ |+.+|+..+.. .++++.++..|. ...|+++|.+ +-+||+..
T Consensus 229 ~~--ng~~V~~~dp~--tGK~L~eiklPt-~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 229 TF--NGGTVQKVDPT--TGKILLEIKLPT-PQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred Ee--cCcEEEEECCC--CCcEEEEEEcCC-CceEEEEecCCCccEEEEEeh
Confidence 77 44555554432 345666666674 3458899963 67888443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-13 Score=125.84 Aligned_cols=235 Identities=10% Similarity=0.091 Sum_probs=144.7
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCC-CCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPD-EYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~-g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.|.+++++++|+.+|++ ..+++|..++..+ +.. .+. ....+.. ..|++++++|+++.+||++ ...
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~----~~~--~~~~~~~--~~~~~~~~~p~g~~l~v~~--~~~--- 147 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIP----VAP--IQIIEGL--EGCHSANIDPDNRTLWVPC--LKE--- 147 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCC----CCc--eeeccCC--CcccEeEeCCCCCEEEEee--CCC---
Confidence 58899999999988888 5578888887532 220 110 1111221 3688999998667888853 332
Q ss_pred ceEEEEECCC-CeEEE----EeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccC--CcEEEEecCCcccccc
Q 039428 128 SALAAYDLST-WKRLF----LTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVE--GQLLSIIRSPLFTAKE 199 (335)
Q Consensus 128 ~~v~~~d~~~-~~~~~----~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~--g~~~~~~~~~~~~~~~ 199 (335)
+.|.+||.++ +.+.. .... + ....|.+++++|+|+ +||++...+.|..++.+ +...+.+..-. ..|.
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~--~--~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~-~~p~ 222 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTT--V--EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD-MMPA 222 (330)
T ss_pred CEEEEEEECCCCcccccCCCceec--C--CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe-cCCC
Confidence 3599999875 33321 1111 1 145789999999985 89999988999888765 22222221100 0011
Q ss_pred ccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEE
Q 039428 200 WYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARL 277 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v 277 (335)
.......+.+|+++||| +||+++...+.|..|+.+........+.... . ...|.+++++++| .||+++.+++.+.+
T Consensus 223 ~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~-~-~~~p~~~~~~~dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 223 DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQP-T-ETQPRGFNIDHSGKYLIAAGQKSHHISV 300 (330)
T ss_pred cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEe-c-cccCCceEECCCCCEEEEEEccCCcEEE
Confidence 00111235679999999 8999998899998888754321222222111 1 1359999999998 58888776788888
Q ss_pred EEcCCCcEEEEEeeeecCCCCCcceEEEE
Q 039428 278 VESSDGWETASVVAKFNGPTHRVATAATV 306 (335)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~p~~~~Pt~va~ 306 (335)
++.+......+....+. ....|.++++
T Consensus 301 ~~~~~~~g~l~~~~~~~--~g~~P~~~~~ 327 (330)
T PRK11028 301 YEIDGETGLLTELGRYA--VGQGPMWVSV 327 (330)
T ss_pred EEEcCCCCcEEEccccc--cCCCceEEEE
Confidence 87642211123334443 2456788876
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.9e-13 Score=122.88 Aligned_cols=245 Identities=11% Similarity=0.095 Sum_probs=150.3
Q ss_pred cceeeeEEcCCCCEEEEE-ecCCeEEEEECC-CCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 49 FLCETAKWDDVGRRFLVS-FLDGGVGQVLVP-DEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~~~~I~~~d~~-~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
-.|..++++|+++.+|+. ...+.|..|+.. ++. +. ...... .+..|.+|++++++..+|+++.. .
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-----l~---~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~--~-- 101 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-----LT---FAAESP-LPGSPTHISTDHQGRFLFSASYN--A-- 101 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-----eE---Eeeeec-CCCCceEEEECCCCCEEEEEEcC--C--
Confidence 357899999999988887 556778666532 233 22 111111 12368899999866678886422 2
Q ss_pred cceEEEEECCC-CeEE-EEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccc
Q 039428 127 YSALAAYDLST-WKRL-FLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 127 ~~~v~~~d~~~-~~~~-~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~ 202 (335)
+.|..||.+. +... ..... +....|..++++|+| .+||++...+.|.++|.+. +........... .+
T Consensus 102 -~~v~v~~~~~~g~~~~~~~~~----~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~----~~ 172 (330)
T PRK11028 102 -NCVSVSPLDKDGIPVAPIQII----EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT----TV 172 (330)
T ss_pred -CeEEEEEECCCCCCCCceeec----cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee----cC
Confidence 4588888763 2221 11111 113568889999998 4889999999999998753 221100000001 11
Q ss_pred cccccCeEEEccCC-eEEEEECCCCEEEEEeCCC--Cc-eeEEEEeccCCc--CCCCCCeEEEcCCCc-EEEEecCCCeE
Q 039428 203 NVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRK--EE-EEVKLIELRGGS--SLSLGDGLALLSPTK-LVVAGNPYPSA 275 (335)
Q Consensus 203 ~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~--~~-~~~~~~~~~g~~--~~~~pdGia~d~~g~-l~va~~~~~~~ 275 (335)
...+|++++++||| ++|+++..+++|..++.+. ++ ...+.+...... ....|.+++++++|+ +|+++..++.+
T Consensus 173 ~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I 252 (330)
T PRK11028 173 EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLI 252 (330)
T ss_pred CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeE
Confidence 24569999999999 8999999899998888863 21 012222211100 012344689999985 88887666888
Q ss_pred EEEEcCCCcEEEEEeeeecCCCCCcceEEEEe--CCeEEEEecc
Q 039428 276 RLVESSDGWETASVVAKFNGPTHRVATAATVK--DGRVYLSHLL 317 (335)
Q Consensus 276 ~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~~~ 317 (335)
.+++.+.+....++...+. ....|..+++. +.+|||+...
T Consensus 253 ~v~~i~~~~~~~~~~~~~~--~~~~p~~~~~~~dg~~l~va~~~ 294 (330)
T PRK11028 253 SVFSVSEDGSVLSFEGHQP--TETQPRGFNIDHSGKYLIAAGQK 294 (330)
T ss_pred EEEEEeCCCCeEEEeEEEe--ccccCCceEECCCCCEEEEEEcc
Confidence 8887654322233444432 23456778884 6789997653
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-12 Score=122.27 Aligned_cols=250 Identities=14% Similarity=0.129 Sum_probs=149.9
Q ss_pred CcceeeeEEcCCCCEEEEEec-----------C-CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeE
Q 039428 48 SFLCETAKWDDVGRRFLVSFL-----------D-GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRL 115 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~-----------~-~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l 115 (335)
-..|.+++||++|++|++... . .+|+++++.++.- +..+..++. .++ ..|+||++.+ +| |
T Consensus 13 ~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG---~~d~~~vfa-~~l--~~p~Gi~~~~-~G-l 84 (367)
T TIGR02604 13 LRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDG---KYDKSNVFA-EEL--SMVTGLAVAV-GG-V 84 (367)
T ss_pred cCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCC---CcceeEEee-cCC--CCccceeEec-CC-E
Confidence 347999999999999988741 2 3899997543321 011111221 222 3789999985 67 9
Q ss_pred EEEEecCCCCccceEEEE-ECCCC-----eEE-EEeecCCC-ccCCCCCCceeECCCCcEEEEeCC--------------
Q 039428 116 LVAFTDVLGNKYSALAAY-DLSTW-----KRL-FLTQLSGK-SEEKSTADDIAVDAEGNAYVTDVV-------------- 173 (335)
Q Consensus 116 ~v~~~D~~~~~~~~v~~~-d~~~~-----~~~-~~~~~~~~-~~~~~~p~~~~vd~~G~lyV~d~~-------------- 173 (335)
||+ +. ..|+++ |.++. +.. ....+... ......++++++++||+|||++..
T Consensus 85 yV~--~~-----~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~ 157 (367)
T TIGR02604 85 YVA--TP-----PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDE 157 (367)
T ss_pred EEe--CC-----CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccC
Confidence 995 32 358888 43321 222 22223211 112467999999999999998762
Q ss_pred -----CCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCc---------ee
Q 039428 174 -----SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEE---------EE 239 (335)
Q Consensus 174 -----~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~---------~~ 239 (335)
.+.|+|++++|+..+.+.. .+.+|+|++++++|.||++|...+...++..-... +.
T Consensus 158 ~~~~~~g~i~r~~pdg~~~e~~a~----------G~rnp~Gl~~d~~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~ 227 (367)
T TIGR02604 158 SRQGLGGGLFRYNPDGGKLRVVAH----------GFQNPYGHSVDSWGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGR 227 (367)
T ss_pred cccccCceEEEEecCCCeEEEEec----------CcCCCccceECCCCCEEEEccCCCceeEEcccccccccCCCCCCCc
Confidence 2689999999877664432 24569999999999999999877666665532110 00
Q ss_pred -E---------EEEe-----------ccCCc--CCCCCCeEEEcC--------CCcEEEEecCCCeEEEEEcCC-Cc-EE
Q 039428 240 -V---------KLIE-----------LRGGS--SLSLGDGLALLS--------PTKLVVAGNPYPSARLVESSD-GW-ET 286 (335)
Q Consensus 240 -~---------~~~~-----------~~g~~--~~~~pdGia~d~--------~g~l~va~~~~~~~~v~~~~~-~~-~~ 286 (335)
. +... ..... ....|.|+++-. +|.+++++.....+..+.... +. ..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~~g~~~~ 307 (367)
T TIGR02604 228 RYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLEPKGAGFK 307 (367)
T ss_pred ccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEeecCCCccE
Confidence 0 0000 00000 012588998873 278999987556666666542 31 11
Q ss_pred EEEeeeecCC-CCCcceEEEEe-CCeEEEEeccCCCCC
Q 039428 287 ASVVAKFNGP-THRVATAATVK-DGRVYLSHLLGLGFP 322 (335)
Q Consensus 287 ~~~~~~~~~p-~~~~Pt~va~~-~g~lyV~~~~~~~~~ 322 (335)
.+...-+... ....|..+++. +|.|||+++...+..
T Consensus 308 ~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~~~~i~ 345 (367)
T TIGR02604 308 GERPEFLRSNDTWFRPVNVTVGPDGALYVSDWYDRGIE 345 (367)
T ss_pred eecCceEecCCCcccccceeECCCCCEEEEEeccCccc
Confidence 2211112211 22357788886 999999997665443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.8e-13 Score=123.42 Aligned_cols=252 Identities=17% Similarity=0.208 Sum_probs=157.6
Q ss_pred CCcceeeeEEcCCCCEEEEEe----cCCeEEEEEC-CC-CCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEe
Q 039428 47 PSFLCETAKWDDVGRRFLVSF----LDGGVGQVLV-PD-EYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFT 120 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~----~~~~I~~~d~-~~-g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~ 120 (335)
....|.-++++++++++|+.. ..+.|..++. .+ ++ ++ .+......+..|..+++++++..||+++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~-----L~---~~~~~~~~g~~p~~i~~~~~g~~l~van- 105 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT-----LT---LLNSVPSGGSSPCHIAVDPDGRFLYVAN- 105 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTE-----EE---EEEEEEESSSCEEEEEECTTSSEEEEEE-
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcce-----eE---EeeeeccCCCCcEEEEEecCCCEEEEEE-
Confidence 345688999999999999983 3567654442 22 33 22 2211111345788999998778889954
Q ss_pred cCCCCccceEEEEECCC-CeEEEE---eecC--CC---ccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcE--EE
Q 039428 121 DVLGNKYSALAAYDLST-WKRLFL---TQLS--GK---SEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQL--LS 188 (335)
Q Consensus 121 D~~~~~~~~v~~~d~~~-~~~~~~---~~~~--~~---~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~--~~ 188 (335)
..+ +.|.+|+.+. +.+... .... ++ .+....|..+.++|+|+ +||+|...++|++++.+... +.
T Consensus 106 -y~~---g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~ 181 (345)
T PF10282_consen 106 -YGG---GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLT 181 (345)
T ss_dssp -TTT---TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEE
T ss_pred -ccC---CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEE
Confidence 332 3577777764 544321 1110 11 12357888999999986 99999999999999876432 22
Q ss_pred EecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCce---eEEEEeccCCc--CCCCCCeEEEcCC
Q 039428 189 IIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEE---EVKLIELRGGS--SLSLGDGLALLSP 262 (335)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~---~~~~~~~~g~~--~~~~pdGia~d~~ 262 (335)
.. ..+. .+...+|..|+++||| ++||.+..++.|.+++.+...+ ..+.+...+.. ....|.+|++.++
T Consensus 182 ~~--~~~~----~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd 255 (345)
T PF10282_consen 182 PV--DSIK----VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD 255 (345)
T ss_dssp EE--EEEE----CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT
T ss_pred Ee--eccc----cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC
Confidence 11 1111 1245679999999999 9999999999999998883211 22333322111 1125889999999
Q ss_pred Cc-EEEEecCCCeEEEEEcCCC-cEEEEEeeeecCCCCCcceEEEEe--CCeEEEEeccCC
Q 039428 263 TK-LVVAGNPYPSARLVESSDG-WETASVVAKFNGPTHRVATAATVK--DGRVYLSHLLGL 319 (335)
Q Consensus 263 g~-l~va~~~~~~~~v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~~~~~ 319 (335)
|+ |||++.+++.+.+++.+.. .+ .+....+.. .+..|..++++ +..|||+...+.
T Consensus 256 g~~lyvsnr~~~sI~vf~~d~~~g~-l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 256 GRFLYVSNRGSNSISVFDLDPATGT-LTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp SSEEEEEECTTTEEEEEEECTTTTT-EEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred CCEEEEEeccCCEEEEEEEecCCCc-eEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCC
Confidence 85 8999888899999987422 22 122333321 25668899994 677998765543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-11 Score=116.97 Aligned_cols=206 Identities=23% Similarity=0.235 Sum_probs=148.8
Q ss_pred cceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 49 FLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
..|.++++.+.++..|+. ...+.|.++|.. ... ++. .+. .+..|.+++++++++.+||++.....
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~-~~~---~~~---~~~----vG~~P~~~~~~~~~~~vYV~n~~~~~--- 139 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTA-TNT---VLG---SIP----VGLGPVGLAVDPDGKYVYVANAGNGN--- 139 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCc-ccc---eee---Eee----eccCCceEEECCCCCEEEEEecccCC---
Confidence 678999999999966666 777999999843 321 111 211 22478999999988899996542212
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
+.+.++|..++++...... ...|.+++++++|+ +|++++..++|..+|.++..... .... ...+.+..
T Consensus 140 ~~vsvid~~t~~~~~~~~v------G~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~----~~~~~~~~ 208 (381)
T COG3391 140 NTVSVIDAATNKVTATIPV------GNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG----SLVGVGTG 208 (381)
T ss_pred ceEEEEeCCCCeEEEEEec------CCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc----cccccCCC
Confidence 5699999999887744332 23678999999997 99999999999999988766542 1110 01234567
Q ss_pred cCeEEEccCC-eEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEEEEcCC
Q 039428 207 LNGIVYHPDG-FLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 207 p~Gia~~~dg-~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~~~~ 282 (335)
|.+++++++| ++|+++..+ +++.++|...+ .+.......+. + .|.+++++++| .+|+++...+.+.+++...
T Consensus 209 P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~--~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 209 PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG--NVTATDLPVGS-G-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred CceEEECCCCCEEEEEeccCCCceEEEEeCCCc--eEEEecccccc-C-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 9999999999 799999988 79999999987 33333222212 4 69999999998 5778866557788887654
Q ss_pred C
Q 039428 283 G 283 (335)
Q Consensus 283 ~ 283 (335)
.
T Consensus 285 ~ 285 (381)
T COG3391 285 D 285 (381)
T ss_pred C
Confidence 3
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-10 Score=103.44 Aligned_cols=234 Identities=15% Similarity=0.193 Sum_probs=141.3
Q ss_pred CCCceeEEEcC----CCcceeeeEEcCCCCEEEEE-ecCCeEEEEEC-CCCCCCcceeeeeEEeecCCc------CCCCc
Q 039428 36 KPATHVYQYHS----PSFLCETAKWDDVGRRFLVS-FLDGGVGQVLV-PDEYSPGTVLEEVKLVKEDDV------VGNAT 103 (335)
Q Consensus 36 d~~~~~~~~~~----~~~~pegia~d~~g~~~~~~-~~~~~I~~~d~-~~g~~~~~v~~~~~~~~~~~~------~~~~p 103 (335)
|+..+++++-. .+.-|.-+++|++|+.+|+. ...++|.++-. .+|.. ..++. .+...+. ....+
T Consensus 72 D~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l-~~~v~---~~~h~g~~p~~rQ~~~h~ 147 (346)
T COG2706 72 DPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL-QPVVQ---VVKHTGSGPHERQESPHV 147 (346)
T ss_pred cCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc-cccee---eeecCCCCCCccccCCcc
Confidence 44444555432 23346889999999988888 55677766642 22431 11111 2222221 00126
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEcc
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGV 182 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~ 182 (335)
+-..++|++..|++ .|-+.++ |..|+.+.|.+.......- ++...|..|+|.|+|. +|+....+++|-++.-
T Consensus 148 H~a~~tP~~~~l~v--~DLG~Dr---i~~y~~~dg~L~~~~~~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y 220 (346)
T COG2706 148 HSANFTPDGRYLVV--PDLGTDR---IFLYDLDDGKLTPADPAEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEY 220 (346)
T ss_pred ceeeeCCCCCEEEE--eecCCce---EEEEEcccCcccccccccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEE
Confidence 77778885556666 5766654 9999998776653322211 2367899999999996 9999998888877664
Q ss_pred CC--cEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEE
Q 039428 183 EG--QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLAL 259 (335)
Q Consensus 183 ~g--~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~ 259 (335)
+. ...+.+.. ....|+.-.+....-.|.+++|| +||++|.+.+.|..|..+...+.+..+.... ..-..|.++.+
T Consensus 221 ~~~~g~~~~lQ~-i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~-teg~~PR~F~i 298 (346)
T COG2706 221 NPAVGKFEELQT-IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITP-TEGQFPRDFNI 298 (346)
T ss_pred cCCCceEEEeee-eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEec-cCCcCCcccee
Confidence 43 22222221 11112211123456789999999 9999999999776554443211444443211 11245999999
Q ss_pred cCCCc-EEEEecCCCeEEEEEcCC
Q 039428 260 LSPTK-LVVAGNPYPSARLVESSD 282 (335)
Q Consensus 260 d~~g~-l~va~~~~~~~~v~~~~~ 282 (335)
++.|+ |++++..++.+.|++-+.
T Consensus 299 ~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 299 NPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCCCCEEEEEccCCCcEEEEEEcC
Confidence 99986 555566667788877554
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-11 Score=113.31 Aligned_cols=228 Identities=16% Similarity=0.146 Sum_probs=153.8
Q ss_pred cceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 49 FLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
..|.++++.++|...|+. ...+.+..++.. ... .. .+. ..+ +..|+|+++++.+.++|+.+.+.
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~----~~--~~~-~~g--~~~p~~i~v~~~~~~vyv~~~~~----- 95 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNT----VT--QSL-SVG--GVYPAGVAVNPAGNKVYVTTGDS----- 95 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeecccc-cce----ee--eec-cCC--CccccceeeCCCCCeEEEecCCC-----
Confidence 379999999999555555 555678888643 331 11 111 122 14789999998778899976543
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeC--CCCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDV--VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~--~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
+.|.++|.++......... ...|.+++++++| .+||++. .++.|+++|.++..+... .+ ..
T Consensus 96 ~~v~vid~~~~~~~~~~~v------G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~---~~-------vG 159 (381)
T COG3391 96 NTVSVIDTATNTVLGSIPV------GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT---IP-------VG 159 (381)
T ss_pred CeEEEEcCcccceeeEeee------ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE---Ee-------cC
Confidence 4699999777665544333 2488999999997 7999999 579999999986654421 11 22
Q ss_pred cccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccC--CcCCCCCCeEEEcCCCc-EEEEecCC--CeEEEE
Q 039428 205 FGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRG--GSSLSLGDGLALLSPTK-LVVAGNPY--PSARLV 278 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g--~~~~~~pdGia~d~~g~-l~va~~~~--~~~~v~ 278 (335)
..|.|++++|+| .+|+++..++.|..+|.++. .+.. ...+ -.....|.+++++++|. +||++..+ +.+.++
T Consensus 160 ~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~--~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~i 236 (381)
T COG3391 160 NTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGN--SVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKI 236 (381)
T ss_pred CCcceEEECCCCCeEEEEecCCCeEEEEeCCCc--ceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEE
Confidence 357999999999 79999999999999998876 2321 1100 11236799999999985 99997754 466666
Q ss_pred EcCCCcEEEEEeeeecCCCCCcceEEEEe--CCeEEEE
Q 039428 279 ESSDGWETASVVAKFNGPTHRVATAATVK--DGRVYLS 314 (335)
Q Consensus 279 ~~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~ 314 (335)
+...+..... .+....+ .|.++++. +..+||.
T Consensus 237 d~~~~~v~~~---~~~~~~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 237 DTATGNVTAT---DLPVGSG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred eCCCceEEEe---ccccccC-CCCceeECCCCCEEEEE
Confidence 6654422111 1212223 56677773 6667775
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-11 Score=110.22 Aligned_cols=208 Identities=19% Similarity=0.258 Sum_probs=129.7
Q ss_pred CcceEEEeCCCCeEEEEEecCCC---------CccceEEEEECCCCeEEEEeecCCCc-cCCCCCCceeECCC------C
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLG---------NKYSALAAYDLSTWKRLFLTQLSGKS-EEKSTADDIAVDAE------G 165 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~---------~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~p~~~~vd~~------G 165 (335)
+..++.+|+ .|+|||. |.+. ....+|+.||+++++++..+.++... .+.++.++++||.. +
T Consensus 2 sV~~v~iD~-~~rLWVl--D~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~ 78 (287)
T PF03022_consen 2 SVQRVQIDE-CGRLWVL--DSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDG 78 (287)
T ss_dssp -EEEEEE-T-TSEEEEE--E-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SE
T ss_pred cccEEEEcC-CCCEEEE--eCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcce
Confidence 456899995 9999995 5441 11257999999999988777775322 23678999999973 4
Q ss_pred cEEEEeCCCCeEEEEccCCc-EEEEecCCccc-ccc---------ccccccccCeEEEcc---CC-eEEEEECCCCEEEE
Q 039428 166 NAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFT-AKE---------WYKNVFGLNGIVYHP---DG-FLIVIHMCSGNLFK 230 (335)
Q Consensus 166 ~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~-~~~---------~~~~~~~p~Gia~~~---dg-~Lyvad~~~~~v~~ 230 (335)
.+|++|...+.|.++|.... ..+++.. .+. .|. .-....+..||++++ +| +||+....+.++|+
T Consensus 79 ~aYItD~~~~glIV~dl~~~~s~Rv~~~-~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~ 157 (287)
T PF03022_consen 79 FAYITDSGGPGLIVYDLATGKSWRVLHN-SFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYR 157 (287)
T ss_dssp EEEEEETTTCEEEEEETTTTEEEEEETC-GCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEE
T ss_pred EEEEeCCCcCcEEEEEccCCcEEEEecC-CcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEE
Confidence 69999999999999998754 4444432 222 111 001112478889977 66 89999999999999
Q ss_pred EeCCCC---c----e----eEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCC-C
Q 039428 231 IDIRKE---E----E----EVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPT-H 298 (335)
Q Consensus 231 ~d~~~~---~----~----~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~-~ 298 (335)
++.+-- . . .++.+ |++ ....+|+++|++|+||++.-..++|........+......--...+. .
T Consensus 158 v~T~~L~~~~~~~~~~~~~~v~~l---G~k-~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l 233 (287)
T PF03022_consen 158 VPTSVLRDPSLSDAQALASQVQDL---GDK-GSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTL 233 (287)
T ss_dssp EEHHHHCSTT--HHH-HHHT-EEE---EE----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-G
T ss_pred EEHHHhhCccccccccccccceec---ccc-CCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCcee
Confidence 987531 0 0 12222 211 12368999999999999977667887777654332111111122455 7
Q ss_pred CcceEEEEeC---CeEEE-Eecc
Q 039428 299 RVATAATVKD---GRVYL-SHLL 317 (335)
Q Consensus 299 ~~Pt~va~~~---g~lyV-~~~~ 317 (335)
.+|.++.++. |+||| ++++
T Consensus 234 ~~pd~~~i~~~~~g~L~v~snrl 256 (287)
T PF03022_consen 234 QWPDGLKIDPEGDGYLWVLSNRL 256 (287)
T ss_dssp SSEEEEEE-T--TS-EEEEE-S-
T ss_pred eccceeeeccccCceEEEEECcc
Confidence 8899999965 99998 5544
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.1e-11 Score=107.80 Aligned_cols=199 Identities=17% Similarity=0.120 Sum_probs=125.4
Q ss_pred CCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEe-ecCCcCCCCcceEEEeCCCCeEEEEEec----
Q 039428 47 PSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLV-KEDDVVGNATMGIAVDRPRNRLLVAFTD---- 121 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~-~~~~~~~~~p~Gi~~d~~~g~l~v~~~D---- 121 (335)
+...+.+..++.+|.+ +++.....++..+ .+.. ... +. ..++...++++...+++ +|++|+....
T Consensus 65 p~~~~~~~~~d~~g~L-v~~~~g~~~~~~~--~~~~----~t~--~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~ 134 (307)
T COG3386 65 PGGFSSGALIDAGGRL-IACEHGVRLLDPD--TGGK----ITL--LAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDL 134 (307)
T ss_pred CCCcccceeecCCCeE-EEEccccEEEecc--CCce----eEE--eccccCCCCcCCCCceeEcC-CCCEEEeCCCcccc
Confidence 3456778888877754 4442233333333 2331 111 21 12333347899999997 8999995433
Q ss_pred -CCC-CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCcEEEEecCC-cccc
Q 039428 122 -VLG-NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQLLSIIRSP-LFTA 197 (335)
Q Consensus 122 -~~~-~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~~~~~~-~~~~ 197 (335)
... .....|+++|+.++......+ ....||+|+++||| .+|++|+..++|++++.+-......+.. .+..
T Consensus 135 ~~~~~~~~G~lyr~~p~g~~~~l~~~------~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~ 208 (307)
T COG3386 135 GKSEERPTGSLYRVDPDGGVVRLLDD------DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDF 208 (307)
T ss_pred CccccCCcceEEEEcCCCCEEEeecC------cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEc
Confidence 111 112579999996554443322 16789999999999 6999999999999998762110000000 0000
Q ss_pred ccccccccccCeEEEccCCeEEEEECCC-CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCC--CcEEEEec
Q 039428 198 KEWYKNVFGLNGIVYHPDGFLIVIHMCS-GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSP--TKLVVAGN 270 (335)
Q Consensus 198 ~~~~~~~~~p~Gia~~~dg~Lyvad~~~-~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~--g~l~va~~ 270 (335)
......|.|+++|.+|+||++...+ ++|.++++++. ....+.++. ..|..+++-.. ..|||+..
T Consensus 209 ---~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~--l~~~i~lP~----~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 209 ---DEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGK--LLGEIKLPV----KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ---cCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCc--EEEEEECCC----CCCccceEeCCCcCEEEEEec
Confidence 0012459999999999999654444 49999999966 777777653 34778888754 57999865
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.2e-10 Score=103.12 Aligned_cols=260 Identities=13% Similarity=0.058 Sum_probs=144.5
Q ss_pred hhhhhcCCCceeE-EEcCCCcceeeeEEcCCCCEEEEE-e---------cCCeEEEEECCCCCCCcceeeeeEEeecCCc
Q 039428 30 LAIAMAKPATHVY-QYHSPSFLCETAKWDDVGRRFLVS-F---------LDGGVGQVLVPDEYSPGTVLEEVKLVKEDDV 98 (335)
Q Consensus 30 ~~~~~~d~~~~~~-~~~~~~~~pegia~d~~g~~~~~~-~---------~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~ 98 (335)
+.+.+.|..+.++ ..-..+..|.++ ++++|+.+|++ . .+..|.++|..+.+ ++.++..-..|.+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~----~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL----PIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc----EEeEEccCCCchh
Confidence 4566666655442 223346689996 99999999988 6 57899999976554 2333222122221
Q ss_pred -CCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeE
Q 039428 99 -VGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKI 177 (335)
Q Consensus 99 -~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I 177 (335)
.+..+..+++++++..|||.+.+.. +.|.++|.++++++..++.+. ...-....++.++..+--..-.-
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~----~~V~VvD~~~~kvv~ei~vp~------~~~vy~t~e~~~~~~~~Dg~~~~ 171 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPS----PAVGVVDLEGKAFVRMMDVPD------CYHIFPTANDTFFMHCRDGSLAK 171 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCC----CEEEEEECCCCcEEEEEeCCC------CcEEEEecCCccEEEeecCceEE
Confidence 2346779999986678999764422 469999999999886665522 11112222222222221111122
Q ss_pred EEEccCCcEEEEecCCccccccccccccccCeEEEcc-CC-eEEEEECCCCEEEEEeCCCCc-eeEEEEeccC--Cc-CC
Q 039428 178 WKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHP-DG-FLIVIHMCSGNLFKIDIRKEE-EEVKLIELRG--GS-SL 251 (335)
Q Consensus 178 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~-dg-~Lyvad~~~~~v~~~d~~~~~-~~~~~~~~~g--~~-~~ 251 (335)
+.++.+|+... -..+.|.. +..+-+..| .+.+ || .+|++.. |+|+.+|..+.+ .....+.... .. .-
T Consensus 172 v~~d~~g~~~~-~~~~vf~~-~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 172 VGYGTKGNPKI-KPTEVFHP-EDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADG 244 (352)
T ss_pred EEecCCCceEE-eeeeeecC-CccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccc
Confidence 23334444221 00011111 011122334 5566 77 7788766 999999976652 0112222111 00 00
Q ss_pred CCCCe---EEEcCCC-cEEEEe-c--------CCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe--CC-eEEEEe
Q 039428 252 SLGDG---LALLSPT-KLVVAG-N--------PYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK--DG-RVYLSH 315 (335)
Q Consensus 252 ~~pdG---ia~d~~g-~l~va~-~--------~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g-~lyV~~ 315 (335)
-.|.| ++++++| ++||+. . +++.+++++...+ ++..++. .+..|.++++. +. .||+++
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~----kvi~~i~--vG~~~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG----KRLRKIE--LGHEIDSINVSQDAKPLLYALS 318 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC----eEEEEEe--CCCceeeEEECCCCCeEEEEeC
Confidence 13555 9999886 799952 2 2267899887543 4455543 34457889994 56 788866
Q ss_pred cc
Q 039428 316 LL 317 (335)
Q Consensus 316 ~~ 317 (335)
..
T Consensus 319 ~~ 320 (352)
T TIGR02658 319 TG 320 (352)
T ss_pred CC
Confidence 43
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.9e-10 Score=99.39 Aligned_cols=220 Identities=15% Similarity=0.142 Sum_probs=139.4
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.+..++++++|+.+|++ ..+++|..+|..+.+ .+. .+ +. +..+.++++++ ++.++++..+. . .
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~----~~~---~~--~~--~~~~~~~~~~~-dg~~l~~~~~~-~---~ 137 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRK----VLA---EI--PV--GVEPEGMAVSP-DGKIVVNTSET-T---N 137 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCe----EEe---Ee--eC--CCCcceEEECC-CCCEEEEEecC-C---C
Confidence 46788999999988777 557899999964332 111 11 11 12568999997 56555543322 1 2
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcE-EEEecCCccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~~~~~~~~~ 206 (335)
.+..+|.++++....... ...|..++++++|. +|++....+.|+.+|.+... ...+. +..++..+....
T Consensus 138 ~~~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~---~~~~~~~~~~~~ 208 (300)
T TIGR03866 138 MAHFIDTKTYEIVDNVLV------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT---FEIPGVHPEAVQ 208 (300)
T ss_pred eEEEEeCCCCeEEEEEEc------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee---ecccccccccCC
Confidence 467789887766532221 23567899999986 66776667899999987543 22221 111111112234
Q ss_pred cCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcCCCc
Q 039428 207 LNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESSDGW 284 (335)
Q Consensus 207 p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~~~~ 284 (335)
|.+++++++| .+|++...+++|.++|.+..+ ....+. .+ ..+.++++.++|. ||+++..++.+.+++...+
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~-~~~~~~-~~----~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~- 281 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYE-VLDYLL-VG----QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL- 281 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCc-EEEEEE-eC----CCcceEEECCCCCEEEEEcCCCCeEEEEECCCC-
Confidence 7899999999 778888888899999998763 333332 22 2488999999986 5555444577888887654
Q ss_pred EEEEEeeeecCCCCCcceEEEE
Q 039428 285 ETASVVAKFNGPTHRVATAATV 306 (335)
Q Consensus 285 ~~~~~~~~~~~p~~~~Pt~va~ 306 (335)
+.+.++. .+..|.++++
T Consensus 282 ---~~~~~~~--~~~~~~~~~~ 298 (300)
T TIGR03866 282 ---KVIKSIK--VGRLPWGVVV 298 (300)
T ss_pred ---cEEEEEE--cccccceeEe
Confidence 3333332 2344677765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.1e-09 Score=95.33 Aligned_cols=227 Identities=15% Similarity=0.098 Sum_probs=139.9
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.|.+++|+++|+.+|++ ..++.|..+|..+++ ++. .+ +. +..+..++++++++.+|+++.+. .
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~----~~~---~~--~~--~~~~~~~~~~~~g~~l~~~~~~~-----~ 95 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE----VIG---TL--PS--GPDPELFALHPNGKILYIANEDD-----N 95 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCc----EEE---ec--cC--CCCccEEEECCCCCEEEEEcCCC-----C
Confidence 47889999999977665 667899999965443 111 12 11 12356788988556677753221 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-CCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
.|..||+++++....... ...+++++++++|.++++... ...++.+|.++..... ... ....|
T Consensus 96 ~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~----~~~------~~~~~ 159 (300)
T TIGR03866 96 LVTVIDIETRKVLAEIPV------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD----NVL------VDQRP 159 (300)
T ss_pred eEEEEECCCCeEEeEeeC------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE----EEE------cCCCc
Confidence 599999988765533322 235788999999986665444 3456677876433221 000 11247
Q ss_pred CeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEecc--CCc-CCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcCC
Q 039428 208 NGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELR--GGS-SLSLGDGLALLSPTK-LVVAGNPYPSARLVESSD 282 (335)
Q Consensus 208 ~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~--g~~-~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~~ 282 (335)
+.++++++| .||++....++|..+|+...+ ....+... +.. ....|.+++++++|+ +|++....+.+.+++...
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRK-VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcce-eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 889999999 677776678899999998763 33433321 100 012477899999986 577754446788887654
Q ss_pred CcEEEEEeeeecCCCCCcceEEEEe--CCeEEEEe
Q 039428 283 GWETASVVAKFNGPTHRVATAATVK--DGRVYLSH 315 (335)
Q Consensus 283 ~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~ 315 (335)
+ +. ...+. ....|.++++. +..||++.
T Consensus 239 ~-~~---~~~~~--~~~~~~~~~~~~~g~~l~~~~ 267 (300)
T TIGR03866 239 Y-EV---LDYLL--VGQRVWQLAFTPDEKYLLTTN 267 (300)
T ss_pred C-cE---EEEEE--eCCCcceEEECCCCCEEEEEc
Confidence 3 22 22211 12235677773 55677653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.4e-09 Score=97.82 Aligned_cols=253 Identities=17% Similarity=0.220 Sum_probs=143.4
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC---CCCcceEEEeC---CCCeEEEEEecC-
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV---GNATMGIAVDR---PRNRLLVAFTDV- 122 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~---~~~p~Gi~~d~---~~g~l~v~~~D~- 122 (335)
.|.++++.|+|++|+... .|+|++++ .++... . .+...+... .....||+++| .++.||++....
T Consensus 3 ~P~~~a~~pdG~l~v~e~-~G~i~~~~-~~g~~~----~--~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~ 74 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAER-SGRIWVVD-KDGSLK----T--PVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNAD 74 (331)
T ss_dssp SEEEEEEETTSCEEEEET-TTEEEEEE-TTTEEC----E--EEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-
T ss_pred CceEEEEeCCCcEEEEeC-CceEEEEe-CCCcCc----c--eecccccccccccCCcccceeccccCCCCEEEEEEEccc
Confidence 589999999998766554 99999998 455410 1 122222211 14579999997 258999976521
Q ss_pred --CCCccceEEEEECCCC--eE---E-EEeecCCCccCCCCCCceeECCCCcEEEEeC-------------CCCeEEEEc
Q 039428 123 --LGNKYSALAAYDLSTW--KR---L-FLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-------------VSSKIWKVG 181 (335)
Q Consensus 123 --~~~~~~~v~~~d~~~~--~~---~-~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-------------~~~~I~~~d 181 (335)
......+|.++..+.+ .+ . .....+......+.-..|+++|||.|||+-. ..+.|+|++
T Consensus 75 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~ 154 (331)
T PF07995_consen 75 EDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRID 154 (331)
T ss_dssp TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEE
T ss_pred CCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEec
Confidence 1122256888776544 11 1 1112211112245567799999999999731 368999999
Q ss_pred cCCcEEEEecCCcccc----cc-ccccccccCeEEEccC-CeEEEEECCC---CEEEEEeCCCC------c------ee-
Q 039428 182 VEGQLLSIIRSPLFTA----KE-WYKNVFGLNGIVYHPD-GFLIVIHMCS---GNLFKIDIRKE------E------EE- 239 (335)
Q Consensus 182 ~~g~~~~~~~~~~~~~----~~-~~~~~~~p~Gia~~~d-g~Lyvad~~~---~~v~~~d~~~~------~------~~- 239 (335)
++|+... .++.+.. .+ ....+.+|.+++++|. |.||++|.+. ..|.++..... . +.
T Consensus 155 ~dG~~p~--dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~ 232 (331)
T PF07995_consen 155 PDGSIPA--DNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPP 232 (331)
T ss_dssp TTSSB-T--TSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-
T ss_pred ccCcCCC--CCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCc
Confidence 9987422 1111110 01 2235667999999998 8999999764 46777754332 0 00
Q ss_pred -----------EEEEeccCCcCCCCCCeEEEcC-------CCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcc
Q 039428 240 -----------VKLIELRGGSSLSLGDGLALLS-------PTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVA 301 (335)
Q Consensus 240 -----------~~~~~~~g~~~~~~pdGia~d~-------~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~P 301 (335)
.-.+.... -..|.|+.+-. +|.+++++.+...++.+..+++....+ ...+-......|
T Consensus 233 ~~~~~~~~~~~~P~~~~~~---~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~r~ 308 (331)
T PF07995_consen 233 IGDAPSCPGFVPPVFAYPP---HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTE-EEEFLGGFGGRP 308 (331)
T ss_dssp ECTGSS-TTS---SEEETT---T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEE-EEEECTTSSS-E
T ss_pred cccccCCCCcCccceeecC---ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccc-eEEccccCCCCc
Confidence 00001111 13578888763 367999988667888888765533222 222222333357
Q ss_pred eEEEEe-CCeEEEEec
Q 039428 302 TAATVK-DGRVYLSHL 316 (335)
Q Consensus 302 t~va~~-~g~lyV~~~ 316 (335)
.++++. +|+|||++.
T Consensus 309 ~~v~~~pDG~Lyv~~d 324 (331)
T PF07995_consen 309 RDVAQGPDGALYVSDD 324 (331)
T ss_dssp EEEEEETTSEEEEEE-
T ss_pred eEEEEcCCCeEEEEEC
Confidence 899997 999999765
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-08 Score=90.82 Aligned_cols=247 Identities=14% Similarity=0.184 Sum_probs=149.7
Q ss_pred cceeeeEEcCCCCEEEEE-ec--CCe--EEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC
Q 039428 49 FLCETAKWDDVGRRFLVS-FL--DGG--VGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~--~~~--I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
-.|.=++|+++++.+|+. .. .+. -++||+.+|+ ++ ++......+..|.-+++|+++..||++ ...
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~-----Lt---~ln~~~~~g~~p~yvsvd~~g~~vf~A--nY~ 109 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGR-----LT---FLNRQTLPGSPPCYVSVDEDGRFVFVA--NYH 109 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCe-----EE---EeeccccCCCCCeEEEECCCCCEEEEE--Ecc
Confidence 357889999999888887 43 354 4677754465 22 443333344567899999743456664 333
Q ss_pred CCccceEEEEECCC-CeEEEE----eec-CC--CccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCCc
Q 039428 124 GNKYSALAAYDLST-WKRLFL----TQL-SG--KSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPL 194 (335)
Q Consensus 124 ~~~~~~v~~~d~~~-~~~~~~----~~~-~~--~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~ 194 (335)
. +.|.++-.+. |.+... .+. .+ +.+....+.-..++|+|+ ++++|-...+|+.++.+...+.... +.
T Consensus 110 ~---g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~-~~ 185 (346)
T COG2706 110 S---GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPAD-PA 185 (346)
T ss_pred C---ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccc-cc
Confidence 2 3466655532 433211 111 11 112234467788999995 8889999999999887633322111 11
Q ss_pred cccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCc---eeEEEEeccCCcCC---CCCCeEEEcCCCc-EE
Q 039428 195 FTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEE---EEVKLIELRGGSSL---SLGDGLALLSPTK-LV 266 (335)
Q Consensus 195 ~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~---~~~~~~~~~g~~~~---~~pdGia~d~~g~-l~ 266 (335)
+.+ .+.+|.-|+|.|+| ..|+...-+++|.++..+... ..++.+..-... + ...-.|.+.++|+ ||
T Consensus 186 ~v~-----~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d-F~g~~~~aaIhis~dGrFLY 259 (346)
T COG2706 186 EVK-----PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED-FTGTNWAAAIHISPDGRFLY 259 (346)
T ss_pred ccC-----CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc-cCCCCceeEEEECCCCCEEE
Confidence 112 35789999999999 889999999999888887741 134444321111 2 2234567789996 88
Q ss_pred EEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe-CC-eEEEEec
Q 039428 267 VAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK-DG-RVYLSHL 316 (335)
Q Consensus 267 va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~-~g-~lyV~~~ 316 (335)
++|.+.++++++..++.....+..+... -.++.|-...+. +| -|+++..
T Consensus 260 asNRg~dsI~~f~V~~~~g~L~~~~~~~-teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 260 ASNRGHDSIAVFSVDPDGGKLELVGITP-TEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred EecCCCCeEEEEEEcCCCCEEEEEEEec-cCCcCCccceeCCCCCEEEEEcc
Confidence 8888889999988765422233333321 134556677774 44 4555443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-09 Score=103.63 Aligned_cols=162 Identities=21% Similarity=0.270 Sum_probs=104.6
Q ss_pred EeecCCcCCCCcceEEEeCCCCeEEEEEecCC-------CCccceEEEEECCC--CeEEEEeecCCCccCCCCCCceeEC
Q 039428 92 LVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL-------GNKYSALAAYDLST--WKRLFLTQLSGKSEEKSTADDIAVD 162 (335)
Q Consensus 92 ~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~-------~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~p~~~~vd 162 (335)
+.+.|.+ ..|.+|++|+ +|+|||+..... .....+|++++... |+......+ .++...|+++++.
T Consensus 7 ~A~~p~~--~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf---a~~l~~p~Gi~~~ 80 (367)
T TIGR02604 7 FAAEPLL--RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF---AEELSMVTGLAVA 80 (367)
T ss_pred EECCCcc--CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe---ecCCCCccceeEe
Confidence 4444544 3789999996 899999632110 01112688887542 222111111 1226789999999
Q ss_pred CCCcEEEEeCCCCeEEEE-ccCC------cEEEEecCCccccccccccccccCeEEEccCCeEEEEECC-----------
Q 039428 163 AEGNAYVTDVVSSKIWKV-GVEG------QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC----------- 224 (335)
Q Consensus 163 ~~G~lyV~d~~~~~I~~~-d~~g------~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~----------- 224 (335)
++| +||++ ...|+++ +.++ +...++. .+.... ......++++++.|||+||+++..
T Consensus 81 ~~G-lyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~--~~~~~~-~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~ 154 (367)
T TIGR02604 81 VGG-VYVAT--PPDILFLRDKDGDDKADGEREVLLS--GFGGQI-NNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGT 154 (367)
T ss_pred cCC-EEEeC--CCeEEEEeCCCCCCCCCCccEEEEE--ccCCCC-CcccccccCceECCCCCEEEecccCCCceeccCCC
Confidence 999 99986 4479988 4443 2222221 121100 001345999999999999998762
Q ss_pred --------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC
Q 039428 225 --------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP 271 (335)
Q Consensus 225 --------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~ 271 (335)
.+.|+|+++++. ..+.+.. | +..|.|++++++|++|++++.
T Consensus 155 ~~~~~~~~~g~i~r~~pdg~--~~e~~a~-G---~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 155 SDESRQGLGGGLFRYNPDGG--KLRVVAH-G---FQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred ccCcccccCceEEEEecCCC--eEEEEec-C---cCCCccceECCCCCEEEEccC
Confidence 267999999987 5666652 3 577999999999999999763
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.5e-08 Score=92.26 Aligned_cols=262 Identities=20% Similarity=0.215 Sum_probs=142.6
Q ss_pred hhhhhhhhhcCCCceeE--EEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCc
Q 039428 26 ISIELAIAMAKPATHVY--QYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNAT 103 (335)
Q Consensus 26 ~~~~~~~~~~d~~~~~~--~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p 103 (335)
....+.+++.|..+.++ .++.....+.+++++++|+.+|+...++.|.++|..+.+ ++.+ +. .|..|
T Consensus 12 ~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~----~v~~---i~----~G~~~ 80 (369)
T PF02239_consen 12 ERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK----VVAT---IK----VGGNP 80 (369)
T ss_dssp EGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS----EEEE---EE-----SSEE
T ss_pred ecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc----EEEE---Ee----cCCCc
Confidence 34556677777765432 233333346778899999988888778999999976554 3332 21 23478
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCcc--CCCCCCceeECCCCcEE-EEeCCCCeEEEE
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSE--EKSTADDIAVDAEGNAY-VTDVVSSKIWKV 180 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~p~~~~vd~~G~ly-V~d~~~~~I~~~ 180 (335)
.|+++++++..+|+++... +.+.++|.++.+++..++...... ...++.++...+....| ++-...++|+.+
T Consensus 81 ~~i~~s~DG~~~~v~n~~~-----~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEP-----GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp EEEEE--TTTEEEEEEEET-----TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred ceEEEcCCCCEEEEEecCC-----CceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 9999998556677765433 469999999988775554321110 13455567777777645 455678999999
Q ss_pred ccCC-cEE--EEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEec-----------
Q 039428 181 GVEG-QLL--SIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIEL----------- 245 (335)
Q Consensus 181 d~~g-~~~--~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~----------- 245 (335)
|... +.. +.+. ....|++..++|+| +++++...+++|..+|....+ .+..++.
T Consensus 156 dy~d~~~~~~~~i~-----------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k-~v~~i~~g~~p~~~~~~~ 223 (369)
T PF02239_consen 156 DYSDPKNLKVTTIK-----------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK-LVALIDTGKKPHPGPGAN 223 (369)
T ss_dssp ETTTSSCEEEEEEE-------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE-EEEEEE-SSSBEETTEEE
T ss_pred Eeccccccceeeec-----------ccccccccccCcccceeeecccccceeEEEeeccce-EEEEeecccccccccccc
Confidence 9543 222 1111 12348899999999 778887777888888877652 1111110
Q ss_pred ------------c----------CCc-----------------CCCCCCeEEEcCCC-cEEEE---ecCCCeEEEEEcCC
Q 039428 246 ------------R----------GGS-----------------SLSLGDGLALLSPT-KLVVA---GNPYPSARLVESSD 282 (335)
Q Consensus 246 ------------~----------g~~-----------------~~~~pdGia~d~~g-~l~va---~~~~~~~~v~~~~~ 282 (335)
. |.. ..+.|-.+...|++ .+||. +...+.+.|++..+
T Consensus 224 ~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 224 FPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred ccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence 0 000 01234566667776 57777 33345678887654
Q ss_pred CcEEEEEeeeec-CCCCCcceEEEEe--CCeEEEEeccCCC
Q 039428 283 GWETASVVAKFN-GPTHRVATAATVK--DGRVYLSHLLGLG 320 (335)
Q Consensus 283 ~~~~~~~~~~~~-~p~~~~Pt~va~~--~g~lyV~~~~~~~ 320 (335)
- ++...+. ++. ..+..+.+. +.++||+.+...|
T Consensus 304 l----~~~~~i~~~~~-~~~~h~ef~~dG~~v~vS~~~~~~ 339 (369)
T PF02239_consen 304 L----KVVKTITPGPG-KRVVHMEFNPDGKEVWVSVWDGNG 339 (369)
T ss_dssp T----EEEE-HHHHHT---EEEEEE-TTSSEEEEEEE--TT
T ss_pred c----ceeEEEeccCC-CcEeccEECCCCCEEEEEEecCCC
Confidence 3 3333332 111 114456663 7789998887664
|
... |
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-08 Score=99.88 Aligned_cols=244 Identities=17% Similarity=0.166 Sum_probs=154.4
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
+.|-.+|..+||.+|+-+ -+-|.|+. ++|+. .. .+......-..-.=|+++|-+|.||| .|...+
T Consensus 365 ~aPvala~a~DGSl~VGD--fNyIRRI~-~dg~v----~t---Il~L~~t~~sh~Yy~AvsPvdgtlyv--Sdp~s~--- 429 (1899)
T KOG4659|consen 365 FAPVALAYAPDGSLIVGD--FNYIRRIS-QDGQV----ST---ILTLGLTDTSHSYYIAVSPVDGTLYV--SDPLSK--- 429 (1899)
T ss_pred eceeeEEEcCCCcEEEcc--chheeeec-CCCce----EE---EEEecCCCccceeEEEecCcCceEEe--cCCCcc---
Confidence 368899999999988775 46788996 56772 22 22211100013467999998999999 676544
Q ss_pred eEEEEEC-CC-----C-eEEEE---eecCCC----------ccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEE
Q 039428 129 ALAAYDL-ST-----W-KRLFL---TQLSGK----------SEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLS 188 (335)
Q Consensus 129 ~v~~~d~-~~-----~-~~~~~---~~~~~~----------~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~ 188 (335)
+|+++.- +. + +++.+ .+++.. .....+|.|++||.+|++|++|.. +|.++|.+|-...
T Consensus 430 qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t--~IR~iD~~giIst 507 (1899)
T KOG4659|consen 430 QVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT--RIRVIDTTGIIST 507 (1899)
T ss_pred eEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc--EEEEeccCceEEE
Confidence 4777632 11 1 12211 011110 012689999999999999999865 8999999998877
Q ss_pred EecCCccc-cc--c------ccccccccCeEEEcc-CCeEEEEECCCCEEEEEeCCCCceeEEEEec-------cC-C--
Q 039428 189 IIRSPLFT-AK--E------WYKNVFGLNGIVYHP-DGFLIVIHMCSGNLFKIDIRKEEEEVKLIEL-------RG-G-- 248 (335)
Q Consensus 189 ~~~~~~~~-~~--~------~~~~~~~p~Gia~~~-dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~-------~g-~-- 248 (335)
++++.... +| + ..-++.=|..+|++| |+.|||-| ++-|++++.+.. +.++.. .+ .
T Consensus 508 lig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~r---V~Ii~GrP~hC~~a~~t~~ 582 (1899)
T KOG4659|consen 508 LIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHR---VRIILGRPTHCDLANATSS 582 (1899)
T ss_pred eccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccCcc---EEEEcCCccccccCCCchh
Confidence 77652111 11 1 112333499999999 88999986 677899988875 233321 11 0
Q ss_pred -------cCCCCCCeEEEcCCCcEEEEecCC---CeEEEEEcCCCcEEEEEeee--------------ec-------CCC
Q 039428 249 -------SSLSLGDGLALLSPTKLVVAGNPY---PSARLVESSDGWETASVVAK--------------FN-------GPT 297 (335)
Q Consensus 249 -------~~~~~pdGia~d~~g~l~va~~~~---~~~~v~~~~~~~~~~~~~~~--------------~~-------~p~ 297 (335)
..+-.+..|++..+|.|||++... |+++++.. ++ +..-+.+- ++ ...
T Consensus 583 ~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~t-dg-~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~ 660 (1899)
T KOG4659|consen 583 ASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLST-DG-TISILAGAKSPCSCDVAACCDCFSLRDVAATQAK 660 (1899)
T ss_pred hhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEecc-Cc-eEEEecCCCCCCCcccccCCccccccchhhhccc
Confidence 012357899999999999996633 55665543 22 22111110 11 123
Q ss_pred CCcceEEEEe-CCeEEEEec
Q 039428 298 HRVATAATVK-DGRVYLSHL 316 (335)
Q Consensus 298 ~~~Pt~va~~-~g~lyV~~~ 316 (335)
++.|.++|+. +|.+||++.
T Consensus 661 lnsp~alaVsPdg~v~IAD~ 680 (1899)
T KOG4659|consen 661 LNSPYALAVSPDGDVIIADS 680 (1899)
T ss_pred cCCcceEEECCCCcEEEecC
Confidence 7788999996 999999764
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.14 E-value=8e-08 Score=89.18 Aligned_cols=205 Identities=17% Similarity=0.192 Sum_probs=116.4
Q ss_pred cceeeeEEcCCCCEEEEE-ec-CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 49 FLCETAKWDDVGRRFLVS-FL-DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~-~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
..|+..+++++|+.+|+. .. .+.|.++|...++ ++.+ +.-|+ +....... +++.... +.|..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k----vv~e---i~vp~----~~~vy~t~-e~~~~~~-~~Dg~--- 168 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA----FVRM---MDVPD----CYHIFPTA-NDTFFMH-CRDGS--- 168 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCc----EEEE---EeCCC----CcEEEEec-CCccEEE-eecCc---
Confidence 356699999999988887 44 7899999975444 3432 22232 23333333 2333333 25543
Q ss_pred cceEEEEECCCCeEEEEeec-CCCcc-CCCCCCceeECC-CCc-EEEEeCCCCeEEEEccCCcEEEE---ecCCccccc-
Q 039428 127 YSALAAYDLSTWKRLFLTQL-SGKSE-EKSTADDIAVDA-EGN-AYVTDVVSSKIWKVGVEGQLLSI---IRSPLFTAK- 198 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~-~~~~~-~~~~p~~~~vd~-~G~-lyV~d~~~~~I~~~d~~g~~~~~---~~~~~~~~~- 198 (335)
..-..+|.++........+ ..... -+..| .+.+ +|+ +||+.. |.|+.+|..+..... +....+..+
T Consensus 169 -~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~ 242 (352)
T TIGR02658 169 -LAKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKA 242 (352)
T ss_pred -eEEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccc
Confidence 1223344333311111111 00000 03455 3344 665 777654 999999965543221 111111111
Q ss_pred -cccccccccCeEEEccCC-eEEEEE---------CCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc--E
Q 039428 199 -EWYKNVFGLNGIVYHPDG-FLIVIH---------MCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK--L 265 (335)
Q Consensus 199 -~~~~~~~~p~Gia~~~dg-~Lyvad---------~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~--l 265 (335)
++.+. +...+++++|| +|||+. ...++|++||..+.+ ....+.+ | ..|.+|++.+||+ |
T Consensus 243 ~~wrP~--g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k-vi~~i~v-G----~~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 243 DGWRPG--GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK-RLRKIEL-G----HEIDSINVSQDAKPLL 314 (352)
T ss_pred cccCCC--cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe-EEEEEeC-C----CceeeEEECCCCCeEE
Confidence 11121 22339999998 999953 233799999999875 5566665 4 2499999999975 6
Q ss_pred EEEecCCCeEEEEEcCCC
Q 039428 266 VVAGNPYPSARLVESSDG 283 (335)
Q Consensus 266 ~va~~~~~~~~v~~~~~~ 283 (335)
|+++..++.+.|++...+
T Consensus 315 yvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 315 YALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEeCCCCCcEEEEECcCC
Confidence 777766688999987654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.7e-08 Score=84.54 Aligned_cols=208 Identities=16% Similarity=0.176 Sum_probs=109.6
Q ss_pred EEcCCCcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEec
Q 039428 43 QYHSPSFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD 121 (335)
Q Consensus 43 ~~~~~~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D 121 (335)
.+++...-+.|++|+|+.+.+|+. -..+.|++++. +|+ ++.+ +...+. .-+.||++-. ++.+.++ .+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~----vlr~---i~l~g~--~D~EgI~y~g-~~~~vl~-~E 83 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGK----VLRR---IPLDGF--GDYEGITYLG-NGRYVLS-EE 83 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T------EEEE---EE-SS---SSEEEEEE-S-TTEEEEE-ET
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCC----EEEE---EeCCCC--CCceeEEEEC-CCEEEEE-Ec
Confidence 344444458999999986655555 66789999985 576 3442 223332 3578999973 5655552 32
Q ss_pred CCCCccceEEEEECC--CCeEE----EEeecCCCccCCCCCCceeECCC-CcEEEEeCCC-CeEEEEcc--CCcEEEEec
Q 039428 122 VLGNKYSALAAYDLS--TWKRL----FLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVS-SKIWKVGV--EGQLLSIIR 191 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~--~~~~~----~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~-~~I~~~d~--~g~~~~~~~ 191 (335)
.. ..++.++.. +..+. ....+.....+.....|++.|+. +++|++-... ..|+.++. .+.......
T Consensus 84 r~----~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 84 RD----QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp TT----TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred CC----CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 22 357777662 22211 11222222222355789999997 5788875543 46888876 222222111
Q ss_pred CCccccccccccccccCeEEEccC-CeEEEEECCCCEEEEEeCCCCceeEEEEeccCC-----cCCCCCCeEEEcCCCcE
Q 039428 192 SPLFTAKEWYKNVFGLNGIVYHPD-GFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGG-----SSLSLGDGLALLSPTKL 265 (335)
Q Consensus 192 ~~~~~~~~~~~~~~~p~Gia~~~d-g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~-----~~~~~pdGia~d~~g~l 265 (335)
...+. ........+.+++++|. |+||+-...+++|..+|.++. .+....+..+ ..+..|.||++|++|+|
T Consensus 160 ~~~~~--~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~--~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L 235 (248)
T PF06977_consen 160 DQDLD--DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR--VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL 235 (248)
T ss_dssp -HHHH---HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--E
T ss_pred ccccc--cccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC--EEEEEEeCCcccCcccccCCccEEEECCCCCE
Confidence 10000 00112234899999995 599999999999999998876 6666665431 12467999999999999
Q ss_pred EEEec
Q 039428 266 VVAGN 270 (335)
Q Consensus 266 ~va~~ 270 (335)
||++-
T Consensus 236 YIvsE 240 (248)
T PF06977_consen 236 YIVSE 240 (248)
T ss_dssp EEEET
T ss_pred EEEcC
Confidence 99964
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-08 Score=89.35 Aligned_cols=200 Identities=15% Similarity=0.161 Sum_probs=108.9
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d 181 (335)
.+.||++++++++||+++ |.. ..|+.++.+ |+++..+++.+ +.-+.+|++-.+|.+.+++...+++++++
T Consensus 23 e~SGLTy~pd~~tLfaV~-d~~----~~i~els~~-G~vlr~i~l~g----~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQ-DEP----GEIYELSLD-GKVLRRIPLDG----FGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp -EEEEEEETTTTEEEEEE-TTT----TEEEEEETT---EEEEEE-SS-----SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred CccccEEcCCCCeEEEEE-CCC----CEEEEEcCC-CCEEEEEeCCC----CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 478999999889999874 432 469999986 56766666632 56688999998898888998889999887
Q ss_pred cC--CcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCC-CEEEEEeC--CCCceeEEEEe---cc-CCcCC
Q 039428 182 VE--GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCS-GNLFKIDI--RKEEEEVKLIE---LR-GGSSL 251 (335)
Q Consensus 182 ~~--g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~-~~v~~~d~--~~~~~~~~~~~---~~-g~~~~ 251 (335)
.+ ++....-....+.-.-....-.+..|||+|+.+ +||++.-.. .+|+.++. ... ...... .. ....+
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGF--DLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS----EEEE-HHHH-HT--S
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcc--ceeecccccccccccee
Confidence 63 222111000011100001122457899999976 888775444 46888876 222 222221 11 11123
Q ss_pred CCCCeEEEcCC-CcEEEEecCCCeEEEEEcCCCcEEEE---EeeeecC--CCCCcceEEEEe-CCeEEEEe
Q 039428 252 SLGDGLALLSP-TKLVVAGNPYPSARLVESSDGWETAS---VVAKFNG--PTHRVATAATVK-DGRVYLSH 315 (335)
Q Consensus 252 ~~pdGia~d~~-g~l~va~~~~~~~~v~~~~~~~~~~~---~~~~~~~--p~~~~Pt~va~~-~g~lyV~~ 315 (335)
..|.++++++. |+||+-+..+..+.+++ ..++... +....++ ....+|-+||++ +|+|||++
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d--~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELD--RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE---TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEEC--CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 56899999987 68999977556554444 3322211 1111111 246789999997 89999954
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.7e-10 Score=82.75 Aligned_cols=70 Identities=19% Similarity=0.417 Sum_probs=54.5
Q ss_pred CceeECCC-CcEEEEeCC-----------------CCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-e
Q 039428 157 DDIAVDAE-GNAYVTDVV-----------------SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-F 217 (335)
Q Consensus 157 ~~~~vd~~-G~lyV~d~~-----------------~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~ 217 (335)
||+.|+++ |.+|+||+. +|+++++||.++..+++-+ .+..||||++++|+ .
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~----------~L~fpNGVals~d~~~ 70 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD----------GLYFPNGVALSPDESF 70 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE----------EESSEEEEEE-TTSSE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh----------CCCccCeEEEcCCCCE
Confidence 68999998 999999972 6999999999887765432 24469999999999 8
Q ss_pred EEEEECCCCEEEEEeCCCC
Q 039428 218 LIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 218 Lyvad~~~~~v~~~d~~~~ 236 (335)
|+|+++...||.|+.++++
T Consensus 71 vlv~Et~~~Ri~rywl~Gp 89 (89)
T PF03088_consen 71 VLVAETGRYRILRYWLKGP 89 (89)
T ss_dssp EEEEEGGGTEEEEEESSST
T ss_pred EEEEeccCceEEEEEEeCC
Confidence 9999999999999998863
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.4e-08 Score=93.07 Aligned_cols=194 Identities=19% Similarity=0.248 Sum_probs=120.8
Q ss_pred CCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCC
Q 039428 60 GRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW 138 (335)
Q Consensus 60 g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~ 138 (335)
++++++. ..+++|.++|..+.+ ++. .+.... ....++.+.+++..+||++.| +.|.++|+.++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~----~~~---~i~~~~---~~h~~~~~s~Dgr~~yv~~rd------g~vsviD~~~~ 68 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNK----VVA---RIPTGG---APHAGLKFSPDGRYLYVANRD------GTVSVIDLATG 68 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-S----EEE---EEE-ST---TEEEEEE-TT-SSEEEEEETT------SEEEEEETTSS
T ss_pred ccEEEEEecCCCEEEEEECCCCe----EEE---EEcCCC---CceeEEEecCCCCEEEEEcCC------CeEEEEECCcc
Confidence 5778777 778999999954333 233 221111 123457777755679997543 35999999999
Q ss_pred eEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccCeEEEccCC
Q 039428 139 KRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG 216 (335)
Q Consensus 139 ~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg 216 (335)
+++..+.. ...|.++++++||+ +|+++...+.+..+|.+. +.+..+........ .......+|..++..
T Consensus 69 ~~v~~i~~------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~---~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 69 KVVATIKV------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVD---GPESRVAAIVASPGR 139 (369)
T ss_dssp SEEEEEE-------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TT---TS---EEEEEE-SSS
T ss_pred cEEEEEec------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccccc---ccCCCceeEEecCCC
Confidence 88765554 35688999999996 899999999999999765 33333321111110 011235688888877
Q ss_pred e-EEEEECCCCEEEEEeCCCCce-eEEEEeccCCcCCCCCCeEEEcCCCcE-EEEecCCCeEEEEEcCCC
Q 039428 217 F-LIVIHMCSGNLFKIDIRKEEE-EVKLIELRGGSSLSLGDGLALLSPTKL-VVAGNPYPSARLVESSDG 283 (335)
Q Consensus 217 ~-Lyvad~~~~~v~~~d~~~~~~-~~~~~~~~g~~~~~~pdGia~d~~g~l-~va~~~~~~~~v~~~~~~ 283 (335)
. .+++-...++|+.+|....+. ....+.. + ..|.+..+|++|+. +++.+.++.+.+++...+
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~-g----~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV-G----RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSSCEEEEEEE-------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred CEEEEEEccCCeEEEEEeccccccceeeecc-c----ccccccccCcccceeeecccccceeEEEeeccc
Confidence 5 556777889999999877531 2233432 3 34889999999975 455666788888887655
|
... |
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-08 Score=99.67 Aligned_cols=197 Identities=20% Similarity=0.185 Sum_probs=140.9
Q ss_pred CcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 48 SFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
...+-||++|-..++.|++ +...+|.+-... |.-|. ..+ ..++ .+|.||++|--..++|- +|.-.++
T Consensus 1024 ~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~-G~Ep~------ti~-n~~L--~SPEGiAVDh~~Rn~yw--tDS~lD~ 1091 (1289)
T KOG1214|consen 1024 GSIIVGIDFDCRERMVYWTDVAGRSISRASLE-GAEPE------TIV-NSGL--ISPEGIAVDHIRRNMYW--TDSVLDK 1091 (1289)
T ss_pred cceeeeeecccccceEEEeecCCCcccccccc-CCCCc------eee-cccC--CCccceeeeeccceeee--eccccch
Confidence 3357899999988888887 888899998754 54221 122 2333 38999999965667777 4765554
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCC--CCeEEEEccCCcEEEEecCCcccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVV--SSKIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~--~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
-.+..+|-+-+++++..+ +-.|.+|++|+ .|+||.+|+. +..|-+.+.||+-.+++-+..
T Consensus 1092 -IevA~LdG~~rkvLf~td-------LVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~D--------- 1154 (1289)
T KOG1214|consen 1092 -IEVALLDGSERKVLFYTD-------LVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINTD--------- 1154 (1289)
T ss_pred -hheeecCCceeeEEEeec-------ccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeecc---------
Confidence 345556544444444333 56788999999 4799999986 678999999998777643322
Q ss_pred ccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 204 VFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
..-||||.|+|-. .|-..|.+++++--+.+++.+ .+.+ ..+ +.+|-++.-+.+ ++|-+++..|++..+..
T Consensus 1155 igLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~g--RR~i-~~~---LqYPF~itsy~~-~fY~TDWk~n~vvsv~~ 1225 (1289)
T KOG1214|consen 1155 IGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTG--RRVI-QNN---LQYPFSITSYAD-HFYHTDWKRNGVVSVNK 1225 (1289)
T ss_pred cCCCCCceeCcccceeeEEecCCcceeEecCCCCc--chhh-hhc---ccCceeeeeccc-cceeeccccCceEEeec
Confidence 2239999999966 788999999999999998862 2333 233 788999998876 49999997777655554
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.5e-07 Score=79.19 Aligned_cols=201 Identities=14% Similarity=0.162 Sum_probs=123.4
Q ss_pred eeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 51 CETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
-.+++|+|+.+.+|+. .....|.+++. +|. ++. .+...++ .-|.+|+.- +++.||. .|-.... -.
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~-~Gd----lir---tiPL~g~--~DpE~Ieyi--g~n~fvi-~dER~~~-l~ 153 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTK-EGD----LIR---TIPLTGF--SDPETIEYI--GGNQFVI-VDERDRA-LY 153 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEec-CCc----eEE---Eeccccc--CChhHeEEe--cCCEEEE-Eehhcce-EE
Confidence 4689999999988888 55578999984 676 233 2222332 367899987 4555665 3433222 22
Q ss_pred EEEEECCCCeEE---EEeecCCCccCCCCCCceeECCC-CcEEEEeCC-CCeEEEEccCCcEEEEecCCcccccccc--c
Q 039428 130 LAAYDLSTWKRL---FLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVV-SSKIWKVGVEGQLLSIIRSPLFTAKEWY--K 202 (335)
Q Consensus 130 v~~~d~~~~~~~---~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~-~~~I~~~d~~g~~~~~~~~~~~~~~~~~--~ 202 (335)
+..+|.++.... ..+.+.....+.....|++-|+. +++||+-.. .-+|++++..-+.... .....|... -
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~---~~~~~~~~~~~~ 230 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSV---HASLDPTADRDL 230 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccc---ccccCcccccce
Confidence 444555554332 12333222222456789999996 579998654 4578888743211111 000001000 0
Q ss_pred cccccCeEEEccC-CeEEEEECCCCEEEEEeCCCCceeEEEEec-cCCc----CCCCCCeEEEcCCCcEEEEec
Q 039428 203 NVFGLNGIVYHPD-GFLIVIHMCSGNLFKIDIRKEEEEVKLIEL-RGGS----SLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 203 ~~~~p~Gia~~~d-g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~-~g~~----~~~~pdGia~d~~g~l~va~~ 270 (335)
......|+.+++. ++|+|-...++.|..+|..+. ....+.+ .|.+ ..+.+.|+++|++|+||+++-
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~--~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE 302 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE--VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE 302 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecCCC--eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence 1223789999984 589988889999999999987 4544443 2222 236799999999999999944
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.4e-07 Score=79.54 Aligned_cols=194 Identities=20% Similarity=0.200 Sum_probs=119.9
Q ss_pred cCCCcceeeeEEcCCCCEEEEEec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 45 HSPSFLCETAKWDDVGRRFLVSFL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 45 ~~~~~~pegia~d~~g~~~~~~~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
+.+..+-+|+.+..+|.+|-.+.. ..+|.++|..+++ +..+ ...|... -..||++- +++||..+ .
T Consensus 41 Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~----~~~~---~~l~~~~--FgEGit~~--~d~l~qLT--W 107 (264)
T PF05096_consen 41 HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK----VLQS---VPLPPRY--FGEGITIL--GDKLYQLT--W 107 (264)
T ss_dssp --TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS----EEEE---EE-TTT----EEEEEEE--TTEEEEEE--S
T ss_pred CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc----EEEE---EECCccc--cceeEEEE--CCEEEEEE--e
Confidence 456678999999877877766632 3579999976665 2322 2223211 35799997 68999864 3
Q ss_pred CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCcccccccc
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWY 201 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~ 201 (335)
.. +..++||+++-+.......+ ..-+|++.|. ..+|+||. +.+|+.+||+.- ..+.+....-..
T Consensus 108 k~---~~~f~yd~~tl~~~~~~~y~------~EGWGLt~dg-~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~---- 172 (264)
T PF05096_consen 108 KE---GTGFVYDPNTLKKIGTFPYP------GEGWGLTSDG-KRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGR---- 172 (264)
T ss_dssp SS---SEEEEEETTTTEEEEEEE-S------SS--EEEECS-SCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTE----
T ss_pred cC---CeEEEEccccceEEEEEecC------CcceEEEcCC-CEEEEECC-ccceEEECCcccceEEEEEEEECCE----
Confidence 22 35899999988776444442 3457899653 36999986 679999999742 222221100000
Q ss_pred ccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccC-------Cc----CCCCCCeEEEcCC-CcEEEEe
Q 039428 202 KNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRG-------GS----SLSLGDGLALLSP-TKLVVAG 269 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g-------~~----~~~~pdGia~d~~-g~l~va~ 269 (335)
.....|-+-+- +|.||..-..+++|.+||+.+++ ....+++.+ .. ....-.|||.|++ +++||++
T Consensus 173 -pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~-V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 173 -PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK-VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp -E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B-EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred -ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe-EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 12347888887 89999999999999999999985 555554322 00 0234689999977 5899994
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-07 Score=83.69 Aligned_cols=204 Identities=18% Similarity=0.165 Sum_probs=120.7
Q ss_pred eeeeEEcCCCCEEEEEec------------CCeEEEEECCCCCCCcceeeeeEEeecCCcC---CCCcceEEEeCCC---
Q 039428 51 CETAKWDDVGRRFLVSFL------------DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV---GNATMGIAVDRPR--- 112 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~------------~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~---~~~p~Gi~~d~~~--- 112 (335)
..++.+|+.|++|+++.. ..+|+.||..+.+ ++. .+..|... ....+.+++|..+
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~----li~---~~~~p~~~~~~~s~lndl~VD~~~~~~ 75 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQ----LIR---RYPFPPDIAPPDSFLNDLVVDVRDGNC 75 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTC----EEE---EEE--CCCS-TCGGEEEEEEECTTTTS
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCc----EEE---EEECChHHcccccccceEEEEccCCCC
Confidence 357899999999999932 1489999975554 333 22333211 1245889999633
Q ss_pred --CeEEEEEecCCCCccceEEEEECCCCeEEEEeecC-CCc----------cC---CCCCCceeECC---CC-cEEEEeC
Q 039428 113 --NRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLS-GKS----------EE---KSTADDIAVDA---EG-NAYVTDV 172 (335)
Q Consensus 113 --g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~----------~~---~~~p~~~~vd~---~G-~lyV~d~ 172 (335)
+.+|+ +|.... .|.+||.++++.....+-. .+. .. .....+++.++ +| .+|+.--
T Consensus 76 ~~~~aYI--tD~~~~---glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~l 150 (287)
T PF03022_consen 76 DDGFAYI--TDSGGP---GLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPL 150 (287)
T ss_dssp -SEEEEE--EETTTC---EEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEET
T ss_pred cceEEEE--eCCCcC---cEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeC
Confidence 47888 676543 5999999998755332210 000 00 12244566654 55 4888876
Q ss_pred CCCeEEEEccC----CcEEEEe-cCCcccccccccc-ccccCeEEEccCCeEEEEECCCCEEEEEeCCCCc--eeEEEEe
Q 039428 173 VSSKIWKVGVE----GQLLSII-RSPLFTAKEWYKN-VFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEE--EEVKLIE 244 (335)
Q Consensus 173 ~~~~I~~~d~~----g~~~~~~-~~~~~~~~~~~~~-~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~--~~~~~~~ 244 (335)
.+..+|++... ....... ....+. ..+. .....|+++|++|.||+++...+.|.+.++++.- ...+.+.
T Consensus 151 ss~~ly~v~T~~L~~~~~~~~~~~~~~v~---~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~ 227 (287)
T PF03022_consen 151 SSRKLYRVPTSVLRDPSLSDAQALASQVQ---DLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILA 227 (287)
T ss_dssp T-SEEEEEEHHHHCSTT--HHH-HHHT-E---EEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEE
T ss_pred CCCcEEEEEHHHhhCccccccccccccce---eccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeE
Confidence 77788888643 1111000 000000 0011 1347999999999999999999999999999831 1444554
Q ss_pred ccCCcCCCCCCeEEEcC--CCcEEEEec
Q 039428 245 LRGGSSLSLGDGLALLS--PTKLVVAGN 270 (335)
Q Consensus 245 ~~g~~~~~~pdGia~d~--~g~l~va~~ 270 (335)
... ..+..|+++.++. +|.||+..+
T Consensus 228 ~d~-~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 228 QDP-RTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp E-C-C-GSSEEEEEE-T--TS-EEEEE-
T ss_pred EcC-ceeeccceeeeccccCceEEEEEC
Confidence 333 3378899999999 999999965
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-07 Score=97.24 Aligned_cols=239 Identities=14% Similarity=0.106 Sum_probs=146.6
Q ss_pred hhhhhhhhhhhhhhhcCCCcee-E----------EEc-CCCcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcce
Q 039428 20 IPIAYIISIELAIAMAKPATHV-Y----------QYH-SPSFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTV 86 (335)
Q Consensus 20 ~p~~~~~~~~~~~~~~d~~~~~-~----------~~~-~~~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v 86 (335)
.|++++.+.++...+.|-+--+ | ++. .....---+|++|-..-+|++ -.+.+|+++..-..+-+..
T Consensus 366 aPvala~a~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~- 444 (1899)
T KOG4659|consen 366 APVALAYAPDGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRN- 444 (1899)
T ss_pred ceeeEEEcCCCcEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCcccccc-
Confidence 4888888888888887765321 2 221 112233568999976666666 6678899986332211000
Q ss_pred eeeeEEeec-----C--C------c----CCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCC-
Q 039428 87 LEEVKLVKE-----D--D------V----VGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSG- 148 (335)
Q Consensus 87 ~~~~~~~~~-----~--~------~----~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~- 148 (335)
--+ .+... | + . .-..|.||++|. .|.||. +|. ..|.++|..+ -+.....-.+
T Consensus 445 N~e-vvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk-~g~lYf--aD~-----t~IR~iD~~g-iIstlig~~~~ 514 (1899)
T KOG4659|consen 445 NYE-VVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDK-MGNLYF--ADG-----TRIRVIDTTG-IISTLIGTTPD 514 (1899)
T ss_pred Cee-EEeccCcCccccccccCcchhcccceeccCCceeEcc-CCcEEE--ecc-----cEEEEeccCc-eEEEeccCCCC
Confidence 000 01100 1 0 0 013589999995 899999 565 4688888643 2221110000
Q ss_pred ---C----------ccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCcEEEEecCCccc-ccc---------ccccc
Q 039428 149 ---K----------SEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFT-AKE---------WYKNV 204 (335)
Q Consensus 149 ---~----------~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~-~~~---------~~~~~ 204 (335)
| .-....|.+++|+| |+.+||-| ++-|++++.++....++++|.-- -++ ....+
T Consensus 515 ~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl 592 (1899)
T KOG4659|consen 515 QHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTL 592 (1899)
T ss_pred ccCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhh
Confidence 0 01257899999999 57899987 57999999999887666664211 111 22345
Q ss_pred cccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEecc----------------------CCcCCCCCCeEEEcCC
Q 039428 205 FGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELR----------------------GGSSLSLGDGLALLSP 262 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~----------------------g~~~~~~pdGia~d~~ 262 (335)
..+..|++.++|.|||+++...+|-|+..-+..+....+... .+..+..|..+|+.|+
T Consensus 593 ~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPd 672 (1899)
T KOG4659|consen 593 LIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPD 672 (1899)
T ss_pred hhhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCC
Confidence 568999999999999999998666555432211022222100 0123578999999999
Q ss_pred CcEEEEecC
Q 039428 263 TKLVVAGNP 271 (335)
Q Consensus 263 g~l~va~~~ 271 (335)
|.+|+|+.+
T Consensus 673 g~v~IAD~g 681 (1899)
T KOG4659|consen 673 GDVIIADSG 681 (1899)
T ss_pred CcEEEecCC
Confidence 999999774
|
|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.4e-08 Score=94.21 Aligned_cols=226 Identities=18% Similarity=0.179 Sum_probs=149.3
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCC
Q 039428 59 VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW 138 (335)
Q Consensus 59 ~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~ 138 (335)
-|..+++. ....|.++.. ++..-.+ .+.+.++..|. ..+.||.+|=.+..+|- .|..++ .|.+-.+++.
T Consensus 989 ~gt~LL~a-qg~~I~~lpl-ng~~~~K-~~ak~~l~~p~---~IiVGidfDC~e~mvyW--tDv~g~---SI~rasL~G~ 1057 (1289)
T KOG1214|consen 989 VGTFLLYA-QGQQIGYLPL-NGTRLQK-DAAKTLLSLPG---SIIVGIDFDCRERMVYW--TDVAGR---SISRASLEGA 1057 (1289)
T ss_pred CcceEEEe-ccceEEEeec-Ccchhch-hhhhceEeccc---ceeeeeecccccceEEE--eecCCC---ccccccccCC
Confidence 34444444 3568888853 4431000 01122444443 36789999976677777 577665 3777667666
Q ss_pred eEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccC-C
Q 039428 139 KRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD-G 216 (335)
Q Consensus 139 ~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d-g 216 (335)
+....++ +++..|.|||||--+ |+|.+|+...+|-+-..+|++.+++ |.. .+.+|.+|++|+= |
T Consensus 1058 Ep~ti~n-----~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvL----f~t-----dLVNPR~iv~D~~rg 1123 (1289)
T KOG1214|consen 1058 EPETIVN-----SGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVL----FYT-----DLVNPRAIVVDPIRG 1123 (1289)
T ss_pred CCceeec-----ccCCCccceeeeeccceeeeeccccchhheeecCCceeeEE----Eee-----cccCcceEEeecccC
Confidence 5543222 237889999999875 6999999999999999999887643 322 5678999999995 5
Q ss_pred eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcCCCcEEEEEeeee
Q 039428 217 FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESSDGWETASVVAKF 293 (335)
Q Consensus 217 ~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~~~~~~~~~~~~~ 293 (335)
+||.+|+. +-+|-+.++++. ..+++- .. .+..|.|+.+|+..+ |--++.+.+++..+..+ +..+-.+.
T Consensus 1124 nLYwtDWnRenPkIets~mDG~--NrRili-n~--DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~-g~gRR~i~--- 1194 (1289)
T KOG1214|consen 1124 NLYWTDWNRENPKIETSSMDGE--NRRILI-NT--DIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPD-GTGRRVIQ--- 1194 (1289)
T ss_pred ceeeccccccCCcceeeccCCc--cceEEe-ec--ccCCCCCceeCcccceeeEEecCCcceeEecCC-CCcchhhh---
Confidence 99999986 568999999987 445443 22 256799999999864 33334444666665543 31111122
Q ss_pred cCCCCCcceEEEEeCCeEEEEeccCCC
Q 039428 294 NGPTHRVATAATVKDGRVYLSHLLGLG 320 (335)
Q Consensus 294 ~~p~~~~Pt~va~~~g~lyV~~~~~~~ 320 (335)
..+++|.+++-.++++|.++|.-++
T Consensus 1195 --~~LqYPF~itsy~~~fY~TDWk~n~ 1219 (1289)
T KOG1214|consen 1195 --NNLQYPFSITSYADHFYHTDWKRNG 1219 (1289)
T ss_pred --hcccCceeeeeccccceeeccccCc
Confidence 2366788888877779999887665
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.6e-08 Score=87.51 Aligned_cols=147 Identities=24% Similarity=0.315 Sum_probs=100.3
Q ss_pred CCCCceeECCCC-cEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECC--------
Q 039428 154 STADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC-------- 224 (335)
Q Consensus 154 ~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~-------- 224 (335)
.+|-|++++..| ++||+|.+-| +++++++|+..+.+.++... ......|++.++++|.+|++|+.
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l~~~~~G-----~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~ 188 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELLADEAEG-----KPFKFLNDLDIDPEGVVYFTDSSSKYDRRDF 188 (376)
T ss_pred CCcceEEeccCCCeEEEEeccee-eEEECCCCCcceeccccccC-----eeeeecCceeEcCCCeEEEeccccccchhhe
Confidence 799999999987 8999999865 89999998876543322111 12346899999998899999975
Q ss_pred ---------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcCCC-cEEEEEeeee
Q 039428 225 ---------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESSDG-WETASVVAKF 293 (335)
Q Consensus 225 ---------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~~~-~~~~~~~~~~ 293 (335)
+||++++|+.+. ..+++- .+ +..|.|+++.+|+. +.+|+....+++.+-.... .-+.++...
T Consensus 189 ~~a~l~g~~~GRl~~YD~~tK--~~~VLl-d~---L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~- 261 (376)
T KOG1520|consen 189 VFAALEGDPTGRLFRYDPSTK--VTKVLL-DG---LYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAE- 261 (376)
T ss_pred EEeeecCCCccceEEecCccc--chhhhh-hc---ccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhh-
Confidence 488999998876 444442 33 67899999999985 6666664334433322211 111122221
Q ss_pred cCCCCCcceEEEEe-CCeEEEEe
Q 039428 294 NGPTHRVATAATVK-DGRVYLSH 315 (335)
Q Consensus 294 ~~p~~~~Pt~va~~-~g~lyV~~ 315 (335)
..| .+|.++..+ +|+.||+-
T Consensus 262 ~LP--G~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 262 GLP--GYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred cCC--CCCcceeECCCCCEEEEE
Confidence 123 357789886 89999943
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.9e-06 Score=81.27 Aligned_cols=177 Identities=14% Similarity=0.193 Sum_probs=106.4
Q ss_pred CCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCc----CCCCcceEEEeCC------CCeEE
Q 039428 47 PSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDV----VGNATMGIAVDRP------RNRLL 116 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~----~~~~p~Gi~~d~~------~g~l~ 116 (335)
.-..|+++++.|+|++|++....|+|+++++.++.. . .....+.. ....+.||+++|+ ++.||
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~-----~--~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY 100 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEV-----K--VVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY 100 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCce-----e--eeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Confidence 344799999999998776655579999998533321 1 11112211 1246789999853 45799
Q ss_pred EEEecCCCC----ccceEEEEECCC--CeE----EEEeecCCCccCCCCCCceeECCCCcEEEEeCC-------------
Q 039428 117 VAFTDVLGN----KYSALAAYDLST--WKR----LFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV------------- 173 (335)
Q Consensus 117 v~~~D~~~~----~~~~v~~~d~~~--~~~----~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~------------- 173 (335)
++.+..... ...+|.++..+. ..+ ......+ ....+.-..|+|+|||.|||+-..
T Consensus 101 vsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP--~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~ 178 (454)
T TIGR03606 101 ISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLP--AGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN 178 (454)
T ss_pred EEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCC--CCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence 975432111 125788887642 111 1111221 112355567999999999996211
Q ss_pred -------------------CCeEEEEccCCcEEEEecCCccc--ccc-ccccccccCeEEEccCCeEEEEECCC---CEE
Q 039428 174 -------------------SSKIWKVGVEGQLLSIIRSPLFT--AKE-WYKNVFGLNGIVYHPDGFLIVIHMCS---GNL 228 (335)
Q Consensus 174 -------------------~~~I~~~d~~g~~~~~~~~~~~~--~~~-~~~~~~~p~Gia~~~dg~Lyvad~~~---~~v 228 (335)
.+.|+|++++|+... +++... .++ ..-...+|.|++++|+|.||+++.+. ..|
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~--dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~Lw~~e~Gp~~~DEi 256 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPK--DNPSINGVVSHIFTYGHRNPQGLAFTPDGTLYASEQGPNSDDEL 256 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCCCCCC--CCCccCCCcceEEEEeccccceeEECCCCCEEEEecCCCCCcEE
Confidence 347899998886321 111110 011 22356679999999999999999764 467
Q ss_pred EEEeCC
Q 039428 229 FKIDIR 234 (335)
Q Consensus 229 ~~~d~~ 234 (335)
.++...
T Consensus 257 N~I~~G 262 (454)
T TIGR03606 257 NIIVKG 262 (454)
T ss_pred EEeccC
Confidence 766543
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.2e-05 Score=67.88 Aligned_cols=196 Identities=16% Similarity=0.172 Sum_probs=126.4
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
...+++|+++++.+++...++.|..++..++.. .. ...... .....+.+.+.+..++++..| +.
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~----~~---~~~~~~---~~i~~~~~~~~~~~l~~~~~~------~~ 74 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL----LR---TLKGHT---GPVRDVAASADGTYLASGSSD------KT 74 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc----EE---EEecCC---cceeEEEECCCCCEEEEEcCC------Ce
Confidence 357899999998888887789999998543431 11 111111 133578888744355553222 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
|..||.++++....... . ......+.++++++++++....+.|..++.. ++....+.. ......
T Consensus 75 i~i~~~~~~~~~~~~~~----~-~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~i~ 139 (289)
T cd00200 75 IRLWDLETGECVRTLTG----H-TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG----------HTDWVN 139 (289)
T ss_pred EEEEEcCcccceEEEec----c-CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc----------CCCcEE
Confidence 99999987644422221 1 2356778999998888887778999999987 444332210 112378
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcCC
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESSD 282 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~~ 282 (335)
.+++++++.++++...++.|..+|....+ ....+.... .....+.+.++++ ++++.. .+.+.+++...
T Consensus 140 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~ 208 (289)
T cd00200 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHT----GEVNSVAFSPDGEKLLSSSS-DGTIKLWDLST 208 (289)
T ss_pred EEEEcCcCCEEEEEcCCCcEEEEEccccc-cceeEecCc----cccceEEECCCcCEEEEecC-CCcEEEEECCC
Confidence 89999988777666678899999998653 344444221 2367899999984 555543 46788877654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.4e-05 Score=65.96 Aligned_cols=194 Identities=12% Similarity=0.127 Sum_probs=127.1
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..+.|.++++.+++...++.|..++..+++. .. .+. ... .....+.+++ ++.++++.. .. +.|.
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~----~~--~~~-~~~---~~i~~~~~~~-~~~~~~~~~-~~----~~i~ 118 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGEC----VR--TLT-GHT---SYVSSVAFSP-DGRILSSSS-RD----KTIK 118 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccc----eE--EEe-ccC---CcEEEEEEcC-CCCEEEEec-CC----CeEE
Confidence 5889999998888777789999998643331 11 121 111 2467888886 566666433 11 3599
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccCeE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
.||..+++....... . ......+++++++.++++....+.|..+|... +....+. . .......+
T Consensus 119 ~~~~~~~~~~~~~~~----~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-----~-----~~~~i~~~ 183 (289)
T cd00200 119 VWDVETGKCLTTLRG----H-TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT-----G-----HTGEVNSV 183 (289)
T ss_pred EEECCCcEEEEEecc----C-CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe-----c-----CccccceE
Confidence 999987665533321 1 34567899999988777777688999999863 3333221 1 11247899
Q ss_pred EEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 211 VYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 211 a~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
++++++ .++++. .++.|..+|....+ ....+.... .....+.+++++.++++....+.+++++...
T Consensus 184 ~~~~~~~~l~~~~-~~~~i~i~d~~~~~-~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 184 AFSPDGEKLLSSS-SDGTIKLWDLSTGK-CLGTLRGHE----NGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred EECCCcCEEEEec-CCCcEEEEECCCCc-eecchhhcC----CceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 999999 555555 48899999998653 333332111 2467899999888888755347788887654
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.3e-05 Score=68.27 Aligned_cols=218 Identities=11% Similarity=0.070 Sum_probs=129.0
Q ss_pred CCcceeeeEEcCCCCEEEEEecCCeEEEEECC-C---CCCCcceeeeeEEeecC---CcC-CCCcceEEEeCCCCeEEEE
Q 039428 47 PSFLCETAKWDDVGRRFLVSFLDGGVGQVLVP-D---EYSPGTVLEEVKLVKED---DVV-GNATMGIAVDRPRNRLLVA 118 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~-~---g~~~~~v~~~~~~~~~~---~~~-~~~p~Gi~~d~~~g~l~v~ 118 (335)
.-.-|+||++.|.+.+|+.+...+....+|.. + +. +.+ + .+..| +.. ...|.|+.++. ...+-|.
T Consensus 21 ~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~-~~~-L----~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt 93 (336)
T TIGR03118 21 GLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLV-QDP-L----VVVIPAPPPLAAEGTPTGQVFNG-SDTFVVS 93 (336)
T ss_pred cccccceeEecCCCCEEEecCCcceEEeecCCcccccCC-ccc-e----EEEecCCCCCCCCCCccEEEEeC-CCceEEc
Confidence 34569999999999777777666766666531 1 11 101 1 11222 111 13689999984 3333332
Q ss_pred EecCCCCccceEEEEECCCCeEE-EE------------eecCCCccCCCCCCceeECCC---CcEEEEeCCCCeEEEEcc
Q 039428 119 FTDVLGNKYSALAAYDLSTWKRL-FL------------TQLSGKSEEKSTADDIAVDAE---GNAYVTDVVSSKIWKVGV 182 (335)
Q Consensus 119 ~~D~~~~~~~~v~~~d~~~~~~~-~~------------~~~~~~~~~~~~p~~~~vd~~---G~lyV~d~~~~~I~~~d~ 182 (335)
...... ...+.|-.+.|.+. +. ..+.. +....---++++... ..||.+|-.+++|-++|.
T Consensus 94 -~~g~~~--~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~-s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~ 169 (336)
T TIGR03118 94 -GEGITG--PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDA-SQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG 169 (336)
T ss_pred -CCCccc--ceeEEEEeCCceEEeecCcCCcccccccEEEEcc-CCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence 111000 12233333333322 11 00100 111223346776643 359999999999999976
Q ss_pred CCcEEEEecCCccccccccccccccCeEEEccCCeEEEEEC-------------CCCEEEEEeCCCCceeEEEEeccCCc
Q 039428 183 EGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHM-------------CSGNLFKIDIRKEEEEVKLIELRGGS 249 (335)
Q Consensus 183 ~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~-------------~~~~v~~~d~~~~~~~~~~~~~~g~~ 249 (335)
.=....+ ...|..|. .|....|-+|.-- .++|||+-. +.+.|-+||+++. .++++...+ .
T Consensus 170 ~f~~~~~--~g~F~DP~-iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~as~g-~ 242 (336)
T TIGR03118 170 SFRPPPL--PGSFIDPA-LPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRVASSG-R 242 (336)
T ss_pred ccccccC--CCCccCCC-CCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEeccCC-c
Confidence 5332221 12344432 3456678888766 679998732 3478999999998 788886433 4
Q ss_pred CCCCCCeEEEcCC------CcEEEEecCCCeEEEEEcCCC
Q 039428 250 SLSLGDGLALLSP------TKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 250 ~~~~pdGia~d~~------g~l~va~~~~~~~~v~~~~~~ 283 (335)
++.|+||++.|. |.|.|.+.+++.|.+++...+
T Consensus 243 -LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 243 -LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred -ccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 889999999764 789999998888988886655
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.7e-06 Score=81.51 Aligned_cols=163 Identities=12% Similarity=0.145 Sum_probs=100.7
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCC--ccCCCCCCceeECCC-------CcEEEEeC
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGK--SEEKSTADDIAVDAE-------GNAYVTDV 172 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~p~~~~vd~~-------G~lyV~d~ 172 (335)
.|.+|++.+ +|++||+-.+. .+|++++..++.......++.. ..+...+.||+++|+ +.+||+-+
T Consensus 31 ~Pw~maflP-DG~llVtER~~-----G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 31 KPWALLWGP-DNQLWVTERAT-----GKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred CceEEEEcC-CCeEEEEEecC-----CEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence 788999997 78999953211 3599998776543322222211 112577899999876 36999742
Q ss_pred ---------CCCeEEEEccCCc------EEEEecCCccccccccccccccCeEEEccCCeEEEEECC-------------
Q 039428 173 ---------VSSKIWKVGVEGQ------LLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC------------- 224 (335)
Q Consensus 173 ---------~~~~I~~~d~~g~------~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~------------- 224 (335)
...+|.|+..+.. ...++.. .|. .....-..|+|+|||.||++-..
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~----lP~--~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~ 178 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAG----LPA--GNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN 178 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEec----CCC--CCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence 2468888765421 1111211 010 01233567899999999995433
Q ss_pred -------------------CCEEEEEeCCCCc--------e-eEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCC---C
Q 039428 225 -------------------SGNLFKIDIRKEE--------E-EVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPY---P 273 (335)
Q Consensus 225 -------------------~~~v~~~d~~~~~--------~-~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~---~ 273 (335)
.++|+|+++++.- + ..+++.. | +..|.||++|++|.||+++.+. .
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~-G---~RNp~Gla~dp~G~Lw~~e~Gp~~~D 254 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTY-G---HRNPQGLAFTPDGTLYASEQGPNSDD 254 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEE-e---ccccceeEECCCCCEEEEecCCCCCc
Confidence 2479999988741 0 1234443 3 4679999999999999996542 3
Q ss_pred eEEEEEc
Q 039428 274 SARLVES 280 (335)
Q Consensus 274 ~~~v~~~ 280 (335)
.+.++..
T Consensus 255 EiN~I~~ 261 (454)
T TIGR03606 255 ELNIIVK 261 (454)
T ss_pred EEEEecc
Confidence 4555553
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-05 Score=78.92 Aligned_cols=200 Identities=16% Similarity=0.131 Sum_probs=117.8
Q ss_pred CCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEe--CCCCeEEEEEecCC------------
Q 039428 59 VGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVD--RPRNRLLVAFTDVL------------ 123 (335)
Q Consensus 59 ~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d--~~~g~l~v~~~D~~------------ 123 (335)
+|+.+|+. -.+.+|.|++...=+ +. +.+..|... ..+|+++. |..+.+++.. ...
T Consensus 140 dGr~~findk~n~Rvari~l~~~~-----~~--~i~~iPn~~--~~Hg~~~~~~p~t~yv~~~~-e~~~PlpnDGk~l~~ 209 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMK-----CD--KITELPNVQ--GIHGLRPQKIPRTGYVFCNG-EFRIPLPNDGKDLDD 209 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEe-----ec--eeEeCCCcc--CccccCccccCCccEEEeCc-ccccccCCCCCEeec
Confidence 46666666 557889999853211 12 244456543 44666665 3333333321 110
Q ss_pred --CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeC---CCC-----------eEEEEccC---
Q 039428 124 --GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV---VSS-----------KIWKVGVE--- 183 (335)
Q Consensus 124 --~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~---~~~-----------~I~~~d~~--- 183 (335)
.. .+.+..+|.++.++.+.+.+ ...|..+.++++|. +|++.. ... .+..|+..
T Consensus 210 ~~ey-~~~vSvID~etmeV~~qV~V------dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~ie 282 (635)
T PRK02888 210 PKKY-RSLFTAVDAETMEVAWQVMV------DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIE 282 (635)
T ss_pred ccce-eEEEEEEECccceEEEEEEe------CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHH
Confidence 11 25677889888877766655 24788999999975 888742 111 22333321
Q ss_pred -----Cc-------EEEEecCCc-----cccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCce-------
Q 039428 184 -----GQ-------LLSIIRSPL-----FTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEE------- 238 (335)
Q Consensus 184 -----g~-------~~~~~~~~~-----~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~------- 238 (335)
|+ .+.++.... ...-...+....|.|++++||| ++|+++..++.|.+||....+.
T Consensus 283 a~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 283 EAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred HhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 21 112221111 0000124466789999999999 9999999999999999987420
Q ss_pred ----eEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 239 ----EVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 239 ----~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
.+..+.+ | .+|-..++|++|+.|++-.-...+...+.
T Consensus 363 ~~~~vvaevev-G----lGPLHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 363 PRDAVVAEPEL-G----LGPLHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred ccceEEEeecc-C----CCcceEEECCCCCEEEeEeecceeEEEeh
Confidence 1122222 3 35999999999999999553344444443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.6e-06 Score=73.72 Aligned_cols=166 Identities=17% Similarity=0.185 Sum_probs=100.9
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
..+.||+++..+ .+|..+..++..+++|..+-+ .+. ..+.++ -..||+.| +.+||+ +|..
T Consensus 89 ~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~----~~~---~~~y~~----EGWGLt~d--g~~Li~--SDGS---- 148 (264)
T PF05096_consen 89 RYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLK----KIG---TFPYPG----EGWGLTSD--GKRLIM--SDGS---- 148 (264)
T ss_dssp T--EEEEEEETT-EEEEEESSSSEEEEEETTTTE----EEE---EEE-SS----S--EEEEC--SSCEEE--E-SS----
T ss_pred cccceeEEEECC-EEEEEEecCCeEEEEccccce----EEE---EEecCC----cceEEEcC--CCEEEE--ECCc----
Confidence 347899999854 566666778999999953222 122 223332 34699866 678999 5553
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCccccc-----ccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAK-----EWY 201 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~-----~~~ 201 (335)
++|+.+||++-+....+.+...+.+....|.+.+- +|.+|..-+.+.+|.+|||... ....+.-..+..+ ...
T Consensus 149 ~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~ 227 (264)
T PF05096_consen 149 SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQ 227 (264)
T ss_dssp SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST-
T ss_pred cceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhccccccccc
Confidence 56999999987665444443233346778888884 7999999999999999999854 4433321111110 001
Q ss_pred ccccccCeEEEccCC-eEEEEECCCCEEEEEeCC
Q 039428 202 KNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIR 234 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~ 234 (335)
+...-.||||++|+. ++||+--.=.++|++.+.
T Consensus 228 ~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 228 PDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp -TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred ccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 112348999999977 999997766788887653
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.5e-05 Score=71.50 Aligned_cols=195 Identities=13% Similarity=0.117 Sum_probs=112.8
Q ss_pred ceeeeEEcCCCCEE-EEEe--cCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 50 LCETAKWDDVGRRF-LVSF--LDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 50 ~pegia~d~~g~~~-~~~~--~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
.-..++|+|+|+.+ |++. ....|+.+|..+++ .. .+...++ .....+++|++..|+++. +..+.
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-----~~--~l~~~~g----~~~~~~~SPDG~~la~~~-~~~g~- 269 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-----RE--LVGNFPG----MTFAPRFSPDGRKVVMSL-SQGGN- 269 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-----EE--EeecCCC----cccCcEECCCCCEEEEEE-ecCCC-
Confidence 34678999999854 4443 23689999965444 11 1222222 234677888555565542 22222
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEE-EeC-CCCeEEEEccCCcEEEEecCCcccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYV-TDV-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV-~d~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
..|+.+|.++++....... ........++|||+ +++ ++. ....||++|.+++..+.+.. .
T Consensus 270 -~~Iy~~d~~~~~~~~Lt~~------~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~---~------- 332 (435)
T PRK05137 270 -TDIYTMDLRSGTTTRLTDS------PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF---G------- 332 (435)
T ss_pred -ceEEEEECCCCceEEccCC------CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec---C-------
Confidence 4699999998866532211 12334578899986 444 432 24589999988765442211 0
Q ss_pred ccccCeEEEccCC-eEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEE-ec-CC---Ce
Q 039428 204 VFGLNGIVYHPDG-FLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVA-GN-PY---PS 274 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va-~~-~~---~~ 274 (335)
.......+++||| .|+++.... .+|+.++++++ ..+.+.. + . ....+.+.+||+ ++++ +. +. ..
T Consensus 333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~--~~~~lt~-~-~---~~~~p~~spDG~~i~~~~~~~~~~~~~~ 405 (435)
T PRK05137 333 GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS--GERILTS-G-F---LVEGPTWAPNGRVIMFFRQTPGSGGAPK 405 (435)
T ss_pred CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC--ceEeccC-C-C---CCCCCeECCCCCEEEEEEccCCCCCcce
Confidence 0123457899999 776665433 47999998776 3444432 2 1 245678899986 4444 22 11 24
Q ss_pred EEEEEcC
Q 039428 275 ARLVESS 281 (335)
Q Consensus 275 ~~v~~~~ 281 (335)
+.+++.+
T Consensus 406 L~~~dl~ 412 (435)
T PRK05137 406 LYTVDLT 412 (435)
T ss_pred EEEEECC
Confidence 5666553
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-06 Score=81.43 Aligned_cols=110 Identities=26% Similarity=0.427 Sum_probs=70.1
Q ss_pred CCCCceeECCCCcEEEEeCCCCeEEEEccCCcE-EEEecCCccccccccccccccCeEEEccC----CeEEEEECCC---
Q 039428 154 STADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAKEWYKNVFGLNGIVYHPD----GFLIVIHMCS--- 225 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~~~~~~~~~p~Gia~~~d----g~Lyvad~~~--- 225 (335)
..|..|++.|||++||++. .|+|++++.+|.. ..+...+... .....+..||+++|+ ++||++-+..
T Consensus 2 ~~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~----~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~ 76 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAER-SGRIWVVDKDGSLKTPVADLPEVF----ADGERGLLGIAFHPDFASNGYLYVYYTNADED 76 (331)
T ss_dssp SSEEEEEEETTSCEEEEET-TTEEEEEETTTEECEEEEE-TTTB----TSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TS
T ss_pred CCceEEEEeCCCcEEEEeC-CceEEEEeCCCcCcceeccccccc----ccccCCcccceeccccCCCCEEEEEEEcccCC
Confidence 4688999999999999988 8999999988776 2221111111 123456899999995 6888877633
Q ss_pred -----CEEEEEeCCCCc---eeEE-EEec-cC-CcCCCCCCeEEEcCCCcEEEE
Q 039428 226 -----GNLFKIDIRKEE---EEVK-LIEL-RG-GSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 226 -----~~v~~~d~~~~~---~~~~-~~~~-~g-~~~~~~pdGia~d~~g~l~va 268 (335)
.+|.|+..+... ...+ ++.. +. ....-...+|+++++|.|||+
T Consensus 77 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs 130 (331)
T PF07995_consen 77 GGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVS 130 (331)
T ss_dssp SSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEE
T ss_pred CCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEE
Confidence 589988887641 1112 2211 11 011223467999999999999
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00014 Score=63.85 Aligned_cols=233 Identities=12% Similarity=0.123 Sum_probs=148.3
Q ss_pred cCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCC
Q 039428 45 HSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLG 124 (335)
Q Consensus 45 ~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~ 124 (335)
.+-..+-+++++.++|+.++...+++.+..||...++ ..+++. .+. .-..++++++ +++-.|. ...
T Consensus 60 ~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~------~t~~f~-GH~---~dVlsva~s~-dn~qivS--GSr- 125 (315)
T KOG0279|consen 60 TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE------STRRFV-GHT---KDVLSVAFST-DNRQIVS--GSR- 125 (315)
T ss_pred eccceEecceEEccCCceEEeccccceEEEEEecCCc------EEEEEE-ecC---CceEEEEecC-CCceeec--CCC-
Confidence 4444567899999999987777999999999976554 112343 222 2467999997 5666662 222
Q ss_pred CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-c-EEEEeCCCCeEEEEccCCcEEEEecCCccccccccc
Q 039428 125 NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-N-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 125 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~ 202 (335)
+ ..|..||..+......... .. -.-.+-+.|.|+- + +.++-+....|..+|.++..++ ..|..
T Consensus 126 D--kTiklwnt~g~ck~t~~~~---~~-~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~----~~~~g----- 190 (315)
T KOG0279|consen 126 D--KTIKLWNTLGVCKYTIHED---SH-REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR----TTFIG----- 190 (315)
T ss_pred c--ceeeeeeecccEEEEEecC---CC-cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh----hcccc-----
Confidence 2 3588898876654422211 11 3456778899973 4 6666666788888998876544 12221
Q ss_pred cccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 203 NVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 203 ~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
.....|-++++|||.|..+-..+++++-.|++.++ ..+.++ . +.....++|.|+ ++|++-.-..++++.+...
T Consensus 191 h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k-~lysl~--a---~~~v~sl~fspn-rywL~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 191 HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK-NLYSLE--A---FDIVNSLCFSPN-RYWLCAATATSIKIWDLES 263 (315)
T ss_pred ccccEEEEEECCCCCEEecCCCCceEEEEEccCCc-eeEecc--C---CCeEeeEEecCC-ceeEeeccCCceEEEeccc
Confidence 12347899999999999998889999999999875 444443 2 233678999885 6666643336688888766
Q ss_pred CcEEEEEeeeecCC----CCCcceEEEE--eCCeEEE
Q 039428 283 GWETASVVAKFNGP----THRVATAATV--KDGRVYL 313 (335)
Q Consensus 283 ~~~~~~~~~~~~~p----~~~~Pt~va~--~~g~lyV 313 (335)
+....++...+.+| ......+++. ++.+||-
T Consensus 264 ~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~ 300 (315)
T KOG0279|consen 264 KAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA 300 (315)
T ss_pred hhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence 53333333233233 1122234555 2667775
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.3e-05 Score=76.88 Aligned_cols=197 Identities=18% Similarity=0.234 Sum_probs=131.3
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEE-ecCCCCccce
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAF-TDVLGNKYSA 129 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~-~D~~~~~~~~ 129 (335)
-.+++++|||+++.++..+++|-+||...+- . ++++.+.. ....++.+.. +|+..++. -| +.
T Consensus 353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf------C---~vTFteHt-s~Vt~v~f~~-~g~~llssSLD------Gt 415 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGF------C---FVTFTEHT-SGVTAVQFTA-RGNVLLSSSLD------GT 415 (893)
T ss_pred eeeEEECCCCcEEEeccCCCcEEEEeccCce------E---EEEeccCC-CceEEEEEEe-cCCEEEEeecC------Ce
Confidence 3689999999988888889999999854332 2 33333322 3567999996 66666643 23 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-CCeEEEEccC-CcEEEEecCCcccccccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-SSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
|..||+....-...... |. ....+-+++||.|.+.++... .-.|++++.+ |+.+.++.. ...| .
T Consensus 416 VRAwDlkRYrNfRTft~--P~--p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG--HEgP--------V 481 (893)
T KOG0291|consen 416 VRAWDLKRYRNFRTFTS--PE--PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG--HEGP--------V 481 (893)
T ss_pred EEeeeecccceeeeecC--CC--ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC--CCCc--------c
Confidence 99999875433222222 21 355677999999998777554 5689999977 444443321 1111 5
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEEEEcCCCc
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARLVESSDGW 284 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~~~~~~ 284 (335)
.+++++|+|.++++-+.+..|.+.+.-...+.++.+++.. ..-++++.|+| .+.|+.- .+.+..++...+.
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~s-----dvl~vsfrPdG~elaVaTl-dgqItf~d~~~~~ 553 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRS-----DVLAVSFRPDGKELAVATL-DGQITFFDIKEAV 553 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCceeeeEeecc-----ceeEEEEcCCCCeEEEEEe-cceEEEEEhhhce
Confidence 7899999998888988998888777765422666676543 24688899998 4777743 1457777665443
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00033 Score=65.86 Aligned_cols=254 Identities=16% Similarity=0.161 Sum_probs=132.9
Q ss_pred cceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeee--eEEeec----------CCcCC--CCcceEEEeCCCC
Q 039428 49 FLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEE--VKLVKE----------DDVVG--NATMGIAVDRPRN 113 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~--~~~~~~----------~~~~~--~~p~Gi~~d~~~g 113 (335)
..|.+++..|+| .+.+. ...+.+..+.. ++....+ ++. ..+... +.+.. ..+.+++.. .+
T Consensus 67 e~p~~~~~lP~G-~~~v~er~~G~l~~i~~-g~~~~~~-~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~~--~~ 141 (399)
T COG2133 67 EHPWGLARLPDG-VLLVTERPTGRLRLISD-GGSASPP-VSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISEP--GG 141 (399)
T ss_pred cCchhheecCCc-eEEEEccCCccEEEecC-CCccccc-ccccceEEeccCCCccceEecccccccceeeeEEEee--cC
Confidence 368999999999 66666 54478877742 2221000 000 001111 11111 346777765 56
Q ss_pred eEEEEEecCCCCccceEEEEECCCCeE----EEEeecCCCccCCCCCCceeECCCCcEEEEeC-------------CCCe
Q 039428 114 RLLVAFTDVLGNKYSALAAYDLSTWKR----LFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-------------VSSK 176 (335)
Q Consensus 114 ~l~v~~~D~~~~~~~~v~~~d~~~~~~----~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-------------~~~~ 176 (335)
.+|+++.+ .+.+|+....++ ....+++. ...+.-..|+++|||.|||+-. ..+.
T Consensus 142 ~~~~~n~~-------~~~~~~~g~~~l~~~~~i~~~lP~--~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk 212 (399)
T COG2133 142 GLYVANRV-------AIGRLPGGDTKLSEPKVIFRGIPK--GGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGK 212 (399)
T ss_pred CceEEEEE-------EEEEcCCCccccccccEEeecCCC--CCCcCcccEEECCCCcEEEEeCCCCCcccccCccccccc
Confidence 77876553 366676211111 12233422 1145566899999999999732 2467
Q ss_pred EEEEccCCcEEEEecCCcccccc-ccccccccCeEEEccC-CeEEEEECCCCEE------EEEeCCCCce--e-------
Q 039428 177 IWKVGVEGQLLSIIRSPLFTAKE-WYKNVFGLNGIVYHPD-GFLIVIHMCSGNL------FKIDIRKEEE--E------- 239 (335)
Q Consensus 177 I~~~d~~g~~~~~~~~~~~~~~~-~~~~~~~p~Gia~~~d-g~Lyvad~~~~~v------~~~d~~~~~~--~------- 239 (335)
|++++.++.... +.-+..++ ......+|.|++++|. |.||+++.+...+ .++.....-+ .
T Consensus 213 ~~r~~~a~~~~~---d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~ 289 (399)
T COG2133 213 VLRIDRAGIIPA---DNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNY 289 (399)
T ss_pred eeeeccCccccc---CCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCccc
Confidence 777777664432 11121111 2335667999999997 7999999877333 2221111000 0
Q ss_pred -EEEEe--------ccCCc---CCCCCCeEEEcCC-------CcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCc
Q 039428 240 -VKLIE--------LRGGS---SLSLGDGLALLSP-------TKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRV 300 (335)
Q Consensus 240 -~~~~~--------~~g~~---~~~~pdGia~d~~-------g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~ 300 (335)
.+... ..... .-..|-||++-.. +.++|+.-++-.+...+.+.+.+ ....+.+.......
T Consensus 290 ~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~-~~~~~fl~~d~~gR 368 (399)
T COG2133 290 DGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYK-VVLTGFLSGDLGGR 368 (399)
T ss_pred CccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcc-eEEEEEEecCCCCc
Confidence 00000 00000 0124789999742 68999965433333333332222 12223333212245
Q ss_pred ceEEEEe-CCeEEEEeccCCC
Q 039428 301 ATAATVK-DGRVYLSHLLGLG 320 (335)
Q Consensus 301 Pt~va~~-~g~lyV~~~~~~~ 320 (335)
|-.|++. +|.|||++..+.|
T Consensus 369 ~~dV~v~~DGallv~~D~~~g 389 (399)
T COG2133 369 PRDVAVAPDGALLVLTDQGDG 389 (399)
T ss_pred ccceEECCCCeEEEeecCCCC
Confidence 6788886 9999998777644
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00012 Score=65.08 Aligned_cols=202 Identities=14% Similarity=0.139 Sum_probs=117.7
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d 181 (335)
...+++++|+++.||++. +.. ..|+.++.+ |+++..+++.+ +.-|..++.-.+|...++|....+++.+.
T Consensus 87 nvS~LTynp~~rtLFav~-n~p----~~iVElt~~-GdlirtiPL~g----~~DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVT-NKP----AAIVELTKE-GDLIRTIPLTG----FSDPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccceeeCCCcceEEEec-CCC----ceEEEEecC-CceEEEecccc----cCChhHeEEecCCEEEEEehhcceEEEEE
Confidence 367999999888999863 322 569999876 56776677632 67788999988888888999888888765
Q ss_pred --cCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCC-EEEEEeCCCCceeEEEEeccC-Cc--CCCCC
Q 039428 182 --VEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSG-NLFKIDIRKEEEEVKLIELRG-GS--SLSLG 254 (335)
Q Consensus 182 --~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~-~v~~~d~~~~~~~~~~~~~~g-~~--~~~~p 254 (335)
+++.... +.+..+.-......-.+-.|+|+++.+ .||++-..+- .|+.++.....-......... +. -+..-
T Consensus 157 vd~~t~~~~-~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 157 VDADTTVIS-AKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EcCCccEEe-ccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 4444433 111111111011113467899999976 8888875543 677776443210011000000 00 01235
Q ss_pred CeEEEcCC-CcEEEEecCCCeEEEEEcCCC-cEEEEEeeeecC--CCCCcceEEEEe-CCeEEEE
Q 039428 255 DGLALLSP-TKLVVAGNPYPSARLVESSDG-WETASVVAKFNG--PTHRVATAATVK-DGRVYLS 314 (335)
Q Consensus 255 dGia~d~~-g~l~va~~~~~~~~v~~~~~~-~~~~~~~~~~~~--p~~~~Pt~va~~-~g~lyV~ 314 (335)
.|+.+++. ++|+|-+..+..+..++...+ -....+.+..++ ....+|.+++.+ +|+|||.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 68888865 678887664444433433221 111112222211 124557899996 8999983
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.44 E-value=9e-06 Score=69.78 Aligned_cols=154 Identities=15% Similarity=0.115 Sum_probs=96.0
Q ss_pred CCCcceEEEeCCCCeEEEEEecCCCC----ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCC
Q 039428 100 GNATMGIAVDRPRNRLLVAFTDVLGN----KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVS 174 (335)
Q Consensus 100 ~~~p~Gi~~d~~~g~l~v~~~D~~~~----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~ 174 (335)
.++.+.-.+|| +|+.|+..+...+. ....++++- .++++....+ ....+|+++-|.+. .+|+.|+.+
T Consensus 108 knR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~-~~h~v~~i~~------~v~IsNgl~Wd~d~K~fY~iDsln 179 (310)
T KOG4499|consen 108 KNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWL-AGHQVELIWN------CVGISNGLAWDSDAKKFYYIDSLN 179 (310)
T ss_pred hcccccCccCC-CCceeeeeeccccccccccccEEEEec-cCCCceeeeh------hccCCccccccccCcEEEEEccCc
Confidence 35667778998 89999865322111 112343332 3333332211 25789999999875 699999999
Q ss_pred CeE--EEEccCCcEE----EEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCC
Q 039428 175 SKI--WKVGVEGQLL----SIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGG 248 (335)
Q Consensus 175 ~~I--~~~d~~g~~~----~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~ 248 (335)
..| |.+|-.+..+ .++.-... +| .....|.|+++|.+|+|||+-...++|+++|+..++ .+..+.++-
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~-~~---~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK-~L~eiklPt- 253 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKS-QP---FESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK-ILLEIKLPT- 253 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccC-CC---cCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc-EEEEEEcCC-
Confidence 999 5544443221 11111000 11 122359999999999999999999999999999986 666666543
Q ss_pred cCCCCCCeEEEcCC--CcEEEEec
Q 039428 249 SSLSLGDGLALLSP--TKLVVAGN 270 (335)
Q Consensus 249 ~~~~~pdGia~d~~--g~l~va~~ 270 (335)
......++-.. ..+||+.+
T Consensus 254 ---~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 254 ---PQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred ---CceEEEEecCCCccEEEEEeh
Confidence 12345566544 35777744
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00021 Score=69.36 Aligned_cols=180 Identities=14% Similarity=0.197 Sum_probs=104.1
Q ss_pred eeeEEcCCCCEEEEE-ecC--CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 52 ETAKWDDVGRRFLVS-FLD--GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~~--~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
..+.|+|+|+.++.. ..+ ..|+.+|..+++ .. .+...++ .....+++|++..|+++. +..+. .
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-----~~--~lt~~~g----~~~~~~wSPDG~~La~~~-~~~g~--~ 286 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-----RE--KVTSFPG----INGAPRFSPDGKKLALVL-SKDGQ--P 286 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEECCCCC-----eE--EecCCCC----CcCCeeECCCCCEEEEEE-eCCCC--e
Confidence 478999999866554 333 479999864443 11 1211222 223567888555676543 22222 4
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeC--CCCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV--VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~--~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
.|+.+|.++++....... .......+++|||+ ++++.. ....||+++.++...+.+. +.. .
T Consensus 287 ~Iy~~dl~tg~~~~lt~~------~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt---~~g-------~ 350 (448)
T PRK04792 287 EIYVVDIATKALTRITRH------RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT---FEG-------E 350 (448)
T ss_pred EEEEEECCCCCeEECccC------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe---cCC-------C
Confidence 699999998876532211 12344578899986 555432 3468999998754433221 111 1
Q ss_pred ccCeEEEccCC-eEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEE
Q 039428 206 GLNGIVYHPDG-FLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVA 268 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va 268 (335)
...+.+++||| .|+++...+ .+|+++|++++ ..+.+.. + . . -....+.++|+ ++++
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g--~~~~lt~-~-~-~--d~~ps~spdG~~I~~~ 410 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG--AMQVLTS-T-R-L--DESPSVAPNGTMVIYS 410 (448)
T ss_pred CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC--CeEEccC-C-C-C--CCCceECCCCCEEEEE
Confidence 13356899999 777766544 37899999887 4444431 1 1 1 11236788885 4444
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00079 Score=60.08 Aligned_cols=205 Identities=11% Similarity=0.134 Sum_probs=134.0
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.-.++++.++++|.+++++..+..|..+|..++.. +. .+..+.. .+.-+.+-.....+... ....+
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~----~~---ti~skky---G~~~~~Fth~~~~~i~s--Stk~d-- 79 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ----VK---TINSKKY---GVDLACFTHHSNTVIHS--STKED-- 79 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce----ee---Eeecccc---cccEEEEecCCceEEEc--cCCCC--
Confidence 44678999999999999987788999998765651 21 2222221 22233333224555442 22222
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
..|.-+++.+++.+.. +.+. ....+.+.+.|.+..|++.+...+|..+|...+.-.- .+. ..++
T Consensus 80 ~tIryLsl~dNkylRY--F~GH---~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg----~l~-------~~~~ 143 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRY--FPGH---KKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG----LLN-------LSGR 143 (311)
T ss_pred CceEEEEeecCceEEE--cCCC---CceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce----EEe-------cCCC
Confidence 3588889888877643 3222 4678899999999999999999999999987332110 011 1235
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCC-ceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKE-EEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~-~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
.-.|+||+|-++++-.+++.|..+|.+.- ++..+.+.+.. .....=.+|.+.++|+..+-....+.+.+++.-+|
T Consensus 144 pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~-~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 144 PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD-NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG 219 (311)
T ss_pred cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC-CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence 56799999988888888889999999873 33555665532 11334578999999975544332355777776665
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00028 Score=68.22 Aligned_cols=193 Identities=16% Similarity=0.186 Sum_probs=108.9
Q ss_pred eeeeEEcCCCCEEEEE-ec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 51 CETAKWDDVGRRFLVS-FL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
-.+++|+|+|+.++.. .. ...|+++|..+++ .. .+...++ .....++++++..|+++. +..+.
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~-----~~--~l~~~~g----~~~~~~~SpDG~~l~~~~-s~~g~-- 271 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ-----RE--LVASFRG----INGAPSFSPDGRRLALTL-SRDGN-- 271 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECCCCC-----EE--EeccCCC----CccCceECCCCCEEEEEE-eCCCC--
Confidence 3578999999855544 32 3579999864443 11 1222222 223678888555565542 22222
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEE-eC-CCCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVT-DV-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~-d~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
..|+++|+++++....... .......++++||+ ++++ +. ....||+++.++...+.+. +. .
T Consensus 272 ~~Iy~~d~~~g~~~~lt~~------~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt---~~-------g 335 (433)
T PRK04922 272 PEIYVMDLGSRQLTRLTNH------FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT---FQ-------G 335 (433)
T ss_pred ceEEEEECCCCCeEECccC------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee---cC-------C
Confidence 4699999998875432211 12234578999986 4444 32 2357999998654333221 11 0
Q ss_pred cccCeEEEccCC-eEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEE-ec-CCCeEEEE
Q 039428 205 FGLNGIVYHPDG-FLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVA-GN-PYPSARLV 278 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va-~~-~~~~~~v~ 278 (335)
.....++++||| .++++...+ .+|+.+++.++ ..+.+. .+ . ......+.++|+ ++++ +. +...+.++
T Consensus 336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g--~~~~Lt-~~-~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG--SVRTLT-PG-S---LDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred CCccCEEECCCCCEEEEEECCCCceeEEEEECCCC--CeEECC-CC-C---CCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 113468999999 777765443 37999999876 344443 22 1 123457888886 3433 32 22335555
Q ss_pred Ec
Q 039428 279 ES 280 (335)
Q Consensus 279 ~~ 280 (335)
..
T Consensus 409 ~~ 410 (433)
T PRK04922 409 ST 410 (433)
T ss_pred EC
Confidence 44
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00031 Score=67.78 Aligned_cols=182 Identities=14% Similarity=0.162 Sum_probs=106.7
Q ss_pred ceeeeEEcCCCCEEEEE-ec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 50 LCETAKWDDVGRRFLVS-FL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
.-.+++|+|+|+.++.. .. ...|+.++..+++ .. .+...++ ......++|++..|+++ .+..+.
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-----~~--~l~~~~~----~~~~~~~SPDG~~La~~-~~~~g~- 266 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-----VR--QVASFPR----HNGAPAFSPDGSKLAFA-LSKTGS- 266 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-----eE--EccCCCC----CcCCeEECCCCCEEEEE-EcCCCC-
Confidence 35689999999865543 32 3579999864443 11 1222232 22357889855556654 232222
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-E-EEEeC-CCCeEEEEccCCcEEEEecCCcccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-A-YVTDV-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-l-yV~d~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
..|+.+|.++++....... ........+.|||+ + |+++. ....||+++.++...+.+.. .
T Consensus 267 -~~I~~~d~~tg~~~~lt~~------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~---~------- 329 (429)
T PRK03629 267 -LNLYVMDLASGQIRQVTDG------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW---E------- 329 (429)
T ss_pred -cEEEEEECCCCCEEEccCC------CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec---C-------
Confidence 3599999998866532211 12345688999996 4 44543 24589999988654432211 0
Q ss_pred ccccCeEEEccCC-eEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 204 VFGLNGIVYHPDG-FLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
.......+++||| .|+++...+ ..|+.+|++++ ..+.+.. . . .-....+.+||+..+.
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g--~~~~Lt~-~-~---~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG--GVQVLTD-T-F---LDETPSIAPNGTMVIY 390 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC--CeEEeCC-C-C---CCCCceECCCCCEEEE
Confidence 1123468899999 666655433 46899999877 4444432 1 1 1124567888863333
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00043 Score=66.52 Aligned_cols=192 Identities=11% Similarity=0.093 Sum_probs=108.5
Q ss_pred eeeeEEcCCCC--EEEEEec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 51 CETAKWDDVGR--RFLVSFL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 51 pegia~d~~g~--~~~~~~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
--.+.|+|+|+ ++|++.. ...|+++|..+++ .. .+...++ ......++|++..|.++. +..+.
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~-----~~--~lt~~~g----~~~~~~~SPDG~~la~~~-~~~g~- 256 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK-----KE--KIASSQG----MLVVSDVSKDGSKLLLTM-APKGQ- 256 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc-----EE--EEecCCC----cEEeeEECCCCCEEEEEE-ccCCC-
Confidence 34789999997 4445533 4689999975454 11 2322222 222345777555666543 33222
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEe-C-CCCeEEEEccCCcEEEEecCCcccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTD-V-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d-~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
..|+.+|.++++........ ..-....+.|||+ +|++. . ....||+++.++...+.+ .+..
T Consensus 257 -~~Iy~~dl~~g~~~~LT~~~------~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl---t~~g------ 320 (419)
T PRK04043 257 -PDIYLYDTNTKTLTQITNYP------GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV---VFHG------ 320 (419)
T ss_pred -cEEEEEECCCCcEEEcccCC------CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC---ccCC------
Confidence 57999999888755332221 1112347899995 66653 2 345899999986654321 1111
Q ss_pred ccccCeEEEccCC-eEEEEECCC--------CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEE-ec-C
Q 039428 204 VFGLNGIVYHPDG-FLIVIHMCS--------GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVA-GN-P 271 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyvad~~~--------~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va-~~-~ 271 (335)
. .+ ..++||| .|.++.... .+|+.+|++++ ..+.+...+ . -....+.|||+ ++++ .. +
T Consensus 321 -~-~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g--~~~~LT~~~-~----~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 321 -K-NN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD--YIRRLTANG-V----NQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred -C-cC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC--CeEECCCCC-C----cCCeEECCCCCEEEEEEccCC
Confidence 0 12 4899999 565444332 48999999887 444443222 1 12367888885 4444 22 2
Q ss_pred CCeEEEEEcC
Q 039428 272 YPSARLVESS 281 (335)
Q Consensus 272 ~~~~~v~~~~ 281 (335)
...+.+++.+
T Consensus 391 ~~~L~~~~l~ 400 (419)
T PRK04043 391 QSALGIIRLN 400 (419)
T ss_pred cEEEEEEecC
Confidence 2235555553
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00028 Score=69.57 Aligned_cols=195 Identities=12% Similarity=0.178 Sum_probs=126.3
Q ss_pred eeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 51 CETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
-..++|...|+.+.+. ..-|++.+|+-....| |++ ..+.. ...+.++++| +|.+.++.+|. +.
T Consensus 310 I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY---VlK------QQgH~-~~i~~l~YSp-Dgq~iaTG~eD-----gK 373 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY---VLK------QQGHS-DRITSLAYSP-DGQLIATGAED-----GK 373 (893)
T ss_pred eeEEEecccCCEEEEcCCccceEEEEEeeccce---eee------ccccc-cceeeEEECC-CCcEEEeccCC-----Cc
Confidence 3567787778866666 4457877776432332 111 11111 2467899997 78888865443 46
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
|.+||..++.=. +.+..+ -+...++.+..+|+..++.+..|+|..+|... +--+ .|+.| ....-.
T Consensus 374 VKvWn~~SgfC~--vTFteH---ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR-----Tft~P----~p~Qfs 439 (893)
T KOG0291|consen 374 VKVWNTQSGFCF--VTFTEH---TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR-----TFTSP----EPIQFS 439 (893)
T ss_pred EEEEeccCceEE--EEeccC---CCceEEEEEEecCCEEEEeecCCeEEeeeecccceee-----eecCC----Cceeee
Confidence 999999877433 223221 45677899999999999999999999999762 2222 35544 234578
Q ss_pred eEEEccCCeEEEEECCC-CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 209 GIVYHPDGFLIVIHMCS-GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~-~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
.+|+||.|.|.++-..+ =.|++.+...++ .+..+ .| +. +-..++.++++|.+.++..-...+++.+.
T Consensus 440 cvavD~sGelV~AG~~d~F~IfvWS~qTGq-llDiL--sG-HE-gPVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-LLDIL--SG-HE-GPVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred EEEEcCCCCEEEeeccceEEEEEEEeecCe-eeehh--cC-CC-CcceeeEEccccCeEEeccccceEEEEEe
Confidence 99999999766655444 478888888874 33333 23 31 22478999999987777432355666543
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.4e-06 Score=62.30 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=52.6
Q ss_pred ceEEEeCCCCeEEEEEecCC------------CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEE
Q 039428 104 MGIAVDRPRNRLLVAFTDVL------------GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVT 170 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~------------~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~ 170 (335)
+++.+++++|.+|.+.+... +...++|++||+++++.....+. ..+|||+++++|+. ++|+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~------L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG------LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE------ESSEEEEEE-TTSSEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC------CCccCeEEEcCCCCEEEEE
Confidence 37888874599999543222 12347899999999987654432 68999999999986 9999
Q ss_pred eCCCCeEEEEccCC
Q 039428 171 DVVSSKIWKVGVEG 184 (335)
Q Consensus 171 d~~~~~I~~~d~~g 184 (335)
++...+|.|+-.+|
T Consensus 75 Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 75 ETGRYRILRYWLKG 88 (89)
T ss_dssp EGGGTEEEEEESSS
T ss_pred eccCceEEEEEEeC
Confidence 99999999987665
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0006 Score=65.78 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=103.0
Q ss_pred eeeEEcCCCCEEEEE-ec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 52 ETAKWDDVGRRFLVS-FL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.+++|+|+|+.++.. .. ...|+.+|..+++ .. .+...++ .....+++|++..|+++. +..+. .
T Consensus 199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-----~~--~l~~~~g----~~~~~~~SPDG~~la~~~-~~~g~--~ 264 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-----RR--VVANFKG----SNSAPAWSPDGRTLAVAL-SRDGN--S 264 (427)
T ss_pred ccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-----EE--EeecCCC----CccceEECCCCCEEEEEE-ccCCC--c
Confidence 478999999866554 32 2469999965444 11 1222222 234678888555665542 22222 4
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EE-EEeC-CCCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AY-VTDV-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-ly-V~d~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
.|+.+|.+++........ ........++|||+ ++ +++. ....||+++.++...+.+. +.. .
T Consensus 265 ~Iy~~d~~~~~~~~lt~~------~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt---~~g-------~ 328 (427)
T PRK02889 265 QIYTVNADGSGLRRLTQS------SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT---FTG-------S 328 (427)
T ss_pred eEEEEECCCCCcEECCCC------CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe---cCC-------C
Confidence 699999887764422111 12234567999996 44 4442 3568999987754433211 111 1
Q ss_pred ccCeEEEccCC-eEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEE
Q 039428 206 GLNGIVYHPDG-FLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVA 268 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va 268 (335)
.....+++||| .|+++...+ .+|+++|..++ ..+.+. .+ . ......+.++|+ ++.+
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g--~~~~lt-~~-~---~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG--QVTALT-DT-T---RDESPSFAPNGRYILYA 388 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCC--CeEEcc-CC-C---CccCceECCCCCEEEEE
Confidence 12356899999 666555443 37999998876 333332 12 1 124568889985 4444
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0011 Score=62.75 Aligned_cols=194 Identities=18% Similarity=0.159 Sum_probs=102.3
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
.+++++ ++.+|+...++.|+.+|..+|+. + |.. .+. ....+.+++ ++++|+.+.+ +.|
T Consensus 59 ~~p~v~--~~~v~v~~~~g~v~a~d~~tG~~----~----W~~~~~~---~~~~~p~v~--~~~v~v~~~~------g~l 117 (377)
T TIGR03300 59 LQPAVA--GGKVYAADADGTVVALDAETGKR----L----WRVDLDE---RLSGGVGAD--GGLVFVGTEK------GEV 117 (377)
T ss_pred cceEEE--CCEEEEECCCCeEEEEEccCCcE----e----eeecCCC---CcccceEEc--CCEEEEEcCC------CEE
Confidence 355665 45667776678999999766761 1 321 111 112345665 6899995332 359
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCe
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
+.+|.++|++.+........ ... .++ .++.+|+. ...+.|+.+|++ |+........ .+ .........
T Consensus 118 ~ald~~tG~~~W~~~~~~~~--~~~---p~v-~~~~v~v~-~~~g~l~a~d~~tG~~~W~~~~~---~~--~~~~~~~~s 185 (377)
T TIGR03300 118 IALDAEDGKELWRAKLSSEV--LSP---PLV-ANGLVVVR-TNDGRLTALDAATGERLWTYSRV---TP--ALTLRGSAS 185 (377)
T ss_pred EEEECCCCcEeeeeccCcee--ecC---CEE-ECCEEEEE-CCCCeEEEEEcCCCceeeEEccC---CC--ceeecCCCC
Confidence 99999999988766542210 111 222 24677775 456889999985 5554322110 00 000001112
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCc---C---CCCCCe-EEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGS---S---LSLGDG-LALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~---~---~~~pdG-ia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
.++. ++.+|+.. .+++++.+|+..++ ........... . +...++ ..+ .++.+|+++.. +.+..++...
T Consensus 186 p~~~-~~~v~~~~-~~g~v~ald~~tG~-~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~-g~l~a~d~~t 260 (377)
T TIGR03300 186 PVIA-DGGVLVGF-AGGKLVALDLQTGQ-PLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQ-GRVAALDLRS 260 (377)
T ss_pred CEEE-CCEEEEEC-CCCEEEEEEccCCC-EeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcC-CEEEEEECCC
Confidence 2333 45666554 56789999987763 22222211100 0 000011 122 25688887552 5677777655
Q ss_pred C
Q 039428 283 G 283 (335)
Q Consensus 283 ~ 283 (335)
+
T Consensus 261 G 261 (377)
T TIGR03300 261 G 261 (377)
T ss_pred C
Confidence 5
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00031 Score=63.57 Aligned_cols=198 Identities=15% Similarity=0.111 Sum_probs=119.5
Q ss_pred eeEEcCCCCEEEEEec-----CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC--
Q 039428 53 TAKWDDVGRRFLVSFL-----DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN-- 125 (335)
Q Consensus 53 gia~d~~g~~~~~~~~-----~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~-- 125 (335)
--+++++|+++|++.. .|.|-++|.. ..+ +.+. +++. .|..|+-|.+.+++..|.|+|....-+
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~--~ri~-----E~~s-~GIGPHel~l~pDG~tLvVANGGI~Thpd 125 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAA-RGY--RRIG-----EFPS-HGIGPHELLLMPDGETLVVANGGIETHPD 125 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECc-CCc--EEEe-----EecC-CCcChhhEEEcCCCCEEEEEcCCCccCcc
Confidence 3478999999999932 3689999964 332 1122 2232 235799999998444899976432211
Q ss_pred --c--------cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC-------CeEEEEccCCcEEE
Q 039428 126 --K--------YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS-------SKIWKVGVEGQLLS 188 (335)
Q Consensus 126 --~--------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~-------~~I~~~d~~g~~~~ 188 (335)
+ ...|..+|..+|+++-...++.. ........++++++|.++++.... .-|..++.++. .+
T Consensus 126 ~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~-~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~ 203 (305)
T PF07433_consen 126 SGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD-LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LR 203 (305)
T ss_pred cCceecChhhcCCceEEEecCCCceeeeeecCcc-ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ce
Confidence 0 14577888899988755555322 124567789999999999986543 34445554443 22
Q ss_pred EecCCcccccc--ccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcE
Q 039428 189 IIRSPLFTAKE--WYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKL 265 (335)
Q Consensus 189 ~~~~~~~~~~~--~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l 265 (335)
.+ ..|+ ...-....-.||++++| .+.++....+++..+|..++. .+....+. -.-|++..+++
T Consensus 204 ~~-----~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~-~~~~~~l~------D~cGva~~~~~-- 269 (305)
T PF07433_consen 204 LL-----PAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR-LLGSVPLP------DACGVAPTDDG-- 269 (305)
T ss_pred ec-----cCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC-EeeccccC------ceeeeeecCCc--
Confidence 21 1111 01111235689999998 677888889999999988873 33333322 13356666655
Q ss_pred EEEecCCCeE
Q 039428 266 VVAGNPYPSA 275 (335)
Q Consensus 266 ~va~~~~~~~ 275 (335)
|+...+.+.+
T Consensus 270 f~~ssG~G~~ 279 (305)
T PF07433_consen 270 FLVSSGQGQL 279 (305)
T ss_pred eEEeCCCccE
Confidence 4444432433
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-05 Score=75.62 Aligned_cols=195 Identities=10% Similarity=0.023 Sum_probs=120.7
Q ss_pred EcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCC----------
Q 039428 56 WDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLG---------- 124 (335)
Q Consensus 56 ~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~---------- 124 (335)
++++|+.++.. ...+.+..+|.. .. ++..+ +. .+ ..|..+.++++++.+|+++.++..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~e-tm---eV~~q--V~-Vd----gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~ 268 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAE-TM---EVAWQ--VM-VD----GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA 268 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECc-cc---eEEEE--EE-eC----CCcccceECCCCCEEEEeccCcccCcceeeeccc
Confidence 45567644443 445778888853 32 12221 21 12 367889999878889887522210
Q ss_pred C------------------------ccceEEEEECCC-----CeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCC
Q 039428 125 N------------------------KYSALAAYDLST-----WKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVS 174 (335)
Q Consensus 125 ~------------------------~~~~v~~~d~~~-----~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~ 174 (335)
. ..+.|.++|..+ .++...++. ...|+++.++|||+ +|++....
T Consensus 269 e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV------GKsPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 269 ERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV------PKNPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred cCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC------CCCccceEECCCCCEEEEeCCCC
Confidence 0 013467777665 234333333 57899999999995 99999999
Q ss_pred CeEEEEccCCcEEEEecCCcccc----ccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCC-------c--eeEE
Q 039428 175 SKIWKVGVEGQLLSIIRSPLFTA----KEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE-------E--EEVK 241 (335)
Q Consensus 175 ~~I~~~d~~g~~~~~~~~~~~~~----~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~-------~--~~~~ 241 (335)
+.|.++|...... .+... +.. -...+.+.+|-..+|+++|+.|++-.-..+|.+.+++.. + ..+.
T Consensus 343 ~tVSVIDv~k~k~-~~~~~-~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~ 420 (635)
T PRK02888 343 PTVTVIDVRKLDD-LFDGK-IKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQ 420 (635)
T ss_pred CcEEEEEChhhhh-hhhcc-CCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCccee
Confidence 9999999864221 11110 000 001234567999999999999999999999999998761 1 0223
Q ss_pred EEecc--CCcCCCCCCeEEEcCCCcEEEEec
Q 039428 242 LIELR--GGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 242 ~~~~~--g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
.+++. .++ +..+.|=..+++|+++++-+
T Consensus 421 k~dV~y~pgh-~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 421 KLDVHYQPGH-NHASMGETKEADGKWLVSLN 450 (635)
T ss_pred cccCCCccce-eeecCCCcCCCCCCEEEEcc
Confidence 33321 112 23456666789999888844
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00068 Score=58.82 Aligned_cols=211 Identities=12% Similarity=0.085 Sum_probs=130.3
Q ss_pred EEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEec
Q 039428 42 YQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD 121 (335)
Q Consensus 42 ~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D 121 (335)
+.+.+...--..+.+..+|+..|.+..+|++..||...-. .. +..+.+. ..+.+.++|.++.|++ +|
T Consensus 77 ~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~-----~q--R~~~~~s----pVn~vvlhpnQteLis--~d 143 (311)
T KOG0315|consen 77 ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-----CQ--RNYQHNS----PVNTVVLHPNQTELIS--GD 143 (311)
T ss_pred eEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc-----cc--hhccCCC----CcceEEecCCcceEEe--ec
Confidence 3343333345677899999988888889999999853211 11 1222221 4578899998889999 56
Q ss_pred CCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE-EEEecC-Ccccccc
Q 039428 122 VLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL-LSIIRS-PLFTAKE 199 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~-~~~~~~-~~~~~~~ 199 (335)
..+ .|++||+....-. -.+- |.. ......+++++||.+.++-...|+.|+++.-+.. ...+.- ..|..
T Consensus 144 qsg----~irvWDl~~~~c~--~~li-Pe~-~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a-- 213 (311)
T KOG0315|consen 144 QSG----NIRVWDLGENSCT--HELI-PED-DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA-- 213 (311)
T ss_pred CCC----cEEEEEccCCccc--cccC-CCC-CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec--
Confidence 554 4999998765222 1111 111 3556779999999988888888999998864321 110100 01110
Q ss_pred ccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 200 WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
.-...--.-++||+..+++-+....++.+..++- ......+.+.. .--.+.+|..||.+.|+....+..+..+
T Consensus 214 ---h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~--rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 214 ---HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQ--RWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred ---ccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCC--ceEEeeeeccCccEEEecCCCCceeecc
Confidence 1112334578999988888888888888877764 11222222311 3468899999999888855335555555
Q ss_pred cCC
Q 039428 280 SSD 282 (335)
Q Consensus 280 ~~~ 282 (335)
...
T Consensus 287 ~~~ 289 (311)
T KOG0315|consen 287 LSA 289 (311)
T ss_pred ccc
Confidence 443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00094 Score=64.40 Aligned_cols=193 Identities=18% Similarity=0.210 Sum_probs=108.5
Q ss_pred eeeeEEcCCCCEEE-EEec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 51 CETAKWDDVGRRFL-VSFL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 51 pegia~d~~g~~~~-~~~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
...++|+|+|+.++ ++.. ...|++++..+++ .. .+...++ ......++|++..|++.. +..+.
T Consensus 201 ~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-----~~--~l~~~~g----~~~~~~~SpDG~~la~~~-~~~g~-- 266 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-----RE--QITNFEG----LNGAPAWSPDGSKLAFVL-SKDGN-- 266 (430)
T ss_pred eeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-----EE--EccCCCC----CcCCeEECCCCCEEEEEE-ccCCC--
Confidence 46789999998654 4433 2579999865444 11 1221222 223578887555565542 22222
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEE-eC-CCCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVT-DV-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~-d~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
..|+++|.++++....... ........+++||+ +|++ +. ....||+++.++...+.+. +..
T Consensus 267 ~~Iy~~d~~~~~~~~lt~~------~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt---~~~------- 330 (430)
T PRK00178 267 PEIYVMDLASRQLSRVTNH------PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT---FVG------- 330 (430)
T ss_pred ceEEEEECCCCCeEEcccC------CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee---cCC-------
Confidence 4699999998866532211 12234567889985 5554 32 2458999998654433221 110
Q ss_pred cccCeEEEccCC-eEEEEECCCC--EEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEec--CCCeEEEE
Q 039428 205 FGLNGIVYHPDG-FLIVIHMCSG--NLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGN--PYPSARLV 278 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~~~~--~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~--~~~~~~v~ 278 (335)
......+++||| .|+++....+ .|+++|+.++ ..+.+...+ . .....+.++|+ ++.+.. +...+.++
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg--~~~~lt~~~-~----~~~p~~spdg~~i~~~~~~~g~~~l~~~ 403 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG--SVRILTDTS-L----DESPSVAPNGTMLIYATRQQGRGVLMLV 403 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCC--CEEEccCCC-C----CCCceECCCCCEEEEEEecCCceEEEEE
Confidence 112346899999 7777765443 6999999887 444443211 1 22447888886 434432 11234555
Q ss_pred Ec
Q 039428 279 ES 280 (335)
Q Consensus 279 ~~ 280 (335)
+.
T Consensus 404 ~~ 405 (430)
T PRK00178 404 SI 405 (430)
T ss_pred EC
Confidence 54
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00031 Score=66.95 Aligned_cols=217 Identities=13% Similarity=0.121 Sum_probs=112.3
Q ss_pred CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeec---CCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCC
Q 039428 61 RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKE---DDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLST 137 (335)
Q Consensus 61 ~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~---~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~ 137 (335)
+.+|+...++.|+.+|..+|+. + |... +.........-.+. ++.+|+...+ +.++.+|+++
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~----~----W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~~------g~v~a~d~~~ 224 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAV----K----WTVNLDVPSLTLRGESAPATA--FGGAIVGGDN------GRVSAVLMEQ 224 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCE----e----eeecCCCCcccccCCCCCEEE--CCEEEEEcCC------CEEEEEEccC
Confidence 3555665678999999777761 1 3211 11100001122333 4678884322 3599999999
Q ss_pred CeEEEEeecCCCcc--CCCCCCceeEC---CCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEE
Q 039428 138 WKRLFLTQLSGKSE--EKSTADDIAVD---AEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVY 212 (335)
Q Consensus 138 ~~~~~~~~~~~~~~--~~~~p~~~~vd---~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~ 212 (335)
|+..+......+.. ......++... .+|.+|+++. .+.++.+|+...... +..+ +. .+..+++
T Consensus 225 G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~g~l~ald~~tG~~~-W~~~-~~---------~~~~~~~ 292 (394)
T PRK11138 225 GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-NGNLVALDLRSGQIV-WKRE-YG---------SVNDFAV 292 (394)
T ss_pred ChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-CCeEEEEECCCCCEE-Eeec-CC---------CccCcEE
Confidence 98776544322110 00001111111 2578998764 579999998643322 2111 11 1334455
Q ss_pred ccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeee
Q 039428 213 HPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAK 292 (335)
Q Consensus 213 ~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~ 292 (335)
. +++||+.+ .+++|+.+|+.+++ ..-........... ..++ .+|.+|+.+.. +.+.+++..+| +++.+
T Consensus 293 ~-~~~vy~~~-~~g~l~ald~~tG~-~~W~~~~~~~~~~~---sp~v-~~g~l~v~~~~-G~l~~ld~~tG----~~~~~ 360 (394)
T PRK11138 293 D-GGRIYLVD-QNDRVYALDTRGGV-ELWSQSDLLHRLLT---APVL-YNGYLVVGDSE-GYLHWINREDG----RFVAQ 360 (394)
T ss_pred E-CCEEEEEc-CCCeEEEEECCCCc-EEEcccccCCCccc---CCEE-ECCEEEEEeCC-CEEEEEECCCC----CEEEE
Confidence 4 67999887 57889999998763 21111111111111 2233 35789988652 55777776655 23333
Q ss_pred ecCCCCCcceEEEEeCCeEEEEecc
Q 039428 293 FNGPTHRVATAATVKDGRVYLSHLL 317 (335)
Q Consensus 293 ~~~p~~~~Pt~va~~~g~lyV~~~~ 317 (335)
...+......+-.+.+++|||....
T Consensus 361 ~~~~~~~~~s~P~~~~~~l~v~t~~ 385 (394)
T PRK11138 361 QKVDSSGFLSEPVVADDKLLIQARD 385 (394)
T ss_pred EEcCCCcceeCCEEECCEEEEEeCC
Confidence 2211111222334568899996543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00059 Score=65.90 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=103.1
Q ss_pred eeeeEEcCCCCEEEEE-ecC--CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 51 CETAKWDDVGRRFLVS-FLD--GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~~--~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
-..++|+|+|+.++.. ..+ ..|+.+|..+++ .. .+...++ ....++++|++..|+++ .+..+.
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~-----~~--~l~~~~g----~~~~~~wSPDG~~La~~-~~~~g~-- 271 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA-----RK--VVASFRG----HNGAPAFSPDGSRLAFA-SSKDGV-- 271 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc-----eE--EEecCCC----ccCceeECCCCCEEEEE-EecCCc--
Confidence 4689999999866554 322 479999864443 11 1222222 22357888844455554 222222
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEE-eC-CCCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVT-DV-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~-d~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
..|+.+|.++++....... .......+++|||+ ++++ +. ....||.++.++...+.+..
T Consensus 272 ~~Iy~~d~~~~~~~~lt~~------~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~------------ 333 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTSG------AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG------------ 333 (429)
T ss_pred EEEEEEECCCCCeEeeccC------CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC------------
Confidence 3589999987765432211 22345789999996 5544 32 35688999887665443210
Q ss_pred cccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 205 FGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
.+ ...+++||| .|+++.. ..++++|+.++ ..+.+. .. . .-..+.+.|+|++++.
T Consensus 334 ~~-~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g--~~~~lt-~~-~---~~~~~~~sPdG~~i~~ 388 (429)
T PRK01742 334 RG-YSAQISADGKTLVMING--DNVVKQDLTSG--STEVLS-ST-F---LDESPSISPNGIMIIY 388 (429)
T ss_pred CC-CCccCCCCCCEEEEEcC--CCEEEEECCCC--CeEEec-CC-C---CCCCceECCCCCEEEE
Confidence 01 246789999 6666543 56888998876 333332 11 1 1245678999975555
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0019 Score=64.09 Aligned_cols=216 Identities=9% Similarity=0.049 Sum_probs=120.9
Q ss_pred EcCCCcceeeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 44 YHSPSFLCETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 44 ~~~~~~~pegia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
+.+.......++|+|. +++++++..++.|..||..++...-+.+.+ ......+. ......++++|....++++.+ .
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~-p~~~L~gH-~~~V~sVaf~P~g~~iLaSgS-~ 146 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD-PQCILKGH-KKKISIIDWNPMNYYIMCSSG-F 146 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccccc-ceEEeecC-CCcEEEEEECCCCCeEEEEEe-C
Confidence 3443445689999997 677766688999999986533210000000 01011111 135678999984444544322 1
Q ss_pred CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEE-EEecCCcccccccc
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLL-SIIRSPLFTAKEWY 201 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~-~~~~~~~~~~~~~~ 201 (335)
+ ..|..||.++++....... ......++++++|+++++....+.|..+|+..... ..+.. ...
T Consensus 147 --D--gtIrIWDl~tg~~~~~i~~------~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g--H~g---- 210 (568)
T PTZ00420 147 --D--SFVNIWDIENEKRAFQINM------PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI--HDG---- 210 (568)
T ss_pred --C--CeEEEEECCCCcEEEEEec------CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec--ccC----
Confidence 1 3599999998876543322 23456899999999998877888999999875432 21211 000
Q ss_pred ccccccCe---EEEccCC-eEEEEECCC---CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC-CCcEEEEecCCC
Q 039428 202 KNVFGLNG---IVYHPDG-FLIVIHMCS---GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS-PTKLVVAGNPYP 273 (335)
Q Consensus 202 ~~~~~p~G---ia~~~dg-~Lyvad~~~---~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~-~g~l~va~~~~~ 273 (335)
...... ..+++++ .|..+.... ++|..+|+......+..+.+.. . ..+--..+|+ +|.+|+++.+.+
T Consensus 211 --~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~--~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 211 --GKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-A--SAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred --CceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-C--ccceEEeeeCCCCCEEEEEECCC
Confidence 000011 1234676 444443332 4788888885321444444322 1 1111123344 478999987778
Q ss_pred eEEEEEcCCC
Q 039428 274 SARLVESSDG 283 (335)
Q Consensus 274 ~~~v~~~~~~ 283 (335)
.++++....+
T Consensus 286 tIr~~e~~~~ 295 (568)
T PTZ00420 286 NCRYYQHSLG 295 (568)
T ss_pred eEEEEEccCC
Confidence 8998887654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0024 Score=62.64 Aligned_cols=209 Identities=11% Similarity=0.084 Sum_probs=120.6
Q ss_pred ceeeeEEcC-CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDD-VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~-~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.-.+++|+| ++++++++..++.|..||.+++.......+ ......+. ......++++|..++++++.+ . + .
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~--~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs-~--D--g 148 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISD--PIVHLQGH-TKKVGIVSFHPSAMNVLASAG-A--D--M 148 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCc--ceEEecCC-CCcEEEEEeCcCCCCEEEEEe-C--C--C
Confidence 357899999 777777778899999998644321000000 01111111 134678999975445555422 1 1 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCcccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
.|..||.++++....... . ....+.+++.++|++.++.+..+.|..+|+.. +....+.. . .....
T Consensus 149 tVrIWDl~tg~~~~~l~~--h---~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~---H------~~~~~ 214 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKC--H---SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA---H------ASAKS 214 (493)
T ss_pred EEEEEECCCCeEEEEEcC--C---CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEec---C------CCCcc
Confidence 599999998866533221 1 24567899999999999988899999999864 33322211 0 01113
Q ss_pred CeEEEccCCeEEEEE----CCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcE-EEEecCCCeEEEEEcCC
Q 039428 208 NGIVYHPDGFLIVIH----MCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKL-VVAGNPYPSARLVESSD 282 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad----~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l-~va~~~~~~~~v~~~~~ 282 (335)
..+.+.+++.++++- ...++|..+|+...+.....+.... . ....-..+++++++ |+++.+.+.+++++..+
T Consensus 215 ~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~-~--~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 215 QRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ-S--SALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred eEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC-C--CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 456777776444432 2357888889876421222232211 1 11122356888764 44444456788888765
Q ss_pred C
Q 039428 283 G 283 (335)
Q Consensus 283 ~ 283 (335)
+
T Consensus 292 ~ 292 (493)
T PTZ00421 292 E 292 (493)
T ss_pred C
Confidence 4
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0038 Score=55.84 Aligned_cols=207 Identities=14% Similarity=0.114 Sum_probs=125.2
Q ss_pred CCCcceeeeEEcCCCC-EEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC
Q 039428 46 SPSFLCETAKWDDVGR-RFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 46 ~~~~~pegia~d~~g~-~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
.....++-+.+....+ +++.+ ..+.+|..++..+.++ +. . +++.. ...+.|.+.| .+..++..+
T Consensus 54 skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky----lR---Y--F~GH~-~~V~sL~~sP-~~d~FlS~S--- 119 (311)
T KOG1446|consen 54 SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY----LR---Y--FPGHK-KRVNSLSVSP-KDDTFLSSS--- 119 (311)
T ss_pred cccccccEEEEecCCceEEEccCCCCCceEEEEeecCce----EE---E--cCCCC-ceEEEEEecC-CCCeEEecc---
Confidence 3334455555544433 44444 3467888887654442 21 2 34432 4678999998 456666321
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC---cEEEEecCCccccccc
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG---QLLSIIRSPLFTAKEW 200 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g---~~~~~~~~~~~~~~~~ 200 (335)
.+ ..|.-||++..+-.....+ ..+.=.|+||+|-++++...+..|..+|... ..... |..+
T Consensus 120 ~D--~tvrLWDlR~~~cqg~l~~-------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~t-----f~i~-- 183 (311)
T KOG1446|consen 120 LD--KTVRLWDLRVKKCQGLLNL-------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTT-----FSIT-- 183 (311)
T ss_pred cC--CeEEeeEecCCCCceEEec-------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCcee-----EccC--
Confidence 22 3599999885432222222 2334489999998888877777888888641 11111 1111
Q ss_pred cccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 201 YKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
.+....-+.|.|+||| .|.++. .++.++.+|.=.+. ....+.... .....|-...+.||++.++++...+.+.+..
T Consensus 184 ~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~-~~~tfs~~~-~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 184 DNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGT-VKSTFSGYP-NAGNLPLSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred CCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCc-EeeeEeecc-CCCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence 0123457899999999 566554 67778889887663 444554322 1134576788889999888876557787777
Q ss_pred cCCCcE
Q 039428 280 SSDGWE 285 (335)
Q Consensus 280 ~~~~~~ 285 (335)
...+-+
T Consensus 261 ~~tg~~ 266 (311)
T KOG1446|consen 261 LETGKK 266 (311)
T ss_pred cCCCcE
Confidence 766533
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0014 Score=62.72 Aligned_cols=181 Identities=15% Similarity=0.177 Sum_probs=104.7
Q ss_pred eeeeEEcCCCCEEEEE-ecC--CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 51 CETAKWDDVGRRFLVS-FLD--GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~~--~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
...++|+|+|+.++.. ... ..|+++|..+++ .. .+...++ ....+++++++..|+++. +..+.
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-----~~--~~~~~~~----~~~~~~~spDg~~l~~~~-~~~~~-- 257 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-----RE--KVASFPG----MNGAPAFSPDGSKLAVSL-SKDGN-- 257 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-----EE--EeecCCC----CccceEECCCCCEEEEEE-CCCCC--
Confidence 3467899999976665 322 579999865453 11 1221222 234578887555676642 22222
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEE-EeC-CCCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYV-TDV-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV-~d~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
..|+.+|..+++....... ........+.+||+ +++ ++. ....||+++.++...+.+. +. .
T Consensus 258 ~~i~~~d~~~~~~~~l~~~------~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~---~~-------~ 321 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNG------PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT---FR-------G 321 (417)
T ss_pred ccEEEEECCCCCEEECCCC------CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee---cC-------C
Confidence 3599999988765422211 11223457788886 544 332 2458999998765433221 00 1
Q ss_pred cccCeEEEccCC-eEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEE
Q 039428 205 FGLNGIVYHPDG-FLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVA 268 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va 268 (335)
.....++++||| .++++.... .+|+.+|+.++ ..+.+.... . .....+.++|+ |+++
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~-~----~~~p~~spdg~~l~~~ 382 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG--GERVLTDTG-L----DESPSFAPNGRMILYA 382 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC--CeEEccCCC-C----CCCceECCCCCEEEEE
Confidence 224577999999 677766543 38999999876 445443221 1 23456778875 4444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-06 Score=49.32 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=25.6
Q ss_pred CCCCCceeECCCCcEEEEeCCCCeEEEE
Q 039428 153 KSTADDIAVDAEGNAYVTDVVSSKIWKV 180 (335)
Q Consensus 153 ~~~p~~~~vd~~G~lyV~d~~~~~I~~~ 180 (335)
+..|.|+++|++|++||+|+.+++|+++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3579999999999999999999999986
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00036 Score=64.86 Aligned_cols=168 Identities=17% Similarity=0.222 Sum_probs=98.2
Q ss_pred CcceEEEeCCCCeEEEEEecCCC-CccceEEEEECCC--C---eEE--EEeecCCC-ccCC----CCCCceeECCCCcEE
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLG-NKYSALAAYDLST--W---KRL--FLTQLSGK-SEEK----STADDIAVDAEGNAY 168 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~-~~~~~v~~~d~~~--~---~~~--~~~~~~~~-~~~~----~~p~~~~vd~~G~ly 168 (335)
.-.||.+++.++++|+. +|... ....+++.++... + .+. ....+..+ +..+ .-+.+|++.++|.+|
T Consensus 21 GlSgl~~~~~~~~~~av-SD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAV-SDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred cEeeEEEeCCCCEEEEE-ECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45799999657777776 56543 1113466555432 1 111 11222221 1101 145589998899999
Q ss_pred EEeCCC------CeEEEEccCCcEEEEecCCc-ccc-c---cccccccccCeEEEccCC-eEEEEECCC-----------
Q 039428 169 VTDVVS------SKIWKVGVEGQLLSIIRSPL-FTA-K---EWYKNVFGLNGIVYHPDG-FLIVIHMCS----------- 225 (335)
Q Consensus 169 V~d~~~------~~I~~~d~~g~~~~~~~~~~-~~~-~---~~~~~~~~p~Gia~~~dg-~Lyvad~~~----------- 225 (335)
|++... ++|++++++|+....+.-+. +.. . .....-.+..||++++|| .||++....
T Consensus 100 is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~ 179 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPD 179 (326)
T ss_pred EEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccc
Confidence 999999 99999999988765432111 110 0 112233468999999999 488765432
Q ss_pred ----CEEEEEeCCCCceeE--EEEeccCC---cCCCCCCeEEEcCCCcEEEEec
Q 039428 226 ----GNLFKIDIRKEEEEV--KLIELRGG---SSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 226 ----~~v~~~d~~~~~~~~--~~~~~~g~---~~~~~pdGia~d~~g~l~va~~ 270 (335)
-+|+++|+...+... ..+.+..- .....+..++..++++++|-+.
T Consensus 180 ~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 180 NGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred cCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 478899987631012 22333210 0123466677778888888844
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0021 Score=60.82 Aligned_cols=194 Identities=18% Similarity=0.154 Sum_probs=100.4
Q ss_pred eeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 53 TAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 53 gia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
+++++ ++.+|+...++.|+.+|..+|+ ++ |.... .+.......++ ++.+|+...+ ..|+.
T Consensus 100 ~p~v~--~~~v~v~~~~g~l~ald~~tG~----~~----W~~~~--~~~~~~~p~v~--~~~v~v~~~~------g~l~a 159 (377)
T TIGR03300 100 GVGAD--GGLVFVGTEKGEVIALDAEDGK----EL----WRAKL--SSEVLSPPLVA--NGLVVVRTND------GRLTA 159 (377)
T ss_pred ceEEc--CCEEEEEcCCCEEEEEECCCCc----Ee----eeecc--CceeecCCEEE--CCEEEEECCC------CeEEE
Confidence 45554 4456666567899999975665 11 32111 11011122333 5788885322 35999
Q ss_pred EECCCCeEEEEeecCCCccCC-CCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCcccccccc---cccccc
Q 039428 133 YDLSTWKRLFLTQLSGKSEEK-STADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWY---KNVFGL 207 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~-~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~---~~~~~p 207 (335)
+|+++|+.++......+.... ....-+.. +|.+|+. ...+.++.+|+. |+...... +..+... ......
T Consensus 160 ~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~-~~~g~v~ald~~tG~~~W~~~---~~~~~g~~~~~~~~~~ 233 (377)
T TIGR03300 160 LDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVG-FAGGKLVALDLQTGQPLWEQR---VALPKGRTELERLVDV 233 (377)
T ss_pred EEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEE-CCCCEEEEEEccCCCEeeeec---cccCCCCCchhhhhcc
Confidence 999999888665442211000 11112322 3567765 456799999975 54432110 1100000 000000
Q ss_pred -CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 208 -NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 208 -~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
....+. ++.+|++. .++.++.+|++.++ ....... + ....++++ ++++|++.. .+.+..++..++
T Consensus 234 ~~~p~~~-~~~vy~~~-~~g~l~a~d~~tG~-~~W~~~~-~-----~~~~p~~~-~~~vyv~~~-~G~l~~~d~~tG 299 (377)
T TIGR03300 234 DGDPVVD-GGQVYAVS-YQGRVAALDLRSGR-VLWKRDA-S-----SYQGPAVD-DNRLYVTDA-DGVVVALDRRSG 299 (377)
T ss_pred CCccEEE-CCEEEEEE-cCCEEEEEECCCCc-EEEeecc-C-----CccCceEe-CCEEEEECC-CCeEEEEECCCC
Confidence 112233 56888876 46789999998763 2222221 1 12334444 478888854 256777777655
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0017 Score=62.69 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=90.8
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeC--CCCeEEE
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV--VSSKIWK 179 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~--~~~~I~~ 179 (335)
....+++|++..|..+ ....+. ..|+.+|.++++........ ......+++|||+ ++++.. ....||.
T Consensus 201 ~~~p~wSPDG~~la~~-s~~~g~--~~i~i~dl~~G~~~~l~~~~------~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 201 LMSPAWSPDGSKLAYV-TFESGR--SALVIQTLANGAVRQVASFP------RHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred eeeeEEcCCCCEEEEE-EecCCC--cEEEEEECCCCCeEEccCCC------CCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 4578888854445443 222222 46999999888655333331 1233589999996 666533 2347999
Q ss_pred EccCCcEEEEecCCccccccccccccccCeEEEccCC-eEE-EEECC-CCEEEEEeCCCCceeEEEEeccCCcCCCCCCe
Q 039428 180 VGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLI-VIHMC-SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDG 256 (335)
Q Consensus 180 ~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Ly-vad~~-~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdG 256 (335)
+|.+++..+.+... .......+++||| .|+ +++.. ..+||+++++++ ..+.+...+ .....
T Consensus 272 ~d~~tg~~~~lt~~----------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g--~~~~lt~~~----~~~~~ 335 (429)
T PRK03629 272 MDLASGQIRQVTDG----------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG--APQRITWEG----SQNQD 335 (429)
T ss_pred EECCCCCEEEccCC----------CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC--CeEEeecCC----CCccC
Confidence 99886554422111 1124678999999 564 44432 348999999876 444443322 12345
Q ss_pred EEEcCCCc-EEEEec--CCCeEEEEEcCCC
Q 039428 257 LALLSPTK-LVVAGN--PYPSARLVESSDG 283 (335)
Q Consensus 257 ia~d~~g~-l~va~~--~~~~~~v~~~~~~ 283 (335)
..+.++|+ ++++.. +...+.+++...+
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 77888886 333322 2234666766544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0016 Score=63.02 Aligned_cols=187 Identities=11% Similarity=0.114 Sum_probs=103.7
Q ss_pred CCEEEEEecC------CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEE
Q 039428 60 GRRFLVSFLD------GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAY 133 (335)
Q Consensus 60 g~~~~~~~~~------~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~ 133 (335)
.++.|++... .+|+.+|. ++.. .. .+.... ......+++|++..|+.+ .+..+. ..|+++
T Consensus 166 ~~iafv~~~~~~~~~~~~l~~~d~-dg~~----~~---~lt~~~---~~v~~p~wSpDG~~lay~-s~~~g~--~~i~~~ 231 (435)
T PRK05137 166 TRIVYVAESGPKNKRIKRLAIMDQ-DGAN----VR---YLTDGS---SLVLTPRFSPNRQEITYM-SYANGR--PRVYLL 231 (435)
T ss_pred CeEEEEEeeCCCCCcceEEEEECC-CCCC----cE---EEecCC---CCeEeeEECCCCCEEEEE-EecCCC--CEEEEE
Confidence 3566666222 37888874 4542 11 222211 134567788754455443 222222 469999
Q ss_pred ECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeC--CCCeEEEEccCCcEEEEecCCccccccccccccccCeE
Q 039428 134 DLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV--VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~--~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
|+++++........ ......++.|||+ ++++-. .+..||++|.+++..+.+... .......
T Consensus 232 dl~~g~~~~l~~~~------g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~----------~~~~~~~ 295 (435)
T PRK05137 232 DLETGQRELVGNFP------GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDS----------PAIDTSP 295 (435)
T ss_pred ECCCCcEEEeecCC------CcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCC----------CCccCce
Confidence 99988665333221 1234678999996 555533 345799999887655432110 0113457
Q ss_pred EEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEec--CCCeEEEEEcCC
Q 039428 211 VYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGN--PYPSARLVESSD 282 (335)
Q Consensus 211 a~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~--~~~~~~v~~~~~ 282 (335)
+++||| +|+++... ..+|+++|.+++ ..+.+...+.. -....+.++|+ ++++.. +...+.+++...
T Consensus 296 ~~spDG~~i~f~s~~~g~~~Iy~~d~~g~--~~~~lt~~~~~----~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~ 367 (435)
T PRK05137 296 SYSPDGSQIVFESDRSGSPQLYVMNADGS--NPRRISFGGGR----YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG 367 (435)
T ss_pred eEcCCCCEEEEEECCCCCCeEEEEECCCC--CeEEeecCCCc----ccCeEECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 999999 66655433 358999999876 44544322211 23467888885 444432 223466666543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0021 Score=62.49 Aligned_cols=155 Identities=14% Similarity=0.154 Sum_probs=89.9
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCC--CCeEEEE
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVV--SSKIWKV 180 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~--~~~I~~~ 180 (335)
....++|++..|+.+. +..+. ..|+.+|.++++........ ......+++|||+ ++++... +..||++
T Consensus 221 ~~p~wSPDG~~La~~s-~~~g~--~~L~~~dl~tg~~~~lt~~~------g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 221 MSPAWSPDGRKLAYVS-FENRK--AEIFVQDIYTQVREKVTSFP------GINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred cCceECCCCCEEEEEE-ecCCC--cEEEEEECCCCCeEEecCCC------CCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 4567887555555432 22222 46999999988654332221 1223578999996 6655333 3479999
Q ss_pred ccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeE
Q 039428 181 GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGL 257 (335)
Q Consensus 181 d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGi 257 (335)
|.+++..+.+... .......+++||| +|+++... ..+||+++++++ ..+.+...+ . ...+.
T Consensus 292 dl~tg~~~~lt~~----------~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g--~~~~Lt~~g-~---~~~~~ 355 (448)
T PRK04792 292 DIATKALTRITRH----------RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG--KVSRLTFEG-E---QNLGG 355 (448)
T ss_pred ECCCCCeEECccC----------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCC--CEEEEecCC-C---CCcCe
Confidence 9887654432111 1124567899999 67665432 458999999876 444443223 1 12346
Q ss_pred EEcCCCc-EEEEecCC--CeEEEEEcCCC
Q 039428 258 ALLSPTK-LVVAGNPY--PSARLVESSDG 283 (335)
Q Consensus 258 a~d~~g~-l~va~~~~--~~~~v~~~~~~ 283 (335)
++.++|+ ++++.... ..+.+++...+
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 8888885 55553322 24555665544
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0016 Score=63.34 Aligned_cols=207 Identities=16% Similarity=0.125 Sum_probs=128.4
Q ss_pred CCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 46 SPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
+....-.+++|.++|..++....+.+|..||..+... .+ +.+.... +..+.+++++ .+++++...+.
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~---~~---~~l~gH~---~~v~~~~f~p-~g~~i~Sgs~D--- 267 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR---NL---KTLKGHS---TYVTSVAFSP-DGNLLVSGSDD--- 267 (456)
T ss_pred ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe---EE---EEecCCC---CceEEEEecC-CCCEEEEecCC---
Confidence 3344567999999998665558889999998633321 11 1222221 3568999998 56777743221
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEE---EEecCCccccccccc
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLL---SIIRSPLFTAKEWYK 202 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~---~~~~~~~~~~~~~~~ 202 (335)
..|..||.++++....... . ...-+.+++.++|+.+++.+..+.|..+|..+... ..+......
T Consensus 268 --~tvriWd~~~~~~~~~l~~--h---s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~------ 334 (456)
T KOG0266|consen 268 --GTVRIWDVRTGECVRKLKG--H---SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS------ 334 (456)
T ss_pred --CcEEEEeccCCeEEEeeec--c---CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC------
Confidence 4699999999877644332 1 34567799999999888888899999999986652 211111000
Q ss_pred cccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 203 NVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 203 ~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
. -..-++++|++..+++...++.+...|+.... .+..+...... ............|.+.+++.....+.+.....
T Consensus 335 -~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 335 -A-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK-SVGTYTGHSNL-VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred -C-ceeEEEECCCCcEEEEecCCCeEEEEEccCCc-ceeeecccCCc-ceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 0 24789999999555566677777777877653 33333311100 01122233345677777766556677766553
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00059 Score=57.84 Aligned_cols=191 Identities=16% Similarity=0.139 Sum_probs=115.3
Q ss_pred CCCcceeeeEEcCCCCEEEEE--ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC
Q 039428 46 SPSFLCETAKWDDVGRRFLVS--FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~--~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
....+.+|+-++. |+++..+ .....|.++|..+++ ++.++ -+..+.. -..||..- .+.+|..+- .
T Consensus 43 Ds~sfTQGL~~~~-g~i~esTG~yg~S~ir~~~L~~gq---~~~s~--~l~~~~~---FgEGit~~--gd~~y~LTw--~ 109 (262)
T COG3823 43 DSTSFTQGLEYLD-GHILESTGLYGFSKIRVSDLTTGQ---EIFSE--KLAPDTV---FGEGITKL--GDYFYQLTW--K 109 (262)
T ss_pred chhhhhcceeeeC-CEEEEeccccccceeEEEeccCce---EEEEe--ecCCccc---cccceeec--cceEEEEEe--c
Confidence 3455788998875 3544444 334679999865455 11221 2211222 23577664 688998642 1
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc----EEEEecCCcccccc
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ----LLSIIRSPLFTAKE 199 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~----~~~~~~~~~~~~~~ 199 (335)
. ..-++||+++-+..-....+ ..-++++-|.+ +++.+| ++..++.-||+.- .+.+-.++.
T Consensus 110 e---gvaf~~d~~t~~~lg~~~y~------GeGWgLt~d~~-~Limsd-GsatL~frdP~tfa~~~~v~VT~~g~----- 173 (262)
T COG3823 110 E---GVAFKYDADTLEELGRFSYE------GEGWGLTSDDK-NLIMSD-GSATLQFRDPKTFAELDTVQVTDDGV----- 173 (262)
T ss_pred c---ceeEEEChHHhhhhcccccC------CcceeeecCCc-ceEeeC-CceEEEecCHHHhhhcceEEEEECCe-----
Confidence 1 23678888775544222232 22356776544 477765 4567777777631 111111110
Q ss_pred ccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCC--------cCCCCCCeEEEcCCC-cEEEEec
Q 039428 200 WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGG--------SSLSLGDGLALLSPT-KLVVAGN 270 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~--------~~~~~pdGia~d~~g-~l~va~~ 270 (335)
.....|-+.+- ||.||..-..+.+|.|+++++++ .+..+++++= .....+.|+|.++++ ++|+++-
T Consensus 174 ---pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr-V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 174 ---PVSKLNELEWV-DGELYANVWQTTRIARIDPDSGR-VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ---ecccccceeee-ccEEEEeeeeecceEEEcCCCCc-EEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 11237888888 89999888899999999999985 6666665440 113468999999986 8999943
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0048 Score=53.94 Aligned_cols=195 Identities=21% Similarity=0.139 Sum_probs=106.1
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEE
Q 039428 55 KWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAY 133 (335)
Q Consensus 55 a~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~ 133 (335)
++..+ +.+|+...++.|+.+|..+|+ ++ |.. .++.. .. ...++ ++++|+...+ +.|+.+
T Consensus 32 ~~~~~-~~v~~~~~~~~l~~~d~~tG~----~~----W~~~~~~~~-~~--~~~~~--~~~v~v~~~~------~~l~~~ 91 (238)
T PF13360_consen 32 AVPDG-GRVYVASGDGNLYALDAKTGK----VL----WRFDLPGPI-SG--APVVD--GGRVYVGTSD------GSLYAL 91 (238)
T ss_dssp EEEET-TEEEEEETTSEEEEEETTTSE----EE----EEEECSSCG-GS--GEEEE--TTEEEEEETT------SEEEEE
T ss_pred EEEeC-CEEEEEcCCCEEEEEECCCCC----EE----EEeeccccc-cc--eeeec--ccccccccce------eeeEec
Confidence 44334 455555678999999966675 12 221 12211 11 13444 6899996532 359999
Q ss_pred ECCCCeEEEEe-ecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccc---cccccccC
Q 039428 134 DLSTWKRLFLT-QLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEW---YKNVFGLN 208 (335)
Q Consensus 134 d~~~~~~~~~~-~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~---~~~~~~p~ 208 (335)
|.++|++.+.. ....+......+...+++ ++.+|+... ++.|+.+|++ |+.+..... ..+.. .......+
T Consensus 92 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~~ 166 (238)
T PF13360_consen 92 DAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTS-SGKLVALDPKTGKLLWKYPV---GEPRGSSPISSFSDIN 166 (238)
T ss_dssp ETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEET-CSEEEEEETTTTEEEEEEES---STT-SS--EEEETTEE
T ss_pred ccCCcceeeeeccccccccccccccCceEe-cCEEEEEec-cCcEEEEecCCCcEEEEeec---CCCCCCcceeeecccc
Confidence 99999988764 322111112233445554 345777654 7899999976 555432211 11000 00001122
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
+-.+..++.+|++..... +..+|...+ ... +... ...+.......++.||+.+ ..+.+..++...+
T Consensus 167 ~~~~~~~~~v~~~~~~g~-~~~~d~~tg--~~~-w~~~----~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG 232 (238)
T PF13360_consen 167 GSPVISDGRVYVSSGDGR-VVAVDLATG--EKL-WSKP----ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTG 232 (238)
T ss_dssp EEEECCTTEEEEECCTSS-EEEEETTTT--EEE-EEEC----SS-ECECEECCCTEEEEEE-TTTEEEEEETTTT
T ss_pred cceEEECCEEEEEcCCCe-EEEEECCCC--CEE-EEec----CCCccCCceeeCCEEEEEe-CCCEEEEEECCCC
Confidence 333333568898875554 777798887 333 3322 1224453444567888887 3477888887765
|
... |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0041 Score=60.03 Aligned_cols=197 Identities=15% Similarity=0.160 Sum_probs=105.2
Q ss_pred eeeEEcCCCC---EEEEEec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 52 ETAKWDDVGR---RFLVSFL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 52 egia~d~~g~---~~~~~~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
..++|+|+|+ ++|++.. ...|+..+..+++. . ++...++ .....+++|++..|..+ .+..+.
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-----~--~lt~~~g----~~~~p~wSPDG~~Laf~-s~~~g~- 254 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-----K--KILALQG----NQLMPTFSPRKKLLAFI-SDRYGN- 254 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-----e--EeecCCC----CccceEECCCCCEEEEE-ECCCCC-
Confidence 4679999997 3456633 35799998654441 1 2322333 23456788844455543 333222
Q ss_pred cceEEE--EECCCC---eEEEEeecCCCccCCCCCCceeECCCCc-EE-EEeC-CCCeEEEEccC--CcEEEEecCCccc
Q 039428 127 YSALAA--YDLSTW---KRLFLTQLSGKSEEKSTADDIAVDAEGN-AY-VTDV-VSSKIWKVGVE--GQLLSIIRSPLFT 196 (335)
Q Consensus 127 ~~~v~~--~d~~~~---~~~~~~~~~~~~~~~~~p~~~~vd~~G~-ly-V~d~-~~~~I~~~d~~--g~~~~~~~~~~~~ 196 (335)
..++. +|.+++ +....... . .......+++|||+ ++ +++. ....||+++.+ ++..+.+.. .
T Consensus 255 -~di~~~~~~~~~g~~g~~~~lt~~----~-~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~---~ 325 (428)
T PRK01029 255 -PDLFIQSFSLETGAIGKPRRLLNE----A-FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK---K 325 (428)
T ss_pred -cceeEEEeecccCCCCcceEeecC----C-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc---C
Confidence 12444 565542 22221111 0 12234578999996 44 4443 23578988764 232222211 0
Q ss_pred cccccccccccCeEEEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEE-e-c
Q 039428 197 AKEWYKNVFGLNGIVYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVA-G-N 270 (335)
Q Consensus 197 ~~~~~~~~~~p~Gia~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va-~-~ 270 (335)
.......+++||| .|+++... ..+|+++|+.++ ..+.+.... .......+.+||+ |+++ . .
T Consensus 326 -------~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g--~~~~Lt~~~----~~~~~p~wSpDG~~L~f~~~~~ 392 (428)
T PRK01029 326 -------YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG--RDYQLTTSP----ENKESPSWAIDSLHLVYSAGNS 392 (428)
T ss_pred -------CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC--CeEEccCCC----CCccceEECCCCCEEEEEECCC
Confidence 1123567899999 67655443 358999999887 444443211 1245678888885 4444 2 2
Q ss_pred CCCeEEEEEcCCC
Q 039428 271 PYPSARLVESSDG 283 (335)
Q Consensus 271 ~~~~~~v~~~~~~ 283 (335)
+...+.+++.+.+
T Consensus 393 g~~~L~~vdl~~g 405 (428)
T PRK01029 393 NESELYLISLITK 405 (428)
T ss_pred CCceEEEEECCCC
Confidence 2245666665443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0036 Score=59.68 Aligned_cols=187 Identities=16% Similarity=0.112 Sum_probs=97.4
Q ss_pred EEEEEecCCeEEEEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeE
Q 039428 62 RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKR 140 (335)
Q Consensus 62 ~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~ 140 (335)
.+|+...++.|+.+|..+|+. .|.. .++. ......+. ++.+|+...+ +.|+.+|+++|++
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~--------~W~~~~~~~---~~ssP~v~--~~~v~v~~~~------g~l~ald~~tG~~ 182 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEV--------AWQTKVAGE---ALSRPVVS--DGLVLVHTSN------GMLQALNESDGAV 182 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCC--------cccccCCCc---eecCCEEE--CCEEEEECCC------CEEEEEEccCCCE
Confidence 444554567899998766651 1321 1111 11122343 5889984322 3599999999999
Q ss_pred EEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCcccccccccc---ccc-cCeEEEccC
Q 039428 141 LFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKN---VFG-LNGIVYHPD 215 (335)
Q Consensus 141 ~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~---~~~-p~Gia~~~d 215 (335)
++..+...+..........+++ +|.+|+. ...+.++.+|++ |+..... + +..+..... ... ....++. +
T Consensus 183 ~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~-~~~g~v~a~d~~~G~~~W~~--~-~~~~~~~~~~~~~~~~~~sP~v~-~ 256 (394)
T PRK11138 183 KWTVNLDVPSLTLRGESAPATA-FGGAIVG-GDNGRVSAVLMEQGQLIWQQ--R-ISQPTGATEIDRLVDVDTTPVVV-G 256 (394)
T ss_pred eeeecCCCCcccccCCCCCEEE-CCEEEEE-cCCCEEEEEEccCChhhhee--c-cccCCCccchhcccccCCCcEEE-C
Confidence 8776553221000001112232 3567776 456788888876 4432211 0 110000000 000 0111233 6
Q ss_pred CeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 216 GFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 216 g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
+.+|++.. ++.++.+|+..++ . .+... +..+..++++ ++++|+.+.. +.+..++..++
T Consensus 257 ~~vy~~~~-~g~l~ald~~tG~-~--~W~~~----~~~~~~~~~~-~~~vy~~~~~-g~l~ald~~tG 314 (394)
T PRK11138 257 GVVYALAY-NGNLVALDLRSGQ-I--VWKRE----YGSVNDFAVD-GGRIYLVDQN-DRVYALDTRGG 314 (394)
T ss_pred CEEEEEEc-CCeEEEEECCCCC-E--EEeec----CCCccCcEEE-CCEEEEEcCC-CeEEEEECCCC
Confidence 78998774 6789999998873 2 23211 1223345554 5788988642 56777777655
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0028 Score=61.22 Aligned_cols=188 Identities=13% Similarity=0.097 Sum_probs=103.7
Q ss_pred CCEEEEEec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCC
Q 039428 60 GRRFLVSFL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLST 137 (335)
Q Consensus 60 g~~~~~~~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~ 137 (335)
+++.|++.. ..+|+.+|. ++..+ . ++.... ......+++|++..|+.+ .+..+. ..|+.+|.++
T Consensus 164 ~~iayv~~~~~~~~L~~~D~-dG~~~----~--~l~~~~----~~v~~p~wSPDG~~la~~-s~~~~~--~~I~~~dl~~ 229 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDA-DGQNA----Q--SALSSP----EPIISPAWSPDGTKLAYV-SFESKK--PVVYVHDLAT 229 (427)
T ss_pred cEEEEEEccCCccEEEEECC-CCCCc----e--EeccCC----CCcccceEcCCCCEEEEE-EccCCC--cEEEEEECCC
Confidence 566677622 246888874 45411 1 122111 133567888855555553 322222 4699999998
Q ss_pred CeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeC--CCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEcc
Q 039428 138 WKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV--VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHP 214 (335)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~--~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~ 214 (335)
++........ ......++.|||+ ++++-. ....||.+|.+++..+.+... .......+++|
T Consensus 230 g~~~~l~~~~------g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~----------~~~~~~~~wSp 293 (427)
T PRK02889 230 GRRRVVANFK------GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQS----------SGIDTEPFFSP 293 (427)
T ss_pred CCEEEeecCC------CCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCC----------CCCCcCeEEcC
Confidence 8665333221 1223688999985 655432 345799999876654422110 01134568999
Q ss_pred CC-eEEEE-EC-CCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcE-EEEec--CCCeEEEEEcCCC
Q 039428 215 DG-FLIVI-HM-CSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKL-VVAGN--PYPSARLVESSDG 283 (335)
Q Consensus 215 dg-~Lyva-d~-~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l-~va~~--~~~~~~v~~~~~~ 283 (335)
|| +|+++ +. +..+||+++.+++ ..+.+...+.. ....++.++|+. +.+.. +...+.+++...+
T Consensus 294 DG~~l~f~s~~~g~~~Iy~~~~~~g--~~~~lt~~g~~----~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 294 DGRSIYFTSDRGGAPQIYRMPASGG--AAQRVTFTGSY----NTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CCCEEEEEecCCCCcEEEEEECCCC--ceEEEecCCCC----cCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 99 66654 32 3458999998776 34444333311 234678888863 33322 1124666766544
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=1e-05 Score=46.24 Aligned_cols=27 Identities=15% Similarity=0.120 Sum_probs=24.7
Q ss_pred cccCeEEEccCCeEEEEECCCCEEEEE
Q 039428 205 FGLNGIVYHPDGFLIVIHMCSGNLFKI 231 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyvad~~~~~v~~~ 231 (335)
..|.||+++++|++||+|+.+++|.+|
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 359999999999999999999999886
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0044 Score=57.77 Aligned_cols=226 Identities=14% Similarity=0.176 Sum_probs=135.7
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
--..+.++++.....+...+..|++|..+....| ......+ ...+++..++ +|..++. ++.. ..
T Consensus 263 ki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~-------~~~~~h~---~~V~~ls~h~-tgeYlls-As~d----~~ 326 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITASADEIIRVWSVPLSSEP-------TSSRPHE---EPVTGLSLHP-TGEYLLS-ASND----GT 326 (506)
T ss_pred EEEEEEeccchhheeecCCcceEEeeccccccCc-------ccccccc---ccceeeeecc-CCcEEEE-ecCC----ce
Confidence 3456666777665555566667777765433211 1111111 2457899997 6665554 2221 23
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
..-.|.+++.......-.. . .-....++|.|||.+|.+.+..+.|-.+|....... ..|.. ...-...
T Consensus 327 w~Fsd~~~g~~lt~vs~~~--s-~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~----a~Fpg-----ht~~vk~ 394 (506)
T KOG0289|consen 327 WAFSDISSGSQLTVVSDET--S-DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV----AKFPG-----HTGPVKA 394 (506)
T ss_pred EEEEEccCCcEEEEEeecc--c-cceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc----ccCCC-----CCCceeE
Confidence 5556777776553322210 1 123456899999999999999999999998754321 12321 1112678
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC---CCcEE
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS---DGWET 286 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~---~~~~~ 286 (335)
|+|+..|+-.++.+..+.|.-+|++..+ ....+.+.. ......+.+|..|.+.+... +.++|.... ..|..
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~-n~kt~~l~~---~~~v~s~~fD~SGt~L~~~g--~~l~Vy~~~k~~k~W~~ 468 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLK-NFKTIQLDE---KKEVNSLSFDQSGTYLGIAG--SDLQVYICKKKTKSWTE 468 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhc-ccceeeccc---cccceeEEEcCCCCeEEeec--ceeEEEEEeccccccee
Confidence 9999888777777788889999998764 555565533 12356799999998776654 557665543 23764
Q ss_pred EEEeeeecCCCCCcceEEEEeCCeEEE
Q 039428 287 ASVVAKFNGPTHRVATAATVKDGRVYL 313 (335)
Q Consensus 287 ~~~~~~~~~p~~~~Pt~va~~~g~lyV 313 (335)
.+....-.+ .-+++.|.+..-|+
T Consensus 469 ~~~~~~~sg----~st~v~Fg~~aq~l 491 (506)
T KOG0289|consen 469 IKELADHSG----LSTGVRFGEHAQYL 491 (506)
T ss_pred eehhhhccc----ccceeeecccceEE
Confidence 433322211 23578887666666
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0061 Score=58.12 Aligned_cols=216 Identities=17% Similarity=0.211 Sum_probs=129.8
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.+-.++.+.|+|.+|.....+++|+.+|-.+++. +.+ +.......+...+|...|+..++.-+++|.
T Consensus 191 kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~----vg~---l~~~~aHkGsIfalsWsPDs~~~~T~SaDk------ 257 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK----VGE---LEDSDAHKGSIFALSWSPDSTQFLTVSADK------ 257 (603)
T ss_pred cceeeEEECCCCCeEEEecCCccEEEEcCCCccE----EEE---ecCCCCccccEEEEEECCCCceEEEecCCc------
Confidence 4789999999999887778899999998555552 332 222111124678899998777777766664
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEE-----EEeCCCCeEEEEccCC-cEEEEecCCccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAY-----VTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~ly-----V~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~ 202 (335)
.+.+||..+++++....... ...|..+ |.+| ++=+..|.|--++++. ....++ .+
T Consensus 258 t~KIWdVs~~slv~t~~~~~------~v~dqqv---G~lWqkd~lItVSl~G~in~ln~~d~~~~~~i----------~G 318 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGS------TVEDQQV---GCLWQKDHLITVSLSGTINYLNPSDPSVLKVI----------SG 318 (603)
T ss_pred eEEEEEeeccceEEEeecCC------chhceEE---EEEEeCCeEEEEEcCcEEEEecccCCChhhee----------cc
Confidence 48889999887774444311 1112221 3333 3334455555555542 221111 11
Q ss_pred cccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 203 NVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 203 ~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.......+++++|+ +|| +-+-.|.|...+...+. --.+. |+..-....+|+....+.++..++. +.++++...
T Consensus 319 HnK~ITaLtv~~d~~~i~-SgsyDG~I~~W~~~~g~--~~~~~--g~~h~nqI~~~~~~~~~~~~t~g~D-d~l~~~~~~ 392 (603)
T KOG0318|consen 319 HNKSITALTVSPDGKTIY-SGSYDGHINSWDSGSGT--SDRLA--GKGHTNQIKGMAASESGELFTIGWD-DTLRVISLK 392 (603)
T ss_pred cccceeEEEEcCCCCEEE-eeccCceEEEEecCCcc--ccccc--cccccceEEEEeecCCCcEEEEecC-CeEEEEecc
Confidence 23357899999999 555 55567889999888762 22221 1111234678998887898888773 678888765
Q ss_pred CC-cEEEEEeeeecCCCCCcceEEEEe
Q 039428 282 DG-WETASVVAKFNGPTHRVATAATVK 307 (335)
Q Consensus 282 ~~-~~~~~~~~~~~~p~~~~Pt~va~~ 307 (335)
++ +...+.. +-..+|-++++.
T Consensus 393 ~~~~t~~~~~-----~lg~QP~~lav~ 414 (603)
T KOG0318|consen 393 DNGYTKSEVV-----KLGSQPKGLAVL 414 (603)
T ss_pred cCccccccee-----ecCCCceeEEEc
Confidence 43 2222211 123446677764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00055 Score=61.98 Aligned_cols=152 Identities=18% Similarity=0.131 Sum_probs=98.2
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEe----CCCCe
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTD----VVSSK 176 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d----~~~~~ 176 (335)
+.++++++|.+..+.+. +-..+ ...++||..+++....... + ++-.+--..++++||+ +|.|+ ...|.
T Consensus 6 RgH~~a~~p~~~~avaf-aRRPG---~~~~v~D~~~g~~~~~~~a--~-~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAF-ARRPG---TFALVFDCRTGQLLQRLWA--P-PGRHFYGHGVFSPDGRLLYTTENDYETGRGV 78 (305)
T ss_pred cccceeeCCCCCeEEEE-EeCCC---cEEEEEEcCCCceeeEEcC--C-CCCEEecCEEEcCCCCEEEEeccccCCCcEE
Confidence 67899999844544443 44333 3588999999987744332 1 2133334588999996 77764 35789
Q ss_pred EEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECC-----------------CCEEEEEeCCCCce
Q 039428 177 IWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMC-----------------SGNLFKIDIRKEEE 238 (335)
Q Consensus 177 I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~-----------------~~~v~~~d~~~~~~ 238 (335)
|-++|......++ ..|.. .+.+|+-|.+.||| +|.|++.+ .-.|..+|..+++
T Consensus 79 IgVyd~~~~~~ri---~E~~s-----~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~- 149 (305)
T PF07433_consen 79 IGVYDAARGYRRI---GEFPS-----HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA- 149 (305)
T ss_pred EEEEECcCCcEEE---eEecC-----CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc-
Confidence 9999988544442 23332 46789999999999 99999854 1235556555543
Q ss_pred eEEEEeccCCcCCCCCCeEEEcCCCcEEEEe
Q 039428 239 EVKLIELRGGSSLSLGDGLALLSPTKLVVAG 269 (335)
Q Consensus 239 ~~~~~~~~g~~~~~~pdGia~d~~g~l~va~ 269 (335)
.++.+.++.+.....-.-++++++|.++++.
T Consensus 150 ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 150 LLEQVELPPDLHQLSIRHLAVDGDGTVAFAM 180 (305)
T ss_pred eeeeeecCccccccceeeEEecCCCcEEEEE
Confidence 3444444221111235789999999999993
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0031 Score=60.97 Aligned_cols=156 Identities=13% Similarity=0.154 Sum_probs=90.5
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeC--CCCeEEE
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV--VSSKIWK 179 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~--~~~~I~~ 179 (335)
....+++|++..|+.+. ...+. ..|+++|.++++........ ......+++|||+ ++++.+ .+..||+
T Consensus 206 v~~p~wSpDg~~la~~s-~~~~~--~~l~~~dl~~g~~~~l~~~~------g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~ 276 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVS-FERGR--SAIYVQDLATGQRELVASFR------GINGAPSFSPDGRRLALTLSRDGNPEIYV 276 (433)
T ss_pred cccccCCCCCCEEEEEe-cCCCC--cEEEEEECCCCCEEEeccCC------CCccCceECCCCCEEEEEEeCCCCceEEE
Confidence 35667787555555542 22222 46999999888665333221 1223578999996 655533 3457999
Q ss_pred EccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCe
Q 039428 180 VGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDG 256 (335)
Q Consensus 180 ~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdG 256 (335)
+|.+++..+.+... .......+++||| +|+++... ..+||+++.+++ ..+.+...+ . ....
T Consensus 277 ~d~~~g~~~~lt~~----------~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g--~~~~lt~~g-~---~~~~ 340 (433)
T PRK04922 277 MDLGSRQLTRLTNH----------FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG--SAERLTFQG-N---YNAR 340 (433)
T ss_pred EECCCCCeEECccC----------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCC--CeEEeecCC-C---CccC
Confidence 99886654422110 0113457999999 66655433 347999998876 444444333 1 2335
Q ss_pred EEEcCCCc-EEEEecC--CCeEEEEEcCCC
Q 039428 257 LALLSPTK-LVVAGNP--YPSARLVESSDG 283 (335)
Q Consensus 257 ia~d~~g~-l~va~~~--~~~~~v~~~~~~ 283 (335)
.++.++|+ ++++... ...+.+++...+
T Consensus 341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred EEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence 78889985 4444321 124667766443
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0037 Score=56.52 Aligned_cols=191 Identities=19% Similarity=0.217 Sum_probs=111.4
Q ss_pred CCcceEEEeCCCCeEEEEEecCCCCccceEEEE---E-C-CCCeEE-----EEeecCCCccCCCCCCceeECCCCcEEEE
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAY---D-L-STWKRL-----FLTQLSGKSEEKSTADDIAVDAEGNAYVT 170 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~---d-~-~~~~~~-----~~~~~~~~~~~~~~p~~~~vd~~G~lyV~ 170 (335)
.+|.|+++. .++||+++. .+|++| + . +.++.. ...+-...-.+.--..|+++ .++.+|+.
T Consensus 49 ~r~MGl~~~--~~~l~~~t~-------~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiHdia~-~~~~l~fV 118 (335)
T TIGR03032 49 PRPMGLAVS--PQSLTLGTR-------YQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAHDLAL-GAGRLLFV 118 (335)
T ss_pred Cccceeeee--CCeEEEEEc-------ceeEEcccccccccccccCCCCCeEEeeeeeeeccCcchhheee-cCCcEEEE
Confidence 378899997 588999543 358887 2 1 111110 00000000011344578999 66788888
Q ss_pred eCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCC---CEEEEEeCCCCceeEEEEe--
Q 039428 171 DVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCS---GNLFKIDIRKEEEEVKLIE-- 244 (335)
Q Consensus 171 d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~---~~v~~~d~~~~~~~~~~~~-- 244 (335)
++.-.++-.+++.-++...|+-+ |-..-.++..-..||+|+. || --||+-... ..-||=....++ .+..+.
T Consensus 119 NT~fSCLatl~~~~SF~P~WkPp-FIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~sD~~~gWR~~~~~gG-~vidv~s~ 195 (335)
T TIGR03032 119 NTLFSCLATVSPDYSFVPLWKPP-FISKLAPEDRCHLNGMALD-DGEPRYVTALSQSDVADGWREGRRDGG-CVIDIPSG 195 (335)
T ss_pred ECcceeEEEECCCCccccccCCc-cccccCccCceeecceeee-CCeEEEEEEeeccCCcccccccccCCe-EEEEeCCC
Confidence 99989999999998887666533 3321122345679999998 66 678765332 122332222221 222221
Q ss_pred ---ccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEeCCeEEEE
Q 039428 245 ---LRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVKDGRVYLS 314 (335)
Q Consensus 245 ---~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~ 314 (335)
..| +.+|.+-.+- +|+||+++.+.+.+..++.+.| ..+.+..+ |. +|.++++.++-++|+
T Consensus 196 evl~~G---LsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G--~~e~Va~v--pG--~~rGL~f~G~llvVg 258 (335)
T TIGR03032 196 EVVASG---LSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAG--KFQPVAFL--PG--FTRGLAFAGDFAFVG 258 (335)
T ss_pred CEEEcC---ccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCC--cEEEEEEC--CC--CCcccceeCCEEEEE
Confidence 122 5667777776 5899999997777776765444 22333433 32 467888886666674
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0032 Score=59.94 Aligned_cols=192 Identities=19% Similarity=0.193 Sum_probs=121.0
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
--..+++.+++..+|....+|.|..|+...+. .. ++ .+....+...+|+.+. .+.++.+..|. .
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~------~~-~~--~g~~h~nqI~~~~~~~-~~~~~t~g~Dd------~ 385 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGT------SD-RL--AGKGHTNQIKGMAASE-SGELFTIGWDD------T 385 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEecCCcc------cc-cc--ccccccceEEEEeecC-CCcEEEEecCC------e
Confidence 34688999999888888889999999864343 11 12 1121224567898884 68888865553 4
Q ss_pred EEEEECCCCeEE--EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 130 LAAYDLSTWKRL--FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 130 v~~~d~~~~~~~--~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
|.+++...+... ....+ ...|-++++.++|.+.+.-... .|..+.-.++.... +....+
T Consensus 386 l~~~~~~~~~~t~~~~~~l------g~QP~~lav~~d~~~avv~~~~-~iv~l~~~~~~~~~------------~~~y~~ 446 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKL------GSQPKGLAVLSDGGTAVVACIS-DIVLLQDQTKVSSI------------PIGYES 446 (603)
T ss_pred EEEEecccCcccccceeec------CCCceeEEEcCCCCEEEEEecC-cEEEEecCCcceee------------cccccc
Confidence 888887654332 11233 4567899999997533332333 34555433333221 123558
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCc--eeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEE--EEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~--~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.++|++|++.....-...++|+.+.+.+.. ++....+.. +.+.-+++.||+.++++...+..+.+++..
T Consensus 447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~-----a~iT~vaySpd~~yla~~Da~rkvv~yd~~ 517 (603)
T KOG0318|consen 447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR-----AAITDVAYSPDGAYLAAGDASRKVVLYDVA 517 (603)
T ss_pred ceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc-----CCceEEEECCCCcEEEEeccCCcEEEEEcc
Confidence 899999999666566677889999988862 122223322 347899999999988885544555555543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0005 Score=65.12 Aligned_cols=224 Identities=12% Similarity=0.087 Sum_probs=136.4
Q ss_pred CCceeEEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeE
Q 039428 37 PATHVYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRL 115 (335)
Q Consensus 37 ~~~~~~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l 115 (335)
|..+.|++......-..+++||.|.+|+.+..+..|..||-. |-- ...+.+-. .|. ..+..+.+.+.+..+.|
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~-gMd----as~~~fr~l~P~-E~h~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQ-GMD----ASMRSFRQLQPC-ETHQINSLQYSVTGDQI 229 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecc-ccc----ccchhhhccCcc-cccccceeeecCCCCeE
Confidence 445667776555556789999999999998889999999954 431 01000111 121 12345788888766677
Q ss_pred EEEEecCCCCccceEEEEECCCCeEEEEee-------cCC-CccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccC--C
Q 039428 116 LVAFTDVLGNKYSALAAYDLSTWKRLFLTQ-------LSG-KSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVE--G 184 (335)
Q Consensus 116 ~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~-------~~~-~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~--g 184 (335)
.|+++. ++...||.++.++..... ... .+. ....+.....|+. +.|++.+..+.+..++-+ -
T Consensus 230 Lvvsg~------aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGH-ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k 302 (641)
T KOG0772|consen 230 LVVSGS------AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGH-IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK 302 (641)
T ss_pred EEEecC------cceeEEccCCceeeeeeccchhhhhhhccCCc-eeeeeccccccCcccceEEecCCCcEEEEecCCch
Confidence 775432 347788988765542211 110 111 3445667777874 588888876655555543 3
Q ss_pred cEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCc-eeEEEEeccCCcCC--CCCCeEEEcC
Q 039428 185 QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEE-EEVKLIELRGGSSL--SLGDGLALLS 261 (335)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~-~~~~~~~~~g~~~~--~~pdGia~d~ 261 (335)
+...++... .. .+....+..-+|++||.++.+-+.+|.|...+..+.. .....+.-. + . ....-++|..
T Consensus 303 ~q~qVik~k-~~----~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~A--H-~~g~~Itsi~FS~ 374 (641)
T KOG0772|consen 303 SQLQVIKTK-PA----GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDA--H-LPGQDITSISFSY 374 (641)
T ss_pred hheeEEeec-cC----CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeec--c-CCCCceeEEEecc
Confidence 344444321 11 1223458889999999999999999999988875531 011222210 1 1 1356799999
Q ss_pred CCcEEEEecCCCeEEEEEcC
Q 039428 262 PTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 262 ~g~l~va~~~~~~~~v~~~~ 281 (335)
+|+...+-...+.+++.++.
T Consensus 375 dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 375 DGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred ccchhhhccCCCceeeeecc
Confidence 99988885545677777664
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0043 Score=60.43 Aligned_cols=201 Identities=17% Similarity=0.232 Sum_probs=125.5
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..+.++++|+.+.....++.+..++....+. . ......-.......+++.+ ++.+.++.++. ..|.
T Consensus 163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~---~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D-----~tir 228 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----N---LLRELSGHTRGVSDVAFSP-DGSYLLSGSDD-----KTLR 228 (456)
T ss_pred EEEEEcCCCCeEEEccCCCcEEEeecccccc-----h---hhccccccccceeeeEECC-CCcEEEEecCC-----ceEE
Confidence 3468899999855556677777776422210 0 1111100013568999997 67655543322 4699
Q ss_pred EEEC-CCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccCe
Q 039428 132 AYDL-STWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 132 ~~d~-~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
+||. +.+....... +. ....+.++|.++|+++++.+..+.|..+|..+ +..+.+.. .....++
T Consensus 229 iwd~~~~~~~~~~l~--gH---~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~----------hs~~is~ 293 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLK--GH---STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG----------HSDGISG 293 (456)
T ss_pred EeeccCCCeEEEEec--CC---CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec----------cCCceEE
Confidence 9998 4434433222 11 45678999999999999999999999999875 55443321 1224789
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCceeEEEE-eccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLI-ELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~-~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
+++++||+++++.+.++.|..+|...+ ..... .+.+.....--.-+.+.+++...++....+.++..+...+
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETG--SKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCC--ceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 999999977777788999999999987 32211 1112110011267788899876666543355666665433
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.012 Score=52.34 Aligned_cols=220 Identities=14% Similarity=0.155 Sum_probs=132.5
Q ss_pred ceeeeEEcCCCCEEEEEecCCe--EEEEECC--CCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 50 LCETAKWDDVGRRFLVSFLDGG--VGQVLVP--DEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~--I~~~d~~--~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
.--..|+.|.|+.......++. ||.+... ++..+ ++ +. .++.. .......+-+ +++|.-.++|.
T Consensus 99 WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~---v~--r~--l~gHt-gylScC~f~d-D~~ilT~SGD~--- 166 (343)
T KOG0286|consen 99 WVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR---VS--RE--LAGHT-GYLSCCRFLD-DNHILTGSGDM--- 166 (343)
T ss_pred eEEEEEECCCCCeEEecCcCceeEEEecccccccccce---ee--ee--ecCcc-ceeEEEEEcC-CCceEecCCCc---
Confidence 3446799999986655555664 5555322 12110 01 01 12222 2234555553 67777754443
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccC-CcEEEEecCCcccccccccc
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~ 203 (335)
....||.++++....... . ..-.-.+.+.| ++|.||+..-...-..+|.. +...+ .|.. .
T Consensus 167 ---TCalWDie~g~~~~~f~G--H---~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~q-----tF~g-----h 228 (343)
T KOG0286|consen 167 ---TCALWDIETGQQTQVFHG--H---TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQ-----TFEG-----H 228 (343)
T ss_pred ---eEEEEEcccceEEEEecC--C---cccEEEEecCCCCCCeEEecccccceeeeeccCcceeE-----eecc-----c
Confidence 588899999987633221 1 12234577778 89999998766666666654 33333 2322 1
Q ss_pred ccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 204 VFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 204 ~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
..-.|.++|.|+|.-|++-+.++...-||+..++ ++..+.... . ..+...+++...|+|..++.......|.+.-.
T Consensus 229 esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~-~~a~ys~~~-~-~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk- 304 (343)
T KOG0286|consen 229 ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ-ELAVYSHDS-I-ICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK- 304 (343)
T ss_pred ccccceEEEccCCCeeeecCCCceeEEEeecCCc-EEeeeccCc-c-cCCceeEEEcccccEEEeeecCCceeEeeccc-
Confidence 2348999999999999999999999999999875 566665332 2 34468999999999999966444455555322
Q ss_pred cEEEEEeeeecCCCCCcceEEEEe
Q 039428 284 WETASVVAKFNGPTHRVATAATVK 307 (335)
Q Consensus 284 ~~~~~~~~~~~~p~~~~Pt~va~~ 307 (335)
.+..+.+.+...+ .+.+.+.
T Consensus 305 ---~e~vg~L~GHeNR-vScl~~s 324 (343)
T KOG0286|consen 305 ---GERVGVLAGHENR-VSCLGVS 324 (343)
T ss_pred ---cceEEEeeccCCe-eEEEEEC
Confidence 2334444333322 3455553
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00056 Score=63.25 Aligned_cols=195 Identities=15% Similarity=0.139 Sum_probs=123.1
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCC-C-eEEEEEecCCCCccce
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPR-N-RLLVAFTDVLGNKYSA 129 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~-g-~l~v~~~D~~~~~~~~ 129 (335)
.+..++.++.+++++.++|.+-+|..++... +. ++. +.. ....++.++|.. + .+--+..|. .
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~----~~--~l~---gH~-~~v~~~~fhP~~~~~~lat~s~Dg------t 242 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNL----LQ--TLR---GHT-SRVGAAVFHPVDSDLNLATASADG------T 242 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCcce----eE--EEe---ccc-cceeeEEEccCCCccceeeeccCC------c
Confidence 4667889999998889999999998665541 11 232 211 245688898852 3 333333332 3
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
+..|+.++...+ .++.+. ......+++.|+|.+..|.+....-..+|...+....... +.-.+..+
T Consensus 243 vklw~~~~e~~l--~~l~gH---~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE---------GHs~~v~~ 308 (459)
T KOG0272|consen 243 VKLWKLSQETPL--QDLEGH---LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE---------GHSKGVFS 308 (459)
T ss_pred eeeeccCCCcch--hhhhcc---hhhheeeeecCCCceeeecccccchhhcccccchhhHhhc---------ccccccce
Confidence 556666554333 223221 4567789999999999998887666666666544321111 12235789
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
|+|.+||.|..+-..+..=.+.|+.++. ....+. | + ..-..+++++|+|....++...|..+|.++.
T Consensus 309 iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~L~--g-H-~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMFLA--G-H-IKEILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred eEecCCCceeeccCccchhheeecccCc-EEEEec--c-c-ccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence 9999999998776544322333666653 333333 3 3 3446899999999888887767877777654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0064 Score=55.90 Aligned_cols=214 Identities=15% Similarity=0.154 Sum_probs=120.2
Q ss_pred eeEEEcCC-----CcceeeeEEcCCCCEEEEE--ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCC
Q 039428 40 HVYQYHSP-----SFLCETAKWDDVGRRFLVS--FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPR 112 (335)
Q Consensus 40 ~~~~~~~~-----~~~pegia~d~~g~~~~~~--~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~ 112 (335)
.+|.++.. ..++...+++.+|+.+|+. ....+|.++|...++ ++. .+..|+ +.+|.-.. +
T Consensus 81 ~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k----vv~---ei~~PG-----C~~iyP~~-~ 147 (342)
T PF06433_consen 81 GEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK----VVG---EIDTPG-----CWLIYPSG-N 147 (342)
T ss_dssp EEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE----EEE---EEEGTS-----EEEEEEEE-T
T ss_pred ceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCc----eee---eecCCC-----EEEEEecC-C
Confidence 34555543 2356788999999988888 455789999975443 344 234454 34554443 4
Q ss_pred CeEEEEEecCCCCccceEEEEECC-CCeEE-EEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCcEEEE
Q 039428 113 NRLLVAFTDVLGNKYSALAAYDLS-TWKRL-FLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQLLSI 189 (335)
Q Consensus 113 g~l~v~~~D~~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~~~~~ 189 (335)
.+++..++|. .+..+.++ .|+.. .....-.+.. -...+.-+.++ .+++|+. +.+|.|+.+|..|...+.
T Consensus 148 ~~F~~lC~DG------sl~~v~Ld~~Gk~~~~~t~~F~~~~-dp~f~~~~~~~~~~~~~F~-Sy~G~v~~~dlsg~~~~~ 219 (342)
T PF06433_consen 148 RGFSMLCGDG------SLLTVTLDADGKEAQKSTKVFDPDD-DPLFEHPAYSRDGGRLYFV-SYEGNVYSADLSGDSAKF 219 (342)
T ss_dssp TEEEEEETTS------CEEEEEETSTSSEEEEEEEESSTTT-S-B-S--EEETTTTEEEEE-BTTSEEEEEEETTSSEEE
T ss_pred CceEEEecCC------ceEEEEECCCCCEeEeeccccCCCC-cccccccceECCCCeEEEE-ecCCEEEEEeccCCcccc
Confidence 5666655664 35555544 33333 2212111111 11223333334 4567664 788999999988765443
Q ss_pred ecCCc--ccc----ccccccccccCeEEEccC-CeEEEEECC---------CCEEEEEeCCCCceeEEEEeccCCcCCCC
Q 039428 190 IRSPL--FTA----KEWYKNVFGLNGIVYHPD-GFLIVIHMC---------SGNLFKIDIRKEEEEVKLIELRGGSSLSL 253 (335)
Q Consensus 190 ~~~~~--~~~----~~~~~~~~~p~Gia~~~d-g~Lyvad~~---------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~ 253 (335)
.. +| +.. .++.| .+-+-+|+++. ++|||--.. +..||++|+...+ .+..+++.. .
T Consensus 220 ~~-~~~~~t~~e~~~~WrP--GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k-rv~Ri~l~~-~---- 290 (342)
T PF06433_consen 220 GK-PWSLLTDAEKADGWRP--GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK-RVARIPLEH-P---- 290 (342)
T ss_dssp EE-EEESS-HHHHHTTEEE---SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE-EEEEEEEEE-E----
T ss_pred cC-cccccCccccccCcCC--cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe-EEEEEeCCC-c----
Confidence 22 11 111 11222 23556888874 599985321 2479999999986 777777643 1
Q ss_pred CCeEEEcCCC--cEEEEecCCCeEEEEEcCCC
Q 039428 254 GDGLALLSPT--KLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 254 pdGia~d~~g--~l~va~~~~~~~~v~~~~~~ 283 (335)
.+.|++..+. .||..+.+...+.|++...|
T Consensus 291 ~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 291 IDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp ESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred cceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 4688887765 47666654467888887665
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0082 Score=57.42 Aligned_cols=188 Identities=15% Similarity=0.144 Sum_probs=102.8
Q ss_pred CCEEEEEec----CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEEC
Q 039428 60 GRRFLVSFL----DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDL 135 (335)
Q Consensus 60 g~~~~~~~~----~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~ 135 (335)
++++|+... ...|+..|. ++..+ . .+. .+. ......++++++..|+.+.. ..+. ..|+++|.
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~d~-~g~~~----~--~l~-~~~---~~~~~p~~Spdg~~la~~~~-~~~~--~~i~v~d~ 221 (417)
T TIGR02800 156 TRIAYVSKSGKSRRYELQVADY-DGANP----Q--TIT-RSR---EPILSPAWSPDGQKLAYVSF-ESGK--PEIYVQDL 221 (417)
T ss_pred CEEEEEEEeCCCCcceEEEEcC-CCCCC----E--Eee-cCC---CceecccCCCCCCEEEEEEc-CCCC--cEEEEEEC
Confidence 346666622 246888874 44421 1 132 222 12345567774445554322 2111 46999999
Q ss_pred CCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCC--CCeEEEEccCCcEEEEecCCccccccccccccccCeEEE
Q 039428 136 STWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVV--SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVY 212 (335)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~--~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~ 212 (335)
++++....... ......+++.|||+ ++++... ...||.++.+++..+.+.. .. ......++
T Consensus 222 ~~g~~~~~~~~------~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~--------~~~~~~~~ 285 (417)
T TIGR02800 222 ATGQREKVASF------PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN--GP--------GIDTEPSW 285 (417)
T ss_pred CCCCEEEeecC------CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCC--CC--------CCCCCEEE
Confidence 88865432222 12233578999985 7665443 4579999987654442211 00 01235688
Q ss_pred ccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCC--CeEEEEEcCCC
Q 039428 213 HPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPY--PSARLVESSDG 283 (335)
Q Consensus 213 ~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~--~~~~v~~~~~~ 283 (335)
++|| +|+++... ..+|++++++++ ..+.+...+ .....+++.++|+ ++++.... ..+.+++...+
T Consensus 286 s~dg~~l~~~s~~~g~~~iy~~d~~~~--~~~~l~~~~----~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 286 SPDGKSIAFTSDRGGSPQIYMMDADGG--EVRRLTFRG----GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCC--CEEEeecCC----CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 9998 66554432 348999999876 444443322 2245678888886 44443321 24666665544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.001 Score=60.96 Aligned_cols=151 Identities=17% Similarity=0.124 Sum_probs=89.3
Q ss_pred CCeEEEEEecCC-CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCC---------CCeEEEE
Q 039428 112 RNRLLVAFTDVL-GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVV---------SSKIWKV 180 (335)
Q Consensus 112 ~g~l~v~~~D~~-~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~---------~~~I~~~ 180 (335)
..++|| .|.. .+-.++++++|.++++++-.++. ...+ .++++|||+ +|++++. +.-|..+
T Consensus 2 ~~rvyV--~D~~~~~~~~rv~viD~d~~k~lGmi~~------g~~~-~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~ 72 (342)
T PF06433_consen 2 AHRVYV--QDPVFFHMTSRVYVIDADSGKLLGMIDT------GFLG-NVALSPDGKTIYVAETFYSRGTRGERTDVVEIW 72 (342)
T ss_dssp TTEEEE--EE-GGGGSSEEEEEEETTTTEEEEEEEE------ESSE-EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CcEEEE--ECCccccccceEEEEECCCCcEEEEeec------ccCC-ceeECCCCCEEEEEEEEEeccccccceeEEEEE
Confidence 478999 5542 12225799999999988744443 1222 388899985 9988753 3456667
Q ss_pred ccCCcEEEEecCCccccccc-c-ccccccCeEEEccCC-eEEEEECC-CCEEEEEeCCCCceeEEEEeccCCcCCCCCCe
Q 039428 181 GVEGQLLSIIRSPLFTAKEW-Y-KNVFGLNGIVYHPDG-FLIVIHMC-SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDG 256 (335)
Q Consensus 181 d~~g~~~~~~~~~~~~~~~~-~-~~~~~p~Gia~~~dg-~Lyvad~~-~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdG 256 (335)
|+.+-.... ....|.. . -....++-++++.|| ++||.+.. ...|.++|+..++ .+..++++| +.+.+|.|
T Consensus 73 D~~TL~~~~----EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k-vv~ei~~PG-C~~iyP~~ 146 (342)
T PF06433_consen 73 DTQTLSPTG----EIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK-VVGEIDTPG-CWLIYPSG 146 (342)
T ss_dssp ETTTTEEEE----EEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE-EEEEEEGTS-EEEEEEEE
T ss_pred ecCcCcccc----eEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCc-eeeeecCCC-EEEEEecC
Confidence 776533221 0111110 0 123457889999999 99998854 6789999999986 778888877 43444533
Q ss_pred EEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 257 LALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 257 ia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
++ ..+..+. ++++..+.++++
T Consensus 147 ----~~-~F~~lC~-DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 147 ----NR-GFSMLCG-DGSLLTVTLDAD 167 (342)
T ss_dssp ----TT-EEEEEET-TSCEEEEEETST
T ss_pred ----CC-ceEEEec-CCceEEEEECCC
Confidence 22 3332222 245555666644
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.015 Score=51.74 Aligned_cols=232 Identities=15% Similarity=0.132 Sum_probs=148.0
Q ss_pred EEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 43 QYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 43 ~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
.+.+...--..+-|.++.++++....+|++.+||.-++++ +. .+..|. .+..-.++.| .+++.++ +..
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK----~h---aipl~s---~WVMtCA~sP-Sg~~VAc-GGL 117 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK----VH---AIPLPS---SWVMTCAYSP-SGNFVAC-GGL 117 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc----ee---EEecCc---eeEEEEEECC-CCCeEEe-cCc
Confidence 3444444567889999999888778899999999655552 11 333332 2567788888 7777664 222
Q ss_pred CCCccceEEEEECCCC--e--EEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCcccc
Q 039428 123 LGNKYSALAAYDLSTW--K--RLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTA 197 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~--~--~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~ 197 (335)
. +.-.+|++.+. + ......+.+ . ..+.....+-+|+ -.+|.++..+...+|.+ |+....+ ..
T Consensus 118 -d---N~Csiy~ls~~d~~g~~~v~r~l~g--H-tgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f-----~G 184 (343)
T KOG0286|consen 118 -D---NKCSIYPLSTRDAEGNVRVSRELAG--H-TGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVF-----HG 184 (343)
T ss_pred -C---ceeEEEecccccccccceeeeeecC--c-cceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEe-----cC
Confidence 2 34667776644 1 112222322 1 4667777777665 45677888888888876 4454433 21
Q ss_pred ccccccccccCeEEEcc-CCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEE
Q 039428 198 KEWYKNVFGLNGIVYHP-DGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSAR 276 (335)
Q Consensus 198 ~~~~~~~~~p~Gia~~~-dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~ 276 (335)
...-.-+|.+.| +++.||+-.-...-+..|...+. -++.|.... .-...+.+-|+|.-++++......|
T Consensus 185 -----H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghe----sDINsv~ffP~G~afatGSDD~tcR 254 (343)
T KOG0286|consen 185 -----HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHE----SDINSVRFFPSGDAFATGSDDATCR 254 (343)
T ss_pred -----CcccEEEEecCCCCCCeEEecccccceeeeeccCcc-eeEeecccc----cccceEEEccCCCeeeecCCCceeE
Confidence 112367889999 77999998888877777888764 677776332 2367899999999999977556677
Q ss_pred EEEcCCCcEEEEEeeeecCC-CCCcceEEEEe-CCeEEE
Q 039428 277 LVESSDGWETASVVAKFNGP-THRVATAATVK-DGRVYL 313 (335)
Q Consensus 277 v~~~~~~~~~~~~~~~~~~p-~~~~Pt~va~~-~g~lyV 313 (335)
.++...+-. +..+..+ ...-.++++|. .|||..
T Consensus 255 lyDlRaD~~----~a~ys~~~~~~gitSv~FS~SGRlLf 289 (343)
T KOG0286|consen 255 LYDLRADQE----LAVYSHDSIICGITSVAFSKSGRLLF 289 (343)
T ss_pred EEeecCCcE----EeeeccCcccCCceeEEEcccccEEE
Confidence 777765422 2223212 12223678884 788665
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.002 Score=55.99 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=115.6
Q ss_pred CEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCe
Q 039428 61 RRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWK 139 (335)
Q Consensus 61 ~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~ 139 (335)
.++.++ ..+.+|..|...+|.. . ..++.++. ..+.+.+.| +++..++.+ .+ .|..||..++.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C-----~--rTiqh~ds---qVNrLeiTp-dk~~LAaa~---~q---hvRlyD~~S~n 72 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGIC-----S--RTIQHPDS---QVNRLEITP-DKKDLAAAG---NQ---HVRLYDLNSNN 72 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeE-----E--EEEecCcc---ceeeEEEcC-Ccchhhhcc---CC---eeEEEEccCCC
Confidence 456666 7889999998766652 2 24455542 567899997 555555322 12 39999998875
Q ss_pred EEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eE
Q 039428 140 RLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FL 218 (335)
Q Consensus 140 ~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~L 218 (335)
.-..+.+.++ -+....+.|-.+|+..++.+..+.+..+|...-... ..|..+ .-.|.+++.|.. .|
T Consensus 73 p~Pv~t~e~h---~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q----R~~~~~------spVn~vvlhpnQteL 139 (311)
T KOG0315|consen 73 PNPVATFEGH---TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ----RNYQHN------SPVNTVVLHPNQTEL 139 (311)
T ss_pred CCceeEEecc---CCceEEEEEeecCeEEEecCCCceEEEEeccCcccc----hhccCC------CCcceEEecCCcceE
Confidence 4322333222 245667888899998888899999988887652211 122211 127999999977 88
Q ss_pred EEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 219 IVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 219 yvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
+++| .++.|++.|+....=.-+.++ .. .....-++++++|...++.+..++-.|.+.
T Consensus 140 is~d-qsg~irvWDl~~~~c~~~liP--e~--~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 140 ISGD-QSGNIRVWDLGENSCTHELIP--ED--DTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred Eeec-CCCcEEEEEccCCccccccCC--CC--CcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 8887 577799999887520112222 11 122467888888887777442244444443
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0014 Score=57.00 Aligned_cols=191 Identities=14% Similarity=0.139 Sum_probs=120.4
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEE---EeCCCCeEEEEEecCCCCc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIA---VDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~---~d~~~g~l~v~~~D~~~~~ 126 (335)
.-..+|++.+.+.+++...+.-+.++|.+.-..| ..... +.+.||. +-..+..++-. +|.
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap--------p~E~~----ghtg~Ir~v~wc~eD~~iLSS-add---- 164 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP--------PKEIS----GHTGGIRTVLWCHEDKCILSS-ADD---- 164 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhccCCCCC--------chhhc----CCCCcceeEEEeccCceEEee-ccC----
Confidence 4568899998887776654554555553222211 11111 2233332 22224545443 333
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
..|..||..++..+....+ ...++.+.+.++|++.. -...+.|.-+|++.--+ ++ .+..| .+
T Consensus 165 -~tVRLWD~rTgt~v~sL~~------~s~VtSlEvs~dG~ilT-ia~gssV~Fwdaksf~~--lK--s~k~P------~n 226 (334)
T KOG0278|consen 165 -KTVRLWDHRTGTEVQSLEF------NSPVTSLEVSQDGRILT-IAYGSSVKFWDAKSFGL--LK--SYKMP------CN 226 (334)
T ss_pred -CceEEEEeccCcEEEEEec------CCCCcceeeccCCCEEE-EecCceeEEeccccccc--ee--eccCc------cc
Confidence 3589999999987766555 34567899999997654 46667888888874211 11 22222 34
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
.+.-.+.|+...||+-.....+++||.+++. ....+. .| . ++-..-+.+.|+|.+|.++...+.+++..
T Consensus 227 V~SASL~P~k~~fVaGged~~~~kfDy~Tge-Ei~~~n-kg-h-~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 227 VESASLHPKKEFFVAGGEDFKVYKFDYNTGE-EIGSYN-KG-H-FGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred cccccccCCCceEEecCcceEEEEEeccCCc-eeeecc-cC-C-CCceEEEEECCCCceeeccCCCceEEEEE
Confidence 6677888988999999999999999999874 444431 23 2 34357889999999999977656666544
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0069 Score=53.50 Aligned_cols=201 Identities=9% Similarity=0.098 Sum_probs=121.9
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
..---+++++++.+.++....+.+|.-|+.. +.. . .+.....+ -++..-+.+.|...+.+++++ +.+
T Consensus 105 ~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~c-----k-~t~~~~~~--~~WVscvrfsP~~~~p~Ivs~--s~D-- 171 (315)
T KOG0279|consen 105 TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVC-----K-YTIHEDSH--REWVSCVRFSPNESNPIIVSA--SWD-- 171 (315)
T ss_pred CCceEEEEecCCCceeecCCCcceeeeeeec-ccE-----E-EEEecCCC--cCcEEEEEEcCCCCCcEEEEc--cCC--
Confidence 3345689999998887777889999999854 431 1 01221211 246789999985556777543 334
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
..|.+||+++-++... + ++. ..+.|-++|.|||.+-.+....+.++.+|.+ ++....++ ....
T Consensus 172 ktvKvWnl~~~~l~~~--~--~gh-~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-----------a~~~ 235 (315)
T KOG0279|consen 172 KTVKVWNLRNCQLRTT--F--IGH-SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-----------AFDI 235 (315)
T ss_pred ceEEEEccCCcchhhc--c--ccc-cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-----------CCCe
Confidence 3699999988766522 2 122 5788999999999999998889999999976 44433222 1223
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEecc--CC-cCCCCC--CeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELR--GG-SSLSLG--DGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~--g~-~~~~~p--dGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
.+.++|+|..+.+ +-.....|..+|++.+. .+..+... |. .....| --+|..++|.-..++..+|.+++..
T Consensus 236 v~sl~fspnrywL-~~at~~sIkIwdl~~~~-~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 236 VNSLCFSPNRYWL-CAATATSIKIWDLESKA-VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EeeEEecCCceeE-eeccCCceEEEeccchh-hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 7899999876333 33334447777777752 22222211 10 001123 2345556775444433345566543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0088 Score=57.74 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=87.0
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCC--CCeEEE
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVV--SSKIWK 179 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~--~~~I~~ 179 (335)
.....++|++.+|..+..+. +. ..|+.+|.++++........+ .-..+++.|||+ ++++... .-.||.
T Consensus 206 v~~p~wSPDG~~la~~s~~~-~~--~~i~i~dl~tg~~~~l~~~~g------~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFEN-KK--SQLVVHDLRSGARKVVASFRG------HNGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred cccceEcCCCCEEEEEEecC-CC--cEEEEEeCCCCceEEEecCCC------ccCceeECCCCCEEEEEEecCCcEEEEE
Confidence 46788888555554432221 11 469999998876543333311 123589999996 5554332 336899
Q ss_pred EccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEEC--CCCEEEEEeCCCCceeEEEEeccCCcCCCCCCe
Q 039428 180 VGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHM--CSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDG 256 (335)
Q Consensus 180 ~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~--~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdG 256 (335)
+|.+++..+.+... .......+++||| .|+++.. +.-+||+++..+. ..+.+. . . . ..
T Consensus 277 ~d~~~~~~~~lt~~----------~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~--~~~~l~--~-~--~--~~ 337 (429)
T PRK01742 277 MGANGGTPSQLTSG----------AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG--GASLVG--G-R--G--YS 337 (429)
T ss_pred EECCCCCeEeeccC----------CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC--CeEEec--C-C--C--CC
Confidence 99876554422110 1124678999999 5665543 3448899888776 334432 2 1 1 23
Q ss_pred EEEcCCCcE-EEEecCCCeEEEEEcCCC
Q 039428 257 LALLSPTKL-VVAGNPYPSARLVESSDG 283 (335)
Q Consensus 257 ia~d~~g~l-~va~~~~~~~~v~~~~~~ 283 (335)
..+.++|+. +++.. +.+.+++...+
T Consensus 338 ~~~SpDG~~ia~~~~--~~i~~~Dl~~g 363 (429)
T PRK01742 338 AQISADGKTLVMING--DNVVKQDLTSG 363 (429)
T ss_pred ccCCCCCCEEEEEcC--CCEEEEECCCC
Confidence 567888864 34433 44666665544
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0056 Score=59.04 Aligned_cols=160 Identities=12% Similarity=0.099 Sum_probs=93.0
Q ss_pred eeeEEcCCCCEEEEE-ecC--CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 52 ETAKWDDVGRRFLVS-FLD--GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~~--~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
..++|+|+|+.+++. ..+ ..|+++|..++. .. .+.... .......+++++..|+.+ .+..+. .
T Consensus 246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-----~~---~lt~~~---~~~~~~~~spDg~~i~f~-s~~~g~--~ 311 (430)
T PRK00178 246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-----LS---RVTNHP---AIDTEPFWGKDGRTLYFT-SDRGGK--P 311 (430)
T ss_pred CCeEECCCCCEEEEEEccCCCceEEEEECCCCC-----eE---EcccCC---CCcCCeEECCCCCEEEEE-ECCCCC--c
Confidence 368999999877655 333 379999865443 12 122211 123456678755566664 343332 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCC--CeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVS--SKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~--~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
.|+.+|..+++..... .. ........++|+|+ ++++.... ..|+++|.++...+.+....
T Consensus 312 ~iy~~d~~~g~~~~lt-~~-----~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~----------- 374 (430)
T PRK00178 312 QIYKVNVNGGRAERVT-FV-----GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS----------- 374 (430)
T ss_pred eEEEEECCCCCEEEee-cC-----CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC-----------
Confidence 6999999887654322 11 11223467889985 66654332 36899998865554332110
Q ss_pred ccCeEEEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEe
Q 039428 206 GLNGIVYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIE 244 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~ 244 (335)
......++||| .++++... ..+|+.++.++. ..+.+.
T Consensus 375 ~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~--~~~~l~ 414 (430)
T PRK00178 375 LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR--VRLPLP 414 (430)
T ss_pred CCCCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEECc
Confidence 12245899999 66665543 346899998876 344443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0083 Score=52.59 Aligned_cols=185 Identities=14% Similarity=0.136 Sum_probs=118.1
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC--CCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG--NATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~--~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.-.+++|..+|..+..+..++++.++.....+ +...-...+ ....-+..++.+..++++.. ++
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r----------~~~~~~~~gh~~svdql~w~~~~~d~~atas---~d-- 86 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDR----------FRKELVYRGHTDSVDQLCWDPKHPDLFATAS---GD-- 86 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchh----------hhhhhcccCCCcchhhheeCCCCCcceEEec---CC--
Confidence 45799999999988777667777777642222 111111111 24556778877777776422 22
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
..|.+||...++....+.... .=.-++..|+|+..+.......|.-+|........ . .......
T Consensus 87 k~ir~wd~r~~k~~~~i~~~~------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~--~--------~~~~~e~ 150 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCTARIETKG------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN--E--------EQFKFEV 150 (313)
T ss_pred ceEEEEEeccCcEEEEeeccC------cceEEEEcCCCCEEEEecCcccEEEEEecccceee--h--------hccccee
Confidence 259999998877664444321 11237778888766666666778888765432220 1 1123458
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
|-+++..++.+|+...+.|.|..+..-.-+ .++.+.... ..---|.+||+|+.+.++.
T Consensus 151 ne~~w~~~nd~Fflt~GlG~v~ILsypsLk-pv~si~AH~----snCicI~f~p~GryfA~Gs 208 (313)
T KOG1407|consen 151 NEISWNNSNDLFFLTNGLGCVEILSYPSLK-PVQSIKAHP----SNCICIEFDPDGRYFATGS 208 (313)
T ss_pred eeeeecCCCCEEEEecCCceEEEEeccccc-cccccccCC----cceEEEEECCCCceEeecc
Confidence 999999999999999999988777665543 555565332 2245789999999888765
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0055 Score=55.49 Aligned_cols=146 Identities=16% Similarity=0.119 Sum_probs=88.8
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeec--CCcCCCCcceEEEeCCCCeEEEEEe---cCC-
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKE--DDVVGNATMGIAVDRPRNRLLVAFT---DVL- 123 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~--~~~~~~~p~Gi~~d~~~g~l~v~~~---D~~- 123 (335)
-.+.++| .+++++++...-+.+..+++ .-.+.. .-+=++++. |+.. =..+|+++.. +.--||+.- |..
T Consensus 104 diHdia~-~~~~l~fVNT~fSCLatl~~-~~SF~P--~WkPpFIs~la~eDR-CHLNGlA~~~-g~p~yVTa~~~sD~~~ 177 (335)
T TIGR03032 104 DAHDLAL-GAGRLLFVNTLFSCLATVSP-DYSFVP--LWKPPFISKLAPEDR-CHLNGMALDD-GEPRYVTALSQSDVAD 177 (335)
T ss_pred chhheee-cCCcEEEEECcceeEEEECC-CCcccc--ccCCccccccCccCc-eeecceeeeC-CeEEEEEEeeccCCcc
Confidence 3467899 67789999866678999974 333200 000012221 1110 1258999983 566777642 211
Q ss_pred ---CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCcccccc
Q 039428 124 ---GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKE 199 (335)
Q Consensus 124 ---~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~ 199 (335)
.++...-..+|..+++++. .++.+|..-.. .+|++|++|++.+.|.++|++ |+...+..-+
T Consensus 178 gWR~~~~~gG~vidv~s~evl~--------~GLsmPhSPRW-hdgrLwvldsgtGev~~vD~~~G~~e~Va~vp------ 242 (335)
T TIGR03032 178 GWREGRRDGGCVIDIPSGEVVA--------SGLSMPHSPRW-YQGKLWLLNSGRGELGYVDPQAGKFQPVAFLP------ 242 (335)
T ss_pred cccccccCCeEEEEeCCCCEEE--------cCccCCcCCcE-eCCeEEEEECCCCEEEEEcCCCCcEEEEEECC------
Confidence 1222233346777776652 12566666665 368999999999999999997 7766543222
Q ss_pred ccccccccCeEEEccCC-eEEEEEC
Q 039428 200 WYKNVFGLNGIVYHPDG-FLIVIHM 223 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg-~Lyvad~ 223 (335)
..|.||++. | .++|+-+
T Consensus 243 -----G~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 243 -----GFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred -----CCCccccee--CCEEEEEec
Confidence 248999999 6 6666644
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.013 Score=51.53 Aligned_cols=209 Identities=17% Similarity=0.173 Sum_probs=124.6
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
.-+.+..+|.++|.+..+...-+|-..+|+. +. .-.+.. +....+.+|-+...+.-.++| ..+.
T Consensus 14 TqiKyN~eGDLlFscaKD~~~~vw~s~nGer----lG-----ty~GHt-GavW~~Did~~s~~liTGSAD------~t~k 77 (327)
T KOG0643|consen 14 TQIKYNREGDLLFSCAKDSTPTVWYSLNGER----LG-----TYDGHT-GAVWCCDIDWDSKHLITGSAD------QTAK 77 (327)
T ss_pred ceEEecCCCcEEEEecCCCCceEEEecCCce----ee-----eecCCC-ceEEEEEecCCcceeeecccc------ceeE
Confidence 4678899999999987666555554334651 22 112222 245667777544555443333 2478
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEE--EeC---CCCeEEEEccCCcEEEEec-CCcccccccccccc
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYV--TDV---VSSKIWKVGVEGQLLSIIR-SPLFTAKEWYKNVF 205 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV--~d~---~~~~I~~~d~~g~~~~~~~-~~~~~~~~~~~~~~ 205 (335)
.||.++|+.+.....+. ....+.|+.+|++.+ +|. ....|..+|.......... .+.+..+. .-.
T Consensus 78 LWDv~tGk~la~~k~~~------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t---~~s 148 (327)
T KOG0643|consen 78 LWDVETGKQLATWKTNS------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT---PDS 148 (327)
T ss_pred EEEcCCCcEEEEeecCC------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC---Ccc
Confidence 89999998886665532 234688899998444 442 3566777765421111000 11111110 113
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcE
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWE 285 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~ 285 (335)
.++-..++|-+.-+++-..++.|.++|...++..+....... .....|.+.++..+|++........+++..
T Consensus 149 kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~----~~Ind~q~s~d~T~FiT~s~Dttakl~D~~---- 220 (327)
T KOG0643|consen 149 KITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHS----SKINDLQFSRDRTYFITGSKDTTAKLVDVR---- 220 (327)
T ss_pred ceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhc----cccccccccCCcceEEecccCccceeeecc----
Confidence 478888999886667777899999999998642333322222 236789999999999997655555666654
Q ss_pred EEEEeeee
Q 039428 286 TASVVAKF 293 (335)
Q Consensus 286 ~~~~~~~~ 293 (335)
..+++.++
T Consensus 221 tl~v~Kty 228 (327)
T KOG0643|consen 221 TLEVLKTY 228 (327)
T ss_pred ceeeEEEe
Confidence 23455554
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0016 Score=64.24 Aligned_cols=74 Identities=16% Similarity=0.296 Sum_probs=50.2
Q ss_pred CCCCCCceeECCC-CcEEEEeCCC-------------------CeEEEEccCCc-------EEEE--e-cCCcc-----c
Q 039428 152 EKSTADDIAVDAE-GNAYVTDVVS-------------------SKIWKVGVEGQ-------LLSI--I-RSPLF-----T 196 (335)
Q Consensus 152 ~~~~p~~~~vd~~-G~lyV~d~~~-------------------~~I~~~d~~g~-------~~~~--~-~~~~~-----~ 196 (335)
++.+|.+++++|. |.+|++.+.+ |.|+++++++. ...+ . +++.. .
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 3899999999996 8999986544 48999998765 2211 1 11100 0
Q ss_pred cccccccccccCeEEEccCCeEEEEECCC
Q 039428 197 AKEWYKNVFGLNGIVYHPDGFLIVIHMCS 225 (335)
Q Consensus 197 ~~~~~~~~~~p~Gia~~~dg~Lyvad~~~ 225 (335)
.......+.+|.+|+++++|+||++.-.+
T Consensus 428 ~~~~~~~f~sPDNL~~d~~G~LwI~eD~~ 456 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPDGNLWIQEDGG 456 (524)
T ss_pred CcccCCCcCCCCceEECCCCCEEEEeCCC
Confidence 01123456689999999999999886544
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0035 Score=54.58 Aligned_cols=151 Identities=13% Similarity=0.127 Sum_probs=100.3
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..+.|....+.++.+..++.|.-||-.++. .+. .+..+. .+..+.++. +|++... ++. +.|.
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt----~v~---sL~~~s----~VtSlEvs~-dG~ilTi-a~g-----ssV~ 208 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRTGT----EVQ---SLEFNS----PVTSLEVSQ-DGRILTI-AYG-----SSVK 208 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEeccCc----EEE---EEecCC----CCcceeecc-CCCEEEE-ecC-----ceeE
Confidence 455677777777777778999999865554 122 233332 567899986 6777654 443 4588
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIV 211 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia 211 (335)
-+|+.+-.++..... +...+.....|+-.+||+......++++|-+..... ..+.+. ...-...+.
T Consensus 209 Fwdaksf~~lKs~k~------P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi----~~~nkg----h~gpVhcVr 274 (334)
T KOG0278|consen 209 FWDAKSFGLLKSYKM------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEI----GSYNKG----HFGPVHCVR 274 (334)
T ss_pred EeccccccceeeccC------ccccccccccCCCceEEecCcceEEEEEeccCCcee----eecccC----CCCceEEEE
Confidence 899988666544333 223345667788889999988999999998754433 122110 111268999
Q ss_pred EccCCeEEEEECCCCEEEEEeCC
Q 039428 212 YHPDGFLIVIHMCSGNLFKIDIR 234 (335)
Q Consensus 212 ~~~dg~Lyvad~~~~~v~~~d~~ 234 (335)
|+|||.+|.+-+.+|.|......
T Consensus 275 FSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 275 FSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred ECCCCceeeccCCCceEEEEEec
Confidence 99999999999888866544443
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00084 Score=63.07 Aligned_cols=204 Identities=14% Similarity=0.086 Sum_probs=129.0
Q ss_pred EEEcCCCcceeeeEEcC-CCCEEEEEecCCeEEEEECCC-CCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEE
Q 039428 42 YQYHSPSFLCETAKWDD-VGRRFLVSFLDGGVGQVLVPD-EYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAF 119 (335)
Q Consensus 42 ~~~~~~~~~pegia~d~-~g~~~~~~~~~~~I~~~d~~~-g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~ 119 (335)
+.+.+-...-..+-|-| .++++..+..++.|+.|+.-+ ++ .+. ++ .+.. .....+.++...-++.-+.
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~----~lr--tf---~gH~-k~Vrd~~~s~~g~~fLS~s 277 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR----CLR--TF---KGHR-KPVRDASFNNCGTSFLSAS 277 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcc----eeh--hh---hcch-hhhhhhhccccCCeeeeee
Confidence 33433333345566777 566655557788988887533 22 111 12 1111 2346777875333444433
Q ss_pred ecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCcEEEEecCCccccc
Q 039428 120 TDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAK 198 (335)
Q Consensus 120 ~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~ 198 (335)
-| ..|..||.++|+....... ...|..+.+.|++ ++|++....++|..+|.....+. ..+..
T Consensus 278 fD------~~lKlwDtETG~~~~~f~~------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv----qeYd~- 340 (503)
T KOG0282|consen 278 FD------RFLKLWDTETGQVLSRFHL------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV----QEYDR- 340 (503)
T ss_pred cc------eeeeeeccccceEEEEEec------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH----HHHHh-
Confidence 33 2488899999988755444 3567889999998 89999999999999998643321 12221
Q ss_pred cccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEE
Q 039428 199 EWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLV 278 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~ 278 (335)
.+...+.|.|-++|.-+|+.+....+..++...+- ..+.+.-... ...| -+++.|++.++++.+..|.+.++
T Consensus 341 ----hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v-~ik~i~~~~~--hsmP-~~~~~P~~~~~~aQs~dN~i~if 412 (503)
T KOG0282|consen 341 ----HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV-PIKNIADPEM--HTMP-CLTLHPNGKWFAAQSMDNYIAIF 412 (503)
T ss_pred ----hhhheeeeEEccCCceEeeeccCccEEEEEcCCCc-cchhhcchhh--ccCc-ceecCCCCCeehhhccCceEEEE
Confidence 23347899999999889988888877777766541 1122221221 2345 58999999999997766877766
Q ss_pred Ec
Q 039428 279 ES 280 (335)
Q Consensus 279 ~~ 280 (335)
..
T Consensus 413 s~ 414 (503)
T KOG0282|consen 413 ST 414 (503)
T ss_pred ec
Confidence 54
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0066 Score=56.99 Aligned_cols=197 Identities=16% Similarity=0.182 Sum_probs=118.4
Q ss_pred eeeeEEcCCCCEEEEEecCC--eEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCe-EEEEEecCCCCcc
Q 039428 51 CETAKWDDVGRRFLVSFLDG--GVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNR-LLVAFTDVLGNKY 127 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~--~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~-l~v~~~D~~~~~~ 127 (335)
..++-++|.-.++.+...++ +||.+| ...+. .+....+-.+| ..-.++.+ +|. ..++ +. ++
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvD-Gk~N~---~lqS~~l~~fP------i~~a~f~p-~G~~~i~~-s~---rr- 279 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVD-GKVNP---KLQSIHLEKFP------IQKAEFAP-NGHSVIFT-SG---RR- 279 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEec-CccCh---hheeeeeccCc------cceeeecC-CCceEEEe-cc---cc-
Confidence 46889999999998885555 567776 22221 12111111111 23456665 555 3332 22 22
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
..++.||+.+.++.......+. +.....-..|.+++++.+....+|-|+.+...++... ..|..+ ...
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~--e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli----~s~Kie------G~v 347 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGV--EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI----TSFKIE------GVV 347 (514)
T ss_pred eEEEEeeccccccccccCCCCc--ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhh----heeeec------cEE
Confidence 4689999998877643333221 1234455788999987777778899999988755432 123322 136
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
.+++|+.|+..+++..+.|+||++|++... ....+...|. -.-.-++...+|.++.++..++-+.+++
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~-~~~rf~D~G~---v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQNS-CLHRFVDDGS---VHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCCcc-eEEEEeecCc---cceeeeeecCCCceEEeccCcceEEEec
Confidence 789999999555555678899999999874 5555554442 1233455557777655565444444444
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.02 Score=51.64 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=79.2
Q ss_pred cceEEEeC--CCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCcc-CCCCCCceeECCCCcEEEEe--------
Q 039428 103 TMGIAVDR--PRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSE-EKSTADDIAVDAEGNAYVTD-------- 171 (335)
Q Consensus 103 p~Gi~~d~--~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~p~~~~vd~~G~lyV~d-------- 171 (335)
-.|+++.. ..+.||+ +|..+. +|-+||-.=.++.....+..|.- ....|.+|..- .|++||+=
T Consensus 140 YkGLAi~~~~~~~~LYa--adF~~g---~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~~~ 213 (336)
T TIGR03118 140 YKGLAVGPTGGGDYLYA--ANFRQG---RIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDADRN 213 (336)
T ss_pred eeeeEEeecCCCceEEE--eccCCC---ceEEecCccccccCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCCccc
Confidence 36777753 2578999 576544 58888854322221111212211 13556666542 47899972
Q ss_pred -----CCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccC------CeEEEEECCCCEEEEEeCCCC
Q 039428 172 -----VVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD------GFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 172 -----~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d------g~Lyvad~~~~~v~~~d~~~~ 236 (335)
...+-|-+||++|+.++.+.+. +.+..|-||++.|. |.|+|.+.++++|-.||+.++
T Consensus 214 d~v~G~G~G~VdvFd~~G~l~~r~as~--------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 214 DEVAGAGLGYVNVFTLNGQLLRRVASS--------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred ccccCCCcceEEEEcCCCcEEEEeccC--------CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 2357899999999998855332 13456999999773 589999999999999999865
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0067 Score=56.33 Aligned_cols=231 Identities=14% Similarity=0.236 Sum_probs=133.6
Q ss_pred cCCCcceeeeEEcCC-CC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 45 HSPSFLCETAKWDDV-GR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 45 ~~~~~~pegia~d~~-g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
.+-....-++.|+|. .+ -+.....+|++--|+. ++..| +. ...+ .+.+..-++++| +|+...+.+ .
T Consensus 214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~-~~e~~---l~-----~l~g-H~~RVs~VafHP-sG~~L~Tas-f 281 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL-SQETP---LQ-----DLEG-HLARVSRVAFHP-SGKFLGTAS-F 281 (459)
T ss_pred eccccceeeEEEccCCCccceeeeccCCceeeecc-CCCcc---hh-----hhhc-chhhheeeeecC-CCceeeecc-c
Confidence 333345668889987 34 4444477887777753 33311 11 1111 113567899998 677766421 1
Q ss_pred CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC--CeEEEEccCCcEEEEecCCccccccc
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS--SKIWKVGVEGQLLSIIRSPLFTAKEW 200 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~--~~I~~~d~~g~~~~~~~~~~~~~~~~ 200 (335)
+ +.-..||.+++..... .. +. -....++++.+||.+..+.... ++||=+.. |+.+-++. +.
T Consensus 282 --D--~tWRlWD~~tk~ElL~--QE--GH-s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~-gH------ 344 (459)
T KOG0272|consen 282 --D--STWRLWDLETKSELLL--QE--GH-SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLA-GH------ 344 (459)
T ss_pred --c--cchhhcccccchhhHh--hc--cc-ccccceeEecCCCceeeccCccchhheeeccc-CcEEEEec-cc------
Confidence 1 2466789888754421 11 11 3456789999999999886653 55554433 33333232 11
Q ss_pred cccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC-CCcEEEEecCCCeEEEEE
Q 039428 201 YKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS-PTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~-~g~l~va~~~~~~~~v~~ 279 (335)
....-+++|+|.|+...+-+.++++.+.|+...+ .+..++.. -+....+.+.+ .|...++....+.+++..
T Consensus 345 ---~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~-~ly~ipAH----~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 345 ---IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS-ELYTIPAH----SNLVSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred ---ccceeeEeECCCceEEeecCCCCcEEEeeecccc-cceecccc----cchhhheEecccCCeEEEEcccCcceeeec
Confidence 1227899999999999999899988888888764 44455432 23467899998 466667755456666654
Q ss_pred cCCCcEEEEEeeeecCCCCCcceEEEEe-CCeEEEEecc
Q 039428 280 SSDGWETASVVAKFNGPTHRVATAATVK-DGRVYLSHLL 317 (335)
Q Consensus 280 ~~~~~~~~~~~~~~~~p~~~~Pt~va~~-~g~lyV~~~~ 317 (335)
..+|... ..+.+..... .++.+. ++...++..+
T Consensus 417 -~~~~~~~---ksLaGHe~kV-~s~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 417 -TRTWSPL---KSLAGHEGKV-ISLDISPDSQAIATSSF 450 (459)
T ss_pred -CCCcccc---hhhcCCccce-EEEEeccCCceEEEecc
Confidence 3445432 3332332221 345554 4444445443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.051 Score=53.42 Aligned_cols=191 Identities=18% Similarity=0.202 Sum_probs=98.4
Q ss_pred eEEEeCCCCeEEEEEecCC------------CCccceEEEEECCCCeEEEEeecCCCc----cCCCCCC--ceeECCCCc
Q 039428 105 GIAVDRPRNRLLVAFTDVL------------GNKYSALAAYDLSTWKRLFLTQLSGKS----EEKSTAD--DIAVDAEGN 166 (335)
Q Consensus 105 Gi~~d~~~g~l~v~~~D~~------------~~~~~~v~~~d~~~~~~~~~~~~~~~~----~~~~~p~--~~~vd~~G~ 166 (335)
..++|+.++.+|+...+.. +...+.|+.+|.++|+.++......+. .....|. ++. +-+|.
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~ 299 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGK 299 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCC
Confidence 4677766789999654321 001136999999999998776542210 0011111 111 12343
Q ss_pred ----EEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeEEEccCCeEEEEE-----------------CC
Q 039428 167 ----AYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIH-----------------MC 224 (335)
Q Consensus 167 ----lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad-----------------~~ 224 (335)
+|+. +..+.++.+|++ |+.+.... . .-.+++.++ +.+|+.. ..
T Consensus 300 ~~~~V~~g-~~~G~l~ald~~tG~~~W~~~---~----------~~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~ 364 (488)
T cd00216 300 PVPAIVHA-PKNGFFYVLDRTTGKLISARP---E----------VEQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPG 364 (488)
T ss_pred eeEEEEEE-CCCceEEEEECCCCcEeeEeE---e----------eccccccCC-ceEEEccccccccCcccccCCCCCCC
Confidence 5554 567899999986 44433110 0 013445554 6777642 13
Q ss_pred CCEEEEEeCCCCceeEEEEeccCCc---CCCCC--Ce-EEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCC--
Q 039428 225 SGNLFKIDIRKEEEEVKLIELRGGS---SLSLG--DG-LALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGP-- 296 (335)
Q Consensus 225 ~~~v~~~d~~~~~~~~~~~~~~g~~---~~~~p--dG-ia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p-- 296 (335)
.++|+.+|..+++ .+-..+..... .+..| .+ +++ ..+.+|+.+. .+.+..++..+| +.+-++..+
T Consensus 365 ~G~l~AlD~~tG~-~~W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~-dG~l~ald~~tG----~~lW~~~~~~~ 437 (488)
T cd00216 365 KGGLAALDPKTGK-VVWEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAA-DGYFRAFDATTG----KELWKFRTPSG 437 (488)
T ss_pred ceEEEEEeCCCCc-EeeEeeCCccccccccCCcccCcceEe-cCCeEEEECC-CCeEEEEECCCC----ceeeEEECCCC
Confidence 5789999988874 22223322000 00011 12 333 3467888754 356777776665 222222212
Q ss_pred CCCcceEEEE-eCCeEEEEeccCCC
Q 039428 297 THRVATAATV-KDGRVYLSHLLGLG 320 (335)
Q Consensus 297 ~~~~Pt~va~-~~g~lyV~~~~~~~ 320 (335)
....| +++ .+|++||....|.+
T Consensus 438 ~~a~P--~~~~~~g~~yv~~~~g~~ 460 (488)
T cd00216 438 IQATP--MTYEVNGKQYVGVMVGGG 460 (488)
T ss_pred ceEcC--EEEEeCCEEEEEEEecCC
Confidence 11112 333 58999997666543
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.023 Score=54.71 Aligned_cols=158 Identities=12% Similarity=0.106 Sum_probs=92.7
Q ss_pred eeEEcCCCCEEEEE-ec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 53 TAKWDDVGRRFLVS-FL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 53 gia~d~~g~~~~~~-~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
...|+|+|+.+++. .. +..|+.++..++. .. ++...+. ......++|++.+|+.++ |..+. ..
T Consensus 237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-----~~--~LT~~~~----~d~~p~~SPDG~~I~F~S-dr~g~--~~ 302 (419)
T PRK04043 237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-----LT--QITNYPG----IDVNGNFVEDDKRIVFVS-DRLGY--PN 302 (419)
T ss_pred eeEECCCCCEEEEEEccCCCcEEEEEECCCCc-----EE--EcccCCC----ccCccEECCCCCEEEEEE-CCCCC--ce
Confidence 46899999766555 32 3589999864443 12 1211221 122346787555777753 43332 46
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc--EEEEeCC-------CCeEEEEccCCcEEEEecCCccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN--AYVTDVV-------SSKIWKVGVEGQLLSIIRSPLFTAKEW 200 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~--lyV~d~~-------~~~I~~~d~~g~~~~~~~~~~~~~~~~ 200 (335)
|+++|.++++....... + .. + ..++|||+ +|++... ...|+.++.++...+.+...
T Consensus 303 Iy~~dl~~g~~~rlt~~---g--~~--~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~------- 367 (419)
T PRK04043 303 IFMKKLNSGSVEQVVFH---G--KN--N-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN------- 367 (419)
T ss_pred EEEEECCCCCeEeCccC---C--Cc--C-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-------
Confidence 99999998876432211 1 11 2 47899986 3444322 15899999886655433211
Q ss_pred cccccccCeEEEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEec
Q 039428 201 YKNVFGLNGIVYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIEL 245 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~ 245 (335)
..-....++||| .|+++... ...|+.+++++. ..+.+..
T Consensus 368 ----~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~--~~~~l~~ 409 (419)
T PRK04043 368 ----GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN--KSFLFPL 409 (419)
T ss_pred ----CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC--eeEEeec
Confidence 012347899999 56555433 336999999987 4455543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.071 Score=52.89 Aligned_cols=83 Identities=14% Similarity=0.065 Sum_probs=50.8
Q ss_pred ceEEEeCCCCeEEEEEecC----CC----Cc--cceEEEEECCCCeEEEEeecCCCcc----CCCCCCceeECCCCc---
Q 039428 104 MGIAVDRPRNRLLVAFTDV----LG----NK--YSALAAYDLSTWKRLFLTQLSGKSE----EKSTADDIAVDAEGN--- 166 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~----~~----~~--~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~p~~~~vd~~G~--- 166 (335)
..+++|++.+.+|+.+... .. +. .+.|+.+|++||++++..+...... ....|.=+.++.+|+
T Consensus 237 ~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~ 316 (527)
T TIGR03075 237 GTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRK 316 (527)
T ss_pred CceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEE
Confidence 4678999899999976431 11 11 2589999999999987655421100 012222222234554
Q ss_pred EEEEeCCCCeEEEEccC-CcE
Q 039428 167 AYVTDVVSSKIWKVGVE-GQL 186 (335)
Q Consensus 167 lyV~d~~~~~I~~~d~~-g~~ 186 (335)
+.+.-..+|.+|++|+. |+.
T Consensus 317 ~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 317 LLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEeCCCceEEEEECCCCce
Confidence 66667778888888876 454
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0098 Score=51.99 Aligned_cols=151 Identities=21% Similarity=0.242 Sum_probs=84.3
Q ss_pred CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeE
Q 039428 61 RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKR 140 (335)
Q Consensus 61 ~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~ 140 (335)
+.+|+...+++|+.+|..+|+ ++-+......+......+....++ ++.+|+... . ..|+.+|+++|++
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~----~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~----g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGK----VLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTS--S----GKLVALDPKTGKL 144 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSC----EEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEET--C----SEEEEEETTTTEE
T ss_pred cccccccceeeeEecccCCcc----eeeeeccccccccccccccCceEe--cCEEEEEec--c----CcEEEEecCCCcE
Confidence 344444456799999976776 121100000111111233445555 678888532 2 4699999999999
Q ss_pred EEEeecCCCccCC-----CC-CCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEcc
Q 039428 141 LFLTQLSGKSEEK-----ST-ADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHP 214 (335)
Q Consensus 141 ~~~~~~~~~~~~~-----~~-p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~ 214 (335)
++......+.... .. ...+.++ +|++|++.... .++.+|....... +... + ..+.++....
T Consensus 145 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~g-~~~~~d~~tg~~~-w~~~-~---------~~~~~~~~~~ 211 (238)
T PF13360_consen 145 LWKYPVGEPRGSSPISSFSDINGSPVIS-DGRVYVSSGDG-RVVAVDLATGEKL-WSKP-I---------SGIYSLPSVD 211 (238)
T ss_dssp EEEEESSTT-SS--EEEETTEEEEEECC-TTEEEEECCTS-SEEEEETTTTEEE-EEEC-S---------S-ECECEECC
T ss_pred EEEeecCCCCCCcceeeecccccceEEE-CCEEEEEcCCC-eEEEEECCCCCEE-EEec-C---------CCccCCceee
Confidence 8777663211000 00 1223333 55899986554 4677787755433 2211 1 1244434444
Q ss_pred CCeEEEEECCCCEEEEEeCCCCc
Q 039428 215 DGFLIVIHMCSGNLFKIDIRKEE 237 (335)
Q Consensus 215 dg~Lyvad~~~~~v~~~d~~~~~ 237 (335)
++.||+.+ ..++|+.+|+.+++
T Consensus 212 ~~~l~~~~-~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 212 GGTLYVTS-SDGRLYALDLKTGK 233 (238)
T ss_dssp CTEEEEEE-TTTEEEEEETTTTE
T ss_pred CCEEEEEe-CCCEEEEEECCCCC
Confidence 66999998 78999999999873
|
... |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.055 Score=50.83 Aligned_cols=199 Identities=17% Similarity=0.164 Sum_probs=99.9
Q ss_pred CCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCc------ceEEEeCCCCe--EEEEEecCCC-Cccc
Q 039428 58 DVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNAT------MGIAVDRPRNR--LLVAFTDVLG-NKYS 128 (335)
Q Consensus 58 ~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p------~Gi~~d~~~g~--l~v~~~D~~~-~~~~ 128 (335)
|...+++.+...+.++++|. +|+ .+. .+.. .++ .|+.+. +.. |-++ .+... ...-
T Consensus 66 p~kSlIigTdK~~GL~VYdL-~Gk----~lq---~~~~-----Gr~NNVDvrygf~l~--g~~vDlava-s~R~~g~n~l 129 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDL-DGK----ELQ---SLPV-----GRPNNVDVRYGFPLN--GKTVDLAVA-SDRSDGRNSL 129 (381)
T ss_dssp GGG-EEEEEETTTEEEEEET-TS-----EEE---EE-S-----S-EEEEEEEEEEEET--TEEEEEEEE-EE-CCCT-EE
T ss_pred cccceEEEEeCCCCEEEEcC-CCc----EEE---eecC-----CCcceeeeecceecC--CceEEEEEE-ecCcCCCCeE
Confidence 44456666677889999995 576 122 2211 133 333332 222 3343 33321 1113
Q ss_pred eEEEEECCCCeEEEEeecCCC-ccCCCCCCceeEC--C-CCcEEEE-eCCCCeEEE--Ecc--CCcEE-EEecCCccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGK-SEEKSTADDIAVD--A-EGNAYVT-DVVSSKIWK--VGV--EGQLL-SIIRSPLFTAK 198 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~-~~~~~~p~~~~vd--~-~G~lyV~-d~~~~~I~~--~d~--~g~~~-~~~~~~~~~~~ 198 (335)
+++++|++++.+....+...+ ......+.|++.- + +|.+|+- ....|.+.. +.. +|... +.. ..|..
T Consensus 130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lV--R~f~~- 206 (381)
T PF02333_consen 130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLV--REFKV- 206 (381)
T ss_dssp EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEE--EEEE--
T ss_pred EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEE--EEecC-
Confidence 588889888866533322111 1124557788873 3 4665542 223355543 332 23221 111 12221
Q ss_pred cccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCce-eEEEEe-ccCCcCCCCCCeEEEc--CC--CcEEEEecC
Q 039428 199 EWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEE-EVKLIE-LRGGSSLSLGDGLALL--SP--TKLVVAGNP 271 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~-~~~~~~-~~g~~~~~~pdGia~d--~~--g~l~va~~~ 271 (335)
...+.|+++|.+. +||+++... -||+++.+...+ ..+.+. ..+.....-..||++- .+ |-|++++.+
T Consensus 207 -----~sQ~EGCVVDDe~g~LYvgEE~~-GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG 280 (381)
T PF02333_consen 207 -----GSQPEGCVVDDETGRLYVGEEDV-GIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG 280 (381)
T ss_dssp -----SS-EEEEEEETTTTEEEEEETTT-EEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred -----CCcceEEEEecccCCEEEecCcc-EEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence 1258999999864 999999765 599999986421 233443 2332322457899994 33 457777776
Q ss_pred CCeEEEEEcC
Q 039428 272 YPSARLVESS 281 (335)
Q Consensus 272 ~~~~~v~~~~ 281 (335)
.++-.|++-.
T Consensus 281 ~~sf~Vy~r~ 290 (381)
T PF02333_consen 281 DNSFAVYDRE 290 (381)
T ss_dssp GTEEEEEESS
T ss_pred CCeEEEEecC
Confidence 6777777643
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.021 Score=59.63 Aligned_cols=194 Identities=10% Similarity=0.101 Sum_probs=116.8
Q ss_pred eeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 52 ETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 52 egia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
.+++|++. ++.++++..++.|..||..+++ .+. .+ .+.. .....+++++.++.++++.... ..|
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~----~~~---~~--~~H~-~~V~~l~~~p~~~~~L~Sgs~D-----g~v 600 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQ----LVT---EM--KEHE-KRVWSIDYSSADPTLLASGSDD-----GSV 600 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCe----EEE---Ee--cCCC-CCEEEEEEcCCCCCEEEEEcCC-----CEE
Confidence 57788775 5555555778999999964443 111 11 1111 3467899986456666543211 359
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeE-CCCCcEEEEeCCCCeEEEEccCCcE--EEEecCCcccccccccccccc
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAV-DAEGNAYVTDVVSSKIWKVGVEGQL--LSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~v-d~~G~lyV~d~~~~~I~~~d~~g~~--~~~~~~~~~~~~~~~~~~~~p 207 (335)
..||..++........ ......+.+ .++|+.+++.+..+.|+.+|..... ...+. . .....
T Consensus 601 ~iWd~~~~~~~~~~~~------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-----~-----h~~~V 664 (793)
T PLN00181 601 KLWSINQGVSIGTIKT------KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-----G-----HSKTV 664 (793)
T ss_pred EEEECCCCcEEEEEec------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-----C-----CCCCE
Confidence 9999987765533221 123345666 3568888888889999999976322 11111 0 11235
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCc-----eeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEE-----EEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~-----~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
..+++. ++..+++-+.++.|..+|+.... .....+. + . .....-+++++++.++++....+.+.+.+..
T Consensus 665 ~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--g-h-~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 665 SYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM--G-H-TNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred EEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--C-C-CCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 677886 66556666678888888876421 0223332 2 1 1235678899988877776655777776643
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0064 Score=57.06 Aligned_cols=231 Identities=11% Similarity=0.074 Sum_probs=136.3
Q ss_pred eeeEEcCCCC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 52 ETAKWDDVGR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 52 egia~d~~g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
....+.|+|. ..+++....-+|.||..+.+ +. ++-...++......-..+++ .+.+.+. +... +.|
T Consensus 261 ~~a~f~p~G~~~i~~s~rrky~ysyDle~ak-----~~--k~~~~~g~e~~~~e~FeVSh-d~~fia~-~G~~----G~I 327 (514)
T KOG2055|consen 261 QKAEFAPNGHSVIFTSGRRKYLYSYDLETAK-----VT--KLKPPYGVEEKSMERFEVSH-DSNFIAI-AGNN----GHI 327 (514)
T ss_pred ceeeecCCCceEEEecccceEEEEeeccccc-----cc--cccCCCCcccchhheeEecC-CCCeEEE-cccC----ceE
Confidence 5678899998 66666767789999975443 12 12111111112445667776 4443332 3222 348
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
..+-..+++.+....+ .+...+++++.||+ +|++ ...|.||++|........ .|... +...-..
T Consensus 328 ~lLhakT~eli~s~Ki------eG~v~~~~fsSdsk~l~~~-~~~GeV~v~nl~~~~~~~----rf~D~----G~v~gts 392 (514)
T KOG2055|consen 328 HLLHAKTKELITSFKI------EGVVSDFTFSSDSKELLAS-GGTGEVYVWNLRQNSCLH----RFVDD----GSVHGTS 392 (514)
T ss_pred Eeehhhhhhhhheeee------ccEEeeEEEecCCcEEEEE-cCCceEEEEecCCcceEE----EEeec----Cccceee
Confidence 8887788877644333 23456899999986 5555 556799999987543221 12211 1234567
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCC--ceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEec-CCCeEEEEEcCCCcE
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKE--EEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGN-PYPSARLVESSDGWE 285 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~--~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~-~~~~~~v~~~~~~~~ 285 (335)
+|.+.+|.++.+-+..|-|-.+|.+.- ...++.+.... ..-...+.|.+.++.. |.+|.. ..+.++.+..+.
T Consensus 393 ~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d-NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS--- 468 (514)
T KOG2055|consen 393 LCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD-NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS--- 468 (514)
T ss_pred eeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh-hhheeeeeeeeCcchhhhhhhhhccccceEEEeccc---
Confidence 888899998888888999888886652 00222221111 1012357889998875 555533 346788888753
Q ss_pred EEEEeeeecCC--CCCcceEEEEe--CCeEEEEe
Q 039428 286 TASVVAKFNGP--THRVATAATVK--DGRVYLSH 315 (335)
Q Consensus 286 ~~~~~~~~~~p--~~~~Pt~va~~--~g~lyV~~ 315 (335)
.++...+..+ ...++++++|. +|.+-|..
T Consensus 469 -~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 469 -CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred -eeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 2333333211 24567889995 67777744
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0016 Score=64.08 Aligned_cols=118 Identities=25% Similarity=0.355 Sum_probs=70.2
Q ss_pred CCcceEEEeCCCCeEEEEEecCC--------------CCccceEEEEECCCC-------eEE-EEeecC-----------
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVL--------------GNKYSALAAYDLSTW-------KRL-FLTQLS----------- 147 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~--------------~~~~~~v~~~d~~~~-------~~~-~~~~~~----------- 147 (335)
.+|.+|.+++.++.+|++..+.. .+...+|++|+++.+ ... +.....
T Consensus 350 ~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~ 429 (524)
T PF05787_consen 350 DRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNK 429 (524)
T ss_pred cCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCc
Confidence 56899999998999999865443 222368999998765 222 111111
Q ss_pred CCccCCCCCCceeECCCCcEEEEe-CCCCe--EEEEccCCcEEEEec---------C------CccccccccccccccCe
Q 039428 148 GKSEEKSTADDIAVDAEGNAYVTD-VVSSK--IWKVGVEGQLLSIIR---------S------PLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 148 ~~~~~~~~p~~~~vd~~G~lyV~d-~~~~~--I~~~d~~g~~~~~~~---------~------~~~~~~~~~~~~~~p~G 209 (335)
.....+..|..|+||++|+|||+. ...+. |.-..++|....+.. . ..|. ..+......|
T Consensus 430 ~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~---~~P~gaE~tG 506 (524)
T PF05787_consen 430 CDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFL---VGPNGAEITG 506 (524)
T ss_pred ccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeec---cCCCCccccc
Confidence 012237899999999999999973 33222 223333332211100 0 0111 0123344789
Q ss_pred EEEccCC-eEEEE
Q 039428 210 IVYHPDG-FLIVI 221 (335)
Q Consensus 210 ia~~~dg-~Lyva 221 (335)
++++||+ .|||.
T Consensus 507 ~~fspDg~tlFvn 519 (524)
T PF05787_consen 507 PCFSPDGRTLFVN 519 (524)
T ss_pred ceECCCCCEEEEE
Confidence 9999999 88875
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.046 Score=51.80 Aligned_cols=209 Identities=14% Similarity=0.114 Sum_probs=96.4
Q ss_pred CCCEEEEE-ecCCeEEEEECCC-CCCCcceeeeeEEeecCCcC---C-CCcceEEEeCCCCeEEEEE-ecCCCCccceEE
Q 039428 59 VGRRFLVS-FLDGGVGQVLVPD-EYSPGTVLEEVKLVKEDDVV---G-NATMGIAVDRPRNRLLVAF-TDVLGNKYSALA 131 (335)
Q Consensus 59 ~g~~~~~~-~~~~~I~~~d~~~-g~~~~~v~~~~~~~~~~~~~---~-~~p~Gi~~d~~~g~l~v~~-~D~~~~~~~~v~ 131 (335)
+.+.+++- ..+++||++|... -+.| + +. +++...++. + ..|+-+..-+ +|+++|.. +|..++....++
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P-~-l~--KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~ 160 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKP-R-LH--KVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFV 160 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS--E-EE--EEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCC-c-eE--eeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEE
Confidence 44555555 7789999999542 2222 1 22 244211111 1 2567777776 78888865 343333346899
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC--------------------CCCeEEEEccCCcEE-EEe
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV--------------------VSSKIWKVGVEGQLL-SII 190 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~--------------------~~~~I~~~d~~g~~~-~~~ 190 (335)
.+|-++.++.-...... ....+-.|....+..|+.||.+ +.+++..+|...+.. +.+
T Consensus 161 llD~~tf~v~g~We~~~--~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~i 238 (461)
T PF05694_consen 161 LLDGETFEVKGRWEKDR--GPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTI 238 (461)
T ss_dssp EE-TTT--EEEE--SB---TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEE
T ss_pred EEcCccccccceeccCC--CCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEE
Confidence 99998877764433321 1245667999999988888743 367889999775443 333
Q ss_pred cCCccccccccccccccCeEEEc--cCC-eEEEEECCCCEEEEEeCCCCce--eEEEEeccC-----Cc--CC-------
Q 039428 191 RSPLFTAKEWYKNVFGLNGIVYH--PDG-FLIVIHMCSGNLFKIDIRKEEE--EVKLIELRG-----GS--SL------- 251 (335)
Q Consensus 191 ~~~~~~~~~~~~~~~~p~Gia~~--~dg-~Lyvad~~~~~v~~~d~~~~~~--~~~~~~~~g-----~~--~~------- 251 (335)
.-+. ....|--|-+. |+. +=||.-..+.+|+++-.+.+.. ...++.++. .. .+
T Consensus 239 dLg~--------~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~ 310 (461)
T PF05694_consen 239 DLGE--------EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAV 310 (461)
T ss_dssp ES-T--------TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE
T ss_pred ecCC--------CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccC
Confidence 2110 01113333333 333 6677776788888886643311 222333321 10 01
Q ss_pred -CCCCeEEEcCCC-cEEEEecCCCeEEEEEcCC
Q 039428 252 -SLGDGLALLSPT-KLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 252 -~~pdGia~d~~g-~l~va~~~~~~~~v~~~~~ 282 (335)
+.+..|.+..|+ .|||+++..+.+|.++..|
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 345677777666 5999999889999988765
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.078 Score=55.39 Aligned_cols=197 Identities=12% Similarity=0.043 Sum_probs=112.9
Q ss_pred ceeeeEEcC-CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDD-VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~-~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.-.+++|++ ++++++++..++.|..||...+.. +. .+... .....+.+.+.++.++++.. .. +
T Consensus 577 ~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~----~~---~~~~~----~~v~~v~~~~~~g~~latgs-~d----g 640 (793)
T PLN00181 577 RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS----IG---TIKTK----ANICCVQFPSESGRSLAFGS-AD----H 640 (793)
T ss_pred CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE----EE---EEecC----CCeEEEEEeCCCCCEEEEEe-CC----C
Confidence 356899986 677777778889999999654431 21 22111 13456666544566655422 11 3
Q ss_pred eEEEEECCCCeE-EEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-------EEEEecCCccccccc
Q 039428 129 ALAAYDLSTWKR-LFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-------LLSIIRSPLFTAKEW 200 (335)
Q Consensus 129 ~v~~~d~~~~~~-~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-------~~~~~~~~~~~~~~~ 200 (335)
.|..||.+.... ..... . . ......+.+. ++..+++.+..+.|..+|.... ....+ ..
T Consensus 641 ~I~iwD~~~~~~~~~~~~--~--h-~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-----~g--- 706 (793)
T PLN00181 641 KVYYYDLRNPKLPLCTMI--G--H-SKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-----MG--- 706 (793)
T ss_pred eEEEEECCCCCccceEec--C--C-CCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-----cC---
Confidence 599999876542 21111 1 1 2334567775 5667777777888888886521 11111 11
Q ss_pred cccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccC-C--------cCCCCCCeEEEcCCCcEEEEecC
Q 039428 201 YKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRG-G--------SSLSLGDGLALLSPTKLVVAGNP 271 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g-~--------~~~~~pdGia~d~~g~l~va~~~ 271 (335)
.....+.+++++++.++++-+.+++|..++..... ....+.... + ........+++.+++..+++...
T Consensus 707 --h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~ 783 (793)
T PLN00181 707 --HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM-PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANS 783 (793)
T ss_pred --CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC-ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecC
Confidence 11235778999999877888889999999876542 111111100 0 00011356677777777677554
Q ss_pred CCeEEEEE
Q 039428 272 YPSARLVE 279 (335)
Q Consensus 272 ~~~~~v~~ 279 (335)
.+.+++++
T Consensus 784 dG~I~i~~ 791 (793)
T PLN00181 784 TGNIKILE 791 (793)
T ss_pred CCcEEEEe
Confidence 45566654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0018 Score=60.96 Aligned_cols=196 Identities=12% Similarity=0.128 Sum_probs=130.4
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..+.|..+|..|.....+..|--||.++|+ ++. ++. . +..|.-+.+.|++.+++++. ... .+|.
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~----~~~--~f~-~----~~~~~cvkf~pd~~n~fl~G--~sd---~ki~ 325 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQ----VLS--RFH-L----DKVPTCVKFHPDNQNIFLVG--GSD---KKIR 325 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccce----EEE--EEe-c----CCCceeeecCCCCCcEEEEe--cCC---CcEE
Confidence 578999999999888889999999987676 122 122 1 23577888998665777742 222 4699
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEE-EEecCCccccccccccccccCeE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLL-SIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~-~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
.||.++++++..++- .....+++.|=++|+-||+.+....+..++.+-... ..+... ....--.+
T Consensus 326 ~wDiRs~kvvqeYd~-----hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~---------~~hsmP~~ 391 (503)
T KOG0282|consen 326 QWDIRSGKVVQEYDR-----HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP---------EMHTMPCL 391 (503)
T ss_pred EEeccchHHHHHHHh-----hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcch---------hhccCcce
Confidence 999999986522211 145678899999999999988877777776653322 111111 11223468
Q ss_pred EEccCCeEEEEECCCCEEEEEeCCCCc--eeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 211 VYHPDGFLIVIHMCSGNLFKIDIRKEE--EEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 211 a~~~dg~Lyvad~~~~~v~~~d~~~~~--~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
++.|.+..+.+++-.++|+.|.+...- ...+.+. |-..-+++-.+.+.+||...+++...+.+...+
T Consensus 392 ~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe--Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 392 TLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE--GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred ecCCCCCeehhhccCceEEEEecccccccCHhhhhc--ceeccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence 899999999999999999998876530 0112222 101124577889999999888877555555444
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.024 Score=57.50 Aligned_cols=212 Identities=13% Similarity=0.128 Sum_probs=124.2
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
....|++++|..-...++..+|.|.-||-.=+. .+. ++ .+. .+...||.+++ ++-|||..+|..
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~t----li~--rF---deH-dGpVRgv~FH~-~qplFVSGGDDy----- 73 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT----LID--RF---DEH-DGPVRGVDFHP-TQPLFVSGGDDY----- 73 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhh----HHh--hh---hcc-CCccceeeecC-CCCeEEecCCcc-----
Confidence 346799999998777777889999999842222 122 12 221 13568999997 788999655432
Q ss_pred eEEEEECCCCeEEEE----------eecC----------C------------------CccCCCCCCceeECCCCcEEEE
Q 039428 129 ALAAYDLSTWKRLFL----------TQLS----------G------------------KSEEKSTADDIAVDAEGNAYVT 170 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~----------~~~~----------~------------------~~~~~~~p~~~~vd~~G~lyV~ 170 (335)
.|.+|+.+..+..+. ..+- . .+. -++..-..|.|.-.+.|+
T Consensus 74 kIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH-nHYVMcAqFhptEDlIVS 152 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH-NHYVMCAQFHPTEDLIVS 152 (1202)
T ss_pred EEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC-ceEEEeeccCCccceEEE
Confidence 355555544332110 0000 0 000 233344445554456666
Q ss_pred eCCCCeEEEEccCCcEEEEecC--------------Ccccccc------ccccccccCeEEEccCCeEEEEECCCCEEEE
Q 039428 171 DVVSSKIWKVGVEGQLLSIIRS--------------PLFTAKE------WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFK 230 (335)
Q Consensus 171 d~~~~~I~~~d~~g~~~~~~~~--------------~~~~~~~------~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~ 230 (335)
-+...+|.++|-.|-....... ..|..++ ..+...+.|=.+|.|---|+|+-.++++|.-
T Consensus 153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeE
Confidence 6667777777765522211000 0121111 1234457888899987789999887776544
Q ss_pred EeCCCCceeEEEEec-cCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 231 IDIRKEEEEVKLIEL-RGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 231 ~d~~~~~~~~~~~~~-~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
...+.. ....++. .| + .+..+++-++|..++++++.....++|.+..
T Consensus 233 Wrmnet--KaWEvDtcrg-H-~nnVssvlfhp~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 233 WRMNET--KAWEVDTCRG-H-YNNVSSVLFHPHQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred EEeccc--cceeehhhhc-c-cCCcceEEecCccceeEecCCCccEEEEecc
Confidence 444443 2222332 23 3 5678999999999999998876788887754
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.037 Score=52.34 Aligned_cols=173 Identities=11% Similarity=0.008 Sum_probs=96.8
Q ss_pred CCcceEEEeCCCCeEEEEEecCC-------CCc-cceEEEEECCCCeEEEEeecCC---CccCCCCCCceeECCC-CcEE
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVL-------GNK-YSALAAYDLSTWKRLFLTQLSG---KSEEKSTADDIAVDAE-GNAY 168 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~-------~~~-~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~p~~~~vd~~-G~ly 168 (335)
+.-.-|.++| +|.|||+..+.. ... ...+++++.++.... .-+... -..+.-.|.+++++|. |.+|
T Consensus 177 H~g~~l~f~p-DG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~-d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw 254 (399)
T COG2133 177 HFGGRLVFGP-DGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPA-DNPFPNSEIWSYGHRNPQGLAWHPVTGALW 254 (399)
T ss_pred cCcccEEECC-CCcEEEEeCCCCCcccccCccccccceeeeccCccccc-CCCCCCcceEEeccCCccceeecCCCCcEE
Confidence 4557899998 779999876652 110 134555554432111 000000 0113578899999998 9999
Q ss_pred EEeCCCCeE------EEEccCCcE----EEEecC---C----------cccccc-ccccccccCeEEEccC-------Ce
Q 039428 169 VTDVVSSKI------WKVGVEGQL----LSIIRS---P----------LFTAKE-WYKNVFGLNGIVYHPD-------GF 217 (335)
Q Consensus 169 V~d~~~~~I------~~~d~~g~~----~~~~~~---~----------~~~~~~-~~~~~~~p~Gia~~~d-------g~ 217 (335)
+++-....+ ..+.+ |+. ...++. + ....|. .-.....|-||+|... +.
T Consensus 255 ~~e~g~d~~~~~Deln~i~~-G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~ 333 (399)
T COG2133 255 TTEHGPDALRGPDELNSIRP-GKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGD 333 (399)
T ss_pred EEecCCCcccCccccccccc-CCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCc
Confidence 998665333 22211 111 111110 0 000010 0112245799999953 68
Q ss_pred EEEEECCCCEEEEEeCCCCc-eeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC-CCeEEEE
Q 039428 218 LIVIHMCSGNLFKIDIRKEE-EEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP-YPSARLV 278 (335)
Q Consensus 218 Lyvad~~~~~v~~~d~~~~~-~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~-~~~~~v~ 278 (335)
|||+...+-.+.+.+++++. -..+-+ +.++. -..|-++++.+||.|++++.. ++.++.+
T Consensus 334 lfV~~hgsw~~~~~~~~g~~~~~~~~f-l~~d~-~gR~~dV~v~~DGallv~~D~~~g~i~Rv 394 (399)
T COG2133 334 LFVGAHGSWPVLRLRPDGNYKVVLTGF-LSGDL-GGRPRDVAVAPDGALLVLTDQGDGRILRV 394 (399)
T ss_pred EEEEeecceeEEEeccCCCcceEEEEE-EecCC-CCcccceEECCCCeEEEeecCCCCeEEEe
Confidence 99999888889998888762 111111 11111 156999999999999999553 2344443
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0031 Score=53.55 Aligned_cols=162 Identities=17% Similarity=0.187 Sum_probs=89.5
Q ss_pred CcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 48 SFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
..+.||+.-. |+.+|.- ..++.-+++|+. .- ++....+.++ .-.|++.| +.+|+. +|..
T Consensus 90 ~~FgEGit~~--gd~~y~LTw~egvaf~~d~~-t~------~~lg~~~y~G----eGWgLt~d--~~~Lim--sdGs--- 149 (262)
T COG3823 90 TVFGEGITKL--GDYFYQLTWKEGVAFKYDAD-TL------EELGRFSYEG----EGWGLTSD--DKNLIM--SDGS--- 149 (262)
T ss_pred cccccceeec--cceEEEEEeccceeEEEChH-Hh------hhhcccccCC----cceeeecC--CcceEe--eCCc---
Confidence 3455666654 3344444 445666777642 21 1100111222 23578776 566887 4432
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCcccccc--cccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKE--WYKN 203 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~--~~~~ 203 (335)
+.+..-||++-.....+.....+.+....|.+.. =||.+|..=+.+.+|.|++|+. +....++-..+.... ....
T Consensus 150 -atL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~ 227 (262)
T COG3823 150 -ATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSN 227 (262)
T ss_pred -eEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccc
Confidence 4577778876543322222222333566777765 4799999888999999999984 444433321111100 0111
Q ss_pred ccccCeEEEccCC-eEEEEECCCCEEEEE
Q 039428 204 VFGLNGIVYHPDG-FLIVIHMCSGNLFKI 231 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyvad~~~~~v~~~ 231 (335)
..-+||||++|++ ++|++--.=-.++.+
T Consensus 228 ~nvlNGIA~~~~~~r~~iTGK~wp~lfEV 256 (262)
T COG3823 228 DNVLNGIAHDPQQDRFLITGKLWPLLFEV 256 (262)
T ss_pred cccccceeecCcCCeEEEecCcCceeEEE
Confidence 2348999999988 999885433344433
|
|
| >COG3211 PhoX Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.01 Score=57.55 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=42.3
Q ss_pred CCCCCeEEEcCCCcEEEEecCCC--------eEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe--CCeEEEEec
Q 039428 251 LSLGDGLALLSPTKLVVAGNPYP--------SARLVESSDGWETASVVAKFNGPTHRVATAATVK--DGRVYLSHL 316 (335)
Q Consensus 251 ~~~pdGia~d~~g~l~va~~~~~--------~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~~ 316 (335)
|..||+|++|+.|+||++..+++ ++.-+.. .+.++.++...+..|...--|+.+|. +.++||+-+
T Consensus 499 f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~-~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~vQ 573 (616)
T COG3211 499 FNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLT-PDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNVQ 573 (616)
T ss_pred ccCCCceEECCCCCEEEEecCCCCccCccccccccccc-CCCccceeeeeccCCCcceeecceeCCCCceEEEEec
Confidence 67799999999999999943322 1221211 23345566566667765555788884 678999543
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.01 Score=58.99 Aligned_cols=193 Identities=17% Similarity=0.153 Sum_probs=121.9
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
-|..+.|+.+.++.+..+.++.-|.. +... . .+...+.. .....+.|.| .|..|++ + +.++..++|
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl-~t~s-----~---~V~y~GH~-~PVwdV~F~P-~GyYFat-a--s~D~tArLW 520 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSL-DTWS-----C---LVIYKGHL-APVWDVQFAP-RGYYFAT-A--SHDQTARLW 520 (707)
T ss_pred eeeeecccccceeeccCCcceeeeec-ccce-----e---EEEecCCC-cceeeEEecC-CceEEEe-c--CCCceeeee
Confidence 58889999877766676777777764 2321 1 11122211 1235677887 6766663 3 334445666
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
..|..--..++..+ .+-..-+.|.|+.+...+.+...+|..+|.- |..++++.. ...-...+
T Consensus 521 s~d~~~PlRifagh-------lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G----------H~~~V~al 583 (707)
T KOG0263|consen 521 STDHNKPLRIFAGH-------LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG----------HKGPVTAL 583 (707)
T ss_pred ecccCCchhhhccc-------ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC----------CCCceEEE
Confidence 66642111122222 2333448899999888888888888888864 666665421 11226899
Q ss_pred EEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 211 VYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 211 a~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
+++|+|+-.++-...+.|...|+.++. .+..+ .+ + -+..+-+.+..+|++.+++.+.+++++.+.
T Consensus 584 ~~Sp~Gr~LaSg~ed~~I~iWDl~~~~-~v~~l--~~-H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 584 AFSPCGRYLASGDEDGLIKIWDLANGS-LVKQL--KG-H-TGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred EEcCCCceEeecccCCcEEEEEcCCCc-chhhh--hc-c-cCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 999999777777788899999998863 22212 12 1 134678999999999999877788888764
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.055 Score=50.68 Aligned_cols=189 Identities=10% Similarity=0.097 Sum_probs=113.1
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
.++..++.|..++....++....-|..++. .+. ..+.. ..+-.-+..+++| +|.|+.+. ... +.|.
T Consensus 307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~----~lt---~vs~~-~s~v~~ts~~fHp-DgLifgtg--t~d---~~vk 372 (506)
T KOG0289|consen 307 TGLSLHPTGEYLLSASNDGTWAFSDISSGS----QLT---VVSDE-TSDVEYTSAAFHP-DGLIFGTG--TPD---GVVK 372 (506)
T ss_pred eeeeeccCCcEEEEecCCceEEEEEccCCc----EEE---EEeec-cccceeEEeeEcC-CceEEecc--CCC---ceEE
Confidence 577888888866665666666666644443 111 22221 1112356788997 89999852 222 4588
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIV 211 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia 211 (335)
.||++++... ..+++. -.....++|..+|...++....+.|..+|..--. .+ +.|..+ .+...+.+.
T Consensus 373 iwdlks~~~~--a~Fpgh---t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--n~--kt~~l~----~~~~v~s~~ 439 (506)
T KOG0289|consen 373 IWDLKSQTNV--AKFPGH---TGPVKAISFSENGYWLATAADDGSVKLWDLRKLK--NF--KTIQLD----EKKEVNSLS 439 (506)
T ss_pred EEEcCCcccc--ccCCCC---CCceeEEEeccCceEEEEEecCCeEEEEEehhhc--cc--ceeecc----ccccceeEE
Confidence 9999877543 334321 2344679999999888887888889999875211 11 122221 234589999
Q ss_pred EccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 212 YHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 212 ~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
||+.|...+.-..+=+||.++-... ..+.+...... .+..+|+.+.....+..+..
T Consensus 440 fD~SGt~L~~~g~~l~Vy~~~k~~k--~W~~~~~~~~~-sg~st~v~Fg~~aq~l~s~s 495 (506)
T KOG0289|consen 440 FDQSGTYLGIAGSDLQVYICKKKTK--SWTEIKELADH-SGLSTGVRFGEHAQYLASTS 495 (506)
T ss_pred EcCCCCeEEeecceeEEEEEecccc--cceeeehhhhc-ccccceeeecccceEEeecc
Confidence 9999944444455567888876554 44444322212 23468888876555444433
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.021 Score=53.08 Aligned_cols=114 Identities=16% Similarity=0.236 Sum_probs=67.6
Q ss_pred CCCCCceeECCC-CcEEE-EeCCC----CeEEEEccCC-----cEEEEecCCcccccc---ccccccccCeEEEccCCeE
Q 039428 153 KSTADDIAVDAE-GNAYV-TDVVS----SKIWKVGVEG-----QLLSIIRSPLFTAKE---WYKNVFGLNGIVYHPDGFL 218 (335)
Q Consensus 153 ~~~p~~~~vd~~-G~lyV-~d~~~----~~I~~~d~~g-----~~~~~~~~~~~~~~~---~~~~~~~p~Gia~~~dg~L 218 (335)
+....+++.+++ |++|+ +|... .+++.++.+. ......+...+..+. ......-+.||++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 667788999954 54333 34332 2366665443 111111111111111 0112235889999888999
Q ss_pred EEEECCC------CEEEEEeCCCCceeEEEEeccCC-----------cCCCCCCeEEEcCCCc-EEEE
Q 039428 219 IVIHMCS------GNLFKIDIRKEEEEVKLIELRGG-----------SSLSLGDGLALLSPTK-LVVA 268 (335)
Q Consensus 219 yvad~~~------~~v~~~d~~~~~~~~~~~~~~g~-----------~~~~~pdGia~d~~g~-l~va 268 (335)
||++... .+|++++.++. ..+.+.++.. ..-.+..||++.++|+ ||++
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~G~--~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLDGR--VIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCCCc--ccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 9999999 99999999865 3333322210 1124679999999997 8888
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0065 Score=57.82 Aligned_cols=203 Identities=13% Similarity=0.173 Sum_probs=121.6
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCC-------cCCC--CcceEEEeCCCCeEEEE
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDD-------VVGN--ATMGIAVDRPRNRLLVA 118 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~-------~~~~--~p~Gi~~d~~~g~l~v~ 118 (335)
...-.++.|++.|+.+++-..+.+.-.+| .+|. ++++ +..... ..|+ ..+.-.++|.+...|.+
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~D-RdG~---~~~e---~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT 286 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLD-RDGF---EIVE---FSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLT 286 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEc-cCCc---eeee---eeccchhhhhhhccCCceeeeeccccccCcccceEE
Confidence 33457889999999888876677777777 3554 1122 321111 0111 12444567766667765
Q ss_pred EecCCCCccceEEEEECCCC--eEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccc
Q 039428 119 FTDVLGNKYSALAAYDLSTW--KRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFT 196 (335)
Q Consensus 119 ~~D~~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~ 196 (335)
+++. +.+..||.... ++....+. ..+..--.|.-.++++||+++.+....|.|..++..+..+. +.+.
T Consensus 287 ~s~D-----gtlRiWdv~~~k~q~qVik~k-~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~----p~~~ 356 (641)
T KOG0772|consen 287 CSYD-----GTLRIWDVNNTKSQLQVIKTK-PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR----PVMK 356 (641)
T ss_pred ecCC-----CcEEEEecCCchhheeEEeec-cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc----cceE
Confidence 4432 35778887532 22211221 11111355677889999999888888999999997554433 2222
Q ss_pred cccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEE-eccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 197 AKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLI-ELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 197 ~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~-~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
-......+.....|+|++||+.+.+-...+.+...|++..+..+.+. .+.. .+. -..++|.|+..|++++.
T Consensus 357 vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t--~~~-~tdc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 357 VKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT--PFP-GTDCCFSPDDKLILTGT 428 (641)
T ss_pred eeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCc--cCC-CCccccCCCceEEEecc
Confidence 11111123357899999999888888889999888988753122222 1211 122 24688899999999954
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.033 Score=49.69 Aligned_cols=153 Identities=13% Similarity=0.084 Sum_probs=84.0
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEe----CCCCe
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTD----VVSSK 176 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d----~~~~~ 176 (335)
+.+||+++|...+-.+. +...+ ..-++||+.+.+......- ... -.+--.-.+.+||+ +|.|+ ...|.
T Consensus 69 R~Hgi~~~p~~~ravaf-ARrPG---tf~~vfD~~~~~~pv~~~s--~~~-RHfyGHGvfs~dG~~LYATEndfd~~rGV 141 (366)
T COG3490 69 RGHGIAFHPALPRAVAF-ARRPG---TFAMVFDPNGAQEPVTLVS--QEG-RHFYGHGVFSPDGRLLYATENDFDPNRGV 141 (366)
T ss_pred ccCCeecCCCCcceEEE-EecCC---ceEEEECCCCCcCcEEEec--ccC-ceeecccccCCCCcEEEeecCCCCCCCce
Confidence 55788888755544332 32222 3477889987754422221 111 34444577899997 77764 34677
Q ss_pred EEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECC--CC---------------EEEEEeCCCCce
Q 039428 177 IWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMC--SG---------------NLFKIDIRKEEE 238 (335)
Q Consensus 177 I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~--~~---------------~v~~~d~~~~~~ 238 (335)
|-++|.+-++.++ ..|. .-+.+|+-+.+.+|| .|.+++.+ .+ ++.-+|...+.
T Consensus 142 iGvYd~r~~fqrv---gE~~-----t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~- 212 (366)
T COG3490 142 IGVYDAREGFQRV---GEFS-----THGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGN- 212 (366)
T ss_pred EEEEeccccccee---cccc-----cCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccc-
Confidence 7777776555442 2232 245789999999999 55566542 11 22222311110
Q ss_pred eEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 239 EVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 239 ~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
.++...++.+.......-+++++||++|..+.
T Consensus 213 liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 213 LIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred hhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 11111111100012357899999999999954
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.028 Score=53.20 Aligned_cols=120 Identities=11% Similarity=0.190 Sum_probs=76.5
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
.|-+||.++++...... +++....+.++++|...|....+..||++|.+....+.+...... -..
T Consensus 383 ~l~iyd~~~~e~kr~e~------~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~---------lIt 447 (668)
T COG4946 383 KLGIYDKDGGEVKRIEK------DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG---------LIT 447 (668)
T ss_pred eEEEEecCCceEEEeeC------CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccc---------eeE
Confidence 59999999988663221 156667799999998555556788999999886666655432221 256
Q ss_pred eEEEccCC-eEEEEECC---CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEe
Q 039428 209 GIVYHPDG-FLIVIHMC---SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAG 269 (335)
Q Consensus 209 Gia~~~dg-~Lyvad~~---~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~ 269 (335)
+++++|++ ++-++-.. ...|..+|..++ ....+..+. +.-..-|+|++|+ ||.-.
T Consensus 448 df~~~~nsr~iAYafP~gy~tq~Iklydm~~~--Kiy~vTT~t----a~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 448 DFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG--KIYDVTTPT----AYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEEEcCCceeEEEecCcceeeeeEEEEecCCC--eEEEecCCc----ccccCcccCCCCcEEEEEe
Confidence 78888877 44333322 345777888887 333333222 2233468899985 55553
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.036 Score=49.58 Aligned_cols=196 Identities=16% Similarity=0.118 Sum_probs=124.5
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-..+.++|+|..|..+..+..|+-|.. .+.. + ..+. ..+.. +...++...+++..|+-+..|. .
T Consensus 49 eI~~~~F~P~gs~~aSgG~Dr~I~LWnv-~gdc-----e-N~~~-lkgHs-gAVM~l~~~~d~s~i~S~gtDk------~ 113 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSDRAIVLWNV-YGDC-----E-NFWV-LKGHS-GAVMELHGMRDGSHILSCGTDK------T 113 (338)
T ss_pred eEEEEEECCCCCeEeecCCcceEEEEec-cccc-----c-ceee-ecccc-ceeEeeeeccCCCEEEEecCCc------e
Confidence 3467899999988777777889998873 3431 1 1121 12211 3467888876556666654443 6
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
|+.||.++|+....-.. . -...|-+...+.|- +..+.+..+++..+|...+... ..+. ......
T Consensus 114 v~~wD~~tG~~~rk~k~----h-~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~----~t~~------~kyqlt 178 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKG----H-TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI----KTFE------NKYQLT 178 (338)
T ss_pred EEEEecccceeeehhcc----c-cceeeecCccccCCeEEEecCCCceEEEEeecccchh----hccc------cceeEE
Confidence 99999999977633221 1 34555566555574 5556677888888887654322 1221 123467
Q ss_pred eEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 209 GIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 209 Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.++|..++ +++ +-.-++.|...|+..+. ...... |.. ....||.+.++|....++.+++.+++.+..
T Consensus 179 Av~f~d~s~qv~-sggIdn~ikvWd~r~~d-~~~~ls--Gh~--DtIt~lsls~~gs~llsnsMd~tvrvwd~r 246 (338)
T KOG0265|consen 179 AVGFKDTSDQVI-SGGIDNDIKVWDLRKND-GLYTLS--GHA--DTITGLSLSRYGSFLLSNSMDNTVRVWDVR 246 (338)
T ss_pred EEEeccccccee-eccccCceeeeccccCc-ceEEee--ccc--CceeeEEeccCCCccccccccceEEEEEec
Confidence 78888777 444 44456778888887652 333333 422 336899999999988998888888887754
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.16 Score=49.86 Aligned_cols=180 Identities=11% Similarity=0.056 Sum_probs=101.0
Q ss_pred ceeeeEEcCCC-CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVG-RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g-~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
....++|+|++ ++++++..++.|..||..++.. +. .+.... .....+++++ ++.++++... + .
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~----~~---~l~~h~---~~V~sla~sp-dG~lLatgs~---D--g 190 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA----VE---VIKCHS---DQITSLEWNL-DGSLLCTTSK---D--K 190 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE----EE---EEcCCC---CceEEEEEEC-CCCEEEEecC---C--C
Confidence 35678999986 5666667899999999654431 11 221111 2467899997 6666654221 1 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEe----CCCCeEEEEccCCc--EEEEecCCccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTD----VVSSKIWKVGVEGQ--LLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d----~~~~~I~~~d~~g~--~~~~~~~~~~~~~~~~~ 202 (335)
.|..||+++++....... .. ......+.+.++++.+++- +..+.|..+|.... ...... ..
T Consensus 191 ~IrIwD~rsg~~v~tl~~--H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~---~d------ 257 (493)
T PTZ00421 191 KLNIIDPRDGTIVSSVEA--HA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD---LD------ 257 (493)
T ss_pred EEEEEECCCCcEEEEEec--CC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec---cC------
Confidence 699999998876533221 10 1222345566665555542 23567888887531 111110 00
Q ss_pred cccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCC
Q 039428 203 NVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSP 262 (335)
Q Consensus 203 ~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~ 262 (335)
......-..+++|+ .||++..+.+.|..+|+..++ ......... -..-.|+++.+.
T Consensus 258 ~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~-~~~~~~~~s---~~~~~g~~~~pk 314 (493)
T PTZ00421 258 QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER-LTFCSSYSS---VEPHKGLCMMPK 314 (493)
T ss_pred CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc-eEEEeeccC---CCCCcceEeccc
Confidence 01112334678888 566666678889999998763 222222211 111367777765
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.062 Score=50.49 Aligned_cols=145 Identities=20% Similarity=0.276 Sum_probs=76.7
Q ss_pred CcceEEEe--CCCCeEEEEEecCCCCccceEEEE-ECCCCeEE--EEeecCCCccCCCCCCceeECCC-CcEEEEeCCCC
Q 039428 102 ATMGIAVD--RPRNRLLVAFTDVLGNKYSALAAY-DLSTWKRL--FLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSS 175 (335)
Q Consensus 102 ~p~Gi~~d--~~~g~l~v~~~D~~~~~~~~v~~~-d~~~~~~~--~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~ 175 (335)
.+.|+++- +.+|.+|+...+..+. -.-+++ +...+.+. ....+.. ...+.++++|.. |.+|+++.. .
T Consensus 157 e~yGlcly~~~~~g~~ya~v~~k~G~--~~Qy~L~~~~~g~v~~~lVR~f~~----~sQ~EGCVVDDe~g~LYvgEE~-~ 229 (381)
T PF02333_consen 157 EPYGLCLYRSPSTGALYAFVNGKDGR--VEQYELTDDGDGKVSATLVREFKV----GSQPEGCVVDDETGRLYVGEED-V 229 (381)
T ss_dssp SEEEEEEEE-TTT--EEEEEEETTSE--EEEEEEEE-TTSSEEEEEEEEEE-----SS-EEEEEEETTTTEEEEEETT-T
T ss_pred cceeeEEeecCCCCcEEEEEecCCce--EEEEEEEeCCCCcEeeEEEEEecC----CCcceEEEEecccCCEEEecCc-c
Confidence 47889874 4467888876554332 112222 22334322 1222211 346889999986 899999876 5
Q ss_pred eEEEEccC---CcEEEEe---cCCccccccccccccccCeEEEcc--C--CeEEEEECCCCEEEEEeCCCCceeEEEEec
Q 039428 176 KIWKVGVE---GQLLSII---RSPLFTAKEWYKNVFGLNGIVYHP--D--GFLIVIHMCSGNLFKIDIRKEEEEVKLIEL 245 (335)
Q Consensus 176 ~I~~~d~~---g~~~~~~---~~~~~~~~~~~~~~~~p~Gia~~~--d--g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~ 245 (335)
.||+++.+ +...+.+ ....+. .-..||++-. + |+|++++.++++..+++..+....+..|.+
T Consensus 230 GIW~y~Aep~~~~~~~~v~~~~g~~l~--------aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~i 301 (381)
T PF02333_consen 230 GIWRYDAEPEGGNDRTLVASADGDGLV--------ADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFRI 301 (381)
T ss_dssp EEEEEESSCCC-S--EEEEEBSSSSB---------S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEEE
T ss_pred EEEEEecCCCCCCcceeeecccccccc--------cCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEEe
Confidence 79999976 2222222 111222 2378999853 3 489999999999999998874213344433
Q ss_pred cCCc---CCCCCCeEEEcC
Q 039428 246 RGGS---SLSLGDGLALLS 261 (335)
Q Consensus 246 ~g~~---~~~~pdGia~d~ 261 (335)
.... .....||+++.+
T Consensus 302 ~~~~~idg~~eTDG~~v~s 320 (381)
T PF02333_consen 302 GDGGGIDGVSETDGIEVVS 320 (381)
T ss_dssp E--SSS----S---EEEE-
T ss_pred ccCCCccccccCCcceEEc
Confidence 2100 123467777754
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.07 Score=52.44 Aligned_cols=128 Identities=11% Similarity=-0.006 Sum_probs=71.8
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEe-----------------CCCCeEEEEccC-CcEEEE
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTD-----------------VVSSKIWKVGVE-GQLLSI 189 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d-----------------~~~~~I~~~d~~-g~~~~~ 189 (335)
+.++.+|+++|++++..+.. -.+++.++ +.+|+.. ...+.|+.+|.. |+.+..
T Consensus 311 G~l~ald~~tG~~~W~~~~~--------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~ 381 (488)
T cd00216 311 GFFYVLDRTTGKLISARPEV--------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWE 381 (488)
T ss_pred ceEEEEECCCCcEeeEeEee--------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeE
Confidence 35999999999998765432 11245555 6777742 235789999975 444331
Q ss_pred ecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEe
Q 039428 190 IRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAG 269 (335)
Q Consensus 190 ~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~ 269 (335)
............+.......+++. ++.||+.+ .+++|+.+|.++++ .+...++.+ .....| +++..+|++||+.
T Consensus 382 ~~~~~~~~~~~~g~~~~~~~~~~~-g~~v~~g~-~dG~l~ald~~tG~-~lW~~~~~~-~~~a~P--~~~~~~g~~yv~~ 455 (488)
T cd00216 382 KREGTIRDSWNIGFPHWGGSLATA-GNLVFAGA-ADGYFRAFDATTGK-ELWKFRTPS-GIQATP--MTYEVNGKQYVGV 455 (488)
T ss_pred eeCCccccccccCCcccCcceEec-CCeEEEEC-CCCeEEEEECCCCc-eeeEEECCC-CceEcC--EEEEeCCEEEEEE
Confidence 111000000000000001123333 56888877 68899999998875 444455533 212334 5556678999994
Q ss_pred c
Q 039428 270 N 270 (335)
Q Consensus 270 ~ 270 (335)
.
T Consensus 456 ~ 456 (488)
T cd00216 456 M 456 (488)
T ss_pred E
Confidence 4
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.12 Score=46.66 Aligned_cols=157 Identities=16% Similarity=0.181 Sum_probs=99.9
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEE-ecCCCCccceE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAF-TDVLGNKYSAL 130 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~-~D~~~~~~~~v 130 (335)
.+++|+++|+.++++..+..|..||...|. .+.+ +.++. ...+..++|++.+..|+. .+.. ..+
T Consensus 69 ~sl~WS~dgr~LltsS~D~si~lwDl~~gs----~l~r---irf~s----pv~~~q~hp~k~n~~va~~~~~s----p~v 133 (405)
T KOG1273|consen 69 TSLCWSRDGRKLLTSSRDWSIKLWDLLKGS----PLKR---IRFDS----PVWGAQWHPRKRNKCVATIMEES----PVV 133 (405)
T ss_pred eEEEecCCCCEeeeecCCceeEEEeccCCC----ceeE---EEccC----ccceeeeccccCCeEEEEEecCC----cEE
Confidence 799999999999999889999999976665 1332 23332 235777777666666643 2221 235
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeE
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
..++.....++ +...+++-...+.-..+|+.|+..++....|.+.+++.+..... .+|... .......|
T Consensus 134 i~~s~~~h~~L---p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~v----as~rit----s~~~IK~I 202 (405)
T KOG1273|consen 134 IDFSDPKHSVL---PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECV----ASFRIT----SVQAIKQI 202 (405)
T ss_pred EEecCCceeec---cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheee----eeeeec----hheeeeEE
Confidence 55543211121 12222221233444678999998888889999999998865433 122210 11236678
Q ss_pred EEccCCeEEEEECCCCEEEEEeCC
Q 039428 211 VYHPDGFLIVIHMCSGNLFKIDIR 234 (335)
Q Consensus 211 a~~~dg~Lyvad~~~~~v~~~d~~ 234 (335)
-++..|.-++.++..+.|..++..
T Consensus 203 ~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 203 IVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred EEeccCcEEEEecCCceEEEEehh
Confidence 889889777888888888777765
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.14 Score=46.96 Aligned_cols=208 Identities=18% Similarity=0.141 Sum_probs=113.6
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-+=+.|+|.+++++....+|.|+.|..+.+. .. ++.+.+.. ..+-=.+-|++.++.....| +.|
T Consensus 151 ieWl~WHp~a~illAG~~DGsvWmw~ip~~~-----~~--kv~~Gh~~---~ct~G~f~pdGKr~~tgy~d------gti 214 (399)
T KOG0296|consen 151 IEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-----LC--KVMSGHNS---PCTCGEFIPDGKRILTGYDD------GTI 214 (399)
T ss_pred eEEEEecccccEEEeecCCCcEEEEECCCcc-----ee--eEecCCCC---CcccccccCCCceEEEEecC------ceE
Confidence 3556889999999988889999999876543 12 24433321 22233445556677664332 469
Q ss_pred EEEECCCCeEEEEeecC----CCccCCCCCCc--eeECCCCcEEEEeCCCCeEEEEccCCcEEEE------------ecC
Q 039428 131 AAYDLSTWKRLFLTQLS----GKSEEKSTADD--IAVDAEGNAYVTDVVSSKIWKVGVEGQLLSI------------IRS 192 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~----~~~~~~~~p~~--~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~------------~~~ 192 (335)
.+||+.+++.+...... .+.-..+.-.- ++...+|.+++.....++|...+........ +..
T Consensus 215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ 294 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS 294 (399)
T ss_pred EEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc
Confidence 99999999887554411 11111122112 2333567888887777777766553111000 000
Q ss_pred ----Cccccc---c-----------ccccc---cccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCC
Q 039428 193 ----PLFTAK---E-----------WYKNV---FGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSL 251 (335)
Q Consensus 193 ----~~~~~~---~-----------~~~~~---~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~ 251 (335)
+.++-. + ..... .+..-+.|.++.+|| +-+.++.|+.+|...++ .+... .| +.
T Consensus 295 ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~-t~c~~g~v~~wDaRtG~-l~~~y--~G-H~- 368 (399)
T KOG0296|consen 295 SSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLL-TACANGKVRQWDARTGQ-LKFTY--TG-HQ- 368 (399)
T ss_pred ccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchhe-eeccCceEEeeeccccc-eEEEE--ec-Cc-
Confidence 000000 0 00000 113334555433444 45578889999988873 22233 24 31
Q ss_pred CCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 252 SLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 252 ~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
.....+++.+++++.|+-...+..+|+..
T Consensus 369 ~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 369 MGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred hheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 23567888898888888665566666654
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.12 Score=45.69 Aligned_cols=197 Identities=12% Similarity=0.035 Sum_probs=120.7
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-+++.+|.+...+++...+.++.-||.++|+ .+. .+ ..+ .....+.++. .|++.++..|..-.....
T Consensus 54 avW~~Did~~s~~liTGSAD~t~kLWDv~tGk----~la--~~-k~~----~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~ 121 (327)
T KOG0643|consen 54 AVWCCDIDWDSKHLITGSADQTAKLWDVETGK----QLA--TW-KTN----SPVKRVDFSF-GGNLILASTDKQMGYTCF 121 (327)
T ss_pred eEEEEEecCCcceeeeccccceeEEEEcCCCc----EEE--Ee-ecC----CeeEEEeecc-CCcEEEEEehhhcCcceE
Confidence 45778888888887777778888888877776 121 12 122 2456888886 676666656644222257
Q ss_pred EEEEECC-------CCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccc
Q 039428 130 LAAYDLS-------TWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 130 v~~~d~~-------~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~ 202 (335)
|..||.+ +.+....+.- + ...++-+.-++-|...|+.-..|.|.++|....... ..+....
T Consensus 122 v~~fdi~~~~~~~~s~ep~~kI~t--~---~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~-v~s~~~h------ 189 (327)
T KOG0643|consen 122 VSVFDIRDDSSDIDSEEPYLKIPT--P---DSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL-VDSDEEH------ 189 (327)
T ss_pred EEEEEccCChhhhcccCceEEecC--C---ccceeeeeecccCCEEEEecCCCcEEEEEcccCcee-eechhhh------
Confidence 8888876 2232222221 1 245666777888888888888999999998743221 1111111
Q ss_pred cccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEE
Q 039428 203 NVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARL 277 (335)
Q Consensus 203 ~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v 277 (335)
....|.|.+++|...|++.+...+-..+|...-. ....+... .+ .+-.++.|-..-.|...+-+..-|
T Consensus 190 -~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~-v~Kty~te--~P---vN~aaisP~~d~VilgGGqeA~dV 257 (327)
T KOG0643|consen 190 -SSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE-VLKTYTTE--RP---VNTAAISPLLDHVILGGGQEAMDV 257 (327)
T ss_pred -ccccccccccCCcceEEecccCccceeeecccee-eEEEeeec--cc---ccceecccccceEEecCCceeeee
Confidence 1258999999999999999888877778877642 22333221 21 245666666554555443233333
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.13 Score=46.54 Aligned_cols=212 Identities=13% Similarity=0.056 Sum_probs=118.2
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEE--CC-CCCCCcceeeeeEEeecCC--cCC-CCcceEEEeCCCCeEEEEEecC
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVL--VP-DEYSPGTVLEEVKLVKEDD--VVG-NATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d--~~-~g~~~~~v~~~~~~~~~~~--~~~-~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
.|.-+++.||-.-+++. ...++|+++- .. +|.++. .++.... +.. ....-|.+.-.++..|+.++..
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~------~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~ 207 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSH------HFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASL 207 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCc------ccccccccccchhcccceEEEeecCCceEEEEecC
Confidence 58899999998888888 4456665553 11 122210 1111110 000 1111122222356677754432
Q ss_pred CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc----cCCcEEEEecCCccccc
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG----VEGQLLSIIRSPLFTAK 198 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d----~~g~~~~~~~~~~~~~~ 198 (335)
. ..|..|+++ |+++..++.+ ...-.+.++.|+|++..+...+.-|.++. .+|.+.++-. .|.-
T Consensus 208 d----t~i~lw~lk-Gq~L~~idtn-----q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~r--vf~L- 274 (420)
T KOG2096|consen 208 D----TKICLWDLK-GQLLQSIDTN-----QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKR--VFSL- 274 (420)
T ss_pred C----CcEEEEecC-Cceeeeeccc-----cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhh--hhee-
Confidence 2 359999998 6666555442 23445799999999888777766666544 4665543211 1211
Q ss_pred cccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCC----c--eeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCC
Q 039428 199 EWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE----E--EEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPY 272 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~----~--~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~ 272 (335)
.+........||+++..-.++-+.+|++..+|.+=. + ..++....+-...-..|--+++.|+|.++.+..+
T Consensus 275 --kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g- 351 (420)
T KOG2096|consen 275 --KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG- 351 (420)
T ss_pred --ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-
Confidence 112334778899988866677777887766666532 1 0111111100000145778999999987777664
Q ss_pred CeEEEEEcCCC
Q 039428 273 PSARLVESSDG 283 (335)
Q Consensus 273 ~~~~v~~~~~~ 283 (335)
..+.++...++
T Consensus 352 s~l~~~~se~g 362 (420)
T KOG2096|consen 352 SDLKVFASEDG 362 (420)
T ss_pred CceEEEEcccC
Confidence 34777877654
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.19 Score=46.85 Aligned_cols=166 Identities=16% Similarity=0.116 Sum_probs=79.6
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC-----------CeEEEE
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS-----------SKIWKV 180 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~-----------~~I~~~ 180 (335)
++.||+...-......+.+.+||+++.+-...........+..+-...++--++.+||..... ..|+++
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 688999632111111246999999887544222221100001111222233457899964321 357888
Q ss_pred ccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEEC-------------CCCEEEEEeCCCCceeEEEEeccC
Q 039428 181 GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHM-------------CSGNLFKIDIRKEEEEVKLIELRG 247 (335)
Q Consensus 181 d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~-------------~~~~v~~~d~~~~~~~~~~~~~~g 247 (335)
|++...-..+.. .. ..+....-.+++.. ++.||+.-. ..+.|+++|+... ....+...+
T Consensus 165 d~~~~~W~~l~~--~~---~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~--~W~~~~~~g 236 (341)
T PLN02153 165 NIADGKWVQLPD--PG---ENFEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG--KWTEVETTG 236 (341)
T ss_pred ECCCCeEeeCCC--CC---CCCCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEEEEcCCC--cEEeccccC
Confidence 887544322211 00 00011112344443 678887421 1357999999887 455443222
Q ss_pred CcCCCCC-CeEEEcCCCcEEEEecC--------------CCeEEEEEcCCC-cEE
Q 039428 248 GSSLSLG-DGLALLSPTKLVVAGNP--------------YPSARLVESSDG-WET 286 (335)
Q Consensus 248 ~~~~~~p-dGia~d~~g~l~va~~~--------------~~~~~v~~~~~~-~~~ 286 (335)
..+.... .++++ -++.|||.+.. .+.+.+++...+ |+.
T Consensus 237 ~~P~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~ 290 (341)
T PLN02153 237 AKPSARSVFAHAV-VGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEK 290 (341)
T ss_pred CCCCCcceeeeEE-ECCEEEEECcccCCccccccccccccccEEEEEcCccEEEe
Confidence 1101111 22333 34789998442 135666766544 653
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.21 Score=49.85 Aligned_cols=180 Identities=11% Similarity=0.036 Sum_probs=100.0
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
...+++|+|++..++++ ..++.|..||..++.. .. .+..+ .....+.+++ +|.++++.... .
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~----~~---~i~~~----~~V~Slswsp-dG~lLat~s~D-----~ 189 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR----AF---QINMP----KKLSSLKWNI-KGNLLSGTCVG-----K 189 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE----EE---EEecC----CcEEEEEECC-CCCEEEEEecC-----C
Confidence 45789999998766555 7789999999654431 11 11122 2467899997 67777753311 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCC-C-CCCceeECCCCcEEEEeCCC----CeEEEEccC--CcEEEEecCCccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEK-S-TADDIAVDAEGNAYVTDVVS----SKIWKVGVE--GQLLSIIRSPLFTAKEW 200 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~-~-~p~~~~vd~~G~lyV~d~~~----~~I~~~d~~--g~~~~~~~~~~~~~~~~ 200 (335)
.|..||+++++....... ..... . ..+-..+.+++..+++-... ..|..+|.. ++.+.... ..
T Consensus 190 ~IrIwD~Rsg~~i~tl~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~---ld---- 260 (568)
T PTZ00420 190 HMHIIDPRKQEIASSFHI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS---ID---- 260 (568)
T ss_pred EEEEEECCCCcEEEEEec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE---ec----
Confidence 599999998876533221 10000 0 00111234676666653332 368888866 23322111 00
Q ss_pred cccccccCe--EEEccC-CeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC
Q 039428 201 YKNVFGLNG--IVYHPD-GFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT 263 (335)
Q Consensus 201 ~~~~~~p~G--ia~~~d-g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g 263 (335)
..+.. ..++++ |.+|++-.+++.|+.++...+ ....+.... . ..--.|+++-|..
T Consensus 261 ----~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~--~~~~l~~~~-s-~~p~~g~~f~Pkr 318 (568)
T PTZ00420 261 ----NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG--SIRKVNEYK-S-CSPFRSFGFLPKQ 318 (568)
T ss_pred ----CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC--cEEeecccc-c-CCCccceEEcccc
Confidence 01222 244554 689999999999999998765 333332110 0 0112577887763
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.12 Score=47.88 Aligned_cols=203 Identities=15% Similarity=0.156 Sum_probs=112.2
Q ss_pred CCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeC----CCCeEEEEEec
Q 039428 46 SPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDR----PRNRLLVAFTD 121 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~----~~g~l~v~~~D 121 (335)
+-...-.+++|+|||..+.....+|+|..||+..|+- .. +. .++.. .+..+++..| ...+.++. +
T Consensus 155 gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~----~g--~~--l~gH~-K~It~Lawep~hl~p~~r~las-~- 223 (480)
T KOG0271|consen 155 GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ----IG--RA--LRGHK-KWITALAWEPLHLVPPCRRLAS-S- 223 (480)
T ss_pred CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc----cc--cc--ccCcc-cceeEEeecccccCCCccceec-c-
Confidence 3344678999999999877778899999999766651 11 01 11111 2445666543 13454442 1
Q ss_pred CCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccc
Q 039428 122 VLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEW 200 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~ 200 (335)
..+ +.+.+||...+..+.. +.+. -....-+.-..+|-+| +.+...+|.+++.. |+..+.+..
T Consensus 224 -skD--g~vrIWd~~~~~~~~~--lsgH---T~~VTCvrwGG~gliy-SgS~DrtIkvw~a~dG~~~r~lkG-------- 286 (480)
T KOG0271|consen 224 -SKD--GSVRIWDTKLGTCVRT--LSGH---TASVTCVRWGGEGLIY-SGSQDRTIKVWRALDGKLCRELKG-------- 286 (480)
T ss_pred -cCC--CCEEEEEccCceEEEE--eccC---ccceEEEEEcCCceEE-ecCCCceEEEEEccchhHHHhhcc--------
Confidence 122 4599999987765533 2111 1112223333344444 56777888888764 444332211
Q ss_pred cccccccCeEEEc------------------------------------cCCeEEEEECCCCEEEEEeCCCCceeEEEEe
Q 039428 201 YKNVFGLNGIVYH------------------------------------PDGFLIVIHMCSGNLFKIDIRKEEEEVKLIE 244 (335)
Q Consensus 201 ~~~~~~p~Gia~~------------------------------------~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~ 244 (335)
.....|.|+++ ..+...|+-+.+..++..++...+ +.+.
T Consensus 287 --HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k---kpi~ 361 (480)
T KOG0271|consen 287 --HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK---KPIT 361 (480)
T ss_pred --cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc---cchh
Confidence 00112222222 123457888888888888776542 1221
Q ss_pred -ccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 245 -LRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 245 -~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
..| + .....-+.+.||++++.+..-..+++..+-.+|
T Consensus 362 rmtg-H-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG 399 (480)
T KOG0271|consen 362 RMTG-H-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTG 399 (480)
T ss_pred hhhc-h-hhheeeEEECCCccEEEEeecccceeeeeCCCc
Confidence 223 2 244678999999886666444466776665443
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.047 Score=54.42 Aligned_cols=233 Identities=16% Similarity=0.321 Sum_probs=130.8
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCC-C--Ccc-eeeee---------EEeecC--C----cCC--CCcceEEEe
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEY-S--PGT-VLEEV---------KLVKED--D----VVG--NATMGIAVD 109 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~-~--~~~-v~~~~---------~~~~~~--~----~~~--~~p~Gi~~d 109 (335)
-.+..+++++.++..+..+..|++|.....+ . +.. -+.+. ...... + +.| +...|..+.
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 3566788888877777777777777632111 0 000 00000 000000 0 011 345899999
Q ss_pred CCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC--CCeEEEEccCCcEE
Q 039428 110 RPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV--SSKIWKVGVEGQLL 187 (335)
Q Consensus 110 ~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~--~~~I~~~d~~g~~~ 187 (335)
| +.++.+.++ .+ ..+..|.+++..-...... . ....+++.|.|.|..|+|-+. +.++|-.|-. ..+
T Consensus 461 P-d~rfLlScS---ED--~svRLWsl~t~s~~V~y~G----H-~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-~Pl 528 (707)
T KOG0263|consen 461 P-DRRFLLSCS---ED--SSVRLWSLDTWSCLVIYKG----H-LAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-KPL 528 (707)
T ss_pred c-cccceeecc---CC--cceeeeecccceeEEEecC----C-CcceeeEEecCCceEEEecCCCceeeeeecccC-Cch
Confidence 8 555655322 22 2355566655433322211 1 234589999999976666554 3456655542 233
Q ss_pred EEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEE
Q 039428 188 SIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVV 267 (335)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~v 267 (335)
+++ .. ...-.+.+.|.|..+...+.+....+...|...+. .+++|. | + -.....+++.|.|+..+
T Consensus 529 Rif-----ag-----hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-~VRiF~--G-H-~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 529 RIF-----AG-----HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-SVRIFT--G-H-KGPVTALAFSPCGRYLA 593 (707)
T ss_pred hhh-----cc-----cccccceEEECCcccccccCCCCceEEEEEcCCCc-EEEEec--C-C-CCceEEEEEcCCCceEe
Confidence 322 21 12336789999988666677777888888887764 667774 3 2 13357899999999777
Q ss_pred EecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe-CCeEEEEe
Q 039428 268 AGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK-DGRVYLSH 315 (335)
Q Consensus 268 a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~-~g~lyV~~ 315 (335)
++...+.+.+.+...+ +.+..+.+. .....+++|. +|.+.|+.
T Consensus 594 Sg~ed~~I~iWDl~~~----~~v~~l~~H-t~ti~SlsFS~dg~vLasg 637 (707)
T KOG0263|consen 594 SGDEDGLIKIWDLANG----SLVKQLKGH-TGTIYSLSFSRDGNVLASG 637 (707)
T ss_pred ecccCCcEEEEEcCCC----cchhhhhcc-cCceeEEEEecCCCEEEec
Confidence 7665677888887654 333333222 1223567774 66666643
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.057 Score=54.38 Aligned_cols=196 Identities=14% Similarity=0.134 Sum_probs=116.7
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.....++++.=||.-+++...|.|-+++.+.|- ....+...+. ......|+++|. .+++.|+ ++..|
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi------~r~sf~~~~a-h~~~V~gla~D~-~n~~~vs-a~~~G---- 515 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI------HRKSFGDSPA-HKGEVTGLAVDG-TNRLLVS-AGADG---- 515 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCe------eecccccCcc-ccCceeEEEecC-CCceEEE-ccCcc----
Confidence 345678888889988888889999999876553 1112321122 224568999995 7888775 34433
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
-+.-||...+.+.....+. ..+..+.-.+.-.+++..-..-.|..+|....... ..|.. .....|
T Consensus 516 ilkfw~f~~k~l~~~l~l~------~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv----R~f~g-----h~nrit 580 (910)
T KOG1539|consen 516 ILKFWDFKKKVLKKSLRLG------SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV----REFWG-----HGNRIT 580 (910)
T ss_pred eEEEEecCCcceeeeeccC------CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh----HHhhc-----ccccee
Confidence 3777888776655444441 22334444444334444344557777776644322 12221 223488
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE-ecCCCeEEEE
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA-GNPYPSARLV 278 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va-~~~~~~~~v~ 278 (335)
.++|+|||+-.++.+-++.|..+|+-... ..-.+.+. .-+-.+.+.|+|.+..+ ..+.+++...
T Consensus 581 d~~FS~DgrWlisasmD~tIr~wDlpt~~-lID~~~vd-----~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 581 DMTFSPDGRWLISASMDSTIRTWDLPTGT-LIDGLLVD-----SPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred eeEeCCCCcEEEEeecCCcEEEEeccCcc-eeeeEecC-----CcceeeEECCCCCEEEEEEecCceEEEE
Confidence 99999999544555567788888887763 33333332 12567888888865544 4433555443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.24 Score=49.62 Aligned_cols=181 Identities=12% Similarity=0.063 Sum_probs=95.5
Q ss_pred CCCEEEEEec------CCeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 59 VGRRFLVSFL------DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 59 ~g~~~~~~~~------~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
++.+|+++.. ...++++|+.... |...+.+.. ..-.++++- +|.|||..+.........+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~----------W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve 370 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKI----------HVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIE 370 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCe----------EeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEE
Confidence 4567777632 1468899864332 433343321 122455554 68999974321111124589
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-----------------------CCeEEEEccCCcEEE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-----------------------SSKIWKVGVEGQLLS 188 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-----------------------~~~I~~~d~~g~~~~ 188 (335)
+||+.+++-....+.+.+ ......++ -+|++||.... ...+.++||....-.
T Consensus 371 ~Ydp~~~~W~~~~~mp~~---r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~ 445 (557)
T PHA02713 371 CYTMGDDKWKMLPDMPIA---LSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE 445 (557)
T ss_pred EEECCCCeEEECCCCCcc---cccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe
Confidence 999998754433333211 22222233 36899997532 246888998765433
Q ss_pred EecCCccccccccccccccCeEEEccCCeEEEEECCC------CEEEEEeCCC-CceeEEEEeccCCcCCCCCCeEEEcC
Q 039428 189 IIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCS------GNLFKIDIRK-EEEEVKLIELRGGSSLSLGDGLALLS 261 (335)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~------~~v~~~d~~~-~~~~~~~~~~~g~~~~~~pdGia~d~ 261 (335)
.+. .+.. .....+++.- +|.|||.-..+ ..+.++|+.. + ....+..-... ..--|+++-
T Consensus 446 ~v~--~m~~------~r~~~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~--~W~~~~~m~~~--r~~~~~~~~- 511 (557)
T PHA02713 446 TLP--NFWT------GTIRPGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYN--GWELITTTESR--LSALHTILH- 511 (557)
T ss_pred ecC--CCCc------ccccCcEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCC--CeeEccccCcc--cccceeEEE-
Confidence 221 1111 1123455554 78999875432 3578999997 5 44433211101 112455554
Q ss_pred CCcEEEEec
Q 039428 262 PTKLVVAGN 270 (335)
Q Consensus 262 ~g~l~va~~ 270 (335)
+|++|+.+.
T Consensus 512 ~~~iyv~Gg 520 (557)
T PHA02713 512 DNTIMMLHC 520 (557)
T ss_pred CCEEEEEee
Confidence 579999954
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.081 Score=53.06 Aligned_cols=200 Identities=15% Similarity=0.127 Sum_probs=125.0
Q ss_pred eeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 53 TAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 53 gia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
.+.|+.++ .++.+..+.+|.-|++..... +. ....+. -.+.|+|+|-+++.|+. ....+ .+..
T Consensus 374 DlSWSKn~-fLLSSSMDKTVRLWh~~~~~C----L~---~F~Hnd----fVTcVaFnPvDDryFiS--GSLD~---KvRi 436 (712)
T KOG0283|consen 374 DLSWSKNN-FLLSSSMDKTVRLWHPGRKEC----LK---VFSHND----FVTCVAFNPVDDRYFIS--GSLDG---KVRL 436 (712)
T ss_pred ecccccCC-eeEeccccccEEeecCCCcce----ee---EEecCC----eeEEEEecccCCCcEee--ccccc---ceEE
Confidence 67888765 455556688888887543331 22 334454 46799999988899883 33333 4889
Q ss_pred EECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEE
Q 039428 133 YDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVY 212 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~ 212 (335)
|+....++..-.++ ......+++.|||...|..+.+|.+..++..+.....-..-..... .........|+.+
T Consensus 437 WsI~d~~Vv~W~Dl------~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~-Kk~~~~rITG~Q~ 509 (712)
T KOG0283|consen 437 WSISDKKVVDWNDL------RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK-KKKQGKRITGLQF 509 (712)
T ss_pred eecCcCeeEeehhh------hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC-ccccCceeeeeEe
Confidence 99888777744454 2456679999999988889999999999998865442100000100 0011225889999
Q ss_pred ccCC--eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 213 HPDG--FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 213 ~~dg--~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
.|.. .|.|+. .+.+|..||....+ .+..+... .......-..+..||+.+|+......+.+.+.
T Consensus 510 ~p~~~~~vLVTS-nDSrIRI~d~~~~~-lv~KfKG~--~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 510 FPGDPDEVLVTS-NDSRIRIYDGRDKD-LVHKFKGF--RNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred cCCCCCeEEEec-CCCceEEEeccchh-hhhhhccc--ccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 9754 588775 56679999985542 33333311 11122345666778887777554445555543
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.043 Score=50.67 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=114.1
Q ss_pred cCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEe-----------C---
Q 039428 45 HSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVD-----------R--- 110 (335)
Q Consensus 45 ~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d-----------~--- 110 (335)
.+-..--.++.|..+| ++|.+..+++|-+|+..+|.. .. .++... .+.+.|+.+ +
T Consensus 244 sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~----~r---~lkGHa---hwvN~lalsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 244 SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKL----CR---ELKGHA---HWVNHLALSTDYVLRTGAFDHTGR 312 (480)
T ss_pred ccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhH----HH---hhcccc---hheeeeeccchhhhhccccccccc
Confidence 3333445788888765 666777889999998766542 11 111110 122222222 1
Q ss_pred ---------------------CCCeEEEEEecCCCCccceEEEEECCCC-eEEEEeecCCCccCCCCCCceeECCCCcEE
Q 039428 111 ---------------------PRNRLLVAFTDVLGNKYSALAAYDLSTW-KRLFLTQLSGKSEEKSTADDIAVDAEGNAY 168 (335)
Q Consensus 111 ---------------------~~g~l~v~~~D~~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~p~~~~vd~~G~ly 168 (335)
+.+.-.|...|. ..++.|++... +.+..... . ....|.+.|.|||+..
T Consensus 313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd-----~tlflW~p~~~kkpi~rmtg----H-q~lVn~V~fSPd~r~I 382 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDD-----FTLFLWNPFKSKKPITRMTG----H-QALVNHVSFSPDGRYI 382 (480)
T ss_pred cCCChHHHHHHHHHHHHHhhccCcceeEEecCC-----ceEEEecccccccchhhhhc----h-hhheeeEEECCCccEE
Confidence 112224433332 35777877532 22211111 1 4678999999999888
Q ss_pred EEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccC
Q 039428 169 VTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRG 247 (335)
Q Consensus 169 V~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g 247 (335)
.+-+....|..++.. |+++..|.. ......-++++.|-+|+|+-+.+..|.+++....+ ...+++|
T Consensus 383 ASaSFDkSVkLW~g~tGk~lasfRG----------Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK---l~~DLpG 449 (480)
T KOG0271|consen 383 ASASFDKSVKLWDGRTGKFLASFRG----------HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK---LKQDLPG 449 (480)
T ss_pred EEeecccceeeeeCCCcchhhhhhh----------ccceeEEEEeccCccEEEEcCCCceEEEEEeeeee---ecccCCC
Confidence 888888899888865 666543321 11125678999999999999999999888888753 2344444
Q ss_pred CcCCCCCCeEEEcCCCcEEEEec
Q 039428 248 GSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 248 ~~~~~~pdGia~d~~g~l~va~~ 270 (335)
+ -.....+...|||...+++.
T Consensus 450 -h-~DEVf~vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 450 -H-ADEVFAVDWSPDGQRVASGG 470 (480)
T ss_pred -C-CceEEEEEecCCCceeecCC
Confidence 2 12245666668888766644
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.16 Score=43.36 Aligned_cols=137 Identities=15% Similarity=0.192 Sum_probs=78.2
Q ss_pred eeEEcCCCCEEEEEec------------CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEe
Q 039428 53 TAKWDDVGRRFLVSFL------------DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFT 120 (335)
Q Consensus 53 gia~d~~g~~~~~~~~------------~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~ 120 (335)
.+.|.++|+.+.+... ...|++++..+.. .. .+.... ......++.+|.+.++.|+.+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~-----~~---~i~l~~--~~~I~~~~WsP~g~~favi~g 79 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP-----VE---SIELKK--EGPIHDVAWSPNGNEFAVIYG 79 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc-----cc---eeeccC--CCceEEEEECcCCCEEEEEEc
Confidence 4567777765555421 1357888643222 12 221111 124678999986566666543
Q ss_pred cCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC---CCCeEEEEccCCcEEEEecCCcccc
Q 039428 121 DVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV---VSSKIWKVGVEGQLLSIIRSPLFTA 197 (335)
Q Consensus 121 D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~---~~~~I~~~d~~g~~~~~~~~~~~~~ 197 (335)
+.. ..+..||.+...+. .+. ....|.+..+|+|+..+... .+|.|..+|.+..... . .+.
T Consensus 80 ~~~----~~v~lyd~~~~~i~---~~~-----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i-~---~~~- 142 (194)
T PF08662_consen 80 SMP----AKVTLYDVKGKKIF---SFG-----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI-S---TFE- 142 (194)
T ss_pred cCC----cccEEEcCcccEeE---eec-----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe-e---ccc-
Confidence 322 35889998743322 221 23557899999998666532 3577899998743322 1 111
Q ss_pred ccccccccccCeEEEccCC-eEEEEE
Q 039428 198 KEWYKNVFGLNGIVYHPDG-FLIVIH 222 (335)
Q Consensus 198 ~~~~~~~~~p~Gia~~~dg-~Lyvad 222 (335)
......++++||| ++..+.
T Consensus 143 ------~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 143 ------HSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred ------cCcEEEEEEcCCCCEEEEEE
Confidence 1236899999999 444443
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.23 Score=44.02 Aligned_cols=202 Identities=13% Similarity=0.159 Sum_probs=120.9
Q ss_pred ceeeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.-..+||+|. |.+++.+..+..|..++...+. . ..-+..+. .+ -.+....++..| .|++.++ +... .
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~---s-~~ck~vld-~~-hkrsVRsvAwsp-~g~~La~-aSFD----~ 83 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD---S-WTCKTVLD-DG-HKRSVRSVAWSP-HGRYLAS-ASFD----A 83 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCC---c-EEEEEecc-cc-chheeeeeeecC-CCcEEEE-eecc----c
Confidence 4579999998 7777777878889988743222 1 11112321 11 114578899997 7775543 3332 2
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC--CcEEEEecCCccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE--GQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~--g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
.+..|.-..++......++++ .+..-.++..++|++..+-+....||.+..+ +++.... .+. +...-
T Consensus 84 t~~Iw~k~~~efecv~~lEGH---EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~a---VL~-----~HtqD 152 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGH---ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIA---VLQ-----EHTQD 152 (312)
T ss_pred eEEEeecCCCceeEEeeeecc---ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEe---eec-----ccccc
Confidence 466666556666655555443 4566779999999999998888888877655 4443310 010 11223
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCC-CCc-eeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEEEE
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIR-KEE-EEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARLVE 279 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~-~~~-~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~ 279 (335)
...+.+.|..-|+++-+-.+.|..++-. ++. ...+.+. + . -.....++|++.| +|..+.. ...+++.+
T Consensus 153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~--g-~-~~TVW~~~F~~~G~rl~s~sd-D~tv~Iw~ 223 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD--G-H-ENTVWSLAFDNIGSRLVSCSD-DGTVSIWR 223 (312)
T ss_pred ccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec--C-c-cceEEEEEecCCCceEEEecC-CcceEeee
Confidence 6789999977777777666655444433 320 0233332 3 2 2357889999988 4555533 23455544
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.13 Score=45.99 Aligned_cols=115 Identities=20% Similarity=0.196 Sum_probs=66.3
Q ss_pred CeEEEEeecCCCccCCCCCCceeECCC-C-cEEEEeCCCCeEEEEccCCcEEEE-ecCCccccccccccccccCeEEEcc
Q 039428 138 WKRLFLTQLSGKSEEKSTADDIAVDAE-G-NAYVTDVVSSKIWKVGVEGQLLSI-IRSPLFTAKEWYKNVFGLNGIVYHP 214 (335)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~p~~~~vd~~-G-~lyV~d~~~~~I~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~p~Gia~~~ 214 (335)
|+.+....+ ..+-.||+++|. . .+.++-...---+.||+++....+ +-+. ....+.-+| +|++
T Consensus 58 Gk~v~~~~l------paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~-------~~RHfyGHG-vfs~ 123 (366)
T COG3490 58 GKIVFATAL------PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ-------EGRHFYGHG-VFSP 123 (366)
T ss_pred Cceeeeeec------ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc-------cCceeeccc-ccCC
Confidence 445544444 245667888886 3 366666666667788888654321 1110 001122344 7899
Q ss_pred CC-eEEEEECC----CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 215 DG-FLIVIHMC----SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 215 dg-~Lyvad~~----~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
|| .||.++.+ .+-|-.+|....-..+..++..| -+|.-|.+.+||++.|.-+
T Consensus 124 dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G----iGpHev~lm~DGrtlvvan 180 (366)
T COG3490 124 DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG----IGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCcEEEeecCCCCCCCceEEEEecccccceecccccCC----cCcceeEEecCCcEEEEeC
Confidence 99 78887643 45676777664310222333333 3599999999997655544
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.18 Score=47.60 Aligned_cols=225 Identities=14% Similarity=0.129 Sum_probs=126.0
Q ss_pred eeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 53 TAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 53 gia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
.+|+++||..+.++..+..|+.|+..+.+. ...+.+.. +...++++-....++|.++.|. .|..
T Consensus 207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~eh---------v~~~~ghr-~~V~~L~fr~gt~~lys~s~Dr------svkv 270 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEH---------VKVFKGHR-GAVSSLAFRKGTSELYSASADR------SVKV 270 (479)
T ss_pred EEEEcCCCcEEEecCCCceEEEecCcccch---------hhcccccc-cceeeeeeecCccceeeeecCC------ceEE
Confidence 679999998666666678888998543331 11122221 3467888876678999987764 3777
Q ss_pred EECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC--CCCeEEEEccCCcEEEEecCCccccccccccccccCeE
Q 039428 133 YDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV--VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~--~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
|+.+-...+- .+-+ . .....++-.-..++..-... .+-++|++ ++...+. |.. ....+..+
T Consensus 271 w~~~~~s~ve--tlyG--H-qd~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqli------frg-----~~~sidcv 333 (479)
T KOG0299|consen 271 WSIDQLSYVE--TLYG--H-QDGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLI------FRG-----GEGSIDCV 333 (479)
T ss_pred EehhHhHHHH--HHhC--C-ccceeeechhcccceEEeccccceeEEEec-cccceee------eeC-----CCCCeeeE
Confidence 7765432220 1100 0 11222233333444332221 13577777 3322222 111 12357888
Q ss_pred EEccCCeEEEEECCCCEEEEEeCCCCceeEEEEecc-CCc----CCC---CCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 211 VYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELR-GGS----SLS---LGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 211 a~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~-g~~----~~~---~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
++-.+. =||+-+.+|.|.-.++...+ .+...... |-. +++ .-.++++-+..+|+.++..++.+++....+
T Consensus 334 ~~In~~-HfvsGSdnG~IaLWs~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 334 AFINDE-HFVSGSDNGSIALWSLLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred EEeccc-ceeeccCCceEEEeeecccC-ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 888554 45677889999888887654 33332221 100 011 235677777778888866556677766667
Q ss_pred CcEEEEEeeeecCCCCCcceEEEEe--CCeEEEE
Q 039428 283 GWETASVVAKFNGPTHRVATAATVK--DGRVYLS 314 (335)
Q Consensus 283 ~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~ 314 (335)
+.+..+++..+..+ .+.++++|. +.+|++.
T Consensus 412 g~r~i~~l~~ls~~--GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 412 GLRAINLLYSLSLV--GFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred Cccccceeeecccc--cEEEEEEEccCCCEEEEe
Confidence 75555566655433 334578873 5557764
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.42 Score=46.20 Aligned_cols=136 Identities=11% Similarity=0.095 Sum_probs=72.4
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeC--CCCeEEE--EccC----CcEEEEecCCccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV--VSSKIWK--VGVE----GQLLSIIRSPLFTAK 198 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~--~~~~I~~--~d~~----g~~~~~~~~~~~~~~ 198 (335)
..|+++++++++......+.+ .....++.|||+ +.++.. .+..++. ++.+ ++..++... .
T Consensus 211 ~~I~~~~l~~g~~~~lt~~~g------~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~-~---- 279 (428)
T PRK01029 211 PKIFLGSLENPAGKKILALQG------NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE-A---- 279 (428)
T ss_pred ceEEEEECCCCCceEeecCCC------CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC-C----
Confidence 579999999887664444421 222468899995 444432 2335555 3433 222221110 0
Q ss_pred cccccccccCeEEEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEec--CC
Q 039428 199 EWYKNVFGLNGIVYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGN--PY 272 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~--~~ 272 (335)
.......+++||| .|+++... ..+||+++.+..++..+.+.... .......+.|||+ ++++.. +.
T Consensus 280 -----~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~----~~~~~p~wSPDG~~Laf~~~~~g~ 350 (428)
T PRK01029 280 -----FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY----RNSSCPAWSPDGKKIAFCSVIKGV 350 (428)
T ss_pred -----CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC----CCccceeECCCCCEEEEEEcCCCC
Confidence 0113457999999 56655432 34799998764311334443221 1234567888886 444422 22
Q ss_pred CeEEEEEcCCC
Q 039428 273 PSARLVESSDG 283 (335)
Q Consensus 273 ~~~~v~~~~~~ 283 (335)
..+.+++...+
T Consensus 351 ~~I~v~dl~~g 361 (428)
T PRK01029 351 RQICVYDLATG 361 (428)
T ss_pred cEEEEEECCCC
Confidence 45777776544
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.036 Score=50.00 Aligned_cols=197 Identities=12% Similarity=0.126 Sum_probs=114.9
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
-++.++.+..++..+..+|.|-+|...+|.. +. ++-.... .....+.++.++..+.-+.-|. .+.
T Consensus 267 lci~FSRDsEMlAsGsqDGkIKvWri~tG~C----lR--rFdrAHt---kGvt~l~FSrD~SqiLS~sfD~------tvR 331 (508)
T KOG0275|consen 267 LCISFSRDSEMLASGSQDGKIKVWRIETGQC----LR--RFDRAHT---KGVTCLSFSRDNSQILSASFDQ------TVR 331 (508)
T ss_pred EEEeecccHHHhhccCcCCcEEEEEEecchH----HH--Hhhhhhc---cCeeEEEEccCcchhhcccccc------eEE
Confidence 5677777777766666677765555445652 11 1211111 2455777876555565532221 344
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIV 211 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia 211 (335)
.--+++|+... .+.+ . .++.|+..+.+||+-.++-+..+.|.+++.+...-. ..|..+ ++....|.+.
T Consensus 332 iHGlKSGK~LK--EfrG--H-sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~----~Tfk~~---~~d~~vnsv~ 399 (508)
T KOG0275|consen 332 IHGLKSGKCLK--EFRG--H-SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECL----STFKPL---GTDYPVNSVI 399 (508)
T ss_pred EeccccchhHH--HhcC--c-cccccceEEcCCCCeEEEecCCccEEEecCcchhhh----hhccCC---CCcccceeEE
Confidence 55566665541 1211 1 478899999999998888888999999987643211 134332 1334578888
Q ss_pred EccCC--eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEc
Q 039428 212 YHPDG--FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVES 280 (335)
Q Consensus 212 ~~~dg--~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~ 280 (335)
+-|.+ ++.|++ .++.|+..+..+. .++.+.- |.+.-+.--..++.|.|. +|+.+- ..-...+..
T Consensus 400 ~~PKnpeh~iVCN-rsntv~imn~qGQ--vVrsfsS-GkREgGdFi~~~lSpkGewiYcigE-D~vlYCF~~ 466 (508)
T KOG0275|consen 400 LLPKNPEHFIVCN-RSNTVYIMNMQGQ--VVRSFSS-GKREGGDFINAILSPKGEWIYCIGE-DGVLYCFSV 466 (508)
T ss_pred EcCCCCceEEEEc-CCCeEEEEeccce--EEeeecc-CCccCCceEEEEecCCCcEEEEEcc-CcEEEEEEe
Confidence 88876 677777 5778999999887 6777652 322111122455667775 444432 233444443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.06 Score=49.44 Aligned_cols=151 Identities=15% Similarity=0.279 Sum_probs=95.2
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCc-eeECCC-CcEEEE---eCCCCeE
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADD-IAVDAE-GNAYVT---DVVSSKI 177 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~-~~vd~~-G~lyV~---d~~~~~I 177 (335)
...+..+ +.||.|+..+ .|++||.+..+++..++..+ ..|.+ .+..++ .+-|++ +...|.|
T Consensus 90 IL~VrmN--r~RLvV~Lee-------~IyIydI~~MklLhTI~t~~-----~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 90 ILAVRMN--RKRLVVCLEE-------SIYIYDIKDMKLLHTIETTP-----PNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred eEEEEEc--cceEEEEEcc-------cEEEEecccceeehhhhccC-----CCccceEeeccCCCCceEEecCCCCCceE
Confidence 4566776 6899998764 39999999888775544321 22332 233443 344554 4557899
Q ss_pred EEEccCCcE-EEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEE-eCCCCceeEEEEeccCCcCCCCCC
Q 039428 178 WKVGVEGQL-LSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKI-DIRKEEEEVKLIELRGGSSLSLGD 255 (335)
Q Consensus 178 ~~~d~~g~~-~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~-d~~~~~~~~~~~~~~g~~~~~~pd 255 (335)
+.+|...-. ...+.. .......|+|++||.+..+-+..|+|.|+ ....++ .+..|.. |-. ...-.
T Consensus 156 ~l~d~~nl~~v~~I~a----------H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~-kl~eFRR-G~~-~~~Iy 222 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINA----------HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ-KLYEFRR-GTY-PVSIY 222 (391)
T ss_pred EEEEcccceeeeEEEe----------cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc-EeeeeeC-Cce-eeEEE
Confidence 999976432 222211 11236789999999999999999987666 444443 5555543 312 34467
Q ss_pred eEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 256 GLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 256 Gia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
-+++++++.+..+......+-++..
T Consensus 223 SL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred EEEECCCCCeEEEecCCCeEEEEEe
Confidence 8999999886666443366777664
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.012 Score=43.22 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=27.1
Q ss_pred ccccCeEEEccCC-eEEEEECCCCEEEEEeCC
Q 039428 204 VFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIR 234 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~ 234 (335)
...||||+++|++ .|||++...+.|+++...
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3459999999998 999999999999988754
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.56 Score=46.98 Aligned_cols=185 Identities=10% Similarity=0.087 Sum_probs=95.7
Q ss_pred ceEEEeCCCCeEEEEEecC-CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC-----CeE
Q 039428 104 MGIAVDRPRNRLLVAFTDV-LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS-----SKI 177 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~-~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~-----~~I 177 (335)
.++++- ++.|||+.+-. .....+.+.+||+.++.-....+.+ .+...+ .++.-+|.+|+....+ ..+
T Consensus 297 ~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~---~~R~~~--~~~~~~g~IYviGG~~~~~~~~sv 369 (557)
T PHA02713 297 YASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMI---KNRCRF--SLAVIDDTIYAIGGQNGTNVERTI 369 (557)
T ss_pred eEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCc---chhhce--eEEEECCEEEEECCcCCCCCCceE
Confidence 455554 68999974311 1111256899999887543222221 111222 2222368899976532 458
Q ss_pred EEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECC-----------------------CCEEEEEeCC
Q 039428 178 WKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC-----------------------SGNLFKIDIR 234 (335)
Q Consensus 178 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~-----------------------~~~v~~~d~~ 234 (335)
.++|+....-..+. .+.. ...-.+.+.. +|.||+.-.. .+.+.++|+.
T Consensus 370 e~Ydp~~~~W~~~~--~mp~------~r~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~ 440 (557)
T PHA02713 370 ECYTMGDDKWKMLP--DMPI------ALSSYGMCVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV 440 (557)
T ss_pred EEEECCCCeEEECC--CCCc------ccccccEEEE-CCEEEEEeCCCcccccccccccccccccccccccceEEEECCC
Confidence 88998765433211 1111 1112234433 7899986432 2468999998
Q ss_pred CCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCC------CeEEEEEcCC--CcEEEEEeeeecCCCCCcceEEEE
Q 039428 235 KEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPY------PSARLVESSD--GWETASVVAKFNGPTHRVATAATV 306 (335)
Q Consensus 235 ~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~------~~~~v~~~~~--~~~~~~~~~~~~~p~~~~Pt~va~ 306 (335)
.+ ....+.--. . -...-+++.- +|.+||.+... ..+.+++... .|... ..+..+.. -.++++
T Consensus 441 td--~W~~v~~m~-~-~r~~~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~---~~m~~~r~--~~~~~~ 510 (557)
T PHA02713 441 NN--IWETLPNFW-T-GTIRPGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI---TTTESRLS--ALHTIL 510 (557)
T ss_pred CC--eEeecCCCC-c-ccccCcEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc---cccCcccc--cceeEE
Confidence 87 444443110 0 0112345543 57999995421 1233455553 37643 23322222 235666
Q ss_pred eCCeEEEE
Q 039428 307 KDGRVYLS 314 (335)
Q Consensus 307 ~~g~lyV~ 314 (335)
-+|+|||.
T Consensus 511 ~~~~iyv~ 518 (557)
T PHA02713 511 HDNTIMML 518 (557)
T ss_pred ECCEEEEE
Confidence 79999984
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.39 Score=44.16 Aligned_cols=155 Identities=9% Similarity=0.056 Sum_probs=98.3
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
-.++.+|+.++..+...+..-+.|+..++..+ - ..++. +.+...+.++. +|.+.++ +|..+ .|.
T Consensus 68 Favsl~P~~~l~aTGGgDD~AflW~~~~ge~~----~-----eltgH-KDSVt~~~Fsh-dgtlLAT-GdmsG----~v~ 131 (399)
T KOG0296|consen 68 FAVSLHPNNNLVATGGGDDLAFLWDISTGEFA----G-----ELTGH-KDSVTCCSFSH-DGTLLAT-GDMSG----KVL 131 (399)
T ss_pred EEEEeCCCCceEEecCCCceEEEEEccCCcce----e-----EecCC-CCceEEEEEcc-CceEEEe-cCCCc----cEE
Confidence 47788995554444466667677765455531 1 12221 13567788874 6666554 77764 499
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccCeE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
+++.+++...+....+ ..-..=+.-.|.+.++.+.+..+.+|.+.... ...+++ .. .....+.=
T Consensus 132 v~~~stg~~~~~~~~e-----~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~-----~G-----h~~~ct~G 196 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQE-----VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM-----SG-----HNSPCTCG 196 (399)
T ss_pred EEEcccCceEEEeecc-----cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe-----cC-----CCCCcccc
Confidence 9999988777554311 11112266788899999999999999998765 333332 11 11124445
Q ss_pred EEccCCeEEEEECCCCEEEEEeCCCCc
Q 039428 211 VYHPDGFLIVIHMCSGNLFKIDIRKEE 237 (335)
Q Consensus 211 a~~~dg~Lyvad~~~~~v~~~d~~~~~ 237 (335)
.|.|||...++-..++.|.+.++...+
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred cccCCCceEEEEecCceEEEEecCCCc
Confidence 788899666666679999999999874
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.058 Score=52.43 Aligned_cols=149 Identities=18% Similarity=0.204 Sum_probs=85.8
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..+.+|.+|++|+.+ ...+++||+.+++ .++ .. .+.. ....+.+..|. ++++||.+ |. .++
T Consensus 168 ~aLv~D~~g~lWvgT--~dGL~~fd~~~gk----alq---l~-s~~~-dk~I~al~~d~-qg~LWVGT-dq------Gv~ 228 (671)
T COG3292 168 VALVFDANGRLWVGT--PDGLSYFDAGRGK----ALQ---LA-SPPL-DKAINALIADV-QGRLWVGT-DQ------GVY 228 (671)
T ss_pred eeeeeeccCcEEEec--CCcceEEccccce----EEE---cC-CCcc-hhhHHHHHHHh-cCcEEEEe-cc------ceE
Confidence 466788888766554 5578999865444 121 21 1111 12445677774 89999964 32 388
Q ss_pred EEECCCCeEE-EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeE-EEEccCCcEEEEecCCccccccccccccccCe
Q 039428 132 AYDLSTWKRL-FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKI-WKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 132 ~~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I-~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
..++++.+.. ....+ +.....-+.-|.+|++|+... +|.. ++. ++..... +... ........|+
T Consensus 229 ~~e~~G~~~sn~~~~l-----p~~~I~ll~qD~qG~lWiGTe-nGl~r~~l-~rq~Lq~----~~~~---~~l~~S~vns 294 (671)
T COG3292 229 LQEAEGWRASNWGPML-----PSGNILLLVQDAQGELWIGTE-NGLWRTRL-PRQGLQI----PLSK---MHLGVSTVNS 294 (671)
T ss_pred EEchhhccccccCCCC-----cchheeeeecccCCCEEEeec-ccceeEec-CCCCccc----cccc---cCCccccccc
Confidence 8888774332 11111 123445577788999999744 3333 333 3322211 0101 0112334799
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCC
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~ 235 (335)
+..|.||.||+.. .+.++++....
T Consensus 295 L~~D~dGsLWv~t--~~giv~~~~a~ 318 (671)
T COG3292 295 LWLDTDGSLWVGT--YGGIVRYLTAD 318 (671)
T ss_pred eeeccCCCEeeec--cCceEEEecch
Confidence 9999999999985 45577776654
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.065 Score=49.94 Aligned_cols=198 Identities=11% Similarity=0.107 Sum_probs=117.4
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
+..+.+.+|-|||..+++++.++.|..+|. +|+. .. .| .+........+++.+++..++....|.
T Consensus 312 ~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl-Dgn~----~~--~W---~gvr~~~v~dlait~Dgk~vl~v~~d~----- 376 (519)
T KOG0293|consen 312 GFSVSSCAWCPDGFRFVTGSPDRTIIMWDL-DGNI----LG--NW---EGVRDPKVHDLAITYDGKYVLLVTVDK----- 376 (519)
T ss_pred CCCcceeEEccCCceeEecCCCCcEEEecC-Ccch----hh--cc---cccccceeEEEEEcCCCcEEEEEeccc-----
Confidence 355678899999999999988999999984 6762 11 12 221112467888887566676654443
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
.+..|+.++..-+-.+.. ........+..+|.+.+.+-..+.|..+|.+..... ..|.. ..+....
T Consensus 377 -~i~l~~~e~~~dr~lise------~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv----~kY~G---hkq~~fi 442 (519)
T KOG0293|consen 377 -KIRLYNREARVDRGLISE------EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLV----RKYFG---HKQGHFI 442 (519)
T ss_pred -ceeeechhhhhhhccccc------cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHH----HHhhc---ccccceE
Confidence 477888765422211111 233456888999999998888999999998733221 01111 0112223
Q ss_pred CeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEEEE
Q 039428 208 NGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARLVE 279 (335)
Q Consensus 208 ~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~ 279 (335)
-+-||.-.. ....+-+.+++||..+...++ .+..+ +| + .....-++..|.. .++.+....+.+++..
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr~sgk-ll~~L--sG-H-s~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHRISGK-LLAVL--SG-H-SKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEccCCc-eeEee--cC-C-cceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 444555333 455666778888888887774 33333 34 2 1234556666655 3444433335565543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.27 Score=45.46 Aligned_cols=202 Identities=13% Similarity=0.106 Sum_probs=122.0
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCC-CCcceeeeeE-----E-----eecCC--cCC--CCcceEEEeCCCCe
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEY-SPGTVLEEVK-----L-----VKEDD--VVG--NATMGIAVDRPRNR 114 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~-~~~~v~~~~~-----~-----~~~~~--~~~--~~p~Gi~~d~~~g~ 114 (335)
--+++.++++|.++..+.++..|-.|+.+... .+.+-.+.++ . .+.|- +.| .....+.+++ .+.
T Consensus 195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v 273 (423)
T KOG0313|consen 195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV 273 (423)
T ss_pred ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence 46899999999998888889988888721111 0000000000 0 00000 011 2346677774 777
Q ss_pred EEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC---CcEEEEec
Q 039428 115 LLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE---GQLLSIIR 191 (335)
Q Consensus 115 l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~---g~~~~~~~ 191 (335)
+|-+.-| +.|.+||+.++........ ....+.+...+.-++.++.+...-|..+||. |+....
T Consensus 274 ~yS~SwD------HTIk~WDletg~~~~~~~~------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~-- 339 (423)
T KOG0313|consen 274 IYSVSWD------HTIKVWDLETGGLKSTLTT------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ-- 339 (423)
T ss_pred eEeeccc------ceEEEEEeecccceeeeec------CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEE--
Confidence 8875443 5799999998876532211 3456778888888899998888888889986 333321
Q ss_pred CCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc-CCCcEEEEe
Q 039428 192 SPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL-SPTKLVVAG 269 (335)
Q Consensus 192 ~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d-~~g~l~va~ 269 (335)
.|.. ...-..++.++|.. +++++-+-++++...|.+..+..+..+...+++ =+++| .++.+.|++
T Consensus 340 --s~~g-----H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK------vl~vdW~~~~~IvSG 406 (423)
T KOG0313|consen 340 --SLIG-----HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK------VLSVDWNEGGLIVSG 406 (423)
T ss_pred --eeec-----chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce------EEEEeccCCceEEec
Confidence 1211 11226789999977 999999999999999988863233444322211 23444 335566665
Q ss_pred cCCCeEEEEE
Q 039428 270 NPYPSARLVE 279 (335)
Q Consensus 270 ~~~~~~~v~~ 279 (335)
...+.+++..
T Consensus 407 GaD~~l~i~~ 416 (423)
T KOG0313|consen 407 GADNKLRIFK 416 (423)
T ss_pred cCcceEEEec
Confidence 5456666654
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.022 Score=51.42 Aligned_cols=167 Identities=13% Similarity=0.184 Sum_probs=96.6
Q ss_pred CCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC--CCCcceEEEeCCCCeEEEEEecCC
Q 039428 46 SPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV--GNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~--~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
+....+|+..++|+|+.++.+.-+|-|-+|+--+|+. -+..+.-....+. ......|.+++ +..+.+. ...
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKl----rKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAs--Gsq 283 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKL----RKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLAS--GSQ 283 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchh----hhhhhhhhhcceeecccceEEEeecc-cHHHhhc--cCc
Confidence 3445799999999999777778899999998544541 1111111111111 12446677774 4444442 222
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccc
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~ 202 (335)
. +.|.+|...+|+-....+- . . ......+.|.+|+.-..+.+....+.....+ |+.+. .|..
T Consensus 284 D---GkIKvWri~tG~ClRrFdr--A-H-tkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK-----EfrG----- 346 (508)
T KOG0275|consen 284 D---GKIKVWRIETGQCLRRFDR--A-H-TKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK-----EFRG----- 346 (508)
T ss_pred C---CcEEEEEEecchHHHHhhh--h-h-ccCeeEEEEccCcchhhcccccceEEEeccccchhHH-----HhcC-----
Confidence 2 3477777777753321111 0 0 2345568888888766665665555444433 33332 2221
Q ss_pred cccccCeEEEccCCeEEEEECCCCEEEEEeCCCC
Q 039428 203 NVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 203 ~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
.....|-..+++||+-+++.+.++.|.+.+....
T Consensus 347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt 380 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT 380 (508)
T ss_pred ccccccceEEcCCCCeEEEecCCccEEEecCcch
Confidence 2234788899999977777778888888777664
|
|
| >COG3211 PhoX Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.017 Score=56.10 Aligned_cols=117 Identities=18% Similarity=0.178 Sum_probs=67.9
Q ss_pred CCcceEEEeCCCCeEEEEEecCC-----------CCccceEEEEECCCC-------eEE-EEeecCC-CccC--------
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVL-----------GNKYSALAAYDLSTW-------KRL-FLTQLSG-KSEE-------- 152 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~-----------~~~~~~v~~~d~~~~-------~~~-~~~~~~~-~~~~-------- 152 (335)
.+|.+|++.+..+++|++..+.. .+...+|++|-+.++ +.. +.....+ ..+.
T Consensus 417 dRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~ 496 (616)
T COG3211 417 DRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINA 496 (616)
T ss_pred cCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCccc
Confidence 46899999998899999865433 112367999988765 211 2111111 0011
Q ss_pred --CCCCCceeECCCCcEEEEe-CCC----C---eEE-EEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEE
Q 039428 153 --KSTADDIAVDAEGNAYVTD-VVS----S---KIW-KVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIV 220 (335)
Q Consensus 153 --~~~p~~~~vd~~G~lyV~d-~~~----~---~I~-~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyv 220 (335)
++.|.+++||+.|+|||+. ... + .++ ...++++.-++. ..+..| ......|+||+||+ .|||
T Consensus 497 ~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~--rf~t~P----~g~E~tG~~FspD~~TlFV 570 (616)
T COG3211 497 NWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIK--RFLTGP----IGCEFTGPCFSPDGKTLFV 570 (616)
T ss_pred ccccCCCceEECCCCCEEEEecCCCCccCcccccccccccCCCccceee--eeccCC----CcceeecceeCCCCceEEE
Confidence 5669999999999999963 221 2 122 222333221110 122222 22336799999999 8988
Q ss_pred EEC
Q 039428 221 IHM 223 (335)
Q Consensus 221 ad~ 223 (335)
.-.
T Consensus 571 ~vQ 573 (616)
T COG3211 571 NVQ 573 (616)
T ss_pred Eec
Confidence 743
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.25 Score=45.36 Aligned_cols=116 Identities=15% Similarity=0.083 Sum_probs=78.6
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.-.+++++|. +-||++ ..+++|-.||..+|+ +. ++.++.. ....|++++++.--+|.+..| .
T Consensus 153 WVr~vavdP~-n~wf~tgs~DrtikIwDlatg~-----Lk----ltltGhi-~~vr~vavS~rHpYlFs~ged------k 215 (460)
T KOG0285|consen 153 WVRSVAVDPG-NEWFATGSADRTIKIWDLATGQ-----LK----LTLTGHI-ETVRGVAVSKRHPYLFSAGED------K 215 (460)
T ss_pred eEEEEeeCCC-ceeEEecCCCceeEEEEcccCe-----EE----Eeecchh-heeeeeeecccCceEEEecCC------C
Confidence 5689999997 566666 778999999977665 22 2233322 256899998644445443222 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEE
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLL 187 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~ 187 (335)
.|..||++.++++..+.. . .+....+.+.|--.+.++......+.++|...+..
T Consensus 216 ~VKCwDLe~nkvIR~YhG----H-lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYHG----H-LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS 269 (460)
T ss_pred eeEEEechhhhhHHHhcc----c-cceeEEEeccccceeEEecCCcceEEEeeecccce
Confidence 699999998877633322 1 45566788888777888877777888888776543
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.36 Score=45.87 Aligned_cols=223 Identities=16% Similarity=0.155 Sum_probs=126.8
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
..++.+..||.++.++-.+|-|.+||. ..+. ++. .+.... ...+-+.+.+.++.+++...|. ..+
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~-k~r~---iLR---~~~ah~---apv~~~~f~~~d~t~l~s~sDd-----~v~ 135 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDM-KSRV---ILR---QLYAHQ---APVHVTKFSPQDNTMLVSGSDD-----KVV 135 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEecc-ccHH---HHH---HHhhcc---CceeEEEecccCCeEEEecCCC-----ceE
Confidence 568889999998888877899999983 2321 111 111111 1346778888777888754443 245
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
..||.++..+ ..++.+. ..+..-.++.|- +.+.||.++.|.|..+|......++. .+.- +.-...
T Consensus 136 k~~d~s~a~v--~~~l~~h---tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~---elnh------g~pVe~ 201 (487)
T KOG0310|consen 136 KYWDLSTAYV--QAELSGH---TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV---ELNH------GCPVES 201 (487)
T ss_pred EEEEcCCcEE--EEEecCC---cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE---EecC------CCceee
Confidence 5677776654 3344332 345555666664 67999999999999999875422211 1110 111567
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEE
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASV 289 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~ 289 (335)
+.+-|.|.++++- +++.|.++|+.++. +.+....++ -....-+.+..++.-.++..=...++|++. +.|+.. .
T Consensus 202 vl~lpsgs~iasA-gGn~vkVWDl~~G~---qll~~~~~H-~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~-t~~Kvv-~ 274 (487)
T KOG0310|consen 202 VLALPSGSLIASA-GGNSVKVWDLTTGG---QLLTSMFNH-NKTVTCLRLASDSTRLLSGSLDRHVKVFDT-TNYKVV-H 274 (487)
T ss_pred EEEcCCCCEEEEc-CCCeEEEEEecCCc---eehhhhhcc-cceEEEEEeecCCceEeecccccceEEEEc-cceEEE-E
Confidence 8888888887664 56678888888542 111110101 123456777666643444332355888874 334321 1
Q ss_pred eeeecCCCCCcceEEEE--eCCeEEE
Q 039428 290 VAKFNGPTHRVATAATV--KDGRVYL 313 (335)
Q Consensus 290 ~~~~~~p~~~~Pt~va~--~~g~lyV 313 (335)
.-.+.+|. -++++ ++.++++
T Consensus 275 s~~~~~pv----Lsiavs~dd~t~vi 296 (487)
T KOG0310|consen 275 SWKYPGPV----LSIAVSPDDQTVVI 296 (487)
T ss_pred eeecccce----eeEEecCCCceEEE
Confidence 12233443 24555 3566666
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.36 Score=42.82 Aligned_cols=173 Identities=11% Similarity=0.157 Sum_probs=108.9
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCC-eEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEE
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW-KRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKV 180 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~ 180 (335)
+...++.+|..|+++++.+ .+ ..|..++..++ .......+.. +. ......++..|.|++..+.+....+..+
T Consensus 16 r~W~~awhp~~g~ilAscg---~D--k~vriw~~~~~~s~~ck~vld~-~h-krsVRsvAwsp~g~~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCG---TD--KAVRIWSTSSGDSWTCKTVLDD-GH-KRSVRSVAWSPHGRYLASASFDATVVIW 88 (312)
T ss_pred cEEEEEeccCCceEEEeec---CC--ceEEEEecCCCCcEEEEEeccc-cc-hheeeeeeecCCCcEEEEeeccceEEEe
Confidence 5668899984477776432 22 36888887743 2222222221 11 3455679999999988887887777766
Q ss_pred ccC-CcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEE
Q 039428 181 GVE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLAL 259 (335)
Q Consensus 181 d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~ 259 (335)
... +.+..+. .+.. .-....+++++++|+++.+-+....|+....+.+. +...+.+-.++ ..-.-.+..
T Consensus 89 ~k~~~efecv~---~lEG-----HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-Efec~aVL~~H-tqDVK~V~W 158 (312)
T KOG0645|consen 89 KKEDGEFECVA---TLEG-----HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-EFECIAVLQEH-TQDVKHVIW 158 (312)
T ss_pred ecCCCceeEEe---eeec-----cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-cEEEEeeeccc-cccccEEEE
Confidence 654 4443321 1111 11236799999999888888888888888877543 44444332223 234678999
Q ss_pred cCCCcEEEEecCCCeEEEEEcC--CCcEEEEEee
Q 039428 260 LSPTKLVVAGNPYPSARLVESS--DGWETASVVA 291 (335)
Q Consensus 260 d~~g~l~va~~~~~~~~v~~~~--~~~~~~~~~~ 291 (335)
.|...|.++....|.+++.+.. ++|.....+.
T Consensus 159 HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~ 192 (312)
T KOG0645|consen 159 HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD 192 (312)
T ss_pred cCCcceeEEeccCCeEEEEeecCCCCeeEEEEec
Confidence 9987777775556889988755 3387655544
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.52 Score=43.95 Aligned_cols=189 Identities=12% Similarity=0.046 Sum_probs=96.4
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.....++++..+.+.|++. ..+.|++=.+ .|+. .+. .....+. .......+.++. ++.|++ ...
T Consensus 45 ~~~l~~v~F~d~~~g~avG-~~G~il~T~D-gG~t----W~~-~~~~~~~-~~~~l~~v~~~~--~~~~~~-G~~----- 108 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVG-SNRTLLETND-GGET----WEE-RSLDLPE-ENFRLISISFKG--DEGWIV-GQP----- 108 (334)
T ss_pred CCceEEEEEeCCCcEEEEE-CCCEEEEEcC-CCCC----ceE-CccCCcc-cccceeeeEEcC--CcEEEe-CCC-----
Confidence 3456779998766767666 4678888753 3441 111 0001111 112345677763 446764 221
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
+.|++ ..+.|+.......... . ...+..+....++++|++. ..+.|++-+-.|+.-+.+..+ .....
T Consensus 109 g~i~~-S~DgG~tW~~~~~~~~-~-~~~~~~i~~~~~~~~~~~g-~~G~i~~S~DgG~tW~~~~~~---------~~g~~ 175 (334)
T PRK13684 109 SLLLH-TTDGGKNWTRIPLSEK-L-PGSPYLITALGPGTAEMAT-NVGAIYRTTDGGKNWEALVED---------AAGVV 175 (334)
T ss_pred ceEEE-ECCCCCCCeEccCCcC-C-CCCceEEEEECCCcceeee-ccceEEEECCCCCCceeCcCC---------CcceE
Confidence 23555 3444443222211100 0 1234444444445667664 456788776666543322111 11236
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
+++++++++.+++ -...+.+++-..++++ ..+.+.... -....++++.+++.+|+++.
T Consensus 176 ~~i~~~~~g~~v~-~g~~G~i~~s~~~gg~-tW~~~~~~~---~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 176 RNLRRSPDGKYVA-VSSRGNFYSTWEPGQT-AWTPHQRNS---SRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred EEEEECCCCeEEE-EeCCceEEEEcCCCCC-eEEEeeCCC---cccceeeeEcCCCCEEEEec
Confidence 7888888874443 3356777775323332 344443322 23467899989999998866
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.34 Score=44.67 Aligned_cols=161 Identities=14% Similarity=0.208 Sum_probs=98.0
Q ss_pred cceeee-EEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceE-EEeCCCCeEEEEEecCCCCc
Q 039428 49 FLCETA-KWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGI-AVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 49 ~~pegi-a~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi-~~d~~~g~l~v~~~D~~~~~ 126 (335)
.+|..| ++-=+.++++|.. ..+||.+|..+-+ ++.. ....|. .+.|+ ++.+...+-|++..+....
T Consensus 85 ~fpt~IL~VrmNr~RLvV~L-ee~IyIydI~~Mk----lLhT--I~t~~~----n~~gl~AlS~n~~n~ylAyp~s~t~- 152 (391)
T KOG2110|consen 85 FFPTSILAVRMNRKRLVVCL-EESIYIYDIKDMK----LLHT--IETTPP----NPKGLCALSPNNANCYLAYPGSTTS- 152 (391)
T ss_pred ecCCceEEEEEccceEEEEE-cccEEEEecccce----eehh--hhccCC----CccceEeeccCCCCceEEecCCCCC-
Confidence 466444 4444456777774 4459999864333 1221 111211 33433 3333344556654433221
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc--cCCcEEEEecCCccccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG--VEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d--~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
+.|+.||..+-+....++. . ......++|+++|.+..|-+..|+|.|+= ++|+.+..|+++.. .
T Consensus 153 -GdV~l~d~~nl~~v~~I~a----H-~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------~ 218 (391)
T KOG2110|consen 153 -GDVVLFDTINLQPVNTINA----H-KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------P 218 (391)
T ss_pred -ceEEEEEcccceeeeEEEe----c-CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------e
Confidence 4699999877655533332 1 24456799999999999999999887753 56776665544322 1
Q ss_pred cccCeEEEccCCeEEEEECCCCEEEEEeCCC
Q 039428 205 FGLNGIVYHPDGFLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~ 235 (335)
.....|+|++|+..+.+.+.++.|..|.++.
T Consensus 219 ~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 219 VSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 3477899999998777777888888887765
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.011 Score=36.66 Aligned_cols=41 Identities=29% Similarity=0.374 Sum_probs=31.8
Q ss_pred cCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc
Q 039428 214 PDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL 260 (335)
Q Consensus 214 ~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d 260 (335)
||+ +||+++...++|..+|+...+ ....+.. | ..|.+|+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~-~~~~i~v-g----~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK-VIATIPV-G----GYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe-EEEEEEC-C----CCCceEEeC
Confidence 466 899999999999999997764 5556665 4 248999874
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.31 Score=45.95 Aligned_cols=153 Identities=17% Similarity=0.152 Sum_probs=85.7
Q ss_pred EeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEcc-CCcE
Q 039428 108 VDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGV-EGQL 186 (335)
Q Consensus 108 ~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~-~g~~ 186 (335)
++ .++++|+...| ..|+.+|++++..++...... .....++-.+..+|++|+++... .++.+|. +|..
T Consensus 65 ~~-~dg~v~~~~~~------G~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~i~~g~~~g-~~y~ld~~~G~~ 133 (370)
T COG1520 65 AD-GDGTVYVGTRD------GNIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGKIYVGSWDG-KLYALDASTGTL 133 (370)
T ss_pred Ee-eCCeEEEecCC------CcEEEEeCCCCcEEecccCcC---cceeccCceEEeCCeEEEecccc-eEEEEECCCCcE
Confidence 44 37999995332 259999999998776554422 12344444455599999987654 8999999 6776
Q ss_pred EEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEE
Q 039428 187 LSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLV 266 (335)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~ 266 (335)
........ . .. -.+-++-.++.+|+.. .++.++.++.+.++ ....+............... ..++.+|
T Consensus 134 ~W~~~~~~-~-------~~-~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~-~~W~~~~~~~~~~~~~~~~~-~~~~~vy 201 (370)
T COG1520 134 VWSRNVGG-S-------PY-YASPPVVGDGTVYVGT-DDGHLYALNADTGT-LKWTYETPAPLSLSIYGSPA-IASGTVY 201 (370)
T ss_pred EEEEecCC-C-------eE-EecCcEEcCcEEEEec-CCCeEEEEEccCCc-EEEEEecCCccccccccCce-eecceEE
Confidence 55322111 0 01 1122344477888776 67889999988663 22222221100011122222 4567788
Q ss_pred EEecC-CCeEEEEEcCCC
Q 039428 267 VAGNP-YPSARLVESSDG 283 (335)
Q Consensus 267 va~~~-~~~~~v~~~~~~ 283 (335)
+.... ...+.-++..+|
T Consensus 202 ~~~~~~~~~~~a~~~~~G 219 (370)
T COG1520 202 VGSDGYDGILYALNAEDG 219 (370)
T ss_pred EecCCCcceEEEEEccCC
Confidence 87441 123444555444
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.22 Score=47.13 Aligned_cols=165 Identities=18% Similarity=0.159 Sum_probs=100.9
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeee------eEEeecCCcCCCCcceEEEeCC--CCeEEEEEecCC
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEE------VKLVKEDDVVGNATMGIAVDRP--RNRLLVAFTDVL 123 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~------~~~~~~~~~~~~~p~Gi~~d~~--~g~l~v~~~D~~ 123 (335)
..+.+..+|.+++.+..++.|..|+.- .- +.. .++..+.+.. -....+.++.. +.+||-++.|
T Consensus 127 TcL~fs~dgs~iiTgskDg~V~vW~l~-~l-----v~a~~~~~~~p~~~f~~Ht-lsITDl~ig~Gg~~~rl~TaS~D-- 197 (476)
T KOG0646|consen 127 TCLKFSDDGSHIITGSKDGAVLVWLLT-DL-----VSADNDHSVKPLHIFSDHT-LSITDLQIGSGGTNARLYTASED-- 197 (476)
T ss_pred eEEEEeCCCcEEEecCCCccEEEEEEE-ee-----cccccCCCccceeeeccCc-ceeEEEEecCCCccceEEEecCC--
Confidence 577888888888888888988888631 11 000 0010111100 12355555532 4577776554
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE--EE-EecCCcccc---
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL--LS-IIRSPLFTA--- 197 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~--~~-~~~~~~~~~--- 197 (335)
..+..||...+.++..+.+ ...++.+++||.++..+..+..|.|+.++..+.. .. +.. ..+..
T Consensus 198 ----~t~k~wdlS~g~LLlti~f------p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~-k~~~~~~t 266 (476)
T KOG0646|consen 198 ----RTIKLWDLSLGVLLLTITF------PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQ-KGRHEENT 266 (476)
T ss_pred ----ceEEEEEeccceeeEEEec------CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccc-cccccccc
Confidence 3688999999988765555 3457789999987644445677899988754321 00 000 00000
Q ss_pred --ccccc--cccccCeEEEccCCeEEEEECCCCEEEEEeCCCC
Q 039428 198 --KEWYK--NVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 198 --~~~~~--~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
+...+ .......++++-||+|.++-..+|+|-+.|+.+.
T Consensus 267 ~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 267 QINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred eeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 00011 1124678999999999999999999999999875
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.59 Score=47.42 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=104.5
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d 181 (335)
....++++. =|++-+. +-.. +.|-+|+..+|-...... ..+.. .....|+++|.-+++.|+....|-+.-+|
T Consensus 450 ~~~av~vs~-CGNF~~I-G~S~----G~Id~fNmQSGi~r~sf~-~~~ah-~~~V~gla~D~~n~~~vsa~~~Gilkfw~ 521 (910)
T KOG1539|consen 450 NATAVCVSF-CGNFVFI-GYSK----GTIDRFNMQSGIHRKSFG-DSPAH-KGEVTGLAVDGTNRLLVSAGADGILKFWD 521 (910)
T ss_pred ceEEEEEec-cCceEEE-eccC----CeEEEEEcccCeeecccc-cCccc-cCceeEEEecCCCceEEEccCcceEEEEe
Confidence 567788886 4444332 2222 349999999986552221 11111 35568999999999999988888888888
Q ss_pred cCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC
Q 039428 182 VEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS 261 (335)
Q Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~ 261 (335)
-+.+... ++ .. -...+.+|......-+++...+.=+|..+|....+ .++.+...+ +.-..+++.+
T Consensus 522 f~~k~l~--~~--l~------l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-vvR~f~gh~----nritd~~FS~ 586 (910)
T KOG1539|consen 522 FKKKVLK--KS--LR------LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-VVREFWGHG----NRITDMTFSP 586 (910)
T ss_pred cCCccee--ee--ec------cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh-hhHHhhccc----cceeeeEeCC
Confidence 7766532 11 11 12347788887766666666677789999988764 444443223 3367899999
Q ss_pred CCcEEEEecCCCeEEEEEcCCC
Q 039428 262 PTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 262 ~g~l~va~~~~~~~~v~~~~~~ 283 (335)
||++.++......+++.+...+
T Consensus 587 DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 587 DGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred CCcEEEEeecCCcEEEEeccCc
Confidence 9997777665577999887754
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.6 Score=46.21 Aligned_cols=192 Identities=16% Similarity=0.139 Sum_probs=111.4
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
..-|+++|.+. .++|....+|.|.+||..+++ . ... -...++....|++.+.+..+-|. +|. +
T Consensus 70 rsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk-------~--~~~-~d~~gg~IWsiai~p~~~~l~Ig-cdd-----G 132 (691)
T KOG2048|consen 70 RSIESLAWAEG-GRLFSSGLSGSITEWDLHTLK-------Q--KYN-IDSNGGAIWSIAINPENTILAIG-CDD-----G 132 (691)
T ss_pred CceeeEEEccC-CeEEeecCCceEEEEecccCc-------e--eEE-ecCCCcceeEEEeCCccceEEee-cCC-----c
Confidence 35699999954 556666679999999975444 1 111 11123466889999866666664 343 2
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCC--cccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSP--LFTAKEWYKNVF 205 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~--~~~~~~~~~~~~ 205 (335)
.++-++...+++.+...+.- + ..+.-.++.+++|.-.++.+..+.|..+|.... .......+ ..... ...
T Consensus 133 vl~~~s~~p~~I~~~r~l~r--q-~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~----~~~ 205 (691)
T KOG2048|consen 133 VLYDFSIGPDKITYKRSLMR--Q-KSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR----EPT 205 (691)
T ss_pred eEEEEecCCceEEEEeeccc--c-cceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccC----Cce
Confidence 36666666677765555532 1 467778999999986778888899999997643 32211110 11110 011
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEec
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGN 270 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~ 270 (335)
-.-++.+-.|+.|.-.| ..|.|.-.|...+. ..+.+.... +-.-.|++++++ .+++++.
T Consensus 206 iVWSv~~Lrd~tI~sgD-S~G~V~FWd~~~gT-LiqS~~~h~----adVl~Lav~~~~d~vfsaGv 265 (691)
T KOG2048|consen 206 IVWSVLFLRDSTIASGD-SAGTVTFWDSIFGT-LIQSHSCHD----ADVLALAVADNEDRVFSAGV 265 (691)
T ss_pred EEEEEEEeecCcEEEec-CCceEEEEcccCcc-hhhhhhhhh----cceeEEEEcCCCCeEEEccC
Confidence 13445555566655554 46677777766542 222222211 224567777775 4555544
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.036 Score=53.79 Aligned_cols=142 Identities=18% Similarity=0.174 Sum_probs=85.6
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEcc
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGV 182 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~ 182 (335)
...+.+|. +|++||++.| .+.+||..+++.......+. -...+.+..|..|++||... ..|++.++
T Consensus 167 V~aLv~D~-~g~lWvgT~d-------GL~~fd~~~gkalql~s~~~----dk~I~al~~d~qg~LWVGTd--qGv~~~e~ 232 (671)
T COG3292 167 VVALVFDA-NGRLWVGTPD-------GLSYFDAGRGKALQLASPPL----DKAINALIADVQGRLWVGTD--QGVYLQEA 232 (671)
T ss_pred ceeeeeec-cCcEEEecCC-------cceEEccccceEEEcCCCcc----hhhHHHHHHHhcCcEEEEec--cceEEEch
Confidence 47788885 8999996432 49999998887764322210 13456788889999999743 46888988
Q ss_pred CCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCC
Q 039428 183 EGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSP 262 (335)
Q Consensus 183 ~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~ 262 (335)
.|....-.+. .+. ....+-+.-|.+|++|+..... ++|.....+ .++.-...-........++..|.+
T Consensus 233 ~G~~~sn~~~-~lp-------~~~I~ll~qD~qG~lWiGTenG--l~r~~l~rq--~Lq~~~~~~~l~~S~vnsL~~D~d 300 (671)
T COG3292 233 EGWRASNWGP-MLP-------SGNILLLVQDAQGELWIGTENG--LWRTRLPRQ--GLQIPLSKMHLGVSTVNSLWLDTD 300 (671)
T ss_pred hhccccccCC-CCc-------chheeeeecccCCCEEEeeccc--ceeEecCCC--CccccccccCCccccccceeeccC
Confidence 8844332211 111 1124555566678999986443 343333333 111111110011344578899999
Q ss_pred CcEEEEec
Q 039428 263 TKLVVAGN 270 (335)
Q Consensus 263 g~l~va~~ 270 (335)
|.||+..+
T Consensus 301 GsLWv~t~ 308 (671)
T COG3292 301 GSLWVGTY 308 (671)
T ss_pred CCEeeecc
Confidence 99999966
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.75 Score=45.67 Aligned_cols=197 Identities=12% Similarity=0.038 Sum_probs=98.8
Q ss_pred CCCEEEEEecC------CeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 59 VGRRFLVSFLD------GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 59 ~g~~~~~~~~~------~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
++.+|+++... ..++++|+.+.. |...+.+.. ..-.+++.- ++.||+..+-......+.+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~----------W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~ 361 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKS----------WNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVE 361 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCe----------eeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEE
Confidence 45566666221 368899854332 433343321 223455554 68899974322111124688
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC------CCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV------SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~------~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
+||+.+++-....+.+.+ ... ..++--+|++||.... ...++++|+....-.... .+ | ...
T Consensus 362 ~yd~~~~~W~~~~~lp~~---r~~--~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~--p----~~r 428 (534)
T PHA03098 362 SWKPGESKWREEPPLIFP---RYN--PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS--PL--P----ISH 428 (534)
T ss_pred EEcCCCCceeeCCCcCcC---Ccc--ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC--CC--C----ccc
Confidence 999988755433222111 111 1222246789997542 257899998754332111 11 1 011
Q ss_pred ccCeEEEccCCeEEEEECC--------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC-----C
Q 039428 206 GLNGIVYHPDGFLIVIHMC--------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP-----Y 272 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~--------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~-----~ 272 (335)
.-.+.+. -++.||+.... ...++++|+..+ ....+.... ..-. -.+++. -++++||.+.. .
T Consensus 429 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~-~~r~-~~~~~~-~~~~iyv~GG~~~~~~~ 502 (534)
T PHA03098 429 YGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTN--KWTELSSLN-FPRI-NASLCI-FNNKIYVVGGDKYEYYI 502 (534)
T ss_pred cCceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCC--ceeeCCCCC-cccc-cceEEE-ECCEEEEEcCCcCCccc
Confidence 1223333 36789886532 134899999887 444443111 0001 123333 36789998542 2
Q ss_pred CeEEEEEcCCC-cEE
Q 039428 273 PSARLVESSDG-WET 286 (335)
Q Consensus 273 ~~~~v~~~~~~-~~~ 286 (335)
+.+.+++...+ |..
T Consensus 503 ~~v~~yd~~~~~W~~ 517 (534)
T PHA03098 503 NEIEVYDDKTNTWTL 517 (534)
T ss_pred ceeEEEeCCCCEEEe
Confidence 34566665544 643
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.57 Score=45.00 Aligned_cols=178 Identities=14% Similarity=0.180 Sum_probs=100.8
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.+.-++-.. +. +++....+.|.+-... ..+ .. .....+ ....|++..| ...+|++.+. + ..
T Consensus 331 ~iRtv~e~~-~d-i~vGTtrN~iL~Gt~~-~~f-----~~--~v~gh~---delwgla~hp-s~~q~~T~gq---d--k~ 391 (626)
T KOG2106|consen 331 PIRTVAEGK-GD-ILVGTTRNFILQGTLE-NGF-----TL--TVQGHG---DELWGLATHP-SKNQLLTCGQ---D--KH 391 (626)
T ss_pred CeeEEecCC-Cc-EEEeeccceEEEeeec-CCc-----eE--EEEecc---cceeeEEcCC-ChhheeeccC---c--ce
Confidence 344444332 33 6666556777777643 332 10 111111 2456999998 5666664321 2 24
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
+..|+ ..++++...+..+. .-+.|+|.| .....+..|+..++|.+.+....+... . ...+-
T Consensus 392 v~lW~--~~k~~wt~~~~d~~------~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d--~--------~~ls~ 452 (626)
T KOG2106|consen 392 VRLWN--DHKLEWTKIIEDPA------ECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD--N--------EQLSV 452 (626)
T ss_pred EEEcc--CCceeEEEEecCce------eEeeccCcc-eEEEeeccceEEEEecccceeEEEEec--C--------CceEE
Confidence 77777 56677665553332 347788888 666678888999998876554433221 1 12678
Q ss_pred EEEccCCeEEEEECCCCEE--EEEeCCCCceeEEEEe-ccCCcCCCCCCeEEEcCCCcEEEEecC
Q 039428 210 IVYHPDGFLIVIHMCSGNL--FKIDIRKEEEEVKLIE-LRGGSSLSLGDGLALLSPTKLVVAGNP 271 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v--~~~d~~~~~~~~~~~~-~~g~~~~~~pdGia~d~~g~l~va~~~ 271 (335)
+.++|||..+.--+.++.| ||++.++. ....+. ..| ..-.-+.+.+|++.++++.+
T Consensus 453 v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~--~y~r~~k~~g----s~ithLDwS~Ds~~~~~~S~ 511 (626)
T KOG2106|consen 453 VRYSPDGAFLAVGSHDNHIYIYRVSANGR--KYSRVGKCSG----SPITHLDWSSDSQFLVSNSG 511 (626)
T ss_pred EEEcCCCCEEEEecCCCeEEEEEECCCCc--EEEEeeeecC----ceeEEeeecCCCceEEeccC
Confidence 9999999555444556654 55555554 222222 122 22355666777787777663
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.56 Score=45.21 Aligned_cols=159 Identities=18% Similarity=0.197 Sum_probs=89.9
Q ss_pred CcceeeeEEcCCCCE-EEEEecC---CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC
Q 039428 48 SFLCETAKWDDVGRR-FLVSFLD---GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 48 ~~~pegia~d~~g~~-~~~~~~~---~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
......++|.+++.. .|++... .+|++++...+.. + .....++. -....+.|++..|..+ .+..
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-----~--~i~~~~g~----~~~P~fspDG~~l~f~-~~rd 259 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-----P--VILNFNGN----NGAPAFSPDGSKLAFS-SSRD 259 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-----c--eeeccCCc----cCCccCCCCCCEEEEE-ECCC
Confidence 445678899999874 4444332 3599998765552 1 13333332 2344566644444443 3332
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc--EEEEeCC-CCeEEEEccCCcEEEEecCCccccccc
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN--AYVTDVV-SSKIWKVGVEGQLLSIIRSPLFTAKEW 200 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~--lyV~d~~-~~~I~~~d~~g~~~~~~~~~~~~~~~~ 200 (335)
+. ..|+.+|..++.+....+.. ..-..-.+.|||+ +|++|.. ...|++.+++|+..+.+. +.
T Consensus 260 g~--~~iy~~dl~~~~~~~Lt~~~------gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT---~~---- 324 (425)
T COG0823 260 GS--PDIYLMDLDGKNLPRLTNGF------GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT---FS---- 324 (425)
T ss_pred CC--ccEEEEcCCCCcceecccCC------ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee---cc----
Confidence 32 46999999988744322221 1112455678986 5556643 569999999988655321 11
Q ss_pred cccccccCeEEEccCC-eEEEEECCCCE--EEEEeCCCC
Q 039428 201 YKNVFGLNGIVYHPDG-FLIVIHMCSGN--LFKIDIRKE 236 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg-~Lyvad~~~~~--v~~~d~~~~ 236 (335)
..+...-.++||| ++.+.....++ |...++..+
T Consensus 325 ---~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 325 ---GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred ---CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 1123355789999 55444443455 666676665
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.22 Score=46.58 Aligned_cols=196 Identities=14% Similarity=0.091 Sum_probs=117.9
Q ss_pred eeeeEEcCCCCEEEEEecC--CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 51 CETAKWDDVGRRFLVSFLD--GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~--~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
-+=+.++++|..+..+..+ ..|+.+. .++++ ++.. +..... ....-|..+|++..|..|..| .
T Consensus 227 VWfl~FS~nGkyLAsaSkD~Taiiw~v~-~d~~~--kl~~--tlvgh~----~~V~yi~wSPDdryLlaCg~~------e 291 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASASKDSTAIIWIVV-YDVHF--KLKK--TLVGHS----QPVSYIMWSPDDRYLLACGFD------E 291 (519)
T ss_pred EEEEEEcCCCeeEeeccCCceEEEEEEe-cCcce--eeee--eeeccc----CceEEEEECCCCCeEEecCch------H
Confidence 4567788888654444443 3466775 45552 1111 122111 245678889855555554332 2
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
.+..+|..+|.......- +. ...+...+--|||.-+|+.+....|+.+|.||+....++... .....
T Consensus 292 ~~~lwDv~tgd~~~~y~~---~~-~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr---------~~~v~ 358 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPS---GL-GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR---------DPKVH 358 (519)
T ss_pred heeeccCCcchhhhhccc---Cc-CCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc---------cceeE
Confidence 388899999876633221 11 245556777899988999999999999999998765443211 12367
Q ss_pred eEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 209 GIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 209 Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.+++++|| +++... ...+|..++..... ....+... ..-.-+.+..+|++.+.+-..+.+...+..
T Consensus 359 dlait~Dgk~vl~v~-~d~~i~l~~~e~~~-dr~lise~-----~~its~~iS~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVT-VDKKIRLYNREARV-DRGLISEE-----QPITSFSISKDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred EEEEcCCCcEEEEEe-cccceeeechhhhh-hhcccccc-----CceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence 89999999 666554 45556666655431 11123211 224567888888888886544566666654
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.17 Score=43.23 Aligned_cols=118 Identities=20% Similarity=0.268 Sum_probs=74.0
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEE-eCCCCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVT-DVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~-d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
.|+.++....... .+.+.. .....+++..|+|+ +.|. ......|..+|.+++.+..++. ..
T Consensus 40 ~l~~~~~~~~~~~-~i~l~~----~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~------------~~ 102 (194)
T PF08662_consen 40 ELFYLNEKNIPVE-SIELKK----EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGT------------QP 102 (194)
T ss_pred EEEEEecCCCccc-eeeccC----CCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecC------------CC
Confidence 4777765543322 222211 12367899999996 3333 3445688899988766553321 23
Q ss_pred cCeEEEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 207 LNGIVYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 207 p~Gia~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
.|.|.++|+| .|.++..+ +|.|..+|.+..+ .+.... . .....++.+|+|+.+++..
T Consensus 103 ~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~-~i~~~~----~--~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 103 RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK-KISTFE----H--SDATDVEWSPDGRYLATAT 162 (194)
T ss_pred ceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE-Eeeccc----c--CcEEEEEEcCCCCEEEEEE
Confidence 6889999999 56666544 5789999988652 222222 1 2357899999999777743
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.36 E-value=1.2 Score=44.17 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=62.4
Q ss_pred CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC---------CCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 61 RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG---------NATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 61 ~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~---------~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
+++|+....+.|+.+|..+|+. + |........ ....|+++. ++++|+.+.| ..|+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~----l----W~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~d------g~l~ 133 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKE----L----WKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLD------ARLV 133 (527)
T ss_pred CEEEEECCCCcEEEEECCCCce----e----eEecCCCCcccccccccccccccceEE--CCEEEEEcCC------CEEE
Confidence 4556665567899999766651 1 321111100 012466776 5889995433 3599
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC-----CCCeEEEEccC-CcEEE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-----VSSKIWKVGVE-GQLLS 188 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-----~~~~I~~~d~~-g~~~~ 188 (335)
.+|.++|++.+..................+ .+|.+||..+ ..+.|+.+|.+ |+.+.
T Consensus 134 ALDa~TGk~~W~~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 134 ALDAKTGKVVWSKKNGDYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred EEECCCCCEEeecccccccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 999999999876554221110011111222 1567888643 25789999986 44443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.83 Score=41.47 Aligned_cols=196 Identities=12% Similarity=0.146 Sum_probs=116.8
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
.+++.+.+-|.++.++..+|+|..+|.. +..+ . ++++..- .....++.++ +|+..++.. . + ..+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~-T~~i----a--r~lsaH~---~pi~sl~WS~-dgr~LltsS-~--D--~si 89 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFD-TFRI----A--RMLSAHV---RPITSLCWSR-DGRKLLTSS-R--D--WSI 89 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcc-ccch----h--hhhhccc---cceeEEEecC-CCCEeeeec-C--C--cee
Confidence 7899999999998888889999999853 3311 1 1222211 2347889986 777777532 1 1 459
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCC--CeEEEEccCCcEEEEecCCccccccccccc-cc
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVS--SKIWKVGVEGQLLSIIRSPLFTAKEWYKNV-FG 206 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~--~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~-~~ 206 (335)
..||...|.....+.++. ..++....|. .|..|+.... ..+..++. ++ ..++.. .++ .+. ..
T Consensus 90 ~lwDl~~gs~l~rirf~s------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~-~~-h~~Lp~----d~d--~dln~s 155 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIRFDS------PVWGAQWHPRKRNKCVATIMEESPVVIDFSD-PK-HSVLPK----DDD--GDLNSS 155 (405)
T ss_pred EEEeccCCCceeEEEccC------ccceeeeccccCCeEEEEEecCCcEEEEecC-Cc-eeeccC----CCc--cccccc
Confidence 999998887665555532 2345666664 5666665443 33334433 22 222211 000 001 12
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
+....+++.|..+++-+..|++..++..+.+ .+..+.+.. ....--+.+...|+.++.|....-+|++..
T Consensus 156 as~~~fdr~g~yIitGtsKGkllv~~a~t~e-~vas~rits---~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 156 ASHGVFDRRGKYIITGTSKGKLLVYDAETLE-CVASFRITS---VQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred cccccccCCCCEEEEecCcceEEEEecchhe-eeeeeeech---heeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 3334789999666677789999999998763 333443321 122456778778887777664344565554
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.013 Score=36.40 Aligned_cols=33 Identities=9% Similarity=-0.139 Sum_probs=29.2
Q ss_pred ccccCeEEEccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 204 VFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
...|+||++++.+ .||.+|...+.|.+.+.++.
T Consensus 8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 3459999999977 99999999999999998874
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.63 Score=46.67 Aligned_cols=187 Identities=14% Similarity=0.103 Sum_probs=106.7
Q ss_pred eeeEEcCCCCEEEEEecC------CeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecCCC
Q 039428 52 ETAKWDDVGRRFLVSFLD------GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDVLG 124 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~------~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~ 124 (335)
.++++- +|.+|+++..+ .++.++|+. .. +|...+.+.- +.-.|+++- +|.|||+.+-.+.
T Consensus 326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~-~~---------~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~ 392 (571)
T KOG4441|consen 326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPR-TN---------QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGE 392 (571)
T ss_pred ccEEEE-CCEEEEEccccCCCcccceEEEecCC-CC---------ceeccCCccCccccceeEEE--CCEEEEEeccccc
Confidence 455554 45677777333 578999864 43 1655454432 344677776 7999997432221
Q ss_pred CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC------CCeEEEEccCCcEEEEecCCccccc
Q 039428 125 NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV------SSKIWKVGVEGQLLSIIRSPLFTAK 198 (335)
Q Consensus 125 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~------~~~I~~~d~~g~~~~~~~~~~~~~~ 198 (335)
.....+-+||+.+.+-....+... ...-.+++ --+|.+|+.... -..+.++||..+.-+.+ +.+.
T Consensus 393 ~~l~svE~YDp~~~~W~~va~m~~----~r~~~gv~-~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~--~~M~-- 463 (571)
T KOG4441|consen 393 KSLNSVECYDPVTNKWTPVAPMLT----RRSGHGVA-VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI--APMN-- 463 (571)
T ss_pred cccccEEEecCCCCcccccCCCCc----ceeeeEEE-EECCEEEEEcCcCCCccccceEEEEcCCCCceeec--CCcc--
Confidence 122468899999876543332211 01111222 247899998642 26788999986654321 1111
Q ss_pred cccccccccCeEEEccCCeEEEEECCC-----CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 199 EWYKNVFGLNGIVYHPDGFLIVIHMCS-----GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg~Lyvad~~~-----~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
....-.|++.- ++.||+.-..+ .+|.++|+... ....+..-. . -...-|++.. ++.+|+.+.
T Consensus 464 ----~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~--~W~~v~~m~-~-~rs~~g~~~~-~~~ly~vGG 530 (571)
T KOG4441|consen 464 ----TRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETN--QWTMVAPMT-S-PRSAVGVVVL-GGKLYAVGG 530 (571)
T ss_pred ----cccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCC--ceeEcccCc-c-ccccccEEEE-CCEEEEEec
Confidence 12234566766 88999875543 35899999987 555553111 1 1224466665 478898843
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.23 Score=45.10 Aligned_cols=198 Identities=13% Similarity=0.114 Sum_probs=116.8
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCCCCcceeee-eEEee-cCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEE
Q 039428 57 DDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEE-VKLVK-EDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYD 134 (335)
Q Consensus 57 d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~-~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d 134 (335)
.|+.++|.++..+.-|+.||.-+|+ +.. .+... ..+. ...+.+.++++...||+ +.. ..|.+||
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~-----lraSy~~ydh~de~--taAhsL~Fs~DGeqlfa--Gyk-----rcirvFd 185 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGK-----LRASYRAYDHQDEY--TAAHSLQFSPDGEQLFA--GYK-----RCIRVFD 185 (406)
T ss_pred CCccceeeeccccCceeeeeccccc-----cccchhhhhhHHhh--hhheeEEecCCCCeEee--ccc-----ceEEEee
Confidence 6788888888888899999976665 110 00010 0122 25688999986666777 332 5799999
Q ss_pred C-CCCeEEEEee-c-C-CCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCc-EEEEecCCccccccccccccccC
Q 039428 135 L-STWKRLFLTQ-L-S-GKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 135 ~-~~~~~~~~~~-~-~-~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
. +.|.-..... + . ..++ .....-+++.|-. ..+...++..++-.+.-++. ...+++ +...+..
T Consensus 186 t~RpGr~c~vy~t~~~~k~gq-~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg----------gh~gGvT 254 (406)
T KOG2919|consen 186 TSRPGRDCPVYTTVTKGKFGQ-KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG----------GHGGGVT 254 (406)
T ss_pred ccCCCCCCcchhhhhcccccc-cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec----------ccCCCee
Confidence 8 4553221111 1 0 1111 2344557777754 46666677666655555543 222221 1334678
Q ss_pred eEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeE--EEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 209 GIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGL--ALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 209 Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGi--a~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
-+.+.+|| +||+......+|...|+..-+ --++.+.+ .--..-.-| .+|+.|++.+++..++.|+|.+..+
T Consensus 255 hL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~pv~~L~r-hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 255 HLQWCEDGNKLFSGARKDDKILCWDIRYSR--DPVYALER-HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred eEEeccCcCeecccccCCCeEEEEeehhcc--chhhhhhh-hccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 89999999 899998889999999998642 11222211 100011234 4457789888865567788888754
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.2 Score=42.52 Aligned_cols=209 Identities=19% Similarity=0.167 Sum_probs=103.4
Q ss_pred cceeeeEEcCCCCEEEEEecC------CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 49 FLCETAKWDDVGRRFLVSFLD------GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~------~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
..|..+-.-|+|++++..+.+ +.+..+|. ++- ++.. .|-...+ .......+-+.+ +.++.|++ ..
T Consensus 130 s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~-~tf---~v~g--~We~~~~-~~~~gYDfw~qp-r~nvMiSS-eW 200 (461)
T PF05694_consen 130 SRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDG-ETF---EVKG--RWEKDRG-PQPFGYDFWYQP-RHNVMISS-EW 200 (461)
T ss_dssp EEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-T-TT-----EEE--E--SB-T-T------EEEET-TTTEEEE--B-
T ss_pred CCCceeeecCCccEEEEeccCCCCCCCCcEEEEcC-ccc---cccc--eeccCCC-CCCCCCCeEEcC-CCCEEEEe-cc
Confidence 468888889999988887422 57999973 332 1222 2421111 101235666777 56676754 22
Q ss_pred CC-----------C-----ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeEC--CCC-cEEEEeCCCCeEEEEcc-
Q 039428 123 LG-----------N-----KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVD--AEG-NAYVTDVVSSKIWKVGV- 182 (335)
Q Consensus 123 ~~-----------~-----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd--~~G-~lyV~d~~~~~I~~~d~- 182 (335)
.. + =.+.|..||.++++++..+++... ...|-.+.+. |+- .-||.-..+..||+|-.
T Consensus 201 g~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~---g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~ 277 (461)
T PF05694_consen 201 GAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE---GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKD 277 (461)
T ss_dssp --HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT---EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-
T ss_pred CChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC---CCceEEEEecCCCCccceEEEEeccceEEEEEEc
Confidence 20 0 025799999999999988888432 2355566664 443 47888778899999876
Q ss_pred -CCcE--EEEecCC------ccccccc----cccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCce--eEEEEecc
Q 039428 183 -EGQL--LSIIRSP------LFTAKEW----YKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEE--EVKLIELR 246 (335)
Q Consensus 183 -~g~~--~~~~~~~------~~~~~~~----~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~--~~~~~~~~ 246 (335)
+|+. ..++.-+ +.. |.. .....-+.-|-++.|. +|||++...|.|..+|+..... .+..+.+.
T Consensus 278 ~~g~W~a~kVi~ip~~~v~~~~l-p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lG 356 (461)
T PF05694_consen 278 DDGEWAAEKVIDIPAKKVEGWIL-PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLG 356 (461)
T ss_dssp ETTEEEEEEEEEE--EE--SS----GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-B
T ss_pred CCCCeeeeEEEECCCcccCcccc-cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEEC
Confidence 3432 1222111 110 000 0001236788899888 9999999999999999988531 23333333
Q ss_pred CC------------cCCCCCCeEEEcCCC-cEEEEec
Q 039428 247 GG------------SSLSLGDGLALLSPT-KLVVAGN 270 (335)
Q Consensus 247 g~------------~~~~~pdGia~d~~g-~l~va~~ 270 (335)
|. ..-++|.=+.+.-|| +|||+++
T Consensus 357 G~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 357 GSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp TTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred cEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 21 112457778888888 7999965
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.9 Score=44.29 Aligned_cols=199 Identities=17% Similarity=0.246 Sum_probs=116.9
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCC-CCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDE-YSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g-~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
-..++|+++|+.++++..++.|.+|+.... ..| ..+.. .+....+++.. .+++.+++.+ +.
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-------~ti~~---~g~~v~~ia~~--s~~f~~~s~~------~t 77 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-------ETIDI---SGELVSSIACY--SNHFLTGSEQ------NT 77 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-------chhhc---cCceeEEEeec--ccceEEeecc------ce
Confidence 468999999997777778899999974322 111 01110 12245677776 3555554322 35
Q ss_pred EEEEECCCCeEE-EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCcccccccccccccc
Q 039428 130 LAAYDLSTWKRL-FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 130 v~~~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
|.+|....++.- ....+. ...++++|+.+|+..++.+..-.|-.++.+. .....+.. .. ...
T Consensus 78 v~~y~fps~~~~~iL~Rft------lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg--h~--------apV 141 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTILARFT------LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG--HD--------APV 141 (933)
T ss_pred EEEeeCCCCCccceeeeee------ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc--cC--------Cce
Confidence 777776655432 122221 2236899999999888877777787777653 23222211 11 125
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEe-ccC--CcCCCC-CCeEEEcCC-CcEEEEecCCCeEEEEEcCC
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIE-LRG--GSSLSL-GDGLALLSP-TKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~-~~g--~~~~~~-pdGia~d~~-g~l~va~~~~~~~~v~~~~~ 282 (335)
-++.++|.+.+.+..+.+|+|+.+++..+. ....+. +.. +..... -.=+++.|+ |++.+... .+.+.+++- .
T Consensus 142 l~l~~~p~~~fLAvss~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~-d~~Vkvy~r-~ 218 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAVSSCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV-DNTVKVYSR-K 218 (933)
T ss_pred eeeeEcCCCCEEEEEecCceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCCCCeEEeecc-CCeEEEEcc-C
Confidence 789999999888777889999999998862 111111 000 010011 134677888 46666544 256776653 5
Q ss_pred CcEE
Q 039428 283 GWET 286 (335)
Q Consensus 283 ~~~~ 286 (335)
+|..
T Consensus 219 ~we~ 222 (933)
T KOG1274|consen 219 GWEL 222 (933)
T ss_pred Ccee
Confidence 5654
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.07 Score=49.60 Aligned_cols=186 Identities=13% Similarity=0.095 Sum_probs=122.6
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-.++|++|....|+..+.+++|..||....+ +| ..++.++ --+..+..+|..+.|.....| +.
T Consensus 182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~k------ee-~vL~GHg---wdVksvdWHP~kgLiasgskD------nl 245 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK------EE-RVLRGHG---WDVKSVDWHPTKGLIASGSKD------NL 245 (464)
T ss_pred hhheeccCCCCceeEEecCCCeEEEEeccCCc------hh-heeccCC---CCcceeccCCccceeEEccCC------ce
Confidence 34688999988888887999999999843222 23 2444443 246788888855655543222 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCccccccccccccccC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
|..||++++.-+..... . .+-...+.+.++|+...|-+....+.++|.... .+.. +. .......
T Consensus 246 VKlWDprSg~cl~tlh~----H-KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~-----~r-----~Hkkdv~ 310 (464)
T KOG0284|consen 246 VKLWDPRSGSCLATLHG----H-KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT-----YR-----GHKKDVT 310 (464)
T ss_pred eEeecCCCcchhhhhhh----c-cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH-----hh-----cchhhhe
Confidence 88899998865422211 1 455667899999999999898889999987621 1111 11 0122377
Q ss_pred eEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 209 GIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 209 Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
.++++|-. .|+++-...+.|+-......+ ....++- . . ......|+..|=|.+++++.
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~-p~~~i~~-A-H-d~~iwsl~~hPlGhil~tgs 369 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEE-PLGEIPP-A-H-DGEIWSLAYHPLGHILATGS 369 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccc-cccCCCc-c-c-ccceeeeeccccceeEeecC
Confidence 88999966 899999889998887776442 2222221 1 1 24467788889899988854
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.42 Score=43.03 Aligned_cols=188 Identities=14% Similarity=0.130 Sum_probs=107.3
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
.++-..+.-+.++.+.|+++|-.||+. ... . ..... .++....+.+. +++|.|...| ..+.
T Consensus 98 ~ci~~~~~~~~vIsgsWD~~ik~wD~R-~~~-----~---~~~~d--~~kkVy~~~v~--g~~LvVg~~~------r~v~ 158 (323)
T KOG1036|consen 98 RCIEYSYEVGCVISGSWDKTIKFWDPR-NKV-----V---VGTFD--QGKKVYCMDVS--GNRLVVGTSD------RKVL 158 (323)
T ss_pred EEEEeeccCCeEEEcccCccEEEEecc-ccc-----c---ccccc--cCceEEEEecc--CCEEEEeecC------ceEE
Confidence 456666666677777999999999953 331 0 11111 11244555553 6778774444 3599
Q ss_pred EEECCCCeEEEEeecCCCccCC-CCCCceeECCCCcEEEEeCCCCeEEEEccCCcE----EE-EecCCcccccccccccc
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEK-STADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL----LS-IIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~-~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~----~~-~~~~~~~~~~~~~~~~~ 205 (335)
.||++.....+...- ..+ ..-..++.-|++.-|++.+-.|||.+=..+... .+ .|.-..... .......
T Consensus 159 iyDLRn~~~~~q~re----S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~-~~~~~~y 233 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRRE----SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSE-KDTEIIY 233 (323)
T ss_pred EEEcccccchhhhcc----ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeeccc-CCceEEE
Confidence 999986543321111 113 234578888888889999999999986655431 11 111000000 1111223
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEE
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVA 268 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va 268 (335)
-.|.|+|+|-..-+++-...|.|...|+...| ....+. . . -...--++++.+|. |-++
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK-rl~q~~--~-~-~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK-RLKQLA--K-Y-ETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchh-hhhhcc--C-C-CCceEEEEeccCCCeEEEE
Confidence 37999999976555666678889999988764 332232 1 0 01133577777774 5555
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.096 Score=48.74 Aligned_cols=194 Identities=12% Similarity=0.149 Sum_probs=122.7
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..+.|.|+|+.+++...+|...-|+ . ..+ ..+ ..++..+ ....++.... +++-.| ++|.. ..|.
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWN-g-~~f---nFE--tilQaHD---s~Vr~m~ws~-~g~wmi-SgD~g----G~iK 163 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWN-G-TSF---NFE--TILQAHD---SPVRTMKWSH-NGTWMI-SGDKG----GMIK 163 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEec-C-cee---eHH--HHhhhhc---ccceeEEEcc-CCCEEE-EcCCC----ceEE
Confidence 5789999999999998888888885 2 221 011 0112222 2457888885 554444 45654 3577
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
.|++.=.-+... .. .......++++.|+..-|++-+..++|..+|.. .+..+++.. .+--+..+
T Consensus 164 yWqpnmnnVk~~-~a----hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G----------HgwdVksv 228 (464)
T KOG0284|consen 164 YWQPNMNNVKII-QA----HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG----------HGWDVKSV 228 (464)
T ss_pred ecccchhhhHHh-hH----hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc----------CCCCccee
Confidence 777753322211 10 002356789999998999999999999998864 333332211 12237889
Q ss_pred EEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 211 VYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 211 a~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.+.|...|+++-...+.|.-.|++++. .+-.+. + . -....++.+.+++++..+......+++++..
T Consensus 229 dWHP~kgLiasgskDnlVKlWDprSg~-cl~tlh--~-H-KntVl~~~f~~n~N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 229 DWHPTKGLIASGSKDNLVKLWDPRSGS-CLATLH--G-H-KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred ccCCccceeEEccCCceeEeecCCCcc-hhhhhh--h-c-cceEEEEEEcCCCCeeEEccCCceEEEEehh
Confidence 999988788777777778888888763 222221 1 1 1346788888989877776655667777754
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.033 Score=34.90 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=31.7
Q ss_pred CeEEEEECCCC-EEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC
Q 039428 216 GFLIVIHMCSG-NLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS 261 (335)
Q Consensus 216 g~Lyvad~~~~-~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~ 261 (335)
++||.+|...+ +|.+.+.++. ..+.+-... +..|.|+|+|+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs--~~~~vi~~~---l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGS--NRRTVISDD---LQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTST--SEEEEEESS---TSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCC--CeEEEEECC---CCCcCEEEECC
Confidence 47999999999 9999999997 433332222 67799999984
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.12 Score=49.44 Aligned_cols=189 Identities=11% Similarity=0.075 Sum_probs=112.4
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-..+|+++|.++.|.+..+|.|.+||..+.. + +-++.+.. .....|.+..++-+||-..-| +.
T Consensus 511 aCyALa~spDakvcFsccsdGnI~vwDLhnq~----~-----VrqfqGht-DGascIdis~dGtklWTGGlD------nt 574 (705)
T KOG0639|consen 511 ACYALAISPDAKVCFSCCSDGNIAVWDLHNQT----L-----VRQFQGHT-DGASCIDISKDGTKLWTGGLD------NT 574 (705)
T ss_pred hhhhhhcCCccceeeeeccCCcEEEEEcccce----e-----eecccCCC-CCceeEEecCCCceeecCCCc------cc
Confidence 34578899999999999889999999964332 1 22233322 245677787656789983222 46
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
|..||++.+......++. .....+-..|.|........++.++++...+...-.+.- .. .-.-.
T Consensus 575 vRcWDlregrqlqqhdF~------SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhl---he-------ScVLS 638 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHDFS------SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHL---HE-------SCVLS 638 (705)
T ss_pred eeehhhhhhhhhhhhhhh------hhheecccCCCccceeeecccCcEEEEecCCccceeecc---cc-------cEEEE
Confidence 999999877544333331 122234456777766666777888888776544322211 00 12456
Q ss_pred EEEccCCeEEEEECCCCEE--EEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEE
Q 039428 210 IVYHPDGFLIVIHMCSGNL--FKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLV 278 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v--~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~ 278 (335)
+.|.+-|.-||+...++-+ ||..... .+|.... ....--..+..|++++|++.+.....|+
T Consensus 639 lKFa~cGkwfvStGkDnlLnawrtPyGa-----siFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 639 LKFAYCGKWFVSTGKDNLLNAWRTPYGA-----SIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred EEecccCceeeecCchhhhhhccCcccc-----ceeeccc---cCcceeeeeccCceEEEecCCCcceEEE
Confidence 7888889888887666644 4433322 2333221 1223345556677888887754344443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.98 E-value=1.1 Score=41.29 Aligned_cols=198 Identities=11% Similarity=0.089 Sum_probs=118.8
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-.+++.+|.-++++.+..+..+.+||.. .+. . +....+.. +....+.+.+.+..+|-++.|. .
T Consensus 237 ~V~~L~lhPTldvl~t~grDst~RvWDiR-tr~-----~---V~~l~GH~-~~V~~V~~~~~dpqvit~S~D~------t 300 (460)
T KOG0285|consen 237 GVYCLDLHPTLDVLVTGGRDSTIRVWDIR-TRA-----S---VHVLSGHT-NPVASVMCQPTDPQVITGSHDS------T 300 (460)
T ss_pred eeEEEeccccceeEEecCCcceEEEeeec-ccc-----e---EEEecCCC-CcceeEEeecCCCceEEecCCc------e
Confidence 34678889888888888888889999853 431 1 22222221 2345677776678898876664 5
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc-cCCcEEEEecCCccccccccccccccC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG-VEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d-~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
|..||...|+......- . ......++..|+-++|.+.+. +.|-.++ |+|.+..- +.. .....|
T Consensus 301 vrlWDl~agkt~~tlt~--h---kksvral~lhP~e~~fASas~-dnik~w~~p~g~f~~n-----lsg-----h~~iin 364 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTH--H---KKSVRALCLHPKENLFASASP-DNIKQWKLPEGEFLQN-----LSG-----HNAIIN 364 (460)
T ss_pred EEEeeeccCceeEeeec--c---cceeeEEecCCchhhhhccCC-ccceeccCCccchhhc-----ccc-----ccceee
Confidence 99999988876532211 0 234556888898888887544 4566665 55655431 111 223467
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCce--eEEEEeccCCc-CCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcC
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEE--EVKLIELRGGS-SLSLGDGLALLSPTK-LVVAGNPYPSARLVESS 281 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~--~~~~~~~~g~~-~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~ 281 (335)
.++...|| +|++-..++.|+..|...+-. ..+.+..+|+- .-.+....++|..|. |+.++. ...|.+..-+
T Consensus 365 tl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ea-dKtIk~~keD 439 (460)
T KOG0285|consen 365 TLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEA-DKTIKMYKED 439 (460)
T ss_pred eeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccC-CcceEEEecc
Confidence 77777666 556777899999999988620 22223223311 012345567777774 444444 2456666543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.28 Score=48.97 Aligned_cols=182 Identities=13% Similarity=0.145 Sum_probs=110.5
Q ss_pred eEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEE
Q 039428 54 AKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAY 133 (335)
Q Consensus 54 ia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~ 133 (335)
++|+++|+++|+.. ++.|-.+|..++.. . .+.. .++-. .....+++++++..|+.+.. + ..+..|
T Consensus 25 ~~~s~nG~~L~t~~-~d~Vi~idv~t~~~-----~-l~s~-~~ed~-d~ita~~l~~d~~~L~~a~r---s---~llrv~ 89 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC-GDRVIIIDVATGSI-----A-LPSG-SNEDE-DEITALALTPDEEVLVTASR---S---QLLRVW 89 (775)
T ss_pred eeECCCCCEEEEec-CceEEEEEccCCce-----e-cccC-Cccch-hhhheeeecCCccEEEEeec---c---ceEEEE
Confidence 89999999998874 56788888655541 1 0121 11100 23468888886666666421 1 247789
Q ss_pred ECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEc
Q 039428 134 DLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYH 213 (335)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~ 213 (335)
++.++++....-. .. ....--+++||.|.+..+....+++.++|-.+..-.. .|.. .+.-...+.|.
T Consensus 90 ~L~tgk~irswKa--~H--e~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th----~fkG-----~gGvVssl~F~ 156 (775)
T KOG0319|consen 90 SLPTGKLIRSWKA--IH--EAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH----SFKG-----HGGVVSSLLFH 156 (775)
T ss_pred EcccchHhHhHhh--cc--CCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE----EecC-----CCceEEEEEeC
Confidence 9988866522111 00 1223469999999888888888999999988765441 2322 01115667788
Q ss_pred cCC--eEEEEECCCCEEEEEeCCCCceeEEEEe-ccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 214 PDG--FLIVIHMCSGNLFKIDIRKEEEEVKLIE-LRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 214 ~dg--~Lyvad~~~~~v~~~d~~~~~~~~~~~~-~~g~~~~~~pdGia~d~~g~l~va 268 (335)
|+- .|+++...++++..++.... .. .+. ... + .....++++.++++-.++
T Consensus 157 ~~~~~~lL~sg~~D~~v~vwnl~~~--~t-cl~~~~~-H-~S~vtsL~~~~d~~~~ls 209 (775)
T KOG0319|consen 157 PHWNRWLLASGATDGTVRVWNLNDK--RT-CLHTMIL-H-KSAVTSLAFSEDSLELLS 209 (775)
T ss_pred CccchhheeecCCCceEEEEEcccC--ch-HHHHHHh-h-hhheeeeeeccCCceEEE
Confidence 765 56677778899999999864 11 111 111 1 223567777777654444
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.019 Score=35.58 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=29.7
Q ss_pred CCCCCceeECCC-CcEEEEeCCCCeEEEEccCCc
Q 039428 153 KSTADDIAVDAE-GNAYVTDVVSSKIWKVGVEGQ 185 (335)
Q Consensus 153 ~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~g~ 185 (335)
...|+++++|+. +++|.+|...+.|.+.+.+|.
T Consensus 8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 678999999997 579999999999999998874
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.75 Score=42.18 Aligned_cols=131 Identities=8% Similarity=-0.012 Sum_probs=78.0
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEee-cC-C-------cCCCCcceEEEe---CCCCeEEE
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-ED-D-------VVGNATMGIAVD---RPRNRLLV 117 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~-~-------~~~~~p~Gi~~d---~~~g~l~v 117 (335)
...++..+++|++++.+.....|+++|+.+|+ |+ |.. .+ . .....-+...+- +.++.|-+
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~----I~----W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~Isl 216 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGK----II----WRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISL 216 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCc----EE----EEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEE
Confidence 45788889999876555777899999976665 22 321 12 0 000112333333 23566666
Q ss_pred EEec-----CCCCccceEEEEECCCCeEEEEeecCCCccCCC--CCCceeECCCCcEEEEeCCCCeEEEEccCCcEEE
Q 039428 118 AFTD-----VLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKS--TADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLS 188 (335)
Q Consensus 118 ~~~D-----~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~--~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~ 188 (335)
.... ......+.++.+|+++..............++. ..-.+..-++|+++|+....+++..++++|+.+.
T Consensus 217 FDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~~~G~vv~ 294 (299)
T PF14269_consen 217 FDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNNGRISEFTPDGEVVW 294 (299)
T ss_pred EcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCCceEEEECCCCCEEE
Confidence 4221 001123679999999776553333321111121 2224566788999999999999999999998765
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=1.2 Score=38.99 Aligned_cols=193 Identities=15% Similarity=0.137 Sum_probs=119.0
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-..+.+.-+|+.-++...+.+|.-|++..+. .+. ..+.. |+-....+... ++.=++ ..+++ ..
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~----lik---tYsgh---G~EVlD~~~s~-Dnskf~---s~GgD--k~ 82 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA----LIK---TYSGH---GHEVLDAALSS-DNSKFA---SCGGD--KA 82 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeecccccc----eee---eecCC---Cceeeeccccc-cccccc---cCCCC--ce
Confidence 34677888899866666778889999865443 121 11111 22334444443 333333 22334 36
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE---EEEecCCccccccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL---LSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~---~~~~~~~~~~~~~~~~~~~~ 206 (335)
+..||.++|++...... . ....|.+++..+-.+.++.+....+..+|=.... ++++.. + .-+
T Consensus 83 v~vwDV~TGkv~Rr~rg--H---~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde--a--------~D~ 147 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRG--H---LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE--A--------KDG 147 (307)
T ss_pred EEEEEcccCeeeeeccc--c---cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh--h--------cCc
Confidence 99999999988744322 1 4567889999888899999998899999865432 221211 1 112
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
...|.+ .++.+++-+..|++.++|+..+ ... .+..| . -..-+.+.++|+...++.....++.++...
T Consensus 148 V~Si~v--~~heIvaGS~DGtvRtydiR~G--~l~-sDy~g-~---pit~vs~s~d~nc~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 148 VSSIDV--AEHEIVAGSVDGTVRTYDIRKG--TLS-SDYFG-H---PITSVSFSKDGNCSLASSLDSTLRLLDKET 214 (307)
T ss_pred eeEEEe--cccEEEeeccCCcEEEEEeecc--eee-hhhcC-C---cceeEEecCCCCEEEEeeccceeeecccch
Confidence 333333 4678889999999999999876 221 12223 1 136788889998777755435567666543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=2.3 Score=42.30 Aligned_cols=202 Identities=11% Similarity=0.191 Sum_probs=124.5
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
.++|+..+.+.+.++..+|.|-.|.+...- ..+ +++..++ ..+..+|+..+ +++|+-. +.. +.|.
T Consensus 29 ~slA~s~kS~~lAvsRt~g~IEiwN~~~~w-----~~~-~vi~g~~--drsIE~L~W~e-~~RLFS~--g~s----g~i~ 93 (691)
T KOG2048|consen 29 VSLAYSHKSNQLAVSRTDGNIEIWNLSNNW-----FLE-PVIHGPE--DRSIESLAWAE-GGRLFSS--GLS----GSIT 93 (691)
T ss_pred EEEEEeccCCceeeeccCCcEEEEccCCCc-----eee-EEEecCC--CCceeeEEEcc-CCeEEee--cCC----ceEE
Confidence 578999999999999889999999864333 222 2443333 24678999984 8999984 332 3599
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIV 211 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia 211 (335)
.||+.+++.....+.. .+.-+.+++.|.+....-....|.++-++-.-+.++. . ..|.. +....-.++
T Consensus 94 EwDl~~lk~~~~~d~~-----gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~-~-r~l~r-----q~sRvLsls 161 (691)
T KOG2048|consen 94 EWDLHTLKQKYNIDSN-----GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY-K-RSLMR-----QKSRVLSLS 161 (691)
T ss_pred EEecccCceeEEecCC-----CcceeEEEeCCccceEEeecCCceEEEEecCCceEEE-E-eeccc-----ccceEEEEE
Confidence 9999988776554431 2455778888876533333445555555443333321 0 01111 123356789
Q ss_pred EccCCeEEEEECCCCEEEEEeCCCCceeEEEEecc----CCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 212 YHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELR----GGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 212 ~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~----g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
+++++.-.++-+.++.|...|...+. ++..+... ....-....++.+-.++.+...+. .+.+...+...
T Consensus 162 w~~~~~~i~~Gs~Dg~Iriwd~~~~~-t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS-~G~V~FWd~~~ 234 (691)
T KOG2048|consen 162 WNPTGTKIAGGSIDGVIRIWDVKSGQ-TLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDS-AGTVTFWDSIF 234 (691)
T ss_pred ecCCccEEEecccCceEEEEEcCCCc-eEEEeeecccccccCCceEEEEEEEeecCcEEEecC-CceEEEEcccC
Confidence 99999766788888989999988874 44433211 110112357788887777666655 25566655543
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.65 Score=44.61 Aligned_cols=198 Identities=17% Similarity=0.174 Sum_probs=119.4
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
..|-.+....++|+.+++.....++..||.. ...| . +++ ..+. .+-.+..++++++.+-.|.|..|.
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLA-apTp-r-ika----elts-sapaCyALa~spDakvcFsccsdG----- 531 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLA-APTP-R-IKA----ELTS-SAPACYALAISPDAKVCFSCCSDG----- 531 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeecc-CCCc-c-hhh----hcCC-cchhhhhhhcCCccceeeeeccCC-----
Confidence 4467788899999999999667788899853 3211 0 110 0111 112568899998777777776553
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccC-CcEEEEecCCcccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
.|.+||+....++. ++.+. .....-|.+.+||. +| +....++|..+|.. |+.+. .-.|..
T Consensus 532 -nI~vwDLhnq~~Vr--qfqGh---tDGascIdis~dGtklW-TGGlDntvRcWDlregrqlq---qhdF~S-------- 593 (705)
T KOG0639|consen 532 -NIAVWDLHNQTLVR--QFQGH---TDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQ---QHDFSS-------- 593 (705)
T ss_pred -cEEEEEcccceeee--cccCC---CCCceeEEecCCCceee-cCCCccceeehhhhhhhhhh---hhhhhh--------
Confidence 39999998765552 34221 22344577788995 66 56677899999975 33322 112332
Q ss_pred ccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 206 GLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
..-.+-..|.+ +|.|.- .++.+++.-..+. ....+.... ...-.+.|..-|++||+-...|-+.+.+.+-|
T Consensus 594 QIfSLg~cP~~dWlavGM-ens~vevlh~skp--~kyqlhlhe----ScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 594 QIFSLGYCPTGDWLAVGM-ENSNVEVLHTSKP--EKYQLHLHE----SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred hheecccCCCccceeeec-ccCcEEEEecCCc--cceeecccc----cEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 24455666766 666654 5667888777765 333333322 12445777788999999554444444444433
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.70 E-value=2.1 Score=40.97 Aligned_cols=181 Identities=10% Similarity=0.063 Sum_probs=109.4
Q ss_pred eeeeEEcCCCCEEEEEecC-CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 51 CETAKWDDVGRRFLVSFLD-GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~-~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
..-+-+.++++..+++..+ ..+..||. .+.+ +. .-++... ......++.|.++++.++ .... +.
T Consensus 113 v~~~~f~~~d~t~l~s~sDd~v~k~~d~-s~a~----v~--~~l~~ht---DYVR~g~~~~~~~hivvt--GsYD---g~ 177 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSGSDDKVVKYWDL-STAY----VQ--AELSGHT---DYVRCGDISPANDHIVVT--GSYD---GK 177 (487)
T ss_pred eeEEEecccCCeEEEecCCCceEEEEEc-CCcE----EE--EEecCCc---ceeEeeccccCCCeEEEe--cCCC---ce
Confidence 3667889998888888444 55555654 4442 11 1122221 234566777778888884 3332 46
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEE-ecCCcccccccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSI-IRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~-~~~~~~~~~~~~~~~~~p 207 (335)
|..||.++.. .....+.. ......+.+-|.|.+.++ ..++.|.+||.- |..... ..+ + ....
T Consensus 178 vrl~DtR~~~-~~v~elnh----g~pVe~vl~lpsgs~ias-AgGn~vkVWDl~~G~qll~~~~~--H--------~KtV 241 (487)
T KOG0310|consen 178 VRLWDTRSLT-SRVVELNH----GCPVESVLALPSGSLIAS-AGGNSVKVWDLTTGGQLLTSMFN--H--------NKTV 241 (487)
T ss_pred EEEEEeccCC-ceeEEecC----CCceeeEEEcCCCCEEEE-cCCCeEEEEEecCCceehhhhhc--c--------cceE
Confidence 9999987652 22223321 122345777788888887 455678888875 443321 110 1 1237
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
..+++..+++-+++-.-++.|-+||+..-+ .+..+..++ . .-.|++.+++.-.|+
T Consensus 242 TcL~l~s~~~rLlS~sLD~~VKVfd~t~~K-vv~s~~~~~-p----vLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDRHVKVFDTTNYK-VVHSWKYPG-P----VLSIAVSPDDQTVVI 296 (487)
T ss_pred EEEEeecCCceEeecccccceEEEEccceE-EEEeeeccc-c----eeeEEecCCCceEEE
Confidence 899999998655677788899999977654 555555544 1 356888887755555
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.5 Score=39.93 Aligned_cols=206 Identities=16% Similarity=0.199 Sum_probs=104.1
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-.+++++.+|..+.+...++.|..|+..+ +. ..+.+.++.. +.-..|.-+++.|+-..+.|... .+ +.|
T Consensus 89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D--F~---~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~--~g---~~l 157 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATISGDRSIRLWDVRD--FE---NKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVK--RG---NKL 157 (420)
T ss_pred eeeeEEcCCCceeEEEeCCceEEEEecch--hh---hhhhhHhhcc-ccCCCceEEEECCCcceEEEEEc--cC---CEE
Confidence 46899999998777668889998887432 20 1122233221 11236888899875455555332 22 235
Q ss_pred EEEEC--CC-CeEE-EEeecC---CCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccc
Q 039428 131 AAYDL--ST-WKRL-FLTQLS---GKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 131 ~~~d~--~~-~~~~-~~~~~~---~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
.+|-. ++ |... ..+... -+....--.-++-+...+.+..+-+....|..++..|+.+..+...
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtn---------- 227 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTN---------- 227 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccc----------
Confidence 55543 21 2111 111110 0000001111233333444445566778899999999877654321
Q ss_pred ccccCeEEEccCC-eEEEEECCCC--EEEEEeCCCC---ceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEE
Q 039428 204 VFGLNGIVYHPDG-FLIVIHMCSG--NLFKIDIRKE---EEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARL 277 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyvad~~~~--~v~~~d~~~~---~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v 277 (335)
...-.--+++|+| ++.++- .+- +||.+=.... ++..+.+.+.| . -.....+++.++.+=.++-...+..++
T Consensus 228 q~~n~~aavSP~GRFia~~g-FTpDVkVwE~~f~kdG~fqev~rvf~LkG-H-~saV~~~aFsn~S~r~vtvSkDG~wri 304 (420)
T KOG2096|consen 228 QSSNYDAAVSPDGRFIAVSG-FTPDVKVWEPIFTKDGTFQEVKRVFSLKG-H-QSAVLAAAFSNSSTRAVTVSKDGKWRI 304 (420)
T ss_pred cccccceeeCCCCcEEEEec-CCCCceEEEEEeccCcchhhhhhhheecc-c-hhheeeeeeCCCcceeEEEecCCcEEE
Confidence 1123455899999 454444 333 4443322222 22444556655 3 233566777776544444332355555
Q ss_pred EEc
Q 039428 278 VES 280 (335)
Q Consensus 278 ~~~ 280 (335)
.+.
T Consensus 305 wdt 307 (420)
T KOG2096|consen 305 WDT 307 (420)
T ss_pred eec
Confidence 543
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=2 Score=42.09 Aligned_cols=177 Identities=10% Similarity=0.019 Sum_probs=90.6
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC--CCeEEEEccCCcEEEE
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV--SSKIWKVGVEGQLLSI 189 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~--~~~I~~~d~~g~~~~~ 189 (335)
++.||++.+.........+..||+.++.-....+.+.+ ... ...+.-+|.+|+.... ...+.++++....-..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~---r~~--~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP---RLY--ASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch---hhc--ceEEEECCEEEEECCcCCCCceEEEECCCCeEEE
Confidence 57888864311111124688999988764432222111 112 2222346889998643 3467888876433221
Q ss_pred ecCCccccccccccccccCeEEEccCCeEEEEECC---CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEE
Q 039428 190 IRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC---SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLV 266 (335)
Q Consensus 190 ~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~---~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~ 266 (335)
+ +.+.. ...-.+.+. -+|.||+.-.. ...+.++|+..+ ....++.-. . +.....+..-+|.+|
T Consensus 346 ~--~~l~~------~r~~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~m~-~--~r~~~~~~~~~~~IY 411 (480)
T PHA02790 346 M--PSLLK------PRCNPAVAS-INNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPSTY-Y--PHYKSCALVFGRRLF 411 (480)
T ss_pred C--CCCCC------CCcccEEEE-ECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCCCC-C--ccccceEEEECCEEE
Confidence 1 11111 111223333 37899987432 245788898876 444432111 1 111222223468999
Q ss_pred EEecCCCeEEEEEcCCC-cEEEEEeeeecCCCCCcceEEEEeCCeEEEEe
Q 039428 267 VAGNPYPSARLVESSDG-WETASVVAKFNGPTHRVATAATVKDGRVYLSH 315 (335)
Q Consensus 267 va~~~~~~~~v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~~ 315 (335)
|.+. . ..+++...+ |.... ....|... .++++-+|+|||.-
T Consensus 412 v~GG--~-~e~ydp~~~~W~~~~---~m~~~r~~--~~~~v~~~~IYviG 453 (480)
T PHA02790 412 LVGR--N-AEFYCESSNTWTLID---DPIYPRDN--PELIIVDNKLLLIG 453 (480)
T ss_pred EECC--c-eEEecCCCCcEeEcC---CCCCCccc--cEEEEECCEEEEEC
Confidence 9964 2 445665544 76432 22223222 35666799999943
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.73 Score=47.20 Aligned_cols=160 Identities=14% Similarity=0.203 Sum_probs=97.4
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..++++.+|+.......+-.|-.++..+.. .+ ..+.... ....++.++| ++++.++.. .. +.|.
T Consensus 100 r~~~v~g~g~~iaagsdD~~vK~~~~~D~s------~~-~~lrgh~---apVl~l~~~p-~~~fLAvss-~d----G~v~ 163 (933)
T KOG1274|consen 100 RDLAVSGSGKMIAAGSDDTAVKLLNLDDSS------QE-KVLRGHD---APVLQLSYDP-KGNFLAVSS-CD----GKVQ 163 (933)
T ss_pred eEEEEecCCcEEEeecCceeEEEEeccccc------hh-eeecccC---CceeeeeEcC-CCCEEEEEe-cC----ceEE
Confidence 678999999877776656556555532222 11 1222111 2457999998 676666532 22 3599
Q ss_pred EEECCCCeEEEEeecCCCccC---CCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEE-ecCCcccccccccccccc
Q 039428 132 AYDLSTWKRLFLTQLSGKSEE---KSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSI-IRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~---~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~p 207 (335)
+||.+++.+......-.+... ....+-++..|+|.-|..-...+.|..++++|-.... +.. .+.. ...
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~-~~~s-------s~~ 235 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD-KLSS-------SKF 235 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc-cccc-------cce
Confidence 999998866533222111111 1223457889995544444667899999998754432 211 1111 126
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCC
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~ 235 (335)
+-++|+|.|.-+.+..-+|+|.++|.+.
T Consensus 236 ~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 236 SDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 7789999997667777899999999884
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.49 Score=45.36 Aligned_cols=184 Identities=13% Similarity=0.094 Sum_probs=106.8
Q ss_pred eeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 51 CETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
-++++.-... +|.++ ..++.|-.||.. .+ .+. +++.++. ....++.++ ...-|++....++ .
T Consensus 82 ~~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~-~k----l~h--r~lkdh~---stvt~v~YN--~~DeyiAsvs~gG----d 144 (673)
T KOG4378|consen 82 AFCVACASQS-LYEISGGQSGCVKIWDLR-AK----LIH--RFLKDHQ---STVTYVDYN--NTDEYIASVSDGG----D 144 (673)
T ss_pred HHHHhhhhcc-eeeeccCcCceeeehhhH-HH----HHh--hhccCCc---ceeEEEEec--CCcceeEEeccCC----c
Confidence 3455555443 67777 556777778753 22 111 2333332 235666665 4556665443333 3
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCcEEEE-ecCCcccccccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQLLSI-IRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~p 207 (335)
|.+....+++... .+..+ . .....-+.+.+.- .+.++-+..|.|..+|..|..... +.. ....| .
T Consensus 145 iiih~~~t~~~tt--~f~~~-s-gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~-~HsAP--------~ 211 (673)
T KOG4378|consen 145 IIIHGTKTKQKTT--TFTID-S-GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE-AHSAP--------C 211 (673)
T ss_pred EEEEecccCcccc--ceecC-C-CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh-hccCC--------c
Confidence 7777777664331 11100 0 0011224456654 466777889999999998864331 100 01111 6
Q ss_pred CeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 208 NGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 208 ~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
.||||+|.+ .|+|+-.-+.+|+.+|....+ ....+... .++ .-+++.++|.+.++++
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~-s~~~l~y~--~Pl---stvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQA-STDRLTYS--HPL---STVAFSECGTYLCAGN 269 (673)
T ss_pred CcceecCCccceEEEecccceEEEeeccccc-ccceeeec--CCc---ceeeecCCceEEEeec
Confidence 899999988 888998889999999998764 33333321 222 4688888888888866
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.61 E-value=2 Score=40.19 Aligned_cols=200 Identities=13% Similarity=0.139 Sum_probs=114.5
Q ss_pred eeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecC--CcCC--CCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 52 ETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKED--DVVG--NATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~--~~~~--~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
-.++|+|-....+.+ ..+-+|.+|+.++... .. -+..| .+.| .+..=++.+|...++..+ + +.+
T Consensus 85 LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l----~~---~ltepvv~L~gH~rrVg~V~wHPtA~NVLls-a--g~D- 153 (472)
T KOG0303|consen 85 LDIDWCPFNDCVIASGSEDTKVMVWQIPENGL----TR---DLTEPVVELYGHQRRVGLVQWHPTAPNVLLS-A--GSD- 153 (472)
T ss_pred cccccCccCCceeecCCCCceEEEEECCCccc----cc---CcccceEEEeecceeEEEEeecccchhhHhh-c--cCC-
Confidence 478999988877777 6667787777665431 11 00111 1111 233345556544444442 1 112
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
+.|..||..+|+...... . ......+.+..||.++++.....+|.++|+....+..-+ ... .+..
T Consensus 154 -n~v~iWnv~tgeali~l~--h----pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~h-------eG~k 218 (472)
T KOG0303|consen 154 -NTVSIWNVGTGEALITLD--H----PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAH-------EGAK 218 (472)
T ss_pred -ceEEEEeccCCceeeecC--C----CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccc-------cCCC
Confidence 469999999997664322 1 345567889999999999999999999999855443111 011 1222
Q ss_pred cCeEEEccCCeEEEEECC---CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEE---cCC-CcEEEEecCCCeEEEEE
Q 039428 207 LNGIVYHPDGFLIVIHMC---SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLAL---LSP-TKLVVAGNPYPSARLVE 279 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~---~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~---d~~-g~l~va~~~~~~~~v~~ 279 (335)
|.=..|-.+|.++.+-.. ..++...|++.-........ +....|+-+ |++ +-+|+++-+..+||.+.
T Consensus 219 ~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e------lDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 219 PARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQE------LDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred cceeEEeccCceeeeccccccccceeccCcccccCcceeEE------eccCCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 444445557766554432 34566666655321111111 222345543 666 46999987777888887
Q ss_pred cCCC
Q 039428 280 SSDG 283 (335)
Q Consensus 280 ~~~~ 283 (335)
..++
T Consensus 293 it~d 296 (472)
T KOG0303|consen 293 ITNE 296 (472)
T ss_pred ecCC
Confidence 6654
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.57 E-value=3 Score=41.95 Aligned_cols=224 Identities=17% Similarity=0.147 Sum_probs=119.6
Q ss_pred cCCCCEEEEE-ecC-----CeEEEEECCCCCCCcceeeeeEEeecCCcC-CCCcceEEEeCCCCeEEEEEecC-CCCccc
Q 039428 57 DDVGRRFLVS-FLD-----GGVGQVLVPDEYSPGTVLEEVKLVKEDDVV-GNATMGIAVDRPRNRLLVAFTDV-LGNKYS 128 (335)
Q Consensus 57 d~~g~~~~~~-~~~-----~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~-~~~p~Gi~~d~~~g~l~v~~~D~-~~~~~~ 128 (335)
...+.++.++ ... ..+..+|+..+. |.....+. ...-.|+++- +|.|||+.+-. +....+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~----------w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~ 349 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNE----------WSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLS 349 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCc----------EeecCCCCcccccccEEEE--CCEEEEEccccCCCcccc
Confidence 3345566666 332 467788864333 32222222 1345788876 68999974322 122336
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC-----CeEEEEccCCcEEEEecCCcccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS-----SKIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~-----~~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
.+.+||+.+++-....+... .-.--++++ =+|.+|+....+ ..|-++|+....-..... .. .
T Consensus 350 ~ve~YD~~~~~W~~~a~M~~----~R~~~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~--m~------~ 416 (571)
T KOG4441|consen 350 SVERYDPRTNQWTPVAPMNT----KRSDFGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP--ML------T 416 (571)
T ss_pred eEEEecCCCCceeccCCccC----ccccceeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCC--CC------c
Confidence 79999999887332222211 111122333 368899986443 467888887654321110 00 1
Q ss_pred ccccCeEEEccCCeEEEEECC------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCC-----
Q 039428 204 VFGLNGIVYHPDGFLIVIHMC------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPY----- 272 (335)
Q Consensus 204 ~~~p~Gia~~~dg~Lyvad~~------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~----- 272 (335)
...-.|++.- +|.||+.-.. -..+.++|+..+ ....++-=. . -..--|+++. ++.||+.+..+
T Consensus 417 ~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~-~-~R~~~g~a~~-~~~iYvvGG~~~~~~~ 490 (571)
T KOG4441|consen 417 RRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMN-T-RRSGFGVAVL-NGKIYVVGGFDGTSAL 490 (571)
T ss_pred ceeeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCC--ceeecCCcc-c-ccccceEEEE-CCEEEEECCccCCCcc
Confidence 1223455544 8899987652 267899999987 444443101 0 0123467766 57999995421
Q ss_pred CeEEEEEcCCC-cEEEEEeeeecCCCCCcceEEEEeCCeEEEEec
Q 039428 273 PSARLVESSDG-WETASVVAKFNGPTHRVATAATVKDGRVYLSHL 316 (335)
Q Consensus 273 ~~~~v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~~~ 316 (335)
..+..++...+ |+.. ..... .+...+++..++.||+.-.
T Consensus 491 ~~VE~ydp~~~~W~~v---~~m~~--~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 491 SSVERYDPETNQWTMV---APMTS--PRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred ceEEEEcCCCCceeEc---ccCcc--ccccccEEEECCEEEEEec
Confidence 12333444333 6543 21211 2223467778999998544
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.6 Score=38.70 Aligned_cols=195 Identities=13% Similarity=0.094 Sum_probs=113.6
Q ss_pred ceeeeEEcCCCC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.-+-++|++... ++++...+..|.+||...++. +.+ ..... .-.-+...|+++.+.+.+.| .
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~----~~~--i~~~~-----eni~i~wsp~g~~~~~~~kd------D 128 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKC----TAR--IETKG-----ENINITWSPDGEYIAVGNKD------D 128 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEeccCcE----EEE--eeccC-----cceEEEEcCCCCEEEEecCc------c
Confidence 456788988865 444447788999998654441 221 21111 12356677755555553322 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCcccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
.|..+|.++.+....... ....|.++...++++|+...+.|.|..+.-- -+.+..+ .. ...+-
T Consensus 129 ~it~id~r~~~~~~~~~~------~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si-----~A-----H~snC 192 (313)
T KOG1407|consen 129 RITFIDARTYKIVNEEQF------KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSI-----KA-----HPSNC 192 (313)
T ss_pred cEEEEEecccceeehhcc------cceeeeeeecCCCCEEEEecCCceEEEEecccccccccc-----cc-----CCcce
Confidence 588889877655432221 4567788888788899988888988877633 2222211 10 11345
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCC-CCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSL-GDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~-pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
-.|.|+|+|+-+.+-+....+.-.|++.-- -.+.|.. +.. ..-+.+.-+|++..+.....-|-+-...+|
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~ELi-C~R~isR-----ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDELI-CERCISR-----LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhHhh-hheeecc-----ccCceEEEEeccCcceeeccCccceEEeEecccC
Confidence 677889999777666666666666766431 2233331 222 356777778887777554344554444444
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=2.8 Score=41.12 Aligned_cols=175 Identities=10% Similarity=-0.067 Sum_probs=89.6
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 59 VGRRFLVSFLD-----GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 59 ~g~~~~~~~~~-----~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
++.+|+++..+ ..++++|+.... |...+.+.. ..-.+++.- +|.||+..+. .+. ..+.+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~----------W~~~~~m~~~r~~~~~v~~--~~~iYviGG~-~~~--~sve~ 335 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNN----------WIPIPPMNSPRLYASGVPA--NNKLYVVGGL-PNP--TSVER 335 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCE----------EEECCCCCchhhcceEEEE--CCEEEEECCc-CCC--CceEE
Confidence 34555555321 468889864332 443343321 112344443 6899996431 111 35889
Q ss_pred EECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC---CCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 133 YDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV---SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~---~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
||+.+++-....+++ .+.... .++--+|++||.... ...+.++||+...-... +....| ..-.+
T Consensus 336 ydp~~n~W~~~~~l~---~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~--~~m~~~------r~~~~ 402 (480)
T PHA02790 336 WFHGDAAWVNMPSLL---KPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG--PSTYYP------HYKSC 402 (480)
T ss_pred EECCCCeEEECCCCC---CCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC--CCCCCc------cccce
Confidence 999876544322221 111222 223346899997543 24577888875443211 111110 11123
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
++ .-+|.|||.- |.+.++|++.+ ..+.++--. . -..--|+++- +|++||.+.
T Consensus 403 ~~-~~~~~IYv~G---G~~e~ydp~~~--~W~~~~~m~-~-~r~~~~~~v~-~~~IYviGG 454 (480)
T PHA02790 403 AL-VFGRRLFLVG---RNAEFYCESSN--TWTLIDDPI-Y-PRDNPELIIV-DNKLLLIGG 454 (480)
T ss_pred EE-EECCEEEEEC---CceEEecCCCC--cEeEcCCCC-C-CccccEEEEE-CCEEEEECC
Confidence 33 3478999874 45778898876 455443111 0 0112356554 579999954
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.039 Score=34.56 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=30.9
Q ss_pred CcEEEEeCCCC-eEEEEccCCcEEEE-ecCCccccccccccccccCeEEEcc
Q 039428 165 GNAYVTDVVSS-KIWKVGVEGQLLSI-IRSPLFTAKEWYKNVFGLNGIVYHP 214 (335)
Q Consensus 165 G~lyV~d~~~~-~I~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~p~Gia~~~ 214 (335)
|++|.+|.... .|.+.+.+|...+. +.. ....|+|||+++
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~----------~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISD----------DLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEES----------STSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEEC----------CCCCcCEEEECC
Confidence 57999999999 99999999876443 322 234699999984
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.45 Score=42.75 Aligned_cols=155 Identities=11% Similarity=0.024 Sum_probs=96.8
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
-++.|.++++.++.+..+.+|+.||..+|+. .. ++-... ...+.+... +.|-..|+++.. + ..+.
T Consensus 94 M~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~----~r--k~k~h~----~~vNs~~p~-rrg~~lv~Sgsd--D--~t~k 158 (338)
T KOG0265|consen 94 MELHGMRDGSHILSCGTDKTVRGWDAETGKR----IR--KHKGHT----SFVNSLDPS-RRGPQLVCSGSD--D--GTLK 158 (338)
T ss_pred EeeeeccCCCEEEEecCCceEEEEeccccee----ee--hhcccc----ceeeecCcc-ccCCeEEEecCC--C--ceEE
Confidence 4778899999998888899999999876662 11 121111 234455544 356666754322 2 4699
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIV 211 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia 211 (335)
.||.+.++...... .......+.+..++.=.++..-++.|.++|+........-++. .--..||.
T Consensus 159 l~D~R~k~~~~t~~------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh---------~DtIt~ls 223 (338)
T KOG0265|consen 159 LWDIRKKEAIKTFE------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH---------ADTITGLS 223 (338)
T ss_pred EEeecccchhhccc------cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecc---------cCceeeEE
Confidence 99988654432110 0233455777777665556667788999998422221111111 11278999
Q ss_pred EccCCeEEEEECCCCEEEEEeCCCC
Q 039428 212 YHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 212 ~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
++++|.-..+++-++.+.++|...-
T Consensus 224 ls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 224 LSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred eccCCCccccccccceEEEEEeccc
Confidence 9999966678888888888887763
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=2 Score=40.91 Aligned_cols=198 Identities=14% Similarity=0.156 Sum_probs=110.0
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..++-++.|..++.+.-.+.||.|....|.- +. ++... -....-|.+.. +|..+++.+ .+ +.|+
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~L----L~---v~~aH---YQ~ITcL~fs~-dgs~iiTgs---kD--g~V~ 148 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSSGIL----LN---VLSAH---YQSITCLKFSD-DGSHIITGS---KD--GAVL 148 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEeccccH----HH---HHHhh---ccceeEEEEeC-CCcEEEecC---CC--ccEE
Confidence 5778889888776665688999998766651 21 11111 13456788874 677777421 11 3577
Q ss_pred EEECCC-------CeEEEEeecCCCccCCCCCCceeECCCC---cEEEEeCCCCeEEEEccCCc-EEEEecCCccccccc
Q 039428 132 AYDLST-------WKRLFLTQLSGKSEEKSTADDIAVDAEG---NAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEW 200 (335)
Q Consensus 132 ~~d~~~-------~~~~~~~~~~~~~~~~~~p~~~~vd~~G---~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~ 200 (335)
+|+... +.+.....+... .-...|+.++..| ++|- -+....+..+|..+. .+..+ .|.
T Consensus 149 vW~l~~lv~a~~~~~~~p~~~f~~H---tlsITDl~ig~Gg~~~rl~T-aS~D~t~k~wdlS~g~LLlti---~fp---- 217 (476)
T KOG0646|consen 149 VWLLTDLVSADNDHSVKPLHIFSDH---TLSITDLQIGSGGTNARLYT-ASEDRTIKLWDLSLGVLLLTI---TFP---- 217 (476)
T ss_pred EEEEEeecccccCCCccceeeeccC---cceeEEEEecCCCccceEEE-ecCCceEEEEEeccceeeEEE---ecC----
Confidence 776421 111111111110 1223566676554 4443 355566666776533 32211 121
Q ss_pred cccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCcee-------------EEEEeccCCcCCCCCCeEEEcCCCcEEE
Q 039428 201 YKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEE-------------VKLIELRGGSSLSLGDGLALLSPTKLVV 267 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~-------------~~~~~~~g~~~~~~pdGia~d~~g~l~v 267 (335)
..++.+++||.++..+.-+..|.|+.++...-.+. .+.-...|...-....-+++.-||++.+
T Consensus 218 ----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 218 ----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred ----CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 34899999998854445557888988877653100 0010111211001345688999999999
Q ss_pred EecCCCeEEEEEc
Q 039428 268 AGNPYPSARLVES 280 (335)
Q Consensus 268 a~~~~~~~~v~~~ 280 (335)
++..++.++|.+.
T Consensus 294 SGd~dg~VcvWdi 306 (476)
T KOG0646|consen 294 SGDEDGKVCVWDI 306 (476)
T ss_pred eeCCCCCEEEEec
Confidence 9776677777664
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.31 Score=44.06 Aligned_cols=115 Identities=15% Similarity=0.193 Sum_probs=75.2
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..+.++|...++..+..+++|--||-. +... -...+++++.. ....|.++| .|.+..+..|- ..+.
T Consensus 176 n~l~FHPre~ILiS~srD~tvKlFDfs-K~sa---KrA~K~~qd~~----~vrsiSfHP-sGefllvgTdH-----p~~r 241 (430)
T KOG0640|consen 176 NDLDFHPRETILISGSRDNTVKLFDFS-KTSA---KRAFKVFQDTE----PVRSISFHP-SGEFLLVGTDH-----PTLR 241 (430)
T ss_pred cceeecchhheEEeccCCCeEEEEecc-cHHH---HHHHHHhhccc----eeeeEeecC-CCceEEEecCC-----Ccee
Confidence 578999999888777889999888843 3210 00001222221 457899998 55544432332 3588
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEcc
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGV 182 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~ 182 (335)
.||.++-+-....+ +. .+-....+.+...+.|++||+.+..|.|..+|-
T Consensus 242 lYdv~T~Qcfvsan-Pd-~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG 290 (430)
T KOG0640|consen 242 LYDVNTYQCFVSAN-PD-DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG 290 (430)
T ss_pred EEeccceeEeeecC-cc-cccccceeEEEecCCccEEEEeccCCcEEeecc
Confidence 89988765443333 21 222456678888999999999999999999974
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.7 Score=37.97 Aligned_cols=154 Identities=14% Similarity=0.131 Sum_probs=92.8
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
--.++...+...+.....+..++.||..+|+ +.. +|- ... ...+.++++. .-.+.+. +.. + ..+
T Consensus 62 VlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk----v~R--r~r-gH~---aqVNtV~fNe-esSVv~S-gsf--D--~s~ 125 (307)
T KOG0316|consen 62 VLDAALSSDNSKFASCGGDKAVQVWDVNTGK----VDR--RFR-GHL---AQVNTVRFNE-ESSVVAS-GSF--D--SSV 125 (307)
T ss_pred eeeccccccccccccCCCCceEEEEEcccCe----eee--ecc-ccc---ceeeEEEecC-cceEEEe-ccc--c--cee
Confidence 3345556665555444667889999987776 222 232 111 2567899985 4555552 222 1 358
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCe
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
..||=++......--+... .... +.+|=.+...|+.+..|++.++|.. |.... .-|..| .|.
T Consensus 126 r~wDCRS~s~ePiQildea---~D~V--~Si~v~~heIvaGS~DGtvRtydiR~G~l~s----Dy~g~p--------it~ 188 (307)
T KOG0316|consen 126 RLWDCRSRSFEPIQILDEA---KDGV--SSIDVAEHEIVAGSVDGTVRTYDIRKGTLSS----DYFGHP--------ITS 188 (307)
T ss_pred EEEEcccCCCCccchhhhh---cCce--eEEEecccEEEeeccCCcEEEEEeecceeeh----hhcCCc--------cee
Confidence 8999776543311001000 1111 3445557788888999999999975 43322 222222 799
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCc
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEE 237 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~ 237 (335)
+.+++||+-..+.+-+..|.-+|..+++
T Consensus 189 vs~s~d~nc~La~~l~stlrLlDk~tGk 216 (307)
T KOG0316|consen 189 VSFSKDGNCSLASSLDSTLRLLDKETGK 216 (307)
T ss_pred EEecCCCCEEEEeeccceeeecccchhH
Confidence 9999999666666778888888888763
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.06 Score=39.52 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=34.8
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccC
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVE 183 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~ 183 (335)
+.|.-||++. ..... .++..||||++++++ .+||++...+.|+++..+
T Consensus 36 ~~Vvyyd~~~--~~~va------~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKE--VKVVA------SGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCE--eEEee------ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3466677643 22221 237899999999987 599999999999988653
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.33 E-value=3 Score=42.17 Aligned_cols=206 Identities=11% Similarity=0.098 Sum_probs=120.5
Q ss_pred ceeEEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEE
Q 039428 39 THVYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVA 118 (335)
Q Consensus 39 ~~~~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~ 118 (335)
.+.+++.+.+.--.+++++.+. .+..+..+++|-.|+..+.+. ++.+ +. +...+-.+-| +++..+.
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~d~-~~~~Sga~~SikiWn~~t~kc-------iRTi--~~---~y~l~~~Fvp-gd~~Iv~ 429 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSSDS-ILLASGAGESIKIWNRDTLKC-------IRTI--TC---GYILASKFVP-GDRYIVL 429 (888)
T ss_pred cceeeeccchhheeEEEeecCc-eeeeecCCCcEEEEEccCcce-------eEEe--cc---ccEEEEEecC-CCceEEE
Confidence 3456666665566788888764 555666678898897533331 1122 11 1344566666 4444443
Q ss_pred EecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC------CcEEEEec-
Q 039428 119 FTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE------GQLLSIIR- 191 (335)
Q Consensus 119 ~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~------g~~~~~~~- 191 (335)
+ ..+ +.+..||..+..+.-.++. . -...+.++..||+.-+|+.+....|.-+|.. |...+++.
T Consensus 430 -G-~k~---Gel~vfdlaS~~l~Eti~A----H-dgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 430 -G-TKN---GELQVFDLASASLVETIRA----H-DGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred -e-ccC---CceEEEEeehhhhhhhhhc----c-ccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 2 222 4589999887655422221 1 2456789999999999998887777665532 21111110
Q ss_pred --CCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEe
Q 039428 192 --SPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAG 269 (335)
Q Consensus 192 --~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~ 269 (335)
...+.- ....-.+.++|||.+.+..--++++.+|-+++-+ ..+.+-| +.++ .--|.+.+|+++.|++
T Consensus 500 ~~~rtLel------~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK---FflsLYG-HkLP-V~smDIS~DSklivTg 568 (888)
T KOG0306|consen 500 KHTRTLEL------EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK---FFLSLYG-HKLP-VLSMDISPDSKLIVTG 568 (888)
T ss_pred ccceEEec------cccEEEEEEcCCCcEEEEEeccCeEEEEEeccee---eeeeecc-cccc-eeEEeccCCcCeEEec
Confidence 001111 1125678999999666666678888888777642 2333434 3243 3567777888999997
Q ss_pred cCCCeEEEEE
Q 039428 270 NPYPSARLVE 279 (335)
Q Consensus 270 ~~~~~~~v~~ 279 (335)
....++.+.-
T Consensus 569 SADKnVKiWG 578 (888)
T KOG0306|consen 569 SADKNVKIWG 578 (888)
T ss_pred cCCCceEEec
Confidence 6444455543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=95.28 E-value=2.9 Score=40.10 Aligned_cols=137 Identities=18% Similarity=0.076 Sum_probs=71.2
Q ss_pred eEEEEECCCCeEE-EEeecCC---Ccc-----CCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccc
Q 039428 129 ALAAYDLSTWKRL-FLTQLSG---KSE-----EKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKE 199 (335)
Q Consensus 129 ~v~~~d~~~~~~~-~~~~~~~---~~~-----~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~ 199 (335)
.|+.|||++..+. ..+.++- +.+ +..+.++.++. +|++++.= ..|+.+..++-+.....++.+
T Consensus 288 dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~-~Gd~ia~V-SRGkaFi~~~~~~~~iqv~~~------ 359 (668)
T COG4946 288 DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVV-NGDYIALV-SRGKAFIMRPWDGYSIQVGKK------ 359 (668)
T ss_pred cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccC-CCcEEEEE-ecCcEEEECCCCCeeEEcCCC------
Confidence 3888888876554 2222211 111 12333444442 45444432 245566666654444322211
Q ss_pred ccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 200 WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
+...-.-+..+++ .+.+.......|-.+|.+++ .++.+.- + ++....+.++++|+..++.+....+++++
T Consensus 360 ---~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~--e~kr~e~-~---lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 360 ---GGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGG--EVKRIEK-D---LGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred ---CceEEEEEccCCc-ceEEeccCCceEEEEecCCc--eEEEeeC-C---ccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 0111111222222 45556666778888888887 5555542 1 45577899999987444433235688888
Q ss_pred cCCC
Q 039428 280 SSDG 283 (335)
Q Consensus 280 ~~~~ 283 (335)
.+.|
T Consensus 430 idng 433 (668)
T COG4946 430 IDNG 433 (668)
T ss_pred ecCC
Confidence 7665
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.32 Score=44.81 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=92.0
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEc
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVG 181 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d 181 (335)
..||.-.. .+.++++.+ -.|-.||..-...+...... .....-+.+.|-- .+..+....+.|+.+|
T Consensus 150 ~~gIdh~~-~~~~FaTcG-------e~i~IWD~~R~~Pv~smswG-----~Dti~svkfNpvETsILas~~sDrsIvLyD 216 (433)
T KOG0268|consen 150 YLGIDHHR-KNSVFATCG-------EQIDIWDEQRDNPVSSMSWG-----ADSISSVKFNPVETSILASCASDRSIVLYD 216 (433)
T ss_pred cccccccc-ccccccccC-------ceeeecccccCCccceeecC-----CCceeEEecCCCcchheeeeccCCceEEEe
Confidence 35665553 566777432 13777777543333111110 1111234555543 4666665677888888
Q ss_pred cCC-cEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc
Q 039428 182 VEG-QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL 260 (335)
Q Consensus 182 ~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d 260 (335)
... ..+.- .. ....+|+|+|+|+++.|++...+..+|-+|...-+..+.+... . ......+.+.
T Consensus 217 ~R~~~Pl~K-----Vi------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d---h-vsAV~dVdfs 281 (433)
T KOG0268|consen 217 LRQASPLKK-----VI------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD---H-VSAVMDVDFS 281 (433)
T ss_pred cccCCccce-----ee------eeccccceecCccccceeeccccccceehhhhhhcccchhhcc---c-ceeEEEeccC
Confidence 753 22221 00 2345999999998899999999999999999874312333321 2 1224567778
Q ss_pred CCCcEEEEecCCCeEEEEEcCCC
Q 039428 261 SPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 261 ~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
|.|.=+|++.-..+|+++..+.+
T Consensus 282 ptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 282 PTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred CCcchhccccccceEEEeecCCC
Confidence 88988888765678998887654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.24 Score=47.37 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=73.7
Q ss_pred eEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 54 AKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 54 ia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
+.+++.-+.+.+. ..+|.|..||. ++..| ...+.........||.+.|.+..|+|.. +-+ .+|..
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv-~g~sp--------~~~~~~~HsAP~~gicfspsne~l~vsV---G~D--kki~~ 235 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDV-QGMSP--------IFHASEAHSAPCRGICFSPSNEALLVSV---GYD--KKINI 235 (673)
T ss_pred eecccccceeeEeeccCCeEEEEec-cCCCc--------ccchhhhccCCcCcceecCCccceEEEe---ccc--ceEEE
Confidence 4556665555555 77889999985 56532 1112221112458999999777777743 223 36999
Q ss_pred EECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE
Q 039428 133 YDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL 186 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~ 186 (335)
||..+.+....... ......+++.++|.+.++...+|+|+.+|..+..
T Consensus 236 yD~~s~~s~~~l~y------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 236 YDIRSQASTDRLTY------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred eecccccccceeee------cCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 99876554322111 1223459999999999999999999999988653
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.15 E-value=2.7 Score=38.95 Aligned_cols=167 Identities=13% Similarity=0.133 Sum_probs=96.3
Q ss_pred cceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 49 FLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
..-.++.|.+||..+... ..+..|..||+..+.. .++. ..+. ....=+..+|+++-++++..|..
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-------~pL~-~~gl--gg~slLkwSPdgd~lfaAt~dav---- 261 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-------IPLI-PKGL--GGFSLLKWSPDGDVLFAATCDAV---- 261 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-------cccc-ccCC--CceeeEEEcCCCCEEEEecccce----
Confidence 345899999999999888 6678899999655542 1222 1111 23345678887777777655531
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCC------------c
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSP------------L 194 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~------------~ 194 (335)
...+...-........+ + ..+.....-+|.|+ +.++-+...+||.+.-+++-....+.. .
T Consensus 262 --frlw~e~q~wt~erw~l---g--sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e 334 (445)
T KOG2139|consen 262 --FRLWQENQSWTKERWIL---G--SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE 334 (445)
T ss_pred --eeeehhcccceecceec---c--CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchh
Confidence 22332221111111111 1 23667788899995 777778889999988766543221100 0
Q ss_pred cccc-cccccccccCeEEEccCC-eEEEEECCCC-------EEEEEeCCCC
Q 039428 195 FTAK-EWYKNVFGLNGIVYHPDG-FLIVIHMCSG-------NLFKIDIRKE 236 (335)
Q Consensus 195 ~~~~-~~~~~~~~p~Gia~~~dg-~Lyvad~~~~-------~v~~~d~~~~ 236 (335)
.+.- +..--...+..||+||.| +|-|.-.+.. .|.++|....
T Consensus 335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred hhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 0000 000012348999999999 7877765544 3556665543
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.3 Score=40.62 Aligned_cols=125 Identities=14% Similarity=0.116 Sum_probs=79.1
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecC-C-----CccCCCCCCceeEC----CCCcEEEEeC
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLS-G-----KSEEKSTADDIAVD----AEGNAYVTDV 172 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~-~-----~~~~~~~p~~~~vd----~~G~lyV~d~ 172 (335)
.+.|..+. +|+++|..-.. +.|+++|+++|++++....+ . +...+..-.+..+- ++++|-+-|-
T Consensus 146 iNsV~~~~-~G~yLiS~R~~-----~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDD-DGDYLISSRNT-----STIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecC-CccEEEEeccc-----CEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 47888885 77887743222 67999999999998765432 0 01114445566665 5666666554
Q ss_pred ----------CCCeEEEEccCCcEEEEecCCccc-cccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCC
Q 039428 173 ----------VSSKIWKVGVEGQLLSIIRSPLFT-AKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 173 ----------~~~~I~~~d~~g~~~~~~~~~~~~-~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
..++|+.+|+..+..+.... +. .+.. -.-...-.+..-|.|+++|+....+++..++.++.
T Consensus 220 ~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~--~~~~~~~-~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~~~G~ 291 (299)
T PF14269_consen 220 ANSDFNGTEPSRGLVLELDPETMTVTLVRE--YSDHPDG-FYSPSQGSAQRLPNGNVLIGWGNNGRISEFTPDGE 291 (299)
T ss_pred CCCCCCCCcCCCceEEEEECCCCEEEEEEE--eecCCCc-ccccCCCcceECCCCCEEEecCCCceEEEECCCCC
Confidence 46889999998766554321 11 1100 00011234455667999999999999999999886
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=94.96 E-value=3.3 Score=38.99 Aligned_cols=152 Identities=17% Similarity=0.141 Sum_probs=88.1
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCc-CCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEE
Q 039428 56 WDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDV-VGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYD 134 (335)
Q Consensus 56 ~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~-~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d 134 (335)
.+.+|.+|+. ..++.|+.+|+.++.. .|...... ......++..+ +|+||+. +..+ .++.+|
T Consensus 65 ~~~dg~v~~~-~~~G~i~A~d~~~g~~--------~W~~~~~~~~~~~~~~~~~~--~G~i~~g--~~~g----~~y~ld 127 (370)
T COG1520 65 ADGDGTVYVG-TRDGNIFALNPDTGLV--------KWSYPLLGAVAQLSGPILGS--DGKIYVG--SWDG----KLYALD 127 (370)
T ss_pred EeeCCeEEEe-cCCCcEEEEeCCCCcE--------EecccCcCcceeccCceEEe--CCeEEEe--cccc----eEEEEE
Confidence 6667766554 5677999999755541 13211110 00112344443 7999994 3322 499999
Q ss_pred CCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeEEEc
Q 039428 135 LSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYH 213 (335)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~ 213 (335)
.++|+..+...... . ..-.+-++-.++.+|+.. ..+.++.++.+ |......+.+.. . ......... .
T Consensus 128 ~~~G~~~W~~~~~~--~--~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~-~-----~~~~~~~~~-~ 195 (370)
T COG1520 128 ASTGTLVWSRNVGG--S--PYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAP-L-----SLSIYGSPA-I 195 (370)
T ss_pred CCCCcEEEEEecCC--C--eEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCc-c-----ccccccCce-e
Confidence 98898887766533 0 111223444678888874 66899999998 655443221110 0 011122222 4
Q ss_pred cCCeEEEEECC-CCEEEEEeCCCC
Q 039428 214 PDGFLIVIHMC-SGNLFKIDIRKE 236 (335)
Q Consensus 214 ~dg~Lyvad~~-~~~v~~~d~~~~ 236 (335)
.++.+|+.... ++.++.+++..+
T Consensus 196 ~~~~vy~~~~~~~~~~~a~~~~~G 219 (370)
T COG1520 196 ASGTVYVGSDGYDGILYALNAEDG 219 (370)
T ss_pred ecceEEEecCCCcceEEEEEccCC
Confidence 47789988764 568999999765
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.2 Score=42.45 Aligned_cols=169 Identities=12% Similarity=0.185 Sum_probs=96.6
Q ss_pred CceeEEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcce---eeeeEEeecCCcCCCCcce-EEEeCCCC
Q 039428 38 ATHVYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTV---LEEVKLVKEDDVVGNATMG-IAVDRPRN 113 (335)
Q Consensus 38 ~~~~~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v---~~~~~~~~~~~~~~~~p~G-i~~d~~~g 113 (335)
+.+...+.+-.---.++-|+|.|.++..+..++++-.|...+...--.. -+++-.+.+ .|.| +.-.+..+
T Consensus 349 ~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~w------sp~g~v~~n~~~~ 422 (524)
T KOG0273|consen 349 DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKW------SPTGPVTSNPNMN 422 (524)
T ss_pred CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEee------cCCCCccCCCcCC
Confidence 3444555443444578999999999888888898888863323210000 000000111 1222 22223233
Q ss_pred eEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecC
Q 039428 114 RLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRS 192 (335)
Q Consensus 114 ~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~ 192 (335)
...+. +.. + +.|..||...+....... .. .....++++.|+|+...+.+..++|..++... +..+-
T Consensus 423 ~~l~s-as~--d--stV~lwdv~~gv~i~~f~--kH---~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s--- 489 (524)
T KOG0273|consen 423 LMLAS-ASF--D--STVKLWDVESGVPIHTLM--KH---QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS--- 489 (524)
T ss_pred ceEEE-eec--C--CeEEEEEccCCceeEeec--cC---CCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe---
Confidence 33322 211 1 469999999887664321 11 23456899999999999989999999988764 33331
Q ss_pred CccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeC
Q 039428 193 PLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDI 233 (335)
Q Consensus 193 ~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~ 233 (335)
+.. ..+..-++++.+|....+-...+.+.++|.
T Consensus 490 --~~~------~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 490 --YQG------TGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred --ecC------CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 211 123567899998855545445666666664
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=3.6 Score=38.89 Aligned_cols=100 Identities=16% Similarity=0.045 Sum_probs=47.7
Q ss_pred CCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC--CCcceEEEeCCCCeEEEEEecCC-C-----Cccce
Q 039428 59 VGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG--NATMGIAVDRPRNRLLVAFTDVL-G-----NKYSA 129 (335)
Q Consensus 59 ~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~--~~p~Gi~~d~~~g~l~v~~~D~~-~-----~~~~~ 129 (335)
++.+|+.. .....++++|..... . .|...+.+.. ..-.+++.- ++.|||..+... . .....
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~------~--~W~~l~~~p~~~r~~~~~v~~--~~~IYV~GG~~~~~~~~~~~~~~~ 107 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPS------K--GWTKIAAFPGGPREQAVAAFI--DGKLYVFGGIGKTNSEGSPQVFDD 107 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCC------C--CeEECCcCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCceeEccc
Confidence 45666656 445678899853211 0 1322222211 122344443 688999743211 0 00145
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeEC-CCCcEEEEeC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVD-AEGNAYVTDV 172 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd-~~G~lyV~d~ 172 (335)
+++||+.+++-...... .+ .......++- -+++|||...
T Consensus 108 v~~YD~~~n~W~~~~~~-~p---~~~~~~~~~~~~~~~IYv~GG 147 (376)
T PRK14131 108 VYKYDPKTNSWQKLDTR-SP---VGLAGHVAVSLHNGKAYITGG 147 (376)
T ss_pred EEEEeCCCCEEEeCCCC-CC---CcccceEEEEeeCCEEEEECC
Confidence 89999988754422211 11 1111112222 4688999754
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=94.82 E-value=2.8 Score=37.38 Aligned_cols=149 Identities=19% Similarity=0.146 Sum_probs=83.0
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCcc--C------CCCCCceeECCCCc--EEEEeCC
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSE--E------KSTADDIAVDAEGN--AYVTDVV 173 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~------~~~p~~~~vd~~G~--lyV~d~~ 173 (335)
.|-.+- +|.||.--... ..|.+||+.++.+.....++..+- . ...--|+++|..|- ||.+...
T Consensus 77 tG~VVY--ngslYY~~~~s-----~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~ 149 (255)
T smart00284 77 TGVVVY--NGSLYFNKFNS-----HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN 149 (255)
T ss_pred ccEEEE--CceEEEEecCC-----ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC
Confidence 466665 68888832222 359999999987764343432210 0 12224899999993 5555555
Q ss_pred CCeEE--EEccCCc-EEEEecCCccccccccccccccCeEEEccCCeEEEEECC---CCE-EEEEeCCCCceeEEEEecc
Q 039428 174 SSKIW--KVGVEGQ-LLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC---SGN-LFKIDIRKEEEEVKLIELR 246 (335)
Q Consensus 174 ~~~I~--~~d~~g~-~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~---~~~-v~~~d~~~~~~~~~~~~~~ 246 (335)
.+.|. ++|++.- ....+...... ..-|=||---|.||++++. ..+ -+.+|+.+.++....+...
T Consensus 150 ~g~ivvSkLnp~tL~ve~tW~T~~~k---------~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~ 220 (255)
T smart00284 150 AGKIVISKLNPATLTIENTWITTYNK---------RSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFE 220 (255)
T ss_pred CCCEEEEeeCcccceEEEEEEcCCCc---------ccccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeeeec
Confidence 56555 7888653 23334322111 1223355556999999862 233 4888988763222223322
Q ss_pred CCcCCCCCCeEEEcCCC-cEEEEec
Q 039428 247 GGSSLSLGDGLALLSPT-KLVVAGN 270 (335)
Q Consensus 247 g~~~~~~pdGia~d~~g-~l~va~~ 270 (335)
. . ...-.-+...|.. .||+=++
T Consensus 221 n-~-y~~~s~l~YNP~d~~LY~wdn 243 (255)
T smart00284 221 N-M-YEYISMLDYNPNDRKLYAWNN 243 (255)
T ss_pred c-c-cccceeceeCCCCCeEEEEeC
Confidence 2 1 1223346677654 6887777
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=2.4 Score=36.72 Aligned_cols=206 Identities=11% Similarity=0.118 Sum_probs=108.4
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEE--ECCCCCCCcceeeeeEEeecCCcCCCCcceEEE--eCC-CCeEEEEEecCCCC
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQV--LVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAV--DRP-RNRLLVAFTDVLGN 125 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~--d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~--d~~-~g~l~v~~~D~~~~ 125 (335)
-.+.+|+|.|.++.+...+..|-++ +..+-+..+ .+..+.-.. +....+++ ++. .+.|.+. + ..++
T Consensus 92 iyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g---~dle~nmhd----gtirdl~fld~~~s~~~il~s-~-gagd 162 (350)
T KOG0641|consen 92 IYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATG---HDLEFNMHD----GTIRDLAFLDDPESGGAILAS-A-GAGD 162 (350)
T ss_pred EEEEEecCccCeEEecCCCceEEEEecccccccccC---cceeeeecC----CceeeeEEecCCCcCceEEEe-c-CCCc
Confidence 3577999999987777666665444 321111100 000011111 12334444 222 3455552 2 2222
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCC-cEEEEecCCcccccccccc
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~ 203 (335)
-.|+.-|-..|+....... . .-.=++.-. +|-++++.+....|.-+|..= .-+..+++ .|...+ -.
T Consensus 163 --c~iy~tdc~~g~~~~a~sg--h-----tghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~-~~~~~g--le 230 (350)
T KOG0641|consen 163 --CKIYITDCGRGQGFHALSG--H-----TGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN-DFHDGG--LE 230 (350)
T ss_pred --ceEEEeecCCCCcceeecC--C-----cccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccC-cccCCC--cc
Confidence 2366666555543311110 0 000133323 366888888877787777642 22333332 222110 00
Q ss_pred ccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 204 VFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 204 ~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
......++++|.|+|+++......-..+|+.++. .++.+--.. ....-+.+.|.-.+..+....+.+++.++..
T Consensus 231 ssavaav~vdpsgrll~sg~~dssc~lydirg~r-~iq~f~phs----adir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR-MIQRFHPHS----ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred cceeEEEEECCCcceeeeccCCCceEEEEeeCCc-eeeeeCCCc----cceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 1236789999999999998888888889998874 556553211 2245677877656556655457788777643
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.7 Score=40.26 Aligned_cols=147 Identities=15% Similarity=0.185 Sum_probs=86.9
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d 181 (335)
....|...+ +|..++.. ..++ +.|.+||+++++-...... +.....-+...|||..+++-+-.+....++
T Consensus 197 pVtsmqwn~-dgt~l~tA--S~gs--ssi~iWdpdtg~~~pL~~~-----glgg~slLkwSPdgd~lfaAt~davfrlw~ 266 (445)
T KOG2139|consen 197 PVTSMQWNE-DGTILVTA--SFGS--SSIMIWDPDTGQKIPLIPK-----GLGGFSLLKWSPDGDVLFAATCDAVFRLWQ 266 (445)
T ss_pred eeeEEEEcC-CCCEEeec--ccCc--ceEEEEcCCCCCccccccc-----CCCceeeEEEcCCCCEEEEecccceeeeeh
Confidence 457777775 67777742 2233 4699999998865422211 133444588999998777755544333332
Q ss_pred cC-CcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCc-------e--eEEEE-ec----
Q 039428 182 VE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEE-------E--EVKLI-EL---- 245 (335)
Q Consensus 182 ~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~-------~--~~~~~-~~---- 245 (335)
-. ....+ +|...+ ....+-+++|+| +|+++-.+.-+||++.-.++. + ....+ ++
T Consensus 267 e~q~wt~e----rw~lgs------grvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~t 336 (445)
T KOG2139|consen 267 ENQSWTKE----RWILGS------GRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVT 336 (445)
T ss_pred hcccceec----ceeccC------CceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhh
Confidence 22 11111 233221 147788999999 899999999999998765531 0 11111 11
Q ss_pred --cCCc-CCCCCCeEEEcCCCcEEEE
Q 039428 246 --RGGS-SLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 246 --~g~~-~~~~pdGia~d~~g~l~va 268 (335)
.++. ..+.+.-||.||.|...+.
T Consensus 337 i~ag~~l~cgeaq~lawDpsGeyLav 362 (445)
T KOG2139|consen 337 ICAGQRLCCGEAQCLAWDPSGEYLAV 362 (445)
T ss_pred hhcCcccccCccceeeECCCCCEEEE
Confidence 1111 1245889999999964444
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.1 Score=42.28 Aligned_cols=175 Identities=10% Similarity=0.057 Sum_probs=106.7
Q ss_pred EEEcCCCcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEe
Q 039428 42 YQYHSPSFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFT 120 (335)
Q Consensus 42 ~~~~~~~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~ 120 (335)
+.+.+-..-..|++|.+.-.-...+ ..+++|..||.......++++..+....... .....+++.+....+|...+
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~---~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE---DVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCC---cceehhhccccchhhheeec
Confidence 3444433346688998887666666 6678888887432221000111111221111 24567788877788888766
Q ss_pred cCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccCCcEEEEecCCcccccc
Q 039428 121 DVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKE 199 (335)
Q Consensus 121 D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~ 199 (335)
|. ..+..+|.++++........ +. ....|-+++.|- +.+..+.+..++|..+|+..-...+. .|..
T Consensus 248 dd-----~~L~iwD~R~~~~~~~~~~~--ah-~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh---~~e~-- 314 (422)
T KOG0264|consen 248 DD-----GKLMIWDTRSNTSKPSHSVK--AH-SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLH---TFEG-- 314 (422)
T ss_pred CC-----CeEEEEEcCCCCCCCccccc--cc-CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCce---eccC--
Confidence 54 46999999864211111111 11 345677999986 57888888899999999863221110 1111
Q ss_pred ccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCC
Q 039428 200 WYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~ 235 (335)
.......+.++|.. .++.+....+++.+.|+..
T Consensus 315 ---H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 315 ---HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred ---CCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 11236788999987 8888888899999999876
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.2 Score=30.82 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=28.5
Q ss_pred CCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeEC
Q 039428 111 PRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVD 162 (335)
Q Consensus 111 ~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd 162 (335)
++++|||++.+ . +.|.++|+.+++....+.. ...|.+++++
T Consensus 2 d~~~lyv~~~~--~---~~v~~id~~~~~~~~~i~v------g~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSG--S---NTVSVIDTATNKVIATIPV------GGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCC--C---CEEEEEECCCCeEEEEEEC------CCCCceEEeC
Confidence 46789996432 2 4699999998877755554 3467777764
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=94.76 E-value=4.3 Score=39.28 Aligned_cols=150 Identities=14% Similarity=0.122 Sum_probs=91.0
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEec
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIR 191 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~ 191 (335)
.+.|||.+ +. +.|+.=..+.+.... ... . ....++++..|+.+.|++......+..++ +-+....
T Consensus 339 ~~di~vGT--tr----N~iL~Gt~~~~f~~~-v~g----h-~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt-- 403 (626)
T KOG2106|consen 339 KGDILVGT--TR----NFILQGTLENGFTLT-VQG----H-GDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWT-- 403 (626)
T ss_pred CCcEEEee--cc----ceEEEeeecCCceEE-EEe----c-ccceeeEEcCCChhheeeccCcceEEEcc-CCceeEE--
Confidence 45588843 22 346665555543321 111 1 23678999999999999988877777777 3333211
Q ss_pred CCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC
Q 039428 192 SPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP 271 (335)
Q Consensus 192 ~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~ 271 (335)
..+..| .....|+|.| ....-+..|+.+++|.... ....+...+ .+ -.-|++.++|..+..+..
T Consensus 404 -~~~~d~--------~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~--~lv~~~~d~-~~---ls~v~ysp~G~~lAvgs~ 467 (626)
T KOG2106|consen 404 -KIIEDP--------AECADFHPSG-VVAVGTATGRWFVLDTETQ--DLVTIHTDN-EQ---LSVVRYSPDGAFLAVGSH 467 (626)
T ss_pred -EEecCc--------eeEeeccCcc-eEEEeeccceEEEEecccc--eeEEEEecC-Cc---eEEEEEcCCCCEEEEecC
Confidence 011111 5677888888 5556667899999998875 333333323 21 356888888876666555
Q ss_pred CCeEEEEEcCCCcEEEEEeee
Q 039428 272 YPSARLVESSDGWETASVVAK 292 (335)
Q Consensus 272 ~~~~~v~~~~~~~~~~~~~~~ 292 (335)
.|.+.+++.+++...-...+.
T Consensus 468 d~~iyiy~Vs~~g~~y~r~~k 488 (626)
T KOG2106|consen 468 DNHIYIYRVSANGRKYSRVGK 488 (626)
T ss_pred CCeEEEEEECCCCcEEEEeee
Confidence 577888877655333333333
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.66 E-value=3.4 Score=37.63 Aligned_cols=150 Identities=14% Similarity=0.131 Sum_probs=92.2
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC--cEEEEeCCCCeEEE
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG--NAYVTDVVSSKIWK 179 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G--~lyV~d~~~~~I~~ 179 (335)
....++++ + .|++++ +.+ ..|..||+........ +... ....+.+.|++.- +-.++.+..|.|..
T Consensus 45 sitavAVs---~-~~~aSG--ssD--etI~IYDm~k~~qlg~--ll~H---agsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 45 SITALAVS---G-PYVASG--SSD--ETIHIYDMRKRKQLGI--LLSH---AGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ceeEEEec---c-eeEecc--CCC--CcEEEEeccchhhhcc--eecc---ccceEEEEecCCcchhheeeecCCCcEEE
Confidence 45677775 3 566533 223 3599999976533211 1111 3455667777653 25566778888888
Q ss_pred EccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEE
Q 039428 180 VGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLAL 259 (335)
Q Consensus 180 ~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~ 259 (335)
++.+.-. . + .++.. .....|+|++.|.|.|-.+-.+++.+.-.++-.++ ...+..+. ..+.-+.+
T Consensus 112 w~~~~W~-~-~--~slK~-----H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr-~a~v~~L~-----~~at~v~w 176 (362)
T KOG0294|consen 112 WRVGSWE-L-L--KSLKA-----HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR-VAFVLNLK-----NKATLVSW 176 (362)
T ss_pred EEcCCeE-E-e--eeecc-----cccccceeEecCCCceEEEEcCCceeeeehhhcCc-cceeeccC-----CcceeeEE
Confidence 8776432 1 1 12221 12348999999999998888888888777776653 33333332 23667999
Q ss_pred cCCCc-EEEEecCCCeEEEEEcC
Q 039428 260 LSPTK-LVVAGNPYPSARLVESS 281 (335)
Q Consensus 260 d~~g~-l~va~~~~~~~~v~~~~ 281 (335)
++.|. .+|... +.+-+...+
T Consensus 177 ~~~Gd~F~v~~~--~~i~i~q~d 197 (362)
T KOG0294|consen 177 SPQGDHFVVSGR--NKIDIYQLD 197 (362)
T ss_pred cCCCCEEEEEec--cEEEEEecc
Confidence 99997 444444 667666654
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=94.53 E-value=4.6 Score=38.65 Aligned_cols=79 Identities=11% Similarity=0.145 Sum_probs=50.6
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-.+++|..+|+++.+...+|.+..|+. +|.- +. .+.... .....+.... .|+..++ ++.. ..+
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l----~~--tl~~Hk----gPI~slKWnk-~G~yilS-~~vD----~tt 300 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNK-DGNL----IS--TLGQHK----GPIFSLKWNK-KGTYILS-GGVD----GTT 300 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEec-Cchh----hh--hhhccC----CceEEEEEcC-CCCEEEe-ccCC----ccE
Confidence 468999999999999988999999974 5651 11 121111 2346788874 5544332 3332 358
Q ss_pred EEEECCCCeEEEEeec
Q 039428 131 AAYDLSTWKRLFLTQL 146 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~ 146 (335)
..||..+++......+
T Consensus 301 ilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 301 ILWDAHTGTVKQQFEF 316 (524)
T ss_pred EEEeccCceEEEeeee
Confidence 8899988877643333
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.53 E-value=3.2 Score=36.89 Aligned_cols=158 Identities=15% Similarity=0.210 Sum_probs=85.1
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-|+-|.- -|+..++.-.++.+|.++..+|.. ... +...... . .--..|.+.|.+|..+-| +..
T Consensus 55 iE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~----~w~--f~~~~~v---k-~~a~~d~~~glIycgshd------~~~ 117 (354)
T KOG4649|consen 55 IECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ----IWN--FVILETV---K-VRAQCDFDGGLIYCGSHD------GNF 117 (354)
T ss_pred eeeeeEE-ECCEEEEEEccCcEEEEEecchhh----eee--eeehhhh---c-cceEEcCCCceEEEecCC------CcE
Confidence 3444443 355556667788999998766641 111 1111111 1 122356567889995433 248
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCc-EEEEec----CCccccccccccc
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQ-LLSIIR----SPLFTAKEWYKNV 204 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~-~~~~~~----~~~~~~~~~~~~~ 204 (335)
+.+|+.+..-++...-. ......-++++ +|.+|++ ...|++.+++++.. ..+++. .+.|..| ..
T Consensus 118 yalD~~~~~cVykskcg-----G~~f~sP~i~~g~~sly~a-~t~G~vlavt~~~~~~~~~w~~~~~~PiF~sp----lc 187 (354)
T KOG4649|consen 118 YALDPKTYGCVYKSKCG-----GGTFVSPVIAPGDGSLYAA-ITAGAVLAVTKNPYSSTEFWAATRFGPIFASP----LC 187 (354)
T ss_pred EEecccccceEEecccC-----CceeccceecCCCceEEEE-eccceEEEEccCCCCcceehhhhcCCccccCc----ee
Confidence 89999876544332221 22333456777 7899998 45688889887643 222221 1333332 11
Q ss_pred cccCeEEEc-cCCeEEEEECCCCEEEEEeCCCC
Q 039428 205 FGLNGIVYH-PDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 205 ~~p~Gia~~-~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
.++ .+.+. =||+|.--+....+|||+...+.
T Consensus 188 v~~-sv~i~~VdG~l~~f~~sG~qvwr~~t~Gp 219 (354)
T KOG4649|consen 188 VGS-SVIITTVDGVLTSFDESGRQVWRPATKGP 219 (354)
T ss_pred ccc-eEEEEEeccEEEEEcCCCcEEEeecCCCc
Confidence 222 22222 26766655555578888776664
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=94.50 E-value=2.1 Score=40.37 Aligned_cols=135 Identities=13% Similarity=0.142 Sum_probs=61.6
Q ss_pred hcCCCce--eEEEcC-----CCcceeeeEEcCCCCEEEEE-ec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCc
Q 039428 34 MAKPATH--VYQYHS-----PSFLCETAKWDDVGRRFLVS-FL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNAT 103 (335)
Q Consensus 34 ~~d~~~~--~~~~~~-----~~~~pegia~d~~g~~~~~~-~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p 103 (335)
|.|+.++ .++|.. ..+|...-+|.++|+.++.. .. +..++.+|..+++ +. ++-..++ ...
T Consensus 14 ~~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~-----i~--QLTdg~g---~~~ 83 (386)
T PF14583_consen 14 WIDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE-----IT--QLTDGPG---DNT 83 (386)
T ss_dssp EE-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E-----EE--E---SS----B-T
T ss_pred EeCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE-----EE--ECccCCC---CCc
Confidence 4566653 244432 23566777889999766555 22 3579999976554 22 2322222 223
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCc-eeECCCCcEEEEeC----------
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADD-IAVDAEGNAYVTDV---------- 172 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~-~~vd~~G~lyV~d~---------- 172 (335)
.|..+.+++..+|.. .+. ..|+++|+++.+......++.. .. ..+ ..++.|++.++...
T Consensus 84 ~g~~~s~~~~~~~Yv-~~~-----~~l~~vdL~T~e~~~vy~~p~~---~~-g~gt~v~n~d~t~~~g~e~~~~d~~~l~ 153 (386)
T PF14583_consen 84 FGGFLSPDDRALYYV-KNG-----RSLRRVDLDTLEERVVYEVPDD---WK-GYGTWVANSDCTKLVGIEISREDWKPLT 153 (386)
T ss_dssp TT-EE-TTSSEEEEE-ETT-----TEEEEEETTT--EEEEEE--TT---EE-EEEEEEE-TTSSEEEEEEEEGGG-----
T ss_pred cceEEecCCCeEEEE-ECC-----CeEEEEECCcCcEEEEEECCcc---cc-cccceeeCCCccEEEEEEEeehhccCcc
Confidence 466677766665432 322 3599999999877655555321 11 122 23466777766421
Q ss_pred ------------CCCeEEEEccCCcEEE
Q 039428 173 ------------VSSKIWKVGVEGQLLS 188 (335)
Q Consensus 173 ------------~~~~I~~~d~~g~~~~ 188 (335)
...+|+++|.++...+
T Consensus 154 ~~~~f~e~~~a~p~~~i~~idl~tG~~~ 181 (386)
T PF14583_consen 154 KWKGFREFYEARPHCRIFTIDLKTGERK 181 (386)
T ss_dssp SHHHHHHHHHC---EEEEEEETTT--EE
T ss_pred ccHHHHHHHhhCCCceEEEEECCCCcee
Confidence 1368999998755444
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=6.2 Score=39.84 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=55.4
Q ss_pred CCCCCceeECCCCc--EEEEe------CCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEEC
Q 039428 153 KSTADDIAVDAEGN--AYVTD------VVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHM 223 (335)
Q Consensus 153 ~~~p~~~~vd~~G~--lyV~d------~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~ 223 (335)
...+...++.++|+ +|+.. .....||+.+.++....+..... ...-.|+||| .||+...
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~------------~t~PsWspDG~~lw~v~d 416 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHS------------LTRPSWSLDADAVWVVVD 416 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCC------------CCCceECCCCCceEEEec
Confidence 34678899999985 56652 23568898887665433221111 2344788886 6766532
Q ss_pred C-----------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEE
Q 039428 224 C-----------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARL 277 (335)
Q Consensus 224 ~-----------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v 277 (335)
. .+++++++.+++ ..+. ... ..+..+.+.+||. +.+... +++.|
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~g--e~~~-~~~-----g~Issl~wSpDG~RiA~i~~--g~v~V 472 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDAS--AVAS-RVP-----GPISELQLSRDGVRAAMIIG--GKVYL 472 (591)
T ss_pred CcceEEEeccCCCceEEEEeccCc--hhhh-ccC-----CCcCeEEECCCCCEEEEEEC--CEEEE
Confidence 2 234554444443 1111 111 2366788888874 433332 34554
|
|
| >KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.37 E-value=3.8 Score=43.50 Aligned_cols=189 Identities=15% Similarity=0.156 Sum_probs=114.3
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEE
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKV 180 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~ 180 (335)
....+.++..++.+|- +|.... .+.............. ..+.-.+.++++|-- +++|.+|.....|.+.
T Consensus 438 ~~~~~d~d~~~~~i~~--~d~~~~---~i~~~~~~~~~~~~~~-----~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~ 507 (877)
T KOG1215|consen 438 NAVALDFDVLNNRIYW--ADLSDE---KICRASQDGSSECELC-----GDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVA 507 (877)
T ss_pred cceEEEEEecCCEEEE--EeccCC---eEeeeccCCCccceEe-----ccCccccCcEEEEeccCCceecccCCceeEEE
Confidence 3456666665677777 455432 3555544433322211 122577889999975 6899999999999999
Q ss_pred ccCCcEEEEecCCccccccccccccccCeEEEccC-CeEEEEECC-CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEE
Q 039428 181 GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD-GFLIVIHMC-SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLA 258 (335)
Q Consensus 181 d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d-g~Lyvad~~-~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia 258 (335)
+.+|....++-... ...|..++++|. |.+|.++.. ..+|.|-.+++. ....+...+ ...|.|++
T Consensus 508 ~~~g~~~~vl~~~~---------l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~--~~~~l~~~~---~~~p~glt 573 (877)
T KOG1215|consen 508 DLDGSSRKVLVSKD---------LDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGS--ERAVLVTNG---ILWPNGLT 573 (877)
T ss_pred EccCCceeEEEecC---------CCCccceeeccccCeeEEecCCCCchhhhhcCCCC--CceEEEeCC---ccCCCcce
Confidence 97776433221111 134899999995 599999988 446888777775 333332222 35699999
Q ss_pred EcCC-CcEEEEecCCC-eEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEeCCeEEEEeccCC
Q 039428 259 LLSP-TKLVVAGNPYP-SARLVESSDGWETASVVAKFNGPTHRVATAATVKDGRVYLSHLLGL 319 (335)
Q Consensus 259 ~d~~-g~l~va~~~~~-~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~~~~~~ 319 (335)
+|-. ..+|-++.... .+..+..+ +.... ... ......|-++++..+++|-+.+...
T Consensus 574 ~d~~~~~~yw~d~~~~~~i~~~~~~-g~~r~-~~~---~~~~~~p~~~~~~~~~iyw~d~~~~ 631 (877)
T KOG1215|consen 574 IDYETDRLYWADAKLDYTIESANMD-GQNRR-VVD---SEDLPHPFGLSVFEDYIYWTDWSNR 631 (877)
T ss_pred EEeecceeEEEcccCCcceeeeecC-CCceE-Eec---cccCCCceEEEEecceeEEeecccc
Confidence 9955 56777766333 23333332 21111 111 1123446688888888886555433
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.34 E-value=3.6 Score=38.55 Aligned_cols=135 Identities=13% Similarity=0.118 Sum_probs=78.0
Q ss_pred EEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeEC-CCC--cEEEEeC-CCCeEEEEccCCcEEEEe
Q 039428 115 LLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVD-AEG--NAYVTDV-VSSKIWKVGVEGQLLSII 190 (335)
Q Consensus 115 l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd-~~G--~lyV~d~-~~~~I~~~d~~g~~~~~~ 190 (335)
+++.-.+..... ..+..+|.++++......-...+- ........+- ++| -+|+++. +-..|+.++.+++..+.+
T Consensus 198 l~~~~~nR~q~~-~~l~~~d~~tg~~~~~~~e~~~~W-v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~l 275 (353)
T PF00930_consen 198 LWVQWLNRDQNR-LDLVLCDASTGETRVVLEETSDGW-VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQL 275 (353)
T ss_dssp EEEEEEETTSTE-EEEEEEEECTTTCEEEEEEESSSS-SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEES
T ss_pred EEEEEcccCCCE-EEEEEEECCCCceeEEEEecCCcc-eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecc
Confidence 666544333222 567788887765432221111111 2333445543 554 3666663 235899999998876644
Q ss_pred cCCccccccccccccccC-eEEEccCC-eEEEEECC----CCEEEEEeCC-CCceeEEEEeccCCcCCCCCC-eEEEcCC
Q 039428 191 RSPLFTAKEWYKNVFGLN-GIVYHPDG-FLIVIHMC----SGNLFKIDIR-KEEEEVKLIELRGGSSLSLGD-GLALLSP 262 (335)
Q Consensus 191 ~~~~~~~~~~~~~~~~p~-Gia~~~dg-~Lyvad~~----~~~v~~~d~~-~~~~~~~~~~~~g~~~~~~pd-Gia~d~~ 262 (335)
-.+.+. .+ =+.+++++ .||+.... ...||+++.+ ++ .++.+.-. .... .+.+.++
T Consensus 276 T~G~~~----------V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~--~~~~LT~~-----~~~~~~~~~Spd 338 (353)
T PF00930_consen 276 TSGDWE----------VTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG--EPKCLTCE-----DGDHYSASFSPD 338 (353)
T ss_dssp S-SSS-----------EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT--EEEESSTT-----SSTTEEEEE-TT
T ss_pred ccCcee----------ecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC--CeEeccCC-----CCCceEEEECCC
Confidence 322222 22 46778876 88887765 4589999999 66 55555422 1234 7899999
Q ss_pred CcEEEE
Q 039428 263 TKLVVA 268 (335)
Q Consensus 263 g~l~va 268 (335)
|+.++-
T Consensus 339 g~y~v~ 344 (353)
T PF00930_consen 339 GKYYVD 344 (353)
T ss_dssp SSEEEE
T ss_pred CCEEEE
Confidence 987776
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.33 E-value=1.9 Score=40.46 Aligned_cols=135 Identities=14% Similarity=0.109 Sum_probs=82.3
Q ss_pred EEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEE
Q 039428 63 FLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRL 141 (335)
Q Consensus 63 ~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~ 141 (335)
.+++ ..+..|..||...... ..+.|. ++....+.+..++..|..+.-| +.+-++|..+.++.
T Consensus 314 ~~~SgH~DkkvRfwD~Rs~~~---------~~sv~~--gg~vtSl~ls~~g~~lLsssRD------dtl~viDlRt~eI~ 376 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRSADK---------TRSVPL--GGRVTSLDLSMDGLELLSSSRD------DTLKVIDLRTKEIR 376 (459)
T ss_pred eeeecccccceEEEeccCCce---------eeEeec--CcceeeEeeccCCeEEeeecCC------CceeeeecccccEE
Confidence 3444 5677899998432321 111222 2356677777645566664322 34889999988776
Q ss_pred EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEE-EecCCccccccccccccccCeEEEccCC-eEE
Q 039428 142 FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLS-IIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLI 219 (335)
Q Consensus 142 ~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~-~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Ly 219 (335)
......+.. ...-.+-+.|.|+|.+..+.+.+++|+.++..+...+ .+.... . ..+.+.++|++.| .|.
T Consensus 377 ~~~sA~g~k-~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~--s------~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 377 QTFSAEGFK-CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST--S------NAAITSLSWNPSGSGLL 447 (459)
T ss_pred EEeeccccc-cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC--C------CcceEEEEEcCCCchhh
Confidence 333221111 1244677999999998889999999999998765544 222111 1 1147889999988 666
Q ss_pred EEEC
Q 039428 220 VIHM 223 (335)
Q Consensus 220 vad~ 223 (335)
-++.
T Consensus 448 sadk 451 (459)
T KOG0288|consen 448 SADK 451 (459)
T ss_pred cccC
Confidence 5543
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=94.32 E-value=4.5 Score=37.64 Aligned_cols=100 Identities=14% Similarity=-0.007 Sum_probs=49.3
Q ss_pred CCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC--CCcceEEEeCCCCeEEEEEecCCCC------ccce
Q 039428 59 VGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG--NATMGIAVDRPRNRLLVAFTDVLGN------KYSA 129 (335)
Q Consensus 59 ~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~--~~p~Gi~~d~~~g~l~v~~~D~~~~------~~~~ 129 (335)
++.+|++. .....++++|..... . .|...+.+.. ..-.++++- ++.|||...-.... ..+.
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~------~--~W~~l~~~p~~~R~~~~~~~~--~~~iYv~GG~~~~~~~~~~~~~~~ 86 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPS------K--GWQKIADFPGGPRNQAVAAAI--DGKLYVFGGIGKANSEGSPQVFDD 86 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCC------C--CceECCCCCCCCcccceEEEE--CCEEEEEeCCCCCCCCCcceeccc
Confidence 45666666 445678999842111 0 1433333321 222455554 68999974321100 1146
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeE-CCCCcEEEEeC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAV-DAEGNAYVTDV 172 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~v-d~~G~lyV~d~ 172 (335)
+.+||+.+++-...... .+ .......++ --+|.|||...
T Consensus 87 v~~Yd~~~~~W~~~~~~-~p---~~~~~~~~~~~~~g~IYviGG 126 (346)
T TIGR03547 87 VYRYDPKKNSWQKLDTR-SP---VGLLGASGFSLHNGQAYFTGG 126 (346)
T ss_pred EEEEECCCCEEecCCCC-CC---CcccceeEEEEeCCEEEEEcC
Confidence 89999988754422111 11 111111122 24688999754
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.58 Score=43.13 Aligned_cols=155 Identities=11% Similarity=0.166 Sum_probs=100.3
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE 183 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~ 183 (335)
..+.++|-.-.|+++.+ .+ ..|+.||...+..+..+-+ ...+|.|+..|++..|++......+|.+|..
T Consensus 191 ~svkfNpvETsILas~~---sD--rsIvLyD~R~~~Pl~KVi~------~mRTN~IswnPeafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCA---SD--RSIVLYDLRQASPLKKVIL------TMRTNTICWNPEAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred eEEecCCCcchheeeec---cC--CceEEEecccCCccceeee------eccccceecCccccceeeccccccceehhhh
Confidence 56667764445555432 12 3599999988766533322 3578999999998888888888999999975
Q ss_pred CcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC
Q 039428 184 GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT 263 (335)
Q Consensus 184 g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g 263 (335)
--. +-+. .+. ........+.++|-|.=||+-+-+..|..|..+.+. ...+.-. ..++..-++.+..|.
T Consensus 260 ~l~-~p~~--v~~-----dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~-SRdiYht---kRMq~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 260 NLS-RPLN--VHK-----DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH-SRDIYHT---KRMQHVFCVKYSMDS 327 (433)
T ss_pred hhc-ccch--hhc-----ccceeEEEeccCCCcchhccccccceEEEeecCCCc-chhhhhH---hhhheeeEEEEeccc
Confidence 211 1000 011 011235678999999889998888988888888763 2222221 114456678888888
Q ss_pred cEEEEecCCCeEEEEEcC
Q 039428 264 KLVVAGNPYPSARLVESS 281 (335)
Q Consensus 264 ~l~va~~~~~~~~v~~~~ 281 (335)
..++++....++++....
T Consensus 328 kyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 328 KYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cEEEecCCCcceeeeecc
Confidence 888886644557766543
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.19 E-value=3.3 Score=41.93 Aligned_cols=162 Identities=17% Similarity=0.128 Sum_probs=99.4
Q ss_pred cceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 49 FLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
-|-.+|++.|-...||++ ..+++|..|+..+.+ |+. |....+ ..+.+++.|+ |..-|. +-..
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~----Vv~---W~Dl~~----lITAvcy~Pd-Gk~avI-Gt~~---- 472 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK----VVD---WNDLRD----LITAVCYSPD-GKGAVI-GTFN---- 472 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCcCe----eEe---ehhhhh----hheeEEeccC-CceEEE-EEec----
Confidence 367899999999999999 789999888866554 222 432232 4578999985 544443 2222
Q ss_pred ceEEEEECCCCeEEE--EeecCCCc-cCCCCCCceeECCCC--cEEEEeCCCCeEEEEccCCcEEEEecCCccccccccc
Q 039428 128 SALAAYDLSTWKRLF--LTQLSGKS-EEKSTADDIAVDAEG--NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~--~~~~~~~~-~~~~~p~~~~vd~~G--~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~ 202 (335)
+....|+..+.++.. .+...... .......|+.+.|.- ++.|| +...+|..+|...+.+. ..|....
T Consensus 473 G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT-SnDSrIRI~d~~~~~lv----~KfKG~~--- 544 (712)
T KOG0283|consen 473 GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT-SNDSRIRIYDGRDKDLV----HKFKGFR--- 544 (712)
T ss_pred cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe-cCCCceEEEeccchhhh----hhhcccc---
Confidence 247788888777653 23332110 112357788887642 58887 56679999987433221 1222100
Q ss_pred cccccCeEEEccCCeEEEEECCCCEEEEEeCCC
Q 039428 203 NVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 203 ~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~ 235 (335)
......--.|+.||.-+|+.+.+..||..+.+.
T Consensus 545 n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 545 NTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 112245567888996666666888888877643
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=4.6 Score=40.07 Aligned_cols=152 Identities=11% Similarity=-0.002 Sum_probs=77.7
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecCCCC-ccceEE
Q 039428 59 VGRRFLVSFLD-----GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDVLGN-KYSALA 131 (335)
Q Consensus 59 ~g~~~~~~~~~-----~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~~-~~~~v~ 131 (335)
++.+|+++..+ +.+.++|+.+.+ |...+.+.. ......++. ++.|||..+-.... ..+.+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~----------W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~ 409 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESK----------WREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVE 409 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCc----------eeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEE
Confidence 46677776322 468888854333 322222211 122344443 68999964311111 124689
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC--------CeEEEEccCCcEEEEecCCcccccccccc
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS--------SKIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~--------~~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
+||+.+++-....+.+.+ ... ..++--++.+|+....+ ..++++|+....-..+.. ...
T Consensus 410 ~yd~~t~~W~~~~~~p~~---r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~~~------ 476 (534)
T PHA03098 410 CFSLNTNKWSKGSPLPIS---HYG--GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS--LNF------ 476 (534)
T ss_pred EEeCCCCeeeecCCCCcc---ccC--ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC--CCc------
Confidence 999988755432222111 111 12233467899975421 348999987544332211 111
Q ss_pred ccccCeEEEccCCeEEEEECC-----CCEEEEEeCCCC
Q 039428 204 VFGLNGIVYHPDGFLIVIHMC-----SGNLFKIDIRKE 236 (335)
Q Consensus 204 ~~~p~Gia~~~dg~Lyvad~~-----~~~v~~~d~~~~ 236 (335)
...-.+++.- ++.||+.... .+.++++|+...
T Consensus 477 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 477 PRINASLCIF-NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred ccccceEEEE-CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 0112233333 6788886543 357888988876
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.07 E-value=5.3 Score=37.50 Aligned_cols=194 Identities=14% Similarity=0.132 Sum_probs=114.4
Q ss_pred EEEcCCCcceeeeEEcCCC-CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEe
Q 039428 42 YQYHSPSFLCETAKWDDVG-RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFT 120 (335)
Q Consensus 42 ~~~~~~~~~pegia~d~~g-~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~ 120 (335)
..+.+.+..-.-++|+|-- |++..+..++.|..|+..+|.. +- .+..|. ....+.++. +|.++++.+
T Consensus 125 v~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea----li---~l~hpd----~i~S~sfn~-dGs~l~Ttc 192 (472)
T KOG0303|consen 125 VELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA----LI---TLDHPD----MVYSMSFNR-DGSLLCTTC 192 (472)
T ss_pred EEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce----ee---ecCCCC----eEEEEEecc-CCceeeeec
Confidence 3344444445567898874 4555557789999999765651 11 223343 457888885 788888643
Q ss_pred cCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC---CCeEEEEccCCcEEEEecCCcccc
Q 039428 121 DVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV---SSKIWKVGVEGQLLSIIRSPLFTA 197 (335)
Q Consensus 121 D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~---~~~I~~~d~~g~~~~~~~~~~~~~ 197 (335)
- + ..|.++|+.+++++.... +.....|.-+.+-.+|.++-|... ..++-.+|++.- ..
T Consensus 193 k---D--KkvRv~dpr~~~~v~e~~----~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl----------~e 253 (472)
T KOG0303|consen 193 K---D--KKVRVIDPRRGTVVSEGV----AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNL----------EE 253 (472)
T ss_pred c---c--ceeEEEcCCCCcEeeecc----cccCCCcceeEEeccCceeeeccccccccceeccCcccc----------cC
Confidence 2 2 369999999998874331 112456667778788886665432 334555555421 11
Q ss_pred ccccccccccCeE---EEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 198 KEWYKNVFGLNGI---VYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 198 ~~~~~~~~~p~Gi---a~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
|.....+-..||+ -+|+|. -+|++--+++.|.-|....+...+.-+...... .--.||.+-|...+=|.
T Consensus 254 P~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~--epQRG~g~mPKRGl~Vs 326 (472)
T KOG0303|consen 254 PIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK--EPQRGMGFMPKRGLDVS 326 (472)
T ss_pred cceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC--Cccccccccccccccch
Confidence 1111122346676 457776 789999999989888887762123323221111 11367888776555555
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.99 E-value=1.1 Score=41.69 Aligned_cols=137 Identities=15% Similarity=0.099 Sum_probs=86.1
Q ss_pred ceeeeEEcCC--CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 50 LCETAKWDDV--GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 50 ~pegia~d~~--g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
++.++.|-+. ...|+....-+.+..+|+..++.| +.+++-. .+....+...+..+.||+ +++.+
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP--------V~~fd~~-E~~is~~~l~p~gn~Iy~--gn~~g--- 269 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP--------VAQFDFL-ENPISSTGLTPSGNFIYT--GNTKG--- 269 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCcc--------eeEeccc-cCcceeeeecCCCcEEEE--ecccc---
Confidence 5667777665 566666677789999997655532 3333321 234567777776778888 55553
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
.+..||.+++++... .+.+ . .+.+.++.++|.+.+..+.....-|..+|.+.+... ...|. ...+
T Consensus 270 -~l~~FD~r~~kl~g~-~~kg--~-tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll---~kvYv-------Ks~l 334 (412)
T KOG3881|consen 270 -QLAKFDLRGGKLLGC-GLKG--I-TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL---HKVYV-------KSRL 334 (412)
T ss_pred -hhheecccCceeecc-ccCC--c-cCCcceEEEcCCCceEEeeccceeEEEeecccchhh---hhhhh-------hccc
Confidence 499999998877621 1211 1 467788999999877777666666666777753221 11222 2347
Q ss_pred CeEEEccC
Q 039428 208 NGIVYHPD 215 (335)
Q Consensus 208 ~Gia~~~d 215 (335)
|+|.+.++
T Consensus 335 t~il~~~~ 342 (412)
T KOG3881|consen 335 TFILLRDD 342 (412)
T ss_pred cEEEecCC
Confidence 88888743
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.66 Score=45.83 Aligned_cols=182 Identities=15% Similarity=0.119 Sum_probs=94.4
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCc--eeEEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCC
Q 039428 5 LCFTKTLLFFFIISAIPIAYIISIELAIAMAKPAT--HVYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYS 82 (335)
Q Consensus 5 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~ 82 (335)
|||+|+=-+++=+++.. +....|.+=|..+ ....+.+..-.--++||+|+|++......+++|.++.+..+..
T Consensus 680 I~slRfHPLAadvLa~a-----syd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVA-----SYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred EEEEEecchhhhHhhhh-----hccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 67888776665554432 2344444434332 2223333334456999999999887778999999998643331
Q ss_pred CcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEE-ecCCCCccceEEEEECCCCe--EE--EEeecCCCccCCCCCC
Q 039428 83 PGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAF-TDVLGNKYSALAAYDLSTWK--RL--FLTQLSGKSEEKSTAD 157 (335)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~-~D~~~~~~~~v~~~d~~~~~--~~--~~~~~~~~~~~~~~p~ 157 (335)
++...++..+.+..-|.+-- +|++.++. .|.... .+|..||.++-. .+ ...+... + .-.
T Consensus 755 --------pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk~Se--RQv~~Y~Aq~l~~~pl~t~~lDvap--s-~Lv-- 818 (1012)
T KOG1445|consen 755 --------PVYEGKGPVGTRGARILWAC-DGRIVIVVGFDKSSE--RQVQMYDAQTLDLRPLYTQVLDVAP--S-PLV-- 818 (1012)
T ss_pred --------ccccCCCCccCcceeEEEEe-cCcEEEEecccccch--hhhhhhhhhhccCCcceeeeecccC--c-ccc--
Confidence 23333333333333333332 45555543 233222 247777765422 11 2222211 1 111
Q ss_pred ceeECCC-CcEEEEeCCCCeEEEEcc--CCcEEEEecCCccccccccccccccCeEEEccCC
Q 039428 158 DIAVDAE-GNAYVTDVVSSKIWKVGV--EGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG 216 (335)
Q Consensus 158 ~~~vd~~-G~lyV~d~~~~~I~~~d~--~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg 216 (335)
--.|.| +.+|++..+...|+.+.. +.-...-+ ..|..| ..-.||+|-+..
T Consensus 819 -P~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl--~~f~sp------~~hqGl~fl~K~ 871 (1012)
T KOG1445|consen 819 -PHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPL--APFMSP------VGHQGLAFLQKL 871 (1012)
T ss_pred -ccccCCCceEEEecCCCceEEEEEecCCCceeeec--ccccCC------Ccccceeeeccc
Confidence 123666 568888888778877653 22222111 123332 236788888754
|
|
| >PF14339 DUF4394: Domain of unknown function (DUF4394) | Back alignment and domain information |
|---|
Probab=93.88 E-value=4.2 Score=35.71 Aligned_cols=132 Identities=12% Similarity=0.104 Sum_probs=80.7
Q ss_pred CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEE--eecCCCccCCCCCCceeECCC-CcEEEEeCCCCeE
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFL--TQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKI 177 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~--~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I 177 (335)
....||.+-|.+|.||... +. ++|+.+|+.++..... ..+...- .....++-|.|- .++.|. +..++=
T Consensus 27 e~l~GID~Rpa~G~LYgl~-~~-----g~lYtIn~~tG~aT~vg~s~~~~al--~g~~~gvDFNP~aDRlRvv-s~~GqN 97 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLG-ST-----GRLYTINPATGAATPVGASPLTVAL--SGTAFGVDFNPAADRLRVV-SNTGQN 97 (236)
T ss_pred CeEEEEEeecCCCCEEEEe-CC-----CcEEEEECCCCeEEEeecccccccc--cCceEEEecCcccCcEEEE-ccCCcE
Confidence 4568999999999999973 22 4699999999976543 2222111 123566777775 678876 335677
Q ss_pred EEEccCCcEEEEe-cCCccccccc-cccccccCeEEEccC------C-eEEEEECCCCEEEEE-eCCCCceeEEEE
Q 039428 178 WKVGVEGQLLSII-RSPLFTAKEW-YKNVFGLNGIVYHPD------G-FLIVIHMCSGNLFKI-DIRKEEEEVKLI 243 (335)
Q Consensus 178 ~~~d~~g~~~~~~-~~~~~~~~~~-~~~~~~p~Gia~~~d------g-~Lyvad~~~~~v~~~-d~~~~~~~~~~~ 243 (335)
+|++++....... +.-.+...+. .+......+.|+... . .||--|...++|++. .++.+ .+..+
T Consensus 98 lR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~ppN~G--tL~~v 171 (236)
T PF14339_consen 98 LRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQNPPNDG--TLNTV 171 (236)
T ss_pred EEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEecCCCCC--cEEee
Confidence 8999985442211 1112221110 011233556676653 4 699999999999998 55555 44444
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=93.84 E-value=7.2 Score=38.27 Aligned_cols=155 Identities=18% Similarity=0.112 Sum_probs=81.9
Q ss_pred CCEEEEEe----cCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEEC
Q 039428 60 GRRFLVSF----LDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDL 135 (335)
Q Consensus 60 g~~~~~~~----~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~ 135 (335)
.+++++.. .....+.+| .+|. +. |....... ....+..-+ +|++++... ..+..+|.
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD-~~G~-----Vr---w~~~~~~~--~~~~~~~l~-nG~ll~~~~-------~~~~e~D~ 174 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLID-NNGD-----VR---WYLPLDSG--SDNSFKQLP-NGNLLIGSG-------NRLYEIDL 174 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEE-TTS------EE---EEE-GGGT----SSEEE-T-TS-EEEEEB-------TEEEEE-T
T ss_pred CcEEEEeCCCCCCCceEEEEC-CCcc-----EE---EEEccCcc--ccceeeEcC-CCCEEEecC-------CceEEEcC
Confidence 34666665 346789998 4676 22 32111110 111155554 888888543 35999999
Q ss_pred CCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC-------------CCCeEEEEccCCcEEEEecCCc-cc---c-
Q 039428 136 STWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-------------VSSKIWKVGVEGQLLSIIRSPL-FT---A- 197 (335)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-------------~~~~I~~~d~~g~~~~~~~~~~-~~---~- 197 (335)
.+. +.+...++... ...-+|+...++|++++.-. ....|..+|+.|+.+..+.-.. |. .
T Consensus 175 ~G~-v~~~~~l~~~~--~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~ 251 (477)
T PF05935_consen 175 LGK-VIWEYDLPGGY--YDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDT 251 (477)
T ss_dssp T---EEEEEE--TTE--E-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--T
T ss_pred CCC-EEEeeecCCcc--cccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCccccc
Confidence 754 55445553210 13457999999998655322 2578999998898887754211 10 0
Q ss_pred ---c---------cccccccccCeEEEcc-CCeEEEEECCCCEEEEEeCCCC
Q 039428 198 ---K---------EWYKNVFGLNGIVYHP-DGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 198 ---~---------~~~~~~~~p~Gia~~~-dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
+ .....-...|+|.+++ ++.|+++.+....|++||..++
T Consensus 252 ~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 252 VLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp TGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred ccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence 0 0112235689999999 6699999999999999997766
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.76 E-value=2.2 Score=42.84 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=89.8
Q ss_pred EEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-C
Q 039428 106 IAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-G 184 (335)
Q Consensus 106 i~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g 184 (335)
+++++.+..||.++. +.|..+|.+++... .+.... +......++++++|+...++-..+..+..++.. |
T Consensus 25 ~~~s~nG~~L~t~~~-------d~Vi~idv~t~~~~--l~s~~~-ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tg 94 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACG-------DRVIIIDVATGSIA--LPSGSN-EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTG 94 (775)
T ss_pred eeECCCCCEEEEecC-------ceEEEEEccCCcee--cccCCc-cchhhhheeeecCCccEEEEeeccceEEEEEcccc
Confidence 788874445555433 35999999998774 111111 225677889999998766665666666666654 4
Q ss_pred cEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc
Q 039428 185 QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK 264 (335)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~ 264 (335)
+..+.+.. .-..| .-.++++|.|.|..+-...+++.+.|+.++. -...+...+ +...-+.+.++-+
T Consensus 95 k~irswKa-~He~P--------vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-~th~fkG~g----GvVssl~F~~~~~ 160 (775)
T KOG0319|consen 95 KLIRSWKA-IHEAP--------VITMAFDPTGTLLATGGADGRVKVWDIKNGY-CTHSFKGHG----GVVSSLLFHPHWN 160 (775)
T ss_pred hHhHhHhh-ccCCC--------eEEEEEcCCCceEEeccccceEEEEEeeCCE-EEEEecCCC----ceEEEEEeCCccc
Confidence 44443221 01122 5688999999888888788999999998873 333443212 1234455555532
Q ss_pred --EEEEecCCCeEEEEEcC
Q 039428 265 --LVVAGNPYPSARLVESS 281 (335)
Q Consensus 265 --l~va~~~~~~~~v~~~~ 281 (335)
+.+++...+.+++.+..
T Consensus 161 ~~lL~sg~~D~~v~vwnl~ 179 (775)
T KOG0319|consen 161 RWLLASGATDGTVRVWNLN 179 (775)
T ss_pred hhheeecCCCceEEEEEcc
Confidence 23333333455555554
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.42 E-value=2.8 Score=38.11 Aligned_cols=193 Identities=13% Similarity=0.117 Sum_probs=105.5
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeec-CCcCC-CCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKE-DDVVG-NATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~-~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
-.++.++|.|..+.+...+..+..+|..+-+ -+++. |.... .....+..++ +++|||+. ... +
T Consensus 219 vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q---------cfvsanPd~qht~ai~~V~Ys~-t~~lYvTa-SkD----G 283 (430)
T KOG0640|consen 219 VRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ---------CFVSANPDDQHTGAITQVRYSS-TGSLYVTA-SKD----G 283 (430)
T ss_pred eeeEeecCCCceEEEecCCCceeEEecccee---------EeeecCcccccccceeEEEecC-CccEEEEe-ccC----C
Confidence 3799999999988888777888888754333 13322 22111 3456778885 89999963 222 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEE-EEecCCccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLL-SIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~-~~~~~~~~~~~~~~~~~~~ 206 (335)
.|..||--+++-+.. +.. ..+....-...|..+|+...+......+..+... |+.+ ++.+.+ .+. .+...
T Consensus 284 ~IklwDGVS~rCv~t--~~~-AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg-~tg----rq~~r 355 (430)
T KOG0640|consen 284 AIKLWDGVSNRCVRT--IGN-AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG-TTG----RQKHR 355 (430)
T ss_pred cEEeeccccHHHHHH--HHh-hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCC-ccc----chhhh
Confidence 488898655432211 111 1113445567788899776665444444434332 2332 222211 000 01122
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
.+.+-=+.+.++++-|..++.+--.|..... .+..+.+ | + -+.+.-+.-.|.+-.|+++.
T Consensus 356 tqAvFNhtEdyVl~pDEas~slcsWdaRtad-r~~l~sl-g-H-n~a~R~i~HSP~~p~FmTcs 415 (430)
T KOG0640|consen 356 TQAVFNHTEDYVLFPDEASNSLCSWDARTAD-RVALLSL-G-H-NGAVRWIVHSPVEPAFMTCS 415 (430)
T ss_pred hhhhhcCccceEEccccccCceeeccccchh-hhhhccc-C-C-CCCceEEEeCCCCCceeeec
Confidence 3333323344777777788888877776642 3333433 2 1 12356666667666777755
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.24 E-value=1.3 Score=42.69 Aligned_cols=95 Identities=17% Similarity=0.304 Sum_probs=55.4
Q ss_pred ceeECCCCc-EEEEeC--CCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCC--EEEEE
Q 039428 158 DIAVDAEGN-AYVTDV--VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSG--NLFKI 231 (335)
Q Consensus 158 ~~~vd~~G~-lyV~d~--~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~--~v~~~ 231 (335)
.-++.|||+ +.++-. .+..||.+|.+++....+.+. + .. -..-.++||| +++++....+ +|+++
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~-~--------gi-~~~Ps~spdG~~ivf~Sdr~G~p~I~~~ 311 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG-F--------GI-NTSPSWSPDGSKIVFTSDRGGRPQIYLY 311 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccC-C--------cc-ccCccCCCCCCEEEEEeCCCCCcceEEE
Confidence 456778885 444322 456899999988775432110 0 01 1244788999 6655544433 79999
Q ss_pred eCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 232 DIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 232 d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
++++. .++.+...+.. ..--.+.++|..++-
T Consensus 312 ~~~g~--~~~riT~~~~~----~~~p~~SpdG~~i~~ 342 (425)
T COG0823 312 DLEGS--QVTRLTFSGGG----NSNPVWSPDGDKIVF 342 (425)
T ss_pred CCCCC--ceeEeeccCCC----CcCccCCCCCCEEEE
Confidence 99987 45555443322 223445677764444
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.24 E-value=11 Score=38.41 Aligned_cols=200 Identities=20% Similarity=0.230 Sum_probs=119.6
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCC--CCc---ceee--eeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEY--SPG---TVLE--EVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~--~~~---~v~~--~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
-+.++..|++.-+++...+.+|..||-. -. .|+ ++++ +.+.+..+ .....+.++| +|++.++. -.
T Consensus 457 IWsi~~~pD~~g~vT~saDktVkfWdf~-l~~~~~gt~~k~lsl~~~rtLel~----ddvL~v~~Sp-dgk~LaVs--LL 528 (888)
T KOG0306|consen 457 IWSISLSPDNKGFVTGSADKTVKFWDFK-LVVSVPGTQKKVLSLKHTRTLELE----DDVLCVSVSP-DGKLLAVS--LL 528 (888)
T ss_pred eeeeeecCCCCceEEecCCcEEEEEeEE-EEeccCcccceeeeeccceEEecc----ccEEEEEEcC-CCcEEEEE--ec
Confidence 4677888998877777778887766521 00 000 0010 00111122 2356888887 67766642 11
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCC-CceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCcccccccc
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTA-DDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWY 201 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p-~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~ 201 (335)
. +.+.+|=.++-+.. ..+-+ ...| --|-+.+|..+.||.+....|-.+-.+ |.-.+ ..|.-
T Consensus 529 d---nTVkVyflDtlKFf--lsLYG----HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK----S~fAH---- 591 (888)
T KOG0306|consen 529 D---NTVKVYFLDTLKFF--LSLYG----HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK----SFFAH---- 591 (888)
T ss_pred c---CeEEEEEecceeee--eeecc----cccceeEEeccCCcCeEEeccCCCceEEeccccchhhh----hhhcc----
Confidence 1 24666666654433 22211 1222 346677899999998876666666554 32221 11220
Q ss_pred ccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 202 KNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.-....+.|-|+.++|++-...++|...|-..-+ ..+.+. + + .....-+++.++|.+.|+.....+++...-.
T Consensus 592 --dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe-~iq~L~--~-H-~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 592 --DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE-EIQKLD--G-H-HSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred --cCceeEEEEcccceeEEEecCcceEEeechhhhh-hheeec--c-c-hheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 1125678999988999999999999998876542 334443 3 2 2447889999999999987755677776654
Q ss_pred C
Q 039428 282 D 282 (335)
Q Consensus 282 ~ 282 (335)
+
T Consensus 665 d 665 (888)
T KOG0306|consen 665 D 665 (888)
T ss_pred C
Confidence 4
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=93.23 E-value=9 Score=37.49 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=95.1
Q ss_pred cceEEEeCCCCeEEEEEecCC-CC-ccceEEEEECCCCeEEEEeecCCCccCCCCCCcee-ECCCCcEEEEeCC-----C
Q 039428 103 TMGIAVDRPRNRLLVAFTDVL-GN-KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIA-VDAEGNAYVTDVV-----S 174 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~-~~-~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~-vd~~G~lyV~d~~-----~ 174 (335)
-++.++. ++.||+...... .. ..+.+++||+++.+-.. .......+ .....+.+ +--++.+||.... .
T Consensus 168 ~h~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P-~~~~~~~~~v~~~~~lYvfGG~~~~~~~ 243 (470)
T PLN02193 168 SHGIAQV--GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVP-HLSCLGVRMVSIGSTLYVFGGRDASRQY 243 (470)
T ss_pred ccEEEEE--CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCC-CCcccceEEEEECCEEEEECCCCCCCCC
Confidence 3555555 578998633111 11 11358999998865432 11110000 00111221 2235679997432 3
Q ss_pred CeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECC-----CCEEEEEeCCCCceeEEEEeccCCc
Q 039428 175 SKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC-----SGNLFKIDIRKEEEEVKLIELRGGS 249 (335)
Q Consensus 175 ~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~-----~~~v~~~d~~~~~~~~~~~~~~g~~ 249 (335)
+.++++|+....-..+.. ... .+....-..++.. ++.|||.-.. .+.++++|+... ....+...+..
T Consensus 244 ndv~~yD~~t~~W~~l~~--~~~---~P~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~ 315 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTP--VEE---GPTPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDK--KWFHCSTPGDS 315 (470)
T ss_pred ccEEEEECCCCEEEEcCc--CCC---CCCCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCC--EEEeCCCCCCC
Confidence 579999998654332211 000 0111122344443 6688886432 246888998876 44444322211
Q ss_pred CC-CCCCeEEEcCCCcEEEEecC----CCeEEEEEcCCC-cEEEEEeeeecCCCCCcceEEEEeCCeEEE
Q 039428 250 SL-SLGDGLALLSPTKLVVAGNP----YPSARLVESSDG-WETASVVAKFNGPTHRVATAATVKDGRVYL 313 (335)
Q Consensus 250 ~~-~~pdGia~d~~g~l~va~~~----~~~~~v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV 313 (335)
.. ..-..+++. ++++|+.... .+.+.+++...+ |......+.. |..+.-.+++.-+++|||
T Consensus 316 ~~~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~--P~~R~~~~~~~~~~~iyv 382 (470)
T PLN02193 316 FSIRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVR--PSERSVFASAAVGKHIVI 382 (470)
T ss_pred CCCCCCcEEEEE-CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCC--CCCcceeEEEEECCEEEE
Confidence 00 111234433 5788887431 255777877655 7654332222 222222234445788887
|
|
| >PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.12 Score=31.54 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=18.6
Q ss_pred CCCCceeECCCCcEEEEeCCCC
Q 039428 154 STADDIAVDAEGNAYVTDVVSS 175 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~ 175 (335)
..+++|++|++|++||+...++
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eeEEEEEECCCCCEEEEEeecC
Confidence 5689999999999999976544
|
SBBP stands for Seven Bladed Beta Propeller. |
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=93.18 E-value=5.9 Score=35.28 Aligned_cols=150 Identities=16% Similarity=0.131 Sum_probs=80.8
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC--------CCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 59 VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV--------GNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 59 ~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~--------~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
+|.+||-.....+|.++|..++. +..+ ..+...... +..-..+++| .+-|||.-+.......-.|
T Consensus 78 ngslYY~~~~s~~IvkydL~t~~----v~~~-~~L~~A~~~n~~~y~~~~~t~iD~AvD--E~GLWvIYat~~~~g~ivv 150 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTTRS----VVAR-RELPGAGYNNRFPYYWSGYTDIDFAVD--ENGLWVIYATEDNNGNIVV 150 (250)
T ss_pred CCcEEEEecCCceEEEEECcCCc----EEEE-EECCccccccccceecCCCceEEEEEc--CCCEEEEEecCCCCCcEEE
Confidence 46677776778899999965443 2212 122111111 0122567777 4559987554332211457
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC---CeE-EEEccCCcEEEEecCCccccccccccccc
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS---SKI-WKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~---~~I-~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
.++|+++-+++...+..-.. ...-|...+ =|.||++++.. .+| +.+|...+......- .|.. ....
T Consensus 151 skld~~tL~v~~tw~T~~~k--~~~~naFmv--CGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i-~f~~-----~~~~ 220 (250)
T PF02191_consen 151 SKLDPETLSVEQTWNTSYPK--RSAGNAFMV--CGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSI-PFPN-----PYGN 220 (250)
T ss_pred EeeCcccCceEEEEEeccCc--hhhcceeeE--eeEEEEEEECCCCCcEEEEEEECCCCceeceee-eecc-----ccCc
Confidence 78999887776444332111 122222222 38899998764 333 567776443322111 1221 2234
Q ss_pred cCeEEEccC-CeEEEEECCC
Q 039428 207 LNGIVYHPD-GFLIVIHMCS 225 (335)
Q Consensus 207 p~Gia~~~d-g~Lyvad~~~ 225 (335)
...|.++|. ..||+-|.+.
T Consensus 221 ~~~l~YNP~dk~LY~wd~G~ 240 (250)
T PF02191_consen 221 ISMLSYNPRDKKLYAWDNGY 240 (250)
T ss_pred eEeeeECCCCCeEEEEECCe
Confidence 778899995 4899887543
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=93.11 E-value=7.1 Score=35.95 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=58.6
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 59 VGRRFLVSFLD-----GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 59 ~g~~~~~~~~~-----~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
++.+|++...+ ..++++|..+..+ + ..+...+.+.. ..-.+.++. ++.|||......+...+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w-----~-~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~ 143 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKE-----E-LICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYL 143 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCce-----e-eeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEE
Confidence 45677776321 4688888543321 0 01222232221 122344444 689999743211111256999
Q ss_pred EECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC----CeEEEEccCCcE
Q 039428 133 YDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS----SKIWKVGVEGQL 186 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~----~~I~~~d~~g~~ 186 (335)
||+.+.+-....+.+. . .+....++--++++||..... ..++++|++...
T Consensus 144 yd~~~~~W~~~~~~p~--~--~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 144 FNLETQEWFELPDFPG--E--PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred EcCCCCCeeECCCCCC--C--CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 9998775442222211 1 122223333467899975432 346788887544
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.09 E-value=7.7 Score=36.31 Aligned_cols=141 Identities=14% Similarity=0.139 Sum_probs=86.9
Q ss_pred ceEEEEECCCCeEEEEe-ecCCCccC---CCCCCceeECCC--CcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccc
Q 039428 128 SALAAYDLSTWKRLFLT-QLSGKSEE---KSTADDIAVDAE--GNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWY 201 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~-~~~~~~~~---~~~p~~~~vd~~--G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~ 201 (335)
+.+-.||++..+.+|.+ +++..--+ +-.+.|+.|-+. .+-+++-+..+.+..+|+.-+..-+. .|...
T Consensus 173 n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~---~fd~~--- 246 (412)
T KOG3881|consen 173 NELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA---QFDFL--- 246 (412)
T ss_pred cceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee---Eeccc---
Confidence 45778888877655443 22211001 355678888776 68999999999999999874322111 11110
Q ss_pred ccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 202 KNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
-.....+++.|+| .+|+++ ..++|..||.++++ .... ...| . -+.+.++-.++.+.+..+..=..-+||.+.
T Consensus 247 --E~~is~~~l~p~gn~Iy~gn-~~g~l~~FD~r~~k-l~g~-~~kg-~-tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 247 --ENPISSTGLTPSGNFIYTGN-TKGQLAKFDLRGGK-LLGC-GLKG-I-TGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred --cCcceeeeecCCCcEEEEec-ccchhheecccCce-eecc-ccCC-c-cCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 1225678899999 778777 46789999999873 2222 1222 1 245889999987776555432233666654
Q ss_pred C
Q 039428 281 S 281 (335)
Q Consensus 281 ~ 281 (335)
.
T Consensus 320 k 320 (412)
T KOG3881|consen 320 K 320 (412)
T ss_pred c
Confidence 3
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.9 Score=47.55 Aligned_cols=211 Identities=13% Similarity=0.154 Sum_probs=114.4
Q ss_pred eeeEEcCCCCE---EEEE-ecCCeEEEEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 52 ETAKWDDVGRR---FLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 52 egia~d~~g~~---~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
..++|.+-|.. ++++ ..+|.|.-||+. .-..+ .+..++. ..... +...|+.|++.++++.+..++.
T Consensus 68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~-~~~~~---~~~~~la~~~~h~-G~V~gLDfN~~q~nlLASGa~~---- 138 (1049)
T KOG0307|consen 68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPA-SIIAN---ASEEVLATKSKHT-GPVLGLDFNPFQGNLLASGADD---- 138 (1049)
T ss_pred eeeeecccCCCccceeeccccCCceEEecch-hhccC---cchHHHhhhcccC-CceeeeeccccCCceeeccCCC----
Confidence 56788777766 3444 778999999853 31000 0001221 11111 3568999998777787742221
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC----cEEEEeCCCCeEEEEccCCcEEEEecCCccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG----NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G----~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~ 202 (335)
+.|+.||+..-+.-+ .. + ....+.+|.+-... .++.+.+.++++..+|.+.+... + .+.. .+
T Consensus 139 -geI~iWDlnn~~tP~--~~---~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi-i---~ls~---~~ 204 (1049)
T KOG0307|consen 139 -GEILIWDLNKPETPF--TP---G-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI-I---KLSD---TP 204 (1049)
T ss_pred -CcEEEeccCCcCCCC--CC---C-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc-c---cccc---CC
Confidence 469999987522111 11 1 14566777766543 47888888899999998866322 1 1111 01
Q ss_pred cccccCeEEEccCC--eEEEEECCCC--EEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEE
Q 039428 203 NVFGLNGIVYHPDG--FLIVIHMCSG--NLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARL 277 (335)
Q Consensus 203 ~~~~p~Gia~~~dg--~Lyvad~~~~--~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v 277 (335)
.....++|+|+|++ +|+++...++ .|...|++-.....+.+.. + -.+.-.|.+.+.+ ++.+++..++++.+
T Consensus 205 ~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~---H-~~GilslsWc~~D~~lllSsgkD~~ii~ 280 (1049)
T KOG0307|consen 205 GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG---H-QRGILSLSWCPQDPRLLLSSGKDNRIIC 280 (1049)
T ss_pred CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc---c-ccceeeeccCCCCchhhhcccCCCCeeE
Confidence 11346799999998 6666654433 3444454332112233321 1 1234566666665 66666664444433
Q ss_pred EEcCCCcEEEEEeeee
Q 039428 278 VESSDGWETASVVAKF 293 (335)
Q Consensus 278 ~~~~~~~~~~~~~~~~ 293 (335)
.... ++|+++++
T Consensus 281 wN~~----tgEvl~~~ 292 (1049)
T KOG0307|consen 281 WNPN----TGEVLGEL 292 (1049)
T ss_pred ecCC----CceEeeec
Confidence 3332 34555544
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=93.04 E-value=7.2 Score=35.89 Aligned_cols=119 Identities=15% Similarity=0.109 Sum_probs=60.0
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeE--EEEeecCCCccCCCCCCceeECCCCcEEEEeCC-----CCeEEEEccCC
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKR--LFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-----SSKIWKVGVEG 184 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-----~~~I~~~d~~g 184 (335)
++.||+..........+.+.+||+++.+- .+. ..+... ...-+..++--++++||.... ...++++|+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~-~~~~lp--~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICE-TIGNLP--FTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeee-EcCCCC--cCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCC
Confidence 57899864321111125688999877653 111 121111 111122223346789997542 35789999875
Q ss_pred cEEEEecCCccccccccccccccCeEEEccCCeEEEEECCC----CEEEEEeCCCCceeEEEE
Q 039428 185 QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCS----GNLFKIDIRKEEEEVKLI 243 (335)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~----~~v~~~d~~~~~~~~~~~ 243 (335)
..-..+. .+.. . ......+..-++.|||.-..+ ..++++|+... ....+
T Consensus 149 ~~W~~~~--~~p~-----~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~--~W~~~ 201 (323)
T TIGR03548 149 QEWFELP--DFPG-----E-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN--QWQKV 201 (323)
T ss_pred CCeeECC--CCCC-----C-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC--eeEEC
Confidence 4322111 1110 0 112223334467899875432 24688999876 44444
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.95 E-value=6.4 Score=41.59 Aligned_cols=205 Identities=11% Similarity=0.081 Sum_probs=114.3
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEE
Q 039428 55 KWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYD 134 (335)
Q Consensus 55 a~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d 134 (335)
.|-.+...++++.....|..||. +.+. + ....|--+...+..+.-|-.+|+++++.-+. +.|..||
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa-~~E~---~-----~~diP~~s~t~vTaLS~~~~~gn~i~AGfaD-----GsvRvyD 1237 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDA-HKEQ---V-----VADIPYGSSTLVTALSADLVHGNIIAAGFAD-----GSVRVYD 1237 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEec-ccce---e-----EeecccCCCccceeecccccCCceEEEeecC-----CceEEee
Confidence 45555556667655678899985 4541 1 2222322334567777765567787753211 3589999
Q ss_pred CCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEc
Q 039428 135 LSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYH 213 (335)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~ 213 (335)
.+.-.....++...+.........+.+-+.|. =.|+.+.+|.|+.+|........+-+...... -+.....|.+.
T Consensus 1238 ~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~----yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1238 RRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE----YGSALTALTVH 1313 (1387)
T ss_pred cccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc----cCccceeeeec
Confidence 75432211111111111111256777777774 37888999999999998743221100000000 01126678888
Q ss_pred cCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCC---cCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 214 PDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGG---SSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 214 ~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~---~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
++--++.+-+. ..|..++..++ ....+...+. .....+.-+++.|..-+.++++..+.+.++..
T Consensus 1314 ~hapiiAsGs~-q~ikIy~~~G~--~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1314 EHAPIIASGSA-QLIKIYSLSGE--QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred cCCCeeeecCc-ceEEEEecChh--hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence 77778777655 88888899887 3333322111 11234677888887766666664455665543
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=92.67 E-value=15 Score=38.60 Aligned_cols=122 Identities=14% Similarity=0.127 Sum_probs=75.7
Q ss_pred CCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEe
Q 039428 154 STADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKID 232 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d 232 (335)
+-..|++-+|++.+.++-+..++|..++... +.++++.. ....+-|++|||-|+-+.+.++++.|..++
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~----------H~s~VKGvs~DP~Gky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG----------HQSLVKGVSWDPIGKYFASQSDDRTLKVWR 199 (942)
T ss_pred CccceeccCCCccEEEEecccceEEEEccccceeeeeeec----------ccccccceEECCccCeeeeecCCceEEEEE
Confidence 4556788999999999999999999998763 22232221 112378999999998888999998887777
Q ss_pred CCCCceeEEEEeccCC-cCC-CCCCeEEEcCCCcEEEE-ec---CCCeEEEEEcCCCcEEE
Q 039428 233 IRKEEEEVKLIELRGG-SSL-SLGDGLALLSPTKLVVA-GN---PYPSARLVESSDGWETA 287 (335)
Q Consensus 233 ~~~~~~~~~~~~~~g~-~~~-~~pdGia~d~~g~l~va-~~---~~~~~~v~~~~~~~~~~ 287 (335)
+..-+ ....+.-+-+ .++ ..-.-+...|||..+++ +. +...+.++. .+.|+..
T Consensus 200 t~dw~-i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie-R~tWk~~ 258 (942)
T KOG0973|consen 200 TSDWG-IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE-RGTWKVD 258 (942)
T ss_pred cccce-eeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe-cCCceee
Confidence 65531 2233321100 000 11234556788886666 22 223455554 3557743
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.44 E-value=9.7 Score=35.83 Aligned_cols=197 Identities=11% Similarity=0.173 Sum_probs=107.3
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..+|+..+|.++-+...+|.+.+|+-|.-.. .+.... .......|.+++ ++.+.+.... ....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t---------~l~e~~-~~~eV~DL~FS~-dgk~lasig~------d~~~ 210 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT---------ILEEIA-HHAEVKDLDFSP-DGKFLASIGA------DSAR 210 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh---------hhhhHh-hcCccccceeCC-CCcEEEEecC------CceE
Confidence 4678888887777666678777776233331 111111 113467899997 7766664331 1367
Q ss_pred EEECCCCeEE-EEeecCCCccCCCCCCceeECCCC---cEEEEeCC--CCeEEEEccC---C-cEEEEecCCcccccccc
Q 039428 132 AYDLSTWKRL-FLTQLSGKSEEKSTADDIAVDAEG---NAYVTDVV--SSKIWKVGVE---G-QLLSIIRSPLFTAKEWY 201 (335)
Q Consensus 132 ~~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~~G---~lyV~d~~--~~~I~~~d~~---g-~~~~~~~~~~~~~~~~~ 201 (335)
+|+.+++..+ ...+. .+.....-..+..|+ .+|++... .+.|...+.. + +..+ +.. ..
T Consensus 211 VW~~~~g~~~a~~t~~----~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~-----~~~---~~ 278 (398)
T KOG0771|consen 211 VWSVNTGAALARKTPF----SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR-----LRK---KI 278 (398)
T ss_pred EEEeccCchhhhcCCc----ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc-----hhh---hh
Confidence 7888777333 11111 111222334444443 67776543 3444443221 1 1111 000 01
Q ss_pred ccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 202 KNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
........++++.||++..--+.+|.|..++...-+ ..+.++-. + .....++++.|+-+....-...+...|+...
T Consensus 279 ~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq-~~~~vk~a--H-~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 279 KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQ-RLQYVKEA--H-LGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceee-eeEeehhh--h-eeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 123457899999999766666679999999887643 44444321 2 3357899999987654442223556665543
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.40 E-value=4.2 Score=40.45 Aligned_cols=205 Identities=14% Similarity=0.099 Sum_probs=114.2
Q ss_pred EEcCCCCE-EEEEecCCeEEEEECCCCCCCcceeeeeEEeecC---CcC--CCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 55 KWDDVGRR-FLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKED---DVV--GNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 55 a~d~~g~~-~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~---~~~--~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
-.|..++. +|.+..++.|..|+.. ..+ . ..+.+ .+. -.+.+.|+.--....|.-|+.|+
T Consensus 31 q~da~~~ryLfTgGRDg~i~~W~~~-~d~-----~---~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDt------ 95 (735)
T KOG0308|consen 31 QLDAPNGRYLFTGGRDGIIRLWSVT-QDS-----N---EPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDT------ 95 (735)
T ss_pred cccCCCCceEEecCCCceEEEeccc-ccc-----C---CcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCc------
Confidence 34555555 5555889999999742 221 0 10111 000 02456666553233555554554
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeE-CCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccc--cccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAV-DAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKE--WYKNVF 205 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~v-d~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~--~~~~~~ 205 (335)
.|..|+...+-......+ +....+..-++. .++..++++....++|+.+|.+....+...+-....-. ..+...
T Consensus 96 TVK~W~~~~~~~~c~sti---r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFCMSTI---RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCcchhHhhh---hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 588898865431111112 111345556776 56677999988899999999875433211110000000 012233
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
....+|..+.|.++|+-...+-|..+|+...+ ++..+.| + -....-+.+++||+=.++....+.|++.++..
T Consensus 173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~~---kimkLrG-H-TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK---KIMKLRG-H-TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred ceeeeecCCcceEEEecCcccceEEecccccc---ceeeeec-c-ccceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence 46778888888999998888888888998864 2333334 2 13356777888886555533235677766653
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=92.38 E-value=5.3 Score=37.36 Aligned_cols=164 Identities=16% Similarity=0.098 Sum_probs=87.4
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
..+..++.+++++++++.....+.+.++- .++.++ .+ +...-.. ..++..+.+..+.-.+.| .|..++. .
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~-~~~~~~--~k---l~~~~~v-~~~~~ai~~~~~~~sv~v--~dkagD~-~ 132 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDY-RENPKG--AK---LLDVSCV-PKRPTAISFIREDTSVLV--ADKAGDV-Y 132 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEE-ecCCCc--ce---eeeEeec-ccCcceeeeeeccceEEE--EeecCCc-e
Confidence 35677888899998888855656544442 122100 11 2211110 136778887754555555 4655441 1
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
.+..+....+..+ +..+. .....|+++.+|+...++--....|++....+.... ..++.+ ......
T Consensus 133 ~~di~s~~~~~~~-----~~lGh-vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I---esfclG-----H~eFVS 198 (390)
T KOG3914|consen 133 SFDILSADSGRCE-----PILGH-VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI---ESFCLG-----HKEFVS 198 (390)
T ss_pred eeeeecccccCcc-----hhhhh-hhhhheeeecCCCCEEEEecCCceEEEEecCcccch---hhhccc-----cHhhee
Confidence 2223322222211 01122 578889999999875555333345555544332221 011110 122356
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCc
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEE 237 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~ 237 (335)
.|++. +++++.+..+++.|+..|+..++
T Consensus 199 ~isl~-~~~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 199 TISLT-DNYLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred eeeec-cCceeeecCCCCcEEEEecccCC
Confidence 78888 55666777888888888888764
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=92.25 E-value=5.6 Score=41.61 Aligned_cols=128 Identities=13% Similarity=0.145 Sum_probs=78.5
Q ss_pred CCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCC-------cccc-ccccccccccCeEEEccCCeEEEEECC
Q 039428 154 STADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSP-------LFTA-KEWYKNVFGLNGIVYHPDGFLIVIHMC 224 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~-------~~~~-~~~~~~~~~p~Gia~~~dg~Lyvad~~ 224 (335)
.-.+-+.+.+||..+.+.+...-|.++.... .....+++. .... --......-..-++++|++.++++-.-
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~ 149 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSL 149 (942)
T ss_pred CceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecc
Confidence 3445567889997666666655555554441 111111110 0000 000111223677899999999999999
Q ss_pred CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEE
Q 039428 225 SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETA 287 (335)
Q Consensus 225 ~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~ 287 (335)
.++|..++....+ ...++. + + ...+-|+.+||-|+.+.+......+.|.+..+ |...
T Consensus 150 DnsViiwn~~tF~-~~~vl~--~-H-~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~ 206 (942)
T KOG0973|consen 150 DNSVIIWNAKTFE-LLKVLR--G-H-QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIE 206 (942)
T ss_pred cceEEEEccccce-eeeeee--c-c-cccccceEECCccCeeeeecCCceEEEEEccc-ceee
Confidence 9999999988763 444444 2 2 24488999999999888866556788777543 4443
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.91 E-value=6 Score=39.41 Aligned_cols=164 Identities=14% Similarity=0.211 Sum_probs=94.9
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcC-C--CCcceEEEeCCCCeEEEEEecCCCC
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV-G--NATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~-~--~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
|-.++|+-.+.+-++++ ..+++|+.||...+.. +.+.....++..... | .+...++.++ ++.++|. ++..
T Consensus 119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~--~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivs-Ggte-- 192 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA--TLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVS-GGTE-- 192 (735)
T ss_pred hheeeeecccCceeEEecCCCccEEEEEccCcch--hhhhhccccccccCCCCCccceeeeecCC-cceEEEe-cCcc--
Confidence 66788885555556666 7789999999654420 000000001111111 1 2346777774 6777774 4443
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
.-|..||+.+++.+.... +. -.....+.+++||+-.++.+..+.|..+|..-+. .+. .+.. ...
T Consensus 193 --k~lr~wDprt~~kimkLr--GH---TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr-Cl~---T~~v-----H~e 256 (735)
T KOG0308|consen 193 --KDLRLWDPRTCKKIMKLR--GH---TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR-CLA---TYIV-----HKE 256 (735)
T ss_pred --cceEEeccccccceeeee--cc---ccceEEEEEcCCCCeEeecCCCceEEeeeccccc-eee---eEEe-----ccC
Confidence 348899999887653222 11 2456679999999988888889999999986332 110 1111 011
Q ss_pred ccCeEEEccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 206 GLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
+.-.+..+++= .+|..+ ..+.|+|-|+...
T Consensus 257 ~VWaL~~~~sf~~vYsG~-rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGG-RDGNIYRTDLRNP 287 (735)
T ss_pred ceEEEeeCCCcceEEecC-CCCcEEecccCCc
Confidence 23445555554 555444 4566888887774
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=91.82 E-value=9.1 Score=34.15 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=80.7
Q ss_pred CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC--------CCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 60 GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV--------GNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 60 g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~--------~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
|.+||--..+..|.++|..... +..+ +.+...+.. +..-..+++| .+-|||.-+-..+...-.|.
T Consensus 84 gslYY~~~~s~~iiKydL~t~~----v~~~-~~Lp~a~y~~~~~Y~~~~~sdiDlAvD--E~GLWvIYat~~~~g~ivvS 156 (255)
T smart00284 84 GSLYFNKFNSHDICRFDLTTET----YQKE-PLLNGAGYNNRFPYAWGGFSDIDLAVD--ENGLWVIYATEQNAGKIVIS 156 (255)
T ss_pred ceEEEEecCCccEEEEECCCCc----EEEE-EecCccccccccccccCCCccEEEEEc--CCceEEEEeccCCCCCEEEE
Confidence 5666654567899999965443 2221 222111111 1123567777 45589875422221112456
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC---CCe-EEEEccCCcEEEEecCCcccccccccccccc
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV---SSK-IWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~---~~~-I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
++|+.+-+++...+..-+. ...-|...+. |.||++++. ..+ -+.+|..+.......- .|.. .....
T Consensus 157 kLnp~tL~ve~tW~T~~~k--~sa~naFmvC--GvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i-~f~n-----~y~~~ 226 (255)
T smart00284 157 KLNPATLTIENTWITTYNK--RSASNAFMIC--GILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI-PFEN-----MYEYI 226 (255)
T ss_pred eeCcccceEEEEEEcCCCc--ccccccEEEe--eEEEEEccCCCCCcEEEEEEECCCCccceeee-eecc-----ccccc
Confidence 8999888777555443221 1222333332 899999862 233 4567776543321110 1211 12335
Q ss_pred CeEEEccC-CeEEEEECCCCEEEEEeC
Q 039428 208 NGIVYHPD-GFLIVIHMCSGNLFKIDI 233 (335)
Q Consensus 208 ~Gia~~~d-g~Lyvad~~~~~v~~~d~ 233 (335)
..|.+.|. ..||+-| ++.+..+++
T Consensus 227 s~l~YNP~d~~LY~wd--ng~~l~Y~v 251 (255)
T smart00284 227 SMLDYNPNDRKLYAWN--NGHLVHYDI 251 (255)
T ss_pred eeceeCCCCCeEEEEe--CCeEEEEEE
Confidence 67889994 4899876 444555543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.81 E-value=18 Score=37.67 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=68.5
Q ss_pred CCCceeECCCCcEEEEeCCCC--eEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEe
Q 039428 155 TADDIAVDAEGNAYVTDVVSS--KIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKID 232 (335)
Q Consensus 155 ~p~~~~vd~~G~lyV~d~~~~--~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d 232 (335)
..|=++|.|---++|+.+... .+||.+.. +. |+.... .+...+..++-++|...|+++++.++.|.+.|
T Consensus 208 GVNwaAfhpTlpliVSG~DDRqVKlWrmnet-Ka---WEvDtc-----rgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 208 GVNWAAFHPTLPLIVSGADDRQVKLWRMNET-KA---WEVDTC-----RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred ccceEEecCCcceEEecCCcceeeEEEeccc-cc---eeehhh-----hcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 344456665555666655433 34444332 11 111111 12345688999999999999999999999999
Q ss_pred CCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 233 IRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 233 ~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
.+..+ .++.+....++ -+=+|..|..+||.|+-. +++.|+..
T Consensus 279 m~kRt-~v~tfrrendR----FW~laahP~lNLfAAgHD-sGm~VFkl 320 (1202)
T KOG0292|consen 279 MTKRT-SVQTFRRENDR----FWILAAHPELNLFAAGHD-SGMIVFKL 320 (1202)
T ss_pred ccccc-ceeeeeccCCe----EEEEEecCCcceeeeecC-CceEEEEE
Confidence 99875 56666543322 456777788888888542 33455544
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=91.75 E-value=14 Score=36.24 Aligned_cols=203 Identities=15% Similarity=0.101 Sum_probs=95.4
Q ss_pred eEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEec-------CC-CC
Q 039428 54 AKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD-------VL-GN 125 (335)
Q Consensus 54 ia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D-------~~-~~ 125 (335)
+-.-++|++++... ..+.++|. .|+ ++.+ ...++..-..-+.+...+ +|++++.... .. .-
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~-~G~----v~~~---~~l~~~~~~~HHD~~~l~-nGn~L~l~~~~~~~~~~~~~~~ 221 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDL-LGK----VIWE---YDLPGGYYDFHHDIDELP-NGNLLILASETKYVDEDKDVDT 221 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-T-T------EEEE---EE--TTEE-B-S-EEE-T-TS-EEEEEEETTEE-TS-EE--
T ss_pred eeEcCCCCEEEecC--CceEEEcC-CCC----EEEe---eecCCcccccccccEECC-CCCEEEEEeecccccCCCCccE
Confidence 44566676665543 67888874 465 2222 122321001136788886 6776665441 11 00
Q ss_pred ccceEEEEECCCCeEEEEeecCCCc---c-------------------CCCCCCceeECC-CCcEEEEeCCCCeEEEEc-
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKS---E-------------------EKSTADDIAVDA-EGNAYVTDVVSSKIWKVG- 181 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~---~-------------------~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d- 181 (335)
....|+.+| .+|++++..++...- . .-...|.+..|+ ++.++++......|+++|
T Consensus 222 ~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~ 300 (477)
T PF05935_consen 222 VEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDY 300 (477)
T ss_dssp -S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-
T ss_pred ecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEEC
Confidence 014699999 788887665432110 0 014567899998 678999988889999999
Q ss_pred cCCcEEEEecCCccc---------cc------------cccccccccCeEEEccCC---eEEEEECCC------------
Q 039428 182 VEGQLLSIIRSPLFT---------AK------------EWYKNVFGLNGIVYHPDG---FLIVIHMCS------------ 225 (335)
Q Consensus 182 ~~g~~~~~~~~~~~~---------~~------------~~~~~~~~p~Gia~~~dg---~Lyvad~~~------------ 225 (335)
..++....++.+..- .| +.-....+.+...+.++| .|++=|-+.
T Consensus 301 ~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFDNg~~r~~~~~~~~~~ 380 (477)
T PF05935_consen 301 RTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFDNGNGRGYGQPAYVSP 380 (477)
T ss_dssp TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE--TTGGGS--SSCCG
T ss_pred CCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEECCCCCCCCCcccccc
Confidence 456665566543111 11 111122356788888888 887766432
Q ss_pred ----CEE--EEEeCCCCceeEE-EEeccCC--cCC--CCCCeEEEcCC-CcEEEEec
Q 039428 226 ----GNL--FKIDIRKEEEEVK-LIELRGG--SSL--SLGDGLALLSP-TKLVVAGN 270 (335)
Q Consensus 226 ----~~v--~~~d~~~~~~~~~-~~~~~g~--~~~--~~pdGia~d~~-g~l~va~~ 270 (335)
.|+ |++|.+.. +++ ++..... ..+ ..--++..-++ |++++...
T Consensus 381 ~~~~Sr~v~Y~Ide~~~--T~~~vw~y~~~~g~~~yS~~~s~aq~l~n~gn~li~~g 435 (477)
T PF05935_consen 381 KDNYSRAVEYRIDENKM--TVEQVWEYGKPRGNEFYSPIVSSAQYLPNKGNTLITSG 435 (477)
T ss_dssp -----EEEEEEEETTTT--EEEEEEEESGGGGGGG--SS--EEEEETTTTEEEEEEE
T ss_pred ccccceEEEEEecCCCc--eEEEEEEeCCCCCCCccCCcceeeEEecCCCCEEEEeC
Confidence 134 55666554 333 3322110 111 23345666677 78777733
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.58 E-value=16 Score=36.50 Aligned_cols=153 Identities=12% Similarity=0.105 Sum_probs=92.8
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEE
Q 039428 55 KWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYD 134 (335)
Q Consensus 55 a~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d 134 (335)
.+-+.-+.++++..+..|.+++-.+++. +. .+-..+. -...|+++| ..-...++.|. ..|..||
T Consensus 62 kfiaRknWiv~GsDD~~IrVfnynt~ek----V~--~FeAH~D----yIR~iavHP-t~P~vLtsSDD-----m~iKlW~ 125 (794)
T KOG0276|consen 62 KFIARKNWIVTGSDDMQIRVFNYNTGEK----VK--TFEAHSD----YIRSIAVHP-TLPYVLTSSDD-----MTIKLWD 125 (794)
T ss_pred eeeeccceEEEecCCceEEEEeccccee----eE--Eeecccc----ceeeeeecC-CCCeEEecCCc-----cEEEEee
Confidence 4444445555557788888887544441 22 1332333 346899998 44343433332 3577788
Q ss_pred CCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEc
Q 039428 135 LSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYH 213 (335)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~ 213 (335)
.+.+..- ...+++ . .++...+++.|+. +-|++.+...+|-++...... +.|+-. +...+.|.+.+-
T Consensus 126 we~~wa~-~qtfeG--H-~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~------~nfTl~---gHekGVN~Vdyy 192 (794)
T KOG0276|consen 126 WENEWAC-EQTFEG--H-EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH------PNFTLE---GHEKGVNCVDYY 192 (794)
T ss_pred ccCceee-eeEEcC--c-ceEEEEEEecCCCccceeeeeccccEEEEEcCCCC------Cceeee---ccccCcceEEec
Confidence 8755322 122322 2 4788899999974 799998888888777765332 223321 234579999999
Q ss_pred cCC-e-EEEEECCCCEEEEEeCCCC
Q 039428 214 PDG-F-LIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 214 ~dg-~-Lyvad~~~~~v~~~d~~~~ 236 (335)
+.| . -.++-..++.|.+.|..+.
T Consensus 193 ~~gdkpylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 193 TGGDKPYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred cCCCcceEEecCCCceEEEeecchH
Confidence 877 3 3356666777777787764
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.47 E-value=8.9 Score=35.17 Aligned_cols=197 Identities=10% Similarity=0.095 Sum_probs=106.7
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECC-CCCCCcceeeeeEEeecCCcC-CCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVP-DEYSPGTVLEEVKLVKEDDVV-GNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~-~g~~~~~v~~~~~~~~~~~~~-~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
...++++++||..+|.. .++.|.+||.. .|+. ....+........ .....-++++|.+-..+++ ...+++
T Consensus 160 aAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~----c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~--gsY~q~- 231 (406)
T KOG2919|consen 160 AAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD----CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAV--GSYGQR- 231 (406)
T ss_pred hheeEEecCCCCeEeec-ccceEEEeeccCCCCC----CcchhhhhcccccccceeeeeeccCCCCcceee--ecccce-
Confidence 46799999999988877 47789999742 1331 1100111111110 0234567788755556664 233332
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
+-.|.-..+....... +. .+....+...++|+ +|+.-.....|..+|..-.... .+.-.........
T Consensus 232 --~giy~~~~~~pl~llg----gh-~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p-----v~~L~rhv~~TNQ 299 (406)
T KOG2919|consen 232 --VGIYNDDGRRPLQLLG----GH-GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP-----VYALERHVGDTNQ 299 (406)
T ss_pred --eeeEecCCCCceeeec----cc-CCCeeeEEeccCcCeecccccCCCeEEEEeehhccch-----hhhhhhhccCccc
Confidence 3344444444443221 11 45666788899997 6665556789999987532111 1110000000011
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
--=.-++|+|+.+++-...|.|.+.|+++.+..+.++.... ....|+++.|.=-+..+..
T Consensus 300 RI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s----d~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 300 RILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS----DTVNGVSLNPIMPILATSS 359 (406)
T ss_pred eEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc----ccccceecCcccceeeecc
Confidence 11234567788888887889999999988431233332211 3467888888744444444
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.45 E-value=12 Score=36.95 Aligned_cols=126 Identities=7% Similarity=0.082 Sum_probs=74.6
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
...++++.-..-+|+......|||++...|++ +. ++-.. ....+.+.+++ -+.|++|.... +.|
T Consensus 136 GRDm~y~~~scDly~~gsg~evYRlNLEqGrf----L~--P~~~~----~~~lN~v~in~-~hgLla~Gt~~-----g~V 199 (703)
T KOG2321|consen 136 GRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF----LN--PFETD----SGELNVVSINE-EHGLLACGTED-----GVV 199 (703)
T ss_pred CccccccCCCccEEEeecCcceEEEEcccccc----cc--ccccc----cccceeeeecC-ccceEEecccC-----ceE
Confidence 34566655544444444567899999877774 11 12111 12446777876 55566653322 458
Q ss_pred EEEECCCCeEEEEeecC----C-Cc-cCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecC
Q 039428 131 AAYDLSTWKRLFLTQLS----G-KS-EEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRS 192 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~----~-~~-~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~ 192 (335)
-.||+.........+.. . ++ .....+..+.|+.+|--.-..+.+|.|+.+|...+...+..+
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd 267 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD 267 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc
Confidence 88999876544222211 1 11 124557889999888555556788999999988665444433
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=91.42 E-value=9.3 Score=39.78 Aligned_cols=118 Identities=13% Similarity=0.106 Sum_probs=62.5
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccC---CCCCCceeEC-----------------CCCcEEEEe
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEE---KSTADDIAVD-----------------AEGNAYVTD 171 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~p~~~~vd-----------------~~G~lyV~d 171 (335)
++.||+++.+ +.|+.+|.++|+.++..+...+... .....+++.- .++++|+.
T Consensus 194 gg~lYv~t~~------~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~- 266 (764)
T TIGR03074 194 GDTLYLCTPH------NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILP- 266 (764)
T ss_pred CCEEEEECCC------CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEe-
Confidence 6899996432 3599999999998877665332110 0011222221 23477776
Q ss_pred CCCCeEEEEccC-CcEEEEecCC-c--ccc--ccccccccc-cCeEEEccCCeEEEEEC---------CCCEEEEEeCCC
Q 039428 172 VVSSKIWKVGVE-GQLLSIIRSP-L--FTA--KEWYKNVFG-LNGIVYHPDGFLIVIHM---------CSGNLFKIDIRK 235 (335)
Q Consensus 172 ~~~~~I~~~d~~-g~~~~~~~~~-~--~~~--~~~~~~~~~-p~Gia~~~dg~Lyvad~---------~~~~v~~~d~~~ 235 (335)
+..++++.+|.+ |+....++.. . +.. +........ ...-.+. ++.+|+... .++.|+.+|.++
T Consensus 267 T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~-~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T 345 (764)
T TIGR03074 267 TSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVA-GTTVVIGGRVADNYSTDEPSGVIRAFDVNT 345 (764)
T ss_pred cCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEE-CCEEEEEecccccccccCCCcEEEEEECCC
Confidence 446788888876 5555433221 0 000 000000011 1112222 567777643 257888889888
Q ss_pred Cc
Q 039428 236 EE 237 (335)
Q Consensus 236 ~~ 237 (335)
++
T Consensus 346 Gk 347 (764)
T TIGR03074 346 GA 347 (764)
T ss_pred Cc
Confidence 74
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=91.32 E-value=5.1 Score=37.83 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=54.0
Q ss_pred EECCCCeEE-EEeecCCCccCCCCCCceeECCCCc--EEEEeC-CCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 133 YDLSTWKRL-FLTQLSGKSEEKSTADDIAVDAEGN--AYVTDV-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 133 ~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~~G~--lyV~d~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
.|+.||..+ ...+...... ..+.+.=++.+||+ +|.++. ....+|.+|.++...+.+-.. + ..+.-
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h-~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg----~-----g~~~~ 84 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSH-RLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDG----P-----GDNTF 84 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE----TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---S----S------B-TT
T ss_pred eCCCCCceEEEecCCCCccc-ceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccC----C-----CCCcc
Confidence 477777544 2222211111 35666677788885 555664 356899999998776644221 0 12233
Q ss_pred eEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 209 GIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 209 Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
|..++++. .+|+.. .+.+|+++|+++.+ ...++..+.+ +..-.....++++..++.
T Consensus 85 g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e-~~~vy~~p~~--~~g~gt~v~n~d~t~~~g 141 (386)
T PF14583_consen 85 GGFLSPDDRALYYVK-NGRSLRRVDLDTLE-ERVVYEVPDD--WKGYGTWVANSDCTKLVG 141 (386)
T ss_dssp T-EE-TTSSEEEEEE-TTTEEEEEETTT---EEEEEE--TT--EEEEEEEEE-TTSSEEEE
T ss_pred ceEEecCCCeEEEEE-CCCeEEEEECCcCc-EEEEEECCcc--cccccceeeCCCccEEEE
Confidence 67788877 765433 45789999999974 4344444331 111112223566665544
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=91.11 E-value=15 Score=35.21 Aligned_cols=196 Identities=8% Similarity=-0.083 Sum_probs=92.1
Q ss_pred ceeeeEEc-CCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC--C--CCcceEEEeCCCCeEEEEEecCCC
Q 039428 50 LCETAKWD-DVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV--G--NATMGIAVDRPRNRLLVAFTDVLG 124 (335)
Q Consensus 50 ~pegia~d-~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~--~--~~p~Gi~~d~~~g~l~v~~~D~~~ 124 (335)
.--+|++. .+.+.-++....+.|.+-++. |+. .+. . ..+... . ...++|.+. +++.|++ .+.
T Consensus 89 ~L~~V~F~~~d~~~GwAVG~~G~IL~T~DG-G~t----W~~--~-~~~~~~~~~~~~~l~~v~f~--~~~g~~v-G~~-- 155 (398)
T PLN00033 89 VLLDIAFVPDDPTHGFLLGTRQTLLETKDG-GKT----WVP--R-SIPSAEDEDFNYRFNSISFK--GKEGWII-GKP-- 155 (398)
T ss_pred ceEEEEeccCCCCEEEEEcCCCEEEEEcCC-CCC----ceE--C-ccCcccccccccceeeeEEE--CCEEEEE-cCc--
Confidence 45788883 233344444457788888643 441 111 1 111110 0 124788886 4678885 322
Q ss_pred CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCc----cccc--
Q 039428 125 NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPL----FTAK-- 198 (335)
Q Consensus 125 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~----~~~~-- 198 (335)
..|+ ...+.|+.......... . ...+..+....++..|+.. ..+.|++-+-.|+.-+....+. +...
T Consensus 156 ---G~il-~T~DgG~tW~~~~~~~~-~-p~~~~~i~~~~~~~~~ivg-~~G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~ 228 (398)
T PLN00033 156 ---AILL-HTSDGGETWERIPLSPK-L-PGEPVLIKATGPKSAEMVT-DEGAIYVTSNAGRNWKAAVEETVSATLNRTVS 228 (398)
T ss_pred ---eEEE-EEcCCCCCceECccccC-C-CCCceEEEEECCCceEEEe-ccceEEEECCCCCCceEccccccccccccccc
Confidence 2233 33455543322222110 0 1123445554455566654 5567777765554322110000 0000
Q ss_pred -c---ccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 199 -E---WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 199 -~---~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
+ ..+-...-.++...+||.+++... .+.+++-+-.+.. ..+.+..+.. ....++++.++|.+|++..
T Consensus 229 s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~-~G~~~~s~d~G~~-~W~~~~~~~~---~~l~~v~~~~dg~l~l~g~ 299 (398)
T PLN00033 229 SGISGASYYTGTFSTVNRSPDGDYVAVSS-RGNFYLTWEPGQP-YWQPHNRASA---RRIQNMGWRADGGLWLLTR 299 (398)
T ss_pred ccccccceeccceeeEEEcCCCCEEEEEC-CccEEEecCCCCc-ceEEecCCCc---cceeeeeEcCCCCEEEEeC
Confidence 0 000001134566677875554443 3357766555541 2344444321 2356888889999999865
|
|
| >PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A | Back alignment and domain information |
|---|
Probab=91.11 E-value=1 Score=39.39 Aligned_cols=149 Identities=14% Similarity=0.075 Sum_probs=69.8
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECC-C-CeEEEEeecCCCccC-CCCCCceeECCCCcEEEEeCCCCeEEEE
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLS-T-WKRLFLTQLSGKSEE-KSTADDIAVDAEGNAYVTDVVSSKIWKV 180 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~-~-~~~~~~~~~~~~~~~-~~~p~~~~vd~~G~lyV~d~~~~~I~~~ 180 (335)
.-|+..| +++||+...| .+++..+. . +.... ..-...+.+ -+....|.+|+.|-||..+. .+.++|.
T Consensus 37 ~~i~~~P-~g~lY~I~~~-------~lY~~~~~~~~~~~~~-~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~-~G~lyR~ 106 (229)
T PF14517_consen 37 RDIAAGP-NGRLYAIRND-------GLYRGSPSSSGGNTWD-SGSKQIGDGGWNSFKFIFFDPTGVLYAVTP-DGKLYRH 106 (229)
T ss_dssp SEEEE-T-TS-EEEEETT-------EEEEES---STT--HH-HH-EEEE-S-GGG-SEEEE-TTS-EEEEET-T-EEEEE
T ss_pred ceEEEcC-CceEEEEECC-------ceEEecCCccCccccc-ccCcccccCcccceeEEEecCCccEEEecc-ccceeec
Confidence 4577787 8999997543 37777322 1 11110 000000111 44566899999999998755 6788988
Q ss_pred ccCCcEEEEecCCccc-ccccc--ccccccCeEEEccCCeEEEEECCCCEEEEE-eCCCCc----eeEEEEeccCCcCCC
Q 039428 181 GVEGQLLSIIRSPLFT-AKEWY--KNVFGLNGIVYHPDGFLIVIHMCSGNLFKI-DIRKEE----EEVKLIELRGGSSLS 252 (335)
Q Consensus 181 d~~g~~~~~~~~~~~~-~~~~~--~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~-d~~~~~----~~~~~~~~~g~~~~~ 252 (335)
.+-.....- +.. ..... ..-...+-|-++++|.||.-+. ++++++. ++.+.. .....+...+ ..
T Consensus 107 ~~~~~~~~~----W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~-dg~~~~~~~p~~~~~~W~~~s~~v~~~g---w~ 178 (229)
T PF14517_consen 107 PRPTNGSDN----WIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITP-DGRLYRRYRPDGGSDRWLSGSGLVGGGG---WD 178 (229)
T ss_dssp S---STT------HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEET-TE-EEEE---SSTT--HHHH-EEEESSS---GG
T ss_pred cCCCccCcc----hhhccceecccCCCccceEEEeCCCccEEEEcC-CCceEEeCCCCCCCCccccccceeccCC---cc
Confidence 764211110 100 00000 0112267788899999998884 4578877 444431 1122332222 23
Q ss_pred CCCeEEEcCCCcEEEEec
Q 039428 253 LGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 253 ~pdGia~d~~g~l~va~~ 270 (335)
.+.-|...++|+||....
T Consensus 179 ~~~~i~~~~~g~L~~V~~ 196 (229)
T PF14517_consen 179 SFHFIFFSPDGNLWAVKS 196 (229)
T ss_dssp GEEEEEE-TTS-EEEE-E
T ss_pred cceEEeeCCCCcEEEEec
Confidence 466788889999998843
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.03 E-value=19 Score=36.39 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=40.1
Q ss_pred ccCeEEEccCC-eEEEEECCCCEEEE---EeCCCCceeEEE---EeccCCcCCCC-CCeEEEcCCCcEEEEecCC-CeEE
Q 039428 206 GLNGIVYHPDG-FLIVIHMCSGNLFK---IDIRKEEEEVKL---IELRGGSSLSL-GDGLALLSPTKLVVAGNPY-PSAR 276 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~~~~v~~---~d~~~~~~~~~~---~~~~g~~~~~~-pdGia~d~~g~l~va~~~~-~~~~ 276 (335)
.+..+.++||| ++.+.- .++|+. +...++ ..+. ..+.. . +.. +..+++-.++.|+|...+. ..++
T Consensus 449 ~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G--~~~l~~~~~l~~-~-l~~~~~~l~W~~~~~L~V~~~~~~~~v~ 522 (591)
T PRK13616 449 PISELQLSRDGVRAAMII--GGKVYLAVVEQTEDG--QYALTNPREVGP-G-LGDTAVSLDWRTGDSLVVGRSDPEHPVW 522 (591)
T ss_pred CcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCC--ceeecccEEeec-c-cCCccccceEecCCEEEEEecCCCCceE
Confidence 48899999999 665544 367877 554444 3222 11111 1 222 4678888889888874322 2355
Q ss_pred EEEc
Q 039428 277 LVES 280 (335)
Q Consensus 277 v~~~ 280 (335)
.+..
T Consensus 523 ~v~v 526 (591)
T PRK13616 523 YVNL 526 (591)
T ss_pred EEec
Confidence 4544
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.03 E-value=24 Score=37.58 Aligned_cols=199 Identities=15% Similarity=0.142 Sum_probs=112.2
Q ss_pred CEEEEEecCCeEEEEECCCCC-CCcceeeeeEEeecCCc-CCCCcceEEEe--CCCCeEEEEEecCCCCccceEEEEECC
Q 039428 61 RRFLVSFLDGGVGQVLVPDEY-SPGTVLEEVKLVKEDDV-VGNATMGIAVD--RPRNRLLVAFTDVLGNKYSALAAYDLS 136 (335)
Q Consensus 61 ~~~~~~~~~~~I~~~d~~~g~-~~~~v~~~~~~~~~~~~-~~~~p~Gi~~d--~~~g~l~v~~~D~~~~~~~~v~~~d~~ 136 (335)
.++.+...+|.|..|++-... .+.+++.. |....++ .+..-.|+.+| -..|.|+++ +|. ..|.+||.+
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTa--w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t-Gd~-----r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTA--WSSLSDQLPGARGTGLVVDWQQQSGHLLVT-GDV-----RSIRIWDAH 1195 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEe--eccccccCccCCCCCeeeehhhhCCeEEec-CCe-----eEEEEEecc
Confidence 455555667888888632111 11122221 2111111 11234566666 235788885 444 368899988
Q ss_pred CCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccCCcE----EEEecCCccccccccccccccCeEE
Q 039428 137 TWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVEGQL----LSIIRSPLFTAKEWYKNVFGLNGIV 211 (335)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~g~~----~~~~~~~~~~~~~~~~~~~~p~Gia 211 (335)
..++...++... ...+..+..|-. |++.++....|+|..+|..-.. +...+ .+... ....++.
T Consensus 1196 ~E~~~~diP~~s----~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R--~h~~~------~~Iv~~s 1263 (1387)
T KOG1517|consen 1196 KEQVVADIPYGS----STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR--EHNDV------EPIVHLS 1263 (1387)
T ss_pred cceeEeecccCC----CccceeecccccCCceEEEeecCCceEEeecccCCccccceeec--ccCCc------ccceeEE
Confidence 766664444421 345566666653 7999999999999999865221 11111 11111 1267888
Q ss_pred EccCCe-EEEEECCCCEEEEEeCCCC-ceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 212 YHPDGF-LIVIHMCSGNLFKIDIRKE-EEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 212 ~~~dg~-Lyvad~~~~~v~~~d~~~~-~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
+-+.|. =.|+-+.+|.|..+|+... +.....+...-+. -..-..|.+..+-.++.+++. ..+.|+...
T Consensus 1264 lq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y-Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1264 LQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY-GSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred eecCCCcceeeeccCCeEEEEecccCcccccceeeecccc-CccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 888773 3778889999999999984 1111111111100 001456788877788877664 567776654
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=91.00 E-value=11 Score=33.58 Aligned_cols=149 Identities=20% Similarity=0.192 Sum_probs=84.6
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCcc--------CCCCCCceeECCCCc--EEEEeCC
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSE--------EKSTADDIAVDAEGN--AYVTDVV 173 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--------~~~~p~~~~vd~~G~--lyV~d~~ 173 (335)
.|-.+- +|.||--...+ ..|.+||+.++.+.....++..+. ....--|+++|..|- ||.+...
T Consensus 72 tG~vVY--ngslYY~~~~s-----~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~ 144 (250)
T PF02191_consen 72 TGHVVY--NGSLYYNKYNS-----RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN 144 (250)
T ss_pred CCeEEE--CCcEEEEecCC-----ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC
Confidence 466665 57777732212 469999999987764444533221 012224789998883 4444444
Q ss_pred CC--eEEEEccCC-cEEEEecCCccccccccccccccCeEEEccCCeEEEEECCC---CEE-EEEeCCCCceeEEEEecc
Q 039428 174 SS--KIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCS---GNL-FKIDIRKEEEEVKLIELR 246 (335)
Q Consensus 174 ~~--~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~---~~v-~~~d~~~~~~~~~~~~~~ 246 (335)
.+ .|-++|++. ...+.+... +.. .--|=||---|.||+.++.+ .+| +.||+..++.....+...
T Consensus 145 ~g~ivvskld~~tL~v~~tw~T~-~~k--------~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~ 215 (250)
T PF02191_consen 145 NGNIVVSKLDPETLSVEQTWNTS-YPK--------RSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFP 215 (250)
T ss_pred CCcEEEEeeCcccCceEEEEEec-cCc--------hhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeec
Confidence 44 455788764 333334322 211 12233666679999998875 444 888998763221223322
Q ss_pred CCcCCCCCCeEEEcCCC-cEEEEec
Q 039428 247 GGSSLSLGDGLALLSPT-KLVVAGN 270 (335)
Q Consensus 247 g~~~~~~pdGia~d~~g-~l~va~~ 270 (335)
. ......-+..+|.. .||+=++
T Consensus 216 ~--~~~~~~~l~YNP~dk~LY~wd~ 238 (250)
T PF02191_consen 216 N--PYGNISMLSYNPRDKKLYAWDN 238 (250)
T ss_pred c--ccCceEeeeECCCCCeEEEEEC
Confidence 1 13345667777764 6887777
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.93 E-value=19 Score=36.25 Aligned_cols=186 Identities=15% Similarity=0.038 Sum_probs=108.3
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
..-.++....++. ++.+.++.++.+|. . ++. .. . .++.. .....++.-+ .+ .|++.+ .++
T Consensus 102 snVC~ls~~~~~~-~iSgSWD~TakvW~-~-~~l----~~---~--l~gH~-asVWAv~~l~-e~-~~vTgs---aDK-- 161 (745)
T KOG0301|consen 102 SNVCSLSIGEDGT-LISGSWDSTAKVWR-I-GEL----VY---S--LQGHT-ASVWAVASLP-EN-TYVTGS---ADK-- 161 (745)
T ss_pred cceeeeecCCcCc-eEecccccceEEec-c-hhh----hc---c--cCCcc-hheeeeeecC-CC-cEEecc---Ccc--
Confidence 3456777777766 45558888877774 2 331 11 1 11111 1345666555 34 666421 222
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEE-ecCCcccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSI-IRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~p 207 (335)
.|..|.- ++.... +.+. .....++++-+++ -|++-+..|.|..++.+|+.+.. .+.. ...
T Consensus 162 tIklWk~--~~~l~t--f~gH---tD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ght-----------n~v 222 (745)
T KOG0301|consen 162 TIKLWKG--GTLLKT--FSGH---TDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHT-----------NFV 222 (745)
T ss_pred eeeeccC--Cchhhh--hccc---hhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccc-----------eEE
Confidence 3666653 333311 2111 3456678887775 35566788899999998876542 2221 224
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
..|....++.++|+-..++++...+.+ . ..+.+.+++. .-+.+.+-.+|.++|++.. +.++|+...
T Consensus 223 Ysis~~~~~~~Ivs~gEDrtlriW~~~-e--~~q~I~lPtt----siWsa~~L~NgDIvvg~SD-G~VrVfT~~ 288 (745)
T KOG0301|consen 223 YSISMALSDGLIVSTGEDRTLRIWKKD-E--CVQVITLPTT----SIWSAKVLLNGDIVVGGSD-GRVRVFTVD 288 (745)
T ss_pred EEEEecCCCCeEEEecCCceEEEeecC-c--eEEEEecCcc----ceEEEEEeeCCCEEEeccC-ceEEEEEec
Confidence 456655566788887777765544433 3 7788887662 2567777788999999662 667776654
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.92 E-value=13 Score=35.61 Aligned_cols=155 Identities=15% Similarity=0.042 Sum_probs=84.5
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-.+|.....++..-+...+.++..|..++.. +++-.+. +..+..+++-. +.++.. .+|. +.|
T Consensus 289 v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---------qlifrg~--~~sidcv~~In-~~Hfvs-GSdn-----G~I 350 (479)
T KOG0299|consen 289 VLGIDALSRERCVTVGGRDRTVRLWKIPEES---------QLIFRGG--EGSIDCVAFIN-DEHFVS-GSDN-----GSI 350 (479)
T ss_pred eeeechhcccceEEeccccceeEEEeccccc---------eeeeeCC--CCCeeeEEEec-ccceee-ccCC-----ceE
Confidence 4556555556665555455555444433222 1221121 13566777763 444443 2332 458
Q ss_pred EEEECCCCeEEEEeecCCCcc----CC---CCCCceeECCCCcEEEEeCCCCeEEE--EccCCcEEEEecCCcccccccc
Q 039428 131 AAYDLSTWKRLFLTQLSGKSE----EK---STADDIAVDAEGNAYVTDVVSSKIWK--VGVEGQLLSIIRSPLFTAKEWY 201 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~----~~---~~p~~~~vd~~G~lyV~d~~~~~I~~--~d~~g~~~~~~~~~~~~~~~~~ 201 (335)
..|+....+.++.......-. +. ..-+.+++-+.-+++.+.+.+|.|.. +..+-+....+.+-.
T Consensus 351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls------- 423 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS------- 423 (479)
T ss_pred EEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-------
Confidence 899988887776554321111 11 24567888887788888887775554 443323333222111
Q ss_pred ccccccCeEEEccCC-eEEEEECCCCEEEEE
Q 039428 202 KNVFGLNGIVYHPDG-FLIVIHMCSGNLFKI 231 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~ 231 (335)
-....|+|+|+++| +++++-..-+++-|.
T Consensus 424 -~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 424 -LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred -cccEEEEEEEccCCCEEEEeccccccccee
Confidence 11248999999999 587775554444333
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.85 E-value=13 Score=34.04 Aligned_cols=176 Identities=11% Similarity=0.138 Sum_probs=99.7
Q ss_pred CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCC-eEEEEeecCC
Q 039428 70 GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW-KRLFLTQLSG 148 (335)
Q Consensus 70 ~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~-~~~~~~~~~~ 148 (335)
+.|..||+. .+. . +.+..+ . ....++.++ +++|.|+.. +.|++|..... +.....+.
T Consensus 75 NkviIWDD~-k~~--~-i~el~f---~----~~I~~V~l~--r~riVvvl~-------~~I~VytF~~n~k~l~~~et-- 132 (346)
T KOG2111|consen 75 NKVIIWDDL-KER--C-IIELSF---N----SEIKAVKLR--RDRIVVVLE-------NKIYVYTFPDNPKLLHVIET-- 132 (346)
T ss_pred ceEEEEecc-cCc--E-EEEEEe---c----cceeeEEEc--CCeEEEEec-------CeEEEEEcCCChhheeeeec--
Confidence 689999853 332 1 222111 1 134688886 578887654 45888876533 23322222
Q ss_pred CccCCCCCCceeE-CCC-CcEEEEe--CCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECC
Q 039428 149 KSEEKSTADDIAV-DAE-GNAYVTD--VVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC 224 (335)
Q Consensus 149 ~~~~~~~p~~~~v-d~~-G~lyV~d--~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~ 224 (335)
...|+|+.. ++. ..-+++- ...|.|...|....... .+.+- .........++++.+|.+..+.+.
T Consensus 133 ----~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~---~p~~I----~AH~s~Iacv~Ln~~Gt~vATaSt 201 (346)
T KOG2111|consen 133 ----RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN---APSII----NAHDSDIACVALNLQGTLVATAST 201 (346)
T ss_pred ----ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC---CceEE----EcccCceeEEEEcCCccEEEEecc
Confidence 356777664 332 3444432 34688888886532220 00000 011223678899999999999999
Q ss_pred CCEEEEE-eCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 225 SGNLFKI-DIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 225 ~~~v~~~-d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.|.+.|| |...+. .++.+.. | ..-+.-.-|++.++..+..+....+.+-++...
T Consensus 202 kGTLIRIFdt~~g~-~l~E~RR-G-~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 202 KGTLIRIFDTEDGT-LLQELRR-G-VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred CcEEEEEEEcCCCc-Eeeeeec-C-CchheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence 9987765 665553 5555543 3 112456789999987655554434566665543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.61 E-value=8.2 Score=35.53 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=89.1
Q ss_pred CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeC--CCCeEEEEEecCCCCccceEEEEECCCC
Q 039428 61 RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDR--PRNRLLVAFTDVLGNKYSALAAYDLSTW 138 (335)
Q Consensus 61 ~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~--~~g~l~v~~~D~~~~~~~~v~~~d~~~~ 138 (335)
+++.++..++.|..+|..++++ +++ + +.+. ...+|++|-. .-..++.+..| +.|..||.++.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~----l~~--f-k~~~---~~~N~vrf~~~ds~h~v~s~ssD------G~Vr~wD~Rs~ 104 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL----LEE--F-KGPP---ATTNGVRFISCDSPHGVISCSSD------GTVRLWDIRSQ 104 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh----hhe--e-cCCC---CcccceEEecCCCCCeeEEeccC------CeEEEEEeecc
Confidence 5677778899999999765552 442 2 2221 1346888753 23567776555 35999999876
Q ss_pred eEEEEeecCCCccCCCCCCceeECC--CCcEEEEeCC----CCeEEEEccCCcEEEEecCCccccccccccccccCeEEE
Q 039428 139 KRLFLTQLSGKSEEKSTADDIAVDA--EGNAYVTDVV----SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVY 212 (335)
Q Consensus 139 ~~~~~~~~~~~~~~~~~p~~~~vd~--~G~lyV~d~~----~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~ 212 (335)
.......... . ..--.+.+|. ++++..+.+. ...|+-+|....... ++ .++.. ..--..-+.|
T Consensus 105 ~e~a~~~~~~--~--~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~-~~~eS-----H~DDVT~lrF 173 (376)
T KOG1188|consen 105 AESARISWTQ--Q--SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL-LR-QLNES-----HNDDVTQLRF 173 (376)
T ss_pred hhhhheeccC--C--CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch-hh-hhhhh-----ccCcceeEEe
Confidence 5443333321 1 1112355555 5778887653 346666765432210 10 01110 0112677899
Q ss_pred ccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 213 HPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 213 ~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
.|.. +|.++-+..|-|-.||++..
T Consensus 174 HP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 174 HPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cCCCCCeEEeecccceEEeeecCCC
Confidence 9977 99999999999999999875
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=90.60 E-value=14 Score=34.22 Aligned_cols=197 Identities=14% Similarity=0.140 Sum_probs=92.8
Q ss_pred ceEEEeCCCCeEEEEEecCCCC--ccceEEEEECCCCeEEEEeecCCCccCCCCCCcee-ECCCCcEEEEeCC-----CC
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGN--KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIA-VDAEGNAYVTDVV-----SS 175 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~-vd~~G~lyV~d~~-----~~ 175 (335)
+++++. ++.|||........ ..+.+++||+.+.+-......... . .....+.+ +.-++.+|+-... ..
T Consensus 26 h~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-p-~~~~~~~~~~~~~~~iyv~GG~~~~~~~~ 101 (341)
T PLN02153 26 HGIAVV--GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDV-P-RISCLGVRMVAVGTKLYIFGGRDEKREFS 101 (341)
T ss_pred ceEEEE--CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCC-C-CCccCceEEEEECCEEEEECCCCCCCccC
Confidence 455555 57899963221111 114699999988754322111100 0 11111222 2224679987432 24
Q ss_pred eEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCC-----------CEEEEEeCCCCceeEEEEe
Q 039428 176 KIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCS-----------GNLFKIDIRKEEEEVKLIE 244 (335)
Q Consensus 176 ~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~-----------~~v~~~d~~~~~~~~~~~~ 244 (335)
.++++|+....-..+.. .... ..+....-...++. ++.|||.-..+ +.|+++|+... ....+.
T Consensus 102 ~v~~yd~~t~~W~~~~~--~~~~-~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~l~ 175 (341)
T PLN02153 102 DFYSYDTVKNEWTFLTK--LDEE-GGPEARTFHSMASD-ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG--KWVQLP 175 (341)
T ss_pred cEEEEECCCCEEEEecc--CCCC-CCCCCceeeEEEEE-CCEEEEECCccCCCccCCCcccceEEEEECCCC--eEeeCC
Confidence 78899987543322211 1000 00111122344443 67888763321 35888998876 444443
Q ss_pred ccCCc-CCCCCCeEEEcCCCcEEEEecC-------------CCeEEEEEcCCC-cEEEEEeeeecCCCCCcceEEEEeCC
Q 039428 245 LRGGS-SLSLGDGLALLSPTKLVVAGNP-------------YPSARLVESSDG-WETASVVAKFNGPTHRVATAATVKDG 309 (335)
Q Consensus 245 ~~g~~-~~~~pdGia~d~~g~l~va~~~-------------~~~~~v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~~~g 309 (335)
..+.. ....-.++++ -++++||.... .+.+.+++.... |...+..+.. |..+.-.++++-++
T Consensus 176 ~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~--P~~r~~~~~~~~~~ 252 (341)
T PLN02153 176 DPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAK--PSARSVFAHAVVGK 252 (341)
T ss_pred CCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCC--CCCcceeeeEEECC
Confidence 22100 0001123444 35788886321 245666765544 7654332222 32222234444578
Q ss_pred eEEE
Q 039428 310 RVYL 313 (335)
Q Consensus 310 ~lyV 313 (335)
+|||
T Consensus 253 ~iyv 256 (341)
T PLN02153 253 YIII 256 (341)
T ss_pred EEEE
Confidence 8998
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.56 E-value=1.3 Score=43.44 Aligned_cols=149 Identities=12% Similarity=0.157 Sum_probs=86.4
Q ss_pred eeeeEEcCCCCEEEEEecC---CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 51 CETAKWDDVGRRFLVSFLD---GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~---~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
-..+.|+.+|..+.+.+.+ .+|+..+.. ++. .+.++- ..++.+..+.|+|..-.++|++.
T Consensus 524 i~~vtWHrkGDYlatV~~~~~~~~VliHQLS-K~~-----sQ~PF~----kskG~vq~v~FHPs~p~lfVaTq------- 586 (733)
T KOG0650|consen 524 IRQVTWHRKGDYLATVMPDSGNKSVLIHQLS-KRK-----SQSPFR----KSKGLVQRVKFHPSKPYLFVATQ------- 586 (733)
T ss_pred cceeeeecCCceEEEeccCCCcceEEEEecc-ccc-----ccCchh----hcCCceeEEEecCCCceEEEEec-------
Confidence 3678999999866665432 455555432 221 100121 12246789999998889999754
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc--EEEEecCCcccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ--LLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~--~~~~~~~~~~~~~~~~~~~~ 205 (335)
..|..||+...+++.. +. .+......+++++.|.=.|..+...++..+|.+-. ..+.+. +.. .
T Consensus 587 ~~vRiYdL~kqelvKk--L~---tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr---~H~-------~ 651 (733)
T KOG0650|consen 587 RSVRIYDLSKQELVKK--LL---TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR---LHE-------K 651 (733)
T ss_pred cceEEEehhHHHHHHH--Hh---cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh---hhh-------h
Confidence 3499999876544311 10 11345567999999853444577788999998732 221111 111 1
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEE
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKI 231 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~ 231 (335)
....+++.+.=-|+.+-+..+.+++|
T Consensus 652 avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 652 AVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred hhhhhhhccccceeeeecCCCcEEEE
Confidence 24456666555666666666665555
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.51 E-value=12 Score=35.31 Aligned_cols=125 Identities=10% Similarity=0.173 Sum_probs=80.4
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEE-ecCCcccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSI-IRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~p 207 (335)
.|.-||..+......+++ .+....+....+|+=..+.+..+.+-.+|..+..++. +....|. ....-
T Consensus 323 kvRfwD~Rs~~~~~sv~~------gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k------~asDw 390 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPL------GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK------CASDW 390 (459)
T ss_pred ceEEEeccCCceeeEeec------CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc------ccccc
Confidence 477788766655544443 2355667788888755555778889999988776553 2111121 11236
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
+-++|+|++.+..+-+.+++|+..+..+++ ....+..++.. +...-+++++.|.-.++
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgK-lE~~l~~s~s~--~aI~s~~W~~sG~~Lls 448 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGK-LEKVLSLSTSN--AAITSLSWNPSGSGLLS 448 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCce-EEEEeccCCCC--cceEEEEEcCCCchhhc
Confidence 788999999888888889999999999984 33334433311 23456777777753333
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=90.39 E-value=3 Score=38.49 Aligned_cols=180 Identities=14% Similarity=0.147 Sum_probs=101.9
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCC
Q 039428 59 VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW 138 (335)
Q Consensus 59 ~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~ 138 (335)
+.++++.+..+.+|.+||..+++. +. .++-.- ....++.++ +|.+.-++.| ..+.+||+.+-
T Consensus 246 d~rviisGSSDsTvrvWDv~tge~----l~--tlihHc----eaVLhlrf~--ng~mvtcSkD------rsiaVWdm~sp 307 (499)
T KOG0281|consen 246 DERVIVSGSSDSTVRVWDVNTGEP----LN--TLIHHC----EAVLHLRFS--NGYMVTCSKD------RSIAVWDMASP 307 (499)
T ss_pred cceEEEecCCCceEEEEeccCCch----hh--HHhhhc----ceeEEEEEe--CCEEEEecCC------ceeEEEeccCc
Confidence 334444447788999999766652 22 122111 245788886 5665554433 24777887643
Q ss_pred eEE-EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccCeEEEcc-C
Q 039428 139 KRL-FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNGIVYHP-D 215 (335)
Q Consensus 139 ~~~-~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~-d 215 (335)
.-+ ...-+. +. ....|-+.+|.+ +.|+-+...+|.+++... ++++.+ . ..-.|||--. .
T Consensus 308 s~it~rrVLv--GH-rAaVNvVdfd~k--yIVsASgDRTikvW~~st~efvRtl-----~--------gHkRGIAClQYr 369 (499)
T KOG0281|consen 308 TDITLRRVLV--GH-RAAVNVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTL-----N--------GHKRGIACLQYR 369 (499)
T ss_pred hHHHHHHHHh--hh-hhheeeeccccc--eEEEecCCceEEEEeccceeeehhh-----h--------cccccceehhcc
Confidence 211 000010 11 234455656544 777778888888888763 444422 1 1256888776 5
Q ss_pred CeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 216 GFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 216 g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
|++.|+.+..+.|..+|+..++ -++.+. | . -....-+.+|. .=.|++...+.++|.+..
T Consensus 370 ~rlvVSGSSDntIRlwdi~~G~-cLRvLe--G-H-EeLvRciRFd~--krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 370 DRLVVSGSSDNTIRLWDIECGA-CLRVLE--G-H-EELVRCIRFDN--KRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred CeEEEecCCCceEEEEeccccH-HHHHHh--c-h-HHhhhheeecC--ceeeeccccceEEEEecc
Confidence 6999999999999999998873 333332 2 1 01234566653 334554444666666654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.35 E-value=14 Score=33.61 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=87.4
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-..+.+++..+.+.++.|++++..+|.+... +. ..+. .+ ......++.+ ...+|+...| +.
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~-----l~-~~~~--~~---~plL~c~F~d-~~~~~~G~~d------g~ 76 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANS-----LK-LKFK--HG---APLLDCAFAD-ESTIVTGGLD------GQ 76 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchh-----hh-hhee--cC---CceeeeeccC-CceEEEeccC------ce
Confidence 45678899998888899899998888753222 11 0111 11 1234566653 6778884433 46
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
|.++|+.++.......- ......|...+.-+..|+.+-..+|-.+|+..+... ..+..+ ....
T Consensus 77 vr~~Dln~~~~~~igth------~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~----~~~d~~------kkVy- 139 (323)
T KOG1036|consen 77 VRRYDLNTGNEDQIGTH------DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV----GTFDQG------KKVY- 139 (323)
T ss_pred EEEEEecCCcceeeccC------CCceEEEEeeccCCeEEEcccCccEEEEeccccccc----cccccC------ceEE-
Confidence 99999998765422111 112223444454457777777889999998864322 112211 1122
Q ss_pred EEEccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 210 IVYHPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 210 ia~~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
+.+-.| .|.| -+.+.+|..+|+..-
T Consensus 140 -~~~v~g~~LvV-g~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 140 -CMDVSGNRLVV-GTSDRKVLIYDLRNL 165 (323)
T ss_pred -EEeccCCEEEE-eecCceEEEEEcccc
Confidence 333344 5555 346777888888764
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.34 E-value=1.7 Score=40.66 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=73.4
Q ss_pred eEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC--------CcEEEEecCCccccccccccccccCeE
Q 039428 139 KRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE--------GQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 139 ~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~--------g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
.+.+...+... ....|.+.++++|++..+....+.|..+-.. + ........|....-......-+.-+
T Consensus 54 ~V~y~s~Ls~H---~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~-e~~~~ke~w~v~k~lr~h~~diydL 129 (434)
T KOG1009|consen 54 KVEYLSSLSRH---TRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT-EADLNKEKWVVKKVLRGHRDDIYDL 129 (434)
T ss_pred eEEEeecccCC---cceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc-hhhhCccceEEEEEecccccchhhh
Confidence 34444455322 3567889999999999887777777665443 2 0000000011000001112237789
Q ss_pred EEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 211 VYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 211 a~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
++++|++..++.+..+.++.+|...+ .+..+ .+++ -.++.|++.|+-+..+.+
T Consensus 130 ~Ws~d~~~l~s~s~dns~~l~Dv~~G--~l~~~--~~dh-~~yvqgvawDpl~qyv~s 182 (434)
T KOG1009|consen 130 AWSPDSNFLVSGSVDNSVRLWDVHAG--QLLAI--LDDH-EHYVQGVAWDPLNQYVAS 182 (434)
T ss_pred hccCCCceeeeeeccceEEEEEeccc--eeEee--cccc-ccccceeecchhhhhhhh
Confidence 99999988888889999999999987 33222 2223 367999999998665444
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=90.03 E-value=10 Score=39.44 Aligned_cols=159 Identities=21% Similarity=0.162 Sum_probs=87.8
Q ss_pred CCcceeeeEEcCCC-CEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeC-----CCCeEEEEE
Q 039428 47 PSFLCETAKWDDVG-RRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDR-----PRNRLLVAF 119 (335)
Q Consensus 47 ~~~~pegia~d~~g-~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~-----~~g~l~v~~ 119 (335)
..+.|..+..+.+. ++++.+ ...+.||++|...|+ |+++ |-..... ....++-+. .....|++.
T Consensus 479 ~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GK----VV~e--W~~~~~~---~v~~~~p~~K~aqlt~e~tflGl 549 (794)
T PF08553_consen 479 KNFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGK----VVEE--WKVHDDI---PVVDIAPDSKFAQLTNEQTFLGL 549 (794)
T ss_pred cccCcchhhhhccccceEeecCCCCCceEEEecCCCc----EEEE--eecCCCc---ceeEecccccccccCCCceEEEE
Confidence 34467666665554 455555 556899999987676 5664 5321111 111222110 023445543
Q ss_pred ecCCCCccceEEEEECCCC--eEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccc
Q 039428 120 TDVLGNKYSALAAYDLSTW--KRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTA 197 (335)
Q Consensus 120 ~D~~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~ 197 (335)
.+ +.|+++|++-. +++. .....-.. .+....++.+.+|.+-|+ +..|.|..+|.-|+..+.+- +.+.
T Consensus 550 s~------n~lfriDpR~~~~k~v~-~~~k~Y~~-~~~Fs~~aTt~~G~iavg-s~~G~IRLyd~~g~~AKT~l-p~lG- 618 (794)
T PF08553_consen 550 SD------NSLFRIDPRLSGNKLVD-SQSKQYSS-KNNFSCFATTEDGYIAVG-SNKGDIRLYDRLGKRAKTAL-PGLG- 618 (794)
T ss_pred CC------CceEEeccCCCCCceee-cccccccc-CCCceEEEecCCceEEEE-eCCCcEEeecccchhhhhcC-CCCC-
Confidence 32 46999999732 3331 11111111 345567889999988886 66789999997664432100 1111
Q ss_pred ccccccccccCeEEEccCCeEEEEECCCCEEEEEeC
Q 039428 198 KEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDI 233 (335)
Q Consensus 198 ~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~ 233 (335)
.-..||.++.||.-.++-+.+ .|..++.
T Consensus 619 -------~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 619 -------DPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred -------CCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 126899999999544454444 3455553
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=89.57 E-value=20 Score=34.32 Aligned_cols=139 Identities=13% Similarity=0.163 Sum_probs=72.4
Q ss_pred CceeECCCCcEEEEeCCCCeEEEEccCCcEE-EEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCC
Q 039428 157 DDIAVDAEGNAYVTDVVSSKIWKVGVEGQLL-SIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 157 ~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~-~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~ 235 (335)
.++...++|.+++.... |.+++-+.+|... ..... +......++++.++|.+|++... +.+++-+-.+
T Consensus 242 ~~v~~~~dG~~~~vg~~-G~~~~s~d~G~~~W~~~~~---------~~~~~l~~v~~~~dg~l~l~g~~-G~l~~S~d~G 310 (398)
T PLN00033 242 STVNRSPDGDYVAVSSR-GNFYLTWEPGQPYWQPHNR---------ASARRIQNMGWRADGGLWLLTRG-GGLYVSKGTG 310 (398)
T ss_pred eeEEEcCCCCEEEEECC-ccEEEecCCCCcceEEecC---------CCccceeeeeEcCCCCEEEEeCC-ceEEEecCCC
Confidence 34566777777766443 4566665555431 11111 11234678889989988877644 5566554443
Q ss_pred Cce---eEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC---cEEEEEeeeecCCCCCcceEEEE-eC
Q 039428 236 EEE---EVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG---WETASVVAKFNGPTHRVATAATV-KD 308 (335)
Q Consensus 236 ~~~---~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~---~~~~~~~~~~~~p~~~~Pt~va~-~~ 308 (335)
... ....+.... . .....++.+.+++.+|+++. +++ ++...++ |+.......+. ... ..+.+ ++
T Consensus 311 ~~~~~~~f~~~~~~~-~-~~~l~~v~~~~d~~~~a~G~--~G~-v~~s~D~G~tW~~~~~~~~~~--~~l--y~v~f~~~ 381 (398)
T PLN00033 311 LTEEDFDFEEADIKS-R-GFGILDVGYRSKKEAWAAGG--SGI-LLRSTDGGKSWKRDKGADNIA--ANL--YSVKFFDD 381 (398)
T ss_pred CcccccceeecccCC-C-CcceEEEEEcCCCcEEEEEC--CCc-EEEeCCCCcceeEccccCCCC--cce--eEEEEcCC
Confidence 210 112222111 0 12256788888899999976 333 3344444 54422112221 111 25665 46
Q ss_pred CeEEEEe
Q 039428 309 GRVYLSH 315 (335)
Q Consensus 309 g~lyV~~ 315 (335)
++.|+.-
T Consensus 382 ~~g~~~G 388 (398)
T PLN00033 382 KKGFVLG 388 (398)
T ss_pred CceEEEe
Confidence 8888854
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.52 E-value=13 Score=36.41 Aligned_cols=199 Identities=15% Similarity=0.137 Sum_probs=103.0
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECC------CCCCCcceeeeeEEeecCCcCC--CCcceEEEeCCCCeEEEEEecCC
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVP------DEYSPGTVLEEVKLVKEDDVVG--NATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~------~g~~~~~v~~~~~~~~~~~~~~--~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
-++++.+.+...|....+|.|..|..+ +...|. .+.. -+.| ....+++++....+|..|++|.
T Consensus 348 l~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~-------vl~~-~l~Ghtdavw~l~~s~~~~~Llscs~Dg- 418 (577)
T KOG0642|consen 348 LCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPS-------VLSG-TLLGHTDAVWLLALSSTKDRLLSCSSDG- 418 (577)
T ss_pred EEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcc-------hhcc-ceeccccceeeeeecccccceeeecCCc-
Confidence 578889999998888889999999432 222110 1111 1111 2457999987778888876663
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccC--CcEEEEecCCccccccc
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVE--GQLLSIIRSPLFTAKEW 200 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~--g~~~~~~~~~~~~~~~~ 200 (335)
.|+.|++...... .+..+. ...+|--+.+-... .+-+++ .+-+.+.++.- +....++++.....+.
T Consensus 419 -----Tvr~w~~~~~~~~---~f~~~~-e~g~Plsvd~~ss~~a~~~~s-~~~~~~~~~~~ev~s~~~~~~s~~~~~~~- 487 (577)
T KOG0642|consen 419 -----TVRLWEPTEESPC---TFGEPK-EHGYPLSVDRTSSRPAHSLAS-FRFGYTSIDDMEVVSDLLIFESSASPGPR- 487 (577)
T ss_pred -----eEEeeccCCcCcc---ccCCcc-ccCCcceEeeccchhHhhhhh-cccccccchhhhhhhheeeccccCCCccc-
Confidence 5888887655441 122222 24566444443222 122222 22233333321 1222223221111110
Q ss_pred cccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEE
Q 039428 201 YKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARL 277 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v 277 (335)
.....|=++..|.+-+-++...++.|..+|-..++ ....... .....+++|+|++|-.+.+++..++++.
T Consensus 488 --~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~-~l~s~~a----~~~svtslai~~ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 488 --RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK-ILHSMVA----HKDSVTSLAIDPNGPYLMSGSHDGSVRL 557 (577)
T ss_pred --ccCccceEEecCCCCeeEecccCCceecccccccc-cchheee----ccceecceeecCCCceEEeecCCceeeh
Confidence 11123444555555555566677777777766652 1111111 1234689999999887777664455543
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=89.52 E-value=17 Score=33.40 Aligned_cols=154 Identities=11% Similarity=-0.015 Sum_probs=66.6
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-.++...++|+.+.++...+-...+|+ ...+ |.........+.+.|.+++ ++.||++. .. ..|
T Consensus 147 ~~~~~r~~dG~~vavs~~G~~~~s~~~-G~~~---------w~~~~r~~~~riq~~gf~~-~~~lw~~~--~G----g~~ 209 (302)
T PF14870_consen 147 INDITRSSDGRYVAVSSRGNFYSSWDP-GQTT---------WQPHNRNSSRRIQSMGFSP-DGNLWMLA--RG----GQI 209 (302)
T ss_dssp EEEEEE-TTS-EEEEETTSSEEEEE-T-T-SS----------EEEE--SSS-EEEEEE-T-TS-EEEEE--TT----TEE
T ss_pred eEeEEECCCCcEEEEECcccEEEEecC-CCcc---------ceEEccCccceehhceecC-CCCEEEEe--CC----cEE
Confidence 345666788886666654445556663 2321 2211111224678999997 79999853 21 235
Q ss_pred EEEE-CCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 131 AAYD-LSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 131 ~~~d-~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
..-+ +...+. +.....+........-+++..+++.+|++.. ++.+++=+-+|+.-+... .......+..-
T Consensus 210 ~~s~~~~~~~~-w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~S~DgGktW~~~~-------~~~~~~~n~~~ 280 (302)
T PF14870_consen 210 QFSDDPDDGET-WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLVSTDGGKTWQKDR-------VGENVPSNLYR 280 (302)
T ss_dssp EEEE-TTEEEE-E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEEESSTTSS-EE-G-------GGTTSSS---E
T ss_pred EEccCCCCccc-cccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEEeCCCCccceECc-------cccCCCCceEE
Confidence 5544 222222 2221211111123346789999999999754 456666555555432110 00111224556
Q ss_pred EEEccCCeEEEEECCCCEEEEE
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKI 231 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~ 231 (335)
|.|.++..-|+-- .+|-|.|+
T Consensus 281 i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 281 IVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp EEEEETTEEEEE--STTEEEEE
T ss_pred EEEcCCCceEEEC-CCcEEEEe
Confidence 6666554444332 34445543
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=89.41 E-value=22 Score=34.71 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=81.1
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-----CCeEEEEccCCcE
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-----SSKIWKVGVEGQL 186 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-----~~~I~~~d~~g~~ 186 (335)
++.|||...-......+.+++||+.+.+-........... ...-..+++ -++++||.... ...++++|+....
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~-~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPT-PRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCC-CccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 6889996321111112469999999875443222210000 111122333 35679997543 2457888887544
Q ss_pred EEEecCCccccccccccccccCeEEEccCCeEEEEECC----CCEEEEEeCCCCceeEEEEeccCCcCCCC-CCeEEEcC
Q 039428 187 LSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC----SGNLFKIDIRKEEEEVKLIELRGGSSLSL-GDGLALLS 261 (335)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~----~~~v~~~d~~~~~~~~~~~~~~g~~~~~~-pdGia~d~ 261 (335)
-..+.. +...+....-.++++. ++.+|+.-.. .+.++++|+... ....+...+..+... -.+++. -
T Consensus 306 W~~~~~-----~~~~~~~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~yD~~t~--~W~~~~~~g~~P~~R~~~~~~~-~ 376 (470)
T PLN02193 306 WFHCST-----PGDSFSIRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYYDPVQD--KWTQVETFGVRPSERSVFASAA-V 376 (470)
T ss_pred EEeCCC-----CCCCCCCCCCcEEEEE-CCcEEEEECCCCCccCceEEEECCCC--EEEEeccCCCCCCCcceeEEEE-E
Confidence 332111 1000111112344444 6778875432 267999999887 555554322111111 123333 3
Q ss_pred CCcEEEEecC--------------CCeEEEEEcCCC-cEEE
Q 039428 262 PTKLVVAGNP--------------YPSARLVESSDG-WETA 287 (335)
Q Consensus 262 ~g~l~va~~~--------------~~~~~v~~~~~~-~~~~ 287 (335)
++++||.+.. .+.+++++.... |...
T Consensus 377 ~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 377 GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 4789998442 134666766555 7643
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=89.34 E-value=15 Score=32.75 Aligned_cols=140 Identities=13% Similarity=0.038 Sum_probs=75.3
Q ss_pred EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCC--cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCe
Q 039428 62 RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNA--TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWK 139 (335)
Q Consensus 62 ~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~--p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~ 139 (335)
++|+....+++.-+|+..|+ +. |-.. .+.+ ...+.+ ++.+.+ +-.. ..++.++.++|.
T Consensus 25 ~v~igSHs~~~~avd~~sG~-----~~---We~i---lg~RiE~sa~vv---gdfVV~--GCy~----g~lYfl~~~tGs 84 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGN-----LI---WEAI---LGVRIECSAIVV---GDFVVL--GCYS----GGLYFLCVKTGS 84 (354)
T ss_pred EEEEecCCceEEEecCCCCc-----EE---eehh---hCceeeeeeEEE---CCEEEE--EEcc----CcEEEEEecchh
Confidence 44445677888889877666 11 3211 1112 123333 233333 2222 348889998886
Q ss_pred EEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEcc-CCeE
Q 039428 140 RLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHP-DGFL 218 (335)
Q Consensus 140 ~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~-dg~L 218 (335)
..+....... ---...+|+++.+....+.++..|.+|+...--. ++. .-+ +.--.+-++++ ++.|
T Consensus 85 ~~w~f~~~~~-----vk~~a~~d~~~glIycgshd~~~yalD~~~~~cV-yks---kcg-----G~~f~sP~i~~g~~sl 150 (354)
T KOG4649|consen 85 QIWNFVILET-----VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCV-YKS---KCG-----GGTFVSPVIAPGDGSL 150 (354)
T ss_pred heeeeeehhh-----hccceEEcCCCceEEEecCCCcEEEecccccceE-Eec---ccC-----CceeccceecCCCceE
Confidence 5533222111 1112567888654444588888999998754322 111 000 01122346777 7799
Q ss_pred EEEECCCCEEEEEeCCCC
Q 039428 219 IVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 219 yvad~~~~~v~~~d~~~~ 236 (335)
|++.+ .|+|.++..+..
T Consensus 151 y~a~t-~G~vlavt~~~~ 167 (354)
T KOG4649|consen 151 YAAIT-AGAVLAVTKNPY 167 (354)
T ss_pred EEEec-cceEEEEccCCC
Confidence 98874 667777777664
|
|
| >KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.30 E-value=26 Score=37.18 Aligned_cols=180 Identities=18% Similarity=0.175 Sum_probs=112.4
Q ss_pred eeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 52 ETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
..+..+..++..+.. .....|.+... .+.. .. ... ..+. -.+.|+++|--.+++|- .|.... .+
T Consensus 440 ~~~d~d~~~~~i~~~d~~~~~i~~~~~-~~~~----~~--~~~-~~g~--~~~~~lavD~~~~~~y~--tDe~~~---~i 504 (877)
T KOG1215|consen 440 VALDFDVLNNRIYWADLSDEKICRASQ-DGSS----EC--ELC-GDGL--CIPEGLAVDWIGDNIYW--TDEGNC---LI 504 (877)
T ss_pred eEEEEEecCCEEEEEeccCCeEeeecc-CCCc----cc--eEe-ccCc--cccCcEEEEeccCCcee--cccCCc---ee
Confidence 344445445555555 77788888864 3441 11 112 1221 25789999976788888 565543 35
Q ss_pred EEEECCCCe--EEEEeecCCCccCCCCCCceeECCC-CcEEEEeCC-CCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 131 AAYDLSTWK--RLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVV-SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 131 ~~~d~~~~~--~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~-~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
.+.++++.. ++.... ...|..++++|. |.+|.+|+. ..+|-|-..+|.....+... ...-
T Consensus 505 ~v~~~~g~~~~vl~~~~-------l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~---------~~~~ 568 (877)
T KOG1215|consen 505 EVADLDGSSRKVLVSKD-------LDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTN---------GILW 568 (877)
T ss_pred EEEEccCCceeEEEecC-------CCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeC---------CccC
Confidence 555544432 222111 246778999995 889999987 45788888888665433211 1234
Q ss_pred cCeEEEccCC-eEEEEECCCC-EEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 207 LNGIVYHPDG-FLIVIHMCSG-NLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 207 p~Gia~~~dg-~Lyvad~~~~-~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
|+|++++-.. .+|.+|.... .+.+++.++. ..+ +.... .+.-|.++++-.+ .+|-+
T Consensus 569 p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~--~r~-~~~~~--~~~~p~~~~~~~~-~iyw~ 626 (877)
T KOG1215|consen 569 PNGLTIDYETDRLYWADAKLDYTIESANMDGQ--NRR-VVDSE--DLPHPFGLSVFED-YIYWT 626 (877)
T ss_pred CCcceEEeecceeEEEcccCCcceeeeecCCC--ceE-Eeccc--cCCCceEEEEecc-eeEEe
Confidence 9999999855 9999999888 7999999987 333 22211 1456889998765 44444
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=88.95 E-value=19 Score=33.12 Aligned_cols=195 Identities=13% Similarity=0.079 Sum_probs=90.4
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.....|++..+.+-|++. ..+.|++=+. .|+. -+. .....+....-.-+.|.++ ++..|++. +.
T Consensus 17 ~~l~dV~F~d~~~G~~VG-~~g~il~T~D-GG~t----W~~-~~~~~~~~~~~~l~~I~f~--~~~g~ivG-~~------ 80 (302)
T PF14870_consen 17 KPLLDVAFVDPNHGWAVG-AYGTILKTTD-GGKT----WQP-VSLDLDNPFDYHLNSISFD--GNEGWIVG-EP------ 80 (302)
T ss_dssp S-EEEEEESSSS-EEEEE-TTTEEEEESS-TTSS-----EE------S-----EEEEEEEE--TTEEEEEE-ET------
T ss_pred CceEEEEEecCCEEEEEe-cCCEEEEECC-CCcc----ccc-cccCCCccceeeEEEEEec--CCceEEEc-CC------
Confidence 356899998766666665 4678888864 3441 111 0111111000124567776 45678753 22
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
.++....++|+.-..+++..+- ...|..+....++.++++. ..+.||+-+-.|+.-+.+..+ .....+
T Consensus 81 g~ll~T~DgG~tW~~v~l~~~l--pgs~~~i~~l~~~~~~l~~-~~G~iy~T~DgG~tW~~~~~~---------~~gs~~ 148 (302)
T PF14870_consen 81 GLLLHTTDGGKTWERVPLSSKL--PGSPFGITALGDGSAELAG-DRGAIYRTTDGGKTWQAVVSE---------TSGSIN 148 (302)
T ss_dssp TEEEEESSTTSS-EE----TT---SS-EEEEEEEETTEEEEEE-TT--EEEESSTTSSEEEEE-S-------------EE
T ss_pred ceEEEecCCCCCcEEeecCCCC--CCCeeEEEEcCCCcEEEEc-CCCcEEEeCCCCCCeeEcccC---------CcceeE
Confidence 1444445566543333332111 2344556655566666653 457888887766543322111 112366
Q ss_pred eEEEccCCeEEEEECCCCEEEEE-eCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEE
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKI-DIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLV 278 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~-d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~ 278 (335)
.+..++||.++... ..|.+++- ++... ..+...... ...-..|.+.+++.||+...+ +.++.-
T Consensus 149 ~~~r~~dG~~vavs-~~G~~~~s~~~G~~--~w~~~~r~~---~~riq~~gf~~~~~lw~~~~G-g~~~~s 212 (302)
T PF14870_consen 149 DITRSSDGRYVAVS-SRGNFYSSWDPGQT--TWQPHNRNS---SRRIQSMGFSPDGNLWMLARG-GQIQFS 212 (302)
T ss_dssp EEEE-TTS-EEEEE-TTSSEEEEE-TT-S--S-EEEE--S---SS-EEEEEE-TTS-EEEEETT-TEEEEE
T ss_pred eEEECCCCcEEEEE-CcccEEEEecCCCc--cceEEccCc---cceehhceecCCCCEEEEeCC-cEEEEc
Confidence 77788898643333 44555544 44333 344444322 133678999999999998763 444433
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.64 E-value=21 Score=33.30 Aligned_cols=238 Identities=11% Similarity=0.107 Sum_probs=123.9
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEE-ecCC------
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAF-TDVL------ 123 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~-~D~~------ 123 (335)
-..+.++|.--+.++...+.+|..+|..+++ ++ .+++... .....|.+|. .|.+.+.. .|..
T Consensus 111 vt~v~~hp~~~~v~~as~d~tikv~D~~tg~-----~e--~~LrGHt---~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 111 VTRVIFHPSEALVVSASEDATIKVFDTETGE-----LE--RSLRGHT---DSVFDISFDA-SGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred eeeeeeccCceEEEEecCCceEEEEEccchh-----hh--hhhhccc---cceeEEEEec-CccEEEecCCccchhheeH
Confidence 3566778876655555678999999976665 22 1332222 2467888885 56555542 2331
Q ss_pred -----------CCc--------------------cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC
Q 039428 124 -----------GNK--------------------YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV 172 (335)
Q Consensus 124 -----------~~~--------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~ 172 (335)
++. ...|..|+.+++.-+.. +.++ .....-+.+..||+|+.+.+
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t--~~~h---~ewvr~v~v~~DGti~As~s 254 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT--FPGH---SEWVRMVRVNQDGTIIASCS 254 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEe--ccCc---hHhEEEEEecCCeeEEEecC
Confidence 000 12334444444422211 2111 12334577888999999888
Q ss_pred CCCeEEEEccCCcE-EEEecCCcccccc--cccccccc--CeEEEcc-CCeEEEEECCCCEEEEEeCCCCceeEEEEecc
Q 039428 173 VSSKIWKVGVEGQL-LSIIRSPLFTAKE--WYKNVFGL--NGIVYHP-DGFLIVIHMCSGNLFKIDIRKEEEEVKLIELR 246 (335)
Q Consensus 173 ~~~~I~~~d~~g~~-~~~~~~~~~~~~~--~~~~~~~p--~Gia~~~-dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~ 246 (335)
...+|.++-...+. ...+....+..+. ..+.-..| ..-+=+. .+...++-+.++.|...|...+. - .+.+.
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-c--L~tL~ 331 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-C--LFTLV 331 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe-E--EEEEe
Confidence 77766665544331 0001110111000 00000000 0000011 23566677778888888888763 2 23333
Q ss_pred CCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEeCCeEEEE
Q 039428 247 GGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVKDGRVYLS 314 (335)
Q Consensus 247 g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~ 314 (335)
| . .+...|+++.|.|++.++......++|.+.... +-...+..+ .-+-+++.+.....||.
T Consensus 332 g-h-dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~----~cmk~~~ah-~hfvt~lDfh~~~p~Vv 392 (406)
T KOG0295|consen 332 G-H-DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL----QCMKTLEAH-EHFVTSLDFHKTAPYVV 392 (406)
T ss_pred c-c-cceeeeeEEcCCCeEEEEEecCCcEEEEEeccc----eeeeccCCC-cceeEEEecCCCCceEE
Confidence 3 3 356889999999998888554477888887543 112222212 22335566656667874
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.61 E-value=19 Score=32.91 Aligned_cols=180 Identities=12% Similarity=0.088 Sum_probs=101.0
Q ss_pred EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEE
Q 039428 62 RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRL 141 (335)
Q Consensus 62 ~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~ 141 (335)
.++....+|.|..|+. +.+ +...++ .... ...++|+++| .+.|-.+..+ + ..+..||+=.|+..
T Consensus 99 hLlS~sdDG~i~iw~~--~~W-----~~~~sl--K~H~-~~Vt~lsiHP-S~KLALsVg~---D--~~lr~WNLV~Gr~a 162 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRV--GSW-----ELLKSL--KAHK-GQVTDLSIHP-SGKLALSVGG---D--QVLRTWNLVRGRVA 162 (362)
T ss_pred heeeecCCCcEEEEEc--CCe-----EEeeee--cccc-cccceeEecC-CCceEEEEcC---C--ceeeeehhhcCccc
Confidence 3444467899999984 442 211122 2222 2478999998 6777664332 2 35888998777766
Q ss_pred EEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEE
Q 039428 142 FLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIV 220 (335)
Q Consensus 142 ~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyv 220 (335)
+..++ .+.+.-+.++|.|. ++|.-...=.||.++...-+.+ ...| ..+..+.+...+.|+|
T Consensus 163 ~v~~L------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~------i~~~------~r~l~~~~l~~~~L~v 224 (362)
T KOG0294|consen 163 FVLNL------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFRE------IENP------KRILCATFLDGSELLV 224 (362)
T ss_pred eeecc------CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhh------hhcc------ccceeeeecCCceEEE
Confidence 66666 24455599999997 5554433334444443321111 1110 2255566664557777
Q ss_pred EECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEE-E-cCCCcEEEEecCCCeEEEEEcC
Q 039428 221 IHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLA-L-LSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 221 ad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia-~-d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.- .+..|...|.+... ....+.... +..-+|+ + ++++.+.++-.-.+.|+|.+.+
T Consensus 225 G~-d~~~i~~~D~ds~~-~~~~~~AH~----~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 225 GG-DNEWISLKDTDSDT-PLTEFLAHE----NRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred ec-CCceEEEeccCCCc-cceeeecch----hheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 64 45778888888652 233332221 2345666 3 3456666664434667776654
|
|
| >COG4222 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.51 E-value=4 Score=38.69 Aligned_cols=70 Identities=19% Similarity=0.441 Sum_probs=45.7
Q ss_pred EEEeCCCCeEEEEccCCcEEEEecCC-cccccc---ccccccccCeEEEccCC-eEEEEECC---------------CCE
Q 039428 168 YVTDVVSSKIWKVGVEGQLLSIIRSP-LFTAKE---WYKNVFGLNGIVYHPDG-FLIVIHMC---------------SGN 227 (335)
Q Consensus 168 yV~d~~~~~I~~~d~~g~~~~~~~~~-~~~~~~---~~~~~~~p~Gia~~~dg-~Lyvad~~---------------~~~ 227 (335)
||.|..+.-|++++++|+.++.+..+ .+..+. ....-.+-.|++++||+ +||-.-.. .-|
T Consensus 159 ~igdefgP~l~~f~~~Gk~~~~~~~~~~~~~~~~p~g~~~n~gfEglait~d~~~L~~~le~~l~~d~~~~d~~~~~~lR 238 (391)
T COG4222 159 WIGDEFGPYLLEFDANGKLVRVLEVPVRFLPPDNPKGLRNNLGFEGLAITPDGKKLYALLEGALAQDGNKADPTGGSPLR 238 (391)
T ss_pred ccccccCcceEEECCCCccccccccccccCcCCCccccccccceeeEEecCCCceEEEEEeccccccccccCcccccceE
Confidence 88899999999999999887653221 111111 11122357899999999 78853211 247
Q ss_pred EEEEeCCCCc
Q 039428 228 LFKIDIRKEE 237 (335)
Q Consensus 228 v~~~d~~~~~ 237 (335)
+..+|+...+
T Consensus 239 il~~d~~~~~ 248 (391)
T COG4222 239 ILEYDLATKQ 248 (391)
T ss_pred EEEEecccCc
Confidence 8888887763
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.02 E-value=27 Score=34.34 Aligned_cols=117 Identities=11% Similarity=0.159 Sum_probs=75.9
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc--EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN--AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~--lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
.|+-++.++.... +++.. .+-..|++..++|+ ..|-..+...+..+|++++.+--++. .|
T Consensus 252 ~Lyll~t~g~s~~--V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~e----gp-------- 313 (566)
T KOG2315|consen 252 TLYLLATQGESVS--VPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPE----GP-------- 313 (566)
T ss_pred eEEEEEecCceEE--EecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCC----CC--------
Confidence 5777776643333 34421 23457899999995 44456778899999999987652221 11
Q ss_pred cCeEEEccCC-eEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 207 LNGIVYHPDG-FLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 207 p~Gia~~~dg-~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
-|.+-++|.| .|.++-.++ |.|-.+|....+ .+..+...+ -.=+.+.|||..+++..
T Consensus 314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K-~i~~~~a~~------tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK-LIAKFKAAN------TTVFEWSPDGEYFLTAT 373 (566)
T ss_pred ccceEECCCCCEEEEeecCCCCCceEEEeccchh-hccccccCC------ceEEEEcCCCcEEEEEe
Confidence 4888999999 556676654 788888887753 333333222 33467779998777754
|
|
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=87.89 E-value=19 Score=32.06 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=55.6
Q ss_pred ceEEEEECCCCeEEEEeecCCC-ccCCCCCCceeECC--C-CcEE--EEeCCCCeEEEEcc----CCcEEEEecCCcccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGK-SEEKSTADDIAVDA--E-GNAY--VTDVVSSKIWKVGV----EGQLLSIIRSPLFTA 197 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~-~~~~~~p~~~~vd~--~-G~ly--V~d~~~~~I~~~d~----~g~~~~~~~~~~~~~ 197 (335)
-.++.+|++.+.+....+...+ ......+.|++.-+ . |.+| |++.. |.|..+.. +|+....+- ..|+.
T Consensus 126 i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~q-G~~~Qy~l~d~gnGkv~~k~v-R~fk~ 203 (364)
T COG4247 126 IVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQ-GDIAQYKLIDQGNGKVGTKLV-RQFKI 203 (364)
T ss_pred EEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCC-CceeEEEEEecCCceEcceee-Eeeec
Confidence 4567788887766544443221 12256778888754 3 6544 44433 55554432 122211000 12332
Q ss_pred ccccccccccCeEEEccC-CeEEEEECCCCEEEEEeCCCC
Q 039428 198 KEWYKNVFGLNGIVYHPD-GFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 198 ~~~~~~~~~p~Gia~~~d-g~Lyvad~~~~~v~~~d~~~~ 236 (335)
+ ....|+..+.+ |+||+++. +-.||++..+.+
T Consensus 204 ~------tQTEG~VaDdEtG~LYIaeE-dvaiWK~~Aep~ 236 (364)
T COG4247 204 P------TQTEGMVADDETGFLYIAEE-DVAIWKYEAEPN 236 (364)
T ss_pred C------CcccceeeccccceEEEeec-cceeeecccCCC
Confidence 1 24678888865 59999984 556999987764
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.78 E-value=2 Score=41.69 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=63.2
Q ss_pred CCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEe
Q 039428 153 KSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKID 232 (335)
Q Consensus 153 ~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d 232 (335)
...+|..++.+||....+=+..+.+.+||-+...+. ..+.. =+.+.-.++|+|||..+++-..+.-|.++.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl----g~mkS-----YFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL----GVMKS-----YFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHH----HHHHh-----hccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 357889999999987777788888888888765433 11111 123477899999998888887777666665
Q ss_pred CCCCceeEEEEeccCCcCCCCCCeEEEcC
Q 039428 233 IRKEEEEVKLIELRGGSSLSLGDGLALLS 261 (335)
Q Consensus 233 ~~~~~~~~~~~~~~g~~~~~~pdGia~d~ 261 (335)
.... +++....++ -.....+++|+
T Consensus 361 f~er----RVVARGqGH-kSWVs~VaFDp 384 (636)
T KOG2394|consen 361 FEER----RVVARGQGH-KSWVSVVAFDP 384 (636)
T ss_pred eccc----eEEEecccc-ccceeeEeecc
Confidence 5433 444431112 23466788886
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.50 E-value=35 Score=34.57 Aligned_cols=154 Identities=23% Similarity=0.200 Sum_probs=94.3
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d 181 (335)
..+.+++-|++..|.++ ++ ++++.||+..|.+... +.+. ....+-++...||..|.+.+....|..++
T Consensus 14 ci~d~afkPDGsqL~lA-Ag------~rlliyD~ndG~llqt--LKgH---KDtVycVAys~dGkrFASG~aDK~VI~W~ 81 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-AG------SRLLVYDTSDGTLLQP--LKGH---KDTVYCVAYAKDGKRFASGSADKSVIIWT 81 (1081)
T ss_pred chheeEECCCCceEEEe-cC------CEEEEEeCCCcccccc--cccc---cceEEEEEEccCCceeccCCCceeEEEec
Confidence 67899999865566664 33 4699999988765522 2211 34567799999999999888777777777
Q ss_pred cCCc-EEEEecCC-----ccc-----------------ccc-----ccccccccCeEEEccCCeEEEEECCCCEEEEEeC
Q 039428 182 VEGQ-LLSIIRSP-----LFT-----------------AKE-----WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDI 233 (335)
Q Consensus 182 ~~g~-~~~~~~~~-----~~~-----------------~~~-----~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~ 233 (335)
++-+ .++.-... .|. +++ ........++-++..||+.+.-...+|.|..=+.
T Consensus 82 ~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 82 SKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred ccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 6521 22211000 010 011 0112234789999999987777778888876555
Q ss_pred CCCceeEEEEeccCCcCCCCCCeEEEcCC------CcEEEEec
Q 039428 234 RKEEEEVKLIELRGGSSLSLGDGLALLSP------TKLVVAGN 270 (335)
Q Consensus 234 ~~~~~~~~~~~~~g~~~~~~pdGia~d~~------g~l~va~~ 270 (335)
.++ ....+..+|+. -....++++.|+ ..+-|+++
T Consensus 162 ~gE--ek~~I~Rpgg~-Nspiwsi~~~p~sg~G~~di~aV~DW 201 (1081)
T KOG1538|consen 162 NGE--EKVKIERPGGS-NSPIWSICWNPSSGEGRNDILAVADW 201 (1081)
T ss_pred CCC--cceEEeCCCCC-CCCceEEEecCCCCCCccceEEEEec
Confidence 554 44556655522 223477887765 23555565
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.45 E-value=13 Score=34.95 Aligned_cols=165 Identities=12% Similarity=0.130 Sum_probs=82.9
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEe--CCCCeEEEEEecCCCCcc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVD--RPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d--~~~g~l~v~~~D~~~~~~ 127 (335)
--+.+.++++|..+..-..+ ...+|+..++.. +.+..-.+.+. .-.-+.+. +++..|+++..-...
T Consensus 188 eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~----~a~~t~~~k~~----~~~~cRF~~d~~~~~l~laa~~~~~--- 255 (398)
T KOG0771|consen 188 EVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA----LARKTPFSKDE----MFSSCRFSVDNAQETLRLAASQFPG--- 255 (398)
T ss_pred ccccceeCCCCcEEEEecCC-ceEEEEeccCch----hhhcCCcccch----hhhhceecccCCCceEEEEEecCCC---
Confidence 45789999999755444333 666666555642 11100001111 11223332 223467775321111
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
..|..+|.....--........-..+.....++|+.+|++..-.+..|.|..++...-....+ .+ .......
T Consensus 256 ~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~-----vk---~aH~~~V 327 (398)
T KOG0771|consen 256 GGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY-----VK---EAHLGFV 327 (398)
T ss_pred CceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe-----eh---hhheeee
Confidence 235555543211100001111111245667799999999888888999999998764322211 11 0122357
Q ss_pred CeEEEccCCeEEEEECCCC--EEEEEeCC
Q 039428 208 NGIVYHPDGFLIVIHMCSG--NLFKIDIR 234 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~--~v~~~d~~ 234 (335)
.+++|+||-+-..+-+..+ .|.++..+
T Consensus 328 T~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 328 TGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred eeEEEcCCcCcccccccCCceeEEEEeec
Confidence 8999999874333333333 45555543
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.43 E-value=19 Score=31.41 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=50.4
Q ss_pred CCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeC
Q 039428 154 STADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDI 233 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~ 233 (335)
.....+++||.|++.++.........+|..|.... +.|.+ .......+-|+|.-+...+-+-..+|..-|+
T Consensus 232 savaav~vdpsgrll~sg~~dssc~lydirg~r~i----q~f~p-----hsadir~vrfsp~a~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI----QRFHP-----HSADIRCVRFSPGAHYLLTCSYDMKIKLTDL 302 (350)
T ss_pred ceeEEEEECCCcceeeeccCCCceEEEEeeCCcee----eeeCC-----CccceeEEEeCCCceEEEEecccceEEEeec
Confidence 45667999999999999877777777887665432 12331 1223678889987744445556677877787
Q ss_pred CCC
Q 039428 234 RKE 236 (335)
Q Consensus 234 ~~~ 236 (335)
.+.
T Consensus 303 qgd 305 (350)
T KOG0641|consen 303 QGD 305 (350)
T ss_pred ccc
Confidence 775
|
|
| >COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.60 E-value=10 Score=34.08 Aligned_cols=185 Identities=15% Similarity=0.075 Sum_probs=92.8
Q ss_pred CccchhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCc-eeEEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCC
Q 039428 1 MALSLCFTKTLLFFFIISAIPIAYIISIELAIAMAKPAT-HVYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPD 79 (335)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~ 79 (335)
|+++..+.|.+ +++.++.+|+.+--. ..+.+++ ..++++... ---+++|..++++.+.-...+.|..-|+ .
T Consensus 1 m~~~~s~~~av-lvl~fav~~v~~s~~-----p~~ap~p~~~velp~~s-~~l~ia~~~~g~~gwlVg~rgtiletdd-~ 72 (339)
T COG4447 1 MALSSSTRRAV-LVLGFAVICVLCSAV-----PLIAPNPWTDVELPTLS-PTLDIAFTESGSHGWLVGGRGTILETDD-G 72 (339)
T ss_pred CchHHHHHHHH-HHHhHHhheeccccc-----cccCCCcceeeeccccC-cccceeEeecCcceEEEcCcceEEEecC-C
Confidence 67777666654 456677777764322 2223322 224443322 1247889888888877767789999874 3
Q ss_pred CCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCc
Q 039428 80 EYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADD 158 (335)
Q Consensus 80 g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~ 158 (335)
+.. |.+.....+ ..-+.+.+.. ..=|+. ++. +.|++- .+.|+....+.... +....|.+
T Consensus 73 g~t---------w~qal~~~gr~~f~sv~f~~--~egw~v-----Ge~-sqll~T-~DgGqsWARi~~~e--~~eg~~~s 132 (339)
T COG4447 73 GIT---------WAQALDFLGRHAFHSVSFLG--MEGWIV-----GEP-SQLLHT-TDGGQSWARIPLSE--KLEGFPDS 132 (339)
T ss_pred ccc---------chhhhchhhhhheeeeeeec--cccccc-----CCc-ceEEEe-cCCCcchhhchhhc--CCCCCcce
Confidence 431 211111111 1123333331 122332 111 345543 34555443333321 12567888
Q ss_pred eeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEE
Q 039428 159 IAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIH 222 (335)
Q Consensus 159 ~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad 222 (335)
|.+-.+.+ ..++| .+.|++-+-.|+.-+.+. +.. -....||.|+.+.|+ .+-|..
T Consensus 133 I~f~d~q~g~m~gd--~Gail~T~DgGk~Wk~l~-e~~------v~~~~~n~ia~s~dng~vaVg~ 189 (339)
T COG4447 133 ITFLDDQRGEMLGD--QGAILKTTDGGKNWKALV-EKA------VGLAVPNEIARSADNGYVAVGA 189 (339)
T ss_pred eEEecchhhhhhcc--cceEEEecCCcccHhHhc-ccc------cchhhhhhhhhhccCCeEEEec
Confidence 88765544 44455 458888876665432111 000 012347777777776 454543
|
|
| >PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller | Back alignment and domain information |
|---|
Probab=86.47 E-value=0.58 Score=28.53 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=16.2
Q ss_pred CCCeEEEcCCCcEEEEec
Q 039428 253 LGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 253 ~pdGia~d~~g~l~va~~ 270 (335)
.+.+|++|++|++||++.
T Consensus 14 ~~~~IavD~~GNiYv~G~ 31 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGY 31 (38)
T ss_pred eEEEEEECCCCCEEEEEe
Confidence 488999999999999965
|
SBBP stands for Seven Bladed Beta Propeller. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.46 E-value=28 Score=32.39 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=58.1
Q ss_pred CCCCceeECCCCcEEEEeCCCCeEEEEc-cCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEe
Q 039428 154 STADDIAVDAEGNAYVTDVVSSKIWKVG-VEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKID 232 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~~I~~~d-~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d 232 (335)
...++++++++|.+++. ...|.+++-. ..|+.-..... +.....+++++.+++.+|+... .+.+..-.
T Consensus 173 g~~~~i~~~~~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~---------~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s 241 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAV-SSRGNFYSTWEPGQTAWTPHQR---------NSSRRLQSMGFQPDGNLWMLAR-GGQIRFND 241 (334)
T ss_pred ceEEEEEECCCCeEEEE-eCCceEEEEcCCCCCeEEEeeC---------CCcccceeeeEcCCCCEEEEec-CCEEEEcc
Confidence 45678888888765544 4557787763 33332221111 1223578999999998877653 35443223
Q ss_pred CCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 233 IRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 233 ~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
.+++. ..+.+..+.........++++.+++.+|++..
T Consensus 242 ~d~G~-sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 242 PDDLE-SWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred CCCCC-ccccccCCccccccceeeEEEcCCCCEEEEcC
Confidence 44432 33322222100012245678888889999965
|
|
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=86.45 E-value=23 Score=31.54 Aligned_cols=144 Identities=18% Similarity=0.234 Sum_probs=68.7
Q ss_pred CCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEE--EEEeCCCCceeEE
Q 039428 164 EGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNL--FKIDIRKEEEEVK 241 (335)
Q Consensus 164 ~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v--~~~d~~~~~~~~~ 241 (335)
+-.+.++.-..+.+.++|.+|+.+..+..+.+..-+ .--.+..+|=+++ -.-.+|..+++| |+||++.+ .++
T Consensus 66 ~kS~vItt~Kk~Gl~VYDLsGkqLqs~~~Gk~NNVD-LrygF~LgG~~id---iaaASdR~~~~i~~y~Idp~~~--~L~ 139 (364)
T COG4247 66 DKSLVITTVKKAGLRVYDLSGKQLQSVNPGKYNNVD-LRYGFQLGGQSID---IAAASDRQNDKIVFYKIDPNPQ--YLE 139 (364)
T ss_pred CcceEEEeeccCCeEEEecCCCeeeecCCCcccccc-cccCcccCCeEEE---EEecccccCCeEEEEEeCCCcc--cee
Confidence 334445544556677777777766543222111000 0001113333333 112234445554 55666555 455
Q ss_pred EEeccC---CcCCCCCCeEEEcCC---CcEEEE-ecCCCeEEEEE---cCCCcEEEEEeeeecCCCCCcceEEEEe--CC
Q 039428 242 LIELRG---GSSLSLGDGLALLSP---TKLVVA-GNPYPSARLVE---SSDGWETASVVAKFNGPTHRVATAATVK--DG 309 (335)
Q Consensus 242 ~~~~~g---~~~~~~pdGia~d~~---g~l~va-~~~~~~~~v~~---~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g 309 (335)
.+.-+. ......+.|+++-.+ |.+||- +...+.++-+. ...|....+.+..|..|... .++..+ -|
T Consensus 140 sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQT--EG~VaDdEtG 217 (364)
T COG4247 140 SITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQT--EGMVADDETG 217 (364)
T ss_pred eccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcc--cceeeccccc
Confidence 553221 112456899999754 555555 22224444433 33345555666666655421 244343 68
Q ss_pred eEEEEe
Q 039428 310 RVYLSH 315 (335)
Q Consensus 310 ~lyV~~ 315 (335)
.|||++
T Consensus 218 ~LYIae 223 (364)
T COG4247 218 FLYIAE 223 (364)
T ss_pred eEEEee
Confidence 999954
|
|
| >PF14339 DUF4394: Domain of unknown function (DUF4394) | Back alignment and domain information |
|---|
Probab=86.17 E-value=23 Score=31.17 Aligned_cols=167 Identities=11% Similarity=0.061 Sum_probs=91.6
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEe-e--cCCcCCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLV-K--EDDVVGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~-~--~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
-.--||.+.|....+|.-...++||.+|+.++.. .. +- . .+.+. ....|+.|+|.-+||.|.+. .
T Consensus 27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~a-----T~--vg~s~~~~al~-g~~~gvDFNP~aDRlRvvs~-~--- 94 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAA-----TP--VGASPLTVALS-GTAFGVDFNPAADRLRVVSN-T--- 94 (236)
T ss_pred CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeE-----EE--eeccccccccc-CceEEEecCcccCcEEEEcc-C---
Confidence 3457999999977777776789999999766652 11 20 1 12222 23789999998899999743 2
Q ss_pred ccceEEEEECCCCeEE-EEeecCCC-cc--CCCCC--CceeECC-----C-C-cEEEEeCCCCeEEEEc-cCCcEEEEec
Q 039428 126 KYSALAAYDLSTWKRL-FLTQLSGK-SE--EKSTA--DDIAVDA-----E-G-NAYVTDVVSSKIWKVG-VEGQLLSIIR 191 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~-~~~~~~~~-~~--~~~~p--~~~~vd~-----~-G-~lyV~d~~~~~I~~~d-~~g~~~~~~~ 191 (335)
.+=+|+++++|.+. .-.++..+ +. ....| -+.+... . . .+|--|...+++++-+ |+...+...+
T Consensus 95 --GqNlR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~ppN~GtL~~vG 172 (236)
T PF14339_consen 95 --GQNLRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQNPPNDGTLNTVG 172 (236)
T ss_pred --CcEEEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEecCCCCCcEEeee
Confidence 24678899988743 11122111 00 00011 1222211 1 2 3677777777777773 3433333222
Q ss_pred CCccccccccccccccCeEEEccC--C--eEEEEE-CCCCEEEEEeCCCC
Q 039428 192 SPLFTAKEWYKNVFGLNGIVYHPD--G--FLIVIH-MCSGNLFKIDIRKE 236 (335)
Q Consensus 192 ~~~~~~~~~~~~~~~p~Gia~~~d--g--~Lyvad-~~~~~v~~~d~~~~ 236 (335)
.-.. ....-.|.-+.++ + ..|... ....++|++|+..+
T Consensus 173 ~LGv-------d~~~~~gFDI~~~~~~~~~a~a~~~~~~~~LY~vdL~TG 215 (236)
T PF14339_consen 173 PLGV-------DAAGDAGFDIAGDGNGGNAAYAVLGVGGSGLYTVDLTTG 215 (236)
T ss_pred cccc-------ccCcccceeeecCCCcceEEEEEecCCCcEEEEEECCCc
Confidence 1101 1122455656541 2 344333 22378999999987
|
|
| >PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A | Back alignment and domain information |
|---|
Probab=86.12 E-value=23 Score=31.06 Aligned_cols=102 Identities=18% Similarity=0.163 Sum_probs=53.7
Q ss_pred CCCCceeECCCCcEEEEeCCCCeEEEEccC---CcE----EEEecCCccccccccccccccCeEEEccCCeEEEEECCCC
Q 039428 154 STADDIAVDAEGNAYVTDVVSSKIWKVGVE---GQL----LSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSG 226 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~---g~~----~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~ 226 (335)
.....|+..|+|++|+... +.+|+..+. +.. .+.+++.. -..-.-|.+++.|.||.-. .++
T Consensus 34 ~~~~~i~~~P~g~lY~I~~--~~lY~~~~~~~~~~~~~~~~~~Ig~g~---------W~~F~~i~~d~~G~LYaV~-~~G 101 (229)
T PF14517_consen 34 NNFRDIAAGPNGRLYAIRN--DGLYRGSPSSSGGNTWDSGSKQIGDGG---------WNSFKFIFFDPTGVLYAVT-PDG 101 (229)
T ss_dssp TT-SEEEE-TTS-EEEEET--TEEEEES---STT--HHHH-EEEE-S----------GGG-SEEEE-TTS-EEEEE-TT-
T ss_pred cccceEEEcCCceEEEEEC--CceEEecCCccCcccccccCcccccCc---------ccceeEEEecCCccEEEec-ccc
Confidence 4566799999999999873 488888422 111 12222220 1124589999999999655 478
Q ss_pred EEEEEeCCCCce------eEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 227 NLFKIDIRKEEE------EVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 227 ~v~~~d~~~~~~------~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
+|+|.+.-...+ ..+.+...+ ....+-+..+++|.||....
T Consensus 102 ~lyR~~~~~~~~~~W~~~~~~~iG~~G---W~~f~~vfa~~~GvLY~i~~ 148 (229)
T PF14517_consen 102 KLYRHPRPTNGSDNWIGGSGKKIGGTG---WNDFDAVFAGPNGVLYAITP 148 (229)
T ss_dssp EEEEES---STT--HHH-HSEEEE-SS---GGGEEEEEE-TTS-EEEEET
T ss_pred ceeeccCCCccCcchhhccceecccCC---CccceEEEeCCCccEEEEcC
Confidence 899987755310 123332222 34467788899999998876
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.09 E-value=45 Score=34.46 Aligned_cols=164 Identities=16% Similarity=0.109 Sum_probs=94.0
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCC-CCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDE-YSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g-~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
...+++|.++.+.+...+|+|.+|..- + .. . -...+.+-+.- ...+++.+..+...||- +... ..+
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~-~~~~--~-~~t~t~lHWH~---~~V~~L~fS~~G~~LlS--GG~E----~VL 275 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDF-GSSD--D-SETCTLLHWHH---DEVNSLSFSSDGAYLLS--GGRE----GVL 275 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEecc-cccc--c-cccceEEEecc---cccceeEEecCCceEee--cccc----eEE
Confidence 567999998877666668999999743 4 10 0 00011222221 24578999874444444 3221 357
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE-EEEecCCccccc--c-ccccccc
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAK--E-WYKNVFG 206 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~--~-~~~~~~~ 206 (335)
.+|..++++..+.=.+ ....-++.+.||+++|..-...+.|..+..-.-. ...+. .+..+ . ......-
T Consensus 276 v~Wq~~T~~kqfLPRL------gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIs--gi~~~~~~~k~~~~~l 347 (792)
T KOG1963|consen 276 VLWQLETGKKQFLPRL------GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTIS--GIKPPTPSTKTRPQSL 347 (792)
T ss_pred EEEeecCCCccccccc------CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhcc--CccCCCcccccccccc
Confidence 7888887764332112 1234579999999988877777888888763222 11121 11111 0 0111234
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCC
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
+.+++++|.-+..+=+...+.|.-||+-..
T Consensus 348 ~t~~~idpr~~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 348 TTGVSIDPRTNSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred ceeEEEcCCCCceeecCCCceEEEEecccc
Confidence 788999994444444556777877877665
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=85.56 E-value=4.1 Score=24.09 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=27.2
Q ss_pred EEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEE
Q 039428 43 QYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVL 76 (335)
Q Consensus 43 ~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d 76 (335)
.+.+......+++|+++++.++++..++.|..||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3445555678999999999888888899999885
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=85.45 E-value=32 Score=32.24 Aligned_cols=122 Identities=11% Similarity=0.035 Sum_probs=75.0
Q ss_pred EEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEec
Q 039428 42 YQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD 121 (335)
Q Consensus 42 ~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D 121 (335)
+.+.+-.---..+.|++. ...|...++.+|.+||...+.- .. .+..+ ...+.|...+ ..+|.++. .
T Consensus 254 vtl~GHt~~Vs~V~w~d~-~v~yS~SwDHTIk~WDletg~~----~~---~~~~~----ksl~~i~~~~-~~~Ll~~g-s 319 (423)
T KOG0313|consen 254 VTLEGHTEPVSSVVWSDA-TVIYSVSWDHTIKVWDLETGGL----KS---TLTTN----KSLNCISYSP-LSKLLASG-S 319 (423)
T ss_pred EEecccccceeeEEEcCC-CceEeecccceEEEEEeecccc----ee---eeecC----cceeEeeccc-ccceeeec-C
Confidence 334443334478888874 4566777899999999765551 11 11111 2446788886 56666642 2
Q ss_pred CCCCccceEEEEECCCCeEEE-EeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCC
Q 039428 122 VLGNKYSALAAYDLSTWKRLF-LTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEG 184 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g 184 (335)
.. .-+..|||+++.-.. .-.+.+ . .+....+.-.|.. .++++.+..+.+..+|-..
T Consensus 320 sd----r~irl~DPR~~~gs~v~~s~~g--H-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 320 SD----RHIRLWDPRTGDGSVVSQSLIG--H-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred CC----CceeecCCCCCCCceeEEeeec--c-hhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 21 238889998764221 112211 1 3566777778865 6899999988888888653
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.00 E-value=25 Score=34.56 Aligned_cols=100 Identities=11% Similarity=0.194 Sum_probs=62.2
Q ss_pred eeeEEcCCCCEEEEE--ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 52 ETAKWDDVGRRFLVS--FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 52 egia~d~~g~~~~~~--~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
..+.|.++|+-|.+. ....++..+|. .+. ++..+++- .-+-+.++| .|++.+. +..++-+ +.
T Consensus 274 hdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~---------~v~df~eg---pRN~~~fnp-~g~ii~l-AGFGNL~-G~ 337 (566)
T KOG2315|consen 274 HDVTWSPSGREFAVVYGFMPAKVTIFNL-RGK---------PVFDFPEG---PRNTAFFNP-HGNIILL-AGFGNLP-GD 337 (566)
T ss_pred eEEEECCCCCEEEEEEecccceEEEEcC-CCC---------EeEeCCCC---CccceEECC-CCCEEEE-eecCCCC-Cc
Confidence 788999999888887 44578888874 565 13334431 236788887 6777664 4444333 56
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS 174 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~ 174 (335)
+-+||....+.+..... ....=....|||..++|-+..
T Consensus 338 mEvwDv~n~K~i~~~~a-------~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 338 MEVWDVPNRKLIAKFKA-------ANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred eEEEeccchhhcccccc-------CCceEEEEcCCCcEEEEEecc
Confidence 88999877555422111 111225567999877776543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.98 E-value=38 Score=32.58 Aligned_cols=165 Identities=15% Similarity=0.044 Sum_probs=93.8
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
--.++++.|....++.+ ..+++.-.||...-.. . -+ +++..-... ...+...++|.+|+|..+..| +
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~-K--~s--p~lst~~Hr-rsV~sAyFSPs~gtl~TT~~D------~ 391 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRG-K--AS--PFLSTLPHR-RSVNSAYFSPSGGTLLTTCQD------N 391 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcC-C--CC--cceeccccc-ceeeeeEEcCCCCceEeeccC------C
Confidence 35789999998877777 6677777777432110 0 00 122211111 346788899988885553333 3
Q ss_pred eEEEEECC----CCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEE-EecCCcccccccccc
Q 039428 129 ALAAYDLS----TWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLS-IIRSPLFTAKEWYKN 203 (335)
Q Consensus 129 ~v~~~d~~----~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~-~~~~~~~~~~~~~~~ 203 (335)
.|.+||-. --+....+.-+.....--.|--.+.||+-++++...+...|=+||..|+... .+.++...
T Consensus 392 ~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~------- 464 (498)
T KOG4328|consen 392 EIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS------- 464 (498)
T ss_pred ceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-------
Confidence 59999873 1111111111100001233455778998887777778888999999987633 12222111
Q ss_pred ccccCeEEEccCCe-EEEEECCCCEEEEEeCC
Q 039428 204 VFGLNGIVYHPDGF-LIVIHMCSGNLFKIDIR 234 (335)
Q Consensus 204 ~~~p~Gia~~~dg~-Lyvad~~~~~v~~~d~~ 234 (335)
.-|-=+.+.|-+. +.......|+||+|.-+
T Consensus 465 -tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 465 -TIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred -ccccceeecccccceeccCCccceEEEEecC
Confidence 1133456777664 55555567888887544
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.49 E-value=45 Score=33.11 Aligned_cols=172 Identities=10% Similarity=0.091 Sum_probs=99.9
Q ss_pred eeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCC------cceeee---------------eEEeecCCcCC--------C
Q 039428 52 ETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSP------GTVLEE---------------VKLVKEDDVVG--------N 101 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~------~~v~~~---------------~~~~~~~~~~~--------~ 101 (335)
..|.+++||+.++.+ ....+|.++|..+-... .+++.- -+++.+....| .
T Consensus 55 t~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~ 134 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPK 134 (703)
T ss_pred ceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCc
Confidence 578899999877777 77788888875422100 000100 00011111111 0
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d 181 (335)
....|..+..+-.||++.+ + ..|++++++-|..+ .++... ....|-+.+.+-..+..+.+..|.|--||
T Consensus 135 ~GRDm~y~~~scDly~~gs--g----~evYRlNLEqGrfL--~P~~~~---~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 135 FGRDMKYHKPSCDLYLVGS--G----SEVYRLNLEQGRFL--NPFETD---SGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred CCccccccCCCccEEEeec--C----cceEEEEccccccc--cccccc---cccceeeeecCccceEEecccCceEEEec
Confidence 1245666654566777422 2 35999999877655 222111 24567788888766888888899999999
Q ss_pred cCCcEEE-EecCC-ccc-cccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 182 VEGQLLS-IIRSP-LFT-AKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 182 ~~g~~~~-~~~~~-~~~-~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
+..+... .+.-. ... .| .......+..|.|+.+| ++-| -+.+|+++.+|+...
T Consensus 204 pR~ksrv~~l~~~~~v~s~p-g~~~~~svTal~F~d~gL~~aV-Gts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHP-GGDAAPSVTALKFRDDGLHVAV-GTSTGSVLIYDLRAS 260 (703)
T ss_pred chhhhhheeeecccccCCCc-cccccCcceEEEecCCceeEEe-eccCCcEEEEEcccC
Confidence 9754322 11110 000 01 11233458899999888 5554 457889999999987
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.48 E-value=42 Score=34.34 Aligned_cols=75 Identities=16% Similarity=0.084 Sum_probs=52.0
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
..-++++|.-.+.++-+.+..|..|++..+| .++.|+...+. -+.+--+.+||.|.+.++.-....+.+++...+
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgK-q~k~FKgs~~~-eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGK-QVKSFKGSRDH-EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccc-eeeeecccccC-CCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 5678999887777788888889999999886 67777632211 234566788998876665332355777776443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.42 E-value=48 Score=33.32 Aligned_cols=157 Identities=10% Similarity=0.072 Sum_probs=96.8
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-.++.++|..-....+..+|.|..|+- +++. .+. -+...+. ....-.+-++.+-+.+ .+|. .+|
T Consensus 16 VKsVd~HPtePw~la~LynG~V~IWny-etqt---mVk---sfeV~~~---PvRa~kfiaRknWiv~-GsDD-----~~I 79 (794)
T KOG0276|consen 16 VKSVDFHPTEPWILAALYNGDVQIWNY-ETQT---MVK---SFEVSEV---PVRAAKFIARKNWIVT-GSDD-----MQI 79 (794)
T ss_pred eeeeecCCCCceEEEeeecCeeEEEec-ccce---eee---eeeeccc---chhhheeeeccceEEE-ecCC-----ceE
Confidence 467888888776666688999999984 3441 111 1111111 1122233333443433 2333 469
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeE
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
.+|+..+++.+..... . ..+...+++.|.-=.+++.+..-.|-.+|-+++.... ..|.. .-....-+
T Consensus 80 rVfnynt~ekV~~FeA--H---~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~---qtfeG-----H~HyVMqv 146 (794)
T KOG0276|consen 80 RVFNYNTGEKVKTFEA--H---SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACE---QTFEG-----HEHYVMQV 146 (794)
T ss_pred EEEecccceeeEEeec--c---ccceeeeeecCCCCeEEecCCccEEEEeeccCceeee---eEEcC-----cceEEEEE
Confidence 9999998876533221 1 3566789999988777787777778788877765431 22322 12236789
Q ss_pred EEccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 211 VYHPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 211 a~~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
++.|.. +-|++.+-++.|.+......
T Consensus 147 ~fnPkD~ntFaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 147 AFNPKDPNTFASASLDRTVKVWSLGSP 173 (794)
T ss_pred EecCCCccceeeeeccccEEEEEcCCC
Confidence 999965 89999888887777666554
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=84.39 E-value=35 Score=31.80 Aligned_cols=148 Identities=20% Similarity=0.177 Sum_probs=78.9
Q ss_pred CcceeeeEEcCCCCEEEEE-ec-C---CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEe-CCCCeEEEEEec
Q 039428 48 SFLCETAKWDDVGRRFLVS-FL-D---GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVD-RPRNRLLVAFTD 121 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~-~~-~---~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d-~~~g~l~v~~~D 121 (335)
..+-..+.|.++++.+++. .. . -.+..+|...+.. +.......+... .....+.+- ++++.++.. .+
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~-----~~~~~e~~~~Wv-~~~~~~~~~~~~~~~~l~~-s~ 255 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET-----RVVLEETSDGWV-DVYDPPHFLGPDGNEFLWI-SE 255 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC-----EEEEEEESSSSS-SSSSEEEE-TTTSSEEEEE-EE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce-----eEEEEecCCcce-eeecccccccCCCCEEEEE-EE
Confidence 4455788999998844444 32 2 2577888654442 110001112211 122344443 334443333 33
Q ss_pred CCCCccceEEEEECCCCeEEEEeecCCCccCCCCC-CceeECCCC-cEEEEeCC----CCeEEEEccC-CcEEEEecCCc
Q 039428 122 VLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTA-DDIAVDAEG-NAYVTDVV----SSKIWKVGVE-GQLLSIIRSPL 194 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p-~~~~vd~~G-~lyV~d~~----~~~I~~~d~~-g~~~~~~~~~~ 194 (335)
..+. ..|+.++.+++........ .... .-+.+|+++ .+|++... ...||+++.+ ++..+.+
T Consensus 256 ~~G~--~hly~~~~~~~~~~~lT~G------~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~L---- 323 (353)
T PF00930_consen 256 RDGY--RHLYLYDLDGGKPRQLTSG------DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCL---- 323 (353)
T ss_dssp TTSS--EEEEEEETTSSEEEESS-S------SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEES----
T ss_pred cCCC--cEEEEEcccccceeccccC------ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEec----
Confidence 3233 4699999998875422111 1222 236778875 68887554 5689999999 7666533
Q ss_pred cccccccccccccC-eEEEccCCeEEEE
Q 039428 195 FTAKEWYKNVFGLN-GIVYHPDGFLIVI 221 (335)
Q Consensus 195 ~~~~~~~~~~~~p~-Gia~~~dg~Lyva 221 (335)
+. ..+.+ .+.++|+|..|+-
T Consensus 324 -T~------~~~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 324 -TC------EDGDHYSASFSPDGKYYVD 344 (353)
T ss_dssp -ST------TSSTTEEEEE-TTSSEEEE
T ss_pred -cC------CCCCceEEEECCCCCEEEE
Confidence 21 12244 8999999955543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.27 E-value=47 Score=33.15 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=66.5
Q ss_pred CCCCCceeECCCCcEEEE---eCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEE
Q 039428 153 KSTADDIAVDAEGNAYVT---DVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNL 228 (335)
Q Consensus 153 ~~~p~~~~vd~~G~lyV~---d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v 228 (335)
+...+.+.-..+|..+.+ ++.+.+|+..+..-...+ .-|.. ....+.-+.|.|.- +|+|+...+ |
T Consensus 521 ~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ----~PF~k-----skG~vq~v~FHPs~p~lfVaTq~~--v 589 (733)
T KOG0650|consen 521 PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ----SPFRK-----SKGLVQRVKFHPSKPYLFVATQRS--V 589 (733)
T ss_pred CCccceeeeecCCceEEEeccCCCcceEEEEeccccccc----Cchhh-----cCCceeEEEecCCCceEEEEeccc--e
Confidence 345567888888875554 344566666665432222 12321 12347888999987 999996554 5
Q ss_pred EEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEEEEcC
Q 039428 229 FKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARLVESS 281 (335)
Q Consensus 229 ~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~~~ 281 (335)
..+|+.... .+..+ +.| ....+.|++++.| +|++.++ .+.+.+++.+
T Consensus 590 RiYdL~kqe-lvKkL-~tg---~kwiS~msihp~GDnli~gs~-d~k~~WfDld 637 (733)
T KOG0650|consen 590 RIYDLSKQE-LVKKL-LTG---SKWISSMSIHPNGDNLILGSY-DKKMCWFDLD 637 (733)
T ss_pred EEEehhHHH-HHHHH-hcC---CeeeeeeeecCCCCeEEEecC-CCeeEEEEcc
Confidence 566766541 11111 123 1336789999988 5666655 3667777765
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=83.93 E-value=14 Score=34.33 Aligned_cols=142 Identities=18% Similarity=0.161 Sum_probs=82.3
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeEEEE-eecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEe
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFL-TQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSII 190 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~ 190 (335)
..++.|. ... + +.|.+||.++|+.+.. +.- -...-++.|. + ++.|+.+....|.++|.+......+
T Consensus 246 d~rviis--GSS-D--sTvrvWDv~tge~l~tlihH------ceaVLhlrf~-n-g~mvtcSkDrsiaVWdm~sps~it~ 312 (499)
T KOG0281|consen 246 DERVIVS--GSS-D--STVRVWDVNTGEPLNTLIHH------CEAVLHLRFS-N-GYMVTCSKDRSIAVWDMASPTDITL 312 (499)
T ss_pred cceEEEe--cCC-C--ceEEEEeccCCchhhHHhhh------cceeEEEEEe-C-CEEEEecCCceeEEEeccCchHHHH
Confidence 4567773 221 2 5699999999976521 111 0122245553 3 3777878888888888764321111
Q ss_pred cCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc-CCCcEEEEe
Q 039428 191 RSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL-SPTKLVVAG 269 (335)
Q Consensus 191 ~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d-~~g~l~va~ 269 (335)
.. .+. +.....|-+-++ ..++|+.++...|...+..+.. .++.+. | . -.|+|-- =.|++.|++
T Consensus 313 rr-VLv-----GHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e-fvRtl~--g-H----kRGIAClQYr~rlvVSG 376 (499)
T KOG0281|consen 313 RR-VLV-----GHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE-FVRTLN--G-H----KRGIACLQYRDRLVVSG 376 (499)
T ss_pred HH-HHh-----hhhhheeeeccc--cceEEEecCCceEEEEecccee-eehhhh--c-c----cccceehhccCeEEEec
Confidence 00 000 122336666666 3477888888888888888753 444333 3 2 3577754 247899987
Q ss_pred cCCCeEEEEEcCC
Q 039428 270 NPYPSARLVESSD 282 (335)
Q Consensus 270 ~~~~~~~v~~~~~ 282 (335)
...+.+++.+..-
T Consensus 377 SSDntIRlwdi~~ 389 (499)
T KOG0281|consen 377 SSDNTIRLWDIEC 389 (499)
T ss_pred CCCceEEEEeccc
Confidence 7667777776543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.06 E-value=15 Score=37.82 Aligned_cols=116 Identities=10% Similarity=0.086 Sum_probs=74.6
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEE-ecCCCCccce
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAF-TDVLGNKYSA 129 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~-~D~~~~~~~~ 129 (335)
-.+++|..+|..++.+.+.+-+.+|...+++ ++++ |.+. ....++.+++ ++.+|... +| ++
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--------kqfL--PRLg-s~I~~i~vS~-ds~~~sl~~~D------Nq 315 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGK--------KQFL--PRLG-SPILHIVVSP-DSDLYSLVLED------NQ 315 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCC--------cccc--cccC-CeeEEEEEcC-CCCeEEEEecC------ce
Confidence 3588999999888888888889999754443 1354 4432 3457999997 67777654 33 35
Q ss_pred EEEEECCCCeEEEEee-cCCC-----ccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC
Q 039428 130 LAAYDLSTWKRLFLTQ-LSGK-----SEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG 184 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~-~~~~-----~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g 184 (335)
|..+...+.+....+. +..+ ......+.++.+||.=+.-+-....+.|+-+|+-.
T Consensus 316 I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 316 IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred EEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence 7777665544432222 1111 11246778899999644555567788999998754
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=82.88 E-value=12 Score=35.29 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=67.7
Q ss_pred CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECC--------C-----Ce--EEEEeecCCCccCCCCCCceeECCCC
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLS--------T-----WK--RLFLTQLSGKSEEKSTADDIAVDAEG 165 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~--------~-----~~--~~~~~~~~~~~~~~~~p~~~~vd~~G 165 (335)
...+.+.+++ +|.+.+...|. +.|+.|-.. + .+ ++... +.+. ..-+.+++-.+++
T Consensus 66 ~aVN~vRf~p-~gelLASg~D~-----g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~-lr~h---~~diydL~Ws~d~ 135 (434)
T KOG1009|consen 66 RAVNVVRFSP-DGELLASGGDG-----GEVFLWKQGDVRIFDADTEADLNKEKWVVKKV-LRGH---RDDIYDLAWSPDS 135 (434)
T ss_pred ceeEEEEEcC-CcCeeeecCCC-----ceEEEEEecCcCCccccchhhhCccceEEEEE-eccc---ccchhhhhccCCC
Confidence 4578999997 88898865443 235555433 3 11 11111 1111 3457789999999
Q ss_pred cEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEe
Q 039428 166 NAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKID 232 (335)
Q Consensus 166 ~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d 232 (335)
+..++.+..+.++.+|.. |.....+.+ ....++|+|+||-+.-+.+.+...+.+.+.
T Consensus 136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~d----------h~~yvqgvawDpl~qyv~s~s~dr~~~~~~ 193 (434)
T KOG1009|consen 136 NFLVSGSVDNSVRLWDVHAGQLLAILDD----------HEHYVQGVAWDPLNQYVASKSSDRHPEGFS 193 (434)
T ss_pred ceeeeeeccceEEEEEeccceeEeeccc----------cccccceeecchhhhhhhhhccCcccceee
Confidence 999999998999999876 444443221 123488999998764444433333333333
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.64 E-value=6.9 Score=37.51 Aligned_cols=194 Identities=12% Similarity=0.080 Sum_probs=115.9
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.+.|..+.+..+|+.++.....|-|.-+|-.+++ +..|+.+ - .....+.+-. +..+|++ +..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~----L~~Ei~v---~----Etv~Dv~~LH-neq~~AV-AQK----- 190 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK----LHFEINV---M----ETVRDVTFLH-NEQFFAV-AQK----- 190 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccce----eeeeeeh---h----hhhhhhhhhc-chHHHHh-hhh-----
Confidence 4568889999999999998778889988854443 1111111 1 1334455442 4445543 221
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
.-+++||-.+-++..... ....+-+.|-|-..+.++-+.+|-+.-.|-. |+.+..+ .+. ...
T Consensus 191 ~y~yvYD~~GtElHClk~-------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~----~t~------~G~ 253 (545)
T KOG1272|consen 191 KYVYVYDNNGTELHCLKR-------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI----RTG------AGR 253 (545)
T ss_pred ceEEEecCCCcEEeehhh-------cCchhhhcccchhheeeecccCCceEEEeechhhhhHHH----Hcc------CCc
Confidence 358889877666653321 3344557777888888888888877777754 4433211 111 011
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
..-++-.|-+.+.-.-..+|.|.-..++.....+..+.-.+ ...++|+|++|++.++......+.|.+..
T Consensus 254 ~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g-----~V~siAv~~~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 254 TDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRG-----PVSSIAVDRGGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred cchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCC-----CcceEEECCCCcEEeecccccceeEeeec
Confidence 34455555555554555678888777776531223333222 35799999999988886555667777654
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=82.37 E-value=68 Score=33.58 Aligned_cols=158 Identities=13% Similarity=0.149 Sum_probs=83.7
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCcee---ECCCCcEEEEeCCCCeEEE
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIA---VDAEGNAYVTDVVSSKIWK 179 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~---vd~~G~lyV~d~~~~~I~~ 179 (335)
|.-+-++..+..++. .|.... +.|+++|++.|+++.........+-..+.++=. .++. ..|+. -..+++++
T Consensus 483 P~k~mL~~~d~~mil--~~~~~~--~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e-~tflG-ls~n~lfr 556 (794)
T PF08553_consen 483 PKKAMLHDQDRNMIL--LDPNNP--NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNE-QTFLG-LSDNSLFR 556 (794)
T ss_pred cchhhhhccccceEe--ecCCCC--CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCC-ceEEE-ECCCceEE
Confidence 444444433444544 233221 569999999999874444321110001111111 1122 36665 44578999
Q ss_pred EccC--CcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeE
Q 039428 180 VGVE--GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGL 257 (335)
Q Consensus 180 ~d~~--g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGi 257 (335)
+||. |..+..-....|. ....-..+|-+.+|++-|+. ..|.|.-||.-+.. ....++.-|+. .-||
T Consensus 557 iDpR~~~~k~v~~~~k~Y~------~~~~Fs~~aTt~~G~iavgs-~~G~IRLyd~~g~~-AKT~lp~lG~p----I~~i 624 (794)
T PF08553_consen 557 IDPRLSGNKLVDSQSKQYS------SKNNFSCFATTEDGYIAVGS-NKGDIRLYDRLGKR-AKTALPGLGDP----IIGI 624 (794)
T ss_pred eccCCCCCceeeccccccc------cCCCceEEEecCCceEEEEe-CCCcEEeecccchh-hhhcCCCCCCC----eeEE
Confidence 9986 3222110111222 22345678888899998886 56778888755431 22334322311 4789
Q ss_pred EEcCCCcEEEEecCCCeEEEEE
Q 039428 258 ALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 258 a~d~~g~l~va~~~~~~~~v~~ 279 (335)
.+..||++.+|--. .-+.+++
T Consensus 625 Dvt~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 625 DVTADGKWILATCK-TYLLLID 645 (794)
T ss_pred EecCCCcEEEEeec-ceEEEEE
Confidence 99999997777321 3355544
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=82.21 E-value=69 Score=33.52 Aligned_cols=163 Identities=16% Similarity=0.050 Sum_probs=84.2
Q ss_pred CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC------CCcceEEEeC----------------CCCeEEE
Q 039428 60 GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG------NATMGIAVDR----------------PRNRLLV 117 (335)
Q Consensus 60 g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~------~~p~Gi~~d~----------------~~g~l~v 117 (335)
++.+|++..++.|+.+|..+|+. .|.-.+.... ..+.|+++.. .+++||+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~--------lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~ 265 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKE--------KWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIIL 265 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcE--------EEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEE
Confidence 45666666678999999776761 1322222110 1234555431 2458888
Q ss_pred EEecCCCCccceEEEEECCCCeEEEEeecCCC----------ccCCCCCC-ceeECCCCcEEEEeC---------CCCeE
Q 039428 118 AFTDVLGNKYSALAAYDLSTWKRLFLTQLSGK----------SEEKSTAD-DIAVDAEGNAYVTDV---------VSSKI 177 (335)
Q Consensus 118 ~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~----------~~~~~~p~-~~~vd~~G~lyV~d~---------~~~~I 177 (335)
.+.| .+|+.+|.++|+..+.....+. ..+..... .-.+ -+|.+||..+ ..+.|
T Consensus 266 ~T~D------g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 266 PTSD------ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-AGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred ecCC------CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEE-ECCEEEEEecccccccccCCCcEE
Confidence 6444 3599999999988754321110 00000011 1122 1467887632 25789
Q ss_pred EEEccC-CcEEEEecC--Ccccc---cccccccccc---CeEEEccCC-eEEEEE-----------------CCCCEEEE
Q 039428 178 WKVGVE-GQLLSIIRS--PLFTA---KEWYKNVFGL---NGIVYHPDG-FLIVIH-----------------MCSGNLFK 230 (335)
Q Consensus 178 ~~~d~~-g~~~~~~~~--~~~~~---~~~~~~~~~p---~Gia~~~dg-~Lyvad-----------------~~~~~v~~ 230 (335)
+-+|.+ |+....+.. +.... ++......++ ..+++|++. .+|+.- .-++.|..
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 999986 555443321 11110 0100011123 456888765 666622 12467899
Q ss_pred EeCCCCc
Q 039428 231 IDIRKEE 237 (335)
Q Consensus 231 ~d~~~~~ 237 (335)
+|+++++
T Consensus 419 LD~~TGk 425 (764)
T TIGR03074 419 LDATTGK 425 (764)
T ss_pred EeCCCCc
Confidence 9998874
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.70 E-value=6.4 Score=38.38 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=49.5
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
.+|+++|+|||....+-+.++-+..|+-+..+ + +.+-- ..+++---+.+.|||+++|++....=+.|....+
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e--L--lg~mk-SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQE--L--LGVMK-SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHH--H--HHHHH-hhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 69999999999777777788888888887751 1 11111 1245566788899999998876545455555443
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=80.56 E-value=48 Score=30.65 Aligned_cols=67 Identities=13% Similarity=0.215 Sum_probs=34.8
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCe--EEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-----------CCeEE
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWK--RLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-----------SSKIW 178 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-----------~~~I~ 178 (335)
++.|||+.. ... ..++++|++... -....+++ ..+.... .++ --++.|||.... ...++
T Consensus 17 ~~~vyv~GG-~~~---~~~~~~d~~~~~~~W~~l~~~p--~~~R~~~-~~~-~~~~~iYv~GG~~~~~~~~~~~~~~~v~ 88 (346)
T TIGR03547 17 GDKVYVGLG-SAG---TSWYKLDLKKPSKGWQKIADFP--GGPRNQA-VAA-AIDGKLYVFGGIGKANSEGSPQVFDDVY 88 (346)
T ss_pred CCEEEEEcc-ccC---CeeEEEECCCCCCCceECCCCC--CCCcccc-eEE-EECCEEEEEeCCCCCCCCCcceecccEE
Confidence 689999632 211 358899974322 22112221 1101122 222 235789997643 14688
Q ss_pred EEccCCcE
Q 039428 179 KVGVEGQL 186 (335)
Q Consensus 179 ~~d~~g~~ 186 (335)
++|+....
T Consensus 89 ~Yd~~~~~ 96 (346)
T TIGR03547 89 RYDPKKNS 96 (346)
T ss_pred EEECCCCE
Confidence 89987654
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.31 E-value=23 Score=36.10 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=68.8
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEcc
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGV 182 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~ 182 (335)
...|++||..+.+..+..|. .|.+||.++++........ ....+-+--+..||.|...++......+-.+|-
T Consensus 599 lYDm~Vdp~~k~v~t~cQDr------nirif~i~sgKq~k~FKgs--~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDR------NIRIFDIESGKQVKSFKGS--RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred EEEeeeCCCcceEEEEeccc------ceEEEeccccceeeeeccc--ccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence 57888888555555443332 4999999988766332221 111355667889999944444445566777775
Q ss_pred CCcE-E-EEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCC
Q 039428 183 EGQL-L-SIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 183 ~g~~-~-~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~ 235 (335)
-... . +.++. .....|+.|.+|=.=+++-++++.|++..+-.
T Consensus 671 ~sgEcvA~m~GH-----------sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 671 VSGECVAQMTGH-----------SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccchhhhhhcCc-----------chheeeeeecccchhheeecCCceEEEEECch
Confidence 4322 1 21221 12378999998875455666788777665543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} Length = 334 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 3e-44
Identities = 43/305 (14%), Positives = 89/305 (29%), Gaps = 35/305 (11%)
Query: 40 HVYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV 99
+ E +D + F S L G ++ V + + + +
Sbjct: 4 DQIDVKVKNLTPEDTIYDRTRQVFYQSNLYKG--RIEVYNPKTQSHFNVVIDGASSNGDG 61
Query: 100 GNATMGIAV--DRPRNRLLVAF-----TDVLGNKYSA---LAAYDL---STWKRLFLTQL 146
G+++ RL + +++L K ++
Sbjct: 62 EQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNF 121
Query: 147 SGKSEEKSTAD--------DIAVDAEGNAYVTD-VVSSKIWKVGVEGQLLSIIRSPLFTA 197
+E A D +GN+YV + I +V +G+ +S
Sbjct: 122 EKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS----TFAWE 177
Query: 198 KEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRG--GSSLSLGD 255
G +GI + P ++ L D+ K + +++ G G+
Sbjct: 178 SGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEK 237
Query: 256 GLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHR-----VATAATVKDGR 310
+ + + V+ G P A S D W++A++ VA +
Sbjct: 238 IVTVPVGNESVLVGARAPYAISFRSWDNWKSANIKKTKRSELQNSGFTAVADYYQGSEQG 297
Query: 311 VYLSH 315
+Y
Sbjct: 298 LYAVS 302
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 5e-08
Identities = 46/343 (13%), Positives = 102/343 (29%), Gaps = 30/343 (8%)
Query: 3 LSLCFTKTLLFFFIISAIPIAYIISIELAIAMAKPATHVYQYHSPSFLCETAKWDDVGRR 62
+L L F ++ + + E + G
Sbjct: 5 TALTLLGMGLALFDRQKSSFQTRFNVHREVT-PVELPNCNLVKGIDNGSEDLEILPNGLA 63
Query: 63 FLVS---------FLDGGVGQVLVPDEYSPGTVLEEVKLVKED-DVVGNATMGIAVDRPR 112
F+ S F G++L+ D + E++++ D+ GI+
Sbjct: 64 FISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD 123
Query: 113 NRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV 172
+ + S + + ++ L + + + + +DI + Y T+
Sbjct: 124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATND 183
Query: 173 VSSKIWKVGVEGQLLS-----IIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSG 226
+ L + + + NGI PDG ++ + + +
Sbjct: 184 HYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAH 243
Query: 227 NLFKIDIRKEEEEVKL--IELRGGS-SLSL----GDGLALLSPTKLVV----AGNPYPSA 275
+ + L + ++S+ GD P + + A NP S
Sbjct: 244 KIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSE 303
Query: 276 --RLVESSDGWETASVVAKFNGPTHRVATAATVKDGRVYLSHL 316
R+ + +VV NG + +T A V G++ + +
Sbjct: 304 VLRIQDILSEEPKVTVVYAENGTVLQGSTVAAVYKGKLLIGTV 346
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 8e-08
Identities = 47/283 (16%), Positives = 77/283 (27%), Gaps = 40/283 (14%)
Query: 37 PATHVYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKED 96
PA + + +FL E G F+ + G + + +P +
Sbjct: 21 PAKIITSFPVNTFL-ENLASAPDGTIFVTNHEVGEIVSI------TPDGNQQIHA----- 68
Query: 97 DVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTA 156
V G+A L+ ++ + + L + G E T
Sbjct: 69 -TVEGKVSGLAFT-SNGDLVAT-------------GWNADSIPVVSLVKSDGTVETLLTL 113
Query: 157 ------DDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRS-PLFTAKEWYKNVFGLNG 209
+ I ++ D IW + V SI P+ NG
Sbjct: 114 PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 173
Query: 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAG 269
+ + L V + L +I + + K E + D A L A
Sbjct: 174 LKRFGNF-LYVSNTEKMLLLRIPV---DSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGAT 229
Query: 270 NPYPS-ARLVESSDGWETASVVAKFNGPTHRVATAATVKDGRV 311
+ Y S R+ A G T VA T D
Sbjct: 230 HIYNSVVRIAPDRSTTIIAQAEQGVIGSTA-VAFGQTEGDCTA 271
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 30/249 (12%), Positives = 70/249 (28%), Gaps = 38/249 (15%)
Query: 67 FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126
F + G ++ S E L + GI + T + G++
Sbjct: 77 FTENGANKIGK---LSKKGGFTEYPL----PQPDSGPYGITEG-LNGDIWF--TQLNGDR 126
Query: 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL 186
+ + G S I + ++ + T+ ++ I ++ G+L
Sbjct: 127 ---IGKLTADGTIYEYDLPNKG-----SYPAFITLGSDNALWFTENQNNSIGRITNTGKL 178
Query: 187 LSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELR 246
GI DG L + + + +I E + E
Sbjct: 179 EEYPLPTNAA---------APVGITSGNDGALWFVEIMGNKIGRITTTGE-----ISEYD 224
Query: 247 GGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG-WETASVVAKFNGPTHRVATAAT 305
+ + + +++ + ++D + + + P H +
Sbjct: 225 IPTPNARPHAITAGKNSEIWFT-EWGANQIGRITNDNTIQEYQLQTENAEP-HGITFGK- 281
Query: 306 VKDGRVYLS 314
DG V+ +
Sbjct: 282 --DGSVWFA 288
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 29/208 (13%)
Query: 105 GIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE 164
GI ++ T NK +++ D S + F + + V +
Sbjct: 24 GITSS-EDGKVWF--TQHKANK---ISSLDQSGRIKEFEVPTPD-----AKVMCLIVSSL 72
Query: 165 GNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC 224
G+ + T+ ++KI K+ +G + G GI +G + +
Sbjct: 73 GDIWFTENGANKIGKLSKKGGFTEYPLPQPDS---------GPYGITEGLNGDIWFTQLN 123
Query: 225 SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGW 284
+ K+ E L + S + L S L N S + ++
Sbjct: 124 GDRIGKLTADGTIYEYDL-----PNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKL 178
Query: 285 ETASVVAKFNGPTHRVATAATVKDGRVY 312
E + P + + DG ++
Sbjct: 179 EEYPLPTNAAAP-VGITSGN---DGALW 202
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 9/79 (11%), Positives = 23/79 (29%), Gaps = 9/79 (11%)
Query: 154 STADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYH 213
S I +G + T ++KI + G++ + ++
Sbjct: 20 SGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDA---------KVMCLIVS 70
Query: 214 PDGFLIVIHMCSGNLFKID 232
G + + + K+
Sbjct: 71 SLGDIWFTENGANKIGKLS 89
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 15/155 (9%), Positives = 43/155 (27%), Gaps = 18/155 (11%)
Query: 158 DIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGF 217
I V +G ++T ++ I + ++G++ + + DG
Sbjct: 19 GITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDA---------KVMCLTISSDGE 69
Query: 218 LIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARL 277
+ + + +I + +E + S G+ +
Sbjct: 70 VWFTENAANKIGRITKKGIIKEYT-----LPNPDSAPYGITEGPNGDIWFTEMNGNRIGR 124
Query: 278 VESSDGWETASVVAKFNGPTHRVATAATVKDGRVY 312
+ + K + P + + D ++
Sbjct: 125 ITDDGKIREYELPNKGSYP-SFITLGS---DNALW 155
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 22/166 (13%), Positives = 51/166 (30%), Gaps = 27/166 (16%)
Query: 67 FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126
F + ++ + +++E L +A GI P + ++ GN+
Sbjct: 72 FTENAANKIGR---ITKKGIIKEYTL----PNPDSAPYGITEG-PNGDIWFT--EMNGNR 121
Query: 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL 186
+ R + G S I + ++ + T+ ++ I ++ G +
Sbjct: 122 ---IGRITDDGKIREYELPNKG-----SYPSFITLGSDNALWFTENQNNAIGRITESGDI 173
Query: 187 LSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKID 232
+ G GI D L + + + +I
Sbjct: 174 TEFKIPTPAS---------GPVGITKGNDDALWFVEIIGNKIGRIT 210
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Length = 433 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 4e-04
Identities = 32/223 (14%), Positives = 61/223 (27%), Gaps = 26/223 (11%)
Query: 91 KLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA-LAAYDLSTWKRLFLTQLSGK 149
D+ G + + D R+ + + N S ++ D T + T G
Sbjct: 202 AYKATVDLTGKWSKILLYDPIRDLVYCS------NWISEDISVIDRKTKLEIRKTDKIGL 255
Query: 150 SEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208
+ + +G Y+ +S G L I +
Sbjct: 256 PR------GLLLSKDGKELYIAQFSASNQES---GGGRLGIYSMDKEKLIDTIGPPGNKR 306
Query: 209 GIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVV 267
IV + V MC + D+++ ++ K I + + +AL K +
Sbjct: 307 HIVSGNTENKIYVSDMCCSKIEVYDLKE-KKVQKSIPVFDKP-----NTIALSPDGKYLY 360
Query: 268 AGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVKDGR 310
P+ V + T V + G
Sbjct: 361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV--KEFWEAGN 401
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 6e-04
Identities = 19/133 (14%), Positives = 47/133 (35%), Gaps = 17/133 (12%)
Query: 105 GIAVDRPRNRLLVA---------FTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKST 155
G+A+D +N L++ + Y + L + + + + S
Sbjct: 28 GVALD-SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG 86
Query: 156 AD------DIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL-N 208
+ +++D +GN +VTDV +++K+ + ++ +N F
Sbjct: 87 KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT 146
Query: 209 GIVYHPDGFLIVI 221
+ P + +
Sbjct: 147 DVAVEPSTGAVFV 159
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 7e-04
Identities = 32/182 (17%), Positives = 61/182 (33%), Gaps = 28/182 (15%)
Query: 60 GRRFLVSFLDGGVGQVLVPDEYSPGTV----LEEVKLVKEDDVVGNATMGIAVDRPRNRL 115
R LV D V + + +KL G + G+A+D RL
Sbjct: 142 QPRELV--ADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL 199
Query: 116 LVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVS 174
N L D + K L + ++ +I++D A++TD +
Sbjct: 200 YTT------NADGELITIDTADNKIL-SRKKLLDDGKEHFFINISLDTARQRAFITDSKA 252
Query: 175 SKIWKV-GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKID 232
+++ V G +L+ + ++++P V H +G + ID
Sbjct: 253 AEVLVVDTRNGNILAKV------------AAPESLAVLFNPARNEAYVTHRQAGKVSVID 300
Query: 233 IR 234
+
Sbjct: 301 AK 302
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 335 | |||
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.97 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.95 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.94 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.92 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.91 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.9 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.9 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.89 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.89 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.89 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.89 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.89 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.88 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.88 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.88 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.88 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.87 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.87 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.87 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.86 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.86 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.86 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.86 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.86 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.85 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.85 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.85 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.84 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.84 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.84 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.84 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.84 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.84 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.83 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.83 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.83 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.83 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.82 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.82 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.82 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.81 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.81 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.81 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.81 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.79 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.79 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.79 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.78 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.78 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.78 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.77 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.77 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.76 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.75 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.75 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.74 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.73 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.72 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.71 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.71 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.71 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.7 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.69 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.69 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.66 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.65 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.65 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.65 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.65 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.65 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.63 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.62 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.61 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.59 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.58 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.58 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.57 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.56 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.55 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.55 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.55 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.55 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.54 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.54 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.54 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.53 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.53 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.53 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.53 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.53 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.53 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 99.5 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.5 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.49 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.49 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.49 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.48 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.45 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.45 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.45 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.45 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.45 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.43 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.43 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.42 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.42 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.39 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.39 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.38 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.38 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.36 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.35 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.35 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.35 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.34 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.34 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.32 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.31 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.28 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.25 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.21 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.21 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.2 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.17 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.16 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.14 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.13 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.12 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.09 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.08 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.08 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.08 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 99.07 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.07 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.06 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.06 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.06 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.03 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.02 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.01 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.98 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.91 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.91 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.91 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.91 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.91 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.88 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.88 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.87 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.87 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.86 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.86 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.86 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.86 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.85 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.84 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.84 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.84 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.84 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.83 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.82 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.82 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.82 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.8 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.79 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.78 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.77 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.77 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.77 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.76 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.76 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.75 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.74 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.73 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.73 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.72 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.71 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.7 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.68 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.67 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.66 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.66 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.66 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.66 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.66 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.66 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.64 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.64 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.64 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.63 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.63 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.62 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.62 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.62 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.6 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 98.6 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.6 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.58 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.58 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.58 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.57 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.56 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.56 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.55 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.55 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.55 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.53 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.53 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.52 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.51 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.51 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.51 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.51 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.51 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.5 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.48 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.47 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.46 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.46 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.46 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.42 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.42 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.4 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.4 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.39 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.39 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.39 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.38 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.37 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.36 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 98.35 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.34 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.33 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.33 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.32 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.31 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.31 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.3 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.3 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.28 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.28 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.26 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.25 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.25 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.21 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 98.2 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 98.2 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.2 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 98.18 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.17 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.16 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.16 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.13 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.13 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.13 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.12 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.11 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 98.11 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.11 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.1 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.09 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 98.08 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.05 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.04 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.04 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.0 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 97.95 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 97.94 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 97.93 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.93 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.89 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.88 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 97.88 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 97.87 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.85 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.8 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 97.79 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.78 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.73 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.72 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 97.66 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.65 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.65 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 97.63 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 97.63 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.62 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 97.59 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 97.58 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.57 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.57 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.55 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.47 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 97.46 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 97.45 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 97.44 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.41 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 97.37 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.37 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 97.36 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 97.34 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.34 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 97.32 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 97.28 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 97.22 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 97.21 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.19 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 97.17 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.05 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 96.98 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 96.91 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.88 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.87 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.86 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.82 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 96.73 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.7 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 96.67 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.63 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.59 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 96.54 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.52 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.5 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 96.31 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 96.3 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.28 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 96.08 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 95.91 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.86 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.68 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.65 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 95.58 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.53 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.14 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.99 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 94.79 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 94.42 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 94.39 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 94.35 | |
| 3a0f_A | 763 | Xyloglucanase; beta-propeller, hydrolase; 2.50A {G | 92.36 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 92.3 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 91.37 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 91.09 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 88.71 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 88.23 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 83.42 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 83.31 |
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=223.98 Aligned_cols=276 Identities=18% Similarity=0.223 Sum_probs=197.8
Q ss_pred ceeEEEcCCCcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcC--C---CCcceEEE---e
Q 039428 39 THVYQYHSPSFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV--G---NATMGIAV---D 109 (335)
Q Consensus 39 ~~~~~~~~~~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~--~---~~p~Gi~~---d 109 (335)
++.|.+++.+.+||+++||+..+++|++ +.+++|.++++.++. .++ + ..++.. + ..+.||.+ |
T Consensus 3 ~~~i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~-----~~~--~-~~~~~s~~g~~~~~~sGl~~~~~D 74 (334)
T 2p9w_A 3 PDQIDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS-----HFN--V-VIDGASSNGDGEQQMSGLSLLTHD 74 (334)
T ss_dssp CSEEEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCC-----EEE--E-CCTTTCCSSCCSEEEEEEEESSSS
T ss_pred CceEEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCe-----EEE--E-ecCCccccCCCcceeeEEEEeccC
Confidence 5789999999999999999987788888 789999999864343 222 2 344432 2 24789999 7
Q ss_pred CCCCeEEEEEecC------CCC---ccceEEEEECC---CCeEEEEeecCCCcc--------CCCCCCceeECCCCcEEE
Q 039428 110 RPRNRLLVAFTDV------LGN---KYSALAAYDLS---TWKRLFLTQLSGKSE--------EKSTADDIAVDAEGNAYV 169 (335)
Q Consensus 110 ~~~g~l~v~~~D~------~~~---~~~~v~~~d~~---~~~~~~~~~~~~~~~--------~~~~p~~~~vd~~G~lyV 169 (335)
+ +++|||+. +. .+. ..+.|++||+. +++.++.+++..... ....+||+++|++||+||
T Consensus 75 ~-~grL~vv~-~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYV 152 (334)
T 2p9w_A 75 N-SKRLFAVM-KNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYV 152 (334)
T ss_dssp S-CCEEEEEE-EETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEE
T ss_pred C-CCcEEEEE-cccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEE
Confidence 7 59999963 32 110 12579999999 788777777643221 235699999999999999
Q ss_pred EeCCC-CeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEecc-
Q 039428 170 TDVVS-SKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELR- 246 (335)
Q Consensus 170 ~d~~~-~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~- 246 (335)
+++.. +.|+|++++|+....+. ..+.......++|||+++||| .|++++. .++|++||++.. ....++..
T Consensus 153 t~s~~~~~I~rV~pdG~~~~~~~----~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~p--v~~~v~~~~ 225 (334)
T 2p9w_A 153 AFALGMPAIARVSADGKTVSTFA----WESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKP--YAWPEPVKI 225 (334)
T ss_dssp EEEESSCEEEEECTTSCCEEEEE----ECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSS--SCCCEECEE
T ss_pred eCCCCCCeEEEEeCCCCEEeeee----ecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCC--cceeecccc
Confidence 99999 99999999998555331 111112346789999999999 6777877 999999999854 22134432
Q ss_pred -CC-cCCCCCCeE-EEcCCCcE-EEEecCCCeEEEEEcCCCcEEEEEeeeecCCC-CCcceEEEE----eCCeEEE-Eec
Q 039428 247 -GG-SSLSLGDGL-ALLSPTKL-VVAGNPYPSARLVESSDGWETASVVAKFNGPT-HRVATAATV----KDGRVYL-SHL 316 (335)
Q Consensus 247 -g~-~~~~~pdGi-a~d~~g~l-~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~-~~~Pt~va~----~~g~lyV-~~~ 316 (335)
|. ..+..|||| +...+|++ +|++.. +..+++++.|+|++++..+.+.++. ...++..++ .+++||+ .+.
T Consensus 226 ~G~~~~~~~~dgilp~~~~G~vllV~~~~-~~~~~l~S~DgW~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~ 304 (334)
T 2p9w_A 226 NGDFGTLSGTEKIVTVPVGNESVLVGARA-PYAISFRSWDNWKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAVSAF 304 (334)
T ss_dssp SSCCCCCTTEEEEEEEEETTEEEEEEEET-TEEEEEECSSTTSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEEECC
T ss_pred cCCcccccCcccccccccCCEEEEEEcCC-CCEEEEECCCCcceeEEeeeecCccccCceeEEEEeccccCCeEEEEeee
Confidence 21 135779996 66677876 777654 5578888888999999998875431 344555555 3799998 777
Q ss_pred cCCCCCcccceeeeee
Q 039428 317 LGLGFPNTKKKHLLVE 332 (335)
Q Consensus 317 ~~~~~~~~~~~~~~~~ 332 (335)
++.+..+.-++||+.+
T Consensus 305 f~~~~~g~r~~f~~~d 320 (334)
T 2p9w_A 305 FDNGAHGGRSDYPLYK 320 (334)
T ss_dssp GGGTTTSCCCCEEEEE
T ss_pred cCCcccCCcceeechh
Confidence 7766665557788764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-25 Score=200.60 Aligned_cols=254 Identities=14% Similarity=0.181 Sum_probs=175.8
Q ss_pred EEEcCCCcceeeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEe
Q 039428 42 YQYHSPSFLCETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFT 120 (335)
Q Consensus 42 ~~~~~~~~~pegia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~ 120 (335)
..+.....++||++|+++ +.+||++..+++|+++|+.++. .. ....+ ..+.++++++ +|++|++.
T Consensus 6 ~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~-----~~---~~~~~----~~~~~i~~~~-dG~l~v~~- 71 (297)
T 3g4e_A 6 CVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ-----VQ---RVTMD----APVSSVALRQ-SGGYVATI- 71 (297)
T ss_dssp EEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-----EE---EEECS----SCEEEEEEBT-TSSEEEEE-
T ss_pred EEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc-----EE---EEeCC----CceEEEEECC-CCCEEEEE-
Confidence 344556678999999996 5566666888999999964343 11 22223 3678999997 78899963
Q ss_pred cCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC-----------CCCeEEEEccCCcEEEE
Q 039428 121 DVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-----------VSSKIWKVGVEGQLLSI 189 (335)
Q Consensus 121 D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-----------~~~~I~~~d~~g~~~~~ 189 (335)
+ ..|++||+++++......... ....+.||++++|++|++|+++. ..+.|++++++++...+
T Consensus 72 ~------~~l~~~d~~~g~~~~~~~~~~-~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~ 144 (297)
T 3g4e_A 72 G------TKFCALNWKEQSAVVLATVDN-DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY 144 (297)
T ss_dssp T------TEEEEEETTTTEEEEEEECCT-TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE
T ss_pred C------CeEEEEECCCCcEEEEEecCC-CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE
Confidence 1 359999999887764433321 12257899999999999999873 34689999998876543
Q ss_pred ecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCC--CCc-eeEEEE-eccCCcCCCCCCeEEEcCCCc
Q 039428 190 IRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIR--KEE-EEVKLI-ELRGGSSLSLGDGLALLSPTK 264 (335)
Q Consensus 190 ~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~--~~~-~~~~~~-~~~g~~~~~~pdGia~d~~g~ 264 (335)
.. ....||||+++||| .||++++.+++|++++.+ .+. ...+.+ .... . ...|+||++|++|+
T Consensus 145 ~~-----------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~-~-~~~p~g~~~d~~G~ 211 (297)
T 3g4e_A 145 FD-----------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK-E-EQIPDGMCIDAEGK 211 (297)
T ss_dssp EE-----------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG-G-GCEEEEEEEBTTSC
T ss_pred ee-----------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC-C-CCCCCeeEECCCCC
Confidence 21 12358999999999 799999999999999874 221 012233 2221 1 24699999999999
Q ss_pred EEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe---CCeEEEEecc-CCCCCcccceeeeeeecC
Q 039428 265 LVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK---DGRVYLSHLL-GLGFPNTKKKHLLVEAVF 335 (335)
Q Consensus 265 l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~---~g~lyV~~~~-~~~~~~~~~~~~~~~~~~ 335 (335)
|||+....+.+.+++...+ +.+..+..|. ..|++++|. .++|||++.. +.. ++++++.|+++++|
T Consensus 212 lwva~~~~~~v~~~d~~tG----~~~~~i~~p~-~~~t~~~f~g~d~~~L~vt~~~~~~~-~~~~~~~p~~G~~f 280 (297)
T 3g4e_A 212 LWVACYNGGRVIRLDPVTG----KRLQTVKLPV-DKTTSCCFGGKNYSEMYVTCARDGMD-PEGLLRQPEAGGIF 280 (297)
T ss_dssp EEEEEETTTEEEEECTTTC----CEEEEEECSS-SBEEEEEEESGGGCEEEEEEBCTTCC-HHHHHHCTTTTCEE
T ss_pred EEEEEcCCCEEEEEcCCCc----eEEEEEECCC-CCceEEEEeCCCCCEEEEEcCCcCCC-hhHccCCCCCceEE
Confidence 9999775566777765434 3344454453 468999995 4789996543 322 22345677777765
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-24 Score=195.13 Aligned_cols=249 Identities=15% Similarity=0.173 Sum_probs=168.2
Q ss_pred CCceeEEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCc----------------CC
Q 039428 37 PATHVYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDV----------------VG 100 (335)
Q Consensus 37 ~~~~~~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~----------------~~ 100 (335)
+.-+.+.+++.-..||+++|+++|+++|++..+++|+++++.++. +.. +...... ..
T Consensus 7 ~~~~~i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-----~~~--~~~~~~~~~~~~~~g~~~~~~~~~~ 79 (322)
T 2fp8_A 7 PILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-----FVD--FAYASPYWNKAFCENSTDAEKRPLC 79 (322)
T ss_dssp ---CEEEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTC-----EEE--EEESCTTCCHHHHTTCCCGGGHHHH
T ss_pred CccceeecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCc-----eEE--EecccccccccccccccchhccccC
Confidence 344567777766789999999999988899888999999854333 221 2211100 01
Q ss_pred CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCC------
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVV------ 173 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~------ 173 (335)
..|.||++++++++|||+ |.. +.|+++|++++++....... .+..+..|+++++|+ +|++||+|..
T Consensus 80 ~~p~gi~~~~~~g~l~v~--d~~----~~i~~~d~~~g~~~~~~~~~-~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~ 152 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIV--DCY----YHLSVVGSEGGHATQLATSV-DGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDR 152 (322)
T ss_dssp CCEEEEEEETTTTEEEEE--ETT----TEEEEECTTCEECEEEESEE-TTEECSCEEEEEECTTTCCEEEEESCSSCCTT
T ss_pred CCCceEEEcCCCCcEEEE--ECC----CCEEEEeCCCCEEEEecccC-CCCcccccceEEEecCCCEEEEECCccccccc
Confidence 368999999547999995 443 34999999877544222211 112367899999999 9999999975
Q ss_pred -----------CCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCc-eeE
Q 039428 174 -----------SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEE-EEV 240 (335)
Q Consensus 174 -----------~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~-~~~ 240 (335)
.++|+++|+++.....+.. ....|+||++++|| .|||+++.+++|+++++++.. +..
T Consensus 153 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~----------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~ 222 (322)
T 2fp8_A 153 GVQQIMDTSDKTGRLIKYDPSTKETTLLLK----------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTA 222 (322)
T ss_dssp CHHHHHHHTCCCEEEEEEETTTTEEEEEEE----------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCE
T ss_pred ccceehcccCCCceEEEEeCCCCEEEEecc----------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCcc
Confidence 3789999997554432211 23459999999998 699999999999999998631 133
Q ss_pred EEEeccCCcCCCCCCeEEEcCCCcEEEEecC--------CCeEEEEEcCCCcEEEEEeeeecCCC---CCcceEEEEeCC
Q 039428 241 KLIELRGGSSLSLGDGLALLSPTKLVVAGNP--------YPSARLVESSDGWETASVVAKFNGPT---HRVATAATVKDG 309 (335)
Q Consensus 241 ~~~~~~g~~~~~~pdGia~d~~g~l~va~~~--------~~~~~v~~~~~~~~~~~~~~~~~~p~---~~~Pt~va~~~g 309 (335)
+.+.. . .. |+||++|++|++||++.. ....+|.+.+.+. +....+..|. ...|+++++.++
T Consensus 223 ~~~~~---~-~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G---~~~~~~~~~~g~~~~~~~~~~~~~g 294 (322)
T 2fp8_A 223 EVLVK---I-PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG---NILEVIPLPPPFAGEHFEQIQEHDG 294 (322)
T ss_dssp EEEEE---C-SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS---CEEEEEECCTTTTTSCCCEEEEETT
T ss_pred ceEEe---C-CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC---CEEEEEECCCCCccccceEEEEeCC
Confidence 33331 1 13 999999999999999763 1123343433332 2233343342 567888888899
Q ss_pred eEEEEecc
Q 039428 310 RVYLSHLL 317 (335)
Q Consensus 310 ~lyV~~~~ 317 (335)
+|||++..
T Consensus 295 ~L~v~~~~ 302 (322)
T 2fp8_A 295 LLYIGTLF 302 (322)
T ss_dssp EEEEECSS
T ss_pred EEEEeecC
Confidence 99997644
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-23 Score=187.28 Aligned_cols=242 Identities=17% Similarity=0.123 Sum_probs=166.1
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
..+||+++|+++|++|+++..+++|+++|+ +++ .. .+...+ ..|+||++++ +|+|||+. ...+.
T Consensus 31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~-~g~-----~~--~~~~~~----~~p~gia~~~-dG~l~vad--~~~~~- 94 (306)
T 2p4o_A 31 NTFLENLASAPDGTIFVTNHEVGEIVSITP-DGN-----QQ--IHATVE----GKVSGLAFTS-NGDLVATG--WNADS- 94 (306)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC-----EE--EEEECS----SEEEEEEECT-TSCEEEEE--ECTTS-
T ss_pred CCCcceEEECCCCCEEEEeCCCCeEEEECC-CCc-----eE--EEEeCC----CCceeEEEcC-CCcEEEEe--ccCCc-
Confidence 368999999999998888888899999985 455 12 133222 3789999997 78899954 32211
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEe-cCCccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSII-RSPLFTAKEWYKNVFG 206 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~-~~~~~~~~~~~~~~~~ 206 (335)
.+|+++|..++++....... ....++++++.+++++|++|+.+++||++|+++....++ ..+.+........+..
T Consensus 95 ~~v~~~d~~~g~~~~~~~~~----~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 95 IPVVSLVKSDGTVETLLTLP----DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp CEEEEEECTTSCEEEEEECT----TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred ceEEEEcCCCCeEEEEEeCC----CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence 25999998888776444431 145688999888889999999999999999985422211 1111110011123457
Q ss_pred cCeEEEccCC-eEEEEECCCCEEEEEeCCC-Cc-eeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 207 LNGIVYHPDG-FLIVIHMCSGNLFKIDIRK-EE-EEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 207 p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~-~~-~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
|||| ++|| +|||+++.+++|++|+++. ++ ...+.+.. +..|+||++|++|++||++...+++.+++.. +
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G 242 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-R 242 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-C
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-C
Confidence 9998 7777 8999999999999999975 21 12233321 2459999999999999998766788877653 3
Q ss_pred cEEEEEeeeecCCCCCcceEEEEe-----CCeEEEEeccCCC
Q 039428 284 WETASVVAKFNGPTHRVATAATVK-----DGRVYLSHLLGLG 320 (335)
Q Consensus 284 ~~~~~~~~~~~~p~~~~Pt~va~~-----~g~lyV~~~~~~~ 320 (335)
+. ..+..+..+ ...|+++++. +++|||++..+..
T Consensus 243 -~~-~~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~~~~~ 281 (306)
T 2p4o_A 243 -ST-TIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNGGMF 281 (306)
T ss_dssp -CE-EEEECGGGT-CTTEEEEEECCSTTTTTEEEEEECTTSS
T ss_pred -CE-EEEeecccc-cCCceEEEEecccCCCCEEEEECCCCcc
Confidence 11 112233333 4669999995 3789997765443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-21 Score=175.75 Aligned_cols=238 Identities=10% Similarity=0.111 Sum_probs=165.6
Q ss_pred CCCceeEEEcCCCcceeeeEEcCCCC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCe
Q 039428 36 KPATHVYQYHSPSFLCETAKWDDVGR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNR 114 (335)
Q Consensus 36 d~~~~~~~~~~~~~~pegia~d~~g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~ 114 (335)
+.....-.+.....+||+++|+++|+ +|+++..+++|+++++. +.. . .+ ..+. ..|.+|++++ +|+
T Consensus 15 ~~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~-~~~-----~--~~-~~~~---~~~~~l~~~~-dg~ 81 (296)
T 3e5z_A 15 PAGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDD-GQL-----S--PE-MHPS---HHQNGHCLNK-QGH 81 (296)
T ss_dssp CTTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETT-SCE-----E--EE-ESSC---SSEEEEEECT-TCC
T ss_pred CCCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECC-CCe-----E--EE-ECCC---CCcceeeECC-CCc
Confidence 33333334445567899999999998 77777888999999954 431 2 13 2222 4689999997 889
Q ss_pred EEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC-----------------CCCeE
Q 039428 115 LLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-----------------VSSKI 177 (335)
Q Consensus 115 l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-----------------~~~~I 177 (335)
+|++. ... ..|.+||+++++........ .......|+++++|++|++|++|+ ..+.|
T Consensus 82 l~v~~--~~~---~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l 155 (296)
T 3e5z_A 82 LIACS--HGL---RRLERQREPGGEWESIADSF-EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWV 155 (296)
T ss_dssp EEEEE--TTT---TEEEEECSTTCCEEEEECEE-TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEE
T ss_pred EEEEe--cCC---CeEEEEcCCCCcEEEEeecc-CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEE
Confidence 99953 322 36999999777765332211 112257899999999999999975 24699
Q ss_pred EEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCcee---EEEEeccCCcCCCCC
Q 039428 178 WKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEE---VKLIELRGGSSLSLG 254 (335)
Q Consensus 178 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~---~~~~~~~g~~~~~~p 254 (335)
++++++++...... ....|+|++++|||.+++++..+++|++++++..+.. .+.+ . . ....|
T Consensus 156 ~~~~~~g~~~~~~~-----------~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~-~--~~~~p 220 (296)
T 3e5z_A 156 FRLAPDGTLSAPIR-----------DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T-V--EPGKT 220 (296)
T ss_dssp EEECTTSCEEEEEC-----------CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C-C--SSSCC
T ss_pred EEECCCCCEEEeec-----------CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e-C--CCCCC
Confidence 99999876544321 1235899999999965599999999999998732102 2333 2 1 13569
Q ss_pred CeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe---CCeEEEEec
Q 039428 255 DGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK---DGRVYLSHL 316 (335)
Q Consensus 255 dGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~---~g~lyV~~~ 316 (335)
+||++|++|++|++.. +++.+++.. + +....+..|.. |+++++. +++|||+..
T Consensus 221 ~~i~~d~~G~l~v~~~--~~v~~~~~~-g----~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 221 DGLRVDAGGLIWASAG--DGVHVLTPD-G----DELGRVLTPQT--TSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp CSEEEBTTSCEEEEET--TEEEEECTT-S----CEEEEEECSSC--CCEEEEESTTSCEEEEEET
T ss_pred CeEEECCCCCEEEEcC--CeEEEECCC-C----CEEEEEECCCC--ceeEEEECCCCCEEEEEcC
Confidence 9999999999999984 778877753 3 23344444543 7899994 357999764
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.9e-22 Score=181.78 Aligned_cols=247 Identities=14% Similarity=0.121 Sum_probs=165.0
Q ss_pred cceeeeEEcCCCCEEEEEecC------------------------CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcc
Q 039428 49 FLCETAKWDDVGRRFLVSFLD------------------------GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATM 104 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~------------------------~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~ 104 (335)
-.|.++|++++|++|+++..+ ++|+++|..+++ ++. ..... ....|.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~----~~~---~~~~~--~~~~p~ 94 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE----ILQ---SSGKN--LFYLPH 94 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC----EEE---EECTT--TCSSEE
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe----EEe---ccCCC--ccCCce
Confidence 368999999999998877544 479999864455 121 21111 124799
Q ss_pred eEEEeCCCCeEEEEEecCCCCccceEEEEECCCCe-EEEEeec-CCC---ccCCCCCCceeECC-CCcEEEEeC-CCCeE
Q 039428 105 GIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWK-RLFLTQL-SGK---SEEKSTADDIAVDA-EGNAYVTDV-VSSKI 177 (335)
Q Consensus 105 Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~-~~~~~~~-~~~---~~~~~~p~~~~vd~-~G~lyV~d~-~~~~I 177 (335)
||++|+ +|+|||+ |... ++|.+||+++.. ....... ..+ ...+..|+++++|+ +|++||+|+ .+++|
T Consensus 95 gia~d~-~g~l~v~--d~~~---~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 95 GLSIDT-DGNYWVT--DVAL---HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp EEEECT-TSCEEEE--ETTT---TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred EEEECC-CCCEEEE--ECCC---CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 999997 7889994 5543 369999987652 2222211 000 11267899999999 799999997 79999
Q ss_pred EEEccCCcEEEEecCCccccccccccccccCeEEEccC-CeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCC-
Q 039428 178 WKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD-GFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGD- 255 (335)
Q Consensus 178 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d-g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pd- 255 (335)
++++++|+....++............+..|+||+++++ |+|||++..+++|.+++++.++ ....+...+ . -..|.
T Consensus 169 ~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~-~~~~~~~~~-~-~~~~~~ 245 (329)
T 3fvz_A 169 VQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE-FVREIKHAS-F-GRNVFA 245 (329)
T ss_dssp EEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-EEEEECCTT-T-TTCEEE
T ss_pred EEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc-EEEEEeccc-c-CCCcce
Confidence 99999998877553211000000123456999999998 7999999999999999998442 555554322 1 12244
Q ss_pred -----eEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeec--CCCCCcceEEEEe-CCeEEEEecc
Q 039428 256 -----GLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFN--GPTHRVATAATVK-DGRVYLSHLL 317 (335)
Q Consensus 256 -----Gia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~--~p~~~~Pt~va~~-~g~lyV~~~~ 317 (335)
|++++.+|++|+++...+.+.+++...+ +++..+. ...+..|.+++++ +|+|||++..
T Consensus 246 ~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g----~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~ 311 (329)
T 3fvz_A 246 ISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG----EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAH 311 (329)
T ss_dssp EEEETTEEEEEECCCCTTCSCCCCEEEEETTTC----CEEEEECCSSSCCSSEEEEEECTTSEEEEEESS
T ss_pred eeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC----eEEEEEcCCCCccCCeeEEEECCCCCEEEEECC
Confidence 4445556667766554457888876655 2233331 2346779999997 7899998754
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.6e-21 Score=170.79 Aligned_cols=234 Identities=12% Similarity=0.060 Sum_probs=165.9
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCC---cCCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDD---VVGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~---~~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
..|.+++++++|++|+++..+++|.++|. +++. +. .+...+ .....|.++++++.++++||+. ....
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~-~g~~----~~---~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~--~~~~ 99 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRF----KF---QFGECGKRDSQLLYPNRVAVVRNSGDIIVTE--RSPT 99 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECT-TSCE----EE---EECCBSSSTTCBSSEEEEEEETTTTEEEEEE--CGGG
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECC-CCcE----EE---EecccCCCcccccCceEEEEEcCCCeEEEEc--CCCC
Confidence 47999999999998877777899999985 4551 22 111111 0114689999964589999963 2111
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
..|.+||.++ +....... .....|+++++|++|++||++..+++|++++++|+....+... ....
T Consensus 100 --~~i~~~d~~g-~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~--------~~~~ 164 (286)
T 1q7f_A 100 --HQIQIYNQYG-QFVRKFGA----TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS--------KHLE 164 (286)
T ss_dssp --CEEEEECTTS-CEEEEECT----TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECT--------TTCS
T ss_pred --CEEEEECCCC-cEEEEecC----ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCC--------CccC
Confidence 4699999654 44322222 1256899999999999999999999999999998876644321 1234
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCC-eEEEEEcCCCc
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYP-SARLVESSDGW 284 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~-~~~v~~~~~~~ 284 (335)
.|++|+++++|++|+++..+++|++++.++. ....+...+ . +..|.++++|++|++||++...+ .+.+++.. +.
T Consensus 165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~g-~-~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~ 239 (286)
T 1q7f_A 165 FPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ--YLRQIGGEG-I-TNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQ 239 (286)
T ss_dssp SEEEEEECSSSEEEEEEGGGTEEEEEETTCC--EEEEESCTT-T-SCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SC
T ss_pred CcEEEEECCCCCEEEEECCCCEEEEEcCCCC--EEEEEccCC-c-cCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CC
Confidence 5999999999999999999999999999775 555554333 1 46799999999999999987555 78877643 31
Q ss_pred EEEEEeeeecCCCCCcceEEEEe-CCeEEEEe
Q 039428 285 ETASVVAKFNGPTHRVATAATVK-DGRVYLSH 315 (335)
Q Consensus 285 ~~~~~~~~~~~p~~~~Pt~va~~-~g~lyV~~ 315 (335)
....... ......|.+++++ +|+|||++
T Consensus 240 -~~~~~~~--~~~~~~~~~i~~~~~g~l~vs~ 268 (286)
T 1q7f_A 240 -LISALES--KVKHAQCFDVALMDDGSVVLAS 268 (286)
T ss_dssp -EEEEEEE--SSCCSCEEEEEEETTTEEEEEE
T ss_pred -EEEEEcc--cCCCCcceeEEECCCCcEEEEC
Confidence 1111111 1123457899997 89999985
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=6e-21 Score=170.14 Aligned_cols=219 Identities=15% Similarity=0.139 Sum_probs=154.4
Q ss_pred cceeeeEEcCCCC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 49 FLCETAKWDDVGR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 49 ~~pegia~d~~g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
..|++++||++++ +|+++..+++|++++. ++.. .. .++ ..+. ..|++|++|+.+++||++ |...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~-~g~~----~~--~~~-~~~~--~~p~~ia~d~~~~~lyv~--d~~~--- 100 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASL-HGGE----PT--TII-RQDL--GSPEGIALDHLGRTIFWT--DSQL--- 100 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEES-SSCC----CE--EEE-CTTC--CCEEEEEEETTTTEEEEE--ETTT---
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEec-CCCC----cE--EEE-ECCC--CCccEEEEEecCCeEEEE--ECCC---
Confidence 4689999999655 5555577899999995 4542 12 132 2222 479999999867899995 5443
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCC--CCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVV--SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~--~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
++|.++|+++........ .+...|+++++|+ +|++|++|.. +++|++++.+|+..+.+... ..
T Consensus 101 ~~I~~~~~~g~~~~~~~~-----~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~---------~~ 166 (267)
T 1npe_A 101 DRIEVAKMDGTQRRVLFD-----TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD---------NL 166 (267)
T ss_dssp TEEEEEETTSCSCEEEEC-----SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT---------TC
T ss_pred CEEEEEEcCCCCEEEEEE-----CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEEC---------CC
Confidence 469999998654332221 1257899999999 4789999987 68999999998654433211 23
Q ss_pred cccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 205 FGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
..|+||++++++ +||+++..+++|+++++++. ....+. .+ +..|+||++| ++.+|+++...+++.+++...+
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~--~~~~~~-~~---~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP--GRRKVL-EG---LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTEE--EEEEEE-EC---CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC--ceEEEe-cC---CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCC
Confidence 459999999976 99999999999999999875 333332 12 3569999998 6899999887788888886554
Q ss_pred cEEEEEeeeecCCCCCcceEEEEe
Q 039428 284 WETASVVAKFNGPTHRVATAATVK 307 (335)
Q Consensus 284 ~~~~~~~~~~~~p~~~~Pt~va~~ 307 (335)
+....+.......|.++++.
T Consensus 240 ----~~~~~i~~g~~~~p~gi~~~ 259 (267)
T 1npe_A 240 ----KEMDTFHPHKQTRLYGITIA 259 (267)
T ss_dssp ----EEEEEECCSSCCCCCCEEEE
T ss_pred ----CceEEEccccccccceeeec
Confidence 22333322222347888875
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=7.2e-21 Score=174.48 Aligned_cols=230 Identities=17% Similarity=0.103 Sum_probs=157.4
Q ss_pred hhhhhhhhhhcCCCcee-EEEcCCCcceeeeEEcCCCC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCC
Q 039428 25 IISIELAIAMAKPATHV-YQYHSPSFLCETAKWDDVGR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNA 102 (335)
Q Consensus 25 ~~~~~~~~~~~d~~~~~-~~~~~~~~~pegia~d~~g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~ 102 (335)
+++....|...+..... ..+......|++++||++++ +||++..+++|++++. ++...+...+ .++ ..++ ..
T Consensus 5 l~~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~-~g~~~~~~~~--~~~-~~~~--~~ 78 (316)
T 1ijq_A 5 FFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL-DRAHGVSSYD--TVI-SRDI--QA 78 (316)
T ss_dssp EEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CE--EEE-CSSC--SC
T ss_pred EEECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEEC-CCCCCCcccE--EEE-eCCC--CC
Confidence 44555566666555433 22223345799999998654 5555577899999985 4410000011 122 1222 47
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCC-CeEEEE
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVS-SKIWKV 180 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~-~~I~~~ 180 (335)
|.||++|+.+++||++ |... +.|.++|+++......... ....|+++++|| +|++|++|+.. ++|+++
T Consensus 79 p~glavd~~~~~ly~~--d~~~---~~I~~~~~~g~~~~~~~~~-----~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~ 148 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWT--DSVL---GTVSVADTKGVKRKTLFRE-----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 148 (316)
T ss_dssp CCEEEEETTTTEEEEE--ETTT---TEEEEEETTSSSEEEEEEC-----TTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred cCEEEEeecCCeEEEE--ECCC---CEEEEEeCCCCceEEEEEC-----CCCCcceEEeCCCCCEEEEEccCCCCeEEEE
Confidence 8999999768899994 5543 3699999987654433221 257899999998 57899999876 899999
Q ss_pred ccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEE
Q 039428 181 GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLAL 259 (335)
Q Consensus 181 d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~ 259 (335)
+++|+..+.+... ....|+||++++++ +||++|..+++|+++++++. ..+.+...+ ..+..|+||++
T Consensus 149 ~~dG~~~~~~~~~---------~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~--~~~~~~~~~-~~~~~P~giav 216 (316)
T 1ijq_A 149 GLNGVDIYSLVTE---------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILEDE-KRLAHPFSLAV 216 (316)
T ss_dssp ETTSCCEEEEECS---------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEEECT-TTTSSEEEEEE
T ss_pred cCCCCCeEEEEEC---------CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC--ceEEEeecC-CccCCcEEEEE
Confidence 9999876544221 23459999999865 99999999999999999976 344443222 12567999999
Q ss_pred cCCCcEEEEecCCCeEEEEEcCCC
Q 039428 260 LSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 260 d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
+ ++.+|+++++.+++.+++..++
T Consensus 217 ~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 217 F-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp E-TTEEEEEETTTTEEEEEETTTC
T ss_pred E-CCEEEEEECCCCeEEEEeCCCC
Confidence 8 4899999887777877775444
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-21 Score=178.55 Aligned_cols=240 Identities=15% Similarity=0.139 Sum_probs=162.6
Q ss_pred hhhhhhhhcCCCceeEEE-cCCCcceeeeEEcCCC-CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcc
Q 039428 27 SIELAIAMAKPATHVYQY-HSPSFLCETAKWDDVG-RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATM 104 (335)
Q Consensus 27 ~~~~~~~~~d~~~~~~~~-~~~~~~pegia~d~~g-~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~ 104 (335)
+....|...+.....+.. ......|.+++||+++ .+||++...++|++++. ++.. .+ .++ ..+. ..|.
T Consensus 50 ~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~-~g~~----~~--~~~-~~~~--~~p~ 119 (349)
T 3v64_C 50 ANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANL-NGSN----VE--EVV-STGL--ESPG 119 (349)
T ss_dssp ECBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEET-TSCS----CE--EEE-CSSC--SCCC
T ss_pred ecccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEec-CCCC----ce--EEE-eCCC--CCcc
Confidence 334445444444333222 2233469999999754 45555578899999985 4542 12 133 2222 3789
Q ss_pred eEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCC-CeEEEEcc
Q 039428 105 GIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVS-SKIWKVGV 182 (335)
Q Consensus 105 Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~-~~I~~~d~ 182 (335)
||++|+.+++||++ |... +.|.++++++........ ..+..|+++++|| +|.+|++|+.. ++|+++++
T Consensus 120 glavd~~~g~ly~~--d~~~---~~I~~~~~dG~~~~~l~~-----~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 120 GLAVDWVHDKLYWT--DSGT---SRIEVANLDGAHRKVLLW-----QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp EEEEETTTTEEEEE--ETTT---TEEEEEETTSCSCEEEEC-----TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEEEecCCCeEEEE--cCCC---CeEEEEcCCCCceEEEEe-----CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 99999778999994 5543 369999998764332221 1267899999998 57899999998 99999999
Q ss_pred CCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC
Q 039428 183 EGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS 261 (335)
Q Consensus 183 ~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~ 261 (335)
+|...+.+... ....||||++|+++ +||++|..+++|+++++++. ..+.+...+ +..|+||+++
T Consensus 190 dG~~~~~~~~~---------~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~--~~~~~~~~~---~~~P~giav~- 254 (349)
T 3v64_C 190 DGSGRRIIADT---------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS--HRKAVISQG---LPHPFAITVF- 254 (349)
T ss_dssp TSCSCEESCCS---------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEECSS---CSSEEEEEEE-
T ss_pred CCCCcEEEEEC---------CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC--ceEEEEeCC---CCCceEEEEE-
Confidence 98765543211 23459999999855 99999999999999999986 333332222 5679999995
Q ss_pred CCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEE
Q 039428 262 PTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATV 306 (335)
Q Consensus 262 ~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~ 306 (335)
++.+|+++++.+++..++..++.....+.. ....|+++++
T Consensus 255 ~~~ly~td~~~~~V~~~~~~~G~~~~~i~~-----~~~~p~gi~v 294 (349)
T 3v64_C 255 EDSLYWTDWHTKSINSANKFTGKNQEIIRN-----KLHFPMDIHT 294 (349)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCSCEEEEC-----SCSCCCCEEE
T ss_pred CCEEEEecCCCCeEEEEEccCCCccEEecc-----CCCCCceEEE
Confidence 679999988777887776444422222221 2345778877
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-21 Score=170.93 Aligned_cols=227 Identities=14% Similarity=0.198 Sum_probs=159.0
Q ss_pred ceeeeEEcCCCCEEE-EEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFL-VSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~-~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.|++++++++|++|+ .+..+++|++++. ++.. .. ...... ...|.+|++++ +|+||++ +. . +
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~-~~~~----~~---~~~~~~--~~~p~~i~~~~-~g~l~v~--~~-~---~ 87 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLAT-GSTG----TT---VLPFNG--LYQPQGLAVDG-AGTVYVT--DF-N---N 87 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC----------E---ECCCCS--CCSCCCEEECT-TCCEEEE--ET-T---T
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecC-CCcc----cc---eEeeCC--cCCcceeEECC-CCCEEEE--cC-C---C
Confidence 899999999999777 4367889999985 3331 11 221121 24789999997 7889995 33 2 4
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
.|.+||++++.... ... .+...|+++++|++|++||++..+++|++++..+....... . .....|+
T Consensus 88 ~i~~~d~~~~~~~~-~~~----~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~---~------~~~~~p~ 153 (270)
T 1rwi_B 88 RVVTLAAGSNNQTV-LPF----DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP---F------TGLNDPD 153 (270)
T ss_dssp EEEEECTTCSCCEE-CCC----CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC---C------CSCCSCC
T ss_pred EEEEEeCCCceEee-eec----CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec---c------ccCCCce
Confidence 69999998765432 111 12468999999999999999999999999986643322110 0 1234599
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEE
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETAS 288 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~ 288 (335)
+|+++++|+||+++..+++|++++.++. ........+ +..|.++++|++|++|+++...+.+.+++...... .
T Consensus 154 ~i~~~~~g~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~---~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~--~ 226 (270)
T 1rwi_B 154 GVAVDNSGNVYVTDTDNNRVVKLEAESN--NQVVLPFTD---ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS--T 226 (270)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEECTTTC--CEEECCCSS---CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC--E
T ss_pred eEEEeCCCCEEEEECCCCEEEEEecCCC--ceEeecccC---CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc--e
Confidence 9999999999999999999999999886 333222211 46699999999999999987557788777543211 1
Q ss_pred EeeeecCCCCCcceEEEEe-CCeEEEEecc
Q 039428 289 VVAKFNGPTHRVATAATVK-DGRVYLSHLL 317 (335)
Q Consensus 289 ~~~~~~~p~~~~Pt~va~~-~g~lyV~~~~ 317 (335)
. ........|.+++++ +|+|||++..
T Consensus 227 ~---~~~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 227 V---LPFTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp E---CCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred e---eccCCCCCceeEEECCCCCEEEEECC
Confidence 1 111224568999996 7899998654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-21 Score=172.44 Aligned_cols=230 Identities=17% Similarity=0.214 Sum_probs=159.1
Q ss_pred EEcCCCcceeeeEEcCCCC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEec
Q 039428 43 QYHSPSFLCETAKWDDVGR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD 121 (335)
Q Consensus 43 ~~~~~~~~pegia~d~~g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D 121 (335)
.+.....++||++|+++|+ +||++..+++|+++++ +++ .. .+. .+. ..++++++|+ +|+||++.
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-----~~--~~~-~~~---~~~~gl~~d~-dG~l~v~~-- 103 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-----VD--VLL-DAT---AFTNGNAVDA-QQRLVHCE-- 103 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-----EE--EEE-ESC---SCEEEEEECT-TSCEEEEE--
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-----EE--EEe-CCC---CccceeeECC-CCCEEEEE--
Confidence 3445556899999999998 6666688899999985 565 22 132 222 3689999997 78999953
Q ss_pred CCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC-----------------CCCeEEEEccC-
Q 039428 122 VLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-----------------VSSKIWKVGVE- 183 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-----------------~~~~I~~~d~~- 183 (335)
... ..|.++|++ ++........ .+...+.|+++++|++|++|++|. ..+.|++++++
T Consensus 104 ~~~---~~v~~~~~~-g~~~~~~~~~-~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 104 HGR---RAITRSDAD-GQAHLLVGRY-AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp TTT---TEEEEECTT-SCEEEEECEE-TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred CCC---CEEEEECCC-CCEEEEEecc-CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 222 359999987 5444222211 122367899999999999999974 13689999995
Q ss_pred CcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCC-----CEEEEEeCCCCc-eeEEEEeccCCcCCCCCCe
Q 039428 184 GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCS-----GNLFKIDIRKEE-EEVKLIELRGGSSLSLGDG 256 (335)
Q Consensus 184 g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~-----~~v~~~d~~~~~-~~~~~~~~~g~~~~~~pdG 256 (335)
|+...+. . ...|||++++||| .||++++.. ++|++++.++++ ...+.+.... ...|+|
T Consensus 179 g~~~~~~---~---------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~---~~~pdg 243 (305)
T 3dr2_A 179 SPLQRMA---D---------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP---DGLPDG 243 (305)
T ss_dssp CCCEEEE---E---------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS---SSCCCS
T ss_pred CcEEEEe---c---------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC---CCCCCe
Confidence 4443321 1 2358999999999 699999874 899999988652 0122222111 356999
Q ss_pred EEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe--CCeEEEEec
Q 039428 257 LALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK--DGRVYLSHL 316 (335)
Q Consensus 257 ia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~~ 316 (335)
|++|++|+||++.. +++.+++. ++ +....+..|. .|+++++. +++|||+..
T Consensus 244 i~~d~~G~lwv~~~--~gv~~~~~-~g----~~~~~~~~~~--~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 244 FCVDRGGWLWSSSG--TGVCVFDS-DG----QLLGHIPTPG--TASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp EEECTTSCEEECCS--SEEEEECT-TS----CEEEEEECSS--CCCEEEECTTSCEEEEEET
T ss_pred EEECCCCCEEEecC--CcEEEECC-CC----CEEEEEECCC--ceeEEEEeCCCCEEEEEcC
Confidence 99999999999985 56777765 33 2334444444 37889994 678999764
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-21 Score=180.00 Aligned_cols=241 Identities=15% Similarity=0.130 Sum_probs=163.3
Q ss_pred hhhhhhhhcCCCceeEE-EcCCCcceeeeEEcCCC-CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcc
Q 039428 27 SIELAIAMAKPATHVYQ-YHSPSFLCETAKWDDVG-RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATM 104 (335)
Q Consensus 27 ~~~~~~~~~d~~~~~~~-~~~~~~~pegia~d~~g-~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~ 104 (335)
+....|...+.....+. +......|++++||+++ .+||++...++|++++. ++.. .+ .++ ..+. ..|.
T Consensus 93 ~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~-~g~~----~~--~~~-~~~~--~~p~ 162 (386)
T 3v65_B 93 ANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANL-NGSN----VE--EVV-STGL--ESPG 162 (386)
T ss_dssp ECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEET-TSCC----EE--EEE-CSSC--SCCC
T ss_pred ecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEec-CCCC----cE--EEE-eCCC--CCcc
Confidence 33444544554443322 22233469999999754 45555588899999985 4542 22 133 2222 3789
Q ss_pred eEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCC-CeEEEEcc
Q 039428 105 GIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVS-SKIWKVGV 182 (335)
Q Consensus 105 Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~-~~I~~~d~ 182 (335)
||++|+.+++||+ +|... ++|.++++++........ .++..|+++++||+ |++|++|+.. ++|+++++
T Consensus 163 glavd~~~g~lY~--~d~~~---~~I~~~~~dg~~~~~l~~-----~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 163 GLAVDWVHDKLYW--TDSGT---SRIEVANLDGAHRKVLLW-----QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp CEEEETTTTEEEE--EETTT---TEEEECBTTSCSCEEEEC-----SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEEEEeCCCeEEE--EcCCC---CeEEEEeCCCCceEEeec-----CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 9999977899999 45543 359999998764332221 12678999999975 7899999988 99999999
Q ss_pred CCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC
Q 039428 183 EGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS 261 (335)
Q Consensus 183 ~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~ 261 (335)
+|...+.+... ....|+||++++++ +||++|..+++|+++++++. ..+.+...+ +..|+||+++
T Consensus 233 dG~~~~~~~~~---------~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~--~~~~~~~~~---~~~P~giav~- 297 (386)
T 3v65_B 233 DGSGRRIIADT---------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS--HRKAVISQG---LPHPFAITVF- 297 (386)
T ss_dssp TSCSCEEEECS---------SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC--SCEEEECSS---CSSEEEEEEE-
T ss_pred CCCCcEEEEEC---------CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC--eeEEEEECC---CCCceEEEEE-
Confidence 98765443221 23459999999755 99999999999999999876 333332222 5679999995
Q ss_pred CCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe
Q 039428 262 PTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK 307 (335)
Q Consensus 262 ~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~ 307 (335)
++.+|++++..+++.+++..++.....+.. + ...|+++++.
T Consensus 298 ~~~ly~td~~~~~V~~~~~~~G~~~~~i~~----~-~~~p~gi~v~ 338 (386)
T 3v65_B 298 EDSLYWTDWHTKSINSANKFTGKNQEIIRN----K-LHFPMDIHTL 338 (386)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCSCEEEEC----S-CSCCCCEEEE
T ss_pred CCEEEEeeCCCCeEEEEECCCCcceEEEcc----C-CCCCceEEEE
Confidence 579999988777787776444422222221 2 3457788773
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-20 Score=175.62 Aligned_cols=242 Identities=13% Similarity=0.089 Sum_probs=165.0
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.|.+++||++|++|+++..+++|+++|..++. +. .+... +..+. ++++++++.||++ |..+. ..
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~-----~~--~~~~~----~~~~~-ia~~~~g~~l~~~--d~~~~--~~ 195 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK-----VT--TVHPG----FKGGK-PAVTKDKQRVYSI--GWEGT--HT 195 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTE-----EE--EEEET----CCBCB-CEECTTSSEEEEE--BSSTT--CE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCE-----EE--Eeecc----CCCCc-eeEecCCCcEEEE--ecCCC--ce
Confidence 69999999999988888778999999964343 22 13322 23566 9999866678884 44322 26
Q ss_pred EEEEECCCCeEE-EEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 130 LAAYDLSTWKRL-FLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 130 v~~~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
|+++|..++... ...... ......|+++++|+ +|++|+++. +++|+++|+++.....+....... .....|
T Consensus 196 I~~~d~~~~~~~~~~g~~~--~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~g----~~~~~P 268 (409)
T 3hrp_A 196 VYVYMKASGWAPTRIGQLG--STFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELSG----SLGTNP 268 (409)
T ss_dssp EEEEEGGGTTCEEEEEECC--TTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCCS----CCCCSS
T ss_pred EEEEEcCCCceeEEeeecc--chhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEecccccC----CCCCCc
Confidence 999999866432 111221 11267899999999 689999876 789999999866544331100110 011234
Q ss_pred C-eEEEcc-CCeEEEEECCCCEEEEEeCCCCceeEEEEecc---C-------CcCCCCCCeEEEcCCCcEEEEec-CCCe
Q 039428 208 N-GIVYHP-DGFLIVIHMCSGNLFKIDIRKEEEEVKLIELR---G-------GSSLSLGDGLALLSPTKLVVAGN-PYPS 274 (335)
Q Consensus 208 ~-Gia~~~-dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~---g-------~~~~~~pdGia~d~~g~l~va~~-~~~~ 274 (335)
. +|+++| +++||+++..+++|++++.++. ........ + ...+..|+||++|++|+||+++. ..++
T Consensus 269 ~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~ 346 (409)
T 3hrp_A 269 GPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC 346 (409)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE
T ss_pred cccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE
Confidence 4 999999 4799999999999999999875 22222211 0 01256799999999999999988 7788
Q ss_pred EEEEEcCCCcEEEEEeeee------c----CCCCCcceEEEEe-CCeEEEEecc
Q 039428 275 ARLVESSDGWETASVVAKF------N----GPTHRVATAATVK-DGRVYLSHLL 317 (335)
Q Consensus 275 ~~v~~~~~~~~~~~~~~~~------~----~p~~~~Pt~va~~-~g~lyV~~~~ 317 (335)
+++++..++ ....+.+.- . ...+..|.+++++ +|+|||++..
T Consensus 347 I~~~~~~~G-~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~ 399 (409)
T 3hrp_A 347 LRKLDILDG-YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW 399 (409)
T ss_dssp EEEEETTTT-EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST
T ss_pred EEEEECCCC-EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC
Confidence 888875555 222333320 0 0126789999997 7999998754
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-20 Score=177.28 Aligned_cols=245 Identities=11% Similarity=0.005 Sum_probs=166.1
Q ss_pred hhhhhhhhhhhhhhhcCCCceeEEEc-----------CCCcceeeeEEcCCCCEEEEEec-CC-eEEEEECCCCCCCcce
Q 039428 20 IPIAYIISIELAIAMAKPATHVYQYH-----------SPSFLCETAKWDDVGRRFLVSFL-DG-GVGQVLVPDEYSPGTV 86 (335)
Q Consensus 20 ~p~~~~~~~~~~~~~~d~~~~~~~~~-----------~~~~~pegia~d~~g~~~~~~~~-~~-~I~~~d~~~g~~~~~v 86 (335)
.|.+++++.++.++++|...+++..- .....|. ++|+++|+.+|+... .+ +|++++.. +.+ .
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~-~~~---~ 206 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA-SGW---A 206 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG-GTT---C
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcC-CCc---e
Confidence 47777777777788887754444331 1233567 999999998888733 33 99999954 432 0
Q ss_pred eeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCC-ceeECC-C
Q 039428 87 LEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTAD-DIAVDA-E 164 (335)
Q Consensus 87 ~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~-~~~vd~-~ 164 (335)
.. .+-......+..|+++++++++++||+ +|.. +.|++||++++...........+.....|. ++++|+ +
T Consensus 207 ~~--~~g~~~~~~~~~p~~iav~p~~g~lyv--~d~~----~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 207 PT--RIGQLGSTFSGKIGAVALDETEEWLYF--VDSN----KNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD 278 (409)
T ss_dssp EE--EEEECCTTSCSCCCBCEECTTSSEEEE--ECTT----CEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT
T ss_pred eE--EeeeccchhcCCcEEEEEeCCCCeEEE--EECC----CcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC
Confidence 11 110111112357899999987899999 4542 469999998876543322211111123355 999999 5
Q ss_pred CcEEEEeCCCCeEEEEccCCcEEEEecCC---ccc-cccccccccccCeEEEccCCeEEEEEC-CCCEEEEEeCCCCcee
Q 039428 165 GNAYVTDVVSSKIWKVGVEGQLLSIIRSP---LFT-AKEWYKNVFGLNGIVYHPDGFLIVIHM-CSGNLFKIDIRKEEEE 239 (335)
Q Consensus 165 G~lyV~d~~~~~I~~~d~~g~~~~~~~~~---~~~-~~~~~~~~~~p~Gia~~~dg~Lyvad~-~~~~v~~~d~~~~~~~ 239 (335)
|++||+|+.+++|++++++|+...+++.. .+. .+.....+..|+||+++++|+|||+|. .+++|.++++..+ .
T Consensus 279 g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G--~ 356 (409)
T 3hrp_A 279 SNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG--Y 356 (409)
T ss_dssp TEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT--E
T ss_pred CEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC--E
Confidence 89999999999999999999866655432 111 011122356699999999999999999 9999999996555 4
Q ss_pred EEEEecc-CC----------cCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 240 VKLIELR-GG----------SSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 240 ~~~~~~~-g~----------~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
+..+... +. ..+..|+|+++|++|+|||++...++++.+.
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 4444321 10 1256799999999999999988667777665
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-20 Score=171.86 Aligned_cols=250 Identities=17% Similarity=0.205 Sum_probs=163.2
Q ss_pred cceeeeEEcCCCCEEEEE-ec-CC--eEEEEECCCCCCCcceeeeeEEee---cCCcCCCCcceEEEeCCCCeEEEEEec
Q 039428 49 FLCETAKWDDVGRRFLVS-FL-DG--GVGQVLVPDEYSPGTVLEEVKLVK---EDDVVGNATMGIAVDRPRNRLLVAFTD 121 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~-~~--~I~~~d~~~g~~~~~v~~~~~~~~---~~~~~~~~p~Gi~~d~~~g~l~v~~~D 121 (335)
..|++++++++|++|+.. .+ ++ +|++++ +++ +. ++.. ........|+||++|+ +|+|||+ |
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g~-----~~--~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~--D 84 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT--QDG-----LI--PFPPQSGNAIITFDTVLGIKSDG-NGIVWML--D 84 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE--TTE-----EE--ESCCCCSSCCCCCSCEEEEEECS-SSEEEEE--E
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC--CCC-----ee--cCCCcccCcccceeEeeEEEEcC-CCcEEEE--c
Confidence 579999999999987775 33 34 899997 343 11 1211 1111125799999997 7999995 5
Q ss_pred CCC--CccceEEEEECCCCeEEEEeecCCC-ccCCCCCCceeECCC-CcEEEEeC---CCCeEEEEccC-CcEEEEecCC
Q 039428 122 VLG--NKYSALAAYDLSTWKRLFLTQLSGK-SEEKSTADDIAVDAE-GNAYVTDV---VSSKIWKVGVE-GQLLSIIRSP 193 (335)
Q Consensus 122 ~~~--~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~p~~~~vd~~-G~lyV~d~---~~~~I~~~d~~-g~~~~~~~~~ 193 (335)
... ....+|++||++++++.....++.. .....+|+++++|++ |.+||+|+ ..+.|+++|++ ++..+.+...
T Consensus 85 ~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~ 164 (343)
T 2qe8_A 85 NGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGY 164 (343)
T ss_dssp CHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTC
T ss_pred CCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCC
Confidence 431 0013699999999987655554321 122467899999975 78999999 88999999987 5555544220
Q ss_pred -cccc-------ccc-------cc----cccccCeEEEccCC-eEEEEECCCCEEEEEeCCC---Cc-e--e-EEEEecc
Q 039428 194 -LFTA-------KEW-------YK----NVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRK---EE-E--E-VKLIELR 246 (335)
Q Consensus 194 -~~~~-------~~~-------~~----~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~---~~-~--~-~~~~~~~ 246 (335)
.+.. .+. .. -..++|||+++||| .||+++..+++|++++.+. .. . . ...+...
T Consensus 165 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (343)
T 2qe8_A 165 PGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY 244 (343)
T ss_dssp TTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE
T ss_pred CcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec
Confidence 1100 000 00 11468999999999 8999999999999998642 10 0 0 0001111
Q ss_pred CCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe-CCeEEEEec
Q 039428 247 GGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK-DGRVYLSHL 316 (335)
Q Consensus 247 g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~-~g~lyV~~~ 316 (335)
+. ...|+||++|++|++|+++...+++.+++..++ +...+ ...|....|++++++ +|+|||++.
T Consensus 245 g~--~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G-~~~~~---~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 245 SE--KPICDGISIDKDHNIYVGDLAHSAIGVITSADR-AYKLL---VTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EE--CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT-EEEEE---EECGGGSCEEEEEECTTSCEEEEEC
T ss_pred cc--CCCCceEEECCCCCEEEEccCCCeEEEEECCCC-CEEEE---EECCceecCCeeEECCCCcEEEEeC
Confidence 11 235999999999999999876677887776334 22122 123446779999996 899999553
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-19 Score=160.44 Aligned_cols=244 Identities=9% Similarity=0.020 Sum_probs=171.1
Q ss_pred hcCCCceeEEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCC
Q 039428 34 MAKPATHVYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRN 113 (335)
Q Consensus 34 ~~d~~~~~~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g 113 (335)
|......++.++.....|++++++++|++|+.+..++.|.++|+ +++ +.. + ..+. ....|.+|++++ +|
T Consensus 5 w~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~-~~~-----~~~--~-~~~~-~~~~~~~i~~~~-~g 73 (300)
T 2qc5_A 5 WMNFYLEEFNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQ-SGR-----IKE--F-EVPT-PDAKVMCLIVSS-LG 73 (300)
T ss_dssp GGSEEEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TSC-----EEE--E-ECSS-TTCCEEEEEECT-TS
T ss_pred ceeeeEEEEecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECC-CCc-----eEE--E-ECCC-CCCcceeEEECC-CC
Confidence 33333344555666678999999999998888777899999985 454 221 2 2222 124789999996 88
Q ss_pred eEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCC
Q 039428 114 RLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSP 193 (335)
Q Consensus 114 ~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~ 193 (335)
++|++. ... +.|.++|++ ++... ...+. . ...|+++++|++|++||++..++.|++++++++.....
T Consensus 74 ~l~v~~--~~~---~~v~~~d~~-g~~~~-~~~~~--~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~--- 140 (300)
T 2qc5_A 74 DIWFTE--NGA---NKIGKLSKK-GGFTE-YPLPQ--P-DSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYD--- 140 (300)
T ss_dssp CEEEEE--TTT---TEEEEECTT-SCEEE-EECSS--T-TCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEE---
T ss_pred CEEEEe--cCC---CeEEEECCC-CCeEE-ecCCC--C-CCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEcc---
Confidence 999953 322 359999998 55432 22211 1 46799999999999999999889999999997665421
Q ss_pred ccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCC
Q 039428 194 LFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYP 273 (335)
Q Consensus 194 ~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~ 273 (335)
+.. ....|++|+++++|+||+++..+++|++++.++. ...+.... . ...|.++++|++|++|+++...+
T Consensus 141 -~~~-----~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~---~~~~~~~~-~-~~~~~~i~~d~~g~l~v~~~~~~ 209 (300)
T 2qc5_A 141 -LPN-----KGSYPAFITLGSDNALWFTENQNNSIGRITNTGK---LEEYPLPT-N-AAAPVGITSGNDGALWFVEIMGN 209 (300)
T ss_dssp -CSS-----TTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC---EEEEECSS-T-TCCEEEEEECTTSSEEEEETTTT
T ss_pred -CCC-----CCCCceeEEECCCCCEEEEecCCCeEEEECCCCc---EEEeeCCC-C-CCCcceEEECCCCCEEEEccCCC
Confidence 110 2345999999999999999999999999999543 33344332 1 45699999999999999976556
Q ss_pred eEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe-CCeEEEEecc
Q 039428 274 SARLVESSDGWETASVVAKFNGPTHRVATAATVK-DGRVYLSHLL 317 (335)
Q Consensus 274 ~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~-~g~lyV~~~~ 317 (335)
.+.+++. ++. .... .+. .....|.+++++ +|+|||+...
T Consensus 210 ~i~~~~~-~g~-~~~~--~~~-~~~~~~~~i~~d~~g~l~v~~~~ 249 (300)
T 2qc5_A 210 KIGRITT-TGE-ISEY--DIP-TPNARPHAITAGKNSEIWFTEWG 249 (300)
T ss_dssp EEEEECT-TCC-EEEE--ECS-STTCCEEEEEECSTTCEEEEETT
T ss_pred EEEEEcC-CCc-EEEE--ECC-CCCCCceEEEECCCCCEEEeccC
Confidence 6777765 331 1111 111 135668899997 8899997643
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-19 Score=167.01 Aligned_cols=246 Identities=15% Similarity=0.162 Sum_probs=155.1
Q ss_pred CcceeeeEEcCCCCEEEEEe------------cCCeEEEEECCCCCCCcceeeeeEEeec-CCcCCCCcceEEEeCC-CC
Q 039428 48 SFLCETAKWDDVGRRFLVSF------------LDGGVGQVLVPDEYSPGTVLEEVKLVKE-DDVVGNATMGIAVDRP-RN 113 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~------------~~~~I~~~d~~~g~~~~~v~~~~~~~~~-~~~~~~~p~Gi~~d~~-~g 113 (335)
...||.++++++|.+|..+. ..|+|+++|+.+... + ..+..+... .....-.|+||.+.++ ++
T Consensus 49 ~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~--~-~~~l~~~g~~~~~~~f~PhGi~~~~d~dg 125 (355)
T 3sre_A 49 DNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEP--A-VSELEIIGNTLDISSFNPHGISTFIDDDN 125 (355)
T ss_dssp CSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSC--C-EEECEEECSSCCGGGCCEEEEEEEECTTC
T ss_pred CCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCC--c-eEEEEccCCCCCcCceeeeeeEEEECCCC
Confidence 45799999999887665541 578999999642221 1 122122111 1111237999999642 23
Q ss_pred --eEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC-----------------CC
Q 039428 114 --RLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-----------------VS 174 (335)
Q Consensus 114 --~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-----------------~~ 174 (335)
+|||++....+. .-.|+++|++++.........+ ..++.|||+++|++|++||++. ..
T Consensus 126 ~~~L~Vvnh~~~~s-~ielf~~d~~~~~~~~~~~~~g--~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 126 TVYLLVVNHPGSSS-TVEVFKFQEEEKSLLHLKTIRH--KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp CEEEEEEECSTTCC-EEEEEEEETTTTEEEEEEEECC--TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred cEEEEEEECCCCCC-eEEEEEEECCCCEEEEEecccc--CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc
Confidence 699976432122 2458888888776665545533 3489999999999999999875 25
Q ss_pred CeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCc--eeEEEEeccCCcCC
Q 039428 175 SKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEE--EEVKLIELRGGSSL 251 (335)
Q Consensus 175 ~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~--~~~~~~~~~g~~~~ 251 (335)
++||+++++ +...+.. ....||||+++||| +|||+++..++|++++.+..+ ...+.+...
T Consensus 203 g~vyr~d~~-~~~~~~~-----------~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~----- 265 (355)
T 3sre_A 203 SFVTYYSPN-DVRVVAE-----------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD----- 265 (355)
T ss_dssp EEEEEECTT-CCEEEEE-----------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS-----
T ss_pred cEEEEEECC-eEEEeec-----------CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCC-----
Confidence 789999985 3333221 23459999999999 999999999999999987532 133445432
Q ss_pred CCCCeEEEcC-CCcEEEEe-cCC--------C---eEEEEEcC----CCcEEEEEeeeecCCCCCcceEEEEeCCeEEEE
Q 039428 252 SLGDGLALLS-PTKLVVAG-NPY--------P---SARLVESS----DGWETASVVAKFNGPTHRVATAATVKDGRVYLS 314 (335)
Q Consensus 252 ~~pdGia~d~-~g~l~va~-~~~--------~---~~~v~~~~----~~~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~ 314 (335)
..||||++|+ +|++|++. .+. . .-.|.+.. ..++..++.+. .+.....-|.+...+|+||+.
T Consensus 266 g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v~~d-dG~~l~~~T~a~~~~g~L~iG 344 (355)
T 3sre_A 266 TLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVYKGKLLIG 344 (355)
T ss_dssp SEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEEEEE-CSSSCCSEEEEEEETTEEEEE
T ss_pred CCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEEEEc-CCCEEEeeEEEEEECCEEEEE
Confidence 3599999999 59999963 210 0 11222211 23444444443 233333333344469999997
Q ss_pred ecc
Q 039428 315 HLL 317 (335)
Q Consensus 315 ~~~ 317 (335)
.-+
T Consensus 345 sv~ 347 (355)
T 3sre_A 345 TVF 347 (355)
T ss_dssp ESS
T ss_pred EcC
Confidence 644
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-20 Score=175.22 Aligned_cols=238 Identities=13% Similarity=0.119 Sum_probs=159.9
Q ss_pred cceeeeEEcCC---CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 49 FLCETAKWDDV---GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 49 ~~pegia~d~~---g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
..|++++||++ |++|+++.. ++|+++|+.++. +. .+. .. ...|.+|++++ +|+|||+ |..++
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~-----v~--~~~--~~--~~~P~giavd~-dG~lyVa--d~~~~ 203 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQY-----VD--IKT--TN--IGQCADVNFTL-NGDMVVV--DDQSS 203 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTE-----EE--EEC--CC--CSCEEEEEECT-TCCEEEE--ECCSC
T ss_pred CCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCE-----EE--Eee--cC--CCCccEEEECC-CCCEEEE--cCCCC
Confidence 46999999984 777666655 899999964454 22 132 22 24799999997 6779995 44321
Q ss_pred c-cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccC-CcEEE-EecCCcccccccc
Q 039428 126 K-YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVE-GQLLS-IIRSPLFTAKEWY 201 (335)
Q Consensus 126 ~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~-g~~~~-~~~~~~~~~~~~~ 201 (335)
. ...++.++..++.... ..+ . .+..|+++++|+ +|++||+|..+++|++++++ |.... ++...
T Consensus 204 ~~~~gv~~~~~~~~~~~~-~~~---~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~-------- 270 (433)
T 4hw6_A 204 DTNTGIYLFTRASGFTER-LSL---C-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD-------- 270 (433)
T ss_dssp TTSEEEEEECGGGTTCCE-EEE---E-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS--------
T ss_pred cccceEEEEECCCCeecc-ccc---c-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC--------
Confidence 1 1357777765442210 111 1 268899999999 79999999999999999998 55522 22111
Q ss_pred ccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCce---eEEEEecc-C----------CcCCCCCCeEEE-------
Q 039428 202 KNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEE---EVKLIELR-G----------GSSLSLGDGLAL------- 259 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~---~~~~~~~~-g----------~~~~~~pdGia~------- 259 (335)
....+.+|+++|+| +|||+|..+++|++++.+...+ ....+.-. + ...+..|.||++
T Consensus 271 -~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~ 349 (433)
T 4hw6_A 271 -TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYA 349 (433)
T ss_dssp -CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGT
T ss_pred -CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccc
Confidence 11235689999999 5999999999999999874210 11223211 1 013567999999
Q ss_pred --cCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeec-------------CCCCCcceEEEEe--CCeEEEEecc
Q 039428 260 --LSPTKLVVAGNPYPSARLVESSDGWETASVVAKFN-------------GPTHRVATAATVK--DGRVYLSHLL 317 (335)
Q Consensus 260 --d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~-------------~p~~~~Pt~va~~--~g~lyV~~~~ 317 (335)
|++|+|||++...++++++.. ++ ...++.+.-. ...+..|.+++++ +|+|||++..
T Consensus 350 ~dd~~g~lyvaD~~n~~I~~~~~-~G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 422 (433)
T 4hw6_A 350 GEEDEYDFYFCDRDSHTVRVLTP-EG-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD 422 (433)
T ss_dssp TSSCCEEEEEEETTTTEEEEECT-TS-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred ccCCCCcEEEEECCCCEEEEECC-CC-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC
Confidence 899999999887678887764 44 2323333210 1136789999998 8999998754
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-20 Score=165.24 Aligned_cols=226 Identities=17% Similarity=0.177 Sum_probs=158.8
Q ss_pred hhhhhhhhhhhhhhh-cCCCceeEEE-c-----------CCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcce
Q 039428 20 IPIAYIISIELAIAM-AKPATHVYQY-H-----------SPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTV 86 (335)
Q Consensus 20 ~p~~~~~~~~~~~~~-~d~~~~~~~~-~-----------~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v 86 (335)
.|.+++++..+.+++ ++.....+.. . .....|.+++++++|++|+.+. +++|+++|+ ++..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~-~~~~---- 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAA-GSNN---- 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECT-TCSC----
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeC-CCce----
Confidence 566666666666666 6554433332 1 1124689999999999776666 889999985 4541
Q ss_pred eeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc
Q 039428 87 LEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN 166 (335)
Q Consensus 87 ~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~ 166 (335)
.. ...... ...|.+|++++ +|++|++. ... +.|.++|..+...... .. .....|+++++|++|+
T Consensus 99 ~~---~~~~~~--~~~p~~i~~~~-~g~l~v~~--~~~---~~i~~~~~~~~~~~~~-~~----~~~~~p~~i~~~~~g~ 162 (270)
T 1rwi_B 99 QT---VLPFDG--LNYPEGLAVDT-QGAVYVAD--RGN---NRVVKLAAGSKTQTVL-PF----TGLNDPDGVAVDNSGN 162 (270)
T ss_dssp CE---ECCCCS--CSSEEEEEECT-TCCEEEEE--GGG---TEEEEECTTCCSCEEC-CC----CSCCSCCCEEECTTCC
T ss_pred Ee---eeecCC--cCCCcceEECC-CCCEEEEE--CCC---CEEEEEECCCceeEee-cc----ccCCCceeEEEeCCCC
Confidence 11 111122 14789999997 78999953 322 3699998665433321 11 1256899999999999
Q ss_pred EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEecc
Q 039428 167 AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELR 246 (335)
Q Consensus 167 lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~ 246 (335)
+||++..+++|+++++++........ . ....|.+|+++++|+||+++..+++|+++++++. ....+...
T Consensus 163 l~v~~~~~~~i~~~~~~~~~~~~~~~---~------~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~--~~~~~~~~ 231 (270)
T 1rwi_B 163 VYVTDTDNNRVVKLEAESNNQVVLPF---T------DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST--TSTVLPFT 231 (270)
T ss_dssp EEEEEGGGTEEEEECTTTCCEEECCC---S------SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS--CCEECCCC
T ss_pred EEEEECCCCEEEEEecCCCceEeecc---c------CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC--cceeeccC
Confidence 99999999999999999865442211 0 1245899999999999999999999999999876 33332222
Q ss_pred CCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 247 GGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 247 g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
+ +..|.+++++++|++|+++.+.+.+++++..
T Consensus 232 ~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 232 G---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp S---CSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred C---CCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 2 4569999999999999998766788877654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-19 Score=159.07 Aligned_cols=227 Identities=11% Similarity=0.104 Sum_probs=163.3
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
..|.+++++++|++|+.+..+++|+++|+ +++ .. .+ ..+. .+..|.+|++++ +|++|++ +..+ +
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~-~g~-----~~--~~-~~~~-~~~~~~~i~~~~-~g~l~v~--~~~~---~ 125 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSK-KGG-----FT--EY-PLPQ-PDSGPYGITEGL-NGDIWFT--QLNG---D 125 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECT-TSC-----EE--EE-ECSS-TTCCEEEEEECS-TTCEEEE--ETTT---T
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECC-CCC-----eE--Ee-cCCC-CCCCCccceECC-CCCEEEE--ccCC---C
Confidence 57899999999998887766789999985 455 22 12 2222 124789999996 8999995 3322 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
.|.++|++ ++... ..... ....|+++++|++|++|+++..++.|++++++++...... + .....|.
T Consensus 126 ~i~~~~~~-g~~~~-~~~~~---~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~------~---~~~~~~~ 191 (300)
T 2qc5_A 126 RIGKLTAD-GTIYE-YDLPN---KGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPL------P---TNAAAPV 191 (300)
T ss_dssp EEEEECTT-SCEEE-EECSS---TTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEEC------S---STTCCEE
T ss_pred eEEEECCC-CCEEE-ccCCC---CCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEEeeC------C---CCCCCcc
Confidence 69999998 55442 12211 2568999999999999999999999999999877654211 0 1234589
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEE
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETAS 288 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~ 288 (335)
+|+++++|+||+++..+++|+++++++. ...+.... . ...|.++++|++|++|+++...+++.+++. ++ ...
T Consensus 192 ~i~~d~~g~l~v~~~~~~~i~~~~~~g~---~~~~~~~~-~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g-~~~- 263 (300)
T 2qc5_A 192 GITSGNDGALWFVEIMGNKIGRITTTGE---ISEYDIPT-P-NARPHAITAGKNSEIWFTEWGANQIGRITN-DN-TIQ- 263 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECTTCC---EEEEECSS-T-TCCEEEEEECSTTCEEEEETTTTEEEEECT-TS-CEE-
T ss_pred eEEECCCCCEEEEccCCCEEEEEcCCCc---EEEEECCC-C-CCCceEEEECCCCCEEEeccCCCeEEEECC-CC-cEE-
Confidence 9999999999999999999999999543 33343332 1 456999999999999999865577877765 33 111
Q ss_pred EeeeecCC-CCCcceEEEEe-CCeEEEEec
Q 039428 289 VVAKFNGP-THRVATAATVK-DGRVYLSHL 316 (335)
Q Consensus 289 ~~~~~~~p-~~~~Pt~va~~-~g~lyV~~~ 316 (335)
.+..+ ....|.+++++ +|+|||+..
T Consensus 264 ---~~~~~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 264 ---EYQLQTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp ---EEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred ---EEECCccCCccceeEeCCCCCEEEEcc
Confidence 12112 24558899997 899999764
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-19 Score=165.12 Aligned_cols=232 Identities=14% Similarity=0.202 Sum_probs=158.1
Q ss_pred cCCCcceeeeEEcCCC-CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC
Q 039428 45 HSPSFLCETAKWDDVG-RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 45 ~~~~~~pegia~d~~g-~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
.....++|+++|++++ .+||++...++|+++|+.+++ .. ....+ ..+.++++++ +|++|++..
T Consensus 45 ~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~-----~~---~~~~~----~~v~~i~~~~-dg~l~v~~~--- 108 (326)
T 2ghs_A 45 ETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGR-----KT---VHALP----FMGSALAKIS-DSKQLIASD--- 108 (326)
T ss_dssp CSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE-----EE---EEECS----SCEEEEEEEE-TTEEEEEET---
T ss_pred ccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc-----EE---EEECC----CcceEEEEeC-CCeEEEEEC---
Confidence 3344589999999974 466666778999999964333 12 22223 2578999996 799999641
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC------CCeEEEEccCCcEEEEecCCcccc
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV------SSKIWKVGVEGQLLSIIRSPLFTA 197 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~------~~~I~~~d~~g~~~~~~~~~~~~~ 197 (335)
..|+++|+++++......... ......++++++|++|++|+++.. .+.|++++ +++...+..
T Consensus 109 ----~gl~~~d~~~g~~~~~~~~~~-~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~------ 176 (326)
T 2ghs_A 109 ----DGLFLRDTATGVLTLHAELES-DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFA------ 176 (326)
T ss_dssp ----TEEEEEETTTCCEEEEECSST-TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEE------
T ss_pred ----CCEEEEECCCCcEEEEeeCCC-CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeC------
Confidence 359999998887654333311 112467899999999999998753 47899999 765543211
Q ss_pred ccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCC--CC-c-eeEEEE-eccCCcCCCCCCeEEEcCCCcEEEEecC
Q 039428 198 KEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIR--KE-E-EEVKLI-ELRGGSSLSLGDGLALLSPTKLVVAGNP 271 (335)
Q Consensus 198 ~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~--~~-~-~~~~~~-~~~g~~~~~~pdGia~d~~g~l~va~~~ 271 (335)
....++++++++|| .||+++...++|++++.+ ++ . ...+.+ ...+ . ...|+|+++|++|++|++..+
T Consensus 177 -----~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~-~-~~~p~gi~~d~~G~lwva~~~ 249 (326)
T 2ghs_A 177 -----DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG-I-KGGMDGSVCDAEGHIWNARWG 249 (326)
T ss_dssp -----EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT-S-SSEEEEEEECTTSCEEEEEET
T ss_pred -----CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCC-C-CCCCCeeEECCCCCEEEEEeC
Confidence 12348999999999 799999999999999985 22 1 011223 2221 1 245899999999999999764
Q ss_pred CCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe---CCeEEEEecc
Q 039428 272 YPSARLVESSDGWETASVVAKFNGPTHRVATAATVK---DGRVYLSHLL 317 (335)
Q Consensus 272 ~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~---~g~lyV~~~~ 317 (335)
.+++.+++. ++ +....+..|. ..|+++++. +++|||+...
T Consensus 250 ~~~v~~~d~-~g----~~~~~i~~~~-~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 250 EGAVDRYDT-DG----NHIARYEVPG-KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp TTEEEEECT-TC----CEEEEEECSC-SBEEEEEEESTTSCEEEEEEBC
T ss_pred CCEEEEECC-CC----CEEEEEECCC-CCcEEEEEecCCCCEEEEEecC
Confidence 467777765 33 2233344443 458899995 3689996543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-20 Score=169.32 Aligned_cols=225 Identities=16% Similarity=0.130 Sum_probs=154.2
Q ss_pred hhhhhhhhhhcCCCce--eEEE-cCCCcceeeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC
Q 039428 25 IISIELAIAMAKPATH--VYQY-HSPSFLCETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG 100 (335)
Q Consensus 25 ~~~~~~~~~~~d~~~~--~~~~-~~~~~~pegia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~ 100 (335)
+++.+..|...+.... ...+ ......|.+++|+++ +.+||++...++|++++.. +.. ..+ .++. .++
T Consensus 8 l~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~-g~~----~~~-~~~~-~~l-- 78 (318)
T 3sov_A 8 LYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFN-KTE----SVQ-NVVV-SGL-- 78 (318)
T ss_dssp EEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETT-SSS----CCC-EEEE-ECC--
T ss_pred EEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEcc-CCC----ceE-EEEc-CCC--
Confidence 3444555555544432 1111 111235789999985 5566666888999999864 431 111 1221 222
Q ss_pred CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCC-CCeEE
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVV-SSKIW 178 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~-~~~I~ 178 (335)
..|.||++|+.+++||+ +|... ++|.++++++........ .....|+++++|+. |.+|++|+. .++|+
T Consensus 79 ~~p~glavd~~~g~ly~--~d~~~---~~I~~~~~dG~~~~~l~~-----~~~~~P~giavdp~~g~ly~td~~~~~~I~ 148 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYW--TDSET---NRIEVSNLDGSLRKVLFW-----QELDQPRAIALDPSSGFMYWTDWGEVPKIE 148 (318)
T ss_dssp SCCCEEEEETTTTEEEE--EETTT---TEEEEEETTSCSCEEEEC-----SSCSSEEEEEEEGGGTEEEEEECSSSCEEE
T ss_pred CCccEEEEEcCCCeEEE--EECCC---CEEEEEECCCCcEEEEEe-----CCCCCccEEEEeCCCCEEEEEecCCCCEEE
Confidence 37899999976899999 45543 369999998764432221 12678999999985 789999975 79999
Q ss_pred EEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeE
Q 039428 179 KVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGL 257 (335)
Q Consensus 179 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGi 257 (335)
+++++|+..+.+... ....||||++|+++ +||++|+.+++|+++++++. ..+.+. .+ . +..|+|+
T Consensus 149 r~~~dG~~~~~~~~~---------~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~--~~~~~~-~~-~-~~~P~gl 214 (318)
T 3sov_A 149 RAGMDGSSRFIIINS---------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT--NRQAVV-KG-S-LPHPFAL 214 (318)
T ss_dssp EEETTSCSCEEEECS---------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEE-CS-C-CSCEEEE
T ss_pred EEEcCCCCeEEEEEC---------CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC--ceEEEe-cC-C-CCCceEE
Confidence 999998755433221 23459999999855 99999999999999999976 344443 22 2 5679999
Q ss_pred EEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 258 ALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 258 a~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
+++. +.+|++++..+++.+++..++
T Consensus 215 av~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 215 TLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp EEET-TEEEEEETTTTEEEEEETTTC
T ss_pred EEeC-CEEEEEecCCCeEEEEECCCC
Confidence 9984 688999887677877776544
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-18 Score=155.15 Aligned_cols=234 Identities=10% Similarity=0.044 Sum_probs=165.9
Q ss_pred EEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEec
Q 039428 42 YQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD 121 (335)
Q Consensus 42 ~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D 121 (335)
+.++.....|.+++++++|++|+.+..++.|+++|+. +. +.. + ..+. ....|.+|++|+ +|++|++.
T Consensus 8 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-----~~~--~-~~~~-~~~~~~~i~~~~-~g~l~v~~-- 74 (299)
T 2z2n_A 8 LNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-----ITE--Y-PLPT-PDAKVMCLTISS-DGEVWFTE-- 74 (299)
T ss_dssp EECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-----EEE--E-ECSS-TTCCEEEEEECT-TSCEEEEE--
T ss_pred EcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-----eEE--e-cCCc-ccCceeeEEECC-CCCEEEeC--
Confidence 4445555679999999999988877667899999854 54 221 2 1221 124789999996 89999953
Q ss_pred CCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccc
Q 039428 122 VLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWY 201 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~ 201 (335)
... +.|.++|+++ +... ...+ . ....|+++++|++|++|+++...+.|+++|++++.......
T Consensus 75 ~~~---~~i~~~~~~g-~~~~-~~~~--~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~--------- 137 (299)
T 2z2n_A 75 NAA---NKIGRITKKG-IIKE-YTLP--N-PDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELP--------- 137 (299)
T ss_dssp TTT---TEEEEECTTS-CEEE-EECS--S-TTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECS---------
T ss_pred CCC---CeEEEECCCC-cEEE-EeCC--C-cCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCC---------
Confidence 222 3599999874 3331 2221 1 25689999999999999999889999999997766542110
Q ss_pred ccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 202 KNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.....|++|+++++|+||+++..++.|+++++ .+ ....+.... . ...|.++++|++|++|+++...+.+.+++.
T Consensus 138 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g--~~~~~~~~~-~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~- 211 (299)
T 2z2n_A 138 NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SG--DITEFKIPT-P-ASGPVGITKGNDDALWFVEIIGNKIGRITT- 211 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC--CEEEEECSS-T-TCCEEEEEECTTSSEEEEETTTTEEEEECT-
T ss_pred CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CC--cEEEeeCCC-C-CCcceeEEECCCCCEEEEccCCceEEEECC-
Confidence 02345899999999999999999999999999 43 344443332 1 456999999999999999865577887776
Q ss_pred CCcEEEEEeeeecCC-CCCcceEEEEe-CCeEEEEec
Q 039428 282 DGWETASVVAKFNGP-THRVATAATVK-DGRVYLSHL 316 (335)
Q Consensus 282 ~~~~~~~~~~~~~~p-~~~~Pt~va~~-~g~lyV~~~ 316 (335)
++. ... +..+ ....|.+++++ +|+|||+..
T Consensus 212 ~g~-~~~----~~~~~~~~~~~~i~~~~~g~l~v~~~ 243 (299)
T 2z2n_A 212 SGE-ITE----FKIPTPNARPHAITAGAGIDLWFTEW 243 (299)
T ss_dssp TCC-EEE----EECSSTTCCEEEEEECSTTCEEEEET
T ss_pred CCc-EEE----EECCCCCCCceeEEECCCCCEEEecc
Confidence 431 111 1112 34568899996 789999763
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-19 Score=160.40 Aligned_cols=251 Identities=19% Similarity=0.232 Sum_probs=166.5
Q ss_pred hhhcCCCceeEEEcCCCcceeeeEEcCCCCEEEE-------EecCCeEEEEECCCCCCCcceeeeeEEeecCCc--CCCC
Q 039428 32 IAMAKPATHVYQYHSPSFLCETAKWDDVGRRFLV-------SFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDV--VGNA 102 (335)
Q Consensus 32 ~~~~d~~~~~~~~~~~~~~pegia~d~~g~~~~~-------~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~--~~~~ 102 (335)
|.+.++.... +......|++++|+++|++|++ +..++.|+++|+.+++ +. .+. .+.. ....
T Consensus 3 i~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~-----~~--~~~-~~~~~~~~~~ 72 (314)
T 1pjx_A 3 IPVIEPLFTK--VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK-----KT--VIC-KPEVNGYGGI 72 (314)
T ss_dssp SCEECCCCEE--EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC-----EE--EEE-CCEETTEECC
T ss_pred cccccHhHhh--hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc-----EE--EEE-ecccCCCCCC
Confidence 3344554443 3455568999999999999888 5567899999854554 22 121 2110 1146
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEE-eecCCCccCCCCCCceeECCCCcEEEEeCCC-------
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFL-TQLSGKSEEKSTADDIAVDAEGNAYVTDVVS------- 174 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~------- 174 (335)
+.++++++++|+||++. .. ..|.+||++ ++.... .... .......|+++++|++|++|+++...
T Consensus 73 ~~~i~~~~~~g~l~v~~--~~----~~l~~~d~~-g~~~~~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 144 (314)
T 1pjx_A 73 PAGCQCDRDANQLFVAD--MR----LGLLVVQTD-GTFEEIAKKDS-EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY 144 (314)
T ss_dssp EEEEEECSSSSEEEEEE--TT----TEEEEEETT-SCEEECCSBCT-TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC
T ss_pred CceEEEecCCCcEEEEE--CC----CCEEEEeCC-CCEEEEEeccC-CCccccCCcCEEECCCCCEEEEecCcccccccc
Confidence 89999997339999954 22 359999998 665432 2211 11224679999999999999998765
Q ss_pred --------CeEEEEccCCcEEEEecCCccccccccccccccCeEEEc----cCC-eEEEEECCCCEEEEEeCCC-Cc-ee
Q 039428 175 --------SKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYH----PDG-FLIVIHMCSGNLFKIDIRK-EE-EE 239 (335)
Q Consensus 175 --------~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~----~dg-~Lyvad~~~~~v~~~d~~~-~~-~~ 239 (335)
+.|++++++++...... ....|++++++ +|| .||+++..+++|++++++. ++ ..
T Consensus 145 ~~~~~~~~~~l~~~~~~g~~~~~~~-----------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~ 213 (314)
T 1pjx_A 145 TRSMQEKFGSIYCFTTDGQMIQVDT-----------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN 213 (314)
T ss_dssp CBTTSSSCEEEEEECTTSCEEEEEE-----------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE
T ss_pred cccccCCCCeEEEECCCCCEEEecc-----------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc
Confidence 78999999876544221 12348999999 999 8999999999999999762 31 01
Q ss_pred EEEE-eccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe-CCe-EEEEec
Q 039428 240 VKLI-ELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK-DGR-VYLSHL 316 (335)
Q Consensus 240 ~~~~-~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~-~g~-lyV~~~ 316 (335)
.+.+ ...+ ..+..|+++++|++|++|+++...+.+.+++...+ +....+..+ ...|++++++ +++ |||+..
T Consensus 214 ~~~~~~~~~-~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g----~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~ 287 (314)
T 1pjx_A 214 KKVWGHIPG-THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG----QPKMRIRCP-FEKPSNLHFKPQTKTIFVTEH 287 (314)
T ss_dssp EEEEEECCC-CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB----SCSEEEECS-SSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCC-CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC----cEeEEEeCC-CCCceeEEECCCCCEEEEEeC
Confidence 1222 2222 11145899999999999999764467777765423 112223233 2568899995 555 999654
Q ss_pred c
Q 039428 317 L 317 (335)
Q Consensus 317 ~ 317 (335)
.
T Consensus 288 ~ 288 (314)
T 1pjx_A 288 E 288 (314)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-19 Score=168.72 Aligned_cols=248 Identities=17% Similarity=0.104 Sum_probs=163.0
Q ss_pred hhhhhhhhhhcCCCceeE-EEcCCCcceeeeEEcCCCC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCC
Q 039428 25 IISIELAIAMAKPATHVY-QYHSPSFLCETAKWDDVGR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNA 102 (335)
Q Consensus 25 ~~~~~~~~~~~d~~~~~~-~~~~~~~~pegia~d~~g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~ 102 (335)
+++....|...+...... .+......|.+++||+.++ +||++..+++|++++. ++........ .++ ...+ ..
T Consensus 87 l~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~-~g~~~~~~~~--~~~-~~~~--~~ 160 (400)
T 3p5b_L 87 FFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL-DRAHGVSSYD--TVI-SRDI--QA 160 (400)
T ss_dssp EEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------CCCE--EEE-CSSC--SC
T ss_pred EEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEc-ccCCCCCcce--EEE-eCCC--CC
Confidence 334455555555544322 2223345799999998654 5555577899999985 4420000011 132 2222 47
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCC-CCeEEEE
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVV-SSKIWKV 180 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~-~~~I~~~ 180 (335)
|.||++|..+++||+ +|... ++|.++|+++......... .+..|++|++|| +|++|++|+. .++|+++
T Consensus 161 p~glavD~~~~~lY~--~d~~~---~~I~~~~~~g~~~~~l~~~-----~~~~P~~iavdp~~g~ly~td~~~~~~I~~~ 230 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYW--TDSVL---GTVSVADTKGVKRKTLFRE-----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 230 (400)
T ss_dssp EEEEEEETTTTEEEE--EETTT---TEEEEECTTTCSEEEEEEC-----SSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred cccEEEEecCCceEE--EECCC---CeEEEEeCCCCceEEEEeC-----CCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence 899999976899999 46544 3699999987755433321 267899999998 5789999986 5899999
Q ss_pred ccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEE
Q 039428 181 GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLAL 259 (335)
Q Consensus 181 d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~ 259 (335)
+++|...+.+... ....|+||++|+++ +||++|...++|+++|+++. ..+.+.... ..+..|.||++
T Consensus 231 ~~dG~~~~~~~~~---------~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~--~~~~~~~~~-~~l~~P~gl~v 298 (400)
T 3p5b_L 231 GLNGVDIYSLVTE---------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILEDE-KRLAHPFSLAV 298 (400)
T ss_dssp ETTSCSCEEEECS---------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--CCEEEEECS-STTSSEEEEEE
T ss_pred eCCCCccEEEEEC---------CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC--ccEEEEeCC-CCCCCCEEEEE
Confidence 9998765443221 23459999999865 99999999999999999986 334432222 22677999999
Q ss_pred cCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEE
Q 039428 260 LSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATV 306 (335)
Q Consensus 260 d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~ 306 (335)
+ .+.+|++++..++|.+++..++.....+.. ....|.++++
T Consensus 299 ~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~-----~~~~p~~i~v 339 (400)
T 3p5b_L 299 F-EDKVFWTDIINEAIFSANRLTGSDVNLLAE-----NLLSPEDMVL 339 (400)
T ss_dssp E-TTEEEEEESSSCSEEEEESSSCCCCEEEEC-----SCSCEEEEEE
T ss_pred e-CCEEEEecCCCCeEEEEEcCCCCceEEEec-----CCCCCceEEE
Confidence 6 468999988667787777544422222221 1234677766
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-19 Score=165.93 Aligned_cols=216 Identities=11% Similarity=0.075 Sum_probs=147.9
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCC------cCCCCcceEEEeCCCCeEEEEEecC
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDD------VVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~------~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
..|.+++++++|++|+++..+++|++++. ++... .+. .+...+ .....|.+|++++++++|||+ |.
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~-~g~~~--~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~--d~ 162 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDP-HSKEG--PLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS--DG 162 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECT-TCSSC--CSE---EESBTTBCCCSTTCCSSEEEEEECTTTCCEEEE--EC
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeC-CCCeE--EEE---EecccCCCCCCccccCCCcEEEEeCCCCeEEEE--eC
Confidence 37999999999998877777899999985 55410 011 121111 111469999999768999994 53
Q ss_pred -CCCccceEEEEECCCCeEEEE-eecCC----CccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccC-CcEEEEecCCc
Q 039428 123 -LGNKYSALAAYDLSTWKRLFL-TQLSG----KSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVE-GQLLSIIRSPL 194 (335)
Q Consensus 123 -~~~~~~~v~~~d~~~~~~~~~-~~~~~----~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~ 194 (335)
.. ++|.+||+++..+... ..... ++ .+..|+++++|++ |++||+|..+++|.+++++ |+....+..+.
T Consensus 163 ~~~---~~I~~~~~~g~~~~~~~~~g~~~~~~~~-~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 163 YCN---SRIVQFSPSGKFVTQWGEESSGSSPRPG-QFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp SSC---CEEEEECTTSCEEEEECEECCSSSCCTT-EESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT
T ss_pred CCC---CeEEEEcCCCCEEEEeccCCCCCCCCCc-ccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc
Confidence 23 4699999765433321 11111 11 2678999999998 8999999999999999998 88776553221
Q ss_pred cccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCe
Q 039428 195 FTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPS 274 (335)
Q Consensus 195 ~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~ 274 (335)
... ........| |++++.+|++|+++..+++|++++...++ ....+.... ..+..|.+++++++|++||++...++
T Consensus 239 ~~~-~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~-~~~~~~~~~-~~~~~p~~ia~~~dG~lyvad~~~~~ 314 (329)
T 3fvz_A 239 FGR-NVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGE-IIDVFKPVR-KHFDMPHDIVASEDGTVYIGDAHTNT 314 (329)
T ss_dssp TTT-CEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCC-EEEEECCSS-SCCSSEEEEEECTTSEEEEEESSSCC
T ss_pred cCC-CcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCe-EEEEEcCCC-CccCCeeEEEECCCCCEEEEECCCCE
Confidence 110 000001123 56666688888888888999999987764 555553211 23677999999999999999887788
Q ss_pred EEEEEc
Q 039428 275 ARLVES 280 (335)
Q Consensus 275 ~~v~~~ 280 (335)
+++++.
T Consensus 315 I~~~~~ 320 (329)
T 3fvz_A 315 VWKFTL 320 (329)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 888775
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-19 Score=165.86 Aligned_cols=210 Identities=14% Similarity=0.134 Sum_probs=151.1
Q ss_pred CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCC
Q 039428 69 DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSG 148 (335)
Q Consensus 69 ~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~ 148 (335)
.+.|.+++. ++.. +. .++ ... ..|.|+++|+.+++||+ .|...+ +|++++++++.......
T Consensus 95 ~~~I~~i~~-~~~~----~~--~~~--~~~--~~~~gl~~d~~~~~ly~--~D~~~~---~I~r~~~~g~~~~~~~~--- 155 (386)
T 3v65_B 95 RIDIRQVLP-HRSE----YT--LLL--NNL--ENAIALDFHHRRELVFW--SDVTLD---RILRANLNGSNVEEVVS--- 155 (386)
T ss_dssp BSCEEEECT-TSCC----CE--EEE--CSC--SCEEEEEEETTTTEEEE--EETTTT---EEEEEETTSCCEEEEEC---
T ss_pred Cccceeecc-CCCc----EE--EEe--cCC--CccEEEEEecCCCeEEE--EeCCCC---cEEEEecCCCCcEEEEe---
Confidence 468999985 4431 12 122 222 37899999977899999 565543 59999998876543222
Q ss_pred CccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccC-CeEEEEECCC-
Q 039428 149 KSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD-GFLIVIHMCS- 225 (335)
Q Consensus 149 ~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d-g~Lyvad~~~- 225 (335)
.+...|+++++|+ .|++|++|...++|++++++|+..+.+... .+..|+||+++|+ |+||++|...
T Consensus 156 --~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~---------~l~~P~giavdp~~g~ly~td~~~~ 224 (386)
T 3v65_B 156 --TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ---------SLEKPRAIALHPMEGTIYWTDWGNT 224 (386)
T ss_dssp --SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECS---------SCSCEEEEEEETTTTEEEEEECSSS
T ss_pred --CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC---------CCCCCcEEEEEcCCCeEEEeccCCC
Confidence 1257899999997 578999999999999999998764433221 2345999999985 5999999998
Q ss_pred CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC-CCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEE
Q 039428 226 GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS-PTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAA 304 (335)
Q Consensus 226 ~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~-~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~v 304 (335)
++|+|+++++. ..+.+...+ +..|.||++|+ +++||+++...+.|++++.+..... .+.. .....|.++
T Consensus 225 ~~I~r~~~dG~--~~~~~~~~~---~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~----~~~~~P~gi 294 (386)
T 3v65_B 225 PRIEASSMDGS--GRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-AVIS----QGLPHPFAI 294 (386)
T ss_dssp CEEEEEETTSC--SCEEEECSS---CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE-EEEC----SSCSSEEEE
T ss_pred CEEEEEeCCCC--CcEEEEECC---CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE-EEEE----CCCCCceEE
Confidence 99999999986 333332222 56799999995 5789999887778888876432211 1211 125578999
Q ss_pred EEeCCeEEEEeccC
Q 039428 305 TVKDGRVYLSHLLG 318 (335)
Q Consensus 305 a~~~g~lyV~~~~~ 318 (335)
++.+++||++++..
T Consensus 295 av~~~~ly~td~~~ 308 (386)
T 3v65_B 295 TVFEDSLYWTDWHT 308 (386)
T ss_dssp EEETTEEEEEETTT
T ss_pred EEECCEEEEeeCCC
Confidence 99999999987643
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-19 Score=163.52 Aligned_cols=222 Identities=14% Similarity=0.126 Sum_probs=155.6
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEE
Q 039428 55 KWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYD 134 (335)
Q Consensus 55 a~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d 134 (335)
+.+++.-+ +++ ..+.|.+++. ++.. .. .++ +.. ..|.|+++|+.+++||+ .|...+ .|++++
T Consensus 40 ~~~~~~~l-l~~-~~~~I~~i~~-~g~~----~~--~~~--~~~--~~~~~l~~d~~~~~ly~--~D~~~~---~I~r~~ 101 (349)
T 3v64_C 40 ALGPEPVL-LFA-NRIDIRQVLP-HRSE----YT--LLL--NNL--ENAIALDFHHRRELVFW--SDVTLD---RILRAN 101 (349)
T ss_dssp ESSSCCEE-EEE-CBSCEEEECT-TSCC----EE--EEE--CSC--SCEEEEEEETTTTEEEE--EETTTT---EEEEEE
T ss_pred ccccCcee-Eee-cccceEEEeC-CCCe----eE--Eee--cCC--CceEEEEEeccccEEEE--EeccCC---ceEEEe
Confidence 44444333 333 2457999985 4541 22 122 222 36899999987899999 565543 599999
Q ss_pred CCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEc
Q 039428 135 LSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYH 213 (335)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~ 213 (335)
++++....... .+...|+++++|+ .|++|++|...++|++++++|+..+.+... .+..|+||+++
T Consensus 102 ~~g~~~~~~~~-----~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~---------~l~~P~~iavd 167 (349)
T 3v64_C 102 LNGSNVEEVVS-----TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ---------SLEKPRAIALH 167 (349)
T ss_dssp TTSCSCEEEEC-----SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT---------TCSCEEEEEEE
T ss_pred cCCCCceEEEe-----CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC---------CCCCcceEEEe
Confidence 98775443221 1257899999997 578999999999999999998764433211 23459999999
Q ss_pred c-CCeEEEEECCC-CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC-CCcEEEEecCCCeEEEEEcCCCcEEEEEe
Q 039428 214 P-DGFLIVIHMCS-GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS-PTKLVVAGNPYPSARLVESSDGWETASVV 290 (335)
Q Consensus 214 ~-dg~Lyvad~~~-~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~-~g~l~va~~~~~~~~v~~~~~~~~~~~~~ 290 (335)
| +|+||++|..+ ++|+|+++++. ..+.+... .+..|.|+++|+ +++||+++...+.|.+++.+..... .+.
T Consensus 168 p~~g~ly~td~~~~~~I~r~~~dG~--~~~~~~~~---~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~-~~~ 241 (349)
T 3v64_C 168 PMEGTIYWTDWGNTPRIEASSMDGS--GRRIIADT---HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-AVI 241 (349)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSC--SCEESCCS---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE
T ss_pred cCcCeEEEeccCCCCEEEEEeCCCC--CcEEEEEC---CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE-EEE
Confidence 8 45999999998 99999999986 33333211 256799999996 5789999887778888876532211 111
Q ss_pred eeecCCCCCcceEEEEeCCeEEEEeccC
Q 039428 291 AKFNGPTHRVATAATVKDGRVYLSHLLG 318 (335)
Q Consensus 291 ~~~~~p~~~~Pt~va~~~g~lyV~~~~~ 318 (335)
. .....|.++++.+++||++++..
T Consensus 242 ~----~~~~~P~giav~~~~ly~td~~~ 265 (349)
T 3v64_C 242 S----QGLPHPFAITVFEDSLYWTDWHT 265 (349)
T ss_dssp C----SSCSSEEEEEEETTEEEEEETTT
T ss_pred e----CCCCCceEEEEECCEEEEecCCC
Confidence 1 12567899999999999987653
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.9e-18 Score=150.48 Aligned_cols=228 Identities=10% Similarity=0.076 Sum_probs=162.4
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
...|.+++++++|++|+.+..++.|+++++ ++. +. ....+. ....|.+|++++ +|++|++. ..+
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-----~~---~~~~~~-~~~~~~~i~~~~-~g~l~v~~--~~~--- 119 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITK-KGI-----IK---EYTLPN-PDSAPYGITEGP-NGDIWFTE--MNG--- 119 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECT-TSC-----EE---EEECSS-TTCCEEEEEECT-TSCEEEEE--TTT---
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECC-CCc-----EE---EEeCCC-cCCCceeeEECC-CCCEEEEe--cCC---
Confidence 456899999999998888766789999985 454 22 222231 234789999996 78999953 322
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
..|.++|+ +++.... ... . ....|+++++|++|++|+++...+.|++++++++...... . .....|
T Consensus 120 ~~i~~~d~-~g~~~~~-~~~--~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~----~-----~~~~~~ 185 (299)
T 2z2n_A 120 NRIGRITD-DGKIREY-ELP--N-KGSYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKI----P-----TPASGP 185 (299)
T ss_dssp TEEEEECT-TCCEEEE-ECS--S-TTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEC----S-----STTCCE
T ss_pred ceEEEECC-CCCEEEe-cCC--C-CCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEeeC----C-----CCCCcc
Confidence 36999999 5544422 121 1 1567899999999999999998899999999776654211 0 023458
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEE
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETA 287 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~ 287 (335)
++|+++++|+||+++...+.|+++++ .+ ....+.... ....|.++++|++|++|+++...+.+.+++. ++ ...
T Consensus 186 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g--~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g-~~~ 258 (299)
T 2z2n_A 186 VGITKGNDDALWFVEIIGNKIGRITT-SG--EITEFKIPT--PNARPHAITAGAGIDLWFTEWGANKIGRLTS-NN-IIE 258 (299)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TC--CEEEEECSS--TTCCEEEEEECSTTCEEEEETTTTEEEEEET-TT-EEE
T ss_pred eeEEECCCCCEEEEccCCceEEEECC-CC--cEEEEECCC--CCCCceeEEECCCCCEEEeccCCceEEEECC-CC-ceE
Confidence 99999999999999999999999999 44 344444332 1456999999999999999765577888876 33 211
Q ss_pred EEeeeecCC-CCCcceEEEEeCCeEEEEec
Q 039428 288 SVVAKFNGP-THRVATAATVKDGRVYLSHL 316 (335)
Q Consensus 288 ~~~~~~~~p-~~~~Pt~va~~~g~lyV~~~ 316 (335)
.+..+ ....|.++++.+|+||++..
T Consensus 259 ----~~~~~~~~~~~~~i~~~~g~l~v~~~ 284 (299)
T 2z2n_A 259 ----EYPIQIKSAEPHGICFDGETIWFAME 284 (299)
T ss_dssp ----EEECSSSSCCEEEEEECSSCEEEEET
T ss_pred ----EEeCCCCCCccceEEecCCCEEEEec
Confidence 12112 23457888887899999764
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-19 Score=168.56 Aligned_cols=240 Identities=9% Similarity=0.119 Sum_probs=159.8
Q ss_pred cceeeeEEcC--CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 49 FLCETAKWDD--VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 49 ~~pegia~d~--~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
..|.++++|| ++++|+++.. ++|+++|.. +.. +. .+. + .+..|.+|++|++++.||++ |..++.
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~-~~~----v~--~~~--~--~~~~P~~ia~d~~G~~lyva--d~~~~~ 202 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFE-KEY----VS--TVY--S--GLSKVRTICWTHEADSMIIT--NDQNNN 202 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBT-EEEEEEETT-TTE----EE--EEE--C--CCSCEEEEEECTTSSEEEEE--ECCSCT
T ss_pred CCCCEEEECCCCCCeEEEEeCC-CcEEEEECC-CCE----EE--EEe--c--CCCCcceEEEeCCCCEEEEE--eCCCCc
Confidence 3799999997 4667666654 899999964 431 22 132 2 22479999999844459995 443221
Q ss_pred -cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 127 -YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 127 -~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
...++.++.++..... ..+ . .+..|+++++|+ +|++||+|..+++|+++++++.....+ +.. +..
T Consensus 203 ~~~~v~~~~~~g~~~~~-~~l---~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~----~~~----~~~ 269 (430)
T 3tc9_A 203 DRPNNYILTRESGFKVI-TEL---T-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL----FTI----QDS 269 (430)
T ss_dssp TSEEEEEEEGGGTSCSE-EEE---E-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE----EEC----SSS
T ss_pred ccceEEEEeCCCceeee-eee---c-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE----EEc----CCC
Confidence 1357778876542211 111 1 167899999999 799999999999999999997765321 111 012
Q ss_pred cccCeEEEccCC-eEEEEECCCCEEEEEeCCCCcee---EEEEecc-C----------CcCCCCCC-eEEEc--------
Q 039428 205 FGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEE---VKLIELR-G----------GSSLSLGD-GLALL-------- 260 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~---~~~~~~~-g----------~~~~~~pd-Gia~d-------- 260 (335)
..|+||+++|+| +||+++..+++|++++.++..+. ...+... + ...+..|. |++++
T Consensus 270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D 349 (430)
T 3tc9_A 270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSS 349 (430)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSS
T ss_pred CcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccC
Confidence 359999999999 59999999999999998863101 2233211 1 11256788 89984
Q ss_pred CCCcEEEEecCCCeEEEEEcCCCcEEEEEeee----ecC---------CCCCcceEEEEe--CCeEEEEecc
Q 039428 261 SPTKLVVAGNPYPSARLVESSDGWETASVVAK----FNG---------PTHRVATAATVK--DGRVYLSHLL 317 (335)
Q Consensus 261 ~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~----~~~---------p~~~~Pt~va~~--~g~lyV~~~~ 317 (335)
++|+|||++.+.++++++.. ++ ....+.+. ..+ ..+..|.+++++ +++|||++..
T Consensus 350 ~~g~lyvaD~~n~~I~~i~~-~G-~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 419 (430)
T 3tc9_A 350 DEYDFYFCDRENHCIRILTP-QG-RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRE 419 (430)
T ss_dssp CCEEEEEEEGGGTEEEEECT-TS-EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred CCCeEEEEECCCcEEEEECC-CC-cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECC
Confidence 56899999876677877763 44 33333332 111 126789999997 5999998754
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-18 Score=159.04 Aligned_cols=241 Identities=16% Similarity=0.192 Sum_probs=161.4
Q ss_pred EcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC
Q 039428 44 YHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 44 ~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
+......|++++|+++|++|+++..++.|+++|..+++ .. .+.... ...+.+|++++ +|++|++.....
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-----~~--~~~~~~---~~~~~~i~~~~-dg~l~v~~~~~~ 108 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-----IK--RPFVSH---KANPAAIKIHK-DGRLFVCYLGDF 108 (333)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----EE--EEEECS---SSSEEEEEECT-TSCEEEEECTTS
T ss_pred EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-----EE--EEeeCC---CCCcceEEECC-CCcEEEEeCCCC
Confidence 44445578999999999988887778899999864443 22 122111 24689999997 789999643210
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC------CCeEEEEccCCcEEEEecCCcccc
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV------SSKIWKVGVEGQLLSIIRSPLFTA 197 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~------~~~I~~~d~~g~~~~~~~~~~~~~ 197 (335)
.. ...|++||+++++....... .. ....|+++++|++|++|+++.. .+.|++++++++....+..
T Consensus 109 ~~-~~~i~~~d~~~~~~~~~~~~--~~-~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----- 179 (333)
T 2dg1_A 109 KS-TGGIFAATENGDNLQDIIED--LS-TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ----- 179 (333)
T ss_dssp SS-CCEEEEECTTSCSCEEEECS--SS-SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-----
T ss_pred CC-CceEEEEeCCCCEEEEEEcc--Cc-cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-----
Confidence 00 13699999998765522221 11 1467899999999999999875 5789999998643332110
Q ss_pred ccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEE------eccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 198 KEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLI------ELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 198 ~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~------~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
....++++++++|| .||+++..+++|++++++..+.....+ ...+ ...|+++++|++|++|++..
T Consensus 180 -----~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~---~~~~~~i~~d~~G~l~v~~~ 251 (333)
T 2dg1_A 180 -----NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG---HEGPDSCCIDSDDNLYVAMY 251 (333)
T ss_dssp -----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS---SSEEEEEEEBTTCCEEEEEE
T ss_pred -----CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC---CCCCCceEECCCCCEEEEEc
Confidence 12348999999999 699999989999999995421022211 1111 13599999999999999976
Q ss_pred CCCeEEEEEcCCCcEEEEEeeeecCCCC-----CcceEEEEe--CCeEEEEecc
Q 039428 271 PYPSARLVESSDGWETASVVAKFNGPTH-----RVATAATVK--DGRVYLSHLL 317 (335)
Q Consensus 271 ~~~~~~v~~~~~~~~~~~~~~~~~~p~~-----~~Pt~va~~--~g~lyV~~~~ 317 (335)
..+.+.+++. ++. ....+..+.. ..|+++++. +++|||+...
T Consensus 252 ~~~~v~~~d~-~g~----~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 252 GQGRVLVFNK-RGY----PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp TTTEEEEECT-TSC----EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCEEEEECC-CCC----EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 4467887765 331 2223333321 268899995 4689996544
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.8e-19 Score=156.88 Aligned_cols=200 Identities=12% Similarity=0.070 Sum_probs=146.3
Q ss_pred cceeeeEE-cCCCCEEEEEec-CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 49 FLCETAKW-DDVGRRFLVSFL-DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 49 ~~pegia~-d~~g~~~~~~~~-~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
..|.++++ +++|++|+++.. +++|+++| .+++. +. .+.... ...|.+|++++ +|++||+ +...
T Consensus 77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~----~~---~~~~~~--~~~~~~i~~~~-~g~l~v~--~~~~-- 141 (286)
T 1q7f_A 77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQF----VR---KFGATI--LQHPRGVTVDN-KGRIIVV--ECKV-- 141 (286)
T ss_dssp SSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCE----EE---EECTTT--CSCEEEEEECT-TSCEEEE--ETTT--
T ss_pred cCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcE----EE---EecCcc--CCCceEEEEeC-CCCEEEE--ECCC--
Confidence 46899999 577877777643 78999998 55651 22 221221 24789999997 7899995 4332
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
+.|.+||+++.... ..... .....|+++++|++|++||+++.+++|++++++|+....+... .....
T Consensus 142 -~~i~~~~~~g~~~~-~~~~~---~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~--------g~~~~ 208 (286)
T 1q7f_A 142 -MRVIIFDQNGNVLH-KFGCS---KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGE--------GITNY 208 (286)
T ss_dssp -TEEEEECTTSCEEE-EEECT---TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCT--------TTSCS
T ss_pred -CEEEEEcCCCCEEE-EeCCC---CccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccC--------CccCC
Confidence 36999998754333 22221 1256899999999999999999999999999998876544321 11245
Q ss_pred cCeEEEccCCeEEEEECCCC-EEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 207 LNGIVYHPDGFLIVIHMCSG-NLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~-~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
|.+|+++++|+|||++..++ +|.+++.++. ....+.... . ...|.+++++++|++||++. .+.+++++..
T Consensus 209 p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~--~~~~~~~~~-~-~~~~~~i~~~~~g~l~vs~~-~~~v~v~~~~ 279 (286)
T 1q7f_A 209 PIGVGINSNGEILIADNHNNFNLTIFTQDGQ--LISALESKV-K-HAQCFDVALMDDGSVVLASK-DYRLYIYRYV 279 (286)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECTTSC--EEEEEEESS-C-CSCEEEEEEETTTEEEEEET-TTEEEEEECS
T ss_pred CcEEEECCCCCEEEEeCCCCEEEEEECCCCC--EEEEEcccC-C-CCcceeEEECCCCcEEEECC-CCeEEEEEcc
Confidence 89999999999999999886 9999998766 566665432 1 34588999999999999965 4778887754
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-19 Score=169.84 Aligned_cols=238 Identities=12% Similarity=0.061 Sum_probs=159.8
Q ss_pred hhhhhhhhh---hhhhhhcCCCceeEEE-----------cCCCcceeeeEEcCCCCEEEEEecC----CeEEEEECCCCC
Q 039428 20 IPIAYIISI---ELAIAMAKPATHVYQY-----------HSPSFLCETAKWDDVGRRFLVSFLD----GGVGQVLVPDEY 81 (335)
Q Consensus 20 ~p~~~~~~~---~~~~~~~d~~~~~~~~-----------~~~~~~pegia~d~~g~~~~~~~~~----~~I~~~d~~~g~ 81 (335)
.|.+++++. .+.++|+|.. +++.. ......|.+++++++|++|+++..+ ..++.++. .+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~-~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTR-ASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECG-GGT
T ss_pred CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEEC-CCC
Confidence 477888775 3778888874 33322 1223469999999999976666422 24777764 344
Q ss_pred CCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeE-EEEeecCCCccCCCCCCcee
Q 039428 82 SPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKR-LFLTQLSGKSEEKSTADDIA 160 (335)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~p~~~~ 160 (335)
+ ... ..+ +. ...|+|+++|+.+|+||+ +|... ++|+++|++++.. ....... . ...+++++
T Consensus 218 ~----~~~-~~~--~~--~~~P~giavd~~~G~lyv--~d~~~---~~V~~~d~~~g~~~~~~~~~~---~-~~~~~~ia 279 (433)
T 4hw6_A 218 F----TER-LSL--CN--ARGAKTCAVHPQNGKIYY--TRYHH---AMISSYDPATGTLTEEEVMMD---T-KGSNFHIV 279 (433)
T ss_dssp T----CCE-EEE--EE--CSSBCCCEECTTTCCEEE--CBTTC---SEEEEECTTTCCEEEEEEECS---C-CSSCEEEE
T ss_pred e----ecc-ccc--cc--cCCCCEEEEeCCCCeEEE--EECCC---CEEEEEECCCCeEEEEEeccC---C-CCCcccEE
Confidence 2 110 111 11 257999999976899999 56654 3699999987766 2222221 1 23456799
Q ss_pred ECCCCc-EEEEeCCCCeEEEEccCCc---E---EEEecC---Cccc-cccccccccccCeEEE---------ccCCeEEE
Q 039428 161 VDAEGN-AYVTDVVSSKIWKVGVEGQ---L---LSIIRS---PLFT-AKEWYKNVFGLNGIVY---------HPDGFLIV 220 (335)
Q Consensus 161 vd~~G~-lyV~d~~~~~I~~~d~~g~---~---~~~~~~---~~~~-~~~~~~~~~~p~Gia~---------~~dg~Lyv 220 (335)
+|++|+ +||+|+.+++|++++.++. . ..+.+. ..+. .+.....+..|.||++ +++|+|||
T Consensus 280 ~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyv 359 (433)
T 4hw6_A 280 WHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYF 359 (433)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEE
T ss_pred EeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEE
Confidence 999997 9999999999999987632 1 122222 1111 1112234667999999 88889999
Q ss_pred EECCCCEEEEEeCCCCceeEEEEeccC--------------CcCCCCCCeEEEc-CCCcEEEEecCCCeEEEEEc
Q 039428 221 IHMCSGNLFKIDIRKEEEEVKLIELRG--------------GSSLSLGDGLALL-SPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 221 ad~~~~~v~~~d~~~~~~~~~~~~~~g--------------~~~~~~pdGia~d-~~g~l~va~~~~~~~~v~~~ 280 (335)
+|+.+++|.++++++ .+..+.-.+ ...|..|.||++| ++|+|||++.+.++++.+..
T Consensus 360 aD~~n~~I~~~~~~G---~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 360 CDRDSHTVRVLTPEG---RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EETTTTEEEEECTTS---EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EECCCCEEEEECCCC---CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 999999999999865 344443211 1135679999999 88999999876678887764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-18 Score=153.70 Aligned_cols=221 Identities=14% Similarity=0.186 Sum_probs=150.6
Q ss_pred EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEE
Q 039428 62 RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRL 141 (335)
Q Consensus 62 ~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~ 141 (335)
.++++. .++|++++. ++....+ .+...++..+. ..|.|+++|+++++||+ +|... +.|.++|++++...
T Consensus 3 ~l~~~~-~~~I~~~~~-~g~~~~~-~~~~~~~~~~~---~~~~gi~~d~~~~~ly~--~d~~~---~~I~~~~~~g~~~~ 71 (267)
T 1npe_A 3 HLLFAQ-TGKIERLPL-ERNTMKK-TEAKAFLHIPA---KVIIGLAFDCVDKVVYW--TDISE---PSIGRASLHGGEPT 71 (267)
T ss_dssp EEEEEE-EEEEEEEEE-SSSCBCG-GGCEEEEEEEE---EEEEEEEEETTTTEEEE--EETTT---TEEEEEESSSCCCE
T ss_pred EEEEEc-CCeEEEEEe-cCccccc-ccceeeecCCC---CcEEEEEEecCCCEEEE--EECCC---CEEEEEecCCCCcE
Confidence 344442 358999985 4441000 00001222221 36889999987889999 45543 36999999876543
Q ss_pred EEeecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccC-CeEE
Q 039428 142 FLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD-GFLI 219 (335)
Q Consensus 142 ~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d-g~Ly 219 (335)
.... .+...|+++++|++ |++|++|...++|++++.+|+..+.+... ....|++|+++++ |+||
T Consensus 72 ~~~~-----~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---------~~~~P~~i~vd~~~g~ly 137 (267)
T 1npe_A 72 TIIR-----QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT---------GLVNPRGIVTDPVRGNLY 137 (267)
T ss_dssp EEEC-----TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---------SCSSEEEEEEETTTTEEE
T ss_pred EEEE-----CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEEC---------CCCCccEEEEeeCCCEEE
Confidence 2221 12578999999986 78999999999999999998654322111 1245999999995 6999
Q ss_pred EEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCC-CcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCC
Q 039428 220 VIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSP-TKLVVAGNPYPSARLVESSDGWETASVVAKFNGP 296 (335)
Q Consensus 220 vad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~-g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p 296 (335)
+++.. +++|+++++++. ..+.+...+ +..|.|+++|++ ++||+++...+.+.+++.+.. ..... +.
T Consensus 138 v~~~~~~~~~I~~~~~dg~--~~~~~~~~~---~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~---~~-- 206 (267)
T 1npe_A 138 WTDWNRDNPKIETSHMDGT--NRRILAQDN---LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKV---LE-- 206 (267)
T ss_dssp EEECCSSSCEEEEEETTSC--CCEEEECTT---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEE---EE--
T ss_pred EEECCCCCcEEEEEecCCC--CcEEEEECC---CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEE---ec--
Confidence 99987 689999999876 333333222 467999999986 589999887788888876422 11111 11
Q ss_pred CCCcceEEEEeCCeEEEEeccC
Q 039428 297 THRVATAATVKDGRVYLSHLLG 318 (335)
Q Consensus 297 ~~~~Pt~va~~~g~lyV~~~~~ 318 (335)
.+..|.++++++++|||+++.+
T Consensus 207 ~~~~P~gi~~d~~~lyva~~~~ 228 (267)
T 1npe_A 207 GLQYPFAVTSYGKNLYYTDWKT 228 (267)
T ss_dssp CCCSEEEEEEETTEEEEEETTT
T ss_pred CCCCceEEEEeCCEEEEEECCC
Confidence 3456889999999999987643
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-19 Score=167.91 Aligned_cols=238 Identities=10% Similarity=0.042 Sum_probs=158.4
Q ss_pred hhhhhhhh--hhhhhhhcCCCceeEEE-----------cCCCcceeeeEEcCCCCEEEEE-ecC----CeEEEEECCCCC
Q 039428 20 IPIAYIIS--IELAIAMAKPATHVYQY-----------HSPSFLCETAKWDDVGRRFLVS-FLD----GGVGQVLVPDEY 81 (335)
Q Consensus 20 ~p~~~~~~--~~~~~~~~d~~~~~~~~-----------~~~~~~pegia~d~~g~~~~~~-~~~----~~I~~~d~~~g~ 81 (335)
.|.+++++ .++.++++|.. +++.. ......|.+++++++|+.+|++ ..+ ..++.++. ++.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 57777777 35667777654 33322 1233469999999999955555 432 25777874 455
Q ss_pred CCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeE
Q 039428 82 SPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAV 161 (335)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~v 161 (335)
+ ... ..+ +. ...|+++++|+++|+||+ +|... ++|++||++++......... . ...|+++++
T Consensus 216 ~----~~~-~~l--~~--~~~p~giavdp~~g~lyv--~d~~~---~~V~~~~~~~~~~~~~~~~~---~-~~~P~gia~ 277 (430)
T 3tc9_A 216 F----KVI-TEL--TK--GQNCNGAETHPINGELYF--NSWNA---GQVFRYDFTTQETTPLFTIQ---D-SGWEFHIQF 277 (430)
T ss_dssp S----CSE-EEE--EE--CSSCCCEEECTTTCCEEE--EETTT---TEEEEEETTTTEEEEEEECS---S-SSCCEEEEE
T ss_pred e----eee-eee--cc--CCCceEEEEeCCCCEEEE--EECCC---CEEEEEECCCCcEEEEEEcC---C-CCcceeEEE
Confidence 2 110 111 11 247899999987899999 56544 36999999988663222221 1 467999999
Q ss_pred CCCCc-EEEEeCCCCeEEEEccCCc--E----EEEecC---Cccc-cccccccccccC-eEEEc--------cCCeEEEE
Q 039428 162 DAEGN-AYVTDVVSSKIWKVGVEGQ--L----LSIIRS---PLFT-AKEWYKNVFGLN-GIVYH--------PDGFLIVI 221 (335)
Q Consensus 162 d~~G~-lyV~d~~~~~I~~~d~~g~--~----~~~~~~---~~~~-~~~~~~~~~~p~-Gia~~--------~dg~Lyva 221 (335)
|++|+ +||+|..+++|++++.++. . ..+.+. ..+. .+.....+..|. |++++ ++|+|||+
T Consensus 278 ~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyva 357 (430)
T 3tc9_A 278 HPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFC 357 (430)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEE
Confidence 99998 9999999999999998863 1 122221 1111 011123456798 89984 56899999
Q ss_pred ECCCCEEEEEeCCCCceeEEEEecc------C--------CcCCCCCCeEEEcC-CCcEEEEecCCCeEEEEEc
Q 039428 222 HMCSGNLFKIDIRKEEEEVKLIELR------G--------GSSLSLGDGLALLS-PTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 222 d~~~~~v~~~d~~~~~~~~~~~~~~------g--------~~~~~~pdGia~d~-~g~l~va~~~~~~~~v~~~ 280 (335)
|..+++|.+|++++ .+..+... | ...|..|.|+++|+ +|.|||++.+.++++.+..
T Consensus 358 D~~n~~I~~i~~~G---~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 358 DRENHCIRILTPQG---RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EGGGTEEEEECTTS---EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred ECCCcEEEEECCCC---cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 99999999999765 33333211 1 01256799999999 5899999876677877764
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=181.91 Aligned_cols=248 Identities=18% Similarity=0.108 Sum_probs=163.8
Q ss_pred hhhhhhhhhhcCCCceeEEE-cCCCcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCC
Q 039428 25 IISIELAIAMAKPATHVYQY-HSPSFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNA 102 (335)
Q Consensus 25 ~~~~~~~~~~~d~~~~~~~~-~~~~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~ 102 (335)
+++.+..|.+.+.....+.. ......|.+++|+++++.+|++ ...++|++++.. +...+.... .++ ..++ ..
T Consensus 381 l~~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~-g~~~~~~~~--~~i-~~~~--~~ 454 (699)
T 1n7d_A 381 FFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD-RAHGVSSYD--TVI-SRDI--QA 454 (699)
T ss_dssp CCCCTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESC-CCCC-CCCC--CBC-CSCC----
T ss_pred EecCccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecC-CCCCCcceE--EEE-eCCC--CC
Confidence 33445566666655443332 2233469999999876666665 778999999854 410000001 121 1121 36
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCC-CeEEEE
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVS-SKIWKV 180 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~-~~I~~~ 180 (335)
|.||++|..+++||+ +|...+ +|.++|+++......+. .++..|+++++|++ |+||++|+.. ++|+++
T Consensus 455 P~glavD~~~g~LY~--tD~~~~---~I~v~d~dg~~~~~l~~-----~~~~~P~giavDp~~g~ly~td~~~~~~I~~~ 524 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYW--TDSVLG---TVSVADTKGVKRKTLFR-----EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 524 (699)
T ss_dssp CCCEECCCSSSBCEE--CCTTTS---CEEEEBSSSCCEEEECC-----CSSCCCCCEECCSSSSCCEECCCSSSCCEEBC
T ss_pred cceEEEEeeCCcEEE--EeccCC---eEEEEecCCCceEEEEe-----CCCCCcceEEEccCCCcEEEcccCCCCeEEEE
Confidence 899999966899999 565543 59999998765543322 12578999999985 7899999875 899999
Q ss_pred ccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEE
Q 039428 181 GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLAL 259 (335)
Q Consensus 181 d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~ 259 (335)
+++|...+.+... .+..|+||++++++ +||++|..+++|+++++++. ..+.+.... ..+..|+||++
T Consensus 525 ~~dG~~~~~l~~~---------~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~--~~~~~~~~~-~~~~~P~glav 592 (699)
T 1n7d_A 525 GLNGVDIYSLVTE---------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILEDE-KRLAHPFSLAV 592 (699)
T ss_dssp CSSSCCCCEESCS---------SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS--CCEEECCCS-SSCSSCCCCEE
T ss_pred eCCCCCeeEEEeC---------CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC--ceEEEEecC-CcCCCceEeEE
Confidence 9998755433211 23459999999875 99999999999999999875 344443222 22577999999
Q ss_pred cCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEE
Q 039428 260 LSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATV 306 (335)
Q Consensus 260 d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~ 306 (335)
+.+ .||++++..++|.+++...+ +....+..+ ...|+++++
T Consensus 593 d~~-~lywtd~~~~~V~~~d~~~G----~~~~~i~~~-~~~P~~i~v 633 (699)
T 1n7d_A 593 FED-KVFWTDIINEAIFSANRLTG----SDVNLLAEN-LLSPEDMVL 633 (699)
T ss_dssp ETT-EEEEECSTTTCEEEEETTTE----EEEECCCTT-CSSCCCCCB
T ss_pred ECC-EEEEEeCCCCeEEEEEccCC----CceEEeecC-CCCCcEEEE
Confidence 975 89999886678887775443 233333222 345777766
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-18 Score=163.91 Aligned_cols=249 Identities=10% Similarity=0.083 Sum_probs=159.7
Q ss_pred ceeeeEEcCC--CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEE-------eCCCCeEEEEEe
Q 039428 50 LCETAKWDDV--GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAV-------DRPRNRLLVAFT 120 (335)
Q Consensus 50 ~pegia~d~~--g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~-------d~~~g~l~v~~~ 120 (335)
.|.++++||+ +++|++...+++|+++|..++. +. .++.......++|.+|++ +++.+.||++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-----v~--~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyva-- 210 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-----LS--SPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVA-- 210 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-----EE--EEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEE--
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-----EE--EEEccCccccCCCcEEEEeecccccCCCCCEEEEE--
Confidence 5899999983 5555555656789999964333 23 133322211257999999 9744559994
Q ss_pred cCCCC---ccceEEEEECCC-CeEEE---EeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccC-------Cc
Q 039428 121 DVLGN---KYSALAAYDLST-WKRLF---LTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVE-------GQ 185 (335)
Q Consensus 121 D~~~~---~~~~v~~~d~~~-~~~~~---~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~-------g~ 185 (335)
|..++ ....|+.++.+. +.... ...+ . ....|+++++|+ +|+||++|..+++|+++|++ ++
T Consensus 211 d~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v---~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg 286 (496)
T 3kya_A 211 IDYDGKGDESPSVYIIKRNADGTFDDRSDIQLI---A-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG 286 (496)
T ss_dssp ECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEE---E-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTT
T ss_pred eCCCCCcccCceEEEEecCCCCceeecccceee---c-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCc
Confidence 54431 124688887655 22210 0011 1 156899999999 58999999999999999987 33
Q ss_pred EEEE------ec--CCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeE---EEEecc-C-----
Q 039428 186 LLSI------IR--SPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEV---KLIELR-G----- 247 (335)
Q Consensus 186 ~~~~------~~--~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~---~~~~~~-g----- 247 (335)
.... .+ ...+.. +....|.+||++|+| .|||+|+.+++|+|++.++....+ ..+.-. +
T Consensus 287 ~~~tp~~~~~~g~~~~l~~~----~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~ 362 (496)
T 3kya_A 287 GSWDPIVKNNPNTFKQLFTI----ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYR 362 (496)
T ss_dssp CCCCCBGGGCTTTEEEEEEC----SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCB
T ss_pred eeecccccccccccceeEec----CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCccc
Confidence 3200 00 000111 122348899999999 599999999999999887641121 233211 1
Q ss_pred -----CcCCCCCC-eEEEc-------CCCcEEEEecCCCeEEEEEcCCCcEEEEEeee-------------e-cC-----
Q 039428 248 -----GSSLSLGD-GLALL-------SPTKLVVAGNPYPSARLVESSDGWETASVVAK-------------F-NG----- 295 (335)
Q Consensus 248 -----~~~~~~pd-Gia~d-------~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~-------------~-~~----- 295 (335)
...|..|. |++++ ++|+||||+...++|+++. .++ ...++.+. + .+
T Consensus 363 DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~ 440 (496)
T 3kya_A 363 DDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDLREV 440 (496)
T ss_dssp CCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTT
T ss_pred CCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCchhh
Confidence 12367799 88887 6789999987667888886 344 23344332 0 01
Q ss_pred CCCCcceEEEEe-C-CeEEEEecc
Q 039428 296 PTHRVATAATVK-D-GRVYLSHLL 317 (335)
Q Consensus 296 p~~~~Pt~va~~-~-g~lyV~~~~ 317 (335)
..+..|++++++ + |+|||++..
T Consensus 441 a~f~~P~gIavd~~~g~lyVaD~~ 464 (496)
T 3kya_A 441 ARFRDVSGLVYDDVKEMFYVHDQV 464 (496)
T ss_dssp CCCSSEEEEEEETTTTEEEEEETT
T ss_pred hhcCCCcEEEEECCCCEEEEEeCC
Confidence 137889999997 4 999998754
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-17 Score=153.20 Aligned_cols=211 Identities=14% Similarity=0.176 Sum_probs=147.4
Q ss_pred CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCC----CeEEEEe
Q 039428 69 DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLST----WKRLFLT 144 (335)
Q Consensus 69 ~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~----~~~~~~~ 144 (335)
.+.|.++|....++ . .++ +.. ..|.|+++|+++++||+ +|... +.|+++|+++ .......
T Consensus 9 ~~~I~~i~~~~~~~-----~--~~~--~~~--~~p~g~~~d~~~~~ly~--~D~~~---~~I~~~~~~g~~~~~~~~~~~ 72 (316)
T 1ijq_A 9 RHEVRKMTLDRSEY-----T--SLI--PNL--RNVVALDTEVASNRIYW--SDLSQ---RMICSTQLDRAHGVSSYDTVI 72 (316)
T ss_dssp BSSEEEEETTSCCC-----E--EEE--CSC--SSEEEEEEETTTTEEEE--EETTT---TEEEEEEC--------CEEEE
T ss_pred CCeEEEEECCCcce-----E--ehh--cCC--CceEEEEEEeCCCEEEE--EECCC---CcEEEEECCCCCCCcccEEEE
Confidence 46799998643331 2 132 222 47899999987889999 56544 3699999986 2222111
Q ss_pred ecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEcc-CCeEEEEE
Q 039428 145 QLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHP-DGFLIVIH 222 (335)
Q Consensus 145 ~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~-dg~Lyvad 222 (335)
. .++..|.++++|+ +|++|++|..+++|.+++++|+..+.+... ....|++|+++| +|+||+++
T Consensus 73 ~-----~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~---------~~~~P~~iavdp~~g~ly~~d 138 (316)
T 1ijq_A 73 S-----RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---------NGSKPRAIVVDPVHGFMYWTD 138 (316)
T ss_dssp C-----SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC---------TTCCEEEEEEETTTTEEEEEE
T ss_pred e-----CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC---------CCCCcceEEeCCCCCEEEEEc
Confidence 1 1257899999996 578999999999999999998765433211 234599999998 55999999
Q ss_pred CCC-CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCC-CcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCc
Q 039428 223 MCS-GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSP-TKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRV 300 (335)
Q Consensus 223 ~~~-~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~-g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~ 300 (335)
... ++|+++++++. ..+.+... .+..|.||++|++ ++||+++...+.+.+++.+.... +.+... ......
T Consensus 139 ~~~~~~I~~~~~dG~--~~~~~~~~---~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~--~~~~~~-~~~~~~ 210 (316)
T 1ijq_A 139 WGTPAKIKKGGLNGV--DIYSLVTE---NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--KTILED-EKRLAH 210 (316)
T ss_dssp CSSSCEEEEEETTSC--CEEEEECS---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEEC-TTTTSS
T ss_pred cCCCCeEEEEcCCCC--CeEEEEEC---CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce--EEEeec-CCccCC
Confidence 886 89999999886 44444221 2567999999965 68999988777888888753221 122111 123567
Q ss_pred ceEEEEeCCeEEEEecc
Q 039428 301 ATAATVKDGRVYLSHLL 317 (335)
Q Consensus 301 Pt~va~~~g~lyV~~~~ 317 (335)
|.++++++++||++++.
T Consensus 211 P~giav~~~~ly~~d~~ 227 (316)
T 1ijq_A 211 PFSLAVFEDKVFWTDII 227 (316)
T ss_dssp EEEEEEETTEEEEEETT
T ss_pred cEEEEEECCEEEEEECC
Confidence 99999999999998754
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-18 Score=172.60 Aligned_cols=229 Identities=18% Similarity=0.106 Sum_probs=154.3
Q ss_pred hhhhhhhhhcCCCcee-EEEcCCCcceeeeEEcCCCC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCc
Q 039428 26 ISIELAIAMAKPATHV-YQYHSPSFLCETAKWDDVGR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNAT 103 (335)
Q Consensus 26 ~~~~~~~~~~d~~~~~-~~~~~~~~~pegia~d~~g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p 103 (335)
++....|...+..... ..+......|.++++++..+ +||++...++|++++. ++.... .....++ ...+ ..|
T Consensus 400 ~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l-~g~~~~--~~~~~vi-~~~l--~~P 473 (791)
T 3m0c_C 400 FTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL-DRAHGV--SSYDTVI-SRDI--QAP 473 (791)
T ss_dssp EECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEE-CSSC--SCC
T ss_pred cccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEec-cCCCCC--cceeEEE-ecCC--CCc
Confidence 3344444444433222 22333345689999998644 5555577899999985 442100 0000132 2222 479
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCC-CeEEEEc
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVS-SKIWKVG 181 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~-~~I~~~d 181 (335)
.||++|..+++||+ +|... ++|.++++++......+. ..+..|++|++|+. |+||++|+.. ++|++++
T Consensus 474 ~GLAvD~~~~~LY~--tD~~~---~~I~v~~ldG~~~~~l~~-----~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~ 543 (791)
T 3m0c_C 474 DGLAVDWIHSNIYW--TDSVL---GTVSVADTKGVKRKTLFR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 543 (791)
T ss_dssp CEEEEETTTTEEEE--EETTT---TEEEEEETTSSSEEEEEE-----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred ceeeeeecCCcEEE--EecCC---CeEEEEeCCCCeEEEEEe-----CCCCCcceEEEecCCCCEEEecCCCCCeEEEEe
Confidence 99999976789999 56554 369999998775543322 12678999999986 8999999876 8999999
Q ss_pred cCCcEEEEecCCccccccccccccccCeEEEccC-CeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc
Q 039428 182 VEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD-GFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL 260 (335)
Q Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d-g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d 260 (335)
++|...+.+... .+..|+||++|++ ++||++|...++|+++++++. ..+.+...+ ..+..|.||+++
T Consensus 544 ~dG~~~~~lv~~---------~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~--~~~~v~~~~-~~l~~P~glav~ 611 (791)
T 3m0c_C 544 LNGVDIYSLVTE---------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILEDE-KRLAHPFSLAVF 611 (791)
T ss_dssp TTSCCEEEEECS---------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEEECT-TTTSSEEEEEEE
T ss_pred cCCCceEEEEeC---------CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC--ceEEEecCC-CccCCCCEEEEe
Confidence 999876544322 2345999999975 599999999999999999987 333332222 225678899986
Q ss_pred CCCcEEEEecCCCeEEEEEcCCC
Q 039428 261 SPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 261 ~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
. ++||++++..+.|++++...+
T Consensus 612 ~-~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 612 E-DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp T-TEEEEEETTTTEEEEEETTTC
T ss_pred C-CEEEEEECCCCEEEEEeCCCC
Confidence 4 599999887778877775444
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-17 Score=157.03 Aligned_cols=213 Identities=14% Similarity=0.181 Sum_probs=149.0
Q ss_pred cCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCe----EEEE
Q 039428 68 LDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWK----RLFL 143 (335)
Q Consensus 68 ~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~----~~~~ 143 (335)
..+.|.+++.....+ . .++ +.+ ..+.||++|+.+++||+ +|...+ .|+++++++.. ....
T Consensus 90 ~~~~I~~i~l~~~~~-----~--~~~--~~~--~~~~~l~~d~~~~~lyw--sD~~~~---~I~~~~~~g~~~~~~~~~~ 153 (400)
T 3p5b_L 90 NRHEVRKMTLDRSEY-----T--SLI--PNL--RNVVALDTEVASNRIYW--SDLSQR---MICSTQLDRAHGVSSYDTV 153 (400)
T ss_dssp ETTEEEEECTTSCSC-----E--EEE--CSC--SCEEEEEEETTTTEEEE--EETTTT---EEEEEEC------CCCEEE
T ss_pred ccceeEEEccCCcce-----e--Eec--ccc--CcceEEeeeeccCceEE--EecCCC---eEEEEEcccCCCCCcceEE
Confidence 467999998643331 2 132 222 47899999987899999 566543 59999987632 2211
Q ss_pred eecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccC-CeEEEE
Q 039428 144 TQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD-GFLIVI 221 (335)
Q Consensus 144 ~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d-g~Lyva 221 (335)
.. .....|.++++|. .|+||++|..+++|.+++++|+..+.+... .+..|+||+++|. |+||++
T Consensus 154 ~~-----~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~---------~~~~P~~iavdp~~g~ly~t 219 (400)
T 3p5b_L 154 IS-----RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---------NGSKPRAIVVDPVHGFMYWT 219 (400)
T ss_dssp EC-----SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC---------SSCCEEEEEEETTTTEEEEE
T ss_pred Ee-----CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC---------CCCCcceEEEecccCeEEEE
Confidence 11 1267899999998 689999999999999999998765543211 2345999999984 599999
Q ss_pred ECC-CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC-CCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCC
Q 039428 222 HMC-SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS-PTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHR 299 (335)
Q Consensus 222 d~~-~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~-~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~ 299 (335)
|.. .++|+++++++. ..+.+...+ +..|.||++|+ +++||+++...+.|++++.+.... ..+... .....
T Consensus 220 d~~~~~~I~~~~~dG~--~~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~--~~~l~ 291 (400)
T 3p5b_L 220 DWGTPAKIKKGGLNGV--DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILED--EKRLA 291 (400)
T ss_dssp ECSSSCCEEEEETTSC--SCEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEEC--SSTTS
T ss_pred eCCCCCEEEEEeCCCC--ccEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeC--CCCCC
Confidence 987 489999999986 333332222 56799999996 468999988778888888753321 122221 12356
Q ss_pred cceEEEEeCCeEEEEeccC
Q 039428 300 VATAATVKDGRVYLSHLLG 318 (335)
Q Consensus 300 ~Pt~va~~~g~lyV~~~~~ 318 (335)
.|.++++.+++||++++..
T Consensus 292 ~P~gl~v~~~~lywtd~~~ 310 (400)
T 3p5b_L 292 HPFSLAVFEDKVFWTDIIN 310 (400)
T ss_dssp SEEEEEEETTEEEEEESSS
T ss_pred CCEEEEEeCCEEEEecCCC
Confidence 7899999999999988543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-18 Score=158.79 Aligned_cols=236 Identities=10% Similarity=0.011 Sum_probs=154.7
Q ss_pred hhhhhcCCCceeE--EEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC--CCCcce
Q 039428 30 LAIAMAKPATHVY--QYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV--GNATMG 105 (335)
Q Consensus 30 ~~~~~~d~~~~~~--~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~--~~~p~G 105 (335)
..+.+.|..+.++ .++ ....|++++++++|.+|+.+..+++|+++|..+++ +.. .+...... ...|.+
T Consensus 64 ~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~----~~~---~i~~g~~~~~~~~p~~ 135 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYE----ITG---YIECPDMDMESGSTEQ 135 (328)
T ss_dssp TEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTE----EEE---EEECTTCCTTTCBCCC
T ss_pred CEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCe----EEE---EEEcCCccccCCCcce
Confidence 3455556654432 122 34579999998888655544578999999965443 122 22222100 026889
Q ss_pred EEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC----------C
Q 039428 106 IAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS----------S 175 (335)
Q Consensus 106 i~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~----------~ 175 (335)
|+++ +++|||++ .... +.|.++|++++++...+.. ...|+++++|++|++||++... +
T Consensus 136 i~~~--~~~lyv~~--~~~~--~~v~viD~~t~~~~~~i~~------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~ 203 (328)
T 3dsm_A 136 MVQY--GKYVYVNC--WSYQ--NRILKIDTETDKVVDELTI------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAP 203 (328)
T ss_dssp EEEE--TTEEEEEE--CTTC--CEEEEEETTTTEEEEEEEC------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCC
T ss_pred EEEE--CCEEEEEc--CCCC--CEEEEEECCCCeEEEEEEc------CCCccceEEcCCCCEEEEECCCccCCccccCCc
Confidence 9995 79999963 3111 4699999999987755543 3468999999999999998765 8
Q ss_pred eEEEEccCCcEE-EEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCC
Q 039428 176 KIWKVGVEGQLL-SIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSL 253 (335)
Q Consensus 176 ~I~~~d~~g~~~-~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~ 253 (335)
.|+++|+++..+ ..+. .+ ....|++|+++||+ +||+++. +|+++|+.+++ +....... .....
T Consensus 204 ~v~~id~~t~~v~~~~~-----~~----~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~--~~~~~~~~-~~~~~ 268 (328)
T 3dsm_A 204 SLYRIDAETFTVEKQFK-----FK----LGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADR--VPVRPFLE-FRDTK 268 (328)
T ss_dssp EEEEEETTTTEEEEEEE-----CC----TTCCCEEEEECTTSCEEEEESS---SEEEEETTCSS--CCSSCSBC-CCSSC
T ss_pred eEEEEECCCCeEEEEEe-----cC----CCCCceeEEEecCCCEEEEEcc---EEEEEECCCCc--eeeeeeec-CCCCc
Confidence 999999975443 2221 11 12359999999987 8999976 89999998763 21111101 00256
Q ss_pred CCeEEEcC-CCcEEEEe----cCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe
Q 039428 254 GDGLALLS-PTKLVVAG----NPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK 307 (335)
Q Consensus 254 pdGia~d~-~g~l~va~----~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~ 307 (335)
|+||++|+ +|++||++ ..++.+.+++.. + +.+.++. .+..|.++++.
T Consensus 269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g----~~~~~i~--~G~~P~~~~~~ 320 (328)
T 3dsm_A 269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G----KLIDEFY--VGIIPGAFCWK 320 (328)
T ss_dssp EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C----CEEEEEE--EEESEEEEEEE
T ss_pred eEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C----CEEEEEE--eccCcceEEEe
Confidence 99999998 68999998 544667777654 3 2233332 24457788874
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-18 Score=168.81 Aligned_cols=223 Identities=16% Similarity=0.110 Sum_probs=150.1
Q ss_pred hhhhhhhhcCCCce--eEE-EcCCCcceeeeEEcCCCCEEEE-EecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCC
Q 039428 27 SIELAIAMAKPATH--VYQ-YHSPSFLCETAKWDDVGRRFLV-SFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNA 102 (335)
Q Consensus 27 ~~~~~~~~~d~~~~--~~~-~~~~~~~pegia~d~~g~~~~~-~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~ 102 (335)
+....|...+.... ... +......|.+++++++++.+|+ +..+++|++++. ++.. ..+ .++ ..++ ..
T Consensus 15 ~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~-~g~~----~~~-~v~-~~~~--~~ 85 (619)
T 3s94_A 15 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEF-NKTE----SVQ-NVV-VSGL--LS 85 (619)
T ss_dssp ECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC----------CE-EEE-CSSC--SC
T ss_pred eccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEc-cCCC----ceE-EEE-eCCC--CC
Confidence 44455555555432 222 2223346999999986555555 477899999985 4531 011 133 2222 37
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCC-CCeEEEE
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVV-SSKIWKV 180 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~-~~~I~~~ 180 (335)
|.||++|..+++||++ |... ++|.++|+++........ ..+..|++|++||. |.+|+||+. +++|++.
T Consensus 86 P~GlAvD~~~~~ly~~--d~~~---~~I~v~~~dG~~~~~l~~-----~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~ 155 (619)
T 3s94_A 86 PDGLACDWLGEKLYWT--DSET---NRIEVSNLDGSLRKVLFW-----QELDQPRAIALDPSSGFMYWTDWGEVPKIERA 155 (619)
T ss_dssp EEEEEEETTTTEEEEE--ETTT---TEEEEEETTSCSCEEEEC-----SSCSCCCCEEEETTTTEEEEEECSSSCEEEEE
T ss_pred cCeEEEEecCCEEEEE--eCCC---CEEEEEECCCCCEEEEEe-----CCCCCCceEEEecCCCeEEEeccCCCCEEEEE
Confidence 9999999778999994 5543 469999998765432221 12678999999996 889999976 6899999
Q ss_pred ccCCcEEEEecCCccccccccccccccCeEEEccC-CeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEE
Q 039428 181 GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD-GFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLAL 259 (335)
Q Consensus 181 d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d-g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~ 259 (335)
+++|...+.+... ....|+||++|++ ++||++|...++|+++++++. ..+.+. .+ . +..|.||++
T Consensus 156 ~~dG~~~~~l~~~---------~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~--~~~~~~-~~-~-~~~P~gi~~ 221 (619)
T 3s94_A 156 GMDGSSRFIIINS---------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT--NRQAVV-KG-S-LPHPFALTL 221 (619)
T ss_dssp ETTSCSCEEEECS---------SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC--EEC------------CCCEEE
T ss_pred ECCCCceEEEEeC---------CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC--ccEEEE-eC-C-CCCceEEEE
Confidence 9998765443221 2345999999986 599999999999999999986 444432 12 1 567999999
Q ss_pred cCCCcEEEEecCCCeEEEEEcCCC
Q 039428 260 LSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 260 d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
+.+ ++|++++..+++.+++...+
T Consensus 222 ~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 222 FED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp SSS-EEEEECTTTCSEEEEESSSC
T ss_pred eCC-EEEEecCCCCEEEEEECCCC
Confidence 976 99999987788888886544
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-17 Score=153.11 Aligned_cols=259 Identities=16% Similarity=0.129 Sum_probs=159.0
Q ss_pred CCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCC-c-CCCCcceEEEeCC---CCeEEEEEe
Q 039428 46 SPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDD-V-VGNATMGIAVDRP---RNRLLVAFT 120 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~-~-~~~~p~Gi~~d~~---~g~l~v~~~ 120 (335)
..-..|++++++++|++|++.. .++|++++ .+++ + .+...+- . ....+.||+++++ ++.|||+..
T Consensus 26 ~~l~~P~~ia~~pdG~l~V~e~-~g~I~~~d-~~G~---~-----~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~ 95 (354)
T 3a9g_A 26 SDLEVPWSIAPLGGGRYLVTER-PGRLVLIS-PSGK---K-----LVASFDVANVGEAGLLGLALHPEFPKKSWVYLYAS 95 (354)
T ss_dssp CSCSCEEEEEEEETTEEEEEET-TTEEEEEC-SSCE---E-----EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCCCCCeEEEEcCCCeEEEEeC-CCEEEEEe-CCCc---e-----EeeccceeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence 3345799999999998666654 49999997 4453 1 1221120 0 1146899999985 689999754
Q ss_pred c--CCCCccceEEEEECCCC--eE---E-EEeecCCCccCCCCCCceeECCCCcEEEEeC-------------CCCeEEE
Q 039428 121 D--VLGNKYSALAAYDLSTW--KR---L-FLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-------------VSSKIWK 179 (335)
Q Consensus 121 D--~~~~~~~~v~~~d~~~~--~~---~-~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-------------~~~~I~~ 179 (335)
. ..+...++|.+++.+++ .+ . ....++ ....+.++++++++||+|||+.. ..++|+|
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~--~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~r 173 (354)
T 3a9g_A 96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP--GAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILR 173 (354)
T ss_dssp EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEE--CCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCC--CCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEE
Confidence 2 11111146999998754 11 1 111222 12256799999999999999953 2479999
Q ss_pred EccCCcEEEEecCCcccccc-ccccccccCeEEEcc-CCeEEEEECCCC---EEEEEeCCCCce------------eE-E
Q 039428 180 VGVEGQLLSIIRSPLFTAKE-WYKNVFGLNGIVYHP-DGFLIVIHMCSG---NLFKIDIRKEEE------------EV-K 241 (335)
Q Consensus 180 ~d~~g~~~~~~~~~~~~~~~-~~~~~~~p~Gia~~~-dg~Lyvad~~~~---~v~~~d~~~~~~------------~~-~ 241 (335)
++++|+... +++ |..++ ....+.+|+||++++ +|+||+++...+ .|.++.....-+ .. -
T Consensus 174 i~~dG~~p~--~np-f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p 250 (354)
T 3a9g_A 174 VDEEGRPPA--DNP-FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDP 250 (354)
T ss_dssp ECTTSCCCT--TSS-STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred EcCCCCCCC--CCC-CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCC
Confidence 999986311 000 10000 112345799999999 679999998875 466665433100 00 0
Q ss_pred EEeccCCcCCCCCCeEEE-------cCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe-CCeEEE
Q 039428 242 LIELRGGSSLSLGDGLAL-------LSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK-DGRVYL 313 (335)
Q Consensus 242 ~~~~~g~~~~~~pdGia~-------d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~-~g~lyV 313 (335)
.+.... ....|.||++ +.+|++|+++...+.++++....+.+..+ ...+-......|.+++++ +|+|||
T Consensus 251 ~~~~~~--~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~~rp~~v~~~pDG~lyv 327 (354)
T 3a9g_A 251 VIDTGS--ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRK-ISTFFKNVFGRLRDVVIDDDGGILI 327 (354)
T ss_dssp SEECTT--CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEE-EEEECTTTSCCEEEEEECTTSCEEE
T ss_pred EeecCC--CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccc-eeeeccCCCCCeeEEEECCCCcEEE
Confidence 111100 1235999999 46789999988667888887764322211 112211124458899997 899999
Q ss_pred Eec--cCCCCC
Q 039428 314 SHL--LGLGFP 322 (335)
Q Consensus 314 ~~~--~~~~~~ 322 (335)
++. .|++.|
T Consensus 328 ~~~~~~G~g~~ 338 (354)
T 3a9g_A 328 STSNRDGRGSL 338 (354)
T ss_dssp EECTTSSSSCC
T ss_pred EEeCCCCCcCC
Confidence 775 355555
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-17 Score=164.62 Aligned_cols=198 Identities=18% Similarity=0.159 Sum_probs=147.6
Q ss_pred cceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 49 FLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
..|.++++|++++.+|++ ..+++|++++. ++.. .+ .++ ..+. ..|.||++|..+++||+ +|...
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~-~g~~----~~--~v~-~~g~--~~P~GlAvD~~~~~LY~--tD~~~--- 101 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFM-NGSA----LE--HVV-EFGL--DYPEGMAVDWLGKNLYW--ADTGT--- 101 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEET-TSCS----CE--EEE-CSSC--SCCCEEEEETTTTEEEE--EETTT---
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEEC-CCCC----cE--EEE-eCCC--CCcceEEEEeCCCEEEE--EECCC---
Confidence 368999999875555555 88899999985 4542 12 233 2232 37999999977899999 45544
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCC-CCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVV-SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~-~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
++|.++++++........ ..+..|+++++|| +|.+|++|+. +++|++++++|...+.+.. .+.
T Consensus 102 ~~I~v~~~dG~~~~~l~~-----~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~----------~~~ 166 (628)
T 4a0p_A 102 NRIEVSKLDGQHRQVLVW-----KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP----------NVG 166 (628)
T ss_dssp TEEEEEETTSTTCEEEEC-----SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC----------SCS
T ss_pred CEEEEEecCCCcEEEEEe-----CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC----------CCC
Confidence 469999998764332221 1267899999998 6899999976 7899999999876554322 234
Q ss_pred ccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 206 GLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
.|+||++|+++ +||++|..+++|+++++++. ..+.+.. . +..|.|++++. +++|++++..+.+.+++...+
T Consensus 167 ~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~--~~~v~~~-~---l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 167 RANGLTIDYAKRRLYWTDLDTNLIESSNMLGL--NREVIAD-D---LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEEE-C---CSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CcceEEEccccCEEEEEECCCCEEEEEcCCCC--ceEEeec-c---CCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 59999999965 99999999999999999986 3344432 1 56799999996 799999887678887775544
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-17 Score=150.73 Aligned_cols=257 Identities=15% Similarity=0.083 Sum_probs=156.4
Q ss_pred CCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCc--CCCCcceEEEeCC---CCeEEEEEec
Q 039428 47 PSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDV--VGNATMGIAVDRP---RNRLLVAFTD 121 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~--~~~~p~Gi~~d~~---~g~l~v~~~D 121 (335)
.-..|++++++++|++|++.. .++|++++ +++. + .+...+-. ....|+||+++++ ++.|||+...
T Consensus 29 ~l~~P~~ia~~pdG~l~V~e~-~g~I~~i~--~g~~-----~--~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~ 98 (352)
T 2ism_A 29 GLEVPWALAFLPDGGMLIAER-PGRIRLFR--EGRL-----S--TYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTV 98 (352)
T ss_dssp CCSCEEEEEECTTSCEEEEET-TTEEEEEE--TTEE-----E--EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCCCceEEEEcCCCeEEEEeC-CCeEEEEE--CCCc-----c--EeecceEeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence 344799999999999766664 49999998 3431 1 12222210 1247999999985 5899997543
Q ss_pred CCCCccceEEEEECCCCeE---E-EEeecCCCccCCCCCCceeECCCCcEEEEeC-------------CCCeEEEEccCC
Q 039428 122 VLGNKYSALAAYDLSTWKR---L-FLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-------------VSSKIWKVGVEG 184 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~~~---~-~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-------------~~~~I~~~d~~g 184 (335)
......++|.+++.+++.+ . ....++......+.++++++++||++||++. ..++|+|++++|
T Consensus 99 ~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG 178 (352)
T 2ism_A 99 AEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG 178 (352)
T ss_dssp CTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred CCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence 2111114699999875422 1 1112321012257889999999999999963 237999999998
Q ss_pred cEEEEecCCccc-----ccc-ccccccccCeEEEcc-CCeEEEEECCCCE--------EEEEeCCCCce-----------
Q 039428 185 QLLSIIRSPLFT-----AKE-WYKNVFGLNGIVYHP-DGFLIVIHMCSGN--------LFKIDIRKEEE----------- 238 (335)
Q Consensus 185 ~~~~~~~~~~~~-----~~~-~~~~~~~p~Gia~~~-dg~Lyvad~~~~~--------v~~~d~~~~~~----------- 238 (335)
+... ++ .|. .++ ....+.+|+||++++ +|+||+++...+. |.++...+.-+
T Consensus 179 ~~p~--~n-pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~ 255 (352)
T 2ism_A 179 EPAP--GN-PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDP 255 (352)
T ss_dssp SBCT--TC-TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCT
T ss_pred CCCC--CC-cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCC
Confidence 5321 11 111 000 112345799999999 6799999988776 66665543100
Q ss_pred -eE-EEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCc---EEEEEeeeecCCCCCcceEEEEe-CCeEE
Q 039428 239 -EV-KLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGW---ETASVVAKFNGPTHRVATAATVK-DGRVY 312 (335)
Q Consensus 239 -~~-~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~---~~~~~~~~~~~p~~~~Pt~va~~-~g~ly 312 (335)
.. -.+.... ...|.||++ .+|++|+++...+.++++....+. +..+...-+. ....|++++++ +|+||
T Consensus 256 ~~~~p~~~~~~---~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~ly 329 (352)
T 2ism_A 256 RYRDPLYFWPQ---GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALY 329 (352)
T ss_dssp TSCCCSEECTT---CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEE
T ss_pred CCcCCeEecCC---CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEE
Confidence 00 0011111 235899999 578999998766778777764321 1111111121 23458999997 89999
Q ss_pred EEecc--CCCCC
Q 039428 313 LSHLL--GLGFP 322 (335)
Q Consensus 313 V~~~~--~~~~~ 322 (335)
|+++. |.|.|
T Consensus 330 v~~~~~~g~g~~ 341 (352)
T 2ism_A 330 VTTSNRDGRGQV 341 (352)
T ss_dssp EEECSTTTTSCC
T ss_pred EEEeCCCCCCCC
Confidence 97764 45555
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-17 Score=150.84 Aligned_cols=211 Identities=14% Similarity=0.107 Sum_probs=147.8
Q ss_pred CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEE-EEeecC
Q 039428 69 DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRL-FLTQLS 147 (335)
Q Consensus 69 ~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~-~~~~~~ 147 (335)
.+.|.+++.. +.. .+. ..+ ..+. ..+.+|.+|+.+++||+ .|...+ +|.+++++++... ....
T Consensus 12 ~~~I~~i~l~-~~~----~~~-~~~-~~~~--~~~~~ld~d~~~~~lyw--~D~~~~---~I~r~~~~g~~~~~~~~~-- 75 (318)
T 3sov_A 12 RRDLRLVDAT-NGK----ENA-TIV-VGGL--EDAAAVDFVFSHGLIYW--SDVSEE---AIKRTEFNKTESVQNVVV-- 75 (318)
T ss_dssp EEEEEEEETT-CTT----SCC-EEE-EEEE--EEEEEEEEEGGGTEEEE--EETTTT---EEEEEETTSSSCCCEEEE--
T ss_pred cCeEEEEECC-CCc----eEE-EEE-ecCC--CccEEEEEEeCCCEEEE--EECCCC---cEEEEEccCCCceEEEEc--
Confidence 4689999864 431 010 111 1121 25679999987899999 566543 5999999876321 1111
Q ss_pred CCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccC-CeEEEEECC-
Q 039428 148 GKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD-GFLIVIHMC- 224 (335)
Q Consensus 148 ~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d-g~Lyvad~~- 224 (335)
.++..|.++++|+ .|++|++|..+++|.+++++|+..+.+... .+..|+||+++|. |+||++|..
T Consensus 76 ---~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~---------~~~~P~giavdp~~g~ly~td~~~ 143 (318)
T 3sov_A 76 ---SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ---------ELDQPRAIALDPSSGFMYWTDWGE 143 (318)
T ss_dssp ---ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---------SCSSEEEEEEEGGGTEEEEEECSS
T ss_pred ---CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeC---------CCCCccEEEEeCCCCEEEEEecCC
Confidence 1257899999997 679999999999999999998765433221 2345999999985 699999976
Q ss_pred CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC-CCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceE
Q 039428 225 SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS-PTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATA 303 (335)
Q Consensus 225 ~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~-~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~ 303 (335)
.++|+|+++++. ..+.+...+ +..|.||++|+ +++||+++...+.|++++.+..... .+.. .....|.+
T Consensus 144 ~~~I~r~~~dG~--~~~~~~~~~---l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~----~~~~~P~g 213 (318)
T 3sov_A 144 VPKIERAGMDGS--SRFIIINSE---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVK----GSLPHPFA 213 (318)
T ss_dssp SCEEEEEETTSC--SCEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEC----SCCSCEEE
T ss_pred CCEEEEEEcCCC--CeEEEEECC---CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE-EEec----CCCCCceE
Confidence 789999999986 333332122 56799999997 5789999887788888886532221 1221 23567899
Q ss_pred EEEeCCeEEEEecc
Q 039428 304 ATVKDGRVYLSHLL 317 (335)
Q Consensus 304 va~~~g~lyV~~~~ 317 (335)
+++++++||++++.
T Consensus 214 lav~~~~lywtd~~ 227 (318)
T 3sov_A 214 LTLFEDILYWTDWS 227 (318)
T ss_dssp EEEETTEEEEEETT
T ss_pred EEEeCCEEEEEecC
Confidence 99999999998754
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-16 Score=146.61 Aligned_cols=247 Identities=13% Similarity=0.071 Sum_probs=166.6
Q ss_pred hhhhhhcCCCceeEEEc--------CCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC
Q 039428 29 ELAIAMAKPATHVYQYH--------SPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG 100 (335)
Q Consensus 29 ~~~~~~~d~~~~~~~~~--------~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~ 100 (335)
...+.+.|+.+.++... ..+..|++++++. +.+|+++..+++|.++|..+++ ++. .+ +. +
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~----~~~---~i--~~--~ 83 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFK----EVG---RI--TG--F 83 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETTTCC----EEE---EE--EC--C
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECcccE----EEE---Ec--CC--C
Confidence 34556666665554321 1234689999863 4566665778999999975554 222 22 21 2
Q ss_pred CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC-CCCeEEE
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-VSSKIWK 179 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-~~~~I~~ 179 (335)
..|.+|++++ ++++||++. .. +.|.++|++++++...+...........|.++++ .++++||+++ ..++|.+
T Consensus 84 ~~p~~i~~~~-~g~lyv~~~--~~---~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~v 156 (328)
T 3dsm_A 84 TSPRYIHFLS-DEKAYVTQI--WD---YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILK 156 (328)
T ss_dssp SSEEEEEEEE-TTEEEEEEB--SC---SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEE
T ss_pred CCCcEEEEeC-CCeEEEEEC--CC---CeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEE
Confidence 4789999976 679999642 11 4699999999987755554221111348999999 5788999998 4899999
Q ss_pred EccCCcE-EEEecCCccccccccccccccCeEEEccCCeEEEEECCC----------CEEEEEeCCCCceeEEEEeccCC
Q 039428 180 VGVEGQL-LSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCS----------GNLFKIDIRKEEEEVKLIELRGG 248 (335)
Q Consensus 180 ~d~~g~~-~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~----------~~v~~~d~~~~~~~~~~~~~~g~ 248 (335)
+|++... ...+. ....|++++++++|++|++.... ++|+++|+++.+ ....+.+...
T Consensus 157 iD~~t~~~~~~i~-----------~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~-v~~~~~~~~g 224 (328)
T 3dsm_A 157 IDTETDKVVDELT-----------IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT-VEKQFKFKLG 224 (328)
T ss_dssp EETTTTEEEEEEE-----------CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE-EEEEEECCTT
T ss_pred EECCCCeEEEEEE-----------cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe-EEEEEecCCC
Confidence 9987543 33221 12358999999999999998875 899999998773 4445554321
Q ss_pred cCCCCCCeEEEcCCC-cEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe--CCeEEEEe
Q 039428 249 SSLSLGDGLALLSPT-KLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK--DGRVYLSH 315 (335)
Q Consensus 249 ~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~ 315 (335)
..|.+|++++++ .+|+++. .+.+++...+... ....+. .....|.+++++ +++|||+.
T Consensus 225 ---~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~--~~~~~~-~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 225 ---DWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVP--VRPFLE-FRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp ---CCCEEEEECTTSCEEEEESS---SEEEEETTCSSCC--SSCSBC-CCSSCEEEEEECTTTCCEEEEE
T ss_pred ---CCceeEEEecCCCEEEEEcc---EEEEEECCCCcee--eeeeec-CCCCceEEEEEcCCCCeEEEEc
Confidence 359999999875 6888865 5788876544110 001111 114679999995 79999987
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-17 Score=150.12 Aligned_cols=202 Identities=17% Similarity=0.106 Sum_probs=140.2
Q ss_pred ceeeeEEcC-CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeEEEEEecCCC---
Q 039428 50 LCETAKWDD-VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRLLVAFTDVLG--- 124 (335)
Q Consensus 50 ~pegia~d~-~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~--- 124 (335)
.|.++++++ +|++|+++. .+.|+++|+.++. ++ .+.. ..+.....|++|++|+++|+||++ |...
T Consensus 81 ~p~gi~~~~~~g~l~v~d~-~~~i~~~d~~~g~-----~~--~~~~~~~~~~~~~p~~i~~d~~~G~l~v~--d~~~~~~ 150 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDC-YYHLSVVGSEGGH-----AT--QLATSVDGVPFKWLYAVTVDQRTGIVYFT--DVSTLYD 150 (322)
T ss_dssp CEEEEEEETTTTEEEEEET-TTEEEEECTTCEE-----CE--EEESEETTEECSCEEEEEECTTTCCEEEE--ESCSSCC
T ss_pred CCceEEEcCCCCcEEEEEC-CCCEEEEeCCCCE-----EE--EecccCCCCcccccceEEEecCCCEEEEE--CCccccc
Confidence 489999997 777776664 3569999854332 12 1221 111122468999999536899995 4321
Q ss_pred -----------CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcE---EEE
Q 039428 125 -----------NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQL---LSI 189 (335)
Q Consensus 125 -----------~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~---~~~ 189 (335)
...+.|+++|+++++...... .+..|++++++++|+ +||+|+.+++|++++.++.. .+.
T Consensus 151 ~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~ 224 (322)
T 2fp8_A 151 DRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV 224 (322)
T ss_dssp TTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEE
T ss_pred ccccceehcccCCCceEEEEeCCCCEEEEecc------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccce
Confidence 111569999998887653221 157899999999986 99999999999999988531 111
Q ss_pred ecCCccccccccccccccCeEEEccCCeEEEEECC----------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEE
Q 039428 190 IRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC----------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLAL 259 (335)
Q Consensus 190 ~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~----------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~ 259 (335)
+ .. ..+|+||+++++|+|||++.. .++|+++++++. ....+..+.+..+..|.+++.
T Consensus 225 ~-----~~------~~gP~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~--~~~~~~~~~g~~~~~~~~~~~ 291 (322)
T 2fp8_A 225 L-----VK------IPNPGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGN--ILEVIPLPPPFAGEHFEQIQE 291 (322)
T ss_dssp E-----EE------CSSEEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSC--EEEEEECCTTTTTSCCCEEEE
T ss_pred E-----Ee------CCCCCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCC--EEEEEECCCCCccccceEEEE
Confidence 1 10 112999999999999999976 578999999866 666676543222567888887
Q ss_pred cCCCcEEEEecCCCeEEEEEcC
Q 039428 260 LSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 260 d~~g~l~va~~~~~~~~v~~~~ 281 (335)
+ +|+|||++...+.+.+++..
T Consensus 292 ~-~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 292 H-DGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp E-TTEEEEECSSCSEEEEEEC-
T ss_pred e-CCEEEEeecCCCceEEEecc
Confidence 4 78999997655778777654
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.9e-17 Score=160.83 Aligned_cols=199 Identities=17% Similarity=0.138 Sum_probs=146.0
Q ss_pred ceeeeEEcCCC-CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVG-RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g-~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.|.++++|+.+ .+||++...++|++++. ++.. .+ .++ ..++ ..|.||++|..+++||+ +|... +
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~-~g~~----~~--~v~-~~~~--~~p~GlAvD~~~~~lY~--tD~~~---~ 414 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFI-DGSG----SQ--FVV-TAQI--AHPDGIAVDWVARNLYW--TDTGT---D 414 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEET-TSCS----CE--EEE-CSSC--SCCCEEEEETTTTEEEE--EETTT---T
T ss_pred ccEEEEEEcCCCeEEEEeCCCCeEEEEEc-CCCc----cE--EEE-ECCC--CCcCceEEecccCcEEE--EeCCC---C
Confidence 57899999854 45555577899999985 4541 12 233 2222 47899999966899999 46543 4
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCC-CeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVS-SKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~-~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
.|.++++++........ .++..|+++++||. |.+|++|+.. ++|++.+.+|.....+... .+..
T Consensus 415 ~I~v~~~~G~~~~~l~~-----~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~---------~l~~ 480 (619)
T 3s94_A 415 RIEVTRLNGTMRKILIS-----EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNT---------SLGW 480 (619)
T ss_dssp EEEEEETTSCSCEEEEC-----TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS---------SCSC
T ss_pred cEEEEeCCCCeEEEEEE-----CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeC---------CCCC
Confidence 69999998764332221 13789999999995 9999999874 8999999998755443222 2345
Q ss_pred cCeEEEccC-CeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 207 LNGIVYHPD-GFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 207 p~Gia~~~d-g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
|+||++|++ ++||++|...++|.++++++. ..+.+...+ +..|.||+++.+ .||++++..+++..++...+
T Consensus 481 P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~--~~~~~~~~~---l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 481 PNGLALDYDEGKIYWGDAKTDKIEVMNTDGT--GRRVLVEDK---IPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSC--CCEEEEECC---CCSSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred CeeeEEcccCCEEEEEECCCCEEEEEecCCC--ceEEEeccC---CCCcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence 999999985 599999999999999999886 333332122 567999999864 99999887778888876655
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-16 Score=162.63 Aligned_cols=212 Identities=14% Similarity=0.182 Sum_probs=147.9
Q ss_pred CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeE----EEEe
Q 039428 69 DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKR----LFLT 144 (335)
Q Consensus 69 ~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~----~~~~ 144 (335)
...|.+++.....+ . .++ +.+ ..+.||++|..+++||+ +|...+ +|+++++++... ...+
T Consensus 403 ~~~Ir~i~l~~~~~-----~--~l~--~~~--~~~~gl~~d~~~~~lY~--sD~~~~---~I~~~~l~g~~~~~~~~~vi 466 (791)
T 3m0c_C 403 RHEVRKMTLDRSEY-----T--SLI--PNL--RNVVALDTEVASNRIYW--SDLSQR---MICSTQLDRAHGVSSYDTVI 466 (791)
T ss_dssp BSSEEEECTTSCCC-----E--EEE--CSC--SSEEEEEEETTTTEEEE--EETTTT---EEEEEEC--------CEEEE
T ss_pred ccceeEeeccCCcc-----e--eee--cCC--CceEEEeecccCCeeEE--eeccce---eEEEEeccCCCCCcceeEEE
Confidence 46788887533331 1 132 222 47899999987899999 566543 599999876321 2111
Q ss_pred ecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccC-CeEEEEE
Q 039428 145 QLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD-GFLIVIH 222 (335)
Q Consensus 145 ~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d-g~Lyvad 222 (335)
. ..+..|.+|++|..+ +||++|+.+++|++++++|+..+.+... .+..|+|||++|. |+||++|
T Consensus 467 ~-----~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~---------~l~~P~gIaVDp~~g~LYwtD 532 (791)
T 3m0c_C 467 S-----RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---------NGSKPRAIVVDPVHGFMYWTD 532 (791)
T ss_dssp C-----SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC---------TTCCEEEEEEETTTTEEEEEE
T ss_pred e-----cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeC---------CCCCcceEEEecCCCCEEEec
Confidence 1 126789999999865 8999999999999999999876544221 2345999999996 6999999
Q ss_pred CCC-CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC-CCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCc
Q 039428 223 MCS-GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS-PTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRV 300 (335)
Q Consensus 223 ~~~-~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~-~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~ 300 (335)
.+. ++|+++++++. ..+.+...+ +..|.||++|+ +++||+++.+.+.|++++.+..... .+... ...+..
T Consensus 533 ~g~~~~I~~~~~dG~--~~~~lv~~~---l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~-~v~~~--~~~l~~ 604 (791)
T 3m0c_C 533 WGTPAKIKKGGLNGV--DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILED--EKRLAH 604 (791)
T ss_dssp CSSSCEEEEEETTSC--CEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEEC--TTTTSS
T ss_pred CCCCCeEEEEecCCC--ceEEEEeCC---CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE-EEecC--CCccCC
Confidence 886 89999999987 444443222 57799999994 5799999887788888887533222 22221 123456
Q ss_pred ceEEEEeCCeEEEEeccC
Q 039428 301 ATAATVKDGRVYLSHLLG 318 (335)
Q Consensus 301 Pt~va~~~g~lyV~~~~~ 318 (335)
|.++++.+++||++++..
T Consensus 605 P~glav~~~~lYwtD~~~ 622 (791)
T 3m0c_C 605 PFSLAVFEDKVFWTDIIN 622 (791)
T ss_dssp EEEEEEETTEEEEEETTT
T ss_pred CCEEEEeCCEEEEEECCC
Confidence 889999899999987643
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-16 Score=157.27 Aligned_cols=210 Identities=12% Similarity=0.114 Sum_probs=153.1
Q ss_pred cCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecC
Q 039428 68 LDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLS 147 (335)
Q Consensus 68 ~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~ 147 (335)
..+.|.+++...... . ..+..+++ ..|.||++|+.+++||+ +|... .+|.++++++.........
T Consensus 13 ~~~~I~~i~l~~~~~-----~--~~~~~~~~--~~~~~l~~d~~~~~lyw--tD~~~---~~I~r~~~~g~~~~~v~~~- 77 (628)
T 4a0p_A 13 RRADIRRISLETNNN-----N--VAIPLTGV--KEASALDFDVTDNRIYW--TDISL---KTISRAFMNGSALEHVVEF- 77 (628)
T ss_dssp ETTEEEEEESSCTTC-----E--EECCCCSC--SCEEEEEEETTTTEEEE--EETTT---TEEEEEETTSCSCEEEECS-
T ss_pred eCCcEEEEECCCCCc-----c--eEEEcCCC--CceEEEEEECCCCEEEE--EECCC---CeEEEEECCCCCcEEEEeC-
Confidence 467999998643321 1 12222332 37899999988899999 56654 3599999987654432221
Q ss_pred CCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEcc-CCeEEEEECC-
Q 039428 148 GKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHP-DGFLIVIHMC- 224 (335)
Q Consensus 148 ~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~-dg~Lyvad~~- 224 (335)
+...|.|+++|.. |++|++|...++|.+++++|+..+.+... .+..|++|+++| +|.||++|.+
T Consensus 78 ----g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~---------~l~~P~~iavdp~~G~lY~tD~g~ 144 (628)
T 4a0p_A 78 ----GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK---------DLDSPRALALDPAEGFMYWTEWGG 144 (628)
T ss_dssp ----SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECS---------SCCCEEEEEEETTTTEEEEEECSS
T ss_pred ----CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeC---------CCCCcccEEEccCCCeEEEeCCCC
Confidence 2568999999975 78999999999999999998765433221 234599999998 5799999976
Q ss_pred CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCC-CcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceE
Q 039428 225 SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSP-TKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATA 303 (335)
Q Consensus 225 ~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~-g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~ 303 (335)
+++|+|+++++. ..+.+. .+ +..|.|+++|++ ++||+++...+.+++++.+.... +++.. .+..|.+
T Consensus 145 ~~~I~r~~~dG~--~~~~l~-~~---~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~----~l~~P~g 212 (628)
T 4a0p_A 145 KPKIDRAAMDGS--ERTTLV-PN---VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIAD----DLPHPFG 212 (628)
T ss_dssp SCEEEEEETTSC--SCEEEE-CS---CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEE----CCSCEEE
T ss_pred CCEEEEEeCCCC--ceEEEE-CC---CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeec----cCCCceE
Confidence 789999999987 344432 22 567999999985 68999988778888888754322 22222 2456889
Q ss_pred EEEeCCeEEEEecc
Q 039428 304 ATVKDGRVYLSHLL 317 (335)
Q Consensus 304 va~~~g~lyV~~~~ 317 (335)
+++.+++||++++.
T Consensus 213 lav~~~~ly~tD~~ 226 (628)
T 4a0p_A 213 LTQYQDYIYWTDWS 226 (628)
T ss_dssp EEEETTEEEEEETT
T ss_pred EEEECCEEEEecCC
Confidence 99999999998864
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.2e-17 Score=154.48 Aligned_cols=245 Identities=10% Similarity=0.024 Sum_probs=158.5
Q ss_pred hhhhhhhhh--hhhhhhcCCCceeEEEc-----------CCC----cceeeeEE-------cCCCCEEEEE-ecC-----
Q 039428 20 IPIAYIISI--ELAIAMAKPATHVYQYH-----------SPS----FLCETAKW-------DDVGRRFLVS-FLD----- 69 (335)
Q Consensus 20 ~p~~~~~~~--~~~~~~~d~~~~~~~~~-----------~~~----~~pegia~-------d~~g~~~~~~-~~~----- 69 (335)
.|.++.++. ...+++++...+.+.+- ... ..|.+++| +++|+.+|+. ...
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 355666663 45566665544444321 111 14999999 9999955555 433
Q ss_pred -CeEEEEECCC-CCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECC-------CCeE
Q 039428 70 -GGVGQVLVPD-EYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLS-------TWKR 140 (335)
Q Consensus 70 -~~I~~~d~~~-g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~-------~~~~ 140 (335)
..|++++... +.+... .....+ +. +..|+|+++++.+++||++ |... ++|++||++ ++.+
T Consensus 220 ~~~V~~i~r~~~G~~~~~--~~~~~v--~~--~~~p~giavdp~~g~LYvt--d~~~---g~V~r~d~~~~~~~~~tg~~ 288 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDR--SDIQLI--AA--YKQCNGATIHPINGELYFN--SYEK---GQVFRLDLVDYFKTIKNGGS 288 (496)
T ss_dssp EEEEEEEECCTTSCCSTT--SCEEEE--EE--ESCCCCEEECTTTCCEEEE--ETTT---TEEEEECHHHHHHHHHTTCC
T ss_pred CceEEEEecCCCCceeec--ccceee--cc--CCCceEEEEcCCCCeEEEE--ECCC---CEEEEEecccccccccCcee
Confidence 2488996332 242100 000011 11 2478999999878999994 5543 359999997 5543
Q ss_pred -----------E-EEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcE------EEEecC---Cccc-c
Q 039428 141 -----------L-FLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQL------LSIIRS---PLFT-A 197 (335)
Q Consensus 141 -----------~-~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~------~~~~~~---~~~~-~ 197 (335)
. ..... + ....|.+++++++|+ +||+|+.+++|++++.++.. ..+.+. ..+. .
T Consensus 289 ~tp~~~~~~g~~~~l~~~---~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG 364 (496)
T 3kya_A 289 WDPIVKNNPNTFKQLFTI---A-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDD 364 (496)
T ss_dssp CCCBGGGCTTTEEEEEEC---S-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCC
T ss_pred ecccccccccccceeEec---C-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCC
Confidence 1 11222 1 145788999999998 89999999999998887632 223332 1111 1
Q ss_pred ccccccccccC-eEEEc-------cCCeEEEEECCCCEEEEEeCCCCceeEEEEecc------------C--------Cc
Q 039428 198 KEWYKNVFGLN-GIVYH-------PDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELR------------G--------GS 249 (335)
Q Consensus 198 ~~~~~~~~~p~-Gia~~-------~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~------------g--------~~ 249 (335)
+.....+..|. |++++ ++|.|||+|+.+++|.+|++++ .+..+.-. | ..
T Consensus 365 ~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G---~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a 441 (496)
T 3kya_A 365 VGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG---IVSTYAGRGASTSLADGNQWGTDDGDLREVA 441 (496)
T ss_dssp BGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC---BEEEEEESCTTHHHHHSCSCCCCCEETTTTC
T ss_pred cccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC---CEEEEecccccccccCccccccCCCCchhhh
Confidence 12234567799 88887 5789999999999999999765 34444321 1 01
Q ss_pred CCCCCCeEEEcCC-CcEEEEecCCCeEEEEEcCC
Q 039428 250 SLSLGDGLALLSP-TKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 250 ~~~~pdGia~d~~-g~l~va~~~~~~~~v~~~~~ 282 (335)
.|..|.||++|++ |+|||++...++||.+....
T Consensus 442 ~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 442 RFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp CCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred hcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 3677999999997 99999988768888887654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-15 Score=136.98 Aligned_cols=233 Identities=17% Similarity=0.213 Sum_probs=155.5
Q ss_pred cceeeeEEcCCCCEEEEEe-c------CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEec
Q 039428 49 FLCETAKWDDVGRRFLVSF-L------DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD 121 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~-~------~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D 121 (335)
..|.+++++++|+.+|+.. . +++|+++|..+++ ++. .+... ..+.+++++++++.+|++..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~----~~~---~~~~~----~~~~~~~~s~dg~~l~v~~~- 108 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE----VTQ---AIHND----LKPFGATINNTTQTLWFGNT- 108 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC----EEE---EEEES----SCCCSEEEETTTTEEEEEET-
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe----EEE---EEecC----CCcceEEECCCCCEEEEEec-
Confidence 4588999999998887773 3 5689999965444 122 22222 35789999985566998543
Q ss_pred CCCCccceEEEEECCCCeEEEEeecCCCcc----CCCCCCceeECCCCc-EEEEeC-CCCeEEEEccCCcEE-EEecCCc
Q 039428 122 VLGNKYSALAAYDLSTWKRLFLTQLSGKSE----EKSTADDIAVDAEGN-AYVTDV-VSSKIWKVGVEGQLL-SIIRSPL 194 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~p~~~~vd~~G~-lyV~d~-~~~~I~~~d~~g~~~-~~~~~~~ 194 (335)
.. +.|.+||+++++............ ....|++++++++|+ +|+++. ..+.|+++|.++... ..+.
T Consensus 109 -~~---~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~--- 181 (353)
T 3vgz_A 109 -VN---SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ--- 181 (353)
T ss_dssp -TT---TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC---
T ss_pred -CC---CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec---
Confidence 22 369999999988775554421100 022478899999986 999884 578899999875443 3221
Q ss_pred cccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCC
Q 039428 195 FTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPY 272 (335)
Q Consensus 195 ~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~ 272 (335)
. ....|++++++||| .||+++. +++|+++|+..++ ....+..........+.+++++++|+ +|+++...
T Consensus 182 --~-----~~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 252 (353)
T 3vgz_A 182 --N-----TGKMSTGLALDSEGKRLYTTNA-DGELITIDTADNK-ILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA 252 (353)
T ss_dssp --C-----CCTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTE-EEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS
T ss_pred --C-----CCCccceEEECCCCCEEEEEcC-CCeEEEEECCCCe-EEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC
Confidence 0 12348999999999 7888875 7899999998874 44455542211124577899999985 88887655
Q ss_pred CeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe--CCeEEEEec
Q 039428 273 PSARLVESSDGWETASVVAKFNGPTHRVATAATVK--DGRVYLSHL 316 (335)
Q Consensus 273 ~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~~ 316 (335)
+.+.+++...+ +....+..+. |.++++. ++++|++..
T Consensus 253 ~~v~~~d~~~~----~~~~~~~~~~---~~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 253 AEVLVVDTRNG----NILAKVAAPE---SLAVLFNPARNEAYVTHR 291 (353)
T ss_dssp SEEEEEETTTC----CEEEEEECSS---CCCEEEETTTTEEEEEET
T ss_pred CEEEEEECCCC----cEEEEEEcCC---CceEEECCCCCEEEEEEC
Confidence 78888887654 2222332222 4567775 455888654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.4e-15 Score=135.14 Aligned_cols=234 Identities=12% Similarity=0.072 Sum_probs=160.5
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcC------CCCcceEEEeCCCCeEEEEEecC
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV------GNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~------~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
.|.+++++++|+.+|++ ..++.|+++|..+++ ++. .+..+... ...|.+++++++++.+|++....
T Consensus 90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 162 (353)
T 3vgz_A 90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGE----VKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK 162 (353)
T ss_dssp CCCSEEEETTTTEEEEEETTTTEEEEEETTTCC----EEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEeCCCCe----eEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCC
Confidence 48899999999966666 667899999975554 122 22221100 01278899998667789864211
Q ss_pred CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcE-EEEecCCccccccc
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAKEW 200 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~~~ 200 (335)
+ ..|++||+++++....... . ...|++++++++|+ +|+++. .+.|+++|..... ...+....
T Consensus 163 --~--~~i~~~d~~~~~~~~~~~~--~---~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~------ 226 (353)
T 3vgz_A 163 --E--SVIWVVDGGNIKLKTAIQN--T---GKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLD------ 226 (353)
T ss_dssp --S--CEEEEEETTTTEEEEEECC--C---CTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCC------
T ss_pred --C--ceEEEEcCCCCceEEEecC--C---CCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCC------
Confidence 1 4699999999887755432 1 34588999999986 788765 7899999987543 33221100
Q ss_pred cccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEE
Q 039428 201 YKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLV 278 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~ 278 (335)
......+++++++||| .||+++...++|+++|+..++ ....+... .|.+++++++|+ +|+++...+.+.++
T Consensus 227 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~------~~~~~~~s~dg~~l~v~~~~~~~v~~~ 299 (353)
T 3vgz_A 227 DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN-ILAKVAAP------ESLAVLFNPARNEAYVTHRQAGKVSVI 299 (353)
T ss_dssp SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC-EEEEEECS------SCCCEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEEcC------CCceEEECCCCCEEEEEECCCCeEEEE
Confidence 0012347889999999 799999999999999998764 45555532 267899999986 89997666889888
Q ss_pred EcCCCcEEEEEeeeecCCCCCcceEEEEe--CCeEEEEeccCC
Q 039428 279 ESSDGWETASVVAKFNGPTHRVATAATVK--DGRVYLSHLLGL 319 (335)
Q Consensus 279 ~~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~~~~~ 319 (335)
+...+ +....+.. ...|.++++. +..|||+...+.
T Consensus 300 d~~~~----~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~ 336 (353)
T 3vgz_A 300 DAKSY----KVVKTFDT--PTHPNSLALSADGKTLYVSVKQKS 336 (353)
T ss_dssp ETTTT----EEEEEEEC--CSEEEEEEECTTSCEEEEEEECCC
T ss_pred ECCCC----eEEEEEec--CCCCCeEEEcCCCCEEEEEEcccc
Confidence 87654 23333332 2357899995 455999765544
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.6e-16 Score=136.63 Aligned_cols=204 Identities=16% Similarity=0.151 Sum_probs=139.4
Q ss_pred CCcceeeeEEcCCCCEEEEEe--cCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCC
Q 039428 47 PSFLCETAKWDDVGRRFLVSF--LDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLG 124 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~--~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~ 124 (335)
...+|+|++++++|.+|+.+. ..++|.++|..+++ ++. .+..+.. ..+.|++++ +++||+++. ..
T Consensus 19 ~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~----v~~---~i~l~~~--~fgeGi~~~--g~~lyv~t~--~~ 85 (266)
T 2iwa_A 19 PYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK----VEN---IHKMDDS--YFGEGLTLL--NEKLYQVVW--LK 85 (266)
T ss_dssp TTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC----EEE---EEECCTT--CCEEEEEEE--TTEEEEEET--TC
T ss_pred CCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC----EEE---EEecCCC--cceEEEEEe--CCEEEEEEe--cC
Confidence 345799999999875555543 35899999976665 233 2222221 145688887 579999643 22
Q ss_pred CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCcE-EEEecCCccccccccc
Q 039428 125 NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAKEWYK 202 (335)
Q Consensus 125 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~~~~~ 202 (335)
+.+.++|+++.+++..++.. .|.+..+.+|| ++|+++ ..++|+++|+++.. ...+....- + .
T Consensus 86 ---~~v~viD~~t~~v~~~i~~g-------~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~--~---~ 149 (266)
T 2iwa_A 86 ---NIGFIYDRRTLSNIKNFTHQ-------MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYN--G---H 149 (266)
T ss_dssp ---SEEEEEETTTTEEEEEEECC-------SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEET--T---E
T ss_pred ---CEEEEEECCCCcEEEEEECC-------CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCC--C---c
Confidence 46999999999887555442 12234444454 799999 68899999998643 332211100 0 0
Q ss_pred cccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCC---------cCCCCCCeEEEcCCC-cEEEEecCC
Q 039428 203 NVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGG---------SSLSLGDGLALLSPT-KLVVAGNPY 272 (335)
Q Consensus 203 ~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~---------~~~~~pdGia~d~~g-~l~va~~~~ 272 (335)
....+|++.+. +|.||++...++.|.+||+.+++ ....+++.+- .....|.||++++++ ++||++...
T Consensus 150 p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~-V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 150 RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGT-LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW 227 (266)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCC-EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC
T ss_pred ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCc-EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC
Confidence 12358999999 88999999999999999999875 6677775420 012357899999986 799997766
Q ss_pred CeEEEEEcC
Q 039428 273 PSARLVESS 281 (335)
Q Consensus 273 ~~~~v~~~~ 281 (335)
+.+.+++..
T Consensus 228 ~~v~~i~l~ 236 (266)
T 2iwa_A 228 PKLFEIKLH 236 (266)
T ss_dssp SEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 888887753
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-16 Score=142.55 Aligned_cols=205 Identities=18% Similarity=0.090 Sum_probs=136.7
Q ss_pred cceeeeEEcCCCCEEEEEec-----CCeEEEEECCCCCCCcceeeeeEEeecCCc---CCCCcceEEEeCCCCeEEEEEe
Q 039428 49 FLCETAKWDDVGRRFLVSFL-----DGGVGQVLVPDEYSPGTVLEEVKLVKEDDV---VGNATMGIAVDRPRNRLLVAFT 120 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~-----~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~---~~~~p~Gi~~d~~~g~l~v~~~ 120 (335)
..|.++++|++|++|+++.. .++|+++|..+++ ++. .+..+.. ....+++|++|++++.+|++
T Consensus 67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~----~~~---~~~~~~~~~~~~~~~~~v~vd~~~g~~yvt-- 137 (343)
T 2qe8_A 67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQ----LSR---VIYLPPPITLSNSFVNDLAVDLIHNFVYIS-- 137 (343)
T ss_dssp SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTE----EEE---EEECCTTTSCTTCCCCEEEEETTTTEEEEE--
T ss_pred eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCe----EEE---EEECChhhcccccccceEEEecCCCEEEEE--
Confidence 47999999999999888854 5899999965454 122 2223211 12357999999767899995
Q ss_pred cCCCCccceEEEEECCCCeEEEEeec--C-CC--------ccC-------------CCCCCceeECCCC-cEEEEeCCCC
Q 039428 121 DVLGNKYSALAAYDLSTWKRLFLTQL--S-GK--------SEE-------------KSTADDIAVDAEG-NAYVTDVVSS 175 (335)
Q Consensus 121 D~~~~~~~~v~~~d~~~~~~~~~~~~--~-~~--------~~~-------------~~~p~~~~vd~~G-~lyV~d~~~~ 175 (335)
|......+.|.+||+++++....... . .+ +.. ...+++|+++++| .+|+++....
T Consensus 138 d~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~ 217 (343)
T 2qe8_A 138 DPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST 217 (343)
T ss_dssp ECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS
T ss_pred cCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC
Confidence 44211114699999988776543321 0 00 000 1357999999999 5999999989
Q ss_pred eEEEEccC----CcEEE--EecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCc
Q 039428 176 KIWKVGVE----GQLLS--IIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGS 249 (335)
Q Consensus 176 ~I~~~d~~----g~~~~--~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~ 249 (335)
+|++++.+ +.... .+ ..+.. .+....|+||++|++|+||+++..+++|.++++..+ ....+.... .
T Consensus 218 ~l~~~~~~~~~~~~~~~~~~~--~~~~~---~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G--~~~~~~~~~-~ 289 (343)
T 2qe8_A 218 SMYRIKSADLSNLQLTDAELG--SKIER---YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR--AYKLLVTDE-K 289 (343)
T ss_dssp EEEEEEHHHHTCTTCCHHHHH--TTCEE---EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT--EEEEEEECG-G
T ss_pred eEEEEEHHHhcCCCCChhhhh--cceEe---cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC--CEEEEEECC-c
Confidence 99999853 11100 00 00000 011225999999999999999999999999999333 333332211 1
Q ss_pred CCCCCCeEEEcCCCcEEEEecC
Q 039428 250 SLSLGDGLALLSPTKLVVAGNP 271 (335)
Q Consensus 250 ~~~~pdGia~d~~g~l~va~~~ 271 (335)
+..|++++++++|+|||+++.
T Consensus 290 -~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 290 -LSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp -GSCEEEEEECTTSCEEEEECC
T ss_pred -eecCCeeEECCCCcEEEEeCc
Confidence 567999999999999999763
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.4e-15 Score=131.70 Aligned_cols=200 Identities=10% Similarity=0.024 Sum_probs=139.4
Q ss_pred CCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeEEEEEecCC--
Q 039428 47 PSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRLLVAFTDVL-- 123 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~-- 123 (335)
....|.+++++++|++|+++...++|+++|+.+++ +.. +.. ......+.++++++|+ +|++|++.....
T Consensus 67 ~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~-----~~~--~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~ 138 (296)
T 3e5z_A 67 PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE-----WES--IADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGID 138 (296)
T ss_dssp SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC-----EEE--EECEETTEECCCCCCEEECT-TSCEEEEECSHHHH
T ss_pred CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc-----EEE--EeeccCCCCCCCCCCEEECC-CCCEEEECCccccc
Confidence 34468999999999987776667899999864565 221 221 1222224688999997 899999532000
Q ss_pred ----------CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC--CcE---EE
Q 039428 124 ----------GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE--GQL---LS 188 (335)
Q Consensus 124 ----------~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~--g~~---~~ 188 (335)
......|+++|++ ++...... ....|++++++++|+++++++..++|++++.+ |+. ..
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~------~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~ 211 (296)
T 3e5z_A 139 KPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR------DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGV 211 (296)
T ss_dssp CGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC------CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEE
T ss_pred cccccccccccCCCcEEEEECCC-CCEEEeec------CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCe
Confidence 0011469999987 55442211 15678999999999877999999999999974 544 22
Q ss_pred EecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc-CCC-cEE
Q 039428 189 IIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL-SPT-KLV 266 (335)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d-~~g-~l~ 266 (335)
.+ .. ....|+||+++++|+||++. ++.|.++++++. ....+.... . |..+++. +++ .||
T Consensus 212 ~~-~~---------~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~--~~~~~~~~~----~-~~~~~f~~~d~~~L~ 272 (296)
T 3e5z_A 212 HF-TV---------EPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGD--ELGRVLTPQ----T-TSNLCFGGPEGRTLY 272 (296)
T ss_dssp EE-CC---------SSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSC--EEEEEECSS----C-CCEEEEESTTSCEEE
T ss_pred Ee-eC---------CCCCCCeEEECCCCCEEEEc--CCeEEEECCCCC--EEEEEECCC----C-ceeEEEECCCCCEEE
Confidence 22 11 12358999999999999999 789999999865 566665432 3 8899995 565 699
Q ss_pred EEecCCCeEEEEEcCC
Q 039428 267 VAGNPYPSARLVESSD 282 (335)
Q Consensus 267 va~~~~~~~~v~~~~~ 282 (335)
++.. ++++.++...
T Consensus 273 v~t~--~~l~~~~~~~ 286 (296)
T 3e5z_A 273 MTVS--TEFWSIETNV 286 (296)
T ss_dssp EEET--TEEEEEECSC
T ss_pred EEcC--CeEEEEEccc
Confidence 9977 6677676543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.4e-15 Score=135.10 Aligned_cols=261 Identities=13% Similarity=0.074 Sum_probs=159.6
Q ss_pred CCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC---CCCcceEEEeCC---CCeEEEEE
Q 039428 46 SPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV---GNATMGIAVDRP---RNRLLVAF 119 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~---~~~p~Gi~~d~~---~g~l~v~~ 119 (335)
..-..|+++++.++|++|++....++|+++++.++. ... +...+... ...+.||+++|+ ++.||++.
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~-----~~~--v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR-----KTE--LGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----EEE--EEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc-----Eee--ecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence 334579999999999977766658999999753343 121 22222211 246899999973 68999964
Q ss_pred ecCCCCccceEEEEECCCC-----e----EEEEeecCCCccCCCCCCceeECCCCcEEEEe-------------CCCCeE
Q 039428 120 TDVLGNKYSALAAYDLSTW-----K----RLFLTQLSGKSEEKSTADDIAVDAEGNAYVTD-------------VVSSKI 177 (335)
Q Consensus 120 ~D~~~~~~~~v~~~d~~~~-----~----~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d-------------~~~~~I 177 (335)
+.... ++|.++..+.+ . ......++. ...+....|++++||+|||+. ...++|
T Consensus 102 t~~~~---~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~--~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~I 176 (347)
T 3das_A 102 TSASD---NRIVRMLYDEKKPSGEQLGAPDTVFRGIPK--GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKI 176 (347)
T ss_dssp ECSSS---EEEEEEEBCTTSCTTCCBCCCEEEEEEECC--CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCE
T ss_pred ecCCC---CEEEEEEeCCCCcccccCCCcEEEEEcCCC--CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEE
Confidence 32221 57999987652 1 111222322 225678889999999999984 236899
Q ss_pred EEEccCCcEEEEecCCccccc-cccccccccCeEEEccCCeEEEEECCC---CEEEEEeCCCCc------ee------EE
Q 039428 178 WKVGVEGQLLSIIRSPLFTAK-EWYKNVFGLNGIVYHPDGFLIVIHMCS---GNLFKIDIRKEE------EE------VK 241 (335)
Q Consensus 178 ~~~d~~g~~~~~~~~~~~~~~-~~~~~~~~p~Gia~~~dg~Lyvad~~~---~~v~~~d~~~~~------~~------~~ 241 (335)
+|++++|+... +++ |... -....+.+|.||+++|+|.||+++.+. ..|.++.....- +. ..
T Consensus 177 lRi~~dG~ip~--~nP-f~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~ 253 (347)
T 3das_A 177 LRMTPDGEPAP--GNP-FPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHD 253 (347)
T ss_dssp EEECTTSSBCT--TCS-STTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCC
T ss_pred EEEeCCCCccC--CCC-CCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccC
Confidence 99999987321 111 1110 112245679999999999999999875 467776543320 00 00
Q ss_pred -EEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe-CCeEEEEec--c
Q 039428 242 -LIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK-DGRVYLSHL--L 317 (335)
Q Consensus 242 -~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~-~g~lyV~~~--~ 317 (335)
.+..... ...|.||++. +|.+|++.....+++.+....+....+...-+.+ ....|..|++. +|.|||++. .
T Consensus 254 P~~~~~~~--~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~-~~gR~~dv~~~pDG~lyv~td~~~ 329 (347)
T 3das_A 254 PVAQWSTD--EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEG-EYGRLRTVAPAGGDKLWLVTSNTD 329 (347)
T ss_dssp CSEEECTT--TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTT-TSSCEEEEEEEETTEEEEEECTTS
T ss_pred CcEecCCC--CCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecC-CCCCccEEEECCCCcEEEEEcCCC
Confidence 0011000 1247899998 5899999765566776666544211111111222 23457889986 999999644 4
Q ss_pred CCCCCccc
Q 039428 318 GLGFPNTK 325 (335)
Q Consensus 318 ~~~~~~~~ 325 (335)
|+|.|...
T Consensus 330 g~g~p~~~ 337 (347)
T 3das_A 330 GRGDAKGG 337 (347)
T ss_dssp SSSCCCTT
T ss_pred CCCCCCCC
Confidence 56777443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-15 Score=138.13 Aligned_cols=223 Identities=13% Similarity=0.100 Sum_probs=146.8
Q ss_pred HhhhhhhhhhhhhhhhcCCCceeEEE-c---------CCCcceeeeEEcCCCCEEEEEecC--CeEEEEECCCCCCCcce
Q 039428 19 AIPIAYIISIELAIAMAKPATHVYQY-H---------SPSFLCETAKWDDVGRRFLVSFLD--GGVGQVLVPDEYSPGTV 86 (335)
Q Consensus 19 ~~p~~~~~~~~~~~~~~d~~~~~~~~-~---------~~~~~pegia~d~~g~~~~~~~~~--~~I~~~d~~~g~~~~~v 86 (335)
..|.+++++.++.++|+|...+++.. . .....|.+++++++|++|+++... .+|++++..+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~----- 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT----- 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC-----
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe-----
Confidence 35667777777777887755444332 1 122368999999999987776433 369999865565
Q ss_pred eeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEE-EEee--cC--CCccCCCCCCceeE
Q 039428 87 LEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRL-FLTQ--LS--GKSEEKSTADDIAV 161 (335)
Q Consensus 87 ~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~-~~~~--~~--~~~~~~~~p~~~~v 161 (335)
+. .+...+. ...+.|+++.+ ++++|+ .|... +.|+++|+.+++.. +... +. .+...+..||++
T Consensus 107 ~~--~~~~~~~--~~~~~g~~~~~-~~~~~v--~d~~~---g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-- 174 (306)
T 2p4o_A 107 VE--TLLTLPD--AIFLNGITPLS-DTQYLT--ADSYR---GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-- 174 (306)
T ss_dssp EE--EEEECTT--CSCEEEEEESS-SSEEEE--EETTT---TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred EE--EEEeCCC--ccccCcccccC-CCcEEE--EECCC---CeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence 22 1333333 23678998875 788999 45432 46999999876422 1111 10 111236789998
Q ss_pred CCCC-cEEEEeCCCCeEEEEccCC--cEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCce
Q 039428 162 DAEG-NAYVTDVVSSKIWKVGVEG--QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEE 238 (335)
Q Consensus 162 d~~G-~lyV~d~~~~~I~~~d~~g--~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~ 238 (335)
+++| ++||+|+.+++|++++.++ +... ...+. ....|.||+++++|+|||++..+++|.+|++++.
T Consensus 175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~---~~~~~------~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~-- 243 (306)
T 2p4o_A 175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE---PEIFV------EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-- 243 (306)
T ss_dssp EEETTEEEEEETTTTEEEEEEBCTTSCBCC---CEEEE------ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC--
T ss_pred CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc---cEEEe------ccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCC--
Confidence 6665 6999999999999999874 2100 00011 1245999999999999999999999999999754
Q ss_pred eEEEEeccCCcCCCCCCeEEEc---CC-CcEEEEecC
Q 039428 239 EVKLIELRGGSSLSLGDGLALL---SP-TKLVVAGNP 271 (335)
Q Consensus 239 ~~~~~~~~g~~~~~~pdGia~d---~~-g~l~va~~~ 271 (335)
......... .+..|.+++++ ++ +.|||++.+
T Consensus 244 ~~~~~~~~~--~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 244 TTIIAQAEQ--GVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EEEEECGGG--TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EEEEeeccc--ccCCceEEEEecccCCCCEEEEECCC
Confidence 322222221 14569999998 67 579999763
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-15 Score=135.19 Aligned_cols=249 Identities=14% Similarity=0.150 Sum_probs=151.5
Q ss_pred CCcceeeeEEcCCCCEEEEEec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCC
Q 039428 47 PSFLCETAKWDDVGRRFLVSFL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLG 124 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~ 124 (335)
....|.+++++|+|++|+++.. ++.|+.|+..++. ... +..... .+..|.++++++++..||+++.+ .
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~-----~~~--~~~~~~-~~~~p~~~a~spdg~~l~~~~~~--~ 107 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQT-----AHK--LNTVVA-PGTPPAYVAVDEARQLVYSANYH--K 107 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTE-----EEE--EEEEEE-ESCCCSEEEEETTTTEEEEEETT--T
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCc-----EEE--eeeeec-CCCCCEEEEECCCCCEEEEEeCC--C
Confidence 3456899999999995555543 5789998854333 111 111111 12478899999855568885321 1
Q ss_pred CccceEEEEECC-CCeEE--EEeecCCCc----cCCCCCCceeECCCCcEEEEeCCCCeEEEEccC--CcEEEEecCCcc
Q 039428 125 NKYSALAAYDLS-TWKRL--FLTQLSGKS----EEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE--GQLLSIIRSPLF 195 (335)
Q Consensus 125 ~~~~~v~~~d~~-~~~~~--~~~~~~~~~----~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~--g~~~~~~~~~~~ 195 (335)
+.|.+||.+ ++... ......+.+ +....++.++++|+|++|+++...+.|++++.+ |+..... .+
T Consensus 108 ---~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~---~~ 181 (347)
T 3hfq_A 108 ---GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQS---VL 181 (347)
T ss_dssp ---TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEE---EE
T ss_pred ---CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEee---eE
Confidence 358888874 33333 222211111 113457789999999999999999999888875 4433211 01
Q ss_pred ccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEE---EeccCC--cCCCCCCeEEEcCCCc-EEEE
Q 039428 196 TAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKL---IELRGG--SSLSLGDGLALLSPTK-LVVA 268 (335)
Q Consensus 196 ~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~---~~~~g~--~~~~~pdGia~d~~g~-l~va 268 (335)
.. ....+|++++++||| +||+++..+++|..++.+...+.... +..... .....|.+++++++|+ ||++
T Consensus 182 ~~----~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~ 257 (347)
T 3hfq_A 182 TM----EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVS 257 (347)
T ss_dssp EC----CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEE
T ss_pred Ec----CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEE
Confidence 11 122358899999999 69999999999888877642113222 221110 0013477899999996 8888
Q ss_pred ecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe-C-CeEEEEecc
Q 039428 269 GNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK-D-GRVYLSHLL 317 (335)
Q Consensus 269 ~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~-~-g~lyV~~~~ 317 (335)
+...+.+.+++.+.+.. .+....+... ...|.++++. + ..||++...
T Consensus 258 ~~~~~~v~v~~~~~~g~-~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~ 306 (347)
T 3hfq_A 258 NRGYNTLAVFAVTADGH-LTLIQQISTE-GDFPRDFDLDPTEAFVVVVNQN 306 (347)
T ss_dssp EETTTEEEEEEECGGGC-EEEEEEEECS-SSCCCEEEECTTSSEEEEEETT
T ss_pred eCCCCEEEEEEECCCCc-EEEeEEEecC-CCCcCeEEECCCCCEEEEEEcC
Confidence 76567888888753321 1233333221 3457889995 4 458886543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=160.78 Aligned_cols=211 Identities=14% Similarity=0.183 Sum_probs=144.3
Q ss_pred CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCC----CeEEEEe
Q 039428 69 DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLST----WKRLFLT 144 (335)
Q Consensus 69 ~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~----~~~~~~~ 144 (335)
.+.|.+++.. +.. +. .++ +. ...|.||++++.+++||+ +|...+ .|+++++++ ......
T Consensus 385 ~~~I~~id~~-~~~----~~--~~~--~~--~~~p~gla~d~~~~~Ly~--sD~~~~---~I~~~~~~g~~~~~~~~~~- 447 (699)
T 1n7d_A 385 RHEVRKMTLD-RSE----YT--SLI--PN--LRNVVALDTEVASNRIYW--SDLSQR---MICSTQLDRAHGVSSYDTV- 447 (699)
T ss_dssp TTC-CEECTT-SCC----EE--CCS--CC--CTTCCCCEEETTTTEEEE--CCTTTT---SBEEEESCCCCC-CCCCCB-
T ss_pred ccceEEEeCC-CCc----ce--eee--cc--CcceEEEccccccCeEEE--EecCCC---eEEEEecCCCCCCcceEEE-
Confidence 4688999753 431 11 121 22 247899999987899999 676544 499999876 211111
Q ss_pred ecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccC-CeEEEEE
Q 039428 145 QLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD-GFLIVIH 222 (335)
Q Consensus 145 ~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d-g~Lyvad 222 (335)
+ ..++..|.+|++|. .|+||++|...++|++++++|+..+.+... .+..|+||+++|+ |+||+++
T Consensus 448 -i---~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~---------~~~~P~giavDp~~g~ly~td 514 (699)
T 1n7d_A 448 -I---SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---------QGSKPRAIVVDPVHGFMYWTD 514 (699)
T ss_dssp -C---CSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC---------SSCCCCCEECCSSSSCCEECC
T ss_pred -E---eCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC---------CCCCcceEEEccCCCcEEEcc
Confidence 1 11256799999995 578999999999999999998765543221 2345999999995 5999999
Q ss_pred CCC-CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCC-CcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCc
Q 039428 223 MCS-GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSP-TKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRV 300 (335)
Q Consensus 223 ~~~-~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~-g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~ 300 (335)
... ++|+++++++. ..+.+... .+..|.||++|++ ++||+++...+.|.+++.+... ...+... ......
T Consensus 515 ~~~~~~I~~~~~dG~--~~~~l~~~---~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~--~~~~~~ 586 (699)
T 1n7d_A 515 WGTPAKIKKGGLNGV--DIYSLVTE---NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILED--EKRLAH 586 (699)
T ss_dssp CSSSCCEEBCCSSSC--CCCEESCS---SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCC--SSSCSS
T ss_pred cCCCCeEEEEeCCCC--CeeEEEeC---CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEec--CCcCCC
Confidence 876 89999999876 33333211 2567999999976 6899998876788888764321 1122211 123456
Q ss_pred ceEEEEeCCeEEEEecc
Q 039428 301 ATAATVKDGRVYLSHLL 317 (335)
Q Consensus 301 Pt~va~~~g~lyV~~~~ 317 (335)
|.++++++++||++++.
T Consensus 587 P~glavd~~~lywtd~~ 603 (699)
T 1n7d_A 587 PFSLAVFEDKVFWTDII 603 (699)
T ss_dssp CCCCEEETTEEEEECST
T ss_pred ceEeEEECCEEEEEeCC
Confidence 88999998899998754
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-15 Score=134.64 Aligned_cols=193 Identities=11% Similarity=0.049 Sum_probs=132.2
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeec-CCcCCCCcceEEEeCCCCeEEEEEecCCC---
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKE-DDVVGNATMGIAVDRPRNRLLVAFTDVLG--- 124 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~-~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~--- 124 (335)
..|.+++++++|++|+.. .+.|+++|..+++ ++ .+... .....+.++++++|+ +|++|+++.....
T Consensus 54 ~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~-----~~--~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~ 123 (297)
T 3g4e_A 54 APVSSVALRQSGGYVATI--GTKFCALNWKEQS-----AV--VLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPA 123 (297)
T ss_dssp SCEEEEEEBTTSSEEEEE--TTEEEEEETTTTE-----EE--EEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTT
T ss_pred CceEEEEECCCCCEEEEE--CCeEEEEECCCCc-----EE--EEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccc
Confidence 358899999999965544 6799999965444 22 12221 111224689999997 8999996532210
Q ss_pred ---CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEcc---CCcEE--EEecCCcc
Q 039428 125 ---NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGV---EGQLL--SIIRSPLF 195 (335)
Q Consensus 125 ---~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~---~g~~~--~~~~~~~~ 195 (335)
.....|+++|+++. ...... ....||+++++++|+ +|++++..++|++++. +|... +.+. .+
T Consensus 124 ~~~~~~~~l~~~d~~g~-~~~~~~------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~--~~ 194 (297)
T 3g4e_A 124 VLERHQGALYSLFPDHH-VKKYFD------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVY--KL 194 (297)
T ss_dssp BCCTTCEEEEEECTTSC-EEEEEE------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEE--EC
T ss_pred cccCCCcEEEEEECCCC-EEEEee------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEE--EC
Confidence 11257999998643 332211 146789999999985 9999999999999975 34332 1111 01
Q ss_pred ccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc-CCC-cEEEEec
Q 039428 196 TAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL-SPT-KLVVAGN 270 (335)
Q Consensus 196 ~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d-~~g-~l~va~~ 270 (335)
.. ....|.||++|++|+||+++..+++|+++++++++ ....+..+. ..|..+++. +++ .|||+..
T Consensus 195 ~~-----~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~-~~~~i~~p~----~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 195 EK-----EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK-RLQTVKLPV----DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CG-----GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC-EEEEEECSS----SBEEEEEEESGGGCEEEEEEB
T ss_pred CC-----CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce-EEEEEECCC----CCceEEEEeCCCCCEEEEEcC
Confidence 10 12358999999999999999999999999998543 566676543 348899997 564 7999966
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.8e-14 Score=127.01 Aligned_cols=221 Identities=14% Similarity=0.128 Sum_probs=145.4
Q ss_pred hhhhhcCCCceeE--EEcCCCcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcce-
Q 039428 30 LAIAMAKPATHVY--QYHSPSFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMG- 105 (335)
Q Consensus 30 ~~~~~~d~~~~~~--~~~~~~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~G- 105 (335)
..+.+.|..+..+ .+......| +++++++|+.+|+. ..+++|+++|..+++ +.. ..+... ..+..
T Consensus 20 ~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~----~~~--~~~~~~----~~~~~~ 88 (331)
T 3u4y_A 20 RRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP----PKV--VAIQEG----QSSMAD 88 (331)
T ss_dssp TEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS----CEE--EEEEEC----SSCCCC
T ss_pred CeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc----eeE--EecccC----CCCccc
Confidence 3455555544332 223333446 99999999966666 557899999965444 101 122221 24556
Q ss_pred EEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCe-EEEEc--
Q 039428 106 IAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSK-IWKVG-- 181 (335)
Q Consensus 106 i~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~-I~~~d-- 181 (335)
+++++++..+|+ .+..++. ..|.+||.++++....... ...|++++++|+|+ +|+++...+. |++++
T Consensus 89 ~~~s~dg~~l~~--~~~~~~~-~~i~v~d~~~~~~~~~~~~------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~ 159 (331)
T 3u4y_A 89 VDITPDDQFAVT--VTGLNHP-FNMQSYSFLKNKFISTIPI------PYDAVGIAISPNGNGLILIDRSSANTVRRFKID 159 (331)
T ss_dssp EEECTTSSEEEE--CCCSSSS-CEEEEEETTTTEEEEEEEC------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEEC
T ss_pred eEECCCCCEEEE--ecCCCCc-ccEEEEECCCCCeEEEEEC------CCCccceEECCCCCEEEEEecCCCceEEEEEEC
Confidence 999985555664 3322111 2699999999887644332 34678999999996 9999887666 55544
Q ss_pred cCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCcee---EEEEeccCCcCCCCCCeE
Q 039428 182 VEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEE---VKLIELRGGSSLSLGDGL 257 (335)
Q Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~---~~~~~~~g~~~~~~pdGi 257 (335)
.+|.....- ...+ .....|.+++++||| +||+++..+++|.++|+..++ . ...+.. + ..|.++
T Consensus 160 ~~g~~~~~~-~~~~------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~-~~~~~~~~~~-~----~~~~~~ 226 (331)
T 3u4y_A 160 ADGVLFDTG-QEFI------SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE-NITLLNAVGT-N----NLPGTI 226 (331)
T ss_dssp TTCCEEEEE-EEEE------CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT-SCEEEEEEEC-S----SCCCCE
T ss_pred CCCcEeecC-Cccc------cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc-ccceeeeccC-C----CCCceE
Confidence 445442210 0001 123458999999999 699999999999999998764 4 445542 2 358999
Q ss_pred EEcCCCc-EEEEecCCCeEEEEEcCCC
Q 039428 258 ALLSPTK-LVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 258 a~d~~g~-l~va~~~~~~~~v~~~~~~ 283 (335)
+++++|+ +|+++.+.+.+.+++...+
T Consensus 227 ~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp EECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred EECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 9999997 8888665567888887655
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-15 Score=130.04 Aligned_cols=191 Identities=12% Similarity=0.058 Sum_probs=135.6
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d 181 (335)
.++||++++ +++||+++..... +.|.++|+++++++....+.. ..++.+++++ .+++|++++..+.++++|
T Consensus 22 f~~Gl~~~~-dg~Lyvstg~~~~---s~v~~iD~~tg~v~~~i~l~~----~~fgeGi~~~-g~~lyv~t~~~~~v~viD 92 (266)
T 2iwa_A 22 FTQGLVYAE-NDTLFESTGLYGR---SSVRQVALQTGKVENIHKMDD----SYFGEGLTLL-NEKLYQVVWLKNIGFIYD 92 (266)
T ss_dssp CEEEEEECS-TTEEEEEECSTTT---CEEEEEETTTCCEEEEEECCT----TCCEEEEEEE-TTEEEEEETTCSEEEEEE
T ss_pred CcccEEEeC-CCeEEEECCCCCC---CEEEEEECCCCCEEEEEecCC----CcceEEEEEe-CCEEEEEEecCCEEEEEE
Confidence 478999996 5899997543222 569999999999886666521 3455578876 358999999999999999
Q ss_pred cCCc-EEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccC-CcCCCCCCeEE
Q 039428 182 VEGQ-LLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRG-GSSLSLGDGLA 258 (335)
Q Consensus 182 ~~g~-~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g-~~~~~~pdGia 258 (335)
++.. .+..+ .. . .+.|..+++|| +||+++ ++++|+.+|+.+.+ ....+.+.. ...+..|.+++
T Consensus 93 ~~t~~v~~~i-----~~------g-~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~-v~~~I~Vg~~~~p~~~~nele 158 (266)
T 2iwa_A 93 RRTLSNIKNF-----TH------Q-MKDGWGLATDGKILYGSD-GTSILYEIDPHTFK-LIKKHNVKYNGHRVIRLNELE 158 (266)
T ss_dssp TTTTEEEEEE-----EC------C-SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEE
T ss_pred CCCCcEEEEE-----EC------C-CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCc-EEEEEEECCCCcccccceeEE
Confidence 8754 33322 11 1 25677777787 999999 68999999999875 566666432 12345688999
Q ss_pred EcCCCcEEEEecCCCeEEEEEcCCCcEEEEEee-eec-------CCCCCcceEEEEe--CCeEEEEec
Q 039428 259 LLSPTKLVVAGNPYPSARLVESSDGWETASVVA-KFN-------GPTHRVATAATVK--DGRVYLSHL 316 (335)
Q Consensus 259 ~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~-~~~-------~p~~~~Pt~va~~--~g~lyV~~~ 316 (335)
+. +|.+|++++.++.+.+++...+-....+.- .+. .+....|.+++++ ++++||+..
T Consensus 159 ~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk 225 (266)
T 2iwa_A 159 YI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK 225 (266)
T ss_dssp EE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred EE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence 88 789999987778999999876633333321 110 1223567899996 678999764
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-14 Score=132.67 Aligned_cols=253 Identities=13% Similarity=0.123 Sum_probs=152.3
Q ss_pred CcceeeeEEcCCCC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCc--C-CCCcceEEEeCC---CCeEEEEEe
Q 039428 48 SFLCETAKWDDVGR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDV--V-GNATMGIAVDRP---RNRLLVAFT 120 (335)
Q Consensus 48 ~~~pegia~d~~g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~--~-~~~p~Gi~~d~~---~g~l~v~~~ 120 (335)
-..|.+++++++|+ +|++.. .++|++++. ++.. .+ .+...+.. . ...+.||+++|+ ++.||++..
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~-~G~i~~~~~-~g~~-----~~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~ 88 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLR-GGELRHWQA-GKGL-----SA-PLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYS 88 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEET-TTEEEEEET-TTEE-----CC-CCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCCcEEEEEcCCCCEEEEEeC-CceEEEEeC-CCce-----ee-EecCCcccccCCCCCceeEEECCCCCCCCEEEEEEe
Confidence 34799999999999 766654 689999984 4541 10 11111111 1 135789999985 799999753
Q ss_pred cCC--CCccceEEEEECCCC--eE---EEE-eecCCCccCCCCCCceeECCCCcEEEEeCC-------------CCeEEE
Q 039428 121 DVL--GNKYSALAAYDLSTW--KR---LFL-TQLSGKSEEKSTADDIAVDAEGNAYVTDVV-------------SSKIWK 179 (335)
Q Consensus 121 D~~--~~~~~~v~~~d~~~~--~~---~~~-~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-------------~~~I~~ 179 (335)
... +...++|.+++.+.+ .+ ... ..++......+.++++++++||+|||+... .++|+|
T Consensus 89 ~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~r 168 (353)
T 2g8s_A 89 EVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVR 168 (353)
T ss_dssp EECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEE
T ss_pred CCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEE
Confidence 211 100257999887643 22 111 122211122567899999999999999532 468999
Q ss_pred EccCCcEEEEecCCccc-----ccc-ccccccccCeEEEcc-CCeEEEEECCC---CEEEEEeCCCCce--e--------
Q 039428 180 VGVEGQLLSIIRSPLFT-----AKE-WYKNVFGLNGIVYHP-DGFLIVIHMCS---GNLFKIDIRKEEE--E-------- 239 (335)
Q Consensus 180 ~d~~g~~~~~~~~~~~~-----~~~-~~~~~~~p~Gia~~~-dg~Lyvad~~~---~~v~~~d~~~~~~--~-------- 239 (335)
++++|+... +++ |. .++ ....+.+|.||++++ +|+||++|... .+|.++...+.-+ .
T Consensus 169 i~~dG~~p~--~np-f~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~ 245 (353)
T 2g8s_A 169 LTDQGEIPD--DNP-FIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYS 245 (353)
T ss_dssp EETTSCCCT--TCT-TTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTT
T ss_pred ECCCCCCCC--CCC-CcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCC
Confidence 999986321 111 11 000 112345799999999 78999999874 3666665432100 0
Q ss_pred ---------------EE-EEeccCCcCCCCCCeEEEcC-------CCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCC
Q 039428 240 ---------------VK-LIELRGGSSLSLGDGLALLS-------PTKLVVAGNPYPSARLVESSDGWETASVVAKFNGP 296 (335)
Q Consensus 240 ---------------~~-~~~~~g~~~~~~pdGia~d~-------~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p 296 (335)
.. .+.... ...|.|+++.. +|.+||++...+.++.+...++... .. ..+-..
T Consensus 246 ~~~~~~~~~~~~~~~~~P~~~~~~---~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~-~~-~~~~~~ 320 (353)
T 2g8s_A 246 GFKIPEAKGEIVAGTEQPVFYWKD---SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVT-ED-GRILTD 320 (353)
T ss_dssp SSCCTTCCBSSCTTSCCCSEEESS---CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEE-EE-EEESGG
T ss_pred CCccCcccCCCCCCccCCeEEeCC---CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEe-ee-EEcccC
Confidence 00 000000 12588999974 5899999886678888777654111 11 112112
Q ss_pred CCCcceEEEEe-CCeEEEEec
Q 039428 297 THRVATAATVK-DGRVYLSHL 316 (335)
Q Consensus 297 ~~~~Pt~va~~-~g~lyV~~~ 316 (335)
....|.+++++ +|+|||++.
T Consensus 321 ~~~rp~~v~~~pdG~lyv~td 341 (353)
T 2g8s_A 321 RGQRIRDVRTGPDGYLYVLTD 341 (353)
T ss_dssp GCCCEEEEEECTTSCEEEEEC
T ss_pred CCCceeEEEECCCCcEEEEEe
Confidence 23458899997 899999653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-13 Score=125.09 Aligned_cols=215 Identities=17% Similarity=0.184 Sum_probs=135.9
Q ss_pred CcceeeeEEcCCCCEEEEE-ecCCeEEEEECC-CCCCCcceeeeeEEeecCCc------CCCCcceEEEeCCCCeEEEEE
Q 039428 48 SFLCETAKWDDVGRRFLVS-FLDGGVGQVLVP-DEYSPGTVLEEVKLVKEDDV------VGNATMGIAVDRPRNRLLVAF 119 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~-~g~~~~~v~~~~~~~~~~~~------~~~~p~Gi~~d~~~g~l~v~~ 119 (335)
...|.+++++++|+.+|++ ..+++|..|+.. ++. ......+...+. ....+++++++| +|++|++
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~-----~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~- 157 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA-----LTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVI- 157 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC-----EEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEE-
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC-----eeecceeecCCCCCCccccCCCceEEEECC-CCcEEEE-
Confidence 4468899999999977777 467888888752 233 111111111110 112467899998 5668884
Q ss_pred ecCCCCccceEEEEECC-CCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccC---CcEEEEecCCc
Q 039428 120 TDVLGNKYSALAAYDLS-TWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVE---GQLLSIIRSPL 194 (335)
Q Consensus 120 ~D~~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~---g~~~~~~~~~~ 194 (335)
+... ..|.+||.+ ++++......... ....|++++++|||+ +|+++...+.|.+++.+ |+... +.. .
T Consensus 158 -~~~~---~~v~~~~~~~~g~~~~~~~~~~~--~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~-~~~-~ 229 (347)
T 3hfq_A 158 -DLGS---DKVYVYNVSDAGQLSEQSVLTME--AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ-LGI-V 229 (347)
T ss_dssp -ETTT---TEEEEEEECTTSCEEEEEEEECC--TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE-EEE-E
T ss_pred -eCCC---CEEEEEEECCCCcEEEeeeEEcC--CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE-eee-e
Confidence 3332 358889887 5654422222111 135788999999997 99999888888877755 33321 110 0
Q ss_pred cccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCc--eeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEec
Q 039428 195 FTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEE--EEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGN 270 (335)
Q Consensus 195 ~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~--~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~ 270 (335)
...+........+.+++++||| +||+++..+++|..++++..+ .....+...+ ..|.+++++++|+ ||+++.
T Consensus 230 ~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~----~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 230 KTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEG----DFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp ESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSS----SCCCEEEECTTSSEEEEEET
T ss_pred eecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCC----CCcCeEEECCCCCEEEEEEc
Confidence 0001001112458899999999 799999999999999886331 1222333222 3589999999996 888877
Q ss_pred CCCeEEEEEcC
Q 039428 271 PYPSARLVESS 281 (335)
Q Consensus 271 ~~~~~~v~~~~ 281 (335)
.++.+.+++.+
T Consensus 306 ~~~~v~v~~~d 316 (347)
T 3hfq_A 306 NTDNATLYARD 316 (347)
T ss_dssp TTTEEEEEEEC
T ss_pred CCCcEEEEEEe
Confidence 66778887654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.65 E-value=6.3e-14 Score=127.76 Aligned_cols=203 Identities=14% Similarity=0.186 Sum_probs=136.1
Q ss_pred CcceeeeEEcCCCCEEEEEecC----CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC-
Q 039428 48 SFLCETAKWDDVGRRFLVSFLD----GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV- 122 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~----~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~- 122 (335)
...|.+++++++|++|+++..+ +.|+++|..++. +. .++.... .+..++++++|+ +|++|++....
T Consensus 86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~-----~~--~~~~~~~-~~~~~~~i~~d~-~g~l~v~~~~~~ 156 (333)
T 2dg1_A 86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-----LQ--DIIEDLS-TAYCIDDMVFDS-KGGFYFTDFRGY 156 (333)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-----CE--EEECSSS-SCCCEEEEEECT-TSCEEEEECCCB
T ss_pred CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE-----EE--EEEccCc-cCCcccceEECC-CCCEEEEecccc
Confidence 3468999999999988877544 689999854333 12 1222111 234689999997 78999964321
Q ss_pred CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEcc--CCcEEEEecCCcccccc
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGV--EGQLLSIIRSPLFTAKE 199 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~--~g~~~~~~~~~~~~~~~ 199 (335)
.......|+++|+++++...... ....|++++++++|+ +|+++...++|++++. +|+....+....+..
T Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~-- 228 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTVTPIIQ------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY-- 228 (333)
T ss_dssp TTBCCEEEEEECTTSCCEEEEEE------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE--
T ss_pred ccCCCceEEEEeCCCCEEEEeec------CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEe--
Confidence 00111469999998766543221 135688999999996 9999988899999998 444332111000100
Q ss_pred ccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCC--cCCCCCCeEEEcCCC-cEEEEec
Q 039428 200 WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGG--SSLSLGDGLALLSPT-KLVVAGN 270 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~--~~~~~pdGia~d~~g-~l~va~~ 270 (335)
......|++|+++++|++|+++..+++|+++++++. ....+..... ..+..|.+++++++| .||++..
T Consensus 229 -~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~--~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 229 -FTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY--PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 299 (333)
T ss_dssp -CCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC--EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred -cCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCC--EEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence 001135899999999999999988899999999755 5566654321 012258999999886 7999855
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.3e-14 Score=127.45 Aligned_cols=197 Identities=12% Similarity=0.064 Sum_probs=135.8
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeEEEEEecCC--C
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRLLVAFTDVL--G 124 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~--~ 124 (335)
...|.+++++++|++|+++...++|++++. +++ +.. +.. ..+...+.|+.+++++ +|++|++ |.. .
T Consensus 85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~-~g~-----~~~--~~~~~~~~~~~~~~~i~~d~-dG~l~~t--d~~~g~ 153 (305)
T 3dr2_A 85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDA-DGQ-----AHL--LVGRYAGKRLNSPNDLIVAR-DGAIWFT--DPPFGL 153 (305)
T ss_dssp CSCEEEEEECTTSCEEEEETTTTEEEEECT-TSC-----EEE--EECEETTEECSCCCCEEECT-TSCEEEE--CCSGGG
T ss_pred CCccceeeECCCCCEEEEECCCCEEEEECC-CCC-----EEE--EEeccCCCccCCCCCEEECC-CCCEEEe--CcCCCc
Confidence 346899999999997776666689999985 465 221 221 1222225789999997 8999994 321 0
Q ss_pred ------------CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCC-----CeEEEEccCCcE
Q 039428 125 ------------NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVS-----SKIWKVGVEGQL 186 (335)
Q Consensus 125 ------------~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~-----~~I~~~d~~g~~ 186 (335)
.....|+++|++++++..... ...|+++++++||+ +|++++.. ++|++++.++..
T Consensus 154 ~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~-------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 154 RKPSQGCPADPELAHHSVYRLPPDGSPLQRMAD-------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp SCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEE-------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred cccccccccccccCCCeEEEEcCCCCcEEEEec-------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 012579999998776553221 46789999999996 99999874 899999976533
Q ss_pred EEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cE
Q 039428 187 LSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KL 265 (335)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l 265 (335)
... ...+... ....|+||+++++|+||++. .+.|+++++++. ....+..+. .|..+++.+++ .|
T Consensus 227 l~~--~~~~~~~----~~~~pdgi~~d~~G~lwv~~--~~gv~~~~~~g~--~~~~~~~~~-----~~~~~~f~~d~~~L 291 (305)
T 3dr2_A 227 LHD--RRHFASV----PDGLPDGFCVDRGGWLWSSS--GTGVCVFDSDGQ--LLGHIPTPG-----TASNCTFDQAQQRL 291 (305)
T ss_dssp EEE--EEEEECC----SSSCCCSEEECTTSCEEECC--SSEEEEECTTSC--EEEEEECSS-----CCCEEEECTTSCEE
T ss_pred ccC--CeEEEEC----CCCCCCeEEECCCCCEEEec--CCcEEEECCCCC--EEEEEECCC-----ceeEEEEeCCCCEE
Confidence 210 0011100 12358999999999999997 456999999776 666666532 38899998776 69
Q ss_pred EEEecCCCeEEEEE
Q 039428 266 VVAGNPYPSARLVE 279 (335)
Q Consensus 266 ~va~~~~~~~~v~~ 279 (335)
|++.. +++..++
T Consensus 292 ~it~~--~~l~~~~ 303 (305)
T 3dr2_A 292 FITGG--PCLWMLP 303 (305)
T ss_dssp EEEET--TEEEEEE
T ss_pred EEEcC--CeEEEEE
Confidence 99977 5565443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-14 Score=134.53 Aligned_cols=232 Identities=12% Similarity=0.044 Sum_probs=141.6
Q ss_pred hhhhcCCCceeEEE-cCCCcceeeeEEcCCCCEEEEEe----------cCCeEEEEECCCCCCCcceeeeeEEeecC--C
Q 039428 31 AIAMAKPATHVYQY-HSPSFLCETAKWDDVGRRFLVSF----------LDGGVGQVLVPDEYSPGTVLEEVKLVKED--D 97 (335)
Q Consensus 31 ~~~~~d~~~~~~~~-~~~~~~pegia~d~~g~~~~~~~----------~~~~I~~~d~~~g~~~~~v~~~~~~~~~~--~ 97 (335)
.+.+.|..+.++.- -..+..| +++++|+|+.+|++. .++.|.+||..+.+ ++.+ +..+ .
T Consensus 100 ~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~----vv~~---I~v~g~~ 171 (426)
T 3c75_H 100 QQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL----PIAD---IELPDAP 171 (426)
T ss_dssp EEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC----EEEE---EEETTCC
T ss_pred eEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc----EEEE---EECCCcc
Confidence 44455554433221 1124579 999999999888883 35689999965444 2332 2222 1
Q ss_pred --cCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCc----e------------
Q 039428 98 --VVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADD----I------------ 159 (335)
Q Consensus 98 --~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~----~------------ 159 (335)
..+..|.+++++++++++||++.... +.|.++|.++++++..+++.+. ....|.+ +
T Consensus 172 r~~~g~~P~~~~~spDGk~lyV~n~~~~----~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~dG~~~~V~ 245 (426)
T 3c75_H 172 RFLVGTYQWMNALTPDNKNLLFYQFSPA----PAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCRDGSLARVD 245 (426)
T ss_dssp CCCBSCCGGGSEECTTSSEEEEEECSSS----CEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSSEEEEE
T ss_pred ccccCCCcceEEEcCCCCEEEEEecCCC----CeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcCCCCEEEEE
Confidence 11357999999997789999754211 4699999999987755544210 0011111 2
Q ss_pred -------------------------eECCCC-cEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe---E
Q 039428 160 -------------------------AVDAEG-NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG---I 210 (335)
Q Consensus 160 -------------------------~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G---i 210 (335)
.++++| ++|++. ..++|+++|..+....++..-.............|.| +
T Consensus 246 ~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s-~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~v 324 (426)
T 3c75_H 246 FADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT-YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQT 324 (426)
T ss_dssp CCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB-TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCE
T ss_pred CCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe-CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceee
Confidence 234443 244432 3456666666544333221100000000111223445 9
Q ss_pred EEccCC-eEEEEEC---------CCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc--EEEEecCCCeEEEE
Q 039428 211 VYHPDG-FLIVIHM---------CSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK--LVVAGNPYPSARLV 278 (335)
Q Consensus 211 a~~~dg-~Lyvad~---------~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~--l~va~~~~~~~~v~ 278 (335)
++++|+ +|||++. .+++|.+||....+ .+..+++.+ .|+||+++++|+ +|+++..++.+.|+
T Consensus 325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k-vv~~I~vg~-----~P~gia~spDg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE-RINKIELGH-----EIDSINVSQDAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC-EEEEEEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe-EEEEEECCC-----CcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence 999998 9999975 24689999999876 667777533 399999999986 77777677999999
Q ss_pred EcCCC
Q 039428 279 ESSDG 283 (335)
Q Consensus 279 ~~~~~ 283 (335)
+....
T Consensus 399 D~~t~ 403 (426)
T 3c75_H 399 DAATG 403 (426)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 98654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.63 E-value=5.7e-14 Score=126.59 Aligned_cols=204 Identities=14% Similarity=0.142 Sum_probs=138.4
Q ss_pred cceeeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEE-eec-CCcCCCCcceEEEeCCCCeEEEEEecCC--
Q 039428 49 FLCETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKL-VKE-DDVVGNATMGIAVDRPRNRLLVAFTDVL-- 123 (335)
Q Consensus 49 ~~pegia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~-~~~-~~~~~~~p~Gi~~d~~~g~l~v~~~D~~-- 123 (335)
..|.+++++++ |++|+++. .+.|+++|.. ++ +. .+ ... .......+++|++|+ +|++|++.....
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~-----~~--~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~ 140 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GT-----FE--EIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVA 140 (314)
T ss_dssp CCEEEEEECSSSSEEEEEET-TTEEEEEETT-SC-----EE--ECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCT
T ss_pred CCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CC-----EE--EEEeccCCCccccCCcCEEECC-CCCEEEEecCcccc
Confidence 35889999999 77776664 4589999964 54 22 12 211 111224689999997 789999643210
Q ss_pred --------CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeEC----CCC-cEEEEeCCCCeEEEEccC--CcEEE
Q 039428 124 --------GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVD----AEG-NAYVTDVVSSKIWKVGVE--GQLLS 188 (335)
Q Consensus 124 --------~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd----~~G-~lyV~d~~~~~I~~~d~~--g~~~~ 188 (335)
......|+++|++ ++...... ....|++++++ ++| .+|+++...++|++++.+ ++...
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~ 213 (314)
T 1pjx_A 141 PADYTRSMQEKFGSIYCFTTD-GQMIQVDT------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN 213 (314)
T ss_dssp TSCCCBTTSSSCEEEEEECTT-SCEEEEEE------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE
T ss_pred cccccccccCCCCeEEEECCC-CCEEEecc------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc
Confidence 0001469999987 55442221 14568899999 998 699999999999999964 43221
Q ss_pred --EecCCccccccccccc-cccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-
Q 039428 189 --IIRSPLFTAKEWYKNV-FGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK- 264 (335)
Q Consensus 189 --~~~~~~~~~~~~~~~~-~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~- 264 (335)
.+. .+.. .. ..|++|+++++|+||+++..++.|+++++++++ ....+.... ..|.+++++++|+
T Consensus 214 ~~~~~--~~~~-----~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~-~~~~~~~~~----~~~~~i~~~~dg~~ 281 (314)
T 1pjx_A 214 KKVWG--HIPG-----THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ-PKMRIRCPF----EKPSNLHFKPQTKT 281 (314)
T ss_dssp EEEEE--ECCC-----CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS-CSEEEECSS----SCEEEEEECTTSSE
T ss_pred ceEEE--ECCC-----CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc-EeEEEeCCC----CCceeEEECCCCCE
Confidence 110 0110 11 358999999999999999889999999998432 444454332 4589999999997
Q ss_pred EEEEecCCCeEEEEEcC
Q 039428 265 LVVAGNPYPSARLVESS 281 (335)
Q Consensus 265 l~va~~~~~~~~v~~~~ 281 (335)
||+++...+++.+++..
T Consensus 282 l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 282 IFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEETTTTEEEEEECS
T ss_pred EEEEeCCCCeEEEEeCC
Confidence 99997755678777754
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-13 Score=120.89 Aligned_cols=227 Identities=13% Similarity=0.085 Sum_probs=155.0
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCC
Q 039428 59 VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW 138 (335)
Q Consensus 59 ~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~ 138 (335)
.+++++++..+++|+.+|..+|+ ++.+ + ..+. ...++.+.+++ +|++|++ .+ ..|+.||+ ++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~----~~w~--~-~~~~--~~~~~~~~~~p-dG~ilvs-~~------~~V~~~d~-~G 65 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKE----IVWE--Y-PLEK--GWECNSVAATK-AGEILFS-YS------KGAKMITR-DG 65 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTE----EEEE--E-ECCT--TCCCCEEEECT-TSCEEEE-CB------SEEEEECT-TS
T ss_pred CCcEEEeeCCCCEEEEEECCCCe----EEEE--e-CCCc--cCCCcCeEECC-CCCEEEe-CC------CCEEEECC-CC
Confidence 35677777778999999965676 1221 1 1111 12578999997 8899993 22 46999999 67
Q ss_pred eEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-CCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCe
Q 039428 139 KRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGF 217 (335)
Q Consensus 139 ~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~ 217 (335)
++++...... ....+.+.+.++|+++|++.. +++|+.++++|+.+..+.-.. +.......+.+++++++|+
T Consensus 66 ~~~W~~~~~~----~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~----~~~~~~~~~~~v~~~~~G~ 137 (276)
T 3no2_A 66 RELWNIAAPA----GCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFET----GIERPHAQFRQINKNKKGN 137 (276)
T ss_dssp CEEEEEECCT----TCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECC----SCSSGGGSCSCCEECTTSC
T ss_pred CEEEEEcCCC----CccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccC----CCCcccccccCceECCCCC
Confidence 7776655421 124567889999999999988 899999999998876442110 0001223478899999999
Q ss_pred EEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEee-eecCC
Q 039428 218 LIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVA-KFNGP 296 (335)
Q Consensus 218 Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~-~~~~p 296 (335)
+++++..+++|+.+|+++. .+..+... ..|.++.+.++|++++++...+.+..++...+-..-+... .+...
T Consensus 138 ~lv~~~~~~~v~~~d~~G~--~~w~~~~~-----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 138 YLVPLFATSEVREIAPNGQ--LLNSVKLS-----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp EEEEETTTTEEEEECTTSC--EEEEEECS-----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred EEEEecCCCEEEEECCCCC--EEEEEECC-----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 9999999999999999954 55555532 2488999999999999976445666676654511111111 12222
Q ss_pred CCCcceEEEEe-CCeEEEEeccC
Q 039428 297 THRVATAATVK-DGRVYLSHLLG 318 (335)
Q Consensus 297 ~~~~Pt~va~~-~g~lyV~~~~~ 318 (335)
.+..|+++++. +|++||++.-|
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECT
T ss_pred cccccccceEcCCCCEEEEeccC
Confidence 35668898885 99999977533
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.3e-13 Score=117.09 Aligned_cols=194 Identities=13% Similarity=0.158 Sum_probs=130.4
Q ss_pred cCCCcceeeeEEcCCCCEEEEEecC--CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 45 HSPSFLCETAKWDDVGRRFLVSFLD--GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 45 ~~~~~~pegia~d~~g~~~~~~~~~--~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
+....+-+|+.++ ++.+|..+... .+|.++|..+++ ++.+ . ..+.. -...||+++ +++||+++ .
T Consensus 39 hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk----v~~~--~-~l~~~--~FgeGit~~--g~~ly~lt--w 104 (262)
T 3nol_A 39 HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK----TLQQ--I-ELGKR--YFGEGISDW--KDKIVGLT--W 104 (262)
T ss_dssp CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC----EEEE--E-ECCTT--CCEEEEEEE--TTEEEEEE--S
T ss_pred CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCc----EEEE--E-ecCCc--cceeEEEEe--CCEEEEEE--e
Confidence 3455677999999 56554444444 489999976665 3332 2 22221 123578887 68999964 3
Q ss_pred CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCcccccccc
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWY 201 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~ 201 (335)
.. +.+++||+++.+++..++.+ ...++++.| .+++|++|. +++|+.+|+++ +....+.... . .
T Consensus 105 ~~---~~v~v~D~~t~~~~~ti~~~------~eG~glt~d-g~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~--~---g 168 (262)
T 3nol_A 105 KN---GLGFVWNIRNLRQVRSFNYD------GEGWGLTHN-DQYLIMSDG-TPVLRFLDPESLTPVRTITVTA--H---G 168 (262)
T ss_dssp SS---SEEEEEETTTCCEEEEEECS------SCCCCEEEC-SSCEEECCS-SSEEEEECTTTCSEEEEEECEE--T---T
T ss_pred eC---CEEEEEECccCcEEEEEECC------CCceEEecC-CCEEEEECC-CCeEEEEcCCCCeEEEEEEecc--C---C
Confidence 22 46999999999888655542 244667754 257999985 78999999985 4433222110 0 0
Q ss_pred ccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCC--------cCCCCCCeEEEcCCC-cEEEEec
Q 039428 202 KNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGG--------SSLSLGDGLALLSPT-KLVVAGN 270 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~--------~~~~~pdGia~d~~g-~l~va~~ 270 (335)
.....+|.+.+. +|.||++...++.|.+||+.+++ ....++..+- .....|.|||+|+++ +|||++-
T Consensus 169 ~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~-V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 169 EELPELNELEWV-DGEIFANVWQTNKIVRIDPETGK-VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCB-EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ccccccceeEEE-CCEEEEEEccCCeEEEEECCCCc-EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 012347888887 89999999999999999999986 6677776431 112468999999874 7999943
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.59 E-value=6e-13 Score=117.26 Aligned_cols=191 Identities=16% Similarity=0.141 Sum_probs=130.7
Q ss_pred CCCcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCC
Q 039428 46 SPSFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLG 124 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~ 124 (335)
....+-+|+.++. + .+|.+ ...++|.++|..+++ ++.+ .+ .+.. ...|++++ +++||+++ ...
T Consensus 52 d~~~ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgk----v~~~--~l-~~~~---FgeGit~~--g~~Ly~lt--w~~ 115 (268)
T 3nok_A 52 ATNAFTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQ----PVWM--ER-LGNI---FAEGLASD--GERLYQLT--WTE 115 (268)
T ss_dssp CTTCCEEEEEEET-T-EEEEEETTTTEEEECCSSCSS----CSEE--EE-CTTC---CEEEEEEC--SSCEEEEE--SSS
T ss_pred CCccccceEEEEC-C-EEEEEcCCCCEEEEEECCCCc----EEeE--EC-CCCc---ceeEEEEe--CCEEEEEE--ccC
Confidence 4455679999984 4 55555 667889999977666 2332 22 2211 23568876 68999964 322
Q ss_pred CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCcccccccccc
Q 039428 125 NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 125 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~ 203 (335)
+.+++||+++.+++..+... ..+++++.|. +++|++| .+++|+.+|+++. ....+.... . ...
T Consensus 116 ---~~v~V~D~~Tl~~~~ti~~~------~eGwGLt~Dg-~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~--~---g~~ 179 (268)
T 3nok_A 116 ---GLLFTWSGMPPQRERTTRYS------GEGWGLCYWN-GKLVRSD-GGTMLTFHEPDGFALVGAVQVKL--R---GQP 179 (268)
T ss_dssp ---CEEEEEETTTTEEEEEEECS------SCCCCEEEET-TEEEEEC-SSSEEEEECTTTCCEEEEEECEE--T---TEE
T ss_pred ---CEEEEEECCcCcEEEEEeCC------CceeEEecCC-CEEEEEC-CCCEEEEEcCCCCeEEEEEEeCC--C---Ccc
Confidence 46999999999888665542 2356777653 4799999 5899999999863 333221110 0 011
Q ss_pred ccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccC---------CcCCCCCCeEEEcCC-CcEEEEec
Q 039428 204 VFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRG---------GSSLSLGDGLALLSP-TKLVVAGN 270 (335)
Q Consensus 204 ~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g---------~~~~~~pdGia~d~~-g~l~va~~ 270 (335)
...+|.+.+. +|.||++...++.|.+||+.+++ ....+++.+ ......|.|||+|++ ++|||++-
T Consensus 180 v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~-V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 180 VELINELECA-NGVIYANIWHSSDVLEIDPATGT-VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB-EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred cccccccEEe-CCEEEEEECCCCeEEEEeCCCCc-EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 2357899988 88999999999999999999885 667777542 011246899999987 48999943
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-12 Score=113.19 Aligned_cols=203 Identities=18% Similarity=0.198 Sum_probs=134.6
Q ss_pred cCCCcceeeeEEcCCCCEEEEEec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 45 HSPSFLCETAKWDDVGRRFLVSFL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 45 ~~~~~~pegia~d~~g~~~~~~~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
+....+-+|+.++. +.+|..+.. .++|.++|..+++ ++. .+..+... ...|++++ +++||+++ .
T Consensus 17 hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk----v~~---~~~l~~~~--fgeGi~~~--~~~ly~lt--w 82 (243)
T 3mbr_X 17 HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGR----ILQ---RAEVPPPY--FGAGIVAW--RDRLIQLT--W 82 (243)
T ss_dssp CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCC----EEE---EEECCTTC--CEEEEEEE--TTEEEEEE--S
T ss_pred CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCC----EEE---EEeCCCCc--ceeEEEEe--CCEEEEEE--e
Confidence 45566889999987 444444433 3589999986665 233 22223211 33577776 69999964 3
Q ss_pred CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCcccccccc
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWY 201 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~ 201 (335)
.. +.+++||+++.+++..+... ..+++++-| .+++|++|. +++|+.+|++.. ....+.... . .
T Consensus 83 ~~---~~v~v~D~~tl~~~~ti~~~------~~Gwglt~d-g~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~--~---g 146 (243)
T 3mbr_X 83 RN---HEGFVYDLATLTPRARFRYP------GEGWALTSD-DSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTA--G---G 146 (243)
T ss_dssp SS---SEEEEEETTTTEEEEEEECS------SCCCEEEEC-SSCEEEECS-SSEEEEECTTTCCEEEEEECEE--T---T
T ss_pred eC---CEEEEEECCcCcEEEEEeCC------CCceEEeeC-CCEEEEECC-CCeEEEEeCCCCeEEEEEEEcc--C---C
Confidence 33 46999999999888655542 245677654 357999995 899999999863 333222110 0 0
Q ss_pred ccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCC---------cCCCCCCeEEEcCC-CcEEEEecC
Q 039428 202 KNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGG---------SSLSLGDGLALLSP-TKLVVAGNP 271 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~---------~~~~~pdGia~d~~-g~l~va~~~ 271 (335)
.....+|.+.+. +|.||++...++.|.+||+.+++ ....+++.+- .....|.|||+|++ ++|||++-.
T Consensus 147 ~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~-V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 147 RPLDNLNELEWV-NGELLANVWLTSRIARIDPASGK-VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCB-EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred cccccceeeEEe-CCEEEEEECCCCeEEEEECCCCC-EEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 012347888877 88999999999999999999986 6677775431 11246899999987 489999431
Q ss_pred CCeEEEEE
Q 039428 272 YPSARLVE 279 (335)
Q Consensus 272 ~~~~~v~~ 279 (335)
=+.+.-++
T Consensus 225 wp~~~~v~ 232 (243)
T 3mbr_X 225 WPMLYEIR 232 (243)
T ss_dssp CSEEEEEE
T ss_pred CCcEEEEE
Confidence 14444343
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.5e-14 Score=130.59 Aligned_cols=201 Identities=16% Similarity=0.217 Sum_probs=126.0
Q ss_pred CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC----CcEEEEeCCC--
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE----GNAYVTDVVS-- 174 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~----G~lyV~d~~~-- 174 (335)
..|.+|++++ +|+|||+ +.. ++|++++ .++......++....+...|++|+++|+ |.+||+++..
T Consensus 31 ~~P~~ia~~p-dG~l~V~--e~~----g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~ 101 (352)
T 2ism_A 31 EVPWALAFLP-DGGMLIA--ERP----GRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG 101 (352)
T ss_dssp SCEEEEEECT-TSCEEEE--ETT----TEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT
T ss_pred CCceEEEEcC-CCeEEEE--eCC----CeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC
Confidence 3789999997 7899995 443 3699998 3443322223211123578999999998 7899998764
Q ss_pred ---CeEEEEccCCcE----EEEecCCccccccccccccccCeEEEccCCeEEEEECC-------------CCEEEEEeCC
Q 039428 175 ---SKIWKVGVEGQL----LSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC-------------SGNLFKIDIR 234 (335)
Q Consensus 175 ---~~I~~~d~~g~~----~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~-------------~~~v~~~d~~ 234 (335)
++|++++.++.. ..++.. + |........+++|+++|||+||+++.. .++|+|++++
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~l~~~--~--p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~d 177 (352)
T 2ism_A 102 GLRNQVVRLRHLGERGVLDRVVLDG--I--PARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPE 177 (352)
T ss_dssp SSEEEEEEEEECSSCEEEEEEEEEE--E--CCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTT
T ss_pred CCccEEEEEEeCCCCcCceEEEEEe--C--CCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCC
Confidence 799999987531 111210 1 100112345899999999999999742 3799999998
Q ss_pred CCc-----------eeEEEEeccCCcCCCCCCeEEEcC-CCcEEEEecCCCe--------EEEEEcCC--CcEEEE----
Q 039428 235 KEE-----------EEVKLIELRGGSSLSLGDGLALLS-PTKLVVAGNPYPS--------ARLVESSD--GWETAS---- 288 (335)
Q Consensus 235 ~~~-----------~~~~~~~~~g~~~~~~pdGia~d~-~g~l~va~~~~~~--------~~v~~~~~--~~~~~~---- 288 (335)
+.- ...+.+.. | +..|.|+++|+ +|+||+++.+.+. +.++.... +|...+
T Consensus 178 G~~p~~npf~~~~~~~~~i~a~-G---~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~ 253 (352)
T 2ism_A 178 GEPAPGNPFLGRRGARPEVYSL-G---HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGN 253 (352)
T ss_dssp SSBCTTCTTTTCTTSCTTEEEE-C---CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCC
T ss_pred CCCCCCCcccCCCCCCccEEEE-c---CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCC
Confidence 720 02233432 2 45699999999 7899999775444 33333221 121000
Q ss_pred ----EeeeecCCCCCcceEEEEeCCeEEEEeccC
Q 039428 289 ----VVAKFNGPTHRVATAATVKDGRVYLSHLLG 318 (335)
Q Consensus 289 ----~~~~~~~p~~~~Pt~va~~~g~lyV~~~~~ 318 (335)
.......+.+..|+++++-+|++||++..+
T Consensus 254 ~~~~~~p~~~~~~~~ap~G~~~~~G~l~v~~~~~ 287 (352)
T 2ism_A 254 DPRYRDPLYFWPQGFPPGNLAFFRGDLYVAGLRG 287 (352)
T ss_dssp CTTSCCCSEECTTCCCEEEEEEETTEEEEEETTT
T ss_pred CCCCcCCeEecCCCCCCcceEEECCEEEEEECCC
Confidence 001112233456889999889999977544
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.9e-12 Score=116.85 Aligned_cols=222 Identities=15% Similarity=0.184 Sum_probs=154.0
Q ss_pred cceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 49 FLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
..+.+++|+++|+.++++ ..++.|..||..+++ ++. .+..+ ..+.++++++++..||++..+.
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~----~~~---~~~~~----~~v~~~~~spdg~~l~~~~~~~----- 95 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN----VIA---TVPAG----SSPQGVAVSPDGKQVYVTNMAS----- 95 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE----EEE---EEECS----SSEEEEEECTTSSEEEEEETTT-----
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCe----EEE---EEECC----CCccceEECCCCCEEEEEECCC-----
Confidence 348999999999977666 678999999965454 122 22222 2678999998666687753221
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcE-EEEecCCcccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~~~~~~~~ 205 (335)
..|.+||.++++....... ...+.+++++++|+ +|++....+.|+.+|..... ...+. ...
T Consensus 96 ~~v~v~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-----------~~~ 158 (391)
T 1l0q_A 96 STLSVIDTTSNTVAGTVKT------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-----------VGR 158 (391)
T ss_dssp TEEEEEETTTTEEEEEEEC------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----------CCS
T ss_pred CEEEEEECCCCeEEEEEeC------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe-----------cCC
Confidence 3699999999887644432 24578999999986 88999989999999986543 33221 123
Q ss_pred ccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEec--CCCeEEEEEcC
Q 039428 206 GLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGN--PYPSARLVESS 281 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~--~~~~~~v~~~~ 281 (335)
.+.+++++|+| .||++...+++|+.+|+..++ ....+... ..+.++++.++|+ +|+++. ..+.+++++..
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~-----~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDTVKVE-----AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECS-----SEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-EEEEEecC-----CCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence 47899999999 788999999999999998873 44444422 2378999999985 666653 44778888876
Q ss_pred CCcEEEEEeeeecCCCCCcceEEEEe--CCeEEEEe
Q 039428 282 DGWETASVVAKFNGPTHRVATAATVK--DGRVYLSH 315 (335)
Q Consensus 282 ~~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~ 315 (335)
.+ +....+.. ...|.++++. +..||++.
T Consensus 233 ~~----~~~~~~~~--~~~~~~~~~s~dg~~l~~s~ 262 (391)
T 1l0q_A 233 TN----KITARIPV--GPDPAGIAVTPDGKKVYVAL 262 (391)
T ss_dssp TT----EEEEEEEC--CSSEEEEEECTTSSEEEEEE
T ss_pred CC----eEEEEEec--CCCccEEEEccCCCEEEEEc
Confidence 54 22223322 2336677774 44577754
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-12 Score=118.89 Aligned_cols=220 Identities=14% Similarity=0.128 Sum_probs=139.3
Q ss_pred EEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEE
Q 039428 55 KWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAY 133 (335)
Q Consensus 55 a~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~ 133 (335)
.++.+++.+|++ ..+++|.++|..+++ +.. .+..+ ...+ ++++++++..+|++..+. ..|++|
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~----~~~---~~~~~---~~~~-~~~~s~dg~~l~~~~~~~-----~~i~~~ 67 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLE----ILN---QITLG---YDFV-DTAITSDCSNVVVTSDFC-----QTLVQI 67 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCC----EEE---EEECC---CCEE-EEEECSSSCEEEEEESTT-----CEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccc----eee---eEEcc---CCcc-eEEEcCCCCEEEEEeCCC-----CeEEEE
Confidence 456666766666 778999999965554 122 22222 1346 999998555688864321 369999
Q ss_pred ECCCCeE-EEEeecCCCccCCCCCCc-eeECCCCc-EEEEeCCCC--eEEEEccCCcEE-EEecCCcccccccccccccc
Q 039428 134 DLSTWKR-LFLTQLSGKSEEKSTADD-IAVDAEGN-AYVTDVVSS--KIWKVGVEGQLL-SIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 134 d~~~~~~-~~~~~~~~~~~~~~~p~~-~~vd~~G~-lyV~d~~~~--~I~~~d~~g~~~-~~~~~~~~~~~~~~~~~~~p 207 (335)
|++++++ ...... ...|.. ++++|+|+ +|+++..++ .|+++|.+.... ..+. ....|
T Consensus 68 d~~~~~~~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-----------~~~~~ 130 (331)
T 3u4y_A 68 ETQLEPPKVVAIQE------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-----------IPYDA 130 (331)
T ss_dssp ECSSSSCEEEEEEE------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-----------CCTTE
T ss_pred ECCCCceeEEeccc------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE-----------CCCCc
Confidence 9998876 432222 345667 99999997 664333334 899999875443 3221 12348
Q ss_pred CeEEEccCC-eEEEEECCCCE-EEEEeCCCCcee----EEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEc
Q 039428 208 NGIVYHPDG-FLIVIHMCSGN-LFKIDIRKEEEE----VKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVES 280 (335)
Q Consensus 208 ~Gia~~~dg-~Lyvad~~~~~-v~~~d~~~~~~~----~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~ 280 (335)
++++++||| +||+++...++ |..++++..+.. .+.+. .+ ..|.+++++++|+ +|+++...+.+.+++.
T Consensus 131 ~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 205 (331)
T 3u4y_A 131 VGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS-GG----TRPFNITFTPDGNFAFVANLIGNSIGILET 205 (331)
T ss_dssp EEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC-SS----SSEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred cceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc-CC----CCccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence 999999999 79999988777 777777654211 11221 12 3489999999996 8999776678999887
Q ss_pred CCCcEEEEEeeeecCCCCCcceEEEEe-CC-eEEEEe
Q 039428 281 SDGWETASVVAKFNGPTHRVATAATVK-DG-RVYLSH 315 (335)
Q Consensus 281 ~~~~~~~~~~~~~~~p~~~~Pt~va~~-~g-~lyV~~ 315 (335)
..+-. .+....+. ....|.++++. +| .||++.
T Consensus 206 ~~~~~-~~~~~~~~--~~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 206 QNPEN-ITLLNAVG--TNNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp SSTTS-CEEEEEEE--CSSCCCCEEECTTSSEEEEEC
T ss_pred CCCcc-cceeeecc--CCCCCceEEECCCCCEEEEEE
Confidence 65522 01122232 23456788885 44 488754
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6.9e-12 Score=115.56 Aligned_cols=245 Identities=10% Similarity=0.094 Sum_probs=145.6
Q ss_pred CCcceeeeEEcCCCCEEEEEec----CCeE--EEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEe
Q 039428 47 PSFLCETAKWDDVGRRFLVSFL----DGGV--GQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFT 120 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~~----~~~I--~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~ 120 (335)
....|..++|+|+|+.+|+... ++.| +.++..++. +.. +...+. .+..|..++++ ++.||+++
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~-----~~~--~~~~~~-~~~~p~~~~~d--g~~l~~~~- 116 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT-----LHL--LNTQKT-MGADPCYLTTN--GKNIVTAN- 116 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE-----EEE--EEEEEC-SSSCEEEEEEC--SSEEEEEE-
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc-----EEE--eeEecc-CCCCcEEEEEC--CCEEEEEE-
Confidence 3456889999999997777733 3676 455532243 221 111111 12467888883 67888854
Q ss_pred cCCCCccceEEEEECCCC-eEE---EEeecCCCc-----cCCCCCCceeECCCCc-EEEEeCCCCeEEEEccC--Cc---
Q 039428 121 DVLGNKYSALAAYDLSTW-KRL---FLTQLSGKS-----EEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVE--GQ--- 185 (335)
Q Consensus 121 D~~~~~~~~v~~~d~~~~-~~~---~~~~~~~~~-----~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~--g~--- 185 (335)
... +.|.+|+.+.. .+. ......+.+ +....++.++++|+|+ +|+++...+.|++++.+ +.
T Consensus 117 -~~~---~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~ 192 (361)
T 3scy_A 117 -YSG---GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADN 192 (361)
T ss_dssp -TTT---TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTT
T ss_pred -CCC---CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccc
Confidence 222 35888887643 221 111111100 1134467899999997 99999888888877654 32
Q ss_pred ---EEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEE---EeccCCcCCCCCCeEE
Q 039428 186 ---LLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKL---IELRGGSSLSLGDGLA 258 (335)
Q Consensus 186 ---~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~---~~~~g~~~~~~pdGia 258 (335)
....-...... .....+|++++++||| +||+++..+++|.+++++.+ .... +.... .....|.+++
T Consensus 193 ~~~l~~~~~~~~~~----~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g--~~~~~~~~~~~~-~~~~~~~~i~ 265 (361)
T 3scy_A 193 KEKFLTKGTPEAFK----VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG--MLDEIQTVAADT-VNAQGSGDIH 265 (361)
T ss_dssp CCCCEEEEEEEEEE----CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT--EEEEEEEEESCS-SCCCCEEEEE
T ss_pred ccceeeccccccee----cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC--ceEEeEEEecCC-CCCCCcccEE
Confidence 21100000000 0123458899999999 79999988999999998865 3322 22211 1134577999
Q ss_pred EcCCCc-EEEEecC-CCeEEEEEcCC-CcEEEEEeeeecCCCCCcceEEEEe-C-CeEEEEec
Q 039428 259 LLSPTK-LVVAGNP-YPSARLVESSD-GWETASVVAKFNGPTHRVATAATVK-D-GRVYLSHL 316 (335)
Q Consensus 259 ~d~~g~-l~va~~~-~~~~~v~~~~~-~~~~~~~~~~~~~p~~~~Pt~va~~-~-g~lyV~~~ 316 (335)
++++|+ ||+++.. .+.+.+++.+. ..+ .+....+.. ...|.++++. + ..||++..
T Consensus 266 ~spdg~~l~v~~~~~~~~i~v~~~~~~~g~-~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~ 325 (361)
T 3scy_A 266 LSPDGKYLYASNRLKADGVAIFKVDETNGT-LTKVGYQLT--GIHPRNFIITPNGKYLLVACR 325 (361)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEEECTTTCC-EEEEEEEEC--SSCCCEEEECTTSCEEEEEET
T ss_pred ECCCCCEEEEECCCCCCEEEEEEEcCCCCc-EEEeeEecC--CCCCceEEECCCCCEEEEEEC
Confidence 999996 7788765 57788877642 111 122333322 3457789985 4 45888653
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.3e-12 Score=113.09 Aligned_cols=212 Identities=16% Similarity=0.166 Sum_probs=145.0
Q ss_pred hhhhhhcCCCceeEEEc--CCC-cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcce
Q 039428 29 ELAIAMAKPATHVYQYH--SPS-FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMG 105 (335)
Q Consensus 29 ~~~~~~~d~~~~~~~~~--~~~-~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~G 105 (335)
...+.+.|..+..+.+. ... ..+.+++++++|++++ + .++.|+.+|+ +++ ++.+ + ..+. ....++
T Consensus 14 ~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s-~~~~V~~~d~-~G~----~~W~--~-~~~~--~~~~~~ 81 (276)
T 3no2_A 14 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-S-YSKGAKMITR-DGR----ELWN--I-AAPA--GCEMQT 81 (276)
T ss_dssp CSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-E-CBSEEEEECT-TSC----EEEE--E-ECCT--TCEEEE
T ss_pred CCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-e-CCCCEEEECC-CCC----EEEE--E-cCCC--Cccccc
Confidence 34445556655554442 222 3578999999999887 3 4678999986 676 2221 2 1221 113456
Q ss_pred EEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCC-ccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC
Q 039428 106 IAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGK-SEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG 184 (335)
Q Consensus 106 i~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g 184 (335)
..+.+ +|+++++..+. . .+|+.+|+++ +.++...+... ......+..++++++|+++|++..+++|+.+|++|
T Consensus 82 ~~~~~-dG~~lv~~~~~-~---~~v~~vd~~G-k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G 155 (276)
T 3no2_A 82 ARILP-DGNALVAWCGH-P---STILEVNMKG-EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNG 155 (276)
T ss_dssp EEECT-TSCEEEEEEST-T---EEEEEECTTS-CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTS
T ss_pred cEECC-CCCEEEEecCC-C---CEEEEEeCCC-CEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCC
Confidence 77776 78888853321 1 4699999854 44433333211 01135678899999999999999999999999999
Q ss_pred cEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccC--CcCCCCCCeEEEcCC
Q 039428 185 QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRG--GSSLSLGDGLALLSP 262 (335)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g--~~~~~~pdGia~d~~ 262 (335)
+.+..++.+ ..|.++++.++|++++++..+++|+.+|+++++ .+..+...+ ...+..|.++++.++
T Consensus 156 ~~~w~~~~~-----------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~-~~w~~~~~~~~~~~l~~~~~~~~~~~ 223 (276)
T 3no2_A 156 QLLNSVKLS-----------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR-IVRRVNANDIEGVQLFFVAQLFPLQN 223 (276)
T ss_dssp CEEEEEECS-----------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCC-EEEEEEGGGSBSCCCSEEEEEEECTT
T ss_pred CEEEEEECC-----------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc-EEEEecCCCCCCccccccccceEcCC
Confidence 887654321 237889999999999999999999999999553 555554221 123566899999999
Q ss_pred CcEEEEec
Q 039428 263 TKLVVAGN 270 (335)
Q Consensus 263 g~l~va~~ 270 (335)
|++||++.
T Consensus 224 G~i~v~~~ 231 (276)
T 3no2_A 224 GGLYICNW 231 (276)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEec
Confidence 99999974
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-12 Score=121.65 Aligned_cols=237 Identities=8% Similarity=-0.020 Sum_probs=141.2
Q ss_pred hhhhhhhhhhhhhhhcCCCceeEE-Ec--------------CCCcceeeeEEcCC---CCEEEEE-ec---C----CeEE
Q 039428 20 IPIAYIISIELAIAMAKPATHVYQ-YH--------------SPSFLCETAKWDDV---GRRFLVS-FL---D----GGVG 73 (335)
Q Consensus 20 ~p~~~~~~~~~~~~~~d~~~~~~~-~~--------------~~~~~pegia~d~~---g~~~~~~-~~---~----~~I~ 73 (335)
.|.++++..++.+++++.. .+|. +. .....|.|++++|+ ++.+|++ .. + ++|+
T Consensus 30 ~P~~ia~~pdG~l~V~e~~-g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTERP-GRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp CEEEEEEEETTEEEEEETT-TEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CCeEEEEcCCCeEEEEeCC-CEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 3566666666666666544 2221 11 11235899999997 4455555 42 3 6899
Q ss_pred EEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeEEEEEecCCCC--------ccceEEEEECCCC------
Q 039428 74 QVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRLLVAFTDVLGN--------KYSALAAYDLSTW------ 138 (335)
Q Consensus 74 ~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~--------~~~~v~~~d~~~~------ 138 (335)
+++..++.. .+.+...++. .+....+.+.+|++++ +|.||++..|.... ...+|+++|+++.
T Consensus 109 r~~~~~~~~--~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 109 RGRLDGSTF--KLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEECSSSC--CEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEECCCCc--CcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 998543310 0111111222 2221124578999997 78999976543210 1147999998754
Q ss_pred --e-EEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCCC---eEEEEccCCcEEE--Eec---CCcccccccc--ccc
Q 039428 139 --K-RLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSS---KIWKVGVEGQLLS--IIR---SPLFTAKEWY--KNV 204 (335)
Q Consensus 139 --~-~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~---~I~~~d~~g~~~~--~~~---~~~~~~~~~~--~~~ 204 (335)
. .++. .++..|+++++|+ +|++|++|...+ .|.++.+.+..-. ..+ .+.+..|... ...
T Consensus 186 f~~~~i~a-------~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ 258 (354)
T 3a9g_A 186 FPNSPIWS-------YGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET 258 (354)
T ss_dssp STTCCEEE-------ECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred CCCCcEEE-------EccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence 1 1111 1257899999999 799999998764 4777765432100 000 0011111100 123
Q ss_pred cccCeEEE-------ccCCeEEEEECCCCEEEEEeCCCCceeE--EEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 205 FGLNGIVY-------HPDGFLIVIHMCSGNLFKIDIRKEEEEV--KLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 205 ~~p~Gia~-------~~dg~Lyvad~~~~~v~~~d~~~~~~~~--~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
..|.|+++ +.+|.||+++...++|++++++..+... +.+ +.+ . ...|.++++++||.|||++.
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~-~~~-~-~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTF-FKN-V-FGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEE-CTT-T-SCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeee-ccC-C-CCCeeEEEECCCCcEEEEEe
Confidence 46999999 4578999999999999999998642121 222 122 1 35699999999999999965
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.55 E-value=9e-12 Score=116.50 Aligned_cols=232 Identities=10% Similarity=-0.035 Sum_probs=134.5
Q ss_pred CcceeeeEEcCCCCEEEEEe----------cCCeEEEEECCCCCCCcceeeeeEEeecC--C--cCCCCcceEEEeCCCC
Q 039428 48 SFLCETAKWDDVGRRFLVSF----------LDGGVGQVLVPDEYSPGTVLEEVKLVKED--D--VVGNATMGIAVDRPRN 113 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~----------~~~~I~~~d~~~g~~~~~v~~~~~~~~~~--~--~~~~~p~Gi~~d~~~g 113 (335)
+..| +++++|+|+.+|++. .++.|.++|..+.+ ++.+ +..+ . ..+..|.+++++|+++
T Consensus 66 g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~----~~~~---i~~~~~~~~~~g~~p~~~~~spDG~ 137 (373)
T 2mad_H 66 GFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL----PIAD---IELPDAPRFDVGPYSWMNANTPNNA 137 (373)
T ss_pred CCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc----EEEE---EECCCccccccCCCccceEECCCCC
Confidence 4568 999999999888883 24679999964333 2332 2222 1 0124688999999788
Q ss_pred eEEEEEecCCCCccceEEEEECCCCeEEEE-eecCCCccCCCCCCc----eeECCCC-----------------------
Q 039428 114 RLLVAFTDVLGNKYSALAAYDLSTWKRLFL-TQLSGKSEEKSTADD----IAVDAEG----------------------- 165 (335)
Q Consensus 114 ~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~~~~~p~~----~~vd~~G----------------------- 165 (335)
.||+++.... +.|.++| +++++... ++.+.. ....|.+ +++.++|
T Consensus 138 ~l~v~n~~~~----~~v~viD-~t~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~ 210 (373)
T 2mad_H 138 DLLFFQFAAG----PAVGLVV-QGGSSDDQLLSSPTC--YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTA 210 (373)
T ss_pred EEEEEecCCC----CeEEEEE-CCCCEEeEEcCCCce--EEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccC
Confidence 8999753211 4599999 99887655 443210 0001111 1112222
Q ss_pred ---------------cEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe---EEEccCC-eEEEEEC---
Q 039428 166 ---------------NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG---IVYHPDG-FLIVIHM--- 223 (335)
Q Consensus 166 ---------------~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G---ia~~~dg-~Lyvad~--- 223 (335)
.+|+.. ..+.++++|..+....++..-.+...........|.| +++++|+ +|||+..
T Consensus 211 ~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~ 289 (373)
T 2mad_H 211 AQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS 289 (373)
T ss_pred CcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCC
Confidence 223322 3445666665433222111000000000012223566 8999998 9999864
Q ss_pred ------CCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc--EEEEecCCCeEEEEEcCCCcEEEEEeeeecC
Q 039428 224 ------CSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK--LVVAGNPYPSARLVESSDGWETASVVAKFNG 295 (335)
Q Consensus 224 ------~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~--l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~ 295 (335)
.++.|++||..+.+ .+..+...+ .|+++++++||+ +|+++.+++.+.|++...+ +...++ .
T Consensus 290 ~~~~~~~~~~V~VID~~t~~-vv~~i~~g~-----~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~----~vv~~i-~ 358 (373)
T 2mad_H 290 AWKLHAAAKEVTSVTGLVGQ-TSSQISLGH-----DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG----DQDQST-V 358 (373)
T ss_pred cccccCCCCeEEEEECCCCE-EEEEEECCC-----CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC----CEEeee-c
Confidence 24689999999874 556676532 499999999987 6666656789999997654 333332 1
Q ss_pred CCCCcceEEEE
Q 039428 296 PTHRVATAATV 306 (335)
Q Consensus 296 p~~~~Pt~va~ 306 (335)
+.+..|..+..
T Consensus 359 ~vG~~P~~~~~ 369 (373)
T 2mad_H 359 ELGSGPQVLSV 369 (373)
T ss_pred CCCCCCcEEEE
Confidence 23445666654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-11 Score=112.17 Aligned_cols=243 Identities=10% Similarity=0.072 Sum_probs=146.2
Q ss_pred CcceeeeEEcCCCCEEEEEec-CCeEEEEECC--CCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCC
Q 039428 48 SFLCETAKWDDVGRRFLVSFL-DGGVGQVLVP--DEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLG 124 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~-~~~I~~~d~~--~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~ 124 (335)
...|.+++|+++|+.+++... ++.|..|+.. ++. ... +...+. ...+.++++++++..||++..+ .
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~-----~~~--~~~~~~--~~~~~~~~~s~dg~~l~~~~~~--~ 105 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA-----LTF--AAESAL--PGSLTHISTDHQGQFVFVGSYN--A 105 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC-----EEE--EEEEEC--SSCCSEEEECTTSSEEEEEETT--T
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc-----eee--cccccc--CCCCcEEEEcCCCCEEEEEecC--C
Confidence 346889999999997777744 4888887643 233 121 111111 1267899999855568785321 1
Q ss_pred CccceEEEEECCCCeEE-EEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCC--cEEEEecCCccccccc
Q 039428 125 NKYSALAAYDLSTWKRL-FLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEG--QLLSIIRSPLFTAKEW 200 (335)
Q Consensus 125 ~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g--~~~~~~~~~~~~~~~~ 200 (335)
+.|..||.+.+... ...... ....+++++++++|+ +|+++...+.|++++.+. +...... ..+..
T Consensus 106 ---~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~--- 174 (343)
T 1ri6_A 106 ---GNVSVTRLEDGLPVGVVDVVE----GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP-AEVTT--- 174 (343)
T ss_dssp ---TEEEEEEEETTEEEEEEEEEC----CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE-EEEEC---
T ss_pred ---CeEEEEECCCCcccccccccc----CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecc-ccccc---
Confidence 35888888433221 111121 134688999999985 999987888999988753 3322110 00110
Q ss_pred cccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCcee---EEEEec-cCC-cCCCCCCeEEEcCCC-cEEEEecCCC
Q 039428 201 YKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEE---VKLIEL-RGG-SSLSLGDGLALLSPT-KLVVAGNPYP 273 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~---~~~~~~-~g~-~~~~~pdGia~d~~g-~l~va~~~~~ 273 (335)
.....|.+++++|+| +||+++..+++|..++++...+. ...+.. ... .....|.+++++++| .+|+++...+
T Consensus 175 -~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~ 253 (343)
T 1ri6_A 175 -VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS 253 (343)
T ss_dssp -STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred -CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC
Confidence 112358899999999 69999989999999998642112 222321 110 001235579999998 4777776557
Q ss_pred eEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe--CCeEEEEe
Q 039428 274 SARLVESSDGWETASVVAKFNGPTHRVATAATVK--DGRVYLSH 315 (335)
Q Consensus 274 ~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~ 315 (335)
.+.+++........+....+... ..|.++++. +..||++.
T Consensus 254 ~i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 254 LITVFSVSEDGSVLSKEGFQPTE--TQPRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp EEEEEEECTTSCCEEEEEEEECS--SSCCCEEECTTSSEEEEEC
T ss_pred EEEEEEEcCCCCceEEeeeecCC--CccceEEECCCCCEEEEec
Confidence 78888876321112233333222 227788885 44577755
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-12 Score=113.16 Aligned_cols=189 Identities=14% Similarity=0.088 Sum_probs=130.3
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d 181 (335)
-.+|+.++ +++||+++.... . +.|.++|++++++.....++. ..+..+++++ .+++|+.++..+.++++|
T Consensus 22 ftqGL~~~--~~~LyestG~~g-~--S~v~~vD~~tgkv~~~~~l~~----~~fgeGi~~~-~~~ly~ltw~~~~v~v~D 91 (243)
T 3mbr_X 22 FTEGLFYL--RGHLYESTGETG-R--SSVRKVDLETGRILQRAEVPP----PYFGAGIVAW-RDRLIQLTWRNHEGFVYD 91 (243)
T ss_dssp CEEEEEEE--TTEEEEEECCTT-S--CEEEEEETTTCCEEEEEECCT----TCCEEEEEEE-TTEEEEEESSSSEEEEEE
T ss_pred ccccEEEE--CCEEEEECCCCC-C--ceEEEEECCCCCEEEEEeCCC----CcceeEEEEe-CCEEEEEEeeCCEEEEEE
Confidence 46799998 489999765432 2 579999999999987666622 2344567776 367999999999999999
Q ss_pred cCCc-EEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccC-CcCCCCCCeEE
Q 039428 182 VEGQ-LLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRG-GSSLSLGDGLA 258 (335)
Q Consensus 182 ~~g~-~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g-~~~~~~pdGia 258 (335)
++.. .+.. +.-+ ..|..+++|+ +||++| ++++|+.+|+.+.+ ....+.+.. ...+..+..+.
T Consensus 92 ~~tl~~~~t-----i~~~--------~~Gwglt~dg~~L~vSd-gs~~l~~iDp~t~~-~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 92 LATLTPRAR-----FRYP--------GEGWALTSDDSHLYMSD-GTAVIRKLDPDTLQ-QVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp TTTTEEEEE-----EECS--------SCCCEEEECSSCEEEEC-SSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEE
T ss_pred CCcCcEEEE-----EeCC--------CCceEEeeCCCEEEEEC-CCCeEEEEeCCCCe-EEEEEEEccCCcccccceeeE
Confidence 9754 3332 2211 2344444566 999999 58999999999875 556665521 12234455677
Q ss_pred EcCCCcEEEEecCCCeEEEEEcCCCcEEEEEee-eec-------CCCCCcceEEEEe--CCeEEEEec
Q 039428 259 LLSPTKLVVAGNPYPSARLVESSDGWETASVVA-KFN-------GPTHRVATAATVK--DGRVYLSHL 316 (335)
Q Consensus 259 ~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~-~~~-------~p~~~~Pt~va~~--~g~lyV~~~ 316 (335)
.. +|.+|+..+.++.+.+++...+-..+.+.- .+. .+....|.++|++ .++|||+-+
T Consensus 157 ~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 157 WV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred Ee-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 65 789999888789999999877644333321 111 1344578899996 799999753
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-12 Score=111.28 Aligned_cols=215 Identities=12% Similarity=0.160 Sum_probs=140.0
Q ss_pred EcCCCcceeeeEEcCCCCEEEE-EecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 44 YHSPSFLCETAKWDDVGRRFLV-SFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 44 ~~~~~~~pegia~d~~g~~~~~-~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
+++-..-+.|++++++++.+|+ +..+++|+++|. +++ ++. .+...+. ..+.||+++. ++++||+ +-
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~-~g~----v~~---~i~l~g~--~D~EGIa~~~-~g~~~vs--~E 88 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTT-NGD----LIR---TIPLDFV--KDLETIEYIG-DNQFVIS--DE 88 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEET-TCC----EEE---EEECSSC--SSEEEEEECS-TTEEEEE--ET
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeC-CCC----EEE---EEecCCC--CChHHeEEeC-CCEEEEE--EC
Confidence 3444446899999998776665 466789999996 465 233 2222332 3678999995 7888885 32
Q ss_pred CCCccceEEEEECCCCe---EEEEeecCC-CccCCCCCCceeECCCC-cEEEEeCCCC-eEEEEc--cCCcEEEEecCCc
Q 039428 123 LGNKYSALAAYDLSTWK---RLFLTQLSG-KSEEKSTADDIAVDAEG-NAYVTDVVSS-KIWKVG--VEGQLLSIIRSPL 194 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~---~~~~~~~~~-~~~~~~~p~~~~vd~~G-~lyV~d~~~~-~I~~~d--~~g~~~~~~~~~~ 194 (335)
.. +++++|+..... ......+.- .........++++|+++ ++|++..... .||+++ +.+....++..+.
T Consensus 89 ~~---~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~ 165 (255)
T 3qqz_A 89 RD---YAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKA 165 (255)
T ss_dssp TT---TEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHH
T ss_pred CC---CcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchh
Confidence 22 358887754332 122222211 11123456899999986 7999876655 899998 2222222222211
Q ss_pred cccccccccccccCeEEEccC-CeEEEEECCCCEEEEEeCCCCceeEEEEeccCC-----cCCCCCCeEEEcCCCcEEEE
Q 039428 195 FTAKEWYKNVFGLNGIVYHPD-GFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGG-----SSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 195 ~~~~~~~~~~~~p~Gia~~~d-g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~-----~~~~~pdGia~d~~g~l~va 268 (335)
+.. ......+.+|+++|. |+||+....++.|..+|.++. .+....+..+ ..+..|.||++|++|+|||+
T Consensus 166 ~~~---~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv 240 (255)
T 3qqz_A 166 LQR---QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV 240 (255)
T ss_dssp HHH---TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE
T ss_pred hcc---ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE
Confidence 111 012345899999995 599999999999999999987 6667766531 12467999999999999999
Q ss_pred ecCCCeEEEEEc
Q 039428 269 GNPYPSARLVES 280 (335)
Q Consensus 269 ~~~~~~~~v~~~ 280 (335)
+-+ |-.++++.
T Consensus 241 sE~-n~~y~f~~ 251 (255)
T 3qqz_A 241 SEP-NRFYRFTP 251 (255)
T ss_dssp ETT-TEEEEEEC
T ss_pred cCC-ceEEEEEe
Confidence 543 76776653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=4.8e-12 Score=117.64 Aligned_cols=256 Identities=7% Similarity=0.009 Sum_probs=141.8
Q ss_pred hhhhcCCCceeEEE-cCCCcceeeeEEcCCCCEEEEEe----------cCCeEEEEECCCCCCCcceeeeeEEeecCCcC
Q 039428 31 AIAMAKPATHVYQY-HSPSFLCETAKWDDVGRRFLVSF----------LDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV 99 (335)
Q Consensus 31 ~~~~~d~~~~~~~~-~~~~~~pegia~d~~g~~~~~~~----------~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~ 99 (335)
.+.+.|..+.++.- -..+..| +++++|+|+.+|++. .++.|.+||..+.+ ++.++.........
T Consensus 32 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~----~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 32 RVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT----FEKEISLPPKRVQG 106 (361)
T ss_dssp EEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC----EEEEEEECTTBCCB
T ss_pred eEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc----EEEEEEcCcccccc
Confidence 44455554433221 1224568 999999999888883 24579999964333 23321111000112
Q ss_pred CCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEE-eecCCCccCCCCCCc----eeECCCCcE-EEEeCC
Q 039428 100 GNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFL-TQLSGKSEEKSTADD----IAVDAEGNA-YVTDVV 173 (335)
Q Consensus 100 ~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~~~~~p~~----~~vd~~G~l-yV~d~~ 173 (335)
+..|.+|++++++..||+++.+.. +.|.+||.+++++... ++......-...|.+ +++.++|.+ |+....
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~----~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPA----TSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSS----EEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred CCCcceEEECCCCCEEEEECCCCC----CeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence 357999999997778999764211 4699999999887654 433110000012322 445555542 222211
Q ss_pred -------------------------------------CCeEEEEccCCcEEEEecCCccccccccccccccC---eEEEc
Q 039428 174 -------------------------------------SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN---GIVYH 213 (335)
Q Consensus 174 -------------------------------------~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~---Gia~~ 213 (335)
.+.|+.+|..+........-.............|. .++++
T Consensus 183 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 183 DGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp TSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred CCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence 12233333321111000000000000000111244 49999
Q ss_pred cCC-eEEEEEC----------CCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcC
Q 039428 214 PDG-FLIVIHM----------CSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESS 281 (335)
Q Consensus 214 ~dg-~Lyvad~----------~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~ 281 (335)
+|+ ++|++.. .+++|+++|+...+ .+..+.. + . |.+|+++++|+ ||+++. +.+.|++..
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~-~v~~i~~-~----~-p~~ia~spdg~~l~v~n~--~~v~v~D~~ 333 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ-RVARIPG-R----D-ALSMTIDQQRNLMLTLDG--GNVNVYDIS 333 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE-EEEEEEC-T----T-CCEEEEETTTTEEEEECS--SCEEEEECS
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCc-EEEEEec-C----C-eeEEEECCCCCEEEEeCC--CeEEEEECC
Confidence 997 9999875 24589999999875 5555653 2 3 99999999985 777765 889999875
Q ss_pred CCcEEEEEeeeecCCCCCcceEEEEe
Q 039428 282 DGWETASVVAKFNGPTHRVATAATVK 307 (335)
Q Consensus 282 ~~~~~~~~~~~~~~p~~~~Pt~va~~ 307 (335)
.+. .+.+.++. +.+..|..+++.
T Consensus 334 t~~--l~~~~~i~-~~G~~P~~~~~~ 356 (361)
T 2oiz_A 334 QPE--PKLLRTIE-GAAEASLQVQFH 356 (361)
T ss_dssp SSS--CEEEEEET-TSCSSEEEEEEC
T ss_pred CCc--ceeeEEec-cCCCCcEEEEec
Confidence 430 03344442 345668889885
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.53 E-value=8.1e-13 Score=116.39 Aligned_cols=187 Identities=12% Similarity=0.044 Sum_probs=129.5
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEcc
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGV 182 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~ 182 (335)
.+||.++ +++||+++.+... +.|.++|++++++.....+.. ..+..+++++. +++|++++..+.++++|+
T Consensus 45 tqGL~~~--~~~LyestG~~g~---S~v~~vD~~Tgkv~~~~~l~~----~~FgeGit~~g-~~ly~ltw~~~~v~v~D~ 114 (262)
T 3nol_A 45 TEGFFYR--NGYFYESTGLNGR---SSIRKVDIESGKTLQQIELGK----RYFGEGISDWK-DKIVGLTWKNGLGFVWNI 114 (262)
T ss_dssp EEEEEEE--TTEEEEEEEETTE---EEEEEECTTTCCEEEEEECCT----TCCEEEEEEET-TEEEEEESSSSEEEEEET
T ss_pred cceEEEE--CCEEEEECCCCCC---ceEEEEECCCCcEEEEEecCC----ccceeEEEEeC-CEEEEEEeeCCEEEEEEC
Confidence 3899998 5799998765421 579999999999886666521 23445677763 489999999999999999
Q ss_pred CC-cEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccC-CcCCCCCCeEEE
Q 039428 183 EG-QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRG-GSSLSLGDGLAL 259 (335)
Q Consensus 183 ~g-~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g-~~~~~~pdGia~ 259 (335)
+. +.+..+ .- .+.|..+++|| .||++|. +++|+.+|+.+.+ ....+.+.. +..+..+..+.+
T Consensus 115 ~t~~~~~ti-----~~--------~~eG~glt~dg~~L~~SdG-s~~i~~iDp~T~~-v~~~I~V~~~g~~~~~lNELe~ 179 (262)
T 3nol_A 115 RNLRQVRSF-----NY--------DGEGWGLTHNDQYLIMSDG-TPVLRFLDPESLT-PVRTITVTAHGEELPELNELEW 179 (262)
T ss_dssp TTCCEEEEE-----EC--------SSCCCCEEECSSCEEECCS-SSEEEEECTTTCS-EEEEEECEETTEECCCEEEEEE
T ss_pred ccCcEEEEE-----EC--------CCCceEEecCCCEEEEECC-CCeEEEEcCCCCe-EEEEEEeccCCccccccceeEE
Confidence 74 444322 21 12444444566 9999984 8999999999875 566665521 132344556787
Q ss_pred cCCCcEEEEecCCCeEEEEEcCCCcEEEEEeee-e------cCCCCCcceEEEEe--CCeEEEEe
Q 039428 260 LSPTKLVVAGNPYPSARLVESSDGWETASVVAK-F------NGPTHRVATAATVK--DGRVYLSH 315 (335)
Q Consensus 260 d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~-~------~~p~~~~Pt~va~~--~g~lyV~~ 315 (335)
. +|.+|+..+.++.+.+++...+-....+.-. + ..+....|.++|++ .++|||+-
T Consensus 180 ~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 180 V-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp E-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred E-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 6 7899999887788999988766333332211 1 11234578899996 78999975
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=7.7e-12 Score=113.25 Aligned_cols=234 Identities=12% Similarity=0.129 Sum_probs=144.1
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.|.+++|+++|+.+|++ ..++.|..||..++.. ......+ .. ...+.++++++++..+|++.... .
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~----~~~~~~~--~~--~~~~~~~~~s~dg~~l~~~~~~~-----~ 151 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP----VGVVDVV--EG--LDGCHSANISPDNRTLWVPALKQ-----D 151 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE----EEEEEEE--CC--CTTBCCCEECTTSSEEEEEEGGG-----T
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc----ccccccc--cC--CCCceEEEECCCCCEEEEecCCC-----C
Confidence 68999999999977777 5578899998532220 1111121 21 13578999998555788854111 3
Q ss_pred eEEEEECCC-CeEEEEe--ecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCC---cEE--EEecCCcccccc
Q 039428 129 ALAAYDLST-WKRLFLT--QLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEG---QLL--SIIRSPLFTAKE 199 (335)
Q Consensus 129 ~v~~~d~~~-~~~~~~~--~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g---~~~--~~~~~~~~~~~~ 199 (335)
.|.+||.++ +++.... ..... ....|.+++++|+|+ +|+++...+.|..++.+. +.. ..+.. + +.
T Consensus 152 ~v~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~--~--~~ 225 (343)
T 1ri6_A 152 RICLFTVSDDGHLVAQDPAEVTTV--EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM--M--PE 225 (343)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECS--TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC--S--CT
T ss_pred EEEEEEecCCCceeeecccccccC--CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccc--c--Cc
Confidence 599999886 6554221 11111 135788999999996 899988889999998742 221 11110 1 10
Q ss_pred ccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEe-ccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEE
Q 039428 200 WYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIE-LRGGSSLSLGDGLALLSPTK-LVVAGNPYPSAR 276 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~-~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~ 276 (335)
.......+.+++++||| .||++...+++|.+++++...+..+.+. ... . ..|.+++++++|+ ||+++...+.+.
T Consensus 226 ~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~--~~~~~~~~s~dg~~l~~~~~~~~~v~ 302 (343)
T 1ri6_A 226 NFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-E--TQPRGFNVDHSGKYLIAAGQKSHHIS 302 (343)
T ss_dssp TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-S--SSCCCEEECTTSSEEEEECTTTCEEE
T ss_pred cccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC-C--CccceEEECCCCCEEEEecCCCCeEE
Confidence 00112346689999999 8999998999999999873110222221 111 1 2389999999986 777765557777
Q ss_pred EEEcCCCcEEEEEeeeecCCCCCcceEEEEe
Q 039428 277 LVESSDGWETASVVAKFNGPTHRVATAATVK 307 (335)
Q Consensus 277 v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~ 307 (335)
+++.+......+.+..+. ....|.++++.
T Consensus 303 v~~~d~~~g~~~~~~~~~--~g~~p~~i~~~ 331 (343)
T 1ri6_A 303 VYEIVGEQGLLHEKGRYA--VGQGPMWVVVN 331 (343)
T ss_dssp EEEEETTTTEEEEEEEEE--CSSSCCEEEEE
T ss_pred EEEEcCCCceeeEccccc--cCCCCeeEEEE
Confidence 775432210123333443 24568888884
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-12 Score=120.88 Aligned_cols=230 Identities=14% Similarity=0.093 Sum_probs=139.5
Q ss_pred CcceeeeEEcCCCCEEEEEe----------cCCeEEEEECCCCCCCcceeeeeEEeecCC----cCCCCcceEEEeCCCC
Q 039428 48 SFLCETAKWDDVGRRFLVSF----------LDGGVGQVLVPDEYSPGTVLEEVKLVKEDD----VVGNATMGIAVDRPRN 113 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~----------~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~----~~~~~p~Gi~~d~~~g 113 (335)
+..|. ++++|+|+.+|++. .++.|.+||..+.+ ++.+ +..+. ..+..|.++++++++.
T Consensus 78 G~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~----v~~~---I~v~~g~r~~~g~~P~~~a~spDGk 149 (386)
T 3sjl_D 78 GFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL----PTAD---IELPDAPRFLVGTYPWMTSLTPDGK 149 (386)
T ss_dssp CSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC----EEEE---EEETTCCCCCBSCCGGGEEECTTSS
T ss_pred CCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe----EEEE---EECCCccccccCCCCceEEEcCCCC
Confidence 44585 99999999888873 24679999965443 3332 22221 1234799999999777
Q ss_pred eEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCc-----------------------------------
Q 039428 114 RLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADD----------------------------------- 158 (335)
Q Consensus 114 ~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~----------------------------------- 158 (335)
++||++.... +.|.++|.++++++..++.++. ...+|.+
T Consensus 150 ~lyVan~~~~----~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~ 223 (386)
T 3sjl_D 150 TLLFYQFSPA----PAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE 223 (386)
T ss_dssp EEEEEECSSS----CEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred EEEEEEcCCC----CeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccc
Confidence 8999754211 4599999998887644433110 0011111
Q ss_pred -------eeEC-CCCcE-EEEeCCCCeEEEEccCCcEEEEecCC-cccc----ccccccccccCeEEEccCC-eEEEEEC
Q 039428 159 -------IAVD-AEGNA-YVTDVVSSKIWKVGVEGQLLSIIRSP-LFTA----KEWYKNVFGLNGIVYHPDG-FLIVIHM 223 (335)
Q Consensus 159 -------~~vd-~~G~l-yV~d~~~~~I~~~d~~g~~~~~~~~~-~~~~----~~~~~~~~~p~Gia~~~dg-~Lyvad~ 223 (335)
.+++ ++|++ |+++ .++|+.+|..+....+...- .|.. +++.+ .+...+++++++ +|||+..
T Consensus 224 ~~~~~~~~~~~~~dG~~~~vs~--~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~~~lyV~~~ 299 (386)
T 3sjl_D 224 DEFLINHPAYSQKAGRLVWPTY--TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRALDRIYLLVD 299 (386)
T ss_dssp TSCBCSCCEEETTTTEEEEEBT--TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTTTEEEEEEE
T ss_pred cccccccceeEcCCCcEEEEeC--CCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCCCeEEEEec
Confidence 2222 45543 3332 45677776654432221110 0110 11111 123348889988 9999864
Q ss_pred ---------CCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc--EEEEecCCCeEEEEEcCCCcEEEEEeee
Q 039428 224 ---------CSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK--LVVAGNPYPSARLVESSDGWETASVVAK 292 (335)
Q Consensus 224 ---------~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~--l~va~~~~~~~~v~~~~~~~~~~~~~~~ 292 (335)
..++|++||+.+.+ .+..+.+.. .|++|++++||+ ||+++..++.+.|++...+ +.+.+
T Consensus 300 ~~~~~~hk~~~~~V~viD~~t~k-v~~~i~vg~-----~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~----k~~~~ 369 (386)
T 3sjl_D 300 QRDEWRHKTASRFVVVLDAKTGE-RLAKFEMGH-----EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG----EELRS 369 (386)
T ss_dssp ECCTTCTTSCEEEEEEEETTTCC-EEEEEEEEE-----EECEEEECSSSSCEEEEEETTTTEEEEEETTTC----CEEEE
T ss_pred cccccccCCCCCEEEEEECCCCe-EEEEEECCC-----CcceEEECCCCCeEEEEEcCCCCeEEEEECCCC----cEEEE
Confidence 24789999999986 667777632 389999999985 7888877789999998755 34444
Q ss_pred ecCCCCCcceEEEEe
Q 039428 293 FNGPTHRVATAATVK 307 (335)
Q Consensus 293 ~~~p~~~~Pt~va~~ 307 (335)
+..+ ..|..+++.
T Consensus 370 i~~~--~~p~~l~~s 382 (386)
T 3sjl_D 370 VNQL--GHGPQVITT 382 (386)
T ss_dssp ECCC--CSSCCEEEE
T ss_pred ecCC--CCCceeEEC
Confidence 4333 335566653
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-13 Score=124.00 Aligned_cols=229 Identities=12% Similarity=-0.004 Sum_probs=138.5
Q ss_pred CcceeeeEEcCCCCEEEEEe----------cCCeEEEEECCCCCCCcceeeeeEEeecCC----cCCCCcceEEEeCCCC
Q 039428 48 SFLCETAKWDDVGRRFLVSF----------LDGGVGQVLVPDEYSPGTVLEEVKLVKEDD----VVGNATMGIAVDRPRN 113 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~----------~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~----~~~~~p~Gi~~d~~~g 113 (335)
+..| +++++|+|+.+|++. .++.|.+||..+.+ ++. .+..++ ..+..|.+++++|++.
T Consensus 65 G~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~----vv~---~I~v~~~~~~~~g~~P~~ia~SpDGk 136 (368)
T 1mda_H 65 AFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL----PIA---DIELPDAPRFSVGPRVHIIGNCASSA 136 (368)
T ss_dssp CTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC----EEE---EEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred CCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC----EEE---EEECCCccccccCCCcceEEEcCCCC
Confidence 4468 999999999888884 25789999975444 233 222221 1124699999999778
Q ss_pred eEEEEEecCCCCccceEEE--EECCCCeEEEEeecCCC--------------------------------cc--------
Q 039428 114 RLLVAFTDVLGNKYSALAA--YDLSTWKRLFLTQLSGK--------------------------------SE-------- 151 (335)
Q Consensus 114 ~l~v~~~D~~~~~~~~v~~--~d~~~~~~~~~~~~~~~--------------------------------~~-------- 151 (335)
.+||++.... +.|.+ +|+++ ...++.++. ++
T Consensus 137 ~lyVan~~~~----~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~ 209 (368)
T 1mda_H 137 CLLFFLFGSS----AAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA 209 (368)
T ss_dssp CEEEEECSSS----CEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTT
T ss_pred EEEEEccCCC----CeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeee
Confidence 9999764211 34666 77765 111111100 00
Q ss_pred --CCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe---EEEccCC-eEEEEEC--
Q 039428 152 --EKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG---IVYHPDG-FLIVIHM-- 223 (335)
Q Consensus 152 --~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G---ia~~~dg-~Lyvad~-- 223 (335)
-...|. +...++.+|++.. +.|+.+|..+....++..-.+...........|.| +++++|| ++||+..
T Consensus 210 i~vg~~P~--~~~~~~~~~~vs~--~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~ 285 (368)
T 1mda_H 210 QNCSSQAA--QANYPGMLVWAVA--SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH 285 (368)
T ss_dssp SCBCSCCE--EETTTTEEEECBS--SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred eeCCCCcc--ccccCCEEEEEcC--CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccc
Confidence 001111 2222234444444 77888887643222221101110000112234566 8999998 9999865
Q ss_pred -C-----CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEec-CCCeEEEEEcCCCcEEEEEeeeecC
Q 039428 224 -C-----SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGN-PYPSARLVESSDGWETASVVAKFNG 295 (335)
Q Consensus 224 -~-----~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~-~~~~~~v~~~~~~~~~~~~~~~~~~ 295 (335)
. .+.+.+||+...+ .+..+.+.+ .|+||+++++|+ +|++++ +++.+.|++.... +++.++
T Consensus 286 ~~~~~~~~~~~~ViD~~t~~-vv~~i~vg~-----~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~----kvv~~I-- 353 (368)
T 1mda_H 286 SRSCLAAAENTSSVTASVGQ-TSGPISNGH-----DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD----QDQSSV-- 353 (368)
T ss_dssp SSCTTSCEEEEEEEESSSCC-EEECCEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEESSSC----EEEEEC--
T ss_pred cCcccccCCCEEEEECCCCe-EEEEEECCC-----CcceEEECCCCCEEEEEccCCCCeEEEEECCCC----cEEEEE--
Confidence 3 3467799999875 555665432 399999999985 899977 6899999998654 455555
Q ss_pred CCCCcceEEEEe
Q 039428 296 PTHRVATAATVK 307 (335)
Q Consensus 296 p~~~~Pt~va~~ 307 (335)
+.+..|.+++++
T Consensus 354 ~vg~~P~~i~~~ 365 (368)
T 1mda_H 354 ELDKGPESLSVQ 365 (368)
T ss_dssp CCCSCCCEEECC
T ss_pred ECCCCCCEEEee
Confidence 455668888875
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-12 Score=116.88 Aligned_cols=190 Identities=15% Similarity=0.169 Sum_probs=128.5
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecC-CcCCCCcceEEEeCCCCeEEEEEecCC-CCcc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKED-DVVGNATMGIAVDRPRNRLLVAFTDVL-GNKY 127 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~-~~~~~~p~Gi~~d~~~g~l~v~~~D~~-~~~~ 127 (335)
.+.+++++++|++|+.+ ...|+++|..+++ +. .+...+ ....+.++++++|+ +|++|++..+.. ....
T Consensus 91 ~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~-----~~--~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~ 160 (326)
T 2ghs_A 91 MGSALAKISDSKQLIAS--DDGLFLRDTATGV-----LT--LHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGA 160 (326)
T ss_dssp CEEEEEEEETTEEEEEE--TTEEEEEETTTCC-----EE--EEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTC
T ss_pred cceEEEEeCCCeEEEEE--CCCEEEEECCCCc-----EE--EEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCc
Confidence 57899999999887765 4569999965454 22 122211 11124678999997 789999653211 0111
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccC---C-cEE--EEecCCccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVE---G-QLL--SIIRSPLFTAKEW 200 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~---g-~~~--~~~~~~~~~~~~~ 200 (335)
..|+++| +++...... ....|++++++++|+ +|++++..++|++++.+ | +.. +.+. .+..
T Consensus 161 ~~l~~~~--~g~~~~~~~------~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~--~~~~--- 227 (326)
T 2ghs_A 161 GSIYHVA--KGKVTKLFA------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI--DSTG--- 227 (326)
T ss_dssp EEEEEEE--TTEEEEEEE------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE--ECTT---
T ss_pred eEEEEEe--CCcEEEeeC------CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE--ECCC---
Confidence 4699999 465542221 135688999999995 99999999999999974 4 210 1110 0110
Q ss_pred cccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc-CCC-cEEEEec
Q 039428 201 YKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL-SPT-KLVVAGN 270 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d-~~g-~l~va~~ 270 (335)
....|+|++++++|+||++...+++|+++++++. ....+..+. ..|.+++++ +++ .||++..
T Consensus 228 --~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~--~~~~i~~~~----~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 228 --IKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGN--HIARYEVPG----KQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp --SSSEEEEEEECTTSCEEEEEETTTEEEEECTTCC--EEEEEECSC----SBEEEEEEESTTSCEEEEEEB
T ss_pred --CCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCC--EEEEEECCC----CCcEEEEEecCCCCEEEEEec
Confidence 1234899999999999999988899999999655 556666433 248899998 664 6999865
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.2e-12 Score=118.01 Aligned_cols=254 Identities=18% Similarity=0.187 Sum_probs=162.4
Q ss_pred CcceeeeEEc-CCCCEEEEE-ec-C---CeEEEEECCCC-----CCCcceeeeeEEeecCCc---C-CCCcceEEEeCCC
Q 039428 48 SFLCETAKWD-DVGRRFLVS-FL-D---GGVGQVLVPDE-----YSPGTVLEEVKLVKEDDV---V-GNATMGIAVDRPR 112 (335)
Q Consensus 48 ~~~pegia~d-~~g~~~~~~-~~-~---~~I~~~d~~~g-----~~~~~v~~~~~~~~~~~~---~-~~~p~Gi~~d~~~ 112 (335)
...|-|+++| .+|++|+.- .+ . -++.+++.... ..| + + +...|.. . -.++.++.+|+ .
T Consensus 25 n~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p-~-l----l~PYP~w~~~~~lvsV~~v~iD~-~ 97 (381)
T 3q6k_A 25 NMISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHS-P-L----LNKFSGHKTGKELTSIYQPVIDD-C 97 (381)
T ss_dssp GCCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSS-C-C----BEECTTCSSSCSSSCEEEEEECT-T
T ss_pred ccceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCc-c-c----ccCCCCCccccceEEeeEEEEcC-C
Confidence 4478999995 777655444 33 2 36888863210 011 0 1 0122321 1 14689999996 9
Q ss_pred CeEEEEEecCC--C----------CccceEEEEECCCC--eEEEEeecCCC-ccCCCCCCceeEC-C-------CCcEEE
Q 039428 113 NRLLVAFTDVL--G----------NKYSALAAYDLSTW--KRLFLTQLSGK-SEEKSTADDIAVD-A-------EGNAYV 169 (335)
Q Consensus 113 g~l~v~~~D~~--~----------~~~~~v~~~d~~~~--~~~~~~~~~~~-~~~~~~p~~~~vd-~-------~G~lyV 169 (335)
++|||. |++ + ....+|+.||++++ +++..+.++.. ..+.++.++++|| . ++.+|+
T Consensus 98 ~rLWVL--DtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYI 175 (381)
T 3q6k_A 98 RRLWVV--DIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYI 175 (381)
T ss_dssp CEEEEE--ECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEE
T ss_pred CcEEEE--eCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEE
Confidence 999995 544 1 12357999999999 88877777432 1224788999999 2 467999
Q ss_pred EeCCCCeEEEEccCCcEEEEecCCccccccc------cc----cccccCeEEEccC----C-eEEEEECCCCEEEEEeCC
Q 039428 170 TDVVSSKIWKVGVEGQLLSIIRSPLFTAKEW------YK----NVFGLNGIVYHPD----G-FLIVIHMCSGNLFKIDIR 234 (335)
Q Consensus 170 ~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~------~~----~~~~p~Gia~~~d----g-~Lyvad~~~~~v~~~d~~ 234 (335)
+|+..+.|.++|........+.+..|. |+. .+ -..+..||+++|+ + .||+....+.+++++..+
T Consensus 176 tD~~~~gLIVydl~~~~swRv~~~~~~-pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~ 254 (381)
T 3q6k_A 176 TNFLRGALFIYDHKKQDSWNVTHPTFK-AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTK 254 (381)
T ss_dssp EETTTTEEEEEETTTTEEEEEECGGGS-CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHH
T ss_pred EcCCCCcEEEEECCCCcEEEEccCCCc-cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHH
Confidence 999999999999875444333332232 210 00 1247999999997 5 899999999999999843
Q ss_pred ---CCc--eeEEEEeccCCcCCCCCC--eEEEc-CCCcEEEEecCCCeEEEEEcCC-CcE--EEEEeeeecCCCCCcceE
Q 039428 235 ---KEE--EEVKLIELRGGSSLSLGD--GLALL-SPTKLVVAGNPYPSARLVESSD-GWE--TASVVAKFNGPTHRVATA 303 (335)
Q Consensus 235 ---~~~--~~~~~~~~~g~~~~~~pd--Gia~d-~~g~l~va~~~~~~~~v~~~~~-~~~--~~~~~~~~~~p~~~~Pt~ 303 (335)
.+. ..++.+...+ ...+ ++++| .+|+||++.-..++|.+..... .+. ..+++. ..+...+|++
T Consensus 255 ~L~~~~~~~~v~~~G~kg----~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~--~d~~l~~pd~ 328 (381)
T 3q6k_A 255 ELKQKGGKLNPELLGNRG----KYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVY--TSSRFVFGTD 328 (381)
T ss_dssp HHSSTTCCCCCEEEEECC----TTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEE--ECTTCCSEEE
T ss_pred HhhCcchhhceEEeeecC----CCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEE--ECCCccccCe
Confidence 211 1233332111 1235 56776 7899999977667787777654 331 112222 2467889999
Q ss_pred EEEe-CCeEEE-Eecc
Q 039428 304 ATVK-DGRVYL-SHLL 317 (335)
Q Consensus 304 va~~-~g~lyV-~~~~ 317 (335)
+.++ +|+||| ++++
T Consensus 329 ~~i~~~g~Lwv~sn~l 344 (381)
T 3q6k_A 329 ISVDSKGGLWFMSNGF 344 (381)
T ss_dssp EEECTTSCEEEEECSC
T ss_pred EEECCCCeEEEEECcc
Confidence 9996 899999 4443
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-11 Score=111.42 Aligned_cols=211 Identities=13% Similarity=0.153 Sum_probs=128.2
Q ss_pred CcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCc-------CCCCcceEEEeCCCCeEEEEE
Q 039428 48 SFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDV-------VGNATMGIAVDRPRNRLLVAF 119 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~-------~~~~p~Gi~~d~~~g~l~v~~ 119 (335)
...|..+++ +|+.+|++ ..+++|..++........+ +. ......+. ....+++++++|++..||++
T Consensus 99 ~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~-~~--~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~- 172 (361)
T 3scy_A 99 GADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLP-AS--DVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLAD- 172 (361)
T ss_dssp SSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCS-CS--EEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEE-
T ss_pred CCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcc-cc--eeEEccCCCCCccccCCCcceEEEECCCCCEEEEE-
Confidence 456888888 67766666 5678898888532221000 00 01111110 01235889999844458884
Q ss_pred ecCCCCccceEEEEECC--CC----e-EEE-----EeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcE
Q 039428 120 TDVLGNKYSALAAYDLS--TW----K-RLF-----LTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQL 186 (335)
Q Consensus 120 ~D~~~~~~~~v~~~d~~--~~----~-~~~-----~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~ 186 (335)
+... ..|.+|+.+ ++ + +.. ..... ....|+.++++|+|+ +|+++...+.|.+++.++..
T Consensus 173 -~~~~---~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~ 244 (361)
T 3scy_A 173 -DLGT---DQIHKFNINPNANADNKEKFLTKGTPEAFKVA----PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM 244 (361)
T ss_dssp -ETTT---TEEEEEEECTTCCTTTCCCCEEEEEEEEEECC----TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred -eCCC---CEEEEEEEcCCCCcccccceeecccccceecC----CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence 3322 347777654 33 2 211 11221 145788999999996 99999888999999976443
Q ss_pred EEEecCCccccccccccccccCeEEEccCC-eEEEEECC-CCEEEEEeCC--CCc-eeEEEEeccCCcCCCCCCeEEEcC
Q 039428 187 LSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMC-SGNLFKIDIR--KEE-EEVKLIELRGGSSLSLGDGLALLS 261 (335)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~-~~~v~~~d~~--~~~-~~~~~~~~~g~~~~~~pdGia~d~ 261 (335)
...+.. +.. .......|.+++++||| +||+++.. .++|..++++ .++ .....+.. + ..|.++++++
T Consensus 245 ~~~~~~--~~~--~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g----~~~~~~~~sp 315 (361)
T 3scy_A 245 LDEIQT--VAA--DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G----IHPRNFIITP 315 (361)
T ss_dssp EEEEEE--EES--CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S----SCCCEEEECT
T ss_pred eEEeEE--Eec--CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C----CCCceEEECC
Confidence 322211 000 01123457899999999 79999988 8888877765 331 01222332 2 3589999999
Q ss_pred CCc-EEEEecCCCeEEEEEcC
Q 039428 262 PTK-LVVAGNPYPSARLVESS 281 (335)
Q Consensus 262 ~g~-l~va~~~~~~~~v~~~~ 281 (335)
+|+ ||+++..++.+.+++.+
T Consensus 316 dg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 316 NGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp TSCEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEECCCCCEEEEEEE
Confidence 996 88887656778885544
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-11 Score=118.05 Aligned_cols=176 Identities=13% Similarity=0.189 Sum_probs=110.4
Q ss_pred cCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC-----CCCcceEEEeCC---CCeEE
Q 039428 45 HSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV-----GNATMGIAVDRP---RNRLL 116 (335)
Q Consensus 45 ~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~-----~~~p~Gi~~d~~---~g~l~ 116 (335)
...-..|.+++++++|++|++....++|+++++.++. .. .+...+... ...+.||+++|+ ++.||
T Consensus 23 a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~-----~~--~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lY 95 (454)
T 1cru_A 23 LSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGS-----VK--TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY 95 (454)
T ss_dssp ECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----EE--EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred ECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc-----Ee--EEecCCccccccCCCCceeEEEECCCcCcCCEEE
Confidence 3344579999999999988777656789999754444 12 122223211 145779999986 89999
Q ss_pred EEEecCC----CC---ccceEEEEECCCC--eE---E-EEeecCCCccCCCCCCceeECCCCcEEEEeC-----------
Q 039428 117 VAFTDVL----GN---KYSALAAYDLSTW--KR---L-FLTQLSGKSEEKSTADDIAVDAEGNAYVTDV----------- 172 (335)
Q Consensus 117 v~~~D~~----~~---~~~~v~~~d~~~~--~~---~-~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~----------- 172 (335)
++..... +. ..++|++++.+.+ .+ . ....++. ...+.+++|++++||+|||+..
T Consensus 96 v~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~--~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~ 173 (454)
T 1cru_A 96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS--SKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLF 173 (454)
T ss_dssp EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC--CSSCCEEEEEECTTSCEEEEECCTTTTSGGGTT
T ss_pred EEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC--CCCCCCCeEeECCCCeEEEEECCCCCCCccccc
Confidence 9764210 00 0257999886432 22 1 1112321 2257789999999999999832
Q ss_pred ---------------------CCCeEEEEccCCcEEEEecCCccc---ccc-ccccccccCeEEEccCCeEEEEECCCC-
Q 039428 173 ---------------------VSSKIWKVGVEGQLLSIIRSPLFT---AKE-WYKNVFGLNGIVYHPDGFLIVIHMCSG- 226 (335)
Q Consensus 173 ---------------------~~~~I~~~d~~g~~~~~~~~~~~~---~~~-~~~~~~~p~Gia~~~dg~Lyvad~~~~- 226 (335)
..++|+|++++|+... +++ |. .++ ......+|.|++++++|.||+++.+.+
T Consensus 174 ~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~--~Np-f~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d~g~~~ 250 (454)
T 1cru_A 174 LPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPK--DNP-SFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGPNS 250 (454)
T ss_dssp SCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCT--TCC-EETTEECSEEEBCCSEEEEEEECTTSCEEEEEECSSS
T ss_pred cccccccccccccccccCCCCCCeeEEEEeCCCCCCC--CCC-CCCCCcceEEEECCCCcceEEECCCCCEEEEecCCCC
Confidence 1478999999986210 000 00 000 112356799999999999999997543
Q ss_pred --EEEEEe
Q 039428 227 --NLFKID 232 (335)
Q Consensus 227 --~v~~~d 232 (335)
.|.++.
T Consensus 251 ~dein~i~ 258 (454)
T 1cru_A 251 DDEINLIV 258 (454)
T ss_dssp CEEEEECC
T ss_pred CeEEEEec
Confidence 455443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-11 Score=118.28 Aligned_cols=231 Identities=13% Similarity=0.140 Sum_probs=155.4
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEEC--CCCCCCcceeeeeEEeecCCcCCCCcceEEEeC----CCCeEEEEEecCC
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLV--PDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDR----PRNRLLVAFTDVL 123 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~--~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~----~~g~l~v~~~D~~ 123 (335)
.|.+++++|+|+.+|+...+++|..||. .+++ ++. .+. .+..|.++++++ ++..+|+++...
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~----~~~---~i~----~g~~p~~va~sp~~~~dg~~l~v~~~~~- 247 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT----KVA---EIK----IGIEARSVESSKFKGYEDRYTIAGAYWP- 247 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE----EEE---EEE----CCSEEEEEEECCSTTCTTTEEEEEEEES-
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCCCCc----EEE---EEe----cCCCcceEEeCCCcCCCCCEEEEEEccC-
Confidence 3899999999999999866799999996 3332 122 221 134689999998 788899975422
Q ss_pred CCccceEEEEECCCCeEEEEeecCCC---c---cCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCc-EEE--EecCC
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGK---S---EEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQ-LLS--IIRSP 193 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~---~---~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~-~~~--~~~~~ 193 (335)
+.|.+||..+++.+..+...+. . .+...+..++++++| .+|++....+.|+.+|.... ... .+.
T Consensus 248 ----~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-- 321 (543)
T 1nir_A 248 ----PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-- 321 (543)
T ss_dssp ----SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--
T ss_pred ----CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--
Confidence 4699999999887755443210 0 012356789999975 68889999999999997642 111 111
Q ss_pred ccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCC-CeEEE-cCC-CcEEEEe
Q 039428 194 LFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLG-DGLAL-LSP-TKLVVAG 269 (335)
Q Consensus 194 ~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~p-dGia~-d~~-g~l~va~ 269 (335)
....|.+++++||| ++|+++..+++|.++|...++ ....+.. +.. +-| .|..+ +++ |.+|+++
T Consensus 322 ---------~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~-l~~~i~~-g~~--ph~g~g~~~~~p~~g~~~~s~ 388 (543)
T 1nir_A 322 ---------AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR-LSALVDV-GKT--PHPGRGANFVHPKYGPVWSTS 388 (543)
T ss_dssp ---------CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE-EEEEEEC-SSS--BCCTTCEEEEETTTEEEEEEE
T ss_pred ---------cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe-EEEeecc-CCC--CCCCCCcccCCCCCccEEEec
Confidence 12348999999999 689999999999999999874 4455553 211 112 35554 566 7899986
Q ss_pred c-CCCeEEEEEcCCC------cEEEEEeeeecCCCCCcceEEEEe--CCeEEEEe
Q 039428 270 N-PYPSARLVESSDG------WETASVVAKFNGPTHRVATAATVK--DGRVYLSH 315 (335)
Q Consensus 270 ~-~~~~~~v~~~~~~------~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~ 315 (335)
. +.+.+.+++.+.. |+....+. .+. ..+..+++. +.+|||..
T Consensus 389 ~~~d~~V~v~d~~~~~~~~~~~~~v~~l~---~~g-~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 389 HLGDGSISLIGTDPKNHPQYAWKKVAELQ---GQG-GGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEE---CSC-SCCCCEECCTTCCEEEECC
T ss_pred cCCCceEEEEEeCCCCCchhcCeEEEEEE---cCC-CCceEEEcCCCCCcEEEec
Confidence 4 4578999987651 55433332 221 112346663 67888855
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-12 Score=113.67 Aligned_cols=184 Identities=12% Similarity=0.075 Sum_probs=126.9
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEcc
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGV 182 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~ 182 (335)
.+||.++ +++||+++.+. ++|.++|+++++++... +.. ..+..|++++. +++|++++..+.++++|+
T Consensus 57 tqGL~~~--~~~Ly~stG~~-----g~v~~iD~~Tgkv~~~~-l~~----~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~ 123 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTGHQ-----GTLRQLSLESAQPVWME-RLG----NIFAEGLASDG-ERLYQLTWTEGLLFTWSG 123 (268)
T ss_dssp EEEEEEE--TTEEEEEETTT-----TEEEECCSSCSSCSEEE-ECT----TCCEEEEEECS-SCEEEEESSSCEEEEEET
T ss_pred cceEEEE--CCEEEEEcCCC-----CEEEEEECCCCcEEeEE-CCC----CcceeEEEEeC-CEEEEEEccCCEEEEEEC
Confidence 4799998 58999976543 35999999999887555 421 23445688764 479999999999999998
Q ss_pred CCc-EEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccC-CcCCCCCCeEEE
Q 039428 183 EGQ-LLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRG-GSSLSLGDGLAL 259 (335)
Q Consensus 183 ~g~-~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g-~~~~~~pdGia~ 259 (335)
+.. .+..+ .-+ ....|++ +|| +||+++ ++++|+.+|+.+.+ ....+.+.. ...+..+..+.+
T Consensus 124 ~Tl~~~~ti-----~~~------~eGwGLt--~Dg~~L~vSd-Gs~~l~~iDp~T~~-v~~~I~V~~~g~~v~~lNeLe~ 188 (268)
T 3nok_A 124 MPPQRERTT-----RYS------GEGWGLC--YWNGKLVRSD-GGTMLTFHEPDGFA-LVGAVQVKLRGQPVELINELEC 188 (268)
T ss_dssp TTTEEEEEE-----ECS------SCCCCEE--EETTEEEEEC-SSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEEE
T ss_pred CcCcEEEEE-----eCC------CceeEEe--cCCCEEEEEC-CCCEEEEEcCCCCe-EEEEEEeCCCCcccccccccEE
Confidence 753 33322 211 1134555 445 999999 59999999999875 556665422 122345667787
Q ss_pred cCCCcEEEEecCCCeEEEEEcCCCcEEEEEeee-e-------cCCCCCcceEEEEe--CCeEEEEe
Q 039428 260 LSPTKLVVAGNPYPSARLVESSDGWETASVVAK-F-------NGPTHRVATAATVK--DGRVYLSH 315 (335)
Q Consensus 260 d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~-~-------~~p~~~~Pt~va~~--~g~lyV~~ 315 (335)
. +|.+|+..+.++.+.+++...+-..+.+.-. + ..+....|.++|++ .++|||+-
T Consensus 189 ~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 189 A-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp E-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred e-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 6 7899999877788999998776433333211 1 11234568899996 78999974
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-11 Score=120.03 Aligned_cols=200 Identities=14% Similarity=0.095 Sum_probs=138.0
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEE
Q 039428 55 KWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYD 134 (335)
Q Consensus 55 a~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d 134 (335)
++++++.+|++...+++|.+||..+++ ++. .+.. +..++++++++++..||+++.| +.|.+||
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~----~~~---~i~~----g~~~~~v~~spdg~~l~v~~~d------~~V~v~D 206 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKK----IVK---VIDT----GYAVHISRMSASGRYLLVIGRD------ARIDMID 206 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCC----EEE---EEEC----STTEEEEEECTTSCEEEEEETT------SEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCce----EEE---EEec----CcccceEEECCCCCEEEEECCC------CeEEEEE
Confidence 478887666555778999999965454 222 2221 2247899999977788986543 3599999
Q ss_pred C--CCCeEEEEeecCCCccCCCCCCceeECC----CCc-EEEEeCCCCeEEEEccCC-cEEEEecCCcccccc-cccccc
Q 039428 135 L--STWKRLFLTQLSGKSEEKSTADDIAVDA----EGN-AYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKE-WYKNVF 205 (335)
Q Consensus 135 ~--~~~~~~~~~~~~~~~~~~~~p~~~~vd~----~G~-lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~-~~~~~~ 205 (335)
. ++++.+..+.. ...|..++++| ||+ +|+++...+.|..+|.+. +.+..+......... ......
T Consensus 207 ~~~~t~~~~~~i~~------g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~ 280 (543)
T 1nir_A 207 LWAKEPTKVAEIKI------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 280 (543)
T ss_dssp TTSSSCEEEEEEEC------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred CcCCCCcEEEEEec------CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCC
Confidence 9 77776644432 34688999999 985 899988889999999764 444333211000000 000012
Q ss_pred ccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEE--EEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcC
Q 039428 206 GLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVK--LIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESS 281 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~--~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~ 281 (335)
.+.+|++++++ .+|++...+++|+.+|....+ ... .+.. + ..|.+++++++|+ +|+++..++.+.+++..
T Consensus 281 ~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~-~l~~~~i~~-~----~~~~~~~~spdg~~l~va~~~~~~v~v~D~~ 354 (543)
T 1nir_A 281 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDID-NLTVTSIGA-A----PFLHDGGWDSSHRYFMTAANNSNKVAVIDSK 354 (543)
T ss_dssp CEEEEEECSSSSEEEEEETTTTEEEEEECTTSS-SCEEEEEEC-C----SSCCCEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEECCCCeEEEEEecCCC-cceeEEecc-C----cCccCceECCCCCEEEEEecCCCeEEEEECC
Confidence 46789999987 899999999999999998753 222 3432 2 3489999999997 67777767889999887
Q ss_pred CC
Q 039428 282 DG 283 (335)
Q Consensus 282 ~~ 283 (335)
.+
T Consensus 355 tg 356 (543)
T 1nir_A 355 DR 356 (543)
T ss_dssp TT
T ss_pred CC
Confidence 65
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.9e-12 Score=117.87 Aligned_cols=239 Identities=13% Similarity=0.079 Sum_probs=136.0
Q ss_pred CCCCEEEEE-ecC----CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC----CCccc
Q 039428 58 DVGRRFLVS-FLD----GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL----GNKYS 128 (335)
Q Consensus 58 ~~g~~~~~~-~~~----~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~----~~~~~ 128 (335)
++++.+|++ ... ++|.++|..+.+ ++. .+. .+..| ||++++++..+||++.... +...+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~----vv~---~I~----vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~ 149 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGR----ILG---MTD----GGFLP-HPVAAEDGSFFAQASTVFERIARGKRTD 149 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTE----EEE---EEE----ECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCE----EEE---EEE----CCCCC-ceEECCCCCEEEEEeccccccccCCCCC
Confidence 566767776 433 799999965443 333 221 12468 9999998889999763110 00114
Q ss_pred eEEEEECCCCeEEEEeecCCCcc--CCCCCCceeECCCC-cEEEEeCC-CCeEEEEccCCcEE-EEecCCcc--ccccc-
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSE--EKSTADDIAVDAEG-NAYVTDVV-SSKIWKVGVEGQLL-SIIRSPLF--TAKEW- 200 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~--~~~~p~~~~vd~~G-~lyV~d~~-~~~I~~~d~~g~~~-~~~~~~~~--~~~~~- 200 (335)
.|.+||+.++++...+.+.+... ....|.++++++|| .+||++.. .+.|.++|.....+ ..+..+.. ..|..
T Consensus 150 ~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~ 229 (426)
T 3c75_H 150 YVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASP 229 (426)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCC
Confidence 69999999998876665531111 12579999999998 59999875 78999999876433 22221100 00000
Q ss_pred -----------------------------ccccccc--CeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEE---ec
Q 039428 201 -----------------------------YKNVFGL--NGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLI---EL 245 (335)
Q Consensus 201 -----------------------------~~~~~~p--~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~---~~ 245 (335)
......| ..+++++++ .+|+.. ..++|+++|..+. ....+ ..
T Consensus 230 ~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s-~~g~V~ViD~~~~--~~~v~~~~~~ 306 (426)
T 3c75_H 230 TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT-YTGKIFQADLTAE--GATFRAPIEA 306 (426)
T ss_dssp TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB-TTSEEEEEEECSS--CEEECCCEES
T ss_pred cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe-CCCcEEEEeccCC--ceEEeeeeee
Confidence 0000001 123445554 444443 2456777776554 22221 11
Q ss_pred cCCcC--C-CCCCe---EEEcCCC-cEEEEec---------CCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe--
Q 039428 246 RGGSS--L-SLGDG---LALLSPT-KLVVAGN---------PYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK-- 307 (335)
Q Consensus 246 ~g~~~--~-~~pdG---ia~d~~g-~l~va~~---------~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~-- 307 (335)
..... . ..|.| ++++++| ++||++. +++.+.|++.... +++.++. ....|.++++.
T Consensus 307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~----kvv~~I~--vg~~P~gia~spD 380 (426)
T 3c75_H 307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG----ERINKIE--LGHEIDSINVSQD 380 (426)
T ss_dssp SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC----CEEEEEE--EEEEECEEEECCS
T ss_pred ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC----eEEEEEE--CCCCcCeEEEccC
Confidence 00000 0 12555 8999985 7999953 2357999987654 3333432 22347899995
Q ss_pred CC-eEEEEecc
Q 039428 308 DG-RVYLSHLL 317 (335)
Q Consensus 308 ~g-~lyV~~~~ 317 (335)
+. ++|++.+.
T Consensus 381 g~~~lyv~n~~ 391 (426)
T 3c75_H 381 AEPLLYALSAG 391 (426)
T ss_dssp SSCEEEEEETT
T ss_pred CCEEEEEEcCC
Confidence 44 57776643
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-10 Score=108.38 Aligned_cols=195 Identities=16% Similarity=0.218 Sum_probs=140.7
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.+.+++|+++|+.++++ ..++.|+++|..+++ .+. .+... ..+.++++++++..+|++..+ . +
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~----~~~---~~~~~----~~~~~~~~s~dg~~l~~~~~~--~---~ 138 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT----VAG---TVKTG----KSPLGLALSPDGKKLYVTNNG--D---K 138 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE----EEE---EEECS----SSEEEEEECTTSSEEEEEETT--T---T
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCe----EEE---EEeCC----CCcceEEECCCCCEEEEEeCC--C---C
Confidence 68899999999977766 567999999965443 121 22222 357899999855567775321 1 4
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEE-EEecCCccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLL-SIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~-~~~~~~~~~~~~~~~~~~~ 206 (335)
.|..||.++++....... ...+..++++++|+ +|++....+.|+.+|...... ..+. ....
T Consensus 139 ~v~~~d~~~~~~~~~~~~------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-----------~~~~ 201 (391)
T 1l0q_A 139 TVSVINTVTKAVINTVSV------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-----------VEAA 201 (391)
T ss_dssp EEEEEETTTTEEEEEEEC------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----------CSSE
T ss_pred EEEEEECCCCcEEEEEec------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-----------cCCC
Confidence 699999999887644433 24568899999985 788988899999999875443 2221 1124
Q ss_pred cCeEEEccCC-eEEEEEC--CCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcCC
Q 039428 207 LNGIVYHPDG-FLIVIHM--CSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESSD 282 (335)
Q Consensus 207 p~Gia~~~dg-~Lyvad~--~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~~ 282 (335)
+.+++++|+| .||++.. .++.|+.+|+..++ ....+.. + ..|.+++++++|+ +|++....+.+++++...
T Consensus 202 ~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~-~~~~~~~-~----~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-ITARIPV-G----PDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE-EEEEEEC-C----SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred ccceEECCCCCEEEEEecCcCCCcEEEEECCCCe-EEEEEec-C----CCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 7899999999 7888876 68999999998763 4444543 2 2378999999985 778866557888888765
Q ss_pred C
Q 039428 283 G 283 (335)
Q Consensus 283 ~ 283 (335)
+
T Consensus 276 ~ 276 (391)
T 1l0q_A 276 N 276 (391)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.3e-11 Score=111.08 Aligned_cols=258 Identities=10% Similarity=0.078 Sum_probs=162.1
Q ss_pred eEEEcCCCcceeeeEE-----------c--CCCCEEEEE-ecCCeEEEEECCCC-CCCcceeeeeEEeecCCc---CC-C
Q 039428 41 VYQYHSPSFLCETAKW-----------D--DVGRRFLVS-FLDGGVGQVLVPDE-YSPGTVLEEVKLVKEDDV---VG-N 101 (335)
Q Consensus 41 ~~~~~~~~~~pegia~-----------d--~~g~~~~~~-~~~~~I~~~d~~~g-~~~~~v~~~~~~~~~~~~---~~-~ 101 (335)
++.++..+..++...| . .+++.+|+. ..+++|+++|.... +.| ++. +.+...++ .+ .
T Consensus 63 ~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p-~~~---k~ie~~~~~~~~g~s 138 (462)
T 2ece_A 63 KVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREP-KII---KVIEPEEVKKVSGYS 138 (462)
T ss_dssp EEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC-EEE---EEECHHHHHHHHCEE
T ss_pred EEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCc-eee---eeechhhcccccCCC
Confidence 3444444444555566 6 888888888 77899999995311 222 111 23320011 12 3
Q ss_pred CcceEEEeCCCCeEEEEEecC-CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeC-------
Q 039428 102 ATMGIAVDRPRNRLLVAFTDV-LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV------- 172 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~-~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~------- 172 (335)
.|+++.+.| +| +||+..+. .+...+.|..+|.++++++....... .....+.|+.+.|+++ +|++++
T Consensus 139 ~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~--~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~ 214 (462)
T 2ece_A 139 RLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDR--GDQYLAYDFWWNLPNEVLVSSEWAVPNTIE 214 (462)
T ss_dssp EEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBC--TTCCCCCCEEEETTTTEEEECBCCCHHHHT
T ss_pred cccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCC--CCccccceEEECCCCCEEEEccCcCccccc
Confidence 789999997 66 99865432 12223679999999998886554321 1245677899999987 555552
Q ss_pred -----------CCCeEEEEccCCcEE-EEecCCccccccccccccccCeEEE--ccCC-eEEEEEC-----CCCEEEEEe
Q 039428 173 -----------VSSKIWKVGVEGQLL-SIIRSPLFTAKEWYKNVFGLNGIVY--HPDG-FLIVIHM-----CSGNLFKID 232 (335)
Q Consensus 173 -----------~~~~I~~~d~~g~~~-~~~~~~~~~~~~~~~~~~~p~Gia~--~~dg-~Lyvad~-----~~~~v~~~d 232 (335)
..++|.++|.+.... ..+.-+ .....|.+|.+ +|+| ++||+.. .+++|+++.
T Consensus 215 ~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg--------~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~ 286 (462)
T 2ece_A 215 DGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG--------EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWF 286 (462)
T ss_dssp TCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC--------TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEE
T ss_pred cccchhhhhhccCCEEEEEECCCCcEeeEEecC--------CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEE
Confidence 479999999875432 222110 01245888877 9999 9999998 899998887
Q ss_pred CCCCc-eeEEEEeccCCc---C-----------CCCCCeEEEcCCC-cEEEEecCCCeEEEEEcCCCcEEEEEeeeecCC
Q 039428 233 IRKEE-EEVKLIELRGGS---S-----------LSLGDGLALLSPT-KLVVAGNPYPSARLVESSDGWETASVVAKFNGP 296 (335)
Q Consensus 233 ~~~~~-~~~~~~~~~g~~---~-----------~~~pdGia~d~~g-~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p 296 (335)
.+.++ ...+.+++.... . -..|.+|.+.+|| .|||++.+.+.+++++..+..+ .++.+.+...
T Consensus 287 ~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~-~~lv~~I~tG 365 (462)
T 2ece_A 287 YEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFK-PVLTGKVKLG 365 (462)
T ss_dssp EETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTS-CEEEEEEECB
T ss_pred ecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCC-cEEEEEEEeC
Confidence 76541 122333322110 0 1458999999998 5999999889999998653311 2233333211
Q ss_pred ---------CCC----cceEEEEe--CCeEEEEe
Q 039428 297 ---------THR----VATAATVK--DGRVYLSH 315 (335)
Q Consensus 297 ---------~~~----~Pt~va~~--~g~lyV~~ 315 (335)
.+. .|..+++. +.+|||++
T Consensus 366 G~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 366 GIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 011 47789994 77899977
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-11 Score=107.01 Aligned_cols=203 Identities=12% Similarity=0.170 Sum_probs=129.8
Q ss_pred CCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCC
Q 039428 96 DDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSS 175 (335)
Q Consensus 96 ~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~ 175 (335)
+++. ..+.||++++++++||++. |.. ..|+++|++ +++.....+.+ ..-+.|++++++|.+||++...+
T Consensus 23 ~g~~-~~lSGla~~~~~~~L~aV~-d~~----~~I~~ld~~-g~v~~~i~l~g----~~D~EGIa~~~~g~~~vs~E~~~ 91 (255)
T 3qqz_A 23 AGIT-NNISSLTWSAQSNTLFSTI-NKP----AAIVEMTTN-GDLIRTIPLDF----VKDLETIEYIGDNQFVISDERDY 91 (255)
T ss_dssp TTCC-SCEEEEEEETTTTEEEEEE-ETT----EEEEEEETT-CCEEEEEECSS----CSSEEEEEECSTTEEEEEETTTT
T ss_pred CCcc-cCcceeEEeCCCCEEEEEE-CCC----CeEEEEeCC-CCEEEEEecCC----CCChHHeEEeCCCEEEEEECCCC
Confidence 4443 3589999998788999874 332 579999998 66765555522 46688999999999999998889
Q ss_pred eEEEEccC--CcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCC-EEEEEe--CCCCceeEEEEec---c
Q 039428 176 KIWKVGVE--GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSG-NLFKID--IRKEEEEVKLIEL---R 246 (335)
Q Consensus 176 ~I~~~d~~--g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~-~v~~~d--~~~~~~~~~~~~~---~ 246 (335)
++++++.+ +.. ..+....+.. ...+.-.+..|||+++++ +||++..... .|++++ +.+. ....+.. .
T Consensus 92 ~l~~~~v~~~~~i-~~~~~~~~~~-~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~--~l~i~~~~~~~ 167 (255)
T 3qqz_A 92 AIYVISLTPNSEV-KILKKIKIPL-QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN--ELHISKDKALQ 167 (255)
T ss_dssp EEEEEEECTTCCE-EEEEEEECCC-SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS--CCEEEECHHHH
T ss_pred cEEEEEcCCCCee-eeeeeecccc-ccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC--ceeeecchhhc
Confidence 99988644 431 1111111110 001123457999999988 9998876665 899998 2222 2333321 1
Q ss_pred CCcCCCCCCeEEEcCC-CcEEEEecCCCeEEEEEcCCCcEEEEEee---eecC--CCCCcceEEEEe-CCeEEEEe
Q 039428 247 GGSSLSLGDGLALLSP-TKLVVAGNPYPSARLVESSDGWETASVVA---KFNG--PTHRVATAATVK-DGRVYLSH 315 (335)
Q Consensus 247 g~~~~~~pdGia~d~~-g~l~va~~~~~~~~v~~~~~~~~~~~~~~---~~~~--p~~~~Pt~va~~-~g~lyV~~ 315 (335)
+...+..+.++++|+. |++|+....++.+.+++. .++...... ...+ ....+|.+||++ +|+|||++
T Consensus 168 ~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~--~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs 241 (255)
T 3qqz_A 168 RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTL--VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS 241 (255)
T ss_dssp HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECT--TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcC--CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence 1122456899999987 689999775565555543 322211111 1110 135689999997 89999953
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-10 Score=105.54 Aligned_cols=208 Identities=12% Similarity=0.014 Sum_probs=135.1
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCC--cCCCCcceEEEeCCCCeEEEEEecC----
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDD--VVGNATMGIAVDRPRNRLLVAFTDV---- 122 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~--~~~~~p~Gi~~d~~~g~l~v~~~D~---- 122 (335)
.|.+++++++|+.+|++ ..++.|+++|..+++ ++. .+..+. ..+..+.++++++++..||++....
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~----~~~---~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 107 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE----TLG---RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL 107 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCC----EEE---EEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECS
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCC----eEe---eEEcCCcccccccccceEECCCCCEEEEEeccccccc
Confidence 48999999999877666 667899999965554 122 222221 0112578999998555888864110
Q ss_pred CCC--ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCc-EEEEecCCcc-c-
Q 039428 123 LGN--KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQ-LLSIIRSPLF-T- 196 (335)
Q Consensus 123 ~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~-~- 196 (335)
... ..+.|.+||.++++....... ...|++++++|+|+ +|++ ++.|+++|.++. ....+..... .
T Consensus 108 ~~~~~~~~~i~v~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~ 178 (337)
T 1pby_B 108 THFEVQPTRVALYDAETLSRRKAFEA------PRQITMLAWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSWEAE 178 (337)
T ss_dssp SCEEECCCEEEEEETTTTEEEEEEEC------CSSCCCEEECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTTTTT
T ss_pred ccccccCceEEEEECCCCcEEEEEeC------CCCcceeEECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccccCCC
Confidence 000 014699999998877644433 24578999999996 8888 478999998744 3333321110 0
Q ss_pred ---ccc---------------------------------------------------ccccccccCeEEEccCC-eEEEE
Q 039428 197 ---AKE---------------------------------------------------WYKNVFGLNGIVYHPDG-FLIVI 221 (335)
Q Consensus 197 ---~~~---------------------------------------------------~~~~~~~p~Gia~~~dg-~Lyva 221 (335)
.|. ..+....+.+++++||| .||++
T Consensus 179 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 258 (337)
T 1pby_B 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA 258 (337)
T ss_dssp TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe
Confidence 000 00011246679999999 78888
Q ss_pred ECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcCCC
Q 039428 222 HMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 222 d~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~~~ 283 (335)
+++|+++|++..+ ....+.. + ..|.+++++++|+ +|+++. .+.+.+++...+
T Consensus 259 ---~~~v~~~d~~~~~-~~~~~~~-~----~~~~~~~~s~dg~~l~~~~~-~~~i~v~d~~~~ 311 (337)
T 1pby_B 259 ---YNVLESFDLEKNA-SIKRVPL-P----HSYYSVNVSTDGSTVWLGGA-LGDLAAYDAETL 311 (337)
T ss_dssp ---ESEEEEEETTTTE-EEEEEEC-S----SCCCEEEECTTSCEEEEESB-SSEEEEEETTTC
T ss_pred ---CCeEEEEECCCCc-CcceecC-C----CceeeEEECCCCCEEEEEcC-CCcEEEEECcCC
Confidence 5899999998864 4445543 2 2489999999986 777643 477888887654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-10 Score=108.98 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=149.6
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
...+++|++++++|+++..++.|..||..+++ .+. .+... +..+.++++++++..+|++... . ..
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~----~~~---~~~~~---~~~~~~~~~~~~~~~l~~~~~~--~---~~ 235 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLKTLA----YKA---TVDLT---GKWSKILLYDPIRDLVYCSNWI--S---ED 235 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC----EEE---EEECS---SSSEEEEEEETTTTEEEEEETT--T---TE
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECCCce----EEE---EEcCC---CCCeeEEEEcCCCCEEEEEecC--C---Cc
Confidence 45678999998888777888999999965444 122 22211 2367899999866667775321 1 36
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeC-------CCCeEEEEccCCcE-EEEecCCccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV-------VSSKIWKVGVEGQL-LSIIRSPLFTAKEW 200 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~-------~~~~I~~~d~~g~~-~~~~~~~~~~~~~~ 200 (335)
|.+||+++++....... ...+.+++++++|+ +|++.. ..+.|+.+|..+.. ...+.
T Consensus 236 i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--------- 300 (433)
T 3bws_A 236 ISVIDRKTKLEIRKTDK------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--------- 300 (433)
T ss_dssp EEEEETTTTEEEEECCC------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE---------
T ss_pred EEEEECCCCcEEEEecC------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc---------
Confidence 99999998877644322 23588999999985 677654 35789999986443 33221
Q ss_pred cccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCC------
Q 039428 201 YKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPY------ 272 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~------ 272 (335)
....+.+++++|+| .+|++...+++|..+|+++.+ ....+.. + ..|.++++.++|+ +|+++...
T Consensus 301 --~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~-~~~~~~~-~----~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 372 (433)
T 3bws_A 301 --PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK-VQKSIPV-F----DKPNTIALSPDGKYLYVSCRGPNHPTEG 372 (433)
T ss_dssp --EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE-EEEEEEC-S----SSEEEEEECTTSSEEEEEECCCCCTTTC
T ss_pred --CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc-EEEEecC-C----CCCCeEEEcCCCCEEEEEecCCCccccc
Confidence 11247899999999 899999999999999998763 4444442 2 3478999999986 77775432
Q ss_pred --------CeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe--CCeEEEEe
Q 039428 273 --------PSARLVESSDGWETASVVAKFNGPTHRVATAATVK--DGRVYLSH 315 (335)
Q Consensus 273 --------~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~ 315 (335)
+.+++++...+ +....+.. ...|+++++. +..||++.
T Consensus 373 ~~~~g~~dg~v~~~d~~~~----~~~~~~~~--~~~~~~~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 373 YLKKGLVLGKVYVIDTTTD----TVKEFWEA--GNQPTGLDVSPDNRYLVISD 419 (433)
T ss_dssp TTSCCSSCCEEEEEETTTT----EEEEEEEC--SSSEEEEEECTTSCEEEEEE
T ss_pred cccccccceEEEEEECCCC----cEEEEecC--CCCCceEEEcCCCCEEEEEE
Confidence 26888876554 22333322 3357788885 44566654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-10 Score=112.88 Aligned_cols=238 Identities=13% Similarity=0.118 Sum_probs=155.0
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECC--CCCCCcceeeeeEEeecCCcCCCCcceEEEe----CCCCeEEEEEec
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVP--DEYSPGTVLEEVKLVKEDDVVGNATMGIAVD----RPRNRLLVAFTD 121 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~--~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d----~~~g~l~v~~~D 121 (335)
+..|++++++++|+.+|++..++.|.+||.. +.+ ++. .+ + .+..|.+++++ |++..+||++..
T Consensus 196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~----~v~---~i--~--~G~~P~~ia~s~~~~pDGk~l~v~n~~ 264 (567)
T 1qks_A 196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT----TVA---EI--K--IGSEARSIETSKMEGWEDKYAIAGAYW 264 (567)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC----EEE---EE--E--CCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc----EeE---EE--e--cCCCCceeEEccccCCCCCEEEEEEcc
Confidence 4578999999999998988778899999963 222 222 12 1 13468999999 566789997654
Q ss_pred CCCCccceEEEEECCCCeEEEEeecCCCc-c-----CCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCc-EEEEecCC
Q 039428 122 VLGNKYSALAAYDLSTWKRLFLTQLSGKS-E-----EKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQ-LLSIIRSP 193 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~-----~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~-~~~~~~~~ 193 (335)
. +.|.++|..+.+++..+...+.. . +...+..+...+++ .+|++....+.|+.+|.... ...+.
T Consensus 265 ~-----~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~--- 336 (567)
T 1qks_A 265 P-----PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT--- 336 (567)
T ss_dssp T-----TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE---
T ss_pred C-----CeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceee---
Confidence 3 46999999998877555442110 0 01244567777775 57777788899999997642 11110
Q ss_pred ccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCC-CeEEE-cCC-CcEEEEe
Q 039428 194 LFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLG-DGLAL-LSP-TKLVVAG 269 (335)
Q Consensus 194 ~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~p-dGia~-d~~-g~l~va~ 269 (335)
.. +....++++.++||| ++|+++..+++|.++|...++ ....+++.+.. .-| .|..+ +++ |.+|++.
T Consensus 337 ~i------~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k-l~~~i~vgg~~--Phpg~g~~~~~p~~g~v~~t~ 407 (567)
T 1qks_A 337 EI------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK-LVAIEDTGGQT--PHPGRGANFVHPTFGPVWATS 407 (567)
T ss_dssp EE------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE-EEEEEECSSSS--BCCTTCEEEEETTTEEEEEEE
T ss_pred ee------eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc-EEEEEeccCcC--CCCccceeeECCCCCcEEEeC
Confidence 00 012347899999999 899999999999999999874 44556541312 223 47664 676 6799885
Q ss_pred c-CCCeEEEEEcCCC------cEEEEEeeeecCCCCCcceEEEEe--CCeEEEEecc
Q 039428 270 N-PYPSARLVESSDG------WETASVVAKFNGPTHRVATAATVK--DGRVYLSHLL 317 (335)
Q Consensus 270 ~-~~~~~~v~~~~~~------~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~~~ 317 (335)
. +++.+.|++.+.+ |+..+.+... ++ .+..+... +.+|||+...
T Consensus 408 ~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-g~---g~~~i~~~p~~~~l~v~~~~ 460 (567)
T 1qks_A 408 HMGDDSVALIGTDPEGHPDNAWKILDSFPAL-GG---GSLFIKTHPNSQYLYVDATL 460 (567)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECS-CS---CCCCEECCTTCSEEEEECTT
T ss_pred CCCCCeEEEecCCCCCCccccCEEEEEEecC-CC---CCEEEEeCCCCCeEEEecCC
Confidence 3 5578999987642 6554433321 11 11224443 5679986644
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=6.5e-11 Score=109.68 Aligned_cols=225 Identities=12% Similarity=0.088 Sum_probs=132.2
Q ss_pred eeeeEEcCCCCE-EEEE-e-------------cCCeEEEEECC-CCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCe
Q 039428 51 CETAKWDDVGRR-FLVS-F-------------LDGGVGQVLVP-DEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNR 114 (335)
Q Consensus 51 pegia~d~~g~~-~~~~-~-------------~~~~I~~~d~~-~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~ 114 (335)
|.+++++|+|+. ++.. . .++++..++.. +++ +.......... .+..+++++++|++..
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~----~~~~~~~~~~~--~~~~~~~~~~spdG~~ 158 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK----LEKNVQNYEYQ--ENTGIHGMVFDPTETY 158 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC----EEEEEEEEECC--TTCCEEEEEECTTSSE
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc----CcceEeeEEeC--CCCcceEEEECCCCCE
Confidence 778999999984 3322 2 46777766642 343 11111111111 1246899999985456
Q ss_pred EEEEEecCCCCccceEEEEECC-CCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccC---CcEEE-
Q 039428 115 LLVAFTDVLGNKYSALAAYDLS-TWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVE---GQLLS- 188 (335)
Q Consensus 115 l~v~~~D~~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~---g~~~~- 188 (335)
||++ |... +.|.+||.+ ++++.....+..+. ....|.+++++|||+ +|+++...+.|.+++.+ |+...
T Consensus 159 l~~~--~~~~---~~v~~~~~~~~g~~~~~~~~~~~~-~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~ 232 (365)
T 1jof_A 159 LYSA--DLTA---NKLWTHRKLASGEVELVGSVDAPD-PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYT 232 (365)
T ss_dssp EEEE--ETTT---TEEEEEEECTTSCEEEEEEEECSS-TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred EEEE--cCCC---CEEEEEEECCCCCEEEeeeEecCC-CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEc
Confidence 8774 4322 359999987 67654222221111 135689999999994 89998877877776532 44321
Q ss_pred --EecCCccccccccc------cccccCeEE-EccCC-eEEEEECCCC-----EEEEEeCCCCceeEEE----EeccCCc
Q 039428 189 --IIRSPLFTAKEWYK------NVFGLNGIV-YHPDG-FLIVIHMCSG-----NLFKIDIRKEEEEVKL----IELRGGS 249 (335)
Q Consensus 189 --~~~~~~~~~~~~~~------~~~~p~Gia-~~~dg-~Lyvad~~~~-----~v~~~d~~~~~~~~~~----~~~~g~~ 249 (335)
.+. .+.. +... ....+.+++ ++||| +||+++...+ +|..++++..+ .... +...+
T Consensus 233 ~~~~~--~~~~-~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g-~~~~~~~~~~~~~-- 306 (365)
T 1jof_A 233 HHSFP--LIPP-GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG-SIEKQLFLSPTPT-- 306 (365)
T ss_dssp EEEEE--SSCT-TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS-CEEEEEEEEECSS--
T ss_pred cceEE--cCCC-CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC-CEEEeeeeeecCC--
Confidence 111 1100 0000 011488999 99999 8999987665 88888775221 3332 22222
Q ss_pred CCCCCCeEEEcC---CC-cEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCC
Q 039428 250 SLSLGDGLALLS---PT-KLVVAGNPYPSARLVESSDGWETASVVAKFNGPT 297 (335)
Q Consensus 250 ~~~~pdGia~d~---~g-~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~ 297 (335)
..|.+++++| +| .||+++..++.+.+++.+.+ ..+....+..|.
T Consensus 307 --~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~--~l~~~~~~~~~~ 354 (365)
T 1jof_A 307 --SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE--FLHRVARVRIPE 354 (365)
T ss_dssp --CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT--EEEEEEEEECCS
T ss_pred --CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh--hCceeeEEEcCC
Confidence 3489999999 67 57888765578888876554 223334454443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.8e-11 Score=109.03 Aligned_cols=204 Identities=11% Similarity=0.126 Sum_probs=128.8
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCC---ccCCCCCCceeE---CCCCcEEE-EeC--
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGK---SEEKSTADDIAV---DAEGNAYV-TDV-- 172 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~p~~~~v---d~~G~lyV-~d~-- 172 (335)
.|.+++.|++++++|+ ++... ..|.++|+.++..... .++.. +.+...+.|+.+ |++|++|| ++.
T Consensus 14 yPE~~~wd~~~g~~~v--s~l~~---g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQ--SNLYK---GRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp CCSCEEEETTTTEEEE--EETTT---TEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred CCcCccCcCCCCEEEE--EeccC---CEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 5789999988899999 55443 4699999986654422 33221 222456789999 79999998 452
Q ss_pred ----------CCCeEEEEccC----CcEEEEecCCccccc--cccc-cccccCeEEEccCCeEEEEECCC-CEEEEEeCC
Q 039428 173 ----------VSSKIWKVGVE----GQLLSIIRSPLFTAK--EWYK-NVFGLNGIVYHPDGFLIVIHMCS-GNLFKIDIR 234 (335)
Q Consensus 173 ----------~~~~I~~~d~~----g~~~~~~~~~~~~~~--~~~~-~~~~p~Gia~~~dg~Lyvad~~~-~~v~~~d~~ 234 (335)
....|.++|++ ++....+.-...... ...+ ...++|.|++|++|+.||+++.. +.|+|++++
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 35789999988 555443221000000 0000 12359999999999999999999 999999999
Q ss_pred CCceeEEEEeccC--CcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcCCCcEEEEEeeee-c-CCCCCcceEE-EEe-
Q 039428 235 KEEEEVKLIELRG--GSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESSDGWETASVVAKF-N-GPTHRVATAA-TVK- 307 (335)
Q Consensus 235 ~~~~~~~~~~~~g--~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~~~~~~~~~~~~~-~-~p~~~~Pt~v-a~~- 307 (335)
+. .+..+.... .....++.||++.++|+ |++++. .+++..++...-. ..++.... . ...+..|.++ +..
T Consensus 168 G~--~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv-~~~v~~~~~G~~~~~~~~dgilp~~~ 243 (334)
T 2p9w_A 168 GK--TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPY-AWPEPVKINGDFGTLSGTEKIVTVPV 243 (334)
T ss_dssp SC--CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSS-CCCEECEESSCCCCCTTEEEEEEEEE
T ss_pred CC--EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCc-ceeecccccCCcccccCccccccccc
Confidence 87 444443211 11234688999999996 555555 5778877765211 10111110 0 0235567785 554
Q ss_pred CCeE-EEEe
Q 039428 308 DGRV-YLSH 315 (335)
Q Consensus 308 ~g~l-yV~~ 315 (335)
+|++ +|++
T Consensus 244 ~G~vllV~~ 252 (334)
T 2p9w_A 244 GNESVLVGA 252 (334)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEEEc
Confidence 7776 7765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-10 Score=107.50 Aligned_cols=213 Identities=12% Similarity=0.079 Sum_probs=128.0
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECC-CCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCe-EEEEEec-----
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVP-DEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNR-LLVAFTD----- 121 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~-~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~-l~v~~~D----- 121 (335)
..|..++++++|+.+|+...+ .|..|+.. +++ +.. ....+. +..|..++++| +|+ +|+..++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~-----~~~--~~~~~~--~g~~~~~~~sp-dg~~l~~~~~~~~~~~ 108 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTE-----IVH--EASHPI--GGHPRANDADT-NTRAIFLLAAKQPPYA 108 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTE-----EEE--EEEEEC--CSSGGGGCTTS-CCEEEEEEECSSTTCC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCC-----EEE--eeEeec--CCCCccEEECC-CCCEEEEEEecCCcce
Confidence 368899999999977777444 88888743 343 111 222111 12467889997 565 3543343
Q ss_pred -CC-----CCccceEEEEECC-CCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccC--CcEEEEec
Q 039428 122 -VL-----GNKYSALAAYDLS-TWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVE--GQLLSIIR 191 (335)
Q Consensus 122 -~~-----~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~--g~~~~~~~ 191 (335)
.. .+ +.+..|+.+ .+++........ .+....|++++++|||+ +|+++...++|++++.+ |+... +.
T Consensus 109 ~~~~~~~~~~--g~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~-~~ 184 (365)
T 1jof_A 109 VYANPFYKFA--GYGNVFSVSETGKLEKNVQNYE-YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL-VG 184 (365)
T ss_dssp EEEEEESSSC--CEEEEEEECTTCCEEEEEEEEE-CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE-EE
T ss_pred eccceeecCC--ceEEEEccCCCCcCcceEeeEE-eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE-ee
Confidence 10 11 347777765 354432221100 01145789999999996 89999888899999976 44322 11
Q ss_pred CCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCC--CCcee--EEEEec-cCCc-CCC-------CCCeE
Q 039428 192 SPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIR--KEEEE--VKLIEL-RGGS-SLS-------LGDGL 257 (335)
Q Consensus 192 ~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~--~~~~~--~~~~~~-~g~~-~~~-------~pdGi 257 (335)
.+..+ ....+|.+++++||| +||+++..+++|..++.+ .++.. .+.+.. +.+. ... .|.++
T Consensus 185 --~~~~~---~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 259 (365)
T 1jof_A 185 --SVDAP---DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV 259 (365)
T ss_dssp --EEECS---STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred --eEecC---CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccE
Confidence 11100 013459999999999 899999888888777654 33201 123332 1110 001 37789
Q ss_pred E-EcCCCc-EEEEecCCC-----eEEEEEcC
Q 039428 258 A-LLSPTK-LVVAGNPYP-----SARLVESS 281 (335)
Q Consensus 258 a-~d~~g~-l~va~~~~~-----~~~v~~~~ 281 (335)
+ ++++|+ ||+++.+.+ .+.+++.+
T Consensus 260 ~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 260 CALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp EEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred EEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 9 999995 788865434 78888765
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-11 Score=111.75 Aligned_cols=223 Identities=9% Similarity=-0.025 Sum_probs=128.3
Q ss_pred ceeeeEEcCC---CCEEEEE-ec-------CCeEEEEECCCCCCCcceeeeeEEee-cCC--cCCCCcceEEEeCCCCeE
Q 039428 50 LCETAKWDDV---GRRFLVS-FL-------DGGVGQVLVPDEYSPGTVLEEVKLVK-EDD--VVGNATMGIAVDRPRNRL 115 (335)
Q Consensus 50 ~pegia~d~~---g~~~~~~-~~-------~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~--~~~~~p~Gi~~d~~~g~l 115 (335)
.|.+++++|+ ++.+|++ .. ..+|.+++...+.. ++.....++. .+. ...+.+.+|++++ +|.|
T Consensus 67 g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~--~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~L 143 (353)
T 2g8s_A 67 GLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLS--KVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYL 143 (353)
T ss_dssp SEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSS--BEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEE
T ss_pred CceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCC--CCCceEEEEEECCCCCCCcccCccEEECC-CCcE
Confidence 4679999995 4444454 33 35799887432210 0111112222 232 1124578999997 7899
Q ss_pred EEEEecCCC--------CccceEEEEECCCCeEEEEeec--------CCCccCCCCCCceeECC-CCcEEEEeCCC---C
Q 039428 116 LVAFTDVLG--------NKYSALAAYDLSTWKRLFLTQL--------SGKSEEKSTADDIAVDA-EGNAYVTDVVS---S 175 (335)
Q Consensus 116 ~v~~~D~~~--------~~~~~v~~~d~~~~~~~~~~~~--------~~~~~~~~~p~~~~vd~-~G~lyV~d~~~---~ 175 (335)
|++..|... ....+|+++|+++.-.. .-++ ..-..++..|+++++|+ +|++|++|... .
T Consensus 144 yv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~-~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~d 222 (353)
T 2g8s_A 144 FIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD-DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGD 222 (353)
T ss_dssp EEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT-TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCE
T ss_pred EEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC-CCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCc
Confidence 998765432 11247999998753100 0000 00001256799999999 79999999764 3
Q ss_pred eEEEEccCCcEEE---Eec---------------CCccccccc-cccccccCeEEEcc-------CCeEEEEECCCCEEE
Q 039428 176 KIWKVGVEGQLLS---IIR---------------SPLFTAKEW-YKNVFGLNGIVYHP-------DGFLIVIHMCSGNLF 229 (335)
Q Consensus 176 ~I~~~d~~g~~~~---~~~---------------~~~~~~~~~-~~~~~~p~Gia~~~-------dg~Lyvad~~~~~v~ 229 (335)
.|.++.+.+..-. ..+ .+.+..|.. -.....|.|+++.. +|.+||++...++|+
T Consensus 223 ei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~ 302 (353)
T 2g8s_A 223 EINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVI 302 (353)
T ss_dssp EEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEE
T ss_pred EEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEE
Confidence 6777765443200 000 000111110 01124689999974 589999999999999
Q ss_pred EEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE-ecCCCeEEEE
Q 039428 230 KIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA-GNPYPSARLV 278 (335)
Q Consensus 230 ~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va-~~~~~~~~v~ 278 (335)
++++++++ ......+.... ...|.+|+++++|.|||+ +...++++.+
T Consensus 303 ~~~~~~~~-~~~~~~~~~~~-~~rp~~v~~~pdG~lyv~td~~~g~I~ri 350 (353)
T 2g8s_A 303 VMSVNGDK-VTEDGRILTDR-GQRIRDVRTGPDGYLYVLTDESSGELLKV 350 (353)
T ss_dssp EEEEETTE-EEEEEEESGGG-CCCEEEEEECTTSCEEEEECSTTEEEEEE
T ss_pred EEEeCCCe-EeeeEEcccCC-CCceeEEEECCCCcEEEEEeCCCCEEEEE
Confidence 99998652 22221111111 346999999999999997 4433444433
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.4e-10 Score=105.57 Aligned_cols=203 Identities=17% Similarity=0.194 Sum_probs=140.1
Q ss_pred cCCCcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC
Q 039428 45 HSPSFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 45 ~~~~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
......+.+++|+++++.+|++ ..++.|..||..+++ .+. .+ +. ...+.++++++++..+|++..+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~----~~~---~~--~~--~~~~~~~~~~~~g~~l~~~~~~~~ 276 (433)
T 3bws_A 208 DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL----EIR---KT--DK--IGLPRGLLLSKDGKELYIAQFSAS 276 (433)
T ss_dssp ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE----EEE---EC--CC--CSEEEEEEECTTSSEEEEEEEESC
T ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc----EEE---Ee--cC--CCCceEEEEcCCCCEEEEEECCCC
Confidence 3345578999999999988777 568999999965443 111 22 21 135789999985557777543221
Q ss_pred CC--ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCcE-EEEecCCcccccc
Q 039428 124 GN--KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAKE 199 (335)
Q Consensus 124 ~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~~ 199 (335)
.- ....|..||+++++....... ...+..++++++| .+|++....+.|..+|.++.. ...+.
T Consensus 277 ~~~~~dg~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-------- 342 (433)
T 3bws_A 277 NQESGGGRLGIYSMDKEKLIDTIGP------PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-------- 342 (433)
T ss_dssp TTCSCCEEEEEEETTTTEEEEEEEE------EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--------
T ss_pred ccccCCCeEEEEECCCCcEEeeccC------CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--------
Confidence 00 014699999998877644322 2356789999998 599999999999999987543 33221
Q ss_pred ccccccccCeEEEccCC-eEEEEECCC--------------CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc
Q 039428 200 WYKNVFGLNGIVYHPDG-FLIVIHMCS--------------GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK 264 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg-~Lyvad~~~--------------~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~ 264 (335)
....+.+++++|+| .||++.... ++|+.+|+...+ ....+.. + ..|.+++++++|+
T Consensus 343 ---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~-~~~~~~~-~----~~~~~~~~s~dg~ 413 (433)
T 3bws_A 343 ---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT-VKEFWEA-G----NQPTGLDVSPDNR 413 (433)
T ss_dssp ---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE-EEEEEEC-S----SSEEEEEECTTSC
T ss_pred ---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc-EEEEecC-C----CCCceEEEcCCCC
Confidence 12348899999999 788888764 599999998763 4444543 2 3488999999986
Q ss_pred -EEEEecCCCeEEEEEcC
Q 039428 265 -LVVAGNPYPSARLVESS 281 (335)
Q Consensus 265 -l~va~~~~~~~~v~~~~ 281 (335)
+++++...+.+++++.+
T Consensus 414 ~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 414 YLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEETTTTEEEEEEET
T ss_pred EEEEEECCCCeEEEEEec
Confidence 55555445778877653
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-10 Score=113.44 Aligned_cols=207 Identities=15% Similarity=0.066 Sum_probs=137.5
Q ss_pred ceeeeEEcCC-CCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 50 LCETAKWDDV-GRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 50 ~pegia~d~~-g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.|..+.+..+ ++++|++ ..+++|.++|..+++ ++. .+. .+..|+++++++++..+||++.|
T Consensus 155 ~P~~~~~~~d~~~~~~V~~~~~~~V~viD~~t~~----v~~---~i~----~g~~p~~v~~SpDGr~lyv~~~d------ 217 (567)
T 1qks_A 155 RPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYE----IKT---VLD----TGYAVHISRLSASGRYLFVIGRD------ 217 (567)
T ss_dssp SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCC----EEE---EEE----CSSCEEEEEECTTSCEEEEEETT------
T ss_pred cccccccccCCCceEEEEeCCCCeEEEEECCCCe----EEE---EEe----CCCCccceEECCCCCEEEEEcCC------
Confidence 3555555444 4567777 778999999965444 232 221 12368899999877788996422
Q ss_pred ceEEEEECC--CCeEEEEeecCCCccCCCCCCceeEC----CCC-cEEEEeCCCCeEEEEccCCc-EEEEecCCcccccc
Q 039428 128 SALAAYDLS--TWKRLFLTQLSGKSEEKSTADDIAVD----AEG-NAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKE 199 (335)
Q Consensus 128 ~~v~~~d~~--~~~~~~~~~~~~~~~~~~~p~~~~vd----~~G-~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~ 199 (335)
+.|.+||+. ++++...+.. ...|.+++++ ||| .+||++...+.|.++|.... .+..+.........
T Consensus 218 g~V~viD~~~~t~~~v~~i~~------G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~ 291 (567)
T 1qks_A 218 GKVNMIDLWMKEPTTVAEIKI------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE 291 (567)
T ss_dssp SEEEEEETTSSSCCEEEEEEC------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT
T ss_pred CeEEEEECCCCCCcEeEEEec------CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccc
Confidence 469999995 6666644433 3468899999 698 59999999999999997643 33322211100000
Q ss_pred -ccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEE
Q 039428 200 -WYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSAR 276 (335)
Q Consensus 200 -~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~ 276 (335)
.......+.+|..++++ ..+++...+++|+.+|....+ ......+.. . ..|.++.++++|+ +|++++.++.+.
T Consensus 292 ~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~-~~~v~~i~~-~--~~~~d~~~~pdgr~~~va~~~sn~V~ 367 (567)
T 1qks_A 292 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN-NLKTTEISA-E--RFLHDGGLDGSHRYFITAANARNKLV 367 (567)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS-EEEEEEEEC-C--SSEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc-cceeeeeec-c--ccccCceECCCCCEEEEEeCCCCeEE
Confidence 00001134588889887 788888899999999998753 233222222 1 3488999999996 677777779999
Q ss_pred EEEcCCC
Q 039428 277 LVESSDG 283 (335)
Q Consensus 277 v~~~~~~ 283 (335)
|++...+
T Consensus 368 ViD~~t~ 374 (567)
T 1qks_A 368 VIDTKEG 374 (567)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 9998765
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-11 Score=116.84 Aligned_cols=240 Identities=15% Similarity=0.121 Sum_probs=150.6
Q ss_pred CCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEE-e-CCCCeEEEEEec-------CC-----
Q 039428 59 VGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAV-D-RPRNRLLVAFTD-------VL----- 123 (335)
Q Consensus 59 ~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~-d-~~~g~l~v~~~D-------~~----- 123 (335)
+|+.+|++ ..+++|.++|....+ +. ..+..|. +..|+|+++ . |+.+.+|+++.. ..
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~-----~~--~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMK-----CD--AILEIPN--AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTE-----EE--EEEECSS--CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred CCCEEEEEcCCCCEEEEEECCCce-----Ee--eEEeCCC--CCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence 78888888 667899999964333 12 2334443 247999998 4 677889886311 00
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCC--------------CeEEEEcc------
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVS--------------SKIWKVGV------ 182 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~--------------~~I~~~d~------ 182 (335)
+.-.+.+.++|.++.++.+.+.. ...|.+++++++|+ +|++...+ ..|.+++.
T Consensus 171 ~~~~~~vtvID~~t~~v~~qI~V------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~ 244 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEVAWQVLV------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA 244 (595)
T ss_dssp GGEEEEEEEEETTTTEEEEEEEE------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred cccCceEEEEECCCCeEEEEEEe------CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence 00025799999999998877765 12689999999985 88887654 33444442
Q ss_pred --CCcEE-----EEecCCcc--cc-ccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCc-----------eeE
Q 039428 183 --EGQLL-----SIIRSPLF--TA-KEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEE-----------EEV 240 (335)
Q Consensus 183 --~g~~~-----~~~~~~~~--~~-~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~-----------~~~ 240 (335)
+|+.. .++..... .. ....+....|+|+.++||| ++||++..+++|.+||.+..+ ...
T Consensus 245 v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~ 324 (595)
T 1fwx_A 245 IAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 324 (595)
T ss_dssp HHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred ccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence 22211 11111110 00 0112345679999999999 899999999999999998531 011
Q ss_pred EEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCc------EEEEEeeeecCCCCCcc------eEEEE--
Q 039428 241 KLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGW------ETASVVAKFNGPTHRVA------TAATV-- 306 (335)
Q Consensus 241 ~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~------~~~~~~~~~~~p~~~~P------t~va~-- 306 (335)
..+. .| .+|.+++++++|++|+++.-++.+.+++.+... +..+++.++. .+-.| .++++
T Consensus 325 ~~v~-vG----~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid--V~yqpGh~~~~~g~t~~~ 397 (595)
T 1fwx_A 325 AEPE-LG----LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD--VHYQPGHLKTVMGETLDA 397 (595)
T ss_dssp ECCB-CC----SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE--CSSCEEEEEETTTTSTTC
T ss_pred EEcC-CC----CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEee--cccccccceeccceEeCC
Confidence 1222 23 359999999999999998877888888765410 1123344432 22223 22333
Q ss_pred eCCeEEEEeccCCC
Q 039428 307 KDGRVYLSHLLGLG 320 (335)
Q Consensus 307 ~~g~lyV~~~~~~~ 320 (335)
++..||+++.++..
T Consensus 398 DGk~l~~~Nk~skd 411 (595)
T 1fwx_A 398 TNDWLVCLSKFSKD 411 (595)
T ss_dssp CSSEEEEEESCCTT
T ss_pred CCCEEEEcCCCCcc
Confidence 36779998877643
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-09 Score=101.98 Aligned_cols=117 Identities=13% Similarity=0.036 Sum_probs=76.7
Q ss_pred EcCCCCEEEEE-e-cCC---eEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC----CCCc
Q 039428 56 WDDVGRRFLVS-F-LDG---GVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV----LGNK 126 (335)
Q Consensus 56 ~d~~g~~~~~~-~-~~~---~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~----~~~~ 126 (335)
..++++.+|+. . ..+ .|+++|..+++ ++. .+ + .+..| +|+++|++..+||++... .+..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~----~~~---~i--~--~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~ 95 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGS----ILG---HV--N--GGFLP-NPVAAHSGSEFALASTSFSRIAKGKR 95 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCe----EEE---Ee--c--CCCCC-CeEECCCCCEEEEEeccccccccCCC
Confidence 34677777777 4 333 88999965443 222 22 2 12357 999999888999975311 0111
Q ss_pred cceEEEEECCCCeEEEEeecCCCcc--CCCCCCceeECCCCc-EEEEeCC-CCeEEEEccCCc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSE--EKSTADDIAVDAEGN-AYVTDVV-SSKIWKVGVEGQ 185 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~p~~~~vd~~G~-lyV~d~~-~~~I~~~d~~g~ 185 (335)
.+.|.+||+++.++...+.+..... ....|.+++++|||+ +||++.. .+.|.++| ++.
T Consensus 96 ~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~ 157 (373)
T 2mad_H 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG 157 (373)
T ss_pred CCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC
Confidence 1468999999887775555431111 125688999999985 9999865 68999999 754
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-10 Score=102.46 Aligned_cols=208 Identities=14% Similarity=0.076 Sum_probs=129.8
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCc---CCCCcceEEEeCCCCeEEEEEecC---
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDV---VGNATMGIAVDRPRNRLLVAFTDV--- 122 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~---~~~~p~Gi~~d~~~g~l~v~~~D~--- 122 (335)
.|.+++++++|+.+|++ ..++.|+++|..+++ +.. .+..+.. .+..+.++++++++..||++..+.
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~----~~~---~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 116 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK----NTF---HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL 116 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTE----EEE---EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc----EEE---EEEcccccccccccccceEECCCCCEEEEEccccccc
Confidence 58899999999877666 567899999965443 121 2222210 012478999998666788865330
Q ss_pred ---CCCccceEEEEECCCCeEE---EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCcc
Q 039428 123 ---LGNKYSALAAYDLSTWKRL---FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLF 195 (335)
Q Consensus 123 ---~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~ 195 (335)
.......|.+||+++++.. ..... ...+.+++++++|++|+++ +.|+++|.+ ++....+.....
T Consensus 117 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~s~dg~l~~~~---~~i~~~d~~~~~~~~~~~~~~~ 187 (349)
T 1jmx_B 117 NDHYVVKPPRLEVFSTADGLEAKPVRTFPM------PRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNW 187 (349)
T ss_dssp SSCEEECCCEEEEEEGGGGGGBCCSEEEEC------CSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTC
T ss_pred ccccccCCCeEEEEECCCccccceeeeccC------CCcccceeECCCCcEEEcc---CcEEEEeCCCCceecccccccc
Confidence 0000146999998875322 11111 2357789999999988863 349999986 444433321110
Q ss_pred ccc--------------cc--------------------------------------------cccccccCeEEEcc-CC
Q 039428 196 TAK--------------EW--------------------------------------------YKNVFGLNGIVYHP-DG 216 (335)
Q Consensus 196 ~~~--------------~~--------------------------------------------~~~~~~p~Gia~~~-dg 216 (335)
..+ .. .+....+.+++++| ||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg 267 (349)
T 1jmx_B 188 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP 267 (349)
T ss_dssp CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT
T ss_pred CCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC
Confidence 000 00 00012466788889 99
Q ss_pred -eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEEEEcCCC
Q 039428 217 -FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 217 -~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~~~~~ 283 (335)
.||++ .++|+++|+...+ ....+.. + ..|.+++++++| .||+++. .+.+.+++...+
T Consensus 268 ~~l~~~---~~~v~~~d~~~~~-~~~~~~~-~----~~~~~~~~s~dg~~l~~~~~-~~~v~v~d~~~~ 326 (349)
T 1jmx_B 268 NQIYGV---LNRLAKYDLKQRK-LIKAANL-D----HTYYCVAFDKKGDKLYLGGT-FNDLAVFNPDTL 326 (349)
T ss_dssp TEEEEE---ESEEEEEETTTTE-EEEEEEC-S----SCCCEEEECSSSSCEEEESB-SSEEEEEETTTT
T ss_pred CEEEEE---cCeEEEEECccCe-EEEEEcC-C----CCccceEECCCCCEEEEecC-CCeEEEEecccc
Confidence 78877 7899999998873 4445543 2 248899999997 4777643 377888887654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=8.9e-10 Score=99.91 Aligned_cols=166 Identities=16% Similarity=0.129 Sum_probs=105.7
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
.|+++.+++.+|++...+++|+++|..+++ ++. .+..+.. ..+.++++++++..+|++.. .. +.|.
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~----~~~---~~~~~~~--~~~~~~~~s~dg~~~~v~~~--~~---~~i~ 68 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVASDT----VYK---SCVMPDK--FGPGTAMMAPDNRTAYVLNN--HY---GDIY 68 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETTTTE----EEE---EEECSSC--CSSCEEEECTTSSEEEEEET--TT---TEEE
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECCCCc----EEE---EEecCCC--CCCceeEECCCCCEEEEEeC--CC---CcEE
Confidence 477888887777777888999999965444 122 2222221 15789999985456888542 11 4699
Q ss_pred EEECCCCeEEEEeecCCC-ccCCCCCCceeECCCCc-EEEEeCC-----------CCeEEEEccCCcE-EEEecCCcccc
Q 039428 132 AYDLSTWKRLFLTQLSGK-SEEKSTADDIAVDAEGN-AYVTDVV-----------SSKIWKVGVEGQL-LSIIRSPLFTA 197 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~-~~~~~~p~~~~vd~~G~-lyV~d~~-----------~~~I~~~d~~g~~-~~~~~~~~~~~ 197 (335)
+||+++++.......... ......|++++++|+|+ +|++... .+.|+++|.++.. ...+ ..+..
T Consensus 69 ~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~ 146 (349)
T 1jmx_B 69 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV--RTFPM 146 (349)
T ss_dssp EEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS--EEEEC
T ss_pred EEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee--eeccC
Confidence 999999887755443210 00024588999999995 8887643 5799999976421 1100 00111
Q ss_pred ccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEE
Q 039428 198 KEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLI 243 (335)
Q Consensus 198 ~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~ 243 (335)
...+.+++++|||.+|++ ++.|+++|+..++ ....+
T Consensus 147 ------~~~~~~~~~s~dg~l~~~---~~~i~~~d~~~~~-~~~~~ 182 (349)
T 1jmx_B 147 ------PRQVYLMRAADDGSLYVA---GPDIYKMDVKTGK-YTVAL 182 (349)
T ss_dssp ------CSSCCCEEECTTSCEEEE---SSSEEEECTTTCC-EEEEE
T ss_pred ------CCcccceeECCCCcEEEc---cCcEEEEeCCCCc-eeccc
Confidence 124789999999998885 3349999987763 33344
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-10 Score=106.31 Aligned_cols=196 Identities=12% Similarity=0.134 Sum_probs=127.1
Q ss_pred CcceEEEeCCCCeEEEEEecCC-C------CccceEEEEECCC--CeEEEEeecCC--CccCCCCCCceeECC--CC--c
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVL-G------NKYSALAAYDLST--WKRLFLTQLSG--KSEEKSTADDIAVDA--EG--N 166 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~-~------~~~~~v~~~d~~~--~~~~~~~~~~~--~~~~~~~p~~~~vd~--~G--~ 166 (335)
.|..|++++ +|.+|+++.... + ...+.|+++|+++ .+... ..+.+ .......|.|+.+.+ +| +
T Consensus 51 G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~-l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSE-LEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEE-CEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEE-EEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 567888886 788888652100 0 1125799999873 33321 11211 112246899999855 45 6
Q ss_pred EEEEeCCC--C--eEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEEC-----------------CC
Q 039428 167 AYVTDVVS--S--KIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHM-----------------CS 225 (335)
Q Consensus 167 lyV~d~~~--~--~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~-----------------~~ 225 (335)
+||++... . .|++++++++....+.. +.. ..+..||.++++++|.+|+++. ..
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~--~~g----~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKT--IRH----KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEE--ECC----TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEec--ccc----CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc
Confidence 99998763 2 48888888776554432 111 1345699999999999999976 25
Q ss_pred CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEE
Q 039428 226 GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAA 304 (335)
Q Consensus 226 ~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~v 304 (335)
++|+++++.. .+.+. .+ +..|.|+++++|| .+||++...+.+++++..++++... ...+.. ...|.++
T Consensus 203 g~vyr~d~~~----~~~~~-~~---l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~-~~~~~~--~g~PDGi 271 (355)
T 3sre_A 203 SFVTYYSPND----VRVVA-EG---FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP-LRVLSF--DTLVDNI 271 (355)
T ss_dssp EEEEEECTTC----CEEEE-EE---ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE-EEEEEC--SSEEEEE
T ss_pred cEEEEEECCe----EEEee-cC---CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec-CEEEeC--CCCCceE
Confidence 7899999842 23332 22 5679999999998 6999987668888888754322211 122322 3568999
Q ss_pred EEe-C-CeEEEEec
Q 039428 305 TVK-D-GRVYLSHL 316 (335)
Q Consensus 305 a~~-~-g~lyV~~~ 316 (335)
+++ + |+|||+..
T Consensus 272 ~vD~e~G~lwva~~ 285 (355)
T 3sre_A 272 SVDPVTGDLWVGCH 285 (355)
T ss_dssp EECTTTCCEEEEEE
T ss_pred EEeCCCCcEEEEec
Confidence 997 4 99999654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.8e-11 Score=108.57 Aligned_cols=202 Identities=17% Similarity=0.236 Sum_probs=126.4
Q ss_pred CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCC-CccCCCCCCceeECCC----CcEEEEeC--C
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSG-KSEEKSTADDIAVDAE----GNAYVTDV--V 173 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~p~~~~vd~~----G~lyV~d~--~ 173 (335)
..|.+|++.+ +|++||+ +... ++|++++.++++......++. ...+...+.||+++|+ |.+||+.+ .
T Consensus 32 ~~P~~ia~~p-dG~llVt--er~~---G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 32 NSPWGLAPLP-GGDLLVS--SRDE---ATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp SSEEEEEECT-TSCEEEE--ETTT---CEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred CCceEEEEcC-CCcEEEE--EecC---CEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 3789999997 7999995 3311 469999987665543222221 1123678999999985 78999753 5
Q ss_pred CCeEEEEccCCc---------EEEEecCCccccccccccccccCeEEEccCCeEEEEEC-------------CCCEEEEE
Q 039428 174 SSKIWKVGVEGQ---------LLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHM-------------CSGNLFKI 231 (335)
Q Consensus 174 ~~~I~~~d~~g~---------~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~-------------~~~~v~~~ 231 (335)
.++|.|+..++. ...++.. + | .......+.|+++|||+|||+.. ..++|+|+
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~--~--p--~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi 179 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRG--I--P--KGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM 179 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEE--E--C--CCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEc--C--C--CCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE
Confidence 679999987651 1121210 0 1 01223467899999999999953 36899999
Q ss_pred eCCCCc--e----eEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCC---eEEEEEcCCC--cEEEEEe---eeecCC-
Q 039428 232 DIRKEE--E----EVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYP---SARLVESSDG--WETASVV---AKFNGP- 296 (335)
Q Consensus 232 d~~~~~--~----~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~---~~~v~~~~~~--~~~~~~~---~~~~~p- 296 (335)
++++.- . ..+++.. | +..|.||++|++|.||+++++.+ .+..+..... |...+-. ..+..|
T Consensus 180 ~~dG~ip~~nPf~~~~i~a~-G---~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~ 255 (347)
T 3das_A 180 TPDGEPAPGNPFPGSPVYSY-G---HRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPV 255 (347)
T ss_dssp CTTSSBCTTCSSTTCCEEEB-C---CSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCS
T ss_pred eCCCCccCCCCCCCCeEEee-C---CCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCc
Confidence 998740 0 1134442 3 46799999999999999977432 3444432211 3211100 011111
Q ss_pred -----CCCcceEEEEeCCeEEEEeccC
Q 039428 297 -----THRVATAATVKDGRVYLSHLLG 318 (335)
Q Consensus 297 -----~~~~Pt~va~~~g~lyV~~~~~ 318 (335)
....|+++++-+|.+|+.+..+
T Consensus 256 ~~~~~~~~ap~G~~~~~g~~~~~~l~~ 282 (347)
T 3das_A 256 AQWSTDEASPSGIAYAEGSVWMAGLRG 282 (347)
T ss_dssp EEECTTTCCEEEEEEETTEEEEEESTT
T ss_pred EecCCCCCCCcceEEEcCceeeccccC
Confidence 1246889999888999876543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-09 Score=97.12 Aligned_cols=148 Identities=14% Similarity=0.067 Sum_probs=97.1
Q ss_pred EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEE
Q 039428 62 RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRL 141 (335)
Q Consensus 62 ~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~ 141 (335)
++++...+++|..+|..+++ ++. .+..+... ..|.++++++++..+|++..+ . ..|.+||+++++..
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~----~~~---~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~--~---~~v~~~d~~~~~~~ 69 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMA----VDK---VITIADAG-PTPMVPMVAPGGRIAYATVNK--S---ESLVKIDLVTGETL 69 (337)
T ss_dssp EEEEEETTTEEEEEETTTTE----EEE---EEECTTCT-TCCCCEEECTTSSEEEEEETT--T---TEEEEEETTTCCEE
T ss_pred EEEEcCCCCeEEEEECCCCc----EEE---EEEcCCCC-CCccceEEcCCCCEEEEEeCC--C---CeEEEEECCCCCeE
Confidence 45555778999999965443 122 22222100 047899999855578885432 1 46999999988876
Q ss_pred EEeecCCCccCCCCCCceeECCCC-cEEEEeC-----------CCCeEEEEccCCcEE-EEecCCccccccccccccccC
Q 039428 142 FLTQLSGKSEEKSTADDIAVDAEG-NAYVTDV-----------VSSKIWKVGVEGQLL-SIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 142 ~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~-----------~~~~I~~~d~~g~~~-~~~~~~~~~~~~~~~~~~~p~ 208 (335)
.......+......|.+++++++| .+|+++. ..+.|+++|.++... ..+. ....++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-----------~~~~~~ 138 (337)
T 1pby_B 70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-----------APRQIT 138 (337)
T ss_dssp EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-----------CCSSCC
T ss_pred eeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe-----------CCCCcc
Confidence 544442111002368899999998 5888852 358999999876443 2221 123488
Q ss_pred eEEEccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 209 GIVYHPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 209 Gia~~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
+++++||| +||++ ++.|+++|+.++
T Consensus 139 ~~~~s~dg~~l~~~---~~~i~~~d~~~~ 164 (337)
T 1pby_B 139 MLAWARDGSKLYGL---GRDLHVMDPEAG 164 (337)
T ss_dssp CEEECTTSSCEEEE---SSSEEEEETTTT
T ss_pred eeEECCCCCEEEEe---CCeEEEEECCCC
Confidence 99999999 68888 467888888765
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.5e-10 Score=104.98 Aligned_cols=207 Identities=17% Similarity=0.112 Sum_probs=130.7
Q ss_pred ceeeeEEcCCCCEEEEEecC------CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC
Q 039428 50 LCETAKWDDVGRRFLVSFLD------GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~------~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
.|.++.+.|+| +|+....+ +.|.++|..+.+ ++. ++. .+......+..+-+.++.+.+|+ ++..
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~----v~~--~~~-~~~~~~~~~Yd~~~~p~~~~mvs--S~wg 208 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE----PLG--KWE-IDRGDQYLAYDFWWNLPNEVLVS--SEWA 208 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC----EEE--ECC-SBCTTCCCCCCEEEETTTTEEEE--CBCC
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe----EEE--EEc-cCCCCccccceEEECCCCCEEEE--ccCc
Confidence 79999999999 66544444 789999964343 233 131 11111123455777885555555 3321
Q ss_pred -----------C----CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeE--CCCCc-EEEEeC-----CCCeEEEE
Q 039428 124 -----------G----NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAV--DAEGN-AYVTDV-----VSSKIWKV 180 (335)
Q Consensus 124 -----------~----~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~v--d~~G~-lyV~d~-----~~~~I~~~ 180 (335)
. ...++|.+||.+++++...+++..+ ...|..+.+ +|+|+ +||+.. .++.|+++
T Consensus 209 ~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~---g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~ 285 (462)
T 2ece_A 209 VPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE---NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLW 285 (462)
T ss_dssp CHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT---EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEE
T ss_pred CccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC---CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEE
Confidence 0 0125799999999887766666321 356778877 99985 999998 88899887
Q ss_pred ccCCcEEE---EecCCc--ccc--ccc----cccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCc--eeEEEEecc
Q 039428 181 GVEGQLLS---IIRSPL--FTA--KEW----YKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEE--EEVKLIELR 246 (335)
Q Consensus 181 d~~g~~~~---~~~~~~--~~~--~~~----~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~--~~~~~~~~~ 246 (335)
..++.... ++.-+. ... |.. ......|.+|.+++|| +|||++...+.|.+||+.... ..+..+...
T Consensus 286 ~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tG 365 (462)
T 2ece_A 286 FYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLG 365 (462)
T ss_dssp EEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECB
T ss_pred EecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeC
Confidence 66532211 111010 000 000 0012458999999999 999999999999999986331 144556554
Q ss_pred CC----------cCCCCCCeEEEcCCC-cEEEEe
Q 039428 247 GG----------SSLSLGDGLALLSPT-KLVVAG 269 (335)
Q Consensus 247 g~----------~~~~~pdGia~d~~g-~l~va~ 269 (335)
|. .....|.+++++++| .|||++
T Consensus 366 G~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 366 GIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 31 111369999999998 599998
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=3e-09 Score=98.64 Aligned_cols=106 Identities=12% Similarity=0.072 Sum_probs=71.0
Q ss_pred CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEec----CCCCccceEEEEECCCCeEEEEe
Q 039428 69 DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD----VLGNKYSALAAYDLSTWKRLFLT 144 (335)
Q Consensus 69 ~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D----~~~~~~~~v~~~d~~~~~~~~~~ 144 (335)
++.|++||..+++ ++. .+.. +..| ++++++++..+|+++.. ..+...+.|.+||.++++....+
T Consensus 30 d~~v~v~D~~t~~----~~~---~i~~----g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i 97 (361)
T 2oiz_A 30 ESRVHVYDYTNGK----FLG---MVPT----AFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEI 97 (361)
T ss_dssp GCEEEEEETTTCC----EEE---EEEC----CEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEE
T ss_pred cCeEEEEECCCCe----EEE---EecC----CCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEE
Confidence 5699999965454 222 2211 2367 99999977889997531 01111246999999988777555
Q ss_pred ecCCC-ccCCCCCCceeECCCCc-EEEEeCC-CCeEEEEccCCcE
Q 039428 145 QLSGK-SEEKSTADDIAVDAEGN-AYVTDVV-SSKIWKVGVEGQL 186 (335)
Q Consensus 145 ~~~~~-~~~~~~p~~~~vd~~G~-lyV~d~~-~~~I~~~d~~g~~ 186 (335)
.+... ......|.+++++|||+ +|+++.. .+.|.+||.+...
T Consensus 98 ~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~ 142 (361)
T 2oiz_A 98 SLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD 142 (361)
T ss_dssp EECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE
T ss_pred EcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc
Confidence 44211 11136799999999985 9999875 6899999987543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-10 Score=106.02 Aligned_cols=231 Identities=12% Similarity=-0.017 Sum_probs=131.3
Q ss_pred CEEEEEecCC----eEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC----CCCccceEEE
Q 039428 61 RRFLVSFLDG----GVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV----LGNKYSALAA 132 (335)
Q Consensus 61 ~~~~~~~~~~----~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~----~~~~~~~v~~ 132 (335)
.+|+.+...+ +|.++|..+.+ ++. .+ + .+..| |++++++...+||++... .+.+.+.|.+
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~----v~~---~i--~--vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~Vsv 100 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGV----TLG---HS--L--GAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEV 100 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTE----EEE---EE--E--ECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEE
T ss_pred eEEEECCccCCccceEEEEECCCCe----EEE---EE--e--CCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 3444445555 89999964443 333 22 1 12367 999999888999986321 1111257999
Q ss_pred EECCCCeEEEEeecCCCcc--CCCCCCceeECCCC-cEEEEeCC-CCeEEE--EccCCcEEEEecCCc-c-cccc-----
Q 039428 133 YDLSTWKRLFLTQLSGKSE--EKSTADDIAVDAEG-NAYVTDVV-SSKIWK--VGVEGQLLSIIRSPL-F-TAKE----- 199 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~--~~~~p~~~~vd~~G-~lyV~d~~-~~~I~~--~d~~g~~~~~~~~~~-~-~~~~----- 199 (335)
||+.++++...+.++.... ....|.+++++||| .+||++.. .+.|.+ +|+.. ...+..+. + ..|.
T Consensus 101 iD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~~~~~~p~g~~~~ 178 (368)
T 1mda_H 101 FDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASCFHIHPGAAATH 178 (368)
T ss_dssp ECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSCCCCEEEETTEE
T ss_pred EECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECCCceEEccCCCeEE
Confidence 9999999886665531110 12579999999998 59999875 677888 88865 22221100 0 0000
Q ss_pred ---------------c---------------cccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCc-eeEEEEeccC
Q 039428 200 ---------------W---------------YKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEE-EEVKLIELRG 247 (335)
Q Consensus 200 ---------------~---------------~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~-~~~~~~~~~g 247 (335)
. ......|. + .+++ .+|+... +.|+.+|..+.+ .....+.+..
T Consensus 179 ~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~--~~V~viD~~~~~~~v~~~~~~~~ 253 (368)
T 1mda_H 179 YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA--SSILQGDIPAAGATMKAAIDGNE 253 (368)
T ss_dssp ECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS--SCCEEEECCSSCCEEECCCCSSC
T ss_pred EEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC--CEEEEEECCCCcceEEEEEEecc
Confidence 0 00011222 3 3333 5555554 788888886541 0111122110
Q ss_pred C---cCCCCCCe---EEEcCCC-cEEEEec---C-----CCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe-CC-e
Q 039428 248 G---SSLSLGDG---LALLSPT-KLVVAGN---P-----YPSARLVESSDGWETASVVAKFNGPTHRVATAATVK-DG-R 310 (335)
Q Consensus 248 ~---~~~~~pdG---ia~d~~g-~l~va~~---~-----~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~-~g-~ 310 (335)
. ..-..|.| ++++++| ++||+.. + .+...|++.... +++.++. .+..|.++++. +| +
T Consensus 254 ~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~----~vv~~i~--vg~~p~gi~~s~Dg~~ 327 (368)
T 1mda_H 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG----QTSGPIS--NGHDSDAIIAAQDGAS 327 (368)
T ss_dssp THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC----CEEECCE--EEEEECEEEECCSSSC
T ss_pred ccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC----eEEEEEE--CCCCcceEEECCCCCE
Confidence 0 00012555 8899986 6999854 3 345668887654 3344442 23358899995 44 5
Q ss_pred EEEEec
Q 039428 311 VYLSHL 316 (335)
Q Consensus 311 lyV~~~ 316 (335)
+||+..
T Consensus 328 l~va~~ 333 (368)
T 1mda_H 328 DNYANS 333 (368)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 998766
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.8e-09 Score=93.29 Aligned_cols=214 Identities=12% Similarity=0.138 Sum_probs=135.1
Q ss_pred eeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 53 TAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 53 gia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
.++++ +++ +|+...++.|+++|+. ++. . +..... ......+.+++ ++++|+++.+ ..|+.
T Consensus 102 ~~~~~-~~~-l~v~t~~~~l~~~d~~-g~~----~----~~~~~~--~~~~~~~~~~~-~g~l~vgt~~------~~l~~ 161 (330)
T 3hxj_A 102 DFTIF-EDI-LYVTSMDGHLYAINTD-GTE----K----WRFKTK--KAIYATPIVSE-DGTIYVGSND------NYLYA 161 (330)
T ss_dssp CEEEE-TTE-EEEECTTSEEEEECTT-SCE----E----EEEECS--SCCCSCCEECT-TSCEEEECTT------SEEEE
T ss_pred CceEE-CCE-EEEEecCCEEEEEcCC-CCE----E----EEEcCC--CceeeeeEEcC-CCEEEEEcCC------CEEEE
Confidence 34554 444 5555567899999854 541 1 211111 11345667775 7899995321 35999
Q ss_pred EECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEE
Q 039428 133 YDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVY 212 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~ 212 (335)
+|++ ++..+..... ......+.+|++|++|++. +.|+++|++|+....... ......++++
T Consensus 162 ~d~~-g~~~~~~~~~-----~~~~~~~~~d~~g~l~v~t---~~l~~~d~~g~~~~~~~~----------~~~~~~~~~~ 222 (330)
T 3hxj_A 162 INPD-GTEKWRFKTN-----DAITSAASIGKDGTIYFGS---DKVYAINPDGTEKWNFYA----------GYWTVTRPAI 222 (330)
T ss_dssp ECTT-SCEEEEEECS-----SCCCSCCEECTTCCEEEES---SSEEEECTTSCEEEEECC----------SSCCCSCCEE
T ss_pred ECCC-CCEeEEEecC-----CCceeeeEEcCCCEEEEEe---CEEEEECCCCcEEEEEcc----------CCcceeceEE
Confidence 9998 7666554432 2355678999999999986 889999987766542211 1123778899
Q ss_pred ccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeee
Q 039428 213 HPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAK 292 (335)
Q Consensus 213 ~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~ 292 (335)
+++|.||++.. ++.|++++.++. ....+.... ..+..+.++++|++|++... +.+..++. ++- ....
T Consensus 223 ~~~g~l~v~t~-~~gl~~~~~~g~--~~~~~~~~~----~~~~~~~~~~~g~l~v~t~~-ggl~~~d~-~g~----~~~~ 289 (330)
T 3hxj_A 223 SEDGTIYVTSL-DGHLYAINPDGT--EKWRFKTGK----RIESSPVIGNTDTIYFGSYD-GHLYAINP-DGT----EKWN 289 (330)
T ss_dssp CTTSCEEEEET-TTEEEEECTTSC--EEEEEECSS----CCCSCCEECTTSCEEEECTT-CEEEEECT-TSC----EEEE
T ss_pred CCCCeEEEEcC-CCeEEEECCCCC--EeEEeeCCC----CccccceEcCCCeEEEecCC-CCEEEECC-CCc----EEEE
Confidence 99999999875 567999987665 444454322 23556888889999999662 46777764 331 1112
Q ss_pred ecCCCCCcceEEEEe-CCeEEEEeccCC
Q 039428 293 FNGPTHRVATAATVK-DGRVYLSHLLGL 319 (335)
Q Consensus 293 ~~~p~~~~Pt~va~~-~g~lyV~~~~~~ 319 (335)
+..+ .....++.++ +|+|||....|.
T Consensus 290 ~~~~-~~~~~~~~~d~~g~l~~gt~~G~ 316 (330)
T 3hxj_A 290 FETG-SWIIATPVIDENGTIYFGTRNGK 316 (330)
T ss_dssp EECS-SCCCSCCEECTTCCEEEECTTSC
T ss_pred EEcC-CccccceEEcCCCEEEEEcCCCe
Confidence 2222 1223456674 899999765544
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-09 Score=100.26 Aligned_cols=121 Identities=14% Similarity=0.026 Sum_probs=82.2
Q ss_pred EEcCCCCEEEEE-ec----CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC----CCC
Q 039428 55 KWDDVGRRFLVS-FL----DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV----LGN 125 (335)
Q Consensus 55 a~d~~g~~~~~~-~~----~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~----~~~ 125 (335)
+..|+++.+|+. .. .++|+++|..+.+ ++. .+ + .|..|+ ++++|++..+||++.-. .+.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~----v~~---~I--~--vG~~P~-va~spDG~~lyVan~~~~r~~~G~ 106 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGR----VIG---MI--D--GGFLPN-PVVADDGSFIAHASTVFSRIARGE 106 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTE----EEE---EE--E--ECSSCE-EEECTTSSCEEEEEEEEEETTEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCe----EEE---EE--E--CCCCCc-EEECCCCCEEEEEcccccccccCC
Confidence 346888888888 43 5799999964443 333 22 1 123575 99999778899975210 011
Q ss_pred ccceEEEEECCCCeEEEEeecCC--CccCCCCCCceeECCCCc-EEEEeCC-CCeEEEEccCCcEE
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSG--KSEEKSTADDIAVDAEGN-AYVTDVV-SSKIWKVGVEGQLL 187 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~p~~~~vd~~G~-lyV~d~~-~~~I~~~d~~g~~~ 187 (335)
..+.|.+||.+++++...+.++. ..+....|.++++++||+ +||++.. .+.|.++|......
T Consensus 107 ~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 107 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE
Confidence 11469999999998876555421 001135899999999995 9999864 78999999986543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-10 Score=112.09 Aligned_cols=155 Identities=12% Similarity=0.143 Sum_probs=103.8
Q ss_pred CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCc---cCCCCCCceeECC----CCcEEEEeCC
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKS---EEKSTADDIAVDA----EGNAYVTDVV 173 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~p~~~~vd~----~G~lyV~d~~ 173 (335)
..|.+|++++ +|+|||+ +..+ .+|++++..+++......+.... .+...+.||+++| +|.+||+.+.
T Consensus 27 ~~P~~~a~~p-dG~l~V~--e~~g---g~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~ 100 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLT--ERAT---GKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTF 100 (454)
T ss_dssp SSEEEEEECT-TSCEEEE--ETTT---CEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCceEEEEcC-CCcEEEE--EcCC---CEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEec
Confidence 3789999997 8999995 4432 25999988666554333332210 1245677999999 6889999864
Q ss_pred ------------CCeEEEEccCC---cE---EEEecCCccccccccccccccCeEEEccCCeEEEEECC-----------
Q 039428 174 ------------SSKIWKVGVEG---QL---LSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC----------- 224 (335)
Q Consensus 174 ------------~~~I~~~d~~g---~~---~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~----------- 224 (335)
..+|+|++.+. +. ..++.. + | ......+++|++++||+|||+...
T Consensus 101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~--~--p--~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~ 174 (454)
T 1cru_A 101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAG--L--P--SSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFL 174 (454)
T ss_dssp ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEE--E--C--CCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTS
T ss_pred cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEc--C--C--CCCCCCCCeEeECCCCeEEEEECCCCCCCcccccc
Confidence 46899998642 11 112210 1 1 012345899999999999998542
Q ss_pred ---------------------CCEEEEEeCCCCc--e-------eEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC
Q 039428 225 ---------------------SGNLFKIDIRKEE--E-------EVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP 271 (335)
Q Consensus 225 ---------------------~~~v~~~d~~~~~--~-------~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~ 271 (335)
.++|+|+++++.- . ..+++.. | +..|.||++|++|+||+++.+
T Consensus 175 ~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~-G---~RNp~gla~dp~G~L~~~d~g 247 (454)
T 1cru_A 175 PNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL-G---HRNPQGLAFTPNGKLLQSEQG 247 (454)
T ss_dssp CCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB-C---CSEEEEEEECTTSCEEEEEEC
T ss_pred ccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEE-C---CCCcceEEECCCCCEEEEecC
Confidence 4789999998741 0 1234443 3 467999999999999999764
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.17 E-value=6e-09 Score=106.22 Aligned_cols=237 Identities=13% Similarity=0.089 Sum_probs=145.7
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
..+++.|++|++|+.+ ..+.|+++++.+++ +. ....+.........|..|+ +|+||+++. ..|
T Consensus 409 v~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~-----~~---~~~~~~~~~~~v~~i~~d~-~g~lwigt~-------~Gl 471 (781)
T 3v9f_A 409 VLCSLKDSEGNLWFGT-YLGNISYYNTRLKK-----FQ---IIELEKNELLDVRVFYEDK-NKKIWIGTH-------AGV 471 (781)
T ss_dssp EEEEEECTTSCEEEEE-TTEEEEEECSSSCE-----EE---ECCSTTTCCCCEEEEEECT-TSEEEEEET-------TEE
T ss_pred eEEEEECCCCCEEEEe-ccCCEEEEcCCCCc-----EE---EeccCCCCCCeEEEEEECC-CCCEEEEEC-------Cce
Confidence 4577888888877654 45689999854343 22 2211122224567888885 899999643 249
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCC-ccccccccccccccCe
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSP-LFTAKEWYKNVFGLNG 209 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~-~~~~~~~~~~~~~p~G 209 (335)
.++|+++++.................+.+..|++|++|++... +.|++++++++....+... .+ .......
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~-~Gl~~~~~~~~~~~~~~~~~~l-------~~~~i~~ 543 (781)
T 3v9f_A 472 FVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG-GGVGIYTPDMQLVRKFNQYEGF-------CSNTINQ 543 (781)
T ss_dssp EEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS-SCEEEECTTCCEEEEECTTTTC-------SCSCEEE
T ss_pred EEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcC-CCEEEEeCCCCeEEEccCCCCC-------CCCeeEE
Confidence 9999988765432222111111356678999999999998653 4599999987655533211 01 0123578
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEE
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASV 289 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~ 289 (335)
|+.+++|+||++.. .|-|+++|+..+ ..+.+....+-.-....++..|++|+||++.. +++..++...+ +. ..
T Consensus 544 i~~d~~g~lWi~T~-~Glv~~~d~~~~--~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~--~Gl~~~~~~~~-~~-~~ 616 (781)
T 3v9f_A 544 IYRSSKGQMWLATG-EGLVCFPSARNF--DYQVFQRKEGLPNTHIRAISEDKNGNIWASTN--TGISCYITSKK-CF-YT 616 (781)
T ss_dssp EEECTTSCEEEEET-TEEEEESCTTTC--CCEEECGGGTCSCCCCCEEEECSSSCEEEECS--SCEEEEETTTT-EE-EE
T ss_pred EEECCCCCEEEEEC-CCceEEECCCCC--cEEEccccCCCCCceEEEEEECCCCCEEEEcC--CceEEEECCCC-ce-EE
Confidence 89999999999976 554499998876 44555432111112357899999999999976 56777775443 11 11
Q ss_pred eeeec-CCCCCc-ceEEEEe-CCeEEEEeccCC
Q 039428 290 VAKFN-GPTHRV-ATAATVK-DGRVYLSHLLGL 319 (335)
Q Consensus 290 ~~~~~-~p~~~~-Pt~va~~-~g~lyV~~~~~~ 319 (335)
..... .+...+ +.++..+ +|+||+....|.
T Consensus 617 ~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl 649 (781)
T 3v9f_A 617 YDHSNNIPQGSFISGCVTKDHNGLIYFGSINGL 649 (781)
T ss_dssp ECGGGTCCSSCEEEEEEEECTTSCEEEEETTEE
T ss_pred ecccCCccccccccCceEECCCCEEEEECCCce
Confidence 21111 121111 2344454 899999665443
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-07 Score=84.59 Aligned_cols=227 Identities=12% Similarity=0.133 Sum_probs=148.8
Q ss_pred CCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 46 SPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
+....-.++++++++.+++.+..++.|..||..+++. +. .+.... .....++++| +++.+++.. ..
T Consensus 78 gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~----~~---~~~~~~---~~~~~~~~sp-dg~~l~~g~-~d-- 143 (321)
T 3ow8_A 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ----IK---SIDAGP---VDAWTLAFSP-DSQYLATGT-HV-- 143 (321)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE----EE---EEECCT---TCCCCEEECT-TSSEEEEEC-TT--
T ss_pred cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE----EE---EEeCCC---ccEEEEEECC-CCCEEEEEc-CC--
Confidence 3334457889999998887778899999999654541 21 222211 2456899998 565555422 21
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCccccccccccc
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~~ 204 (335)
+.|..||.++++....... . ......++++|+|+..++.+..+.|..+|.... ....+.. ..
T Consensus 144 --g~v~i~~~~~~~~~~~~~~--~---~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~----------h~ 206 (321)
T 3ow8_A 144 --GKVNIFGVESGKKEYSLDT--R---GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG----------HA 206 (321)
T ss_dssp --SEEEEEETTTCSEEEEEEC--S---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----------CS
T ss_pred --CcEEEEEcCCCceeEEecC--C---CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc----------cC
Confidence 4699999988876643332 1 245678999999998888888899999998644 3332321 11
Q ss_pred cccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCc
Q 039428 205 FGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGW 284 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~ 284 (335)
...+.++++|++.++++-..++.|..+|....+ ....+. + . ......+++.++|.++++....+.+++.+...+
T Consensus 207 ~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~-~~~~~~--~-h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~- 280 (321)
T 3ow8_A 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN-LAGTLS--G-H-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR- 280 (321)
T ss_dssp SCCCEEEECTTSCEEEEECTTSCEEEEETTTCC-EEEEEC--C-C-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc-eeEEEc--C-C-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-
Confidence 236899999999888888889999999998763 333443 2 1 133578999999987777555577888887654
Q ss_pred EEEEEeeeecCCCCCcceEEEEe-CCeEEE
Q 039428 285 ETASVVAKFNGPTHRVATAATVK-DGRVYL 313 (335)
Q Consensus 285 ~~~~~~~~~~~p~~~~Pt~va~~-~g~lyV 313 (335)
+....+... ....+++++. +++..+
T Consensus 281 ---~~~~~~~~h-~~~v~~v~~s~~g~~l~ 306 (321)
T 3ow8_A 281 ---TCVHTFFDH-QDQVWGVKYNGNGSKIV 306 (321)
T ss_dssp ---EEEEEECCC-SSCEEEEEECTTSSEEE
T ss_pred ---EEEEEEcCC-CCcEEEEEECCCCCEEE
Confidence 223333222 1223567774 555444
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-09 Score=104.12 Aligned_cols=239 Identities=10% Similarity=-0.017 Sum_probs=149.2
Q ss_pred cceeeeEE-c-CCCCEEEEEe------------------cCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEE
Q 039428 49 FLCETAKW-D-DVGRRFLVSF------------------LDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAV 108 (335)
Q Consensus 49 ~~pegia~-d-~~g~~~~~~~------------------~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~ 108 (335)
.-|+|+++ . |+++.+|++. ..+.+.++|.. .. +++.+ + .-+ ..|.++++
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~-t~---~v~~q--I-~Vg----g~pd~~~~ 202 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD-KW---EVAWQ--V-LVS----GNLDNCDA 202 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETT-TT---EEEEE--E-EES----SCCCCEEE
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECC-CC---eEEEE--E-EeC----CCccceEE
Confidence 35999998 4 8998888882 23579999964 33 12322 1 112 26889999
Q ss_pred eCCCCeEEEEEecCCC------------C-----------------c---cceEEEEECCC--CeE-EEEeecCCCccCC
Q 039428 109 DRPRNRLLVAFTDVLG------------N-----------------K---YSALAAYDLST--WKR-LFLTQLSGKSEEK 153 (335)
Q Consensus 109 d~~~g~l~v~~~D~~~------------~-----------------~---~~~v~~~d~~~--~~~-~~~~~~~~~~~~~ 153 (335)
+++++.+|+++.++.. + + -+.|.++|.++ ++. ...++. .
T Consensus 203 spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv------g 276 (595)
T 1fwx_A 203 DYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI------A 276 (595)
T ss_dssp CSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE------E
T ss_pred CCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec------C
Confidence 9988889998744311 0 0 13477788776 433 333332 3
Q ss_pred CCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecC---CccccccccccccccCeEEEccCCeEEEEECCCCEEE
Q 039428 154 STADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRS---PLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLF 229 (335)
Q Consensus 154 ~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~---~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~ 229 (335)
..|.++.++|||+ +||++...++|.++|.+..... +.. +....-...+.+.+|.+++|++||++|++...+++|.
T Consensus 277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~-~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~ 355 (595)
T 1fwx_A 277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV-FYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVV 355 (595)
T ss_dssp SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH-HHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEE
T ss_pred CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc-cccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEE
Confidence 5899999999996 9999999999999998743100 000 0000000123456799999999999999999999999
Q ss_pred EEeCCC----------CceeEEEEeccCC--cCCCCCCeEEEcCCCc-EEEEecCC-CeE-----------EEEEcCCCc
Q 039428 230 KIDIRK----------EEEEVKLIELRGG--SSLSLGDGLALLSPTK-LVVAGNPY-PSA-----------RLVESSDGW 284 (335)
Q Consensus 230 ~~d~~~----------~~~~~~~~~~~g~--~~~~~pdGia~d~~g~-l~va~~~~-~~~-----------~v~~~~~~~ 284 (335)
+++++. .+ .+..++..-+ + .....|+++.+||+ ||++|..+ ++. .+++...+
T Consensus 356 kwdi~~a~~~~~g~~~~~-vi~kidV~yqpGh-~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~- 432 (595)
T 1fwx_A 356 KWNIEDAIRAYAGEKVDP-IKDKLDVHYQPGH-LKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD- 432 (595)
T ss_dssp EEEHHHHHHHHHTCSCCC-EEEEEECSSCEEE-EEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS-
T ss_pred EEEhhHhhhhhcccccce-eEEEeeccccccc-ceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC-
Confidence 999876 22 4555554210 1 12347888899996 66666655 444 66776433
Q ss_pred EEEEEeeeecCCCCCcceEEEEe-CCeE
Q 039428 285 ETASVVAKFNGPTHRVATAATVK-DGRV 311 (335)
Q Consensus 285 ~~~~~~~~~~~p~~~~Pt~va~~-~g~l 311 (335)
+ .+++... |.+..|..+.+. ...|
T Consensus 433 ~-m~lv~d~--p~~~ePh~~~i~~~~~~ 457 (595)
T 1fwx_A 433 K-MVLVHDG--PTFAEPHDAIAVHPSIL 457 (595)
T ss_dssp S-CEEEEEE--EESSCCCCEEEECTTTT
T ss_pred c-EEEEEEE--cCCCCCCceEEccHHHc
Confidence 1 2233222 224446666664 4433
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.13 E-value=6e-08 Score=86.99 Aligned_cols=194 Identities=12% Similarity=0.049 Sum_probs=131.7
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.....+++|+++++.+++...++.|..||..+++ .+. .+.... .....+++++++..|+++..|
T Consensus 141 ~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~----~~~---~~~~~~---~~i~~~~~~~~~~~l~~~~~d------ 204 (337)
T 1gxr_A 141 APACYALAISPDSKVCFSCCSDGNIAVWDLHNQT----LVR---QFQGHT---DGASCIDISNDGTKLWTGGLD------ 204 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----EEE---EECCCS---SCEEEEEECTTSSEEEEEETT------
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc----eee---eeeccc---CceEEEEECCCCCEEEEEecC------
Confidence 3345789999999988888888999999965443 111 221111 356889999844444443222
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
+.|..||.++++....... ......++++++|+.+++....+.|..++.+......+.. .....
T Consensus 205 g~i~~~d~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~----------~~~~v 268 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHDF------TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL----------HESCV 268 (337)
T ss_dssp SEEEEEETTTTEEEEEEEC------SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC----------CSSCE
T ss_pred CcEEEEECCCCceEeeecC------CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcC----------Cccce
Confidence 3699999998877644432 2346789999999877777788899999987654332211 11237
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
..++++|++.++++-..++.|..++...++ ....... . .....+++.++++++++....+.+++.+
T Consensus 269 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~-~~~~~~~-~----~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGA-SIFQSKE-S----SSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEEC-S----SCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred eEEEECCCCCEEEEecCCCcEEEEECCCCe-EEEEecC-C----CcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 899999999777777788999999998874 3322221 1 2367899999998777654445666654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-07 Score=81.82 Aligned_cols=199 Identities=15% Similarity=0.088 Sum_probs=134.0
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
....+++|+++++.+++...++.|..||..+++. ... ....... .....+++++++..++++..| +
T Consensus 98 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----~~~-~~~~~~~---~~i~~~~~~~~~~~l~~~~~d------g 163 (337)
T 1gxr_A 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP----RIK-AELTSSA---PACYALAISPDSKVCFSCCSD------G 163 (337)
T ss_dssp SBEEEEEECTTSSEEEEEESSSEEEEEECCCC------EEE-EEEECSS---SCEEEEEECTTSSEEEEEETT------S
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc----cee-eecccCC---CceEEEEECCCCCEEEEEeCC------C
Confidence 3467899999999888888889999998644431 010 1111111 246789999744445543222 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE-EEEecCCcccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~~~~~~~~~p 207 (335)
.|..||.++++....... . ......++++++|+.+++....+.|..+|..... ...+. . ....
T Consensus 164 ~v~~~d~~~~~~~~~~~~--~---~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~--------~~~v 227 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQG--H---TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD---F--------TSQI 227 (337)
T ss_dssp CEEEEETTTTEEEEEECC--C---SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---C--------SSCE
T ss_pred cEEEEeCCCCceeeeeec--c---cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec---C--------CCce
Confidence 599999998876643322 1 3456789999999888887888999999987543 32221 1 1236
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
..++++|++.++++...++.|..++.... ....+... ......+++.++++++++....+.+++.+...+
T Consensus 228 ~~~~~s~~~~~l~~~~~~~~i~~~~~~~~--~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 297 (337)
T 1gxr_A 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKP--DKYQLHLH----ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTSS--CEEEECCC----SSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCC--CeEEEcCC----ccceeEEEECCCCCEEEEecCCCcEEEEECCCC
Confidence 78999999966666667889999999887 33333221 134678999999987777554577888887655
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-08 Score=101.26 Aligned_cols=239 Identities=12% Similarity=0.119 Sum_probs=143.7
Q ss_pred eeeeEEcCCCC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 51 CETAKWDDVGR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 51 pegia~d~~g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
..+++.|++|+ +|+ +...+.|+++|+.+++ +.. +.. .+.........|..|+ +|+||+++. .
T Consensus 408 v~~i~~d~~g~~lWi-gt~~~Gl~~~d~~~~~-----~~~--~~~~~~~l~~~~v~~i~~d~-~g~lwigt~-------~ 471 (795)
T 4a2l_A 408 IKAVYVDEKKSLVYI-GTHAGGLSILHRNSGQ-----VEN--FNQRNSQLVNENVYAILPDG-EGNLWLGTL-------S 471 (795)
T ss_dssp EEEEEEETTTTEEEE-EETTTEEEEEETTTCC-----EEE--ECTTTSCCSCSCEEEEEECS-SSCEEEEES-------S
T ss_pred EEEEEEcCCCCEEEE-EeCcCceeEEeCCCCc-----EEE--eecCCCCcCCCeeEEEEECC-CCCEEEEec-------C
Confidence 45778899998 555 4456789999965444 221 211 1122234567888885 899999643 2
Q ss_pred eEEEEECCCCeEEEEeecCCC-ccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGK-SEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~-~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
.|.+||+++++.........+ .........+..|++|++|++.. +.|+++++++.... +... ...+. ......
T Consensus 472 Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~~-~~~~-~~~~~--l~~~~i 545 (795)
T 4a2l_A 472 ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDIQ-KASI-LPVSN--VTKLFT 545 (795)
T ss_dssp CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEEE-ECCC-SCSCG--GGGSCE
T ss_pred ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeEE-EecC-CCCCC--CCCCee
Confidence 399999998866532111000 11124567889999999999876 57999998765442 2110 00000 011236
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEE
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETA 287 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~ 287 (335)
++|+.+++|+||++... -|+++|+... ..+.+....+-.-....++..|++|+||++.. +++..++...+ +.
T Consensus 546 ~~i~~d~~g~lWigT~~--Gl~~~d~~~~--~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~--~Gl~~~~~~~~-~~- 617 (795)
T 4a2l_A 546 NCIYEASNGIIWVGTRE--GFYCFNEKDK--QIKRYNTTNGLPNNVVYGILEDSFGRLWLSTN--RGISCFNPETE-KF- 617 (795)
T ss_dssp EEEEECTTSCEEEEESS--CEEEEETTTT--EEEEECGGGTCSCSCEEEEEECTTSCEEEEET--TEEEEEETTTT-EE-
T ss_pred EEEEECCCCCEEEEeCC--CceeECCCCC--cEEEeCCCCCCchhheEEEEECCCCCEEEEcC--CceEEEcCCCC-cE-
Confidence 78999999999998764 5999999876 55555432111112245688899999999986 66777775443 11
Q ss_pred EEeeeec-CCCCCc-ceEEEEe-CCeEEEEeccCC
Q 039428 288 SVVAKFN-GPTHRV-ATAATVK-DGRVYLSHLLGL 319 (335)
Q Consensus 288 ~~~~~~~-~p~~~~-Pt~va~~-~g~lyV~~~~~~ 319 (335)
+...... .+...+ ..++..+ +|+||+....|.
T Consensus 618 ~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl 652 (795)
T 4a2l_A 618 RNFTESDGLQSNQFNTASYCRTSVGQMYFGGINGI 652 (795)
T ss_dssp EEECGGGTCSCSCEEEEEEEECTTSCEEEEETTEE
T ss_pred EEcCCcCCCccccCccCceeECCCCeEEEecCCce
Confidence 1111111 121111 1244444 899999665443
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-07 Score=86.41 Aligned_cols=195 Identities=12% Similarity=0.046 Sum_probs=133.1
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
....++|+|+++.++++..++.|..++...++. .. .+.... .....++++| +++++++.. .. +.
T Consensus 124 ~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~----~~---~~~~~~---~~v~~~~~sp-dg~~lasg~-~d----g~ 187 (321)
T 3ow8_A 124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK----EY---SLDTRG---KFILSIAYSP-DGKYLASGA-ID----GI 187 (321)
T ss_dssp CCCCEEECTTSSEEEEECTTSEEEEEETTTCSE----EE---EEECSS---SCEEEEEECT-TSSEEEEEE-TT----SC
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce----eE---EecCCC---ceEEEEEECC-CCCEEEEEc-CC----Ce
Confidence 456799999999888888889999999654441 11 111221 2467899998 565555422 11 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
|..||.++++....... . ....+.++++|+|+++++.+..+.|..+|... +....+.. ......
T Consensus 188 i~iwd~~~~~~~~~~~~--h---~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----------h~~~v~ 252 (321)
T 3ow8_A 188 INIFDIATGKLLHTLEG--H---AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG----------HASWVL 252 (321)
T ss_dssp EEEEETTTTEEEEEECC--C---SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC----------CSSCEE
T ss_pred EEEEECCCCcEEEEEcc--c---CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC----------CCCceE
Confidence 99999999877643321 1 34567899999999999888899999999764 33332211 112367
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
.++++|+|..+++-..++.|..+|+..++ ....+. + . -....++++.++|..+++....+.+++.+.
T Consensus 253 ~~~~sp~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~--~-h-~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSSDKSVKVWDVGTRT-CVHTFF--D-H-QDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEEC--C-C-SSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCE-EEEEEc--C-C-CCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 89999999777777788999999998763 344443 2 1 133678999999987777554466777653
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.9e-08 Score=88.63 Aligned_cols=175 Identities=12% Similarity=0.064 Sum_probs=118.0
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
...++.+++|++|+.+ .++.|+.+|+. ++. ... . ..+. .....+.+|+ +++||+++ + .|
T Consensus 139 ~~~~~~~~~g~l~vgt-~~~~l~~~d~~-g~~----~~~--~-~~~~---~~~~~~~~d~-~g~l~v~t----~----~l 197 (330)
T 3hxj_A 139 YATPIVSEDGTIYVGS-NDNYLYAINPD-GTE----KWR--F-KTND---AITSAASIGK-DGTIYFGS----D----KV 197 (330)
T ss_dssp CSCCEECTTSCEEEEC-TTSEEEEECTT-SCE----EEE--E-ECSS---CCCSCCEECT-TCCEEEES----S----SE
T ss_pred eeeeEEcCCCEEEEEc-CCCEEEEECCC-CCE----eEE--E-ecCC---CceeeeEEcC-CCEEEEEe----C----EE
Confidence 4567888888866544 56899999864 541 111 1 1111 2456778885 89999953 1 39
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeE
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
+++| .+++..+..... ......+++|++|++|++.. .+.|++++++|+....+... ...+..+
T Consensus 198 ~~~d-~~g~~~~~~~~~-----~~~~~~~~~~~~g~l~v~t~-~~gl~~~~~~g~~~~~~~~~----------~~~~~~~ 260 (330)
T 3hxj_A 198 YAIN-PDGTEKWNFYAG-----YWTVTRPAISEDGTIYVTSL-DGHLYAINPDGTEKWRFKTG----------KRIESSP 260 (330)
T ss_dssp EEEC-TTSCEEEEECCS-----SCCCSCCEECTTSCEEEEET-TTEEEEECTTSCEEEEEECS----------SCCCSCC
T ss_pred EEEC-CCCcEEEEEccC-----CcceeceEECCCCeEEEEcC-CCeEEEECCCCCEeEEeeCC----------CCccccc
Confidence 9999 556555444331 34577899999999999854 57899999988766532211 1124567
Q ss_pred EEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 211 VYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 211 a~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
+++++|+||++.. ++.|+++|.++. ....+...+ .....+..|.+|+||++..
T Consensus 261 ~~~~~g~l~v~t~-~ggl~~~d~~g~--~~~~~~~~~----~~~~~~~~d~~g~l~~gt~ 313 (330)
T 3hxj_A 261 VIGNTDTIYFGSY-DGHLYAINPDGT--EKWNFETGS----WIIATPVIDENGTIYFGTR 313 (330)
T ss_dssp EECTTSCEEEECT-TCEEEEECTTSC--EEEEEECSS----CCCSCCEECTTCCEEEECT
T ss_pred eEcCCCeEEEecC-CCCEEEECCCCc--EEEEEEcCC----ccccceEEcCCCEEEEEcC
Confidence 8888899999864 567999998554 445555433 2356788899999999966
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.08 E-value=5e-07 Score=81.86 Aligned_cols=218 Identities=12% Similarity=0.082 Sum_probs=139.4
Q ss_pred eeEEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEE
Q 039428 40 HVYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAF 119 (335)
Q Consensus 40 ~~~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~ 119 (335)
..+.+.+......+++|+++|+.++++..++.|..||..+++. +. .+.... .....+++++ +++.+++.
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~---~~~~h~---~~v~~~~~~~-~~~~l~s~ 92 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER----LG---TLDGHT---GTIWSIDVDC-FTKYCVTG 92 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE----EE---EECCCS---SCEEEEEECT-TSSEEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh----hh---hhhhcC---CcEEEEEEcC-CCCEEEEE
Confidence 4455666555678999999999888888889999999654541 11 222111 3567899997 55554432
Q ss_pred ecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC-----CeEEEEccCCcE----EEEe
Q 039428 120 TDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS-----SKIWKVGVEGQL----LSII 190 (335)
Q Consensus 120 ~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~-----~~I~~~d~~g~~----~~~~ 190 (335)
... +.|..||.++++....... ......++++++|+.+++.... +.|..++..... ....
T Consensus 93 ~~d-----g~i~iwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 93 SAD-----YSIKLWDVSNGQCVATWKS------PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp ETT-----TEEEEEETTTCCEEEEEEC------SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred eCC-----CeEEEEECCCCcEEEEeec------CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence 221 3699999998877644432 3456789999999877776665 888888865221 1100
Q ss_pred cCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 191 RSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 191 ~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
.......-...........++++|++..+++-..++.|..+|+.........+.... .....+++.+++.++++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 162 SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE----KSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp CSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS----SCEEEEEECTTSSEEEEEE
T ss_pred ccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC----CceeEEEECCCCCEEEEec
Confidence 000000000001112578899999996666666789999999987321444444222 2367899999998777755
Q ss_pred CCCeEEEEEcCCC
Q 039428 271 PYPSARLVESSDG 283 (335)
Q Consensus 271 ~~~~~~v~~~~~~ 283 (335)
..+.+++.+...+
T Consensus 238 ~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 238 RDTNSFLVDVSTL 250 (369)
T ss_dssp TTSEEEEEETTTC
T ss_pred CCceEEEEECCCC
Confidence 4577888887654
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.6e-08 Score=94.48 Aligned_cols=255 Identities=13% Similarity=0.113 Sum_probs=138.9
Q ss_pred cceeeeEEcCCCC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC--------CCCcceEEEeCC---CCeEE
Q 039428 49 FLCETAKWDDVGR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV--------GNATMGIAVDRP---RNRLL 116 (335)
Q Consensus 49 ~~pegia~d~~g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~--------~~~p~Gi~~d~~---~g~l~ 116 (335)
..|.++++.|+|. ++|++...++|++++. ++.. ..+ ++...+... ...+.||+++|+ ++.||
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~-~g~~----~~~-~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lY 87 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTP-EGEI----FKE-PYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLY 87 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECT-TSCB----CSS-CSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeC-CCCe----eee-eecCCcceeccCccccCCCcceeeEeCCCCcCCCEEE
Confidence 4799999999996 4555556799999974 4431 000 111111110 135789999974 58999
Q ss_pred EEEecCCC-------CccceEEEEECCCC----------eEEEEeecCCCccCCCCCCceeECCCCcEEEEeC-------
Q 039428 117 VAFTDVLG-------NKYSALAAYDLSTW----------KRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV------- 172 (335)
Q Consensus 117 v~~~D~~~-------~~~~~v~~~d~~~~----------~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~------- 172 (335)
|+.+.... ...++|.+|..+.+ ++++... .. ...+....|+++|||+|||+-.
T Consensus 88 v~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~--~~-~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~ 164 (463)
T 2wg3_C 88 VSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVA--EL-HRKHLGGQLLFGPDGFLYIILGDGMITLD 164 (463)
T ss_dssp EEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEE--ES-SSSSCEEEEEECTTSCEEEEECCTTCCHH
T ss_pred EEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcC--CC-CCcccCCcEeECCCCcEEEEeCCCCCCCC
Confidence 97542211 01146888876421 2333222 11 1245667899999999999832
Q ss_pred ----------CCCeEEEEccCCcE-----EEEecCCcccc----cc-ccccccccCeEEEccC-----C--eEEEEEC-C
Q 039428 173 ----------VSSKIWKVGVEGQL-----LSIIRSPLFTA----KE-WYKNVFGLNGIVYHPD-----G--FLIVIHM-C 224 (335)
Q Consensus 173 ----------~~~~I~~~d~~g~~-----~~~~~~~~~~~----~~-~~~~~~~p~Gia~~~d-----g--~Lyvad~-~ 224 (335)
..+.|+|++++|+. ..--+++.... ++ ....+.+|.|++|+|+ | ++|.+|. +
T Consensus 165 ~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G 244 (463)
T 2wg3_C 165 DMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNG 244 (463)
T ss_dssp HHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC--
T ss_pred ccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCC
Confidence 24789999999841 00001111000 11 2335568999999997 5 6787885 2
Q ss_pred ----CCEEEEEeCCCCce---eEEEEeccCCcCCCCCCeEEEcC-------CCcEEEEecCCCeEEEEEcCCC---cEEE
Q 039428 225 ----SGNLFKIDIRKEEE---EVKLIELRGGSSLSLGDGLALLS-------PTKLVVAGNPYPSARLVESSDG---WETA 287 (335)
Q Consensus 225 ----~~~v~~~d~~~~~~---~~~~~~~~g~~~~~~pdGia~d~-------~g~l~va~~~~~~~~v~~~~~~---~~~~ 287 (335)
..+|.++...+.-+ .+..+.... -..|.|+++-. .|.+++++.. +.++.+....+ |...
T Consensus 245 ~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~---g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~~~~~~~~~~~~ 320 (463)
T 2wg3_C 245 KNRSSARILQIIKGKDYESEPSLLEFKPFS---NGPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQSPVTKQWQEK 320 (463)
T ss_dssp ----CEEEEEEC----CCSCCCCEECCC-------CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEEC-----CCEEE
T ss_pred CCCCCCeEeeeccCCCCCCCCCeEEeeCCC---CccccceEEEeCCCChhhcceEEEecCC-CcEEEEEeCCCCceeeEE
Confidence 23455553322100 111121100 02477888853 2568888774 55666655433 3322
Q ss_pred EEe-eee---cCCCCCcceEEEEe-CCeEEEEec
Q 039428 288 SVV-AKF---NGPTHRVATAATVK-DGRVYLSHL 316 (335)
Q Consensus 288 ~~~-~~~---~~p~~~~Pt~va~~-~g~lyV~~~ 316 (335)
.+. +.. ..+....|.+++++ +|.|||++.
T Consensus 321 ~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 321 PLCLGTSGSCRGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp EECEEETTSSCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred EeecCCcccccccccCcceEEEECCCCCEEEEec
Confidence 221 111 01223457888886 899999765
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.07 E-value=4e-08 Score=90.98 Aligned_cols=204 Identities=9% Similarity=0.065 Sum_probs=130.4
Q ss_pred ceeeeEEcCCCCEEEEE--ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 50 LCETAKWDDVGRRFLVS--FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~--~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
+...++|+|+|+++++. ..++.|..||..+++. +. .+... .....++++| +|.++++..+
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~----~~---~~~~~----~~V~~v~fsp-dg~~l~s~s~------ 196 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE----KF---EIETR----GEVKDLHFST-DGKVVAYITG------ 196 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE----EE---EEECS----SCCCEEEECT-TSSEEEEECS------
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE----EE---EeCCC----CceEEEEEcc-CCceEEeccc------
Confidence 45689999999987665 4578999999754441 11 22221 2467999998 6766665333
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCC----eEEEEccCCcEEEEecCCcccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSS----KIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~----~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
..+.+++..+++......... . ....+.+++.|+|+.+++-+..+ .++.++.............+.. .
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~--~-~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~ 268 (365)
T 4h5i_A 197 SSLEVISTVTGSCIARKTDFD--K-NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-----R 268 (365)
T ss_dssp SCEEEEETTTCCEEEEECCCC--T-TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES-----S
T ss_pred eeEEEEEeccCcceeeeecCC--C-CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC-----C
Confidence 247888887776543222211 1 23457799999998776644332 5666665433222110001110 1
Q ss_pred ccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 204 VFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 204 ~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
....+.++++|||.++++-+.++.|..+|....+ .+..+. .+ + -.....+++.|+|+++++....+.++|.+.+.+
T Consensus 269 ~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~-~~~~~~-~g-H-~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 269 FKGITSMDVDMKGELAVLASNDNSIALVKLKDLS-MSKIFK-QA-H-SFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE-EEEEET-TS-S-SSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc-EEEEec-Cc-c-cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 2236789999999888887788999999998873 333332 22 2 233689999999998888766688999987654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-07 Score=90.56 Aligned_cols=222 Identities=13% Similarity=0.144 Sum_probs=145.0
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.....+++++|+|+.+++...++.|..++. +++ .+. .+.... ....++++++ +++.+++..+.
T Consensus 344 ~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~----~~~---~~~~~~---~~v~~~~~s~-dg~~l~~~~~d----- 406 (577)
T 2ymu_A 344 SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQ----LLQ---TLTGHS---SSVRGVAFSP-DGQTIASASDD----- 406 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEET-TCC----EEE---EEECCS---SCEEEEEECT-TSSCEEEEETT-----
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCC----EEE---EecCCC---CCeEEEEECC-CCCEEEEEeCC-----
Confidence 334578999999998887788899999984 454 122 222221 2567899997 55554432221
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
..|..||..+. ....... . ......+++.|+++.+++.+..+.|..++.+++....+.. .....
T Consensus 407 ~~v~~~~~~~~-~~~~~~~--~---~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~----------~~~~v 470 (577)
T 2ymu_A 407 KTVKLWNRNGQ-LLQTLTG--H---SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTG----------HSSSV 470 (577)
T ss_dssp SEEEEECTTCC-EEEEEEC--C---SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEEC----------CSSCE
T ss_pred CEEEEEeCCCC-EEEEecC--C---CCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcC----------CCCCE
Confidence 35889996544 3322211 1 2345689999999988888888999999998876654321 11236
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEE
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETA 287 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~ 287 (335)
..++++|||.++++-..++.|..++.++. ..+.+.... .....+++.++|+++++....+.+++.+.. +
T Consensus 471 ~~~~~spd~~~las~~~d~~i~iw~~~~~--~~~~~~~h~----~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~---- 539 (577)
T 2ymu_A 471 RGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHS----SSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---- 539 (577)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSC--EEEEEECCS----SCEEEEEECTTSSCEEEEETTSEEEEECTT-S----
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEcCCCC--EEEEEeCCC----CCEEEEEEcCCCCEEEEEECcCEEEEEeCC-C----
Confidence 78999999987777778899999997765 555554322 236789999999877765544678887753 3
Q ss_pred EEeeeecCCCCCcceEEEEe-CCeEEEE
Q 039428 288 SVVAKFNGPTHRVATAATVK-DGRVYLS 314 (335)
Q Consensus 288 ~~~~~~~~p~~~~Pt~va~~-~g~lyV~ 314 (335)
+....+.+.. ...+++++. +|+..++
T Consensus 540 ~~~~~~~~h~-~~v~~~~fs~dg~~l~s 566 (577)
T 2ymu_A 540 QLLQTLTGHS-SSVWGVAFSPDGQTIAS 566 (577)
T ss_dssp CEEEEEECCS-SCEEEEEECTTSSCEEE
T ss_pred CEEEEEcCCC-CCEEEEEEcCCCCEEEE
Confidence 2233333221 224678885 6665554
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=9.7e-08 Score=97.47 Aligned_cols=236 Identities=12% Similarity=0.066 Sum_probs=142.9
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecC-----CcCCCCcceEEEeCCCCe-EEEEEecCCC
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKED-----DVVGNATMGIAVDRPRNR-LLVAFTDVLG 124 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~-----~~~~~~p~Gi~~d~~~g~-l~v~~~D~~~ 124 (335)
..+++.|++|++|+.+ ..+.|.++++.++. +.. +...+ .+..+....|..|+ +|+ ||+++.+
T Consensus 359 V~~i~~d~~g~lWiGt-~~~Gl~~~~~~~~~-----~~~--~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~--- 426 (795)
T 4a2l_A 359 VSCIVEDKDKNLWIGT-NDGGLNLYNPITQR-----FTS--YTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHA--- 426 (795)
T ss_dssp EEEEEECTTSCEEEEE-SSSCEEEECTTTCC-----EEE--ECCC------CCSCSCEEEEEEET-TTTEEEEEETT---
T ss_pred eEEEEECCCCCEEEEE-CCCCeEEEcCCCCc-----EEE--EecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCc---
Confidence 4578889999887655 45679999854343 221 21111 12234567899995 788 9996422
Q ss_pred CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 125 NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 125 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
..|.++|+++++....... .+.........+..|++|++|++.. +.|++++++++....+... ..+. ....
T Consensus 427 ---~Gl~~~d~~~~~~~~~~~~-~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~--~~~~-~~~~ 497 (795)
T 4a2l_A 427 ---GGLSILHRNSGQVENFNQR-NSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKE--KDGT-PVVS 497 (795)
T ss_dssp ---TEEEEEETTTCCEEEECTT-TSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBC--TTCC-BCCC
T ss_pred ---CceeEEeCCCCcEEEeecC-CCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEcccc--cccc-ccCC
Confidence 3599999998876532211 1111134567889999999999865 5699999986554432211 0000 0001
Q ss_pred cccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEec---cCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 205 FGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIEL---RGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~---~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.....|+.+++|+||++.. +-|++++.++. .. .+.. ...........+..|++|++|++.. +++..++..
T Consensus 498 ~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~--~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--~Gl~~~d~~ 570 (795)
T 4a2l_A 498 KQITTLFRDSHKRLWIGGE--EGLSVFKQEGL--DI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR--EGFYCFNEK 570 (795)
T ss_dssp CCEEEEEECTTCCEEEEES--SCEEEEEEETT--EE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES--SCEEEEETT
T ss_pred ceEEEEEECCCCCEEEEeC--CceEEEeCCCC--eE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC--CCceeECCC
Confidence 2367889999999999987 45999998876 33 3321 0001012356788899999999976 457777654
Q ss_pred CCcEEEEEeeeec-CCCCCcceEEEEe-CCeEEEEecc
Q 039428 282 DGWETASVVAKFN-GPTHRVATAATVK-DGRVYLSHLL 317 (335)
Q Consensus 282 ~~~~~~~~~~~~~-~p~~~~Pt~va~~-~g~lyV~~~~ 317 (335)
.+ +. +...... .| .....++..+ +|+||++...
T Consensus 571 ~~-~~-~~~~~~~gl~-~~~i~~i~~d~~g~lWi~t~~ 605 (795)
T 4a2l_A 571 DK-QI-KRYNTTNGLP-NNVVYGILEDSFGRLWLSTNR 605 (795)
T ss_dssp TT-EE-EEECGGGTCS-CSCEEEEEECTTSCEEEEETT
T ss_pred CC-cE-EEeCCCCCCc-hhheEEEEECCCCCEEEEcCC
Confidence 43 11 1111111 12 2223456666 7999997643
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.5e-08 Score=101.69 Aligned_cols=236 Identities=11% Similarity=0.062 Sum_probs=141.1
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
..+++.|++|++|+.+ ..+.|+++++.++. ... +........+....|..|+ +|+||+.+.+ ..|
T Consensus 365 v~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~-----~~~--~~~~~~~~~~~v~~i~~d~-~g~lWigt~~------~Gl 429 (781)
T 3v9f_A 365 VSSVCDDGQGKLWIGT-DGGGINVFENGKRV-----AIY--NKENRELLSNSVLCSLKDS-EGNLWFGTYL------GNI 429 (781)
T ss_dssp EEEEEECTTSCEEEEE-BSSCEEEEETTEEE-----EEC--C-----CCCSBEEEEEECT-TSCEEEEETT------EEE
T ss_pred eEEEEEcCCCCEEEEe-CCCcEEEEECCCCe-----EEE--ccCCCCCCCcceEEEEECC-CCCEEEEecc------CCE
Confidence 4678889999887665 45679999853222 111 1111122224567888885 8999996421 359
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeE
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
.++|+++++..... .. .........+..|++|++|++.. +.|+++++++.....+.... .. .........|
T Consensus 430 ~~~~~~~~~~~~~~-~~--~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~-~~---~~~~~~i~~i 500 (781)
T 3v9f_A 430 SYYNTRLKKFQIIE-LE--KNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLASKKVIHHYDTS-NS---QLLENFVRSI 500 (781)
T ss_dssp EEECSSSCEEEECC-ST--TTCCCCEEEEEECTTSEEEEEET--TEEEEEESSSSSCCEEECTT-TS---SCSCSCEEEE
T ss_pred EEEcCCCCcEEEec-cC--CCCCCeEEEEEECCCCCEEEEEC--CceEEEeCCCCeEEecccCc-cc---ccccceeEEE
Confidence 99999888665321 10 11134567889999999999865 67999998754322111100 00 0011346789
Q ss_pred EEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeE-EEEEcCCCcEEEEE
Q 039428 211 VYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSA-RLVESSDGWETASV 289 (335)
Q Consensus 211 a~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~-~v~~~~~~~~~~~~ 289 (335)
+.+++|+||++....+ |++++++.+ ..+.+.....-.......+..|++|++|++.. +++ ..++...+ +. +.
T Consensus 501 ~~d~~g~lWigt~~~G-l~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~--~Glv~~~d~~~~-~~-~~ 573 (781)
T 3v9f_A 501 AQDSEGRFWIGTFGGG-VGIYTPDMQ--LVRKFNQYEGFCSNTINQIYRSSKGQMWLATG--EGLVCFPSARNF-DY-QV 573 (781)
T ss_dssp EECTTCCEEEEESSSC-EEEECTTCC--EEEEECTTTTCSCSCEEEEEECTTSCEEEEET--TEEEEESCTTTC-CC-EE
T ss_pred EEcCCCCEEEEEcCCC-EEEEeCCCC--eEEEccCCCCCCCCeeEEEEECCCCCEEEEEC--CCceEEECCCCC-cE-EE
Confidence 9999999999987555 999999876 55555432111112345788899999999976 555 54443332 11 11
Q ss_pred eeeec-CCCCCcceEEEEe-CCeEEEEeccC
Q 039428 290 VAKFN-GPTHRVATAATVK-DGRVYLSHLLG 318 (335)
Q Consensus 290 ~~~~~-~p~~~~Pt~va~~-~g~lyV~~~~~ 318 (335)
...-. .|. ....+++.+ +|+||++...|
T Consensus 574 ~~~~~gl~~-~~i~~i~~d~~g~lW~~t~~G 603 (781)
T 3v9f_A 574 FQRKEGLPN-THIRAISEDKNGNIWASTNTG 603 (781)
T ss_dssp ECGGGTCSC-CCCCEEEECSSSCEEEECSSC
T ss_pred ccccCCCCC-ceEEEEEECCCCCEEEEcCCc
Confidence 11111 121 223467666 89999976433
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.03 E-value=5.1e-07 Score=80.83 Aligned_cols=208 Identities=15% Similarity=0.086 Sum_probs=139.2
Q ss_pred eEEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEe
Q 039428 41 VYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFT 120 (335)
Q Consensus 41 ~~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~ 120 (335)
...+.+......+++|+++|+.++++..++.|..|+..+++. .. .+.... .....+++++ +++++++..
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~----~~---~~~~h~---~~v~~~~~~~-~~~~l~s~~ 84 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EK---TISGHK---LGISDVAWSS-DSNLLVSAS 84 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----EE---EECCCS---SCEEEEEECT-TSSEEEEEE
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc----ch---hhccCC---CceEEEEEcC-CCCEEEEEC
Confidence 344444444568999999999888878899999998655541 11 222111 2467899998 555555422
Q ss_pred cCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCcccccc
Q 039428 121 DVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKE 199 (335)
Q Consensus 121 D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~ 199 (335)
.. ..|..||.++++....... . ......+++.++++.+++.+..+.|..+|... +....+..
T Consensus 85 ~d-----~~i~vwd~~~~~~~~~~~~----~-~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~------- 147 (312)
T 4ery_A 85 DD-----KTLKIWDVSSGKCLKTLKG----H-SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA------- 147 (312)
T ss_dssp TT-----SEEEEEETTTCCEEEEEEC----C-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC-------
T ss_pred CC-----CEEEEEECCCCcEEEEEcC----C-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC-------
Confidence 21 3599999998876543322 1 24556789999999888888889999999864 44332211
Q ss_pred ccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 200 WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
.......+++++++.++++-..++.|..+|....+ ....+.... ......++++++++++++....+.+++.+
T Consensus 148 ---~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 220 (312)
T 4ery_A 148 ---HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDD---NPPVSFVKFSPNGKYILAATLDNTLKLWD 220 (312)
T ss_dssp ---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCSS---CCCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred ---CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeEEeccC---CCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 11236789999999777777788899999998764 333332211 12245688999998777755457788888
Q ss_pred cCCC
Q 039428 280 SSDG 283 (335)
Q Consensus 280 ~~~~ 283 (335)
...+
T Consensus 221 ~~~~ 224 (312)
T 4ery_A 221 YSKG 224 (312)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 7654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.02 E-value=3.3e-07 Score=83.54 Aligned_cols=202 Identities=11% Similarity=0.028 Sum_probs=129.0
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
..+++|++++++++++..++.|..||..+++ .+....+.... .....+++++ +++++++.. .. ..|
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-----~~~~~~~~~h~---~~v~~~~~~~-~~~~l~~~~-~d----g~i 76 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHN---GQVTGVDWAP-DSNRIVTCG-TD----RNA 76 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTE-----EEEEEEEECCS---SCEEEEEEET-TTTEEEEEE-TT----SCE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-----EEeeeeecCCC---CcccEEEEeC-CCCEEEEEc-CC----CeE
Confidence 4689999999988888778999999864332 11111222111 3568999998 555544322 11 359
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE----EEEecCCccccccccccccc
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL----LSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~----~~~~~~~~~~~~~~~~~~~~ 206 (335)
..||.++++.......... ......++++++|+.+++....+.|..++.+... ...+.. +....
T Consensus 77 ~vwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~---------~~~~~ 144 (372)
T 1k8k_C 77 YVWTLKGRTWKPTLVILRI---NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK---------PIRST 144 (372)
T ss_dssp EEEEEETTEEEEEEECCCC---SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT---------TCCSC
T ss_pred EEEECCCCeeeeeEEeecC---CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeec---------ccCCC
Confidence 9999988875533332211 3457789999999877777777888887765322 111110 01234
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCC------------------CCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIR------------------KEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~------------------~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
...++++|++.++++-..++.|..+|.. ..+ ....+. + . ......+++.+++.++++
T Consensus 145 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~-~-~~~v~~~~~~~~~~~l~~ 219 (372)
T 1k8k_C 145 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE-LMFESS--S-S-CGWVHGVCFSANGSRVAW 219 (372)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC-EEEECC--C-C-SSCEEEEEECSSSSEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhh-heEecC--C-C-CCeEEEEEECCCCCEEEE
Confidence 7899999999777777778889999964 221 333332 2 1 133678999999977666
Q ss_pred ecCCCeEEEEEcCCC
Q 039428 269 GNPYPSARLVESSDG 283 (335)
Q Consensus 269 ~~~~~~~~v~~~~~~ 283 (335)
....+.+++.+...+
T Consensus 220 ~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 220 VSHDSTVCLADADKK 234 (372)
T ss_dssp EETTTEEEEEEGGGT
T ss_pred EeCCCEEEEEECCCC
Confidence 554577888887654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-06 Score=79.58 Aligned_cols=203 Identities=10% Similarity=0.081 Sum_probs=135.5
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
....++|+|+|+.+++...++.|..|+....... ......+ .+.. .....+.+.+ ++.++.+..| ..
T Consensus 99 ~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~---~~~~~~~--~~h~-~~v~~~~~~~-~~~l~s~s~d------~~ 165 (340)
T 1got_B 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN---VRVSREL--AGHT-GYLSCCRFLD-DNQIVTSSGD------TT 165 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS---CEEEEEE--ECCS-SCEEEEEEEE-TTEEEEEETT------SC
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc---ceeEEEe--cCCC-ccEEEEEECC-CCcEEEEECC------Cc
Confidence 3568899999998888888999999985433210 0100011 1111 2456777775 6776664333 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
|..||.++++....... . ....+.+++.|+|+++++.+..+.|..+|... +....+.. .....+
T Consensus 166 i~~wd~~~~~~~~~~~~--h---~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~----------h~~~v~ 230 (340)
T 1got_B 166 CALWDIETGQQTTTFTG--H---TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG----------HESDIN 230 (340)
T ss_dssp EEEEETTTTEEEEEECC--C---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC----------CSSCEE
T ss_pred EEEEECCCCcEEEEEcC--C---CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC----------CcCCEE
Confidence 99999998876643321 1 34567899999999999988899999999764 33332211 112378
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
.++++|++.++++-..++.|..+|+...+ ....+.... . ......+++.++|.++++....+.+++.+...+
T Consensus 231 ~v~~~p~~~~l~s~s~d~~v~iwd~~~~~-~~~~~~~~~-~-~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 231 AICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDN-I-ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCTT-C-CSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCc-EEEEEccCC-c-ccceEEEEECCCCCEEEEECCCCeEEEEEcccC
Confidence 99999999888888889999999998763 333343221 1 123567899999998888665577888886544
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-07 Score=92.49 Aligned_cols=190 Identities=13% Similarity=0.131 Sum_probs=128.5
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
....+++++++|+.+++...++.|..||. +++. +. .+.... ....+++++| +++++++..+. .
T Consensus 386 ~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~----~~---~~~~~~---~~v~~~~~s~-d~~~l~~~~~d-----~ 448 (577)
T 2ymu_A 386 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQL----LQ---TLTGHS---SSVWGVAFSP-DDQTIASASDD-----K 448 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECT-TCCE----EE---EEECCS---SCEEEEEECT-TSSEEEEEETT-----S
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCE----EE---EecCCC---CCeEEEEECC-CCCEEEEEcCC-----C
Confidence 34678999999998877788899999984 4541 22 222221 2567899998 45554432221 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
.|..||..+..+... .. . ....+.++++|+|++.++....+.|..++.+++....+.. .....+
T Consensus 449 ~v~~w~~~~~~~~~~-~~----~-~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~----------h~~~v~ 512 (577)
T 2ymu_A 449 TVKLWNRNGQLLQTL-TG----H-SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG----------HSSSVR 512 (577)
T ss_dssp EEEEEETTSCEEEEE-EC----C-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEEC----------CSSCEE
T ss_pred EEEEEECCCCEEEEE-cC----C-CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeC----------CCCCEE
Confidence 588999765433322 11 1 3456789999999988888888999999998887664321 112378
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEE
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARL 277 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v 277 (335)
.++++|||.++++-..++.|..+|..+. ....+.... ....++++.++|+++++....+.+++
T Consensus 513 ~l~~s~dg~~l~s~~~dg~v~lwd~~~~--~~~~~~~h~----~~v~~~~fs~dg~~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 513 GVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHS----SSVWGVAFSPDGQTIASASSDKTVKL 575 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECTTSC--EEEEEECCS----SCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred EEEEcCCCCEEEEEECcCEEEEEeCCCC--EEEEEcCCC----CCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 9999999976666667889999997665 555554222 23678999999987777443345554
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.98 E-value=5e-06 Score=74.24 Aligned_cols=230 Identities=14% Similarity=0.104 Sum_probs=140.4
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
......++|+++++.++++..++.|..||..+++ .+. .+.... .....+.+++ ++.++++.. ..
T Consensus 65 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~---~~~~~~---~~v~~~~~~~-~~~~l~s~~-~d---- 128 (312)
T 4ery_A 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK----CLK---TLKGHS---NYVFCCNFNP-QSNLIVSGS-FD---- 128 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----EEE---EEECCS---SCEEEEEECS-SSSEEEEEE-TT----
T ss_pred CCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc----EEE---EEcCCC---CCEEEEEEcC-CCCEEEEEe-CC----
Confidence 3345789999999988888889999999965444 122 222221 2457888997 555555322 11
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
..|..||.++++....... . ......++++++|+++++.+..+.|..+|... +....+... ....
T Consensus 129 ~~i~iwd~~~~~~~~~~~~--~---~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---------~~~~ 194 (312)
T 4ery_A 129 ESVRIWDVKTGKCLKTLPA--H---SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD---------DNPP 194 (312)
T ss_dssp SCEEEEETTTCCEEEEECC--C---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCS---------SCCC
T ss_pred CcEEEEECCCCEEEEEecC--C---CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEecc---------CCCc
Confidence 3599999998876533321 1 23456799999999888888889999999864 333322110 1122
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEE
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWET 286 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~ 286 (335)
...++++|++..+++-..++.|..+|....+ ....+...... .....-....+++.++++....+.+++.+...+
T Consensus 195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--- 269 (312)
T 4ery_A 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGK-CLKTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK--- 269 (312)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTE-EEEEECSSCCS-SSCCCEEEECSSSCEEEECCTTSCEEEEETTTC---
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEEecCCc-eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc---
Confidence 5679999999766677788999999998873 34444321111 111112222345677777655577888887654
Q ss_pred EEEeeeecCCCCCcceEEEEe-CCeEEEE
Q 039428 287 ASVVAKFNGPTHRVATAATVK-DGRVYLS 314 (335)
Q Consensus 287 ~~~~~~~~~p~~~~Pt~va~~-~g~lyV~ 314 (335)
+....+.... ....++++. ++++.++
T Consensus 270 -~~~~~~~~h~-~~v~~~~~~p~~~~l~s 296 (312)
T 4ery_A 270 -EIVQKLQGHT-DVVISTACHPTENIIAS 296 (312)
T ss_dssp -CEEEEECCCS-SCEEEEEECSSSSEEEE
T ss_pred -hhhhhhhccC-CcEEEEeecCcCCceEE
Confidence 2333343221 223456664 5555543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=3e-07 Score=84.55 Aligned_cols=198 Identities=10% Similarity=0.020 Sum_probs=129.6
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-.+++|+++|+++++...++.|..||..+++ .+. .+ .+.. .....+++++++..++++.... +.
T Consensus 129 ~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~----~~~---~~--~~h~-~~V~~~~~~~~~~~~l~s~s~D-----~~ 193 (344)
T 4gqb_B 129 IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV----VLS---SY--RAHA-AQVTCVAASPHKDSVFLSCSED-----NR 193 (344)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTE----EEE---EE--CCCS-SCEEEEEECSSCTTEEEEEETT-----SC
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCCc----EEE---EE--cCcC-CceEEEEecCCCCCceeeeccc-----cc
Confidence 34689999999988888889999999965444 121 22 2211 3567899987555666643321 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccCCc-EEEEecCCcccccccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~p 207 (335)
|..||.++++........ .. ....+.+++.++ ++++++.+..+.|..+|.... .+..+.. .....
T Consensus 194 v~iwd~~~~~~~~~~~~~--~~-~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~----------h~~~v 260 (344)
T 4gqb_B 194 ILLWDTRCPKPASQIGCS--AP-GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV----------HSQCV 260 (344)
T ss_dssp EEEEETTSSSCEEECC-------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC----------CSSCE
T ss_pred cccccccccceeeeeecc--ee-eccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC----------CCCCE
Confidence 999999988665332221 11 345678899985 578888888899999998643 3222211 11236
Q ss_pred CeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcC
Q 039428 208 NGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESS 281 (335)
Q Consensus 208 ~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~ 281 (335)
+.++|+|+| +++++-+.++.|..+|...+ ....+ .+ + -.....+++.|+|. ++++....+.+++...+
T Consensus 261 ~~v~fsp~g~~~lasgs~D~~i~vwd~~~~--~~~~~--~~-H-~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 261 TGLVFSPHSVPFLASLSEDCSLAVLDSSLS--ELFRS--QA-H-RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTCC--EEEEE--CC-C-SSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEEEEccCCCeEEEEEeCCCeEEEEECCCC--cEEEE--cC-C-CCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 899999998 67777778899999999876 33333 23 2 23467899999874 66664434667766654
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-06 Score=80.98 Aligned_cols=202 Identities=10% Similarity=0.091 Sum_probs=132.3
Q ss_pred CCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 46 SPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
+......+++|+|++++++++..++.|..||..+++. .. .+.... .....+++++ ++.++++....
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~----~~---~l~~h~---~~V~~v~~~~-~~~~l~sgs~D--- 171 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF----ER---TLKGHT---DSVQDISFDH-SGKLLASCSAD--- 171 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC----CE---EECCCS---SCEEEEEECT-TSSEEEEEETT---
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE----EE---EEeccC---CcEEEEEEcC-CCCEEEEEeCC---
Confidence 3333457899999999888888899999999755542 11 222221 2567899997 56555542211
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccc
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~ 204 (335)
..|..||..+++.... +.+ . ......+++.|+|+.+++.+..+.|..+|... .....+.. ..
T Consensus 172 --~~i~iwd~~~~~~~~~--~~~--h-~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~----------h~ 234 (410)
T 1vyh_C 172 --MTIKLWDFQGFECIRT--MHG--H-DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG----------HR 234 (410)
T ss_dssp --SCCCEEETTSSCEEEC--CCC--C-SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC----------CS
T ss_pred --CeEEEEeCCCCceeEE--EcC--C-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC----------CC
Confidence 3588999988766532 211 1 34567899999999888888899999999764 33332211 11
Q ss_pred cccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCC--------------------Cc
Q 039428 205 FGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSP--------------------TK 264 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~--------------------g~ 264 (335)
...+.++++++|.++++-..++.|..+|....+ ....+.... .....+++.++ |.
T Consensus 235 ~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-~~~~~~~h~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 309 (410)
T 1vyh_C 235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CKAELREHR----HVVECISWAPESSYSSISEATGSETKKSGKPGP 309 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCS----SCEEEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred ccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-eeeEecCCC----ceEEEEEEcCcccccchhhhccccccccCCCCC
Confidence 236778999999888888888999999988763 333332111 12345555553 55
Q ss_pred EEEEecCCCeEEEEEcCCC
Q 039428 265 LVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 265 l~va~~~~~~~~v~~~~~~ 283 (335)
++++....+.+++.+...+
T Consensus 310 ~l~sgs~D~~i~iwd~~~~ 328 (410)
T 1vyh_C 310 FLLSGSRDKTIKMWDVSTG 328 (410)
T ss_dssp EEEEEETTSEEEEEETTTT
T ss_pred EEEEEeCCCeEEEEECCCC
Confidence 6666555577888887655
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.91 E-value=8.6e-07 Score=81.93 Aligned_cols=200 Identities=5% Similarity=0.011 Sum_probs=122.8
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
...+++|+++++.+++...++.|..|| .++.. +. .+.... .....+++++++..|+++..| ..
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~----~~---~~~~~~---~~v~~~~~~~~~~~l~~~~~d------~~ 172 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGAL----LN---VLNFHR---APIVSVKWNKDGTHIISMDVE------NV 172 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-TTSCE----EE---EECCCC---SCEEEEEECTTSSEEEEEETT------CC
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCe----ee---eccCCC---ccEEEEEECCCCCEEEEEecC------Ce
Confidence 457899999999888888889999998 44541 22 221111 356889999744445553222 34
Q ss_pred EEEEECCCCeEEEEeecCCCc---------------------------------------------------cCCCCCCc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKS---------------------------------------------------EEKSTADD 158 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~---------------------------------------------------~~~~~p~~ 158 (335)
|..||..+++........... ........
T Consensus 173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~ 252 (425)
T 1r5m_A 173 TILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISV 252 (425)
T ss_dssp EEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEE
T ss_pred EEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEE
Confidence 888998877655332221100 00122345
Q ss_pred eeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCc
Q 039428 159 IAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEE 237 (335)
Q Consensus 159 ~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~ 237 (335)
++++++|+.+++....+.|..+|.... ....+. ........++++|++ ++++...++.|..+|+...+
T Consensus 253 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 253 LEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY----------GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT 321 (425)
T ss_dssp EEEETTTTEEEEEETTSCEEEECSSSBSCSEEEC----------CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCccceEec----------CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc
Confidence 666666665555555666666665432 111110 012246889999999 66777788999999998763
Q ss_pred eeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 238 EEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 238 ~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
....+.... .....+++.++++++++....+.+++.+...
T Consensus 322 -~~~~~~~~~----~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 322 -LLALSIVDG----VPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp -EEEEEECTT----CCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred -EeEecccCC----ccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 444444222 2367899999998777755446788887643
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-06 Score=78.67 Aligned_cols=207 Identities=13% Similarity=0.069 Sum_probs=134.1
Q ss_pred EEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEec
Q 039428 42 YQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD 121 (335)
Q Consensus 42 ~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D 121 (335)
..+.+......+++|+++++++++...++.|..||..+++. +. .+.... .....+++++ +++++++..
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~----~~---~~~~~~---~~v~~~~~s~-~~~~l~s~~- 116 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK----VH---AIPLRS---SWVMTCAYAP-SGNYVACGG- 116 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE----EE---EEECSS---SCEEEEEECT-TSSEEEEEE-
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc----ce---EeecCC---ccEEEEEECC-CCCEEEEEe-
Confidence 34444444567999999999888888899999999654441 11 222221 2467889997 565555422
Q ss_pred CCCCccceEEEEECCCCeE--EEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCccccc
Q 039428 122 VLGNKYSALAAYDLSTWKR--LFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAK 198 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~ 198 (335)
.. +.+..||..+++. .....+.+ . ......+.+.+++. +++.+..+.|..+|.... ....+..
T Consensus 117 ~d----~~v~iw~~~~~~~~~~~~~~~~~--h-~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~------ 182 (340)
T 1got_B 117 LD----NICSIYNLKTREGNVRVSRELAG--H-TGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTG------ 182 (340)
T ss_dssp TT----CEEEEEETTTCSBSCEEEEEEEC--C-SSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECC------
T ss_pred CC----CeEEEEECccCCCcceeEEEecC--C-CccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcC------
Confidence 21 3588999876531 11111211 1 23455677777776 455567789999997643 3332211
Q ss_pred cccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEE
Q 039428 199 EWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLV 278 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~ 278 (335)
.......++++|++.++++-..++.|..+|+..++ ....+.... .....+++.++|+++++....+.+++.
T Consensus 183 ----h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-~~~~~~~h~----~~v~~v~~~p~~~~l~s~s~d~~v~iw 253 (340)
T 1got_B 183 ----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHE----SDINAICFFPNGNAFATGSDDATCRLF 253 (340)
T ss_dssp ----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEECCCS----SCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ----CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-eEEEEcCCc----CCEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 11236789999999888888889999999998764 444443221 236789999999888886655778888
Q ss_pred EcCCC
Q 039428 279 ESSDG 283 (335)
Q Consensus 279 ~~~~~ 283 (335)
+...+
T Consensus 254 d~~~~ 258 (340)
T 1got_B 254 DLRAD 258 (340)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 87654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-06 Score=80.30 Aligned_cols=209 Identities=10% Similarity=0.052 Sum_probs=139.5
Q ss_pred EcCCCcceeeeEEcCCC-CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 44 YHSPSFLCETAKWDDVG-RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 44 ~~~~~~~pegia~d~~g-~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
+.+......+++|++++ ++++++..++.|..||..++.. .. .+...+. ......+++++.+++++++.. .
T Consensus 69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~---~~~~~~h-~~~v~~~~~~~~~~~~l~s~~-~ 139 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK----TS---FIQGMGP-GDAITGMKFNQFNTNQLFVSS-I 139 (383)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC----EE---EECCCST-TCBEEEEEEETTEEEEEEEEE-T
T ss_pred ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc----ce---eeecCCc-CCceeEEEeCCCCCCEEEEEe-C
Confidence 33434456899999999 7777778899999999654441 11 2221111 135689999973445544322 2
Q ss_pred CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccc
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~ 202 (335)
. ..|..||.++.......... ........+++.++|+.+++....+.|..+|.+++....+..
T Consensus 140 d----~~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------- 202 (383)
T 3ei3_B 140 R----GATTLRDFSGSVIQVFAKTD---SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKL---------- 202 (383)
T ss_dssp T----TEEEEEETTSCEEEEEECCC---CSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEEC----------
T ss_pred C----CEEEEEECCCCceEEEeccC---CCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEecc----------
Confidence 1 36999999876554322211 112456789999999988888888999999998776654321
Q ss_pred cccccCeEEEccCCe-EEEEECCCCEEEEEeCCCCc---eeEEEEeccCCcCCCCCCeEEEcC-CCcEEEEecCCCeEEE
Q 039428 203 NVFGLNGIVYHPDGF-LIVIHMCSGNLFKIDIRKEE---EEVKLIELRGGSSLSLGDGLALLS-PTKLVVAGNPYPSARL 277 (335)
Q Consensus 203 ~~~~p~Gia~~~dg~-Lyvad~~~~~v~~~d~~~~~---~~~~~~~~~g~~~~~~pdGia~d~-~g~l~va~~~~~~~~v 277 (335)
.......++++|++. ++++-..++.|..+|+...+ .....+.. ......+++.+ +|.++++....+.+++
T Consensus 203 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~l~~~~~d~~i~i 277 (383)
T 3ei3_B 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPH-----EKPVNAAYFNPTDSTKLLTTDQRNEIRV 277 (383)
T ss_dssp SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEEC-----SSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecC-----CCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence 112378999999995 88888889999999998621 13333331 13367899999 8887777554577888
Q ss_pred EEcCCC
Q 039428 278 VESSDG 283 (335)
Q Consensus 278 ~~~~~~ 283 (335)
.+...+
T Consensus 278 wd~~~~ 283 (383)
T 3ei3_B 278 YSSYDW 283 (383)
T ss_dssp EETTBT
T ss_pred EECCCC
Confidence 887544
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-06 Score=80.98 Aligned_cols=212 Identities=14% Similarity=0.061 Sum_probs=134.7
Q ss_pred ceeeeEEcC-CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDD-VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~-~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
...+++|++ ++++++++..++.|..||..++.......+....+.... .....+++++++.+++++.. .. +
T Consensus 83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~~-~d----g 154 (402)
T 2aq5_A 83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT---KRVGIVAWHPTAQNVLLSAG-CD----N 154 (402)
T ss_dssp CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS---SCEEEEEECSSBTTEEEEEE-TT----S
T ss_pred CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC---CeEEEEEECcCCCCEEEEEc-CC----C
Confidence 357899999 888888888899999999655421000000001111111 35688999984334555422 21 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCcccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~p 207 (335)
.|..||.++++......... . ......++++++|+.+++.+..+.|..+|.... ....+... . ....+
T Consensus 155 ~i~iwd~~~~~~~~~~~~~~--~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~-------~~~~~ 223 (402)
T 2aq5_A 155 VILVWDVGTGAAVLTLGPDV--H-PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP-H-------EGTRP 223 (402)
T ss_dssp CEEEEETTTTEEEEEECTTT--C-CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECS-S-------CSSSC
T ss_pred EEEEEECCCCCccEEEecCC--C-CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccC-C-------CCCcc
Confidence 59999999887764432111 1 345678999999988887788899999998744 33322110 0 11236
Q ss_pred CeEEEccCCeEEEEE---CCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcCCC
Q 039428 208 NGIVYHPDGFLIVIH---MCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad---~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~~~ 283 (335)
..++++++|.++++. ..+++|..+|....+.......... ......+++++++. +++++...+.+++.+...+
T Consensus 224 ~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 224 VHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT---SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp CEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC---CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred eEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC---CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 889999999777666 6788999999987531223333222 13467899999986 4456654577888887654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-07 Score=89.31 Aligned_cols=205 Identities=9% Similarity=0.043 Sum_probs=131.2
Q ss_pred eeeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 51 CETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 51 pegia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
-.+++|+|. ++++.++..+|.|..||...+.. . ..+...+.. .....|+++|.+++++++.+ . + +.
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-----~--~~~~~~gH~-~~V~~l~f~p~~~~~l~s~s-~--D--~~ 188 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-----P--TFIKGIGAG-GSITGLKFNPLNTNQFYASS-M--E--GT 188 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-----C--EEECCCSSS-CCCCEEEECSSCTTEEEEEC-S--S--SC
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-----e--eEEEccCCC-CCEEEEEEeCCCCCEEEEEe-C--C--CE
Confidence 568999985 56666668899999998644431 1 122222211 35689999975555555322 1 1 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
|..||.+++......... ........++++++|+++++....+.|..+|.+++.... +.. .....+.
T Consensus 189 v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~-----~~~-----h~~~v~~ 255 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSD---TINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWN-----LRM-----HKKKVTH 255 (435)
T ss_dssp EEEEETTSCEEEEEECCS---SCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCC-----SBC-----CSSCEEE
T ss_pred EEEeeccCCceeEEeccC---CCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEE-----Eec-----ccceEEe
Confidence 999999887655332221 112345678999999999988889999999998765431 111 1123688
Q ss_pred EEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 210 IVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 210 ia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
++++|++ +++++-..++.|..+|+...+.........+ . -.....+++.++|.++++....+.+++.+...+
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~-h-~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-H-RHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCB-C-SSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred eeecCCCceEEEEecCcceeeEEecccccccceEEEeee-c-cccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 9999988 6787777888888888876421111111111 1 122467888899987777554577888876544
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.5e-06 Score=84.23 Aligned_cols=206 Identities=13% Similarity=0.082 Sum_probs=122.7
Q ss_pred eeeeEEcCCCCEEEEEe---------------------------------cCCeEEEEECCCCCCCcceeeeeEEeecCC
Q 039428 51 CETAKWDDVGRRFLVSF---------------------------------LDGGVGQVLVPDEYSPGTVLEEVKLVKEDD 97 (335)
Q Consensus 51 pegia~d~~g~~~~~~~---------------------------------~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~ 97 (335)
+.+++|+|+|+.+++.. ...+|+++|..+++ .. .+....
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~-----~~---~~~~~~ 254 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK-----TV---YLQTGE 254 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE-----EE---ECCCCS
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc-----eE---eeccCC
Confidence 47899999999777763 23579999864443 11 111111
Q ss_pred cCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCC-eEEEEeecCCCccCCCCCCceeECC--CCcEEEEeCC-
Q 039428 98 VVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW-KRLFLTQLSGKSEEKSTADDIAVDA--EGNAYVTDVV- 173 (335)
Q Consensus 98 ~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~p~~~~vd~--~G~lyV~d~~- 173 (335)
.....+..++++|++..|+++..+.... ...|+.+|.+++ +.......... ......+.+++.| ||+++++...
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~-~~~v~~~d~~~g~~~~~~~~~~~~-~~~~~~~~~~~sp~~dg~~l~~~~~~ 332 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRAQN-ECKVNAYDAETGRFVRTLFVETDK-HYVEPLHPLTFLPGSNNQFIWQSRRD 332 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTTSC-EEEEEEEETTTCCEEEEEEEEECS-SCCCCCSCCEECTTCSSEEEEEECTT
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCCCC-eeEEEEEECCCCceeeEEEEccCC-CeECccCCceeecCCCCEEEEEEccC
Confidence 1112456889998545577754443222 247999999988 44422211111 0012346789999 9975544332
Q ss_pred -CCeEEEEccCCcEEEEecCCccccccccccccccCe-EEEccCC-eEEEEECCCC----EEEEEeCCCCceeEEEEecc
Q 039428 174 -SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG-IVYHPDG-FLIVIHMCSG----NLFKIDIRKEEEEVKLIELR 246 (335)
Q Consensus 174 -~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G-ia~~~dg-~Lyvad~~~~----~v~~~d~~~~~~~~~~~~~~ 246 (335)
..+||.++.+++....+... ...... ++++||| .||++....+ +|++++.+++ ..+.+..
T Consensus 333 g~~~l~~~~~~~~~~~~l~~~----------~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~- 399 (706)
T 2z3z_A 333 GWNHLYLYDTTGRLIRQVTKG----------EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG--KTKDLTP- 399 (706)
T ss_dssp SSCEEEEEETTSCEEEECCCS----------SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC--CCEESCC-
T ss_pred CccEEEEEECCCCEEEecCCC----------CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC--CceeccC-
Confidence 46899999777765533211 011334 7999999 7888877765 8999999876 3333321
Q ss_pred CCcCCCCCCeEEEcCCCcEEEE-ecC---CCeEEEEEcCCC
Q 039428 247 GGSSLSLGDGLALLSPTKLVVA-GNP---YPSARLVESSDG 283 (335)
Q Consensus 247 g~~~~~~pdGia~d~~g~l~va-~~~---~~~~~v~~~~~~ 283 (335)
. .....+++.++|+.++. ... ...+++++...+
T Consensus 400 ~----~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 400 E----SGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp S----SSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred C----CceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 1 22567899999975544 221 134777776544
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.87 E-value=8.2e-07 Score=83.64 Aligned_cols=195 Identities=13% Similarity=0.158 Sum_probs=120.4
Q ss_pred ceeeeEEcCCCCEEEEEecC---CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 50 LCETAKWDDVGRRFLVSFLD---GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~---~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
...+++|+|+|+.++....+ ..|+.+|..+++ .. .+...+ .....++++|++..|+++ ....+.
T Consensus 180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~-----~~--~l~~~~----~~~~~~~~spdg~~la~~-~~~~g~- 246 (415)
T 2hqs_A 180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-----VR--QVASFP----RHNGAPAFSPDGSKLAFA-LSKTGS- 246 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-----EE--EEECCS----SCEEEEEECTTSSEEEEE-ECTTSS-
T ss_pred cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc-----EE--EeecCC----CcccCEEEcCCCCEEEEE-EecCCC-
Confidence 45789999999977666433 489999965454 11 132222 246789999844445543 222222
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCC--CCeEEEEccCCcEEEEecCCcccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVV--SSKIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~--~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
..|+.+|.++++... +... ......++++|||+ ++++... ..+|+++|.++.....+. ..
T Consensus 247 -~~i~~~d~~~~~~~~---l~~~---~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~---~~------- 309 (415)
T 2hqs_A 247 -LNLYVMDLASGQIRQ---VTDG---RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT---WE------- 309 (415)
T ss_dssp -CEEEEEETTTCCEEE---CCCC---SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC---CS-------
T ss_pred -ceEEEEECCCCCEEe---CcCC---CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEe---cC-------
Confidence 469999999887642 2111 23456789999997 5555432 348999998765433221 11
Q ss_pred ccccCeEEEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCC--eEEE
Q 039428 204 VFGLNGIVYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYP--SARL 277 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~--~~~v 277 (335)
......++++||| .|+++... ...|+++|++++ ....+. . . .....+++.++|+ |+++....+ .+++
T Consensus 310 ~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~--~~~~l~--~-~--~~~~~~~~spdg~~l~~~s~~~~~~~l~~ 382 (415)
T 2hqs_A 310 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG--GVQVLS--S-T--FLDETPSLAPNGTMVIYSSSQGMGSVLNL 382 (415)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC--CEEECC--C-S--SSCEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC--CEEEec--C-C--CCcCCeEEcCCCCEEEEEEcCCCccEEEE
Confidence 1235678999999 67766654 358999999887 343332 2 1 1467899999997 444433222 4666
Q ss_pred EEcC
Q 039428 278 VESS 281 (335)
Q Consensus 278 ~~~~ 281 (335)
++..
T Consensus 383 ~d~~ 386 (415)
T 2hqs_A 383 VSTD 386 (415)
T ss_dssp EETT
T ss_pred EECC
Confidence 6654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.86 E-value=5.4e-06 Score=74.21 Aligned_cols=200 Identities=7% Similarity=0.016 Sum_probs=129.0
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
-...+++|+|+|+.++++..++.|..||..++. .+. .+.... .....+++.+ +++++++..+. .
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~----~~~---~~~~~~---~~v~~~~~~~-~~~~l~s~s~d-----~ 77 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV----EVR---SIQVTE---TPVRAGKFIA-RKNWIIVGSDD-----F 77 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTE----EEE---EEECCS---SCEEEEEEEG-GGTEEEEEETT-----S
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCc----eeE---EeeccC---CcEEEEEEeC-CCCEEEEECCC-----C
Confidence 346799999999988888889999999965443 111 222221 2456788887 45444432221 4
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EE-EEecCCccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LL-SIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~-~~~~~~~~~~~~~~~~~~~ 206 (335)
.|..||.++++....... . ....+.+++.|+++++++.+..+.|..+|.... .. ..+.. ....
T Consensus 78 ~i~vwd~~~~~~~~~~~~----h-~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~----------h~~~ 142 (304)
T 2ynn_A 78 RIRVFNYNTGEKVVDFEA----H-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG----------HEHF 142 (304)
T ss_dssp EEEEEETTTCCEEEEEEC----C-SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC----------CCSC
T ss_pred EEEEEECCCCcEEEEEeC----C-CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc----------cCCc
Confidence 699999998876643322 1 345678999999998888888999999997643 22 22211 1123
Q ss_pred cCeEEEcc-CCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC--CCcEEEEecCCCeEEEEEcCCC
Q 039428 207 LNGIVYHP-DGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS--PTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 207 p~Gia~~~-dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~--~g~l~va~~~~~~~~v~~~~~~ 283 (335)
...++++| ++.++++-..++.|..+|+.... ....+.. + . .....-+.+.+ ++.++++....+.+++.+...+
T Consensus 143 v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~-~~~~~~~-~-~-~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~ 218 (304)
T 2ynn_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT-G-Q-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218 (304)
T ss_dssp EEEEEECTTCTTEEEEEETTSEEEEEETTCSS-CSEEEEC-C-C-TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-ccceecc-C-C-cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC
Confidence 67899999 56788888889999999987653 2222221 1 1 01123445543 5666666554577888887654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-06 Score=79.92 Aligned_cols=204 Identities=13% Similarity=0.123 Sum_probs=126.9
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
....++|+|+|++++++..++.|..||..++.. ... ..+ ..+.. .....++++| +++++++.... ..
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----~~~-~~~-~~~h~-~~v~~~~~sp-~g~~l~s~s~D-----~~ 84 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----ICK-SVL-SEGHQ-RTVRKVAWSP-CGNYLASASFD-----AT 84 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEE----EEE-EEE-CSSCS-SCEEEEEECT-TSSEEEEEETT-----SC
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----eee-eee-ccccC-CcEEEEEECC-CCCEEEEEECC-----Cc
Confidence 356899999999888888899999998543321 111 111 11111 3568899998 55554432211 34
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCccccccccccccccC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
+..||..++.......+.+. ....+.+++.|+|+++++.+..+.|..+|.+.. ....+. .+.. ......
T Consensus 85 v~iw~~~~~~~~~~~~~~~h---~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~~-----h~~~v~ 154 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGH---ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS--VLNS-----HTQDVK 154 (345)
T ss_dssp EEEEEECCC-EEEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEE--EECC-----CCSCEE
T ss_pred EEEEEccCCCeEEEEEccCC---CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEE--EecC-----cCCCeE
Confidence 88888876654322333221 345678999999999988888888988887532 111110 0110 112367
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
.++++|++.++++-..++.|..++...++ ......+.+ . -.....++++++|+++++....+.+++.+
T Consensus 155 ~~~~~p~~~~l~s~s~d~~i~~w~~~~~~-~~~~~~~~~-h-~~~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 155 HVVWHPSQELLASASYDDTVKLYREEEDD-WVCCATLEG-H-ESTVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp EEEECSSSSCEEEEETTSCEEEEEEETTE-EEEEEEECC-C-SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEecCCC-EEEEEEecC-C-CCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 89999999777777778888888877652 122222223 2 23467899999998777755456677765
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-07 Score=87.59 Aligned_cols=207 Identities=13% Similarity=0.155 Sum_probs=123.8
Q ss_pred ceeeeEEcCCCCEEEEEec------CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC
Q 039428 50 LCETAKWDDVGRRFLVSFL------DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~------~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
...+++|+|+|++++.+.. +++|..++..++....+... ...... .....+++.+ +++++++..|
T Consensus 44 ~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~--~~~~~~----~~V~~~~~s~-d~~~l~~s~d-- 114 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT--AGVQTE----AGVTDVAWVS-EKGILVASDS-- 114 (357)
T ss_dssp EEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS--EEEECS----SCEEEEEEET-TTEEEEEETT--
T ss_pred CEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec--ccCCCC----CCEEEEEEcC-CCCEEEEECC--
Confidence 3578999999998887743 67899997654431000000 011111 2467899997 6788775433
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE-EEEecCCccccccccc
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAKEWYK 202 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~~~~~ 202 (335)
+.|..||..+++..........+. ....+.+++.|+|+..++.+..+.|..+|..... ...+..
T Consensus 115 ----g~v~lWd~~~~~~~~~~~~~~~~h-~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~---------- 179 (357)
T 4g56_B 115 ----GAVELWEILEKESLLVNKFAKYEH-DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA---------- 179 (357)
T ss_dssp ----SCEEEC--------CCCCEEECCC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC----------
T ss_pred ----CEEEEeeccccceeEEEeeccCCC-CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC----------
Confidence 359999988765431111100011 2456789999999988888888999999987543 332211
Q ss_pred cccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEEEEc
Q 039428 203 NVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARLVES 280 (335)
Q Consensus 203 ~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~~ 280 (335)
.....+.+++++++ .++++...+++|..+|+..++ ....+.... . -..+..+++.|++ .++++....+.+++.+.
T Consensus 180 h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~-~~~~~~~~~-~-~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~ 256 (357)
T 4g56_B 180 HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK-PATRIDFCA-S-DTIPTSVTWHPEKDDTFACGDETGNVSLVNI 256 (357)
T ss_dssp CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS-CBCBCCCTT-C-CSCEEEEEECTTSTTEEEEEESSSCEEEEES
T ss_pred CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc-eeeeeeecc-c-cccccchhhhhcccceEEEeecccceeEEEC
Confidence 11236789999988 678888888999999988763 222222211 1 1335678888874 66666544467888886
Q ss_pred CCC
Q 039428 281 SDG 283 (335)
Q Consensus 281 ~~~ 283 (335)
..+
T Consensus 257 ~~~ 259 (357)
T 4g56_B 257 KNP 259 (357)
T ss_dssp SCG
T ss_pred CCC
Confidence 544
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.2e-06 Score=75.65 Aligned_cols=197 Identities=13% Similarity=0.097 Sum_probs=123.7
Q ss_pred CCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 46 SPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
+......+++|+++++.+++...++.|..||..+++ .+. .+..+ .....+++++++..++++..+....
T Consensus 72 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~---~~~~~----~~v~~~~~~~~~~~l~~~~~~~~~~ 140 (369)
T 3zwl_B 72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ----CVA---TWKSP----VPVKRVEFSPCGNYFLAILDNVMKN 140 (369)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC----EEE---EEECS----SCEEEEEECTTSSEEEEEECCBTTB
T ss_pred hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----EEE---EeecC----CCeEEEEEccCCCEEEEecCCccCC
Confidence 333446789999999988888889999999965454 122 22222 3568899998444444433221111
Q ss_pred ccceEEEEECCCCeEE---EEeecCC-----CccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC--cEEEEecCCcc
Q 039428 126 KYSALAAYDLSTWKRL---FLTQLSG-----KSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG--QLLSIIRSPLF 195 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~---~~~~~~~-----~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g--~~~~~~~~~~~ 195 (335)
...|..||.+.+... ....... ..........++++++|+.+++....+.|..+|... +....+..
T Consensus 141 -~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--- 216 (369)
T 3zwl_B 141 -PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL--- 216 (369)
T ss_dssp -CCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC---
T ss_pred -CCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec---
Confidence 135888887544211 1100000 000122667899999998777777889999999875 33332211
Q ss_pred ccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 196 TAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 196 ~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
.......++++|++.++++-..++.|..+|....+ ....+... .....+++.+++..+++..
T Consensus 217 -------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~l~~~~ 278 (369)
T 3zwl_B 217 -------HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ-VLKKYETD-----CPLNTAVITPLKEFIILGG 278 (369)
T ss_dssp -------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECS-----SCEEEEEECSSSSEEEEEE
T ss_pred -------CCCceeEEEECCCCCEEEEecCCceEEEEECCCCc-eeeeecCC-----CCceeEEecCCCceEEEee
Confidence 11237889999999766666788999999998864 44555422 2356899999987666643
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.4e-06 Score=80.12 Aligned_cols=198 Identities=9% Similarity=0.055 Sum_probs=130.6
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
...+++|+++|++++++..++.|..||..+++ .+. . ..+.. .....++++| +++.+++.. . + ..
T Consensus 152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~----~~~---~--~~~h~-~~V~~v~~~p-~~~~l~s~s-~--D--~~ 215 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFE----CIR---T--MHGHD-HNVSSVSIMP-NGDHIVSAS-R--D--KT 215 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCCEEETTSSC----EEE---C--CCCCS-SCEEEEEECS-SSSEEEEEE-T--T--SE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeE---E--EcCCC-CCEEEEEEeC-CCCEEEEEe-C--C--Ce
Confidence 45789999999988888889999999864333 111 1 12211 3567899997 555444322 1 1 36
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCccccccccccccccC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
|..||.+++........ . ....+.+.++++|+++++.+..+.|..+|.... ....+.. .....+
T Consensus 216 i~~wd~~~~~~~~~~~~--h---~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~----------h~~~v~ 280 (410)
T 1vyh_C 216 IKMWEVQTGYCVKTFTG--H---REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE----------HRHVVE 280 (410)
T ss_dssp EEEEETTTCCEEEEEEC--C---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEE
T ss_pred EEEEECCCCcEEEEEeC--C---CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecC----------CCceEE
Confidence 99999998876533221 1 234567899999999998888899999997643 3222211 011256
Q ss_pred eEEEccC--------------------CeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 209 GIVYHPD--------------------GFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 209 Gia~~~d--------------------g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
.++++|+ |.++++-+.++.|..+|+..++ ....+. + . -....++++.++|.++++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~-~~~~~~--~-h-~~~v~~v~~~~~g~~l~s 355 (410)
T 1vyh_C 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLV--G-H-DNWVRGVLFHSGGKFILS 355 (410)
T ss_dssp EEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-EEEEEE--C-C-SSCEEEEEECSSSSCEEE
T ss_pred EEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc-eEEEEE--C-C-CCcEEEEEEcCCCCEEEE
Confidence 6777765 5567777788999999998763 333343 2 1 133578999999987777
Q ss_pred ecCCCeEEEEEcCCC
Q 039428 269 GNPYPSARLVESSDG 283 (335)
Q Consensus 269 ~~~~~~~~v~~~~~~ 283 (335)
....+.+++.+...+
T Consensus 356 ~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 356 CADDKTLRVWDYKNK 370 (410)
T ss_dssp EETTTEEEEECCTTS
T ss_pred EeCCCeEEEEECCCC
Confidence 554577888876543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-05 Score=72.74 Aligned_cols=235 Identities=16% Similarity=0.133 Sum_probs=141.7
Q ss_pred EEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCc------------------------
Q 039428 43 QYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDV------------------------ 98 (335)
Q Consensus 43 ~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~------------------------ 98 (335)
.+.+......+++|++++++++++..++.|..||...++. .. .+..+..
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~----~~---~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK----EH---AVTMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----EE---EEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc----ce---EEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 3444444568999999999888888899999998644431 11 1111100
Q ss_pred ---------------------CCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCC
Q 039428 99 ---------------------VGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTAD 157 (335)
Q Consensus 99 ---------------------~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~ 157 (335)
.......+.+.+++..|+.+..| ..|..||.++++....... . .....
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D------~~v~lwd~~~~~~~~~~~~--h---~~~v~ 200 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD------GTCALWDVESGQLLQSFHG--H---GADVL 200 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEEEEC--C---SSCEE
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCC------CcEEEEeCCCCeEEEEEcC--C---CCCeE
Confidence 00123456666533344443222 3588899988876533322 1 22344
Q ss_pred ceeECC--CCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCC
Q 039428 158 DIAVDA--EGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIR 234 (335)
Q Consensus 158 ~~~vd~--~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~ 234 (335)
.+++.+ +|+.+++.+..+.|..+|.. ++....+.. .....+.++++|++.++++-..++.|..+|+.
T Consensus 201 ~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~----------h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~ 270 (354)
T 2pbi_B 201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET----------HESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270 (354)
T ss_dssp EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC----------CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 566655 57888888888999999976 444432211 11237899999999878888888999999998
Q ss_pred CCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe-CCeEEE
Q 039428 235 KEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK-DGRVYL 313 (335)
Q Consensus 235 ~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~-~g~lyV 313 (335)
..+ ....+.... . ......+++.++|.++++....+.+++.+...+-. ...+.+. ....+++++. +++..+
T Consensus 271 ~~~-~~~~~~~~~-~-~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~----~~~l~~h-~~~v~~l~~spdg~~l~ 342 (354)
T 2pbi_B 271 ADR-EVAIYSKES-I-IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR----VSILFGH-ENRVSTLRVSPDGTAFC 342 (354)
T ss_dssp TTE-EEEEECCTT-C-CSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE----EEEECCC-SSCEEEEEECTTSSCEE
T ss_pred CCc-EEEEEcCCC-c-ccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce----EEEEECC-CCcEEEEEECCCCCEEE
Confidence 763 333333211 1 12346788999998887765557788888755422 2222222 1224567774 555444
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.84 E-value=8.3e-06 Score=73.56 Aligned_cols=197 Identities=11% Similarity=0.131 Sum_probs=127.0
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.....++++++|+.+++...++.|..||..+++ .+. .+. ... .....+++++ ++.++++.... .
T Consensus 66 ~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~----~~~--~~~-~h~---~~v~~~~~~~-~~~~l~s~s~D-----~ 129 (319)
T 3frx_A 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGE----TYQ--RFV-GHK---SDVMSVDIDK-KASMIISGSRD-----K 129 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----EEE--EEE-CCS---SCEEEEEECT-TSCEEEEEETT-----S
T ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC----eeE--EEc-cCC---CcEEEEEEcC-CCCEEEEEeCC-----C
Confidence 345678999999988888889999999975554 111 121 111 2467899997 55555532211 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECC------CCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA------EGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~------~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~ 202 (335)
.|..||.++..+.... +. ......+++.| ++..+++.+..+.|..+|........ .+..
T Consensus 130 ~i~vwd~~~~~~~~~~---~h---~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----~~~~----- 194 (319)
T 3frx_A 130 TIKVWTIKGQCLATLL---GH---NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA----DFIG----- 194 (319)
T ss_dssp CEEEEETTSCEEEEEC---CC---SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE----EECC-----
T ss_pred eEEEEECCCCeEEEEe---cc---CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe----eecC-----
Confidence 5999999765443211 11 22344566655 45577787888999999987543321 1111
Q ss_pred cccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 203 NVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 203 ~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
.....+.++++|+|.++++-..++.|..+|+...+ ....+... .....+++.+++.++++... +.+++.....
T Consensus 195 h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~-----~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~ 267 (319)
T 3frx_A 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK-AMYTLSAQ-----DEVFSLAFSPNRYWLAAATA-TGIKVFSLDP 267 (319)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE-EEEEEECC-----SCEEEEEECSSSSEEEEEET-TEEEEEEETT
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCC-----CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCc
Confidence 11237899999999888888889999999998874 44444422 23578999999986666442 5677777654
Q ss_pred C
Q 039428 283 G 283 (335)
Q Consensus 283 ~ 283 (335)
.
T Consensus 268 ~ 268 (319)
T 3frx_A 268 Q 268 (319)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.6e-07 Score=84.20 Aligned_cols=199 Identities=9% Similarity=0.034 Sum_probs=128.5
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
...+++|+|+|+.+++...++.|..||..+++ .+. .+.... .....+++.++++.++++.... ..
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~----~~~---~~~~h~---~~v~~v~~s~~~~~~~~s~~~d-----g~ 205 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA----VLK---SYNAHS---SEVNCVAACPGKDTIFLSCGED-----GR 205 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTTE----EEE---EECCCS---SCEEEEEECTTCSSCEEEEETT-----SC
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCCc----EEE---EEcCCC---CCEEEEEEccCCCceeeeeccC-----Cc
Confidence 35789999999988888889999999965443 111 221111 3567899987544555543221 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccCC-cEEEEecCCcccccccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
|..||.++++........ .....+..+++.|+ ++++++....+.|..+|... +....+. . .....
T Consensus 206 v~~wd~~~~~~~~~~~~~---~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~-----~-----~~~~v 272 (357)
T 4g56_B 206 ILLWDTRKPKPATRIDFC---ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA-----V-----HSQNI 272 (357)
T ss_dssp EEECCTTSSSCBCBCCCT---TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC-----C-----CSSCE
T ss_pred eEEEECCCCceeeeeeec---cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe-----c-----cceeE
Confidence 999999887654222221 11345678999987 46787777888999999763 3332221 1 11236
Q ss_pred CeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC-CCcEEEEecCCCeEEEEEcCC
Q 039428 208 NGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS-PTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 208 ~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~-~g~l~va~~~~~~~~v~~~~~ 282 (335)
+.++++|++ +++++-..++.|..+|.+.++ ..+.+ + . -....++++.| ++.++++....+.+++.+...
T Consensus 273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~-~~~~~---~-H-~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 273 TGLAYSYHSSPFLASISEDCTVAVLDADFSE-VFRDL---S-H-RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTSCE-EEEEC---C-C-SSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEECCCCc-EeEEC---C-C-CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 889999988 677777778899999998762 22222 2 2 13367899987 677777755456788777643
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-06 Score=81.24 Aligned_cols=199 Identities=15% Similarity=0.110 Sum_probs=129.1
Q ss_pred ceeeeEEcCCCCEEEEEec---------------CCeEEEEECCCC--CCCcceeeeeEEeecCCc-C--CCCcceEEEe
Q 039428 50 LCETAKWDDVGRRFLVSFL---------------DGGVGQVLVPDE--YSPGTVLEEVKLVKEDDV-V--GNATMGIAVD 109 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~---------------~~~I~~~d~~~g--~~~~~v~~~~~~~~~~~~-~--~~~p~Gi~~d 109 (335)
...++.+|+.+++|+++.. ..+|..+|..+. + ++. .+..|.. . ....+.|++|
T Consensus 88 sV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~----li~---~y~~p~~~~~~~S~l~di~VD 160 (381)
T 3q6k_A 88 SIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYP----EVV---RYYFPTRLVEKPTYFGGFAVD 160 (381)
T ss_dssp CEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCC----EEE---EEECCGGGCCCGGGEEEEEEE
T ss_pred EeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCce----eEE---EEECCHHhcccCCccceEEEe
Confidence 4578899999999999921 136999997655 4 233 2233321 1 1235789999
Q ss_pred -CC------CCeEEEEEecCCCCccceEEEEECCCCeEEEEeecC-CC---------ccC---CCCCCceeECCC----C
Q 039428 110 -RP------RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLS-GK---------SEE---KSTADDIAVDAE----G 165 (335)
Q Consensus 110 -~~------~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~-~~---------~~~---~~~p~~~~vd~~----G 165 (335)
.+ ++.+|+ +|... ..|++||.++++-....+-. .+ +.. .....+|+.+|+ +
T Consensus 161 ~~~~~~~c~~~~aYI--tD~~~---~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~ 235 (381)
T 3q6k_A 161 VANPKGDCSETFVYI--TNFLR---GALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGN 235 (381)
T ss_dssp ESCTTTTSCSEEEEE--EETTT---TEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSC
T ss_pred cccCCCCCCccEEEE--EcCCC---CcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCC
Confidence 31 467888 67643 46999999988765333210 01 111 136678999886 4
Q ss_pred -cEEEEeCCCCeEEEEccC----Cc---EEEEecCCccccccccccccccCeEEEc-cCCeEEEEECCCCEEEEEeCCC-
Q 039428 166 -NAYVTDVVSSKIWKVGVE----GQ---LLSIIRSPLFTAKEWYKNVFGLNGIVYH-PDGFLIVIHMCSGNLFKIDIRK- 235 (335)
Q Consensus 166 -~lyV~d~~~~~I~~~d~~----g~---~~~~~~~~~~~~~~~~~~~~~p~Gia~~-~dg~Lyvad~~~~~v~~~d~~~- 235 (335)
.+|+.-..+.++|++..+ .. ..+.++.. +......++++| .+|.||+++...+.|.+.++++
T Consensus 236 ~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~k--------g~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~ 307 (381)
T 3q6k_A 236 RPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNR--------GKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKM 307 (381)
T ss_dssp CEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEEC--------CTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSC
T ss_pred eEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeec--------CCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCC
Confidence 599988777899998742 11 11111110 000112356786 6789999999999999999987
Q ss_pred C--ceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 236 E--EEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 236 ~--~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
. .+....+.... . +..|++|.++.+|.||+..+
T Consensus 308 ~~~~~n~~~l~~d~-~-l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 308 PLRMKNTDVVYTSS-R-FVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp SBCGGGEEEEEECT-T-CCSEEEEEECTTSCEEEEEC
T ss_pred ccccCceEEEEECC-C-ccccCeEEECCCCeEEEEEC
Confidence 3 01445554333 3 78899999999999999966
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.3e-06 Score=76.68 Aligned_cols=202 Identities=13% Similarity=0.106 Sum_probs=128.7
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-.+++|.+++. ++++..++.|..||..+++. ....... ..+.. .....+++++ +++.+++.... ..|
T Consensus 85 v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~----~~~~~~~-~~~H~-~~V~~v~~sp-dg~~l~sgs~d-----~~i 151 (344)
T 4gqb_B 85 VADLTWVGERG-ILVASDSGAVELWELDENET----LIVSKFC-KYEHD-DIVSTVSVLS-SGTQAVSGSKD-----ICI 151 (344)
T ss_dssp EEEEEEETTTE-EEEEETTSEEEEEEECTTSS----CEEEEEE-EECCS-SCEEEEEECT-TSSEEEEEETT-----SCE
T ss_pred EEEEEEeCCCe-EEEEECCCEEEEEeccCCCc----eeEeecc-ccCCC-CCEEEEEECC-CCCEEEEEeCC-----CeE
Confidence 35789999864 55667789999998655542 1110111 11111 3568999998 56555542211 359
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccC
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
..||.++++....... . ....+.+++.+++ +++++.+..+.|..+|... +....+.. . ......+
T Consensus 152 ~iwd~~~~~~~~~~~~--h---~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~-----~~~~~~~ 218 (344)
T 4gqb_B 152 KVWDLAQQVVLSSYRA--H---AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---S-----APGYLPT 218 (344)
T ss_dssp EEEETTTTEEEEEECC--C---SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------CCCEE
T ss_pred EEEECCCCcEEEEEcC--c---CCceEEEEecCCCCCceeeeccccccccccccccceeeeeec---c-----eeeccce
Confidence 9999999887643321 1 3456789999987 5888888889999999763 33332211 0 0122367
Q ss_pred eEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEEEEcCCC
Q 039428 209 GIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 209 Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~~~~~ 283 (335)
.++++|++ +++++-..++.|..+|+..++ .+..+.... .....+++.++| +++++....+.+++.+...+
T Consensus 219 ~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-~~~~~~~h~----~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 219 SLAWHPQQSEVFVFGDENGTVSLVDTKSTS-CVLSSAVHS----QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCS----SCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred eeeecCCCCcceEEeccCCcEEEEECCCCc-EEEEEcCCC----CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 89999965 888888889999999998764 444444222 235789999987 55655544467888876543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.82 E-value=9.2e-07 Score=80.50 Aligned_cols=204 Identities=10% Similarity=0.030 Sum_probs=130.3
Q ss_pred CCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 47 PSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
......+++|+++++.+++...++.|..||..+++. .. ....... ......+++++++..|+++..|
T Consensus 51 h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~---~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d----- 117 (372)
T 1k8k_C 51 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW----KP---TLVILRI-NRAARCVRWAPNEKKFAVGSGS----- 117 (372)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE----EE---EEECCCC-SSCEEEEEECTTSSEEEEEETT-----
T ss_pred CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee----ee---eEEeecC-CCceeEEEECCCCCEEEEEeCC-----
Confidence 334467899999999888888889999998643431 11 1111111 1356889999744444443222
Q ss_pred cceEEEEECCCCeEE-EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-------------------CcE
Q 039428 127 YSALAAYDLSTWKRL-FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-------------------GQL 186 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-------------------g~~ 186 (335)
+.|..||.+++... ....... .. ......+++.++|+.+++....+.|..+|.. ++.
T Consensus 118 -~~v~i~d~~~~~~~~~~~~~~~-~~-~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 194 (372)
T 1k8k_C 118 -RVISICYFEQENDWWVCKHIKK-PI-RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL 194 (372)
T ss_dssp -SSEEEEEEETTTTEEEEEEECT-TC-CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred -CEEEEEEecCCCcceeeeeeec-cc-CCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhh
Confidence 24778887665421 1111111 11 3456789999999988888888999999843 333
Q ss_pred EEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEE
Q 039428 187 LSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLV 266 (335)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~ 266 (335)
...+. ......+.++++|++.++++-..++.|..+|....+ ....+.... .....+++.+++.++
T Consensus 195 ~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~----~~v~~~~~~~~~~~l 259 (372)
T 1k8k_C 195 MFESS----------SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM-AVATLASET----LPLLAVTFITESSLV 259 (372)
T ss_dssp EEECC----------CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT-EEEEEECSS----CCEEEEEEEETTEEE
T ss_pred eEecC----------CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-eeEEEccCC----CCeEEEEEecCCCEE
Confidence 33221 012237899999999666666788999999998764 555554322 235789999999877
Q ss_pred EEecCCCeEEEEEcCC
Q 039428 267 VAGNPYPSARLVESSD 282 (335)
Q Consensus 267 va~~~~~~~~v~~~~~ 282 (335)
++.. .+.+++.+...
T Consensus 260 ~~~~-d~~i~i~~~~~ 274 (372)
T 1k8k_C 260 AAGH-DCFPVLFTYDS 274 (372)
T ss_dssp EEET-TSSCEEEEEET
T ss_pred EEEe-CCeEEEEEccC
Confidence 7763 46677777654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.7e-05 Score=72.30 Aligned_cols=196 Identities=13% Similarity=0.073 Sum_probs=131.4
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
....+++|+++++.++++..++.|..||..+++ .+. .+.... .....+.++ ...++.+..| +
T Consensus 135 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~---~~~~~~---~~v~~~~~~--~~~l~~~~~d------g 196 (401)
T 4aez_A 135 TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT----KLR---TMAGHQ---ARVGCLSWN--RHVLSSGSRS------G 196 (401)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEE---EECCCS---SCEEEEEEE--TTEEEEEETT------S
T ss_pred CCEEEEEECCCCCEEEEECCCCeEEEEECcCCe----EEE---EecCCC---CceEEEEEC--CCEEEEEcCC------C
Confidence 346799999999988888889999999965444 122 221111 245678886 3455553222 4
Q ss_pred eEEEEECCC-CeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCccccccccccccc
Q 039428 129 ALAAYDLST-WKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~~~d~~~-~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~ 206 (335)
.|..||.+. +........ . ......+++.++|+.+++.+..+.|..+|.... ....+.. ....
T Consensus 197 ~i~i~d~~~~~~~~~~~~~----~-~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----------~~~~ 261 (401)
T 4aez_A 197 AIHHHDVRIANHQIGTLQG----H-SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN----------HNAA 261 (401)
T ss_dssp EEEEEETTSSSCEEEEEEC----C-SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC----------CSSC
T ss_pred CEEEEecccCcceeeEEcC----C-CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC----------Ccce
Confidence 699999984 333322211 1 345678999999998888888899999998743 3332211 1223
Q ss_pred cCeEEEccCC-eEEEEEC--CCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE--ecCCCeEEEEEcC
Q 039428 207 LNGIVYHPDG-FLIVIHM--CSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA--GNPYPSARLVESS 281 (335)
Q Consensus 207 p~Gia~~~dg-~Lyvad~--~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va--~~~~~~~~v~~~~ 281 (335)
...++++|++ +++++.. .++.|..+|...++ ....+... .....+++.+++..+++ +...+.+++.+..
T Consensus 262 v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~-~~~~~~~~-----~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~ 335 (401)
T 4aez_A 262 VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA-RVNTVDAG-----SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS 335 (401)
T ss_dssp CCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC-EEEEEECS-----SCEEEEEECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred EEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC-EEEEEeCC-----CcEEEEEECCCCCeEEEEeecCCCcEEEEecC
Confidence 7899999988 7887755 68999999998764 45555432 23678999999976666 3345778888765
Q ss_pred CC
Q 039428 282 DG 283 (335)
Q Consensus 282 ~~ 283 (335)
.+
T Consensus 336 ~~ 337 (401)
T 4aez_A 336 SS 337 (401)
T ss_dssp TT
T ss_pred Cc
Confidence 54
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.5e-06 Score=85.31 Aligned_cols=200 Identities=7% Similarity=-0.002 Sum_probs=134.3
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
-...+++|+|+|+.++++..++.|..||..++. .+. .+.... .....+++++ ++..+++..+. +
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~----~~~---~~~~~~---~~v~~~~~s~-~~~~l~~~~~d-----g 77 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV----EVR---SIQVTE---TPVRAGKFIA-RKNWIIVGSDD-----F 77 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTE----EEE---EEECCS---SCEEEEEEEG-GGTEEEEEETT-----S
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCCc----eEE---EEecCC---CcEEEEEEeC-CCCEEEEEeCC-----C
Confidence 346899999999988888888999999965444 122 222221 3568999998 55544432321 4
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc--EEEEecCCccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ--LLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~--~~~~~~~~~~~~~~~~~~~~~ 206 (335)
.|.+||..+++....... . ......+++.|+|...++.+..+.|..++.+.. ....+.. ....
T Consensus 78 ~i~vw~~~~~~~~~~~~~----~-~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~----------~~~~ 142 (814)
T 3mkq_A 78 RIRVFNYNTGEKVVDFEA----H-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG----------HEHF 142 (814)
T ss_dssp EEEEEETTTCCEEEEEEC----C-SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC----------CSSC
T ss_pred eEEEEECCCCcEEEEEec----C-CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC----------CCCc
Confidence 699999998876643322 1 345678999999987777777889999987643 2222211 1123
Q ss_pred cCeEEEcc-CCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC--CCcEEEEecCCCeEEEEEcCCC
Q 039428 207 LNGIVYHP-DGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS--PTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 207 p~Gia~~~-dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~--~g~l~va~~~~~~~~v~~~~~~ 283 (335)
...++++| ++.++++-..++.|..+|..... ....+.... ......+++.+ ++.++++....+.+++.+...+
T Consensus 143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~~~~---~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 218 (814)
T 3mkq_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTTGQ---ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218 (814)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCSS-CSEEEECCC---TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-ceeEEecCC---CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 67899999 77777777788999999987753 333333211 13367888887 7877777554577888876554
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.3e-06 Score=77.52 Aligned_cols=195 Identities=11% Similarity=0.123 Sum_probs=128.6
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCC-CCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRP-RNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~-~g~l~v~~~D~~~~~~~ 128 (335)
....++|.++++.++++..+++|..||..+++ .+. .+.... .....+.+.+. +++++++.. .. .
T Consensus 156 ~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~----~~~---~~~~h~---~~v~~~~~~~~~~g~~l~sgs-~D----g 220 (354)
T 2pbi_B 156 YLSACSFTNSDMQILTASGDGTCALWDVESGQ----LLQ---SFHGHG---ADVLCLDLAPSETGNTFVSGG-CD----K 220 (354)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCC----EEE---EEECCS---SCEEEEEECCCSSCCEEEEEE-TT----S
T ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe----EEE---EEcCCC---CCeEEEEEEeCCCCCEEEEEe-CC----C
Confidence 34688999999888888889999999975554 122 221111 23456777653 344444322 11 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE-EEEecCCcccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~~~~~~~~~p 207 (335)
.|..||.++++....... . ....+.+++.|+|+.+++.+..+.|..+|..... ...+.... .....
T Consensus 221 ~v~~wd~~~~~~~~~~~~----h-~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~--------~~~~~ 287 (354)
T 2pbi_B 221 KAMVWDMRSGQCVQAFET----H-ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES--------IIFGA 287 (354)
T ss_dssp CEEEEETTTCCEEEEECC----C-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT--------CCSCE
T ss_pred eEEEEECCCCcEEEEecC----C-CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC--------cccce
Confidence 599999998876533221 1 3456789999999999988889999999986543 33222110 11246
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEE
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARL 277 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v 277 (335)
..++++|+|.++++-..++.|..+|...++ ....+. + . -.....+++.++|.++++....+.+++
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~l~--~-h-~~~v~~l~~spdg~~l~sgs~D~~v~v 352 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGS-RVSILF--G-H-ENRVSTLRVSPDGTAFCSGSWDHTLRV 352 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEEC--C-C-SSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCCc-eEEEEE--C-C-CCcEEEEEECCCCCEEEEEcCCCCEEe
Confidence 789999999777777788999999997663 444443 2 2 133678999999987777554455654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-06 Score=80.32 Aligned_cols=207 Identities=10% Similarity=0.032 Sum_probs=130.8
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
...++.++++++++...++.|..||...+. .. .. .... ......+++++ +++++++.... ..|.
T Consensus 101 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~--~~--~~~h-~~~v~~~~~~~-~~~~l~s~s~d-----~~i~ 164 (420)
T 3vl1_A 101 AVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----QR--EI--DQAH-VSEITKLKFFP-SGEALISSSQD-----MQLK 164 (420)
T ss_dssp EEEEECSSSCEEEEEETTSCEEEECTTSCE-----EE--EE--TTSS-SSCEEEEEECT-TSSEEEEEETT-----SEEE
T ss_pred EEEEEecCCCEEEEEECCCCEEEEeCCCcc-----ee--ee--cccc-cCccEEEEECC-CCCEEEEEeCC-----CeEE
Confidence 344778999988888888999999864332 11 12 1121 13578999998 45544432211 3699
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCcccccc-----------
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKE----------- 199 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~----------- 199 (335)
.||.++++....... . ......+++.++|+.+++.+..+.|..+|... +....+....-....
T Consensus 165 iwd~~~~~~~~~~~~----h-~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (420)
T 3vl1_A 165 IWSVKDGSNPRTLIG----H-RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTD 239 (420)
T ss_dssp EEETTTCCCCEEEEC----C-SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCC
T ss_pred EEeCCCCcCceEEcC----C-CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCc
Confidence 999987765432221 1 34567899999999888888889999999764 444333211000000
Q ss_pred ---ccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeE
Q 039428 200 ---WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSA 275 (335)
Q Consensus 200 ---~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~ 275 (335)
..........++++|+|.++++-..++.|..+|+...+ ....+.. + . ......+++.+++. ++++....+.+
T Consensus 240 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-~-~-~~~v~~~~~~~~~~~~l~~g~~dg~i 315 (420)
T 3vl1_A 240 RQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE-QTIQLPS-K-F-TCSCNSLTVDGNNANYIYAGYENGML 315 (420)
T ss_dssp SSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC-EEEEECC-T-T-SSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred ceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc-eeEEccc-c-c-CCCceeEEEeCCCCCEEEEEeCCCeE
Confidence 00011235677889999777777788899999998764 3333322 1 1 13367899999987 77775545778
Q ss_pred EEEEcCCC
Q 039428 276 RLVESSDG 283 (335)
Q Consensus 276 ~v~~~~~~ 283 (335)
++.+...+
T Consensus 316 ~vwd~~~~ 323 (420)
T 3vl1_A 316 AQWDLRSP 323 (420)
T ss_dssp EEEETTCT
T ss_pred EEEEcCCC
Confidence 88887654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.5e-06 Score=80.79 Aligned_cols=234 Identities=9% Similarity=0.047 Sum_probs=142.5
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECC--CCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVP--DEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~--~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
...+++|+++|+.++++ ..++.|..||.. ++.. +. .+..... ...+..+++++++..|+++ +..
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~----~~---~~~~~~~-~~~v~~~~~sp~~~~l~~~--~~~--- 170 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV----LK---LRKRFCF-SKRPNAISIAEDDTTVIIA--DKF--- 170 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC----EE---EEEEEEC-SSCEEEEEECTTSSEEEEE--ETT---
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce----ee---eeecccC-CCCceEEEEcCCCCEEEEE--eCC---
Confidence 36789999999987444 678999999864 3431 22 2211111 1356899999844455553 222
Q ss_pred cceEEEEECCCCeEEE--EeecCCCccCCCCCCceeECCC---CcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccc
Q 039428 127 YSALAAYDLSTWKRLF--LTQLSGKSEEKSTADDIAVDAE---GNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEW 200 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~p~~~~vd~~---G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~ 200 (335)
..|+.||..+++... ...+. +. ....+.++++|+ |+++++....+.|..+|.. ++....+ +..
T Consensus 171 -g~v~~~~~~~~~~~~~~~~~~~--~h-~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~----~~~--- 239 (450)
T 2vdu_B 171 -GDVYSIDINSIPEEKFTQEPIL--GH-VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW----LFG--- 239 (450)
T ss_dssp -SEEEEEETTSCCCSSCCCCCSE--EC-SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE----CCC---
T ss_pred -CcEEEEecCCcccccccceeee--cc-cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee----ecC---
Confidence 359999987654321 00111 11 345678999999 8888877778899999876 3333321 100
Q ss_pred cccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccC--C-------------------cCCCCCCeEEE
Q 039428 201 YKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRG--G-------------------SSLSLGDGLAL 259 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g--~-------------------~~~~~pdGia~ 259 (335)
.......++++ ++.++++-..++.|..+|+..++ ....+.... . ..-....++++
T Consensus 240 --h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 240 --HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK-NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp --CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC-EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred --CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc-EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 11237899999 99766677788999999998874 455554210 0 00012457888
Q ss_pred cCCCcEEEE-ecCCCeEEEEEc--CCCcEEEEEeeeecCCCCCcceEEEEeCCeEEEE
Q 039428 260 LSPTKLVVA-GNPYPSARLVES--SDGWETASVVAKFNGPTHRVATAATVKDGRVYLS 314 (335)
Q Consensus 260 d~~g~l~va-~~~~~~~~v~~~--~~~~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~ 314 (335)
.+++.++++ ....+.+.+.+. ..++.. +....+..+ ..+.++++..+.+|++
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l-~~~~~~~~~--~~v~~~~~~~~~~~v~ 370 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEMSEKQKGDL-ALKQIITFP--YNVISLSAHNDEFQVT 370 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEECSSSTTCE-EEEEEEECS--SCEEEEEEETTEEEEE
T ss_pred eCCCCEEEEEECCCCeEEEEEeccCCCCce-eeccEeccC--CceEEEEecCCcEEEE
Confidence 888865554 434578888887 333221 233334333 3467788876777774
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=7.7e-06 Score=76.02 Aligned_cols=206 Identities=10% Similarity=0.117 Sum_probs=128.9
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
..+++|+++|+.++++..++.|..||..+++ .+. .+.... .....+++++++..|+.+..| ..|
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~----~~~---~~~~h~---~~v~~~~~~p~~~~l~s~s~d------~~v 189 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRK----IVM---ILQGHE---QDIYSLDYFPSGDKLVSGSGD------RTV 189 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTE----EEE---EECCCS---SCEEEEEECTTSSEEEEEETT------SEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCc----EEE---EEccCC---CCEEEEEEcCCCCEEEEecCC------CcE
Confidence 5689999999988888889999999965443 111 222111 246789999844444443222 369
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCc-EEEEecCCccccccccccccccC
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
..||.++++....... ......+++.+ +|+++++.+..+.|..+|.... ....+...... .........
T Consensus 190 ~iwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~---~~~h~~~v~ 260 (393)
T 1erj_A 190 RIWDLRTGQCSLTLSI------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES---GTGHKDSVY 260 (393)
T ss_dssp EEEETTTTEEEEEEEC------SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---------CCCSSCEE
T ss_pred EEEECCCCeeEEEEEc------CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccC---CCCCCCCEE
Confidence 9999998876644332 23456788988 7888888888899999998643 33322111000 001122367
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCcee---------EEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEE---------VKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~---------~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
.++++|+|.++++-..++.|..+|+...... .......+ . -.....+++.+++.++++....+.+++.+
T Consensus 261 ~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-h-~~~v~~~~~~~~~~~l~sgs~D~~v~iwd 338 (393)
T 1erj_A 261 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG-H-KDFVLSVATTQNDEYILSGSKDRGVLFWD 338 (393)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEEC-C-SSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEec-c-cCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 8999999977777778899999988753100 00111112 1 12345788888888777755556788887
Q ss_pred cCCC
Q 039428 280 SSDG 283 (335)
Q Consensus 280 ~~~~ 283 (335)
...+
T Consensus 339 ~~~~ 342 (393)
T 1erj_A 339 KKSG 342 (393)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 6554
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.77 E-value=4.3e-06 Score=77.61 Aligned_cols=206 Identities=17% Similarity=0.098 Sum_probs=131.2
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.....+++|+++++.+++...++.|..||..+++. +. .+.... .....++++++...|+.+..|
T Consensus 139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~----~~---~~~~h~---~~v~~~~~~~~~~~l~s~~~d------ 202 (420)
T 3vl1_A 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN----PR---TLIGHR---ATVTDIAIIDRGRNVLSASLD------ 202 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC----CE---EEECCS---SCEEEEEEETTTTEEEEEETT------
T ss_pred cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC----ce---EEcCCC---CcEEEEEEcCCCCEEEEEcCC------
Confidence 34567899999999888888899999999755542 12 222111 256789999844444443222
Q ss_pred ceEEEEECCCCeEEEEeecCCCc-c------------------CCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EE
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKS-E------------------EKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LL 187 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~-~------------------~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~ 187 (335)
..|..||.++++........... . .....+.++++++|+..++....+.|..+|.... ..
T Consensus 203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 282 (420)
T 3vl1_A 203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT 282 (420)
T ss_dssp SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 35999999988766443321000 0 0244567888999988888888899999998643 33
Q ss_pred EEecCCccccccccccccccCeEEEccCCe-EEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEE
Q 039428 188 SIIRSPLFTAKEWYKNVFGLNGIVYHPDGF-LIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLV 266 (335)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~-Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~ 266 (335)
..+... .......++++|++. ++++-..++.|..+|+...+.....+..... .....+.. +++.++
T Consensus 283 ~~~~~~---------~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~---~~v~~~~~-~~~~~l 349 (420)
T 3vl1_A 283 IQLPSK---------FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG---TPINNVYF-AAGALF 349 (420)
T ss_dssp EEECCT---------TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT---SCEEEEEE-ETTEEE
T ss_pred EEcccc---------cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC---CCceEEEe-CCCCEE
Confidence 222110 112378999999995 8888888899999999875312344442111 12344544 467777
Q ss_pred EEecCCCeEEEEEcCC
Q 039428 267 VAGNPYPSARLVESSD 282 (335)
Q Consensus 267 va~~~~~~~~v~~~~~ 282 (335)
++....+.+++.+...
T Consensus 350 ~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 350 VSSGFDTSIKLDIISD 365 (420)
T ss_dssp EEETTTEEEEEEEECC
T ss_pred EEecCCccEEEEeccC
Confidence 7755446677777543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-05 Score=73.06 Aligned_cols=206 Identities=11% Similarity=0.100 Sum_probs=128.2
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCC-CCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRP-RNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~-~g~l~v~~~D~~~~~~~ 128 (335)
...+++|+++++.++++..++.|..|+..... ......+.... .....+++.++ +++++++.. .. .
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~~-~d----g 79 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHE---GPVWRVDWAHPKFGTILASCS-YD----G 79 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTE-----EEEEEEECCCS---SCEEEEEECCGGGCSEEEEEE-TT----S
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-----ceeeeEecCCC---CcEEEEEeCCCCCCCEEEEec-cC----C
Confidence 45789999999988887788999999853222 11101121111 34678888753 144444322 21 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC--CcEEEEeCCCCeEEEEccCCcE---EEEecCCcccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE--GNAYVTDVVSSKIWKVGVEGQL---LSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~--G~lyV~d~~~~~I~~~d~~g~~---~~~~~~~~~~~~~~~~~ 203 (335)
.|..||.++++.......... ......+++.++ |+++++.+..+.|..+|..... ...+.. .
T Consensus 80 ~v~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----------~ 146 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVHAVH---SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA----------H 146 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCC---SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC----------C
T ss_pred EEEEEEcCCCceeEeeeecCC---CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC----------C
Confidence 599999988864322222111 345778999999 8888888888999999976431 111110 1
Q ss_pred ccccCeEEEcc-------------CCeEEEEECCCCEEEEEeCCCCceeEEEE-eccCCcCCCCCCeEEEcCC---CcEE
Q 039428 204 VFGLNGIVYHP-------------DGFLIVIHMCSGNLFKIDIRKEEEEVKLI-ELRGGSSLSLGDGLALLSP---TKLV 266 (335)
Q Consensus 204 ~~~p~Gia~~~-------------dg~Lyvad~~~~~v~~~d~~~~~~~~~~~-~~~g~~~~~~pdGia~d~~---g~l~ 266 (335)
......++++| ++.++++-..++.|..+|+...+...... ...+ . -.....+++.++ +.++
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-h-~~~v~~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-H-SDWVRDVAWSPTVLLRSYL 224 (379)
T ss_dssp TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC-C-SSCEEEEEECCCCSSSEEE
T ss_pred CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec-c-cCcEeEEEECCCCCCCCeE
Confidence 12367889998 67777777778889888887653122222 1222 1 133678999999 7777
Q ss_pred EEecCCCeEEEEEcCCC
Q 039428 267 VAGNPYPSARLVESSDG 283 (335)
Q Consensus 267 va~~~~~~~~v~~~~~~ 283 (335)
++....+.+++.+...+
T Consensus 225 ~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 225 ASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp EEEETTSCEEEEEESST
T ss_pred EEEeCCCEEEEEeCCCC
Confidence 77554567888876543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.4e-06 Score=85.59 Aligned_cols=241 Identities=15% Similarity=0.126 Sum_probs=135.6
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeec----CCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKE----DDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~----~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
..++..|++|++|+.+ .+.++++++.++.. ....+... ..+..+....|..|. +|+||+++ +
T Consensus 326 v~~i~~D~~g~lWiGt--~~Gl~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lWigt-~----- 391 (758)
T 3ott_A 326 FYSLFRDSKGFYWFGG--ANGLIRFTDPAGER-----HDAIWYRMGDKTYPLSHNRIRHIYEDK-EQQLWIAT-D----- 391 (758)
T ss_dssp EEEEEECTTCCEEEEE--TTEEEEESCTTSSC-----CCCEEECTTCSSSCCSCSCEEEEEECT-TSCEEEEE-T-----
T ss_pred EEEEEEcCCCCEEEee--CCcceeeccccccc-----ceeEEeccCCcCCCCCCCceEEEEECC-CCCEEEEe-C-----
Confidence 3567789999988776 35799997543321 00012211 112224567888885 89999964 2
Q ss_pred cceEEEEECCCCeEEEEeecCCCcc-CCCCCCceeECCCCcEEEEeCCCCeEEEEccCC------cEEEEecCCcccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSE-EKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG------QLLSIIRSPLFTAKE 199 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g------~~~~~~~~~~~~~~~ 199 (335)
..|.+||+++++............ .......+..|++|++||+. ..+.|++++++. +... ....+....
T Consensus 392 -~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT-~~~Gl~~~~~~~~~~~~~~~~~--~~~~~~~~~ 467 (758)
T 3ott_A 392 -GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIST-CLGGIFVVDKHKLMQSTSGQYI--AEQNYSVHN 467 (758)
T ss_dssp -TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEE-SSSCEEEEEHHHHHHCCSSEEE--CSEEECGGG
T ss_pred -CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEE-CCCceEEEccccccccCCccee--ccccccccc
Confidence 249999999887653221111100 12345678889999999974 345799998753 1110 000111100
Q ss_pred ccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 200 WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
.. .......|..+++|+||+.....+-|+++|++.. ....+...+......+..+..|.+|++|++.. +++..++
T Consensus 468 ~l-~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~--~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~--~Gl~~~~ 542 (758)
T 3ott_A 468 GL-SGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTR--EVTKLFADELTGEKSPNYLLCDEDGLLWVGFH--GGVMRIN 542 (758)
T ss_dssp TC-SCSCEEEEEECTTSCEEEEETTCSSEEEEETTTT--EEEEECTTTSCGGGCEEEEEECTTSCEEEEET--TEEEEEC
T ss_pred cc-ccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCC--ceEEecCCCcCCCcccceEEECCCCCEEEEec--CceEEEe
Confidence 00 0113667899999999983323345999999876 55555321100012467899999999999976 5676665
Q ss_pred cCCC-cEEEEEeeeecCCCCCcceEEEEeCCeEEEEeccC
Q 039428 280 SSDG-WETASVVAKFNGPTHRVATAATVKDGRVYLSHLLG 318 (335)
Q Consensus 280 ~~~~-~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~~~~~ 318 (335)
...+ .+.-. ...+ | .....++..+.|+||++...|
T Consensus 543 ~~~~~~~~~~-~~gl--~-~~~i~~i~~~~g~lWi~t~~G 578 (758)
T 3ott_A 543 PKDESQQSIS-FGSF--S-NNEILSMTCVKNSIWVSTTNG 578 (758)
T ss_dssp C--CCCCBCC-CCC------CCEEEEEEETTEEEEEESSC
T ss_pred cCCCceEEec-ccCC--C-ccceEEEEECCCCEEEECCCC
Confidence 4332 11000 0111 1 223445555688999866443
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.6e-05 Score=72.05 Aligned_cols=214 Identities=11% Similarity=0.115 Sum_probs=129.5
Q ss_pred EcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEE----
Q 039428 44 YHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAF---- 119 (335)
Q Consensus 44 ~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~---- 119 (335)
+.+-...-.+++|+|+++.++.+..+++|..||..+++. .. .+.... .....+++++ ++.+.++.
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~----~~---~~~~h~---~~v~~~~~s~-~g~~las~~~d~ 130 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK----TH---AIKLHC---PWVMECAFAP-NGQSVACGGLDS 130 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE----EE---EEECCC---TTCCCCEECT-TSSEEEECCSSS
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc----ce---EEecCC---CCEEEEEECC-CCCEEEEeeCCC
Confidence 444444568999999999888888899999999654431 11 111110 1223344443 22222210
Q ss_pred ---------------------------------------------ecCCCCccceEEEEECCCCeEEEEeecCCCccCCC
Q 039428 120 ---------------------------------------------TDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKS 154 (335)
Q Consensus 120 ---------------------------------------------~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 154 (335)
+.. + ..|..||.++++.........+.....
T Consensus 131 ~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~--D--~~i~~wd~~~~~~~~~~~~~~~~~h~~ 206 (380)
T 3iz6_a 131 ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG--D--QTCVLWDVTTGQRISIFGSEFPSGHTA 206 (380)
T ss_dssp CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECT--T--SCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred cEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECC--C--CcEEEEEcCCCcEEEEeecccCCCCcc
Confidence 110 1 347777877766543221111111123
Q ss_pred CCCceeECC-CCcEEEEeCCCCeEEEEccC--CcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEE
Q 039428 155 TADDIAVDA-EGNAYVTDVVSSKIWKVGVE--GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKI 231 (335)
Q Consensus 155 ~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~--g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~ 231 (335)
....+++.+ +++++++.+..+.|..+|.. ++....+.. .....+.++++|+|..+++-+.++.|..+
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~----------h~~~v~~v~~~p~~~~l~s~s~D~~i~lw 276 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG----------HEGDINSVKFFPDGQRFGTGSDDGTCRLF 276 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC----------CSSCCCEEEECTTSSEEEEECSSSCEEEE
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC----------cCCCeEEEEEecCCCeEEEEcCCCeEEEE
Confidence 345677766 68899998889999999975 222222211 11237899999999888888899999999
Q ss_pred eCCCCceeEEEEeccCC---cCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 232 DIRKEEEEVKLIELRGG---SSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 232 d~~~~~~~~~~~~~~g~---~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
|+..++ ....+..... ........+++.++|.++++....+.+++.+...+
T Consensus 277 d~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~ 330 (380)
T 3iz6_a 277 DMRTGH-QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA 330 (380)
T ss_dssp ETTTTE-EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred ECCCCc-EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence 998874 4444432211 11223578999999998888665577888886544
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.4e-05 Score=69.43 Aligned_cols=208 Identities=10% Similarity=-0.022 Sum_probs=132.3
Q ss_pred cCCCcceeeeEEcCCC-CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC
Q 039428 45 HSPSFLCETAKWDDVG-RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 45 ~~~~~~pegia~d~~g-~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
.+-.-...++++++++ ++++.+..+++|..|+...... .... ......+.. .....+++.+ ++++.++....
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~---~~~~-~~~~~~~h~-~~v~~~~~s~-dg~~l~s~s~D- 86 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ---KFGV-PVRSFKGHS-HIVQDCTLTA-DGAYALSASWD- 86 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT---EEEE-EEEEEECCS-SCEEEEEECT-TSSEEEEEETT-
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc---cccc-cceEEeCCc-ccEEEEEECC-CCCEEEEEeCC-
Confidence 3334446789999875 6666668899999987432110 0110 111111111 3467889997 55555432211
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccc
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
..|..||.++++....... . ....+.++++++++++++.+..+.|..+|.+++....+...
T Consensus 87 ----~~v~~wd~~~~~~~~~~~~----h-~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h---------- 147 (319)
T 3frx_A 87 ----KTLRLWDVATGETYQRFVG----H-KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGH---------- 147 (319)
T ss_dssp ----SEEEEEETTTTEEEEEEEC----C-SSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCC----------
T ss_pred ----CEEEEEECCCCCeeEEEcc----C-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEecc----------
Confidence 3699999999876633321 1 34567899999999999988899999999987765433210
Q ss_pred ccccCeEEEcc------CCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEE
Q 039428 204 VFGLNGIVYHP------DGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARL 277 (335)
Q Consensus 204 ~~~p~Gia~~~------dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v 277 (335)
......+++.| ++.++++-..++.|..+|+...+ ....+. + . -.....+++.++|+++++....+.+++
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~--~-h-~~~v~~~~~sp~g~~l~s~~~dg~i~i 222 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-IEADFI--G-H-NSNINTLTASPDGTLIASAGKDGEIML 222 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-EEEEEC--C-C-CSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-hheeec--C-C-CCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 11245667766 34467777788899999998763 223332 2 1 133578999999998888665577888
Q ss_pred EEcCCC
Q 039428 278 VESSDG 283 (335)
Q Consensus 278 ~~~~~~ 283 (335)
.+...+
T Consensus 223 wd~~~~ 228 (319)
T 3frx_A 223 WNLAAK 228 (319)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 887654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.8e-06 Score=73.28 Aligned_cols=185 Identities=12% Similarity=0.093 Sum_probs=111.0
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCC-CCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPD-EYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~-g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
....+++|+|+|+.++++. ++.|+.+|..+ ++. . .+.... .......+++++++..|+++..+..+.
T Consensus 42 ~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-----~--~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~-- 109 (297)
T 2ojh_A 42 ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-----E--KVDTGF--ATICNNDHGISPDGALYAISDKVEFGK-- 109 (297)
T ss_dssp SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-----E--ECCCTT--CCCBCSCCEECTTSSEEEEEECTTTSS--
T ss_pred cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-----e--Eecccc--ccccccceEECCCCCEEEEEEeCCCCc--
Confidence 3467999999999777764 78999999654 331 1 122111 113457899998444454432111111
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCC--eEEEEccCCcEEEEecCCccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSS--KIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~--~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
..|+.+|..+++... +.. ....+.+++.|+|+ ++++....+ .||.++.++.....+.. ..
T Consensus 110 ~~l~~~~~~~~~~~~---~~~----~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~ 172 (297)
T 2ojh_A 110 SAIYLLPSTGGTPRL---MTK----NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH----------GE 172 (297)
T ss_dssp CEEEEEETTCCCCEE---CCS----SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC----------SS
T ss_pred ceEEEEECCCCceEE---eec----CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc----------CC
Confidence 569999988765432 211 12356789999996 554544444 67788776554432211 11
Q ss_pred cccCeEEEccCC-eEEEEEC--CCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 205 FGLNGIVYHPDG-FLIVIHM--CSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~--~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
.....++++|+| .|+++.. ...+|+.++..+. ....+.... .....+++.++|+.++.
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~----~~~~~~~~s~dg~~l~~ 233 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS--SVERITDSA----YGDWFPHPSPSGDKVVF 233 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--CEEECCCCS----EEEEEEEECTTSSEEEE
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCCC--CcEEEecCC----cccCCeEECCCCCEEEE
Confidence 236789999999 5776653 4568888887765 444433211 22456889999864333
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.73 E-value=3.8e-05 Score=70.77 Aligned_cols=186 Identities=17% Similarity=0.164 Sum_probs=107.7
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc-
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG- 181 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d- 181 (335)
...++++|++..+.+++++. + ..|..||+++++....... ....+++++.|||++.++.+.. .+.+++
T Consensus 136 ~~~v~fSpDg~~la~as~~~--d--~~i~iwd~~~~~~~~~~~~------~~~V~~v~fspdg~~l~s~s~~-~~~~~~~ 204 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKV--P--AIMRIIDPSDLTEKFEIET------RGEVKDLHFSTDGKVVAYITGS-SLEVIST 204 (365)
T ss_dssp EEEEEECTTSSCEEEEESCS--S--CEEEEEETTTTEEEEEEEC------SSCCCEEEECTTSSEEEEECSS-CEEEEET
T ss_pred EEEEEEcCCCCEEEEEECCC--C--CEEEEeECCCCcEEEEeCC------CCceEEEEEccCCceEEeccce-eEEEEEe
Confidence 56799998444455543322 2 4699999999887754332 2457899999999988876654 455555
Q ss_pred cCCcEEEEecCCccccccccccccccCeEEEccCCeEEE-EECCCC---EEEEEeCCCCce-eEEEEeccCCcCCCCCCe
Q 039428 182 VEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIV-IHMCSG---NLFKIDIRKEEE-EVKLIELRGGSSLSLGDG 256 (335)
Q Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyv-ad~~~~---~v~~~d~~~~~~-~~~~~~~~g~~~~~~pdG 256 (335)
..++..... .... .......++++|||..++ +....+ .++.++...... ..+...+.+ . ......
T Consensus 205 ~~~~~~~~~---~~~~-----~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~-~~~V~~ 274 (365)
T 4h5i_A 205 VTGSCIARK---TDFD-----KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-R-FKGITS 274 (365)
T ss_dssp TTCCEEEEE---CCCC-----TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES-S-CSCEEE
T ss_pred ccCcceeee---ecCC-----CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC-C-CCCeEe
Confidence 445443311 0100 112367899999995444 433322 566667665421 111122222 1 133567
Q ss_pred EEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeee-cCCCCCcceEEEEe-CCeEEEE
Q 039428 257 LALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKF-NGPTHRVATAATVK-DGRVYLS 314 (335)
Q Consensus 257 ia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~-~~p~~~~Pt~va~~-~g~lyV~ 314 (335)
+++.|+|+++++....+.+++.+...+ +.+..+ .+. ....++++|. +|++.++
T Consensus 275 ~~~Spdg~~lasgs~D~~V~iwd~~~~----~~~~~~~~gH-~~~V~~v~fSpdg~~laS 329 (365)
T 4h5i_A 275 MDVDMKGELAVLASNDNSIALVKLKDL----SMSKIFKQAH-SFAITEVTISPDSTYVAS 329 (365)
T ss_dssp EEECTTSCEEEEEETTSCEEEEETTTT----EEEEEETTSS-SSCEEEEEECTTSCEEEE
T ss_pred EEECCCCCceEEEcCCCEEEEEECCCC----cEEEEecCcc-cCCEEEEEECCCCCEEEE
Confidence 899999998877655577999887654 233332 111 1224677774 5555553
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.9e-06 Score=78.81 Aligned_cols=169 Identities=15% Similarity=0.203 Sum_probs=100.1
Q ss_pred ceeeeEEcCCCC-------EEEEE-ec--CCeEEEE--ECCCCCCCcceeeeeEEeec---CCcCC-CCcceEEE--eCC
Q 039428 50 LCETAKWDDVGR-------RFLVS-FL--DGGVGQV--LVPDEYSPGTVLEEVKLVKE---DDVVG-NATMGIAV--DRP 111 (335)
Q Consensus 50 ~pegia~d~~g~-------~~~~~-~~--~~~I~~~--d~~~g~~~~~v~~~~~~~~~---~~~~~-~~p~Gi~~--d~~ 111 (335)
.++++.+.++=. +.+++ .. +++|..| |+..+. +. -+.. |-... ..|.|+++ ++.
T Consensus 69 ~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-----l~---~i~~~~~pv~t~~~~pyGlcly~~~~ 140 (355)
T 3amr_A 69 KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-----LQ---SMTDPDHPIATAINEVYGFTLYHSQK 140 (355)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-----EE---ECSCTTSCEECCCSSCCCEEEEECTT
T ss_pred CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-----ee---eccccccCcCCCCCCeeEEEEEecCC
Confidence 467777766321 45666 55 5776555 643232 22 1211 10011 57899999 765
Q ss_pred CCeEEEEEecCCCCccceEEEEEC---CCC----eEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccC
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDL---STW----KRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVE 183 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~---~~~----~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~ 183 (335)
.+.+|+...+.. +.+..|++ ..+ +++....+ ...|.++++|+. |.+||++...+ ||+++++
T Consensus 141 ~g~~yafV~~k~----G~~~q~~l~~~~~g~~~~~lVR~f~l------gsq~EgcvvDd~~g~Lyv~eEd~G-Iw~~da~ 209 (355)
T 3amr_A 141 TGKYYAMVTGKE----GEFEQYELKADKNGYISGKKVRAFKM------NSQTEGMAADDEYGRLYIAEEDEA-IWKFSAE 209 (355)
T ss_dssp TCCEEEEEECSS----SEEEEEEEEECTTSCEEEEEEEEEEC------SSCEEEEEEETTTTEEEEEETTTE-EEEEECS
T ss_pred CCcEEEEEECCC----CeEEEEEEEeCCCCcccceEEEEecC------CCCcceEEEcCCCCeEEEecccce-EEEEeCC
Confidence 676555445443 23555544 333 22333333 246789999985 89999999855 9999954
Q ss_pred --C----cEEEEecCCccccccccccccccCeEEEcc--C--CeEEEEECCCCEEEEEeCCCCceeEEEEec
Q 039428 184 --G----QLLSIIRSPLFTAKEWYKNVFGLNGIVYHP--D--GFLIVIHMCSGNLFKIDIRKEEEEVKLIEL 245 (335)
Q Consensus 184 --g----~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~--d--g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~ 245 (335)
+ +.+..++.+.+. ..+.||++.+ + |+|++++.+++++.+||.......+..|.+
T Consensus 210 p~~~~~~~~v~~~~~g~l~--------aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~I 273 (355)
T 3amr_A 210 PDGGSNGTVIDRADGRHLT--------RDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRI 273 (355)
T ss_dssp TTSCSCCEEEEEBSSSSBC--------SCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred cCCCCCceEEEEecCCccc--------cCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEe
Confidence 3 222222222222 2489999953 3 479999999999999999743115556654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.9e-06 Score=78.82 Aligned_cols=207 Identities=12% Similarity=0.073 Sum_probs=131.6
Q ss_pred CCcceeeeEEcCCC-CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 47 PSFLCETAKWDDVG-RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 47 ~~~~pegia~d~~g-~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
......+++|++++ ++++++..++.|..||..+++ .+. .+.... .......+++++++..|+++..|
T Consensus 130 h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~----~~~---~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d---- 197 (402)
T 2aq5_A 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA----AVL---TLGPDV-HPDTIYSVDWSRDGALICTSCRD---- 197 (402)
T ss_dssp CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE----EEE---EECTTT-CCSCEEEEEECTTSSCEEEEETT----
T ss_pred CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC----ccE---EEecCC-CCCceEEEEECCCCCEEEEEecC----
Confidence 33456789999998 577776888999999965443 111 221011 11356899999843444443222
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEe---CCCCeEEEEccCCcE--EEEecCCccccccc
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTD---VVSSKIWKVGVEGQL--LSIIRSPLFTAKEW 200 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d---~~~~~I~~~d~~g~~--~~~~~~~~~~~~~~ 200 (335)
+.|..||+++++....... . .....+..+++.++|+++++. +..+.|..+|..... ..... +
T Consensus 198 --~~i~iwd~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~---~----- 264 (402)
T 2aq5_A 198 --KRVRVIEPRKGTVVAEKDR-P--HEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE---L----- 264 (402)
T ss_dssp --SEEEEEETTTTEEEEEEEC-S--SCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE---C-----
T ss_pred --CcEEEEeCCCCceeeeecc-C--CCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe---c-----
Confidence 3699999998877644311 1 112346789999999988877 678899999986421 11110 0
Q ss_pred cccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 201 YKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
........++++|++ .|+++...++.|..++...++.....+.... . -....++++.+++.+.++.. ..+++.+
T Consensus 265 -~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~-~~~v~~~~~sp~~~~~~s~~--~~~~~~~ 339 (402)
T 2aq5_A 265 -DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-S-KESQRGMGYMPKRGLEVNKC--EIARFYK 339 (402)
T ss_dssp -CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-C-SSCCSEEEECCGGGSCGGGT--EEEEEEE
T ss_pred -cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-c-CCcccceEEecccccceecc--eeEEEEE
Confidence 012347789999999 7778888889999999887631144443211 1 13478999999988766544 4566666
Q ss_pred cCCC
Q 039428 280 SSDG 283 (335)
Q Consensus 280 ~~~~ 283 (335)
...+
T Consensus 340 l~~~ 343 (402)
T 2aq5_A 340 LHER 343 (402)
T ss_dssp EETT
T ss_pred cCCC
Confidence 5443
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.8e-07 Score=84.55 Aligned_cols=205 Identities=9% Similarity=0.006 Sum_probs=117.7
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
..+++|+++|+++++...++.|..||..++.. .. .....+. ......+++++++..|..+..| ..|
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-----~~--~~~~~~h-~~~v~~~~~s~~~~~l~s~s~d------~~v 79 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-----KH--ARTFSDH-DKIVTCVDWAPKSNRIVTCSQD------RNA 79 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----EE--CCCBCCC-SSCEEEEEECTTTCCEEEEETT------SSE
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCce-----EE--EEEEecC-CceEEEEEEeCCCCEEEEEeCC------CeE
Confidence 46899999999877777788888887543310 10 1111111 1356889999843444443222 359
Q ss_pred EEEECCCCe-EEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE----EEEecCCcccccccccccc
Q 039428 131 AAYDLSTWK-RLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL----LSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 131 ~~~d~~~~~-~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~----~~~~~~~~~~~~~~~~~~~ 205 (335)
..||.++++ ......+.. . ......+++.++|+.+++.+..+.|..+|.+... ...+..+ ...
T Consensus 80 ~vwd~~~~~~~~~~~~~~~--~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------h~~ 147 (377)
T 3dwl_C 80 YVYEKRPDGTWKQTLVLLR--L-NRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP---------LRS 147 (377)
T ss_dssp EEC------CCCCEEECCC--C-SSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSS---------CCS
T ss_pred EEEEcCCCCceeeeeEecc--c-CCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecc---------cCC
Confidence 999988765 111111211 1 3456789999999877777778899999887543 2222110 123
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEeCCCCc--------------eeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEE--------------EEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP 271 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~--------------~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~ 271 (335)
..+.++++|++.++++-..++.|..+|+...+ ...+.+...+ . -.....+++.++|+++++...
T Consensus 148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~sp~~~~l~~~~~ 225 (377)
T 3dwl_C 148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYP-S-GGWVHAVGFSPSGNALAYAGH 225 (377)
T ss_dssp CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCC-C-SSSEEEEEECTTSSCEEEEET
T ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhccc-C-CceEEEEEECCCCCEEEEEeC
Confidence 47899999999777776777888888875220 0111221112 1 133678999999986666554
Q ss_pred CCeEEEEEcCCC
Q 039428 272 YPSARLVESSDG 283 (335)
Q Consensus 272 ~~~~~v~~~~~~ 283 (335)
.+.+++.+...+
T Consensus 226 d~~i~iwd~~~~ 237 (377)
T 3dwl_C 226 DSSVTIAYPSAP 237 (377)
T ss_dssp TTEEC-CEECST
T ss_pred CCcEEEEECCCC
Confidence 467887776554
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.8e-06 Score=77.68 Aligned_cols=214 Identities=9% Similarity=0.038 Sum_probs=134.4
Q ss_pred ceeeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
...+++|+++ ++++++...++.|..||...+................. .......++++++++.++++.. .. .
T Consensus 115 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~-~d----g 188 (416)
T 2pm9_A 115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS-SVDEVISLAWNQSLAHVFASAG-SS----N 188 (416)
T ss_dssp CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC-SSCCCCEEEECSSCTTEEEEES-SS----S
T ss_pred ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccC-CCCCeeEEEeCCCCCcEEEEEc-CC----C
Confidence 4578999998 77777778889999998654430000000000100011 1135689999985366666432 21 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccC-CCCCCceeECCCC-cEEEEeCCCC---eEEEEccCCc--EEEEecCCcccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEE-KSTADDIAVDAEG-NAYVTDVVSS---KIWKVGVEGQ--LLSIIRSPLFTAKEWY 201 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~-~~~p~~~~vd~~G-~lyV~d~~~~---~I~~~d~~g~--~~~~~~~~~~~~~~~~ 201 (335)
.|..||.++++............+ ....+.++++|+| +++++....+ .|..+|.... ... .+..
T Consensus 189 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~-----~~~~---- 259 (416)
T 2pm9_A 189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ-----TLNQ---- 259 (416)
T ss_dssp CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB-----CCCS----
T ss_pred CEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE-----Eeec----
Confidence 599999998877644433211000 2456789999997 5777766666 8888987642 211 1110
Q ss_pred ccccccCeEEEcc-CCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEEEE
Q 039428 202 KNVFGLNGIVYHP-DGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARLVE 279 (335)
Q Consensus 202 ~~~~~p~Gia~~~-dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~ 279 (335)
........++++| ++.++++-..+++|..+|+...+ ....+.... .....+++.+++ .++++....+.+++.+
T Consensus 260 ~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~-~~~~~~~~~----~~v~~~~~s~~~~~~l~s~~~d~~i~iw~ 334 (416)
T 2pm9_A 260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE-QLSQFPARG----NWCFKTKFAPEAPDLFACASFDNKIEVQT 334 (416)
T ss_dssp CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC-EEEEEECSS----SCCCCEEECTTCTTEEEECCSSSEEEEEE
T ss_pred CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc-cceeecCCC----CceEEEEECCCCCCEEEEEecCCcEEEEE
Confidence 0123478999999 78777777788999999998764 445554322 336789999998 7888765557788887
Q ss_pred cCCC
Q 039428 280 SSDG 283 (335)
Q Consensus 280 ~~~~ 283 (335)
....
T Consensus 335 ~~~~ 338 (416)
T 2pm9_A 335 LQNL 338 (416)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 6543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.68 E-value=3.4e-05 Score=68.87 Aligned_cols=199 Identities=11% Similarity=0.064 Sum_probs=129.2
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
....+++.++++.++++..++.|..||..+++. +. .+ .... .....++++| ++.++++..+. ..
T Consensus 57 ~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~----~~--~~-~~h~---~~v~~~~~~~-~~~~l~sgs~D-----~~ 120 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK----VV--DF-EAHP---DYIRSIAVHP-TKPYVLSGSDD-----LT 120 (304)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE----EE--EE-ECCS---SCEEEEEECS-SSSEEEEEETT-----SC
T ss_pred cEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE----EE--EE-eCCC---CcEEEEEEcC-CCCEEEEECCC-----Ce
Confidence 346789999999888888899999999755541 11 12 1111 2567999998 55554432221 35
Q ss_pred EEEEECCCCe-EEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCcE-EEEecCCccccccccccccc
Q 039428 130 LAAYDLSTWK-RLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 130 v~~~d~~~~~-~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~~~~~~~~~ 206 (335)
|..||.+++. ...... + . ....+.++++| +++++++.+..+.|..+|..... ...+... ....
T Consensus 121 v~lWd~~~~~~~~~~~~--~--h-~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~---------~~~~ 186 (304)
T 2ynn_A 121 VKLWNWENNWALEQTFE--G--H-EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG---------QERG 186 (304)
T ss_dssp EEEEEGGGTTEEEEEEC--C--C-CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECC---------CTTC
T ss_pred EEEEECCCCcchhhhhc--c--c-CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccC---------CcCc
Confidence 9999988763 332221 1 1 34567899998 57888888888999999975322 1111000 1122
Q ss_pred cCeEEEcc--CCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 207 LNGIVYHP--DGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 207 p~Gia~~~--dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
.+.+++.+ ++.++++-..++.|..+|...++ ....+. + . ......+++.+++.++++....+.+++.+...+
T Consensus 187 v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-~~~~~~--~-h-~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-CVATLE--G-H-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EEEEEECCSTTCCEEEEEETTSEEEEEETTTTE-EEEEEE--C-C-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc-cceeeC--C-C-CCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 45677766 66677777889999999998863 444443 2 1 123567899999988777665577888887654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-05 Score=74.00 Aligned_cols=157 Identities=11% Similarity=0.090 Sum_probs=103.9
Q ss_pred ceeeeEEcC-CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDD-VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~-~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
...+++|++ +++.+++...++.|..||.. +.. +. .+..... .......+++++ +++++++.. .. +
T Consensus 120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~----~~--~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~-~d----~ 185 (383)
T 3ei3_B 120 AITGMKFNQFNTNQLFVSSIRGATTLRDFS-GSV----IQ--VFAKTDS-WDYWYCCVDVSV-SRQMLATGD-ST----G 185 (383)
T ss_dssp BEEEEEEETTEEEEEEEEETTTEEEEEETT-SCE----EE--EEECCCC-SSCCEEEEEEET-TTTEEEEEE-TT----S
T ss_pred ceeEEEeCCCCCCEEEEEeCCCEEEEEECC-CCc----eE--EEeccCC-CCCCeEEEEECC-CCCEEEEEC-CC----C
Confidence 457899999 56777666888999999964 431 22 1221111 113468999998 455444322 21 4
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCC-----cEEEEecCCccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEG-----QLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g-----~~~~~~~~~~~~~~~~~~ 202 (335)
.|..||.++..+. .... . ......++++++|+ ++++.+..+.|..+|... .....++
T Consensus 186 ~i~i~d~~~~~~~-~~~~----h-~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----------- 248 (383)
T 3ei3_B 186 RLLLLGLDGHEIF-KEKL----H-KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP----------- 248 (383)
T ss_dssp EEEEEETTSCEEE-EEEC----S-SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-----------
T ss_pred CEEEEECCCCEEE-Eecc----C-CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-----------
Confidence 6999999644333 2221 1 34667899999998 888888889999999763 3333221
Q ss_pred cccccCeEEEcc-CCeEEEEECCCCEEEEEeCCCCc
Q 039428 203 NVFGLNGIVYHP-DGFLIVIHMCSGNLFKIDIRKEE 237 (335)
Q Consensus 203 ~~~~p~Gia~~~-dg~Lyvad~~~~~v~~~d~~~~~ 237 (335)
.......++++| +|.++++-..++.|..+|+...+
T Consensus 249 ~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 249 HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence 112478999999 99777777788999999998753
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-05 Score=74.22 Aligned_cols=221 Identities=11% Similarity=0.105 Sum_probs=130.1
Q ss_pred cceeeeEEc----CCCCE-EEEEecCCeEEEEECCC------CCCCcceee--e-eEEee---cCCcCCCCcceEEEeCC
Q 039428 49 FLCETAKWD----DVGRR-FLVSFLDGGVGQVLVPD------EYSPGTVLE--E-VKLVK---EDDVVGNATMGIAVDRP 111 (335)
Q Consensus 49 ~~pegia~d----~~g~~-~~~~~~~~~I~~~d~~~------g~~~~~v~~--~-~~~~~---~~~~~~~~p~Gi~~d~~ 111 (335)
....+++|+ ++++. +++...++.|..||... +.. +. . ..+.. .+.........+++++
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 196 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT----LNWSPTLELQGTVESPMTPSQFATSVDISE- 196 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT----TCCCCEEEEEEEECCSSSSCCCCCEEEECT-
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce----eeccCcceeeeeeccccCCCCCceEEEECC-
Confidence 446789999 99998 77777889999998644 231 11 0 01110 0011123568999997
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCC-CccCCCCCCceeECCCCcEEEEeCCC---CeEEEEccC-CcE
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSG-KSEEKSTADDIAVDAEGNAYVTDVVS---SKIWKVGVE-GQL 186 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~p~~~~vd~~G~lyV~d~~~---~~I~~~d~~-g~~ 186 (335)
++ ++++ +... +.|..||.++++......... ..........++++++|+++++.... +.|..+|.. ++.
T Consensus 197 ~~-~l~~-~~~d----g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 197 RG-LIAT-GFNN----GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 270 (397)
T ss_dssp TS-EEEE-ECTT----SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred Cc-eEEE-EeCC----CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc
Confidence 55 4443 3221 469999999887664433200 00002356789999999888877766 899999975 444
Q ss_pred EEEecCCccccc---cccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEecc----CC-------c---
Q 039428 187 LSIIRSPLFTAK---EWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELR----GG-------S--- 249 (335)
Q Consensus 187 ~~~~~~~~~~~~---~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~----g~-------~--- 249 (335)
...+..+..... ...........++++|++.++++-..++.|..+|+...+ ....+... +. .
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (397)
T 1sq9_A 271 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-RITTLNMHCDDIEIEEDILAVDEHG 349 (397)
T ss_dssp EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-EEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc-eeEEEecccCcccchhhhhcccccc
Confidence 443321000000 000012247889999999777777789999999998874 44555411 10 0
Q ss_pred ---CCCCCCeEEEcCCC----------cEEEEecCCCeEEEEEcC
Q 039428 250 ---SLSLGDGLALLSPT----------KLVVAGNPYPSARLVESS 281 (335)
Q Consensus 250 ---~~~~pdGia~d~~g----------~l~va~~~~~~~~v~~~~ 281 (335)
.-.....+++.++| +++++....+.+++.+..
T Consensus 350 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 350 DSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp CBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred ccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 01235789999997 566665545777777654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.66 E-value=6.5e-06 Score=77.52 Aligned_cols=212 Identities=9% Similarity=0.037 Sum_probs=134.0
Q ss_pred CCCcceeeeEEcCCCC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCC
Q 039428 46 SPSFLCETAKWDDVGR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLG 124 (335)
Q Consensus 46 ~~~~~pegia~d~~g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~ 124 (335)
+......+++|++++. +++++..++.|..|+...+......+...... ... ......+++++.++.++++..+.
T Consensus 179 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~h-~~~v~~v~~~p~~~~~l~s~~~d-- 253 (430)
T 2xyi_A 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF--TGH-TAVVEDVAWHLLHESLFGSVADD-- 253 (430)
T ss_dssp CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEE--CCC-SSCEEEEEECSSCTTEEEEEETT--
T ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceee--cCC-CCCEeeeEEeCCCCCEEEEEeCC--
Confidence 3333467899999988 77777888999999964422100001100011 111 13568899997566677653322
Q ss_pred CccceEEEEECCCCe---EEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCC--cEEEEecCCccccc
Q 039428 125 NKYSALAAYDLSTWK---RLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEG--QLLSIIRSPLFTAK 198 (335)
Q Consensus 125 ~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g--~~~~~~~~~~~~~~ 198 (335)
+.|..||.+++. ....... . ...++.+++.|+|. ++++....+.|..+|... .....+..
T Consensus 254 ---g~i~i~d~~~~~~~~~~~~~~~----~-~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~------ 319 (430)
T 2xyi_A 254 ---QKLMIWDTRNNNTSKPSHTVDA----H-TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES------ 319 (430)
T ss_dssp ---SEEEEEETTCSCSSSCSEEEEC----C-SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC------
T ss_pred ---CeEEEEECCCCCCCcceeEeec----C-CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec------
Confidence 469999998652 2222211 1 34678899999985 888888889999999764 22221110
Q ss_pred cccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCcee-----------EEEEeccCCcCCCCCCeEEEcCCCc-E
Q 039428 199 EWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEE-----------VKLIELRGGSSLSLGDGLALLSPTK-L 265 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~-----------~~~~~~~g~~~~~~pdGia~d~~g~-l 265 (335)
.......++++|++ .++++....++|..+|+...+.. .......+ . -..+..+++.+++. +
T Consensus 320 ----h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h-~~~v~~~~~~p~~~~~ 393 (430)
T 2xyi_A 320 ----HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG-H-TAKISDFSWNPNEPWI 393 (430)
T ss_dssp ----CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC-C-SSCEEEEEECSSSTTE
T ss_pred ----CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCC-C-CCCceEEEECCCCCCE
Confidence 11237899999998 78888888999999998762100 11222222 2 23478999999997 7
Q ss_pred EEEecCCCeEEEEEcCC
Q 039428 266 VVAGNPYPSARLVESSD 282 (335)
Q Consensus 266 ~va~~~~~~~~v~~~~~ 282 (335)
+++....+.+++.+...
T Consensus 394 l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 394 ICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEEEETTSEEEEEEECH
T ss_pred EEEEECCCCEEEeEccc
Confidence 77766557788877643
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.66 E-value=7.2e-06 Score=83.14 Aligned_cols=233 Identities=16% Similarity=0.122 Sum_probs=131.9
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCC-cCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDD-VVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~-~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
..++.-|++|++|+.+ .+.|.++++.+++ +.......... ...+....|..|. +|+||+++.. ..
T Consensus 375 v~~i~~d~~g~lWigt--~~GL~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWigT~~------~G 440 (758)
T 3ott_A 375 IRHIYEDKEQQLWIAT--DGSINRYDYATRQ-----FIHYNIVDNTGTYNTNWTYYIFEDT-AGQLWISTCL------GG 440 (758)
T ss_dssp EEEEEECTTSCEEEEE--TTEEEEEETTTTE-----EEEEEEECCC--CBSSSEEEEEECT-TSEEEEEESS------SC
T ss_pred eEEEEECCCCCEEEEe--CCcHhhcCcCCCc-----EEEeecCCCcCCCCCceEEEEEEcC-CCCEEEEECC------Cc
Confidence 4577889999988776 4589999964443 22111111111 1123456788885 8999996432 24
Q ss_pred EEEEECCC------CeEE--EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccc
Q 039428 130 LAAYDLST------WKRL--FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWY 201 (335)
Q Consensus 130 v~~~d~~~------~~~~--~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~ 201 (335)
|.++|+++ +... ..... ..+........+..|++|++|+.....+.|+++|++.+....+......
T Consensus 441 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~----- 514 (758)
T 3ott_A 441 IFVVDKHKLMQSTSGQYIAEQNYSV-HNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELT----- 514 (758)
T ss_dssp EEEEEHHHHHHCCSSEEECSEEECG-GGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSC-----
T ss_pred eEEEccccccccCCcceeccccccc-ccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcC-----
Confidence 99999753 2221 11111 0111123456789999999999433346799999986554433111110
Q ss_pred ccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 202 KNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
....++.+..+.+|+||++.. +-|.++++... ..+.+...+ -......++..+ +|+||++.. +++..++..
T Consensus 515 -~~~~~~~i~~d~~g~lWigt~--~Gl~~~~~~~~--~~~~~~~~g-l~~~~i~~i~~~-~g~lWi~t~--~Gl~~~~~~ 585 (758)
T 3ott_A 515 -GEKSPNYLLCDEDGLLWVGFH--GGVMRINPKDE--SQQSISFGS-FSNNEILSMTCV-KNSIWVSTT--NGLWIIDRK 585 (758)
T ss_dssp -GGGCEEEEEECTTSCEEEEET--TEEEEECC--C--CCCBCCCCC----CCEEEEEEE-TTEEEEEES--SCEEEEETT
T ss_pred -CCcccceEEECCCCCEEEEec--CceEEEecCCC--ceEEecccC-CCccceEEEEEC-CCCEEEECC--CCeEEEcCC
Confidence 123477899999999999974 34999998776 223232111 101235667665 799999976 668777765
Q ss_pred CCcEEEEEeeeecCCCCCcceEEEEe--CCeEEEEeccC
Q 039428 282 DGWETASVVAKFNGPTHRVATAATVK--DGRVYLSHLLG 318 (335)
Q Consensus 282 ~~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~~~~ 318 (335)
..- . . .+..+...+ ++..++ +|+||+....|
T Consensus 586 ~~~-~-~---~~~~~~~~~-~~~~~~~~~G~l~fG~~~G 618 (758)
T 3ott_A 586 TMD-A-R---QQNMTNKRF-TSLLFDPKEDCVYLGGADG 618 (758)
T ss_dssp TCC-E-E---EC--CCCCC-SEEEEETTTTEEEEECBSE
T ss_pred Cce-e-E---EecCCCCce-eeeEEECCCCcEEEecCCc
Confidence 431 1 1 111222222 233443 89999855444
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.66 E-value=9e-06 Score=74.73 Aligned_cols=222 Identities=11% Similarity=0.027 Sum_probs=129.8
Q ss_pred CcceeeeEEcCC----C---CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC--CCCcceEEEe----CCCCe
Q 039428 48 SFLCETAKWDDV----G---RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV--GNATMGIAVD----RPRNR 114 (335)
Q Consensus 48 ~~~pegia~d~~----g---~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~--~~~p~Gi~~d----~~~g~ 114 (335)
.....+++|+++ | +.+++...++.|..|+..++..+..... ..+...... ......++++ +++..
T Consensus 62 ~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 139 (397)
T 1sq9_A 62 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF--EKLDLLDSDMKKHSFWALKWGASNDRLLSH 139 (397)
T ss_dssp TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEE--EEECCSCTTGGGSCEEEEEEECCC----CE
T ss_pred CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccc--eeecccccccCCCcEEEEEEeeccCCCCce
Confidence 334578999998 8 8877777789999988543331000000 111111000 1356889999 74444
Q ss_pred -EEEEEecCCCCccceEEEEECCC------CeEEE-----Eeec--CCCccCCCCCCceeECCCCcEEEEeCCCCeEEEE
Q 039428 115 -LLVAFTDVLGNKYSALAAYDLST------WKRLF-----LTQL--SGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKV 180 (335)
Q Consensus 115 -l~v~~~D~~~~~~~~v~~~d~~~------~~~~~-----~~~~--~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~ 180 (335)
|+++..| +.|..||..+ ++... .... ............++++++| ++++....+.|..+
T Consensus 140 ~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~ 212 (397)
T 1sq9_A 140 RLVATDVK------GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS 212 (397)
T ss_dssp EEEEEETT------SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred EEEEEeCC------CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence 4443222 3488888776 32111 1100 0001114567889999999 88888889999999
Q ss_pred ccCC-cEEEEecCCccccccccccccccCeEEEccCCeEEEEECCC---CEEEEEeCCCCceeEEEEeccCC--------
Q 039428 181 GVEG-QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCS---GNLFKIDIRKEEEEVKLIELRGG-------- 248 (335)
Q Consensus 181 d~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~---~~v~~~d~~~~~~~~~~~~~~g~-------- 248 (335)
|... +....+....-. .........++++|++.++++-..+ +.|..+|+...+ ....+.....
T Consensus 213 d~~~~~~~~~~~~~~~h----~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~ 287 (397)
T 1sq9_A 213 ELSTLRPLYNFESQHSM----INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGE 287 (397)
T ss_dssp ETTTTEEEEEEECCC-------CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC--------CC
T ss_pred ECCCCceeEEEeccccc----cccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc-ccceeccCcccccccccc
Confidence 9874 333323210000 0002247899999999666665566 899999998764 4444542000
Q ss_pred -cCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 249 -SSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 249 -~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
..-.....+++.+++.++++....+.+++.+...+
T Consensus 288 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp BSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 00123578999999987777555577888887655
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.66 E-value=3.4e-05 Score=70.05 Aligned_cols=198 Identities=10% Similarity=0.058 Sum_probs=125.2
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
....++|++++.+++.+..++.|..||..+++. +. .+. ... .....++++|++..|..+..| ..
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~----~~--~~~-~h~---~~v~~v~~sp~~~~l~s~~~d------~~ 141 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTT----YK--RFV-GHQ---SEVYSVAFSPDNRQILSAGAE------RE 141 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCE----EE--EEE-CCC---SCEEEEEECSSTTEEEEEETT------SC
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcE----EE--EEc-CCC---CcEEEEEECCCCCEEEEEcCC------CE
Confidence 457899999999887778899999999655541 22 121 111 256789999844444443222 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC----------cEEEEeCCCCeEEEEccCCcEEEEecCCcccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG----------NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKE 199 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G----------~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~ 199 (335)
|..||..+......... ... ......+++.|++ ..+++.+..+.|..+|..++....+..
T Consensus 142 i~~wd~~~~~~~~~~~~--~~~-~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------- 211 (343)
T 2xzm_R 142 IKLWNILGECKFSSAEK--ENH-SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKA------- 211 (343)
T ss_dssp EEEEESSSCEEEECCTT--TSC-SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEEC-------
T ss_pred EEEEeccCCceeeeecc--cCC-CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcC-------
Confidence 99999875433221111 011 2334566677665 677887888999999977655433211
Q ss_pred ccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 200 WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
.....+.++++|+|.++++-..++.|..+|+.........+.. + .....+++.+++.++.+.. .+.+++.+
T Consensus 212 ---h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~----~~v~~v~~sp~~~~la~~~-d~~v~iw~ 282 (343)
T 2xzm_R 212 ---HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA-G----STINQIAFNPKLQWVAVGT-DQGVKIFN 282 (343)
T ss_dssp ---CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC-S----SCEEEEEECSSSCEEEEEE-SSCEEEEE
T ss_pred ---ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecC-C----CcEEEEEECCCCCEEEEEC-CCCEEEEE
Confidence 1123788999999987788888999999998443112233322 2 1256899999988666544 25688877
Q ss_pred cCC
Q 039428 280 SSD 282 (335)
Q Consensus 280 ~~~ 282 (335)
...
T Consensus 283 ~~~ 285 (343)
T 2xzm_R 283 LMT 285 (343)
T ss_dssp SSS
T ss_pred eCC
Confidence 654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-05 Score=81.80 Aligned_cols=202 Identities=10% Similarity=0.016 Sum_probs=134.2
Q ss_pred CCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 47 PSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
......+++|+++++.++++..++.|..||..+++. +. .+.... .....+++++++..|.++..|
T Consensus 54 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~----~~---~~~~~~---~~v~~~~~s~~~~~l~~~~~d----- 118 (814)
T 3mkq_A 54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK----VV---DFEAHP---DYIRSIAVHPTKPYVLSGSDD----- 118 (814)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE----EE---EEECCS---SCEEEEEECSSSSEEEEEETT-----
T ss_pred CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE----EE---EEecCC---CCEEEEEEeCCCCEEEEEcCC-----
Confidence 334468999999999888888899999999655541 22 222111 256789999844445443222
Q ss_pred cceEEEEECCCC-eEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCc-EEEEecCCcccccccccc
Q 039428 127 YSALAAYDLSTW-KRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 127 ~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~ 203 (335)
..|..||.+++ ........ . ......++++| +|+.+++.+..+.|..+|.... ....+... .
T Consensus 119 -g~i~vw~~~~~~~~~~~~~~----~-~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~---------~ 183 (814)
T 3mkq_A 119 -LTVKLWNWENNWALEQTFEG----H-EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG---------Q 183 (814)
T ss_dssp -SEEEEEEGGGTSEEEEEEEC----C-SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC---------C
T ss_pred -CEEEEEECCCCceEEEEEcC----C-CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC---------C
Confidence 35999998876 33322221 1 34567899999 7888888888899999997543 22111110 1
Q ss_pred ccccCeEEEcc--CCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 204 VFGLNGIVYHP--DGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 204 ~~~p~Gia~~~--dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
....+.++++| ++.++++-..+++|..+|...++ ....+.... .....+++.++|.++++....+.+++.+..
T Consensus 184 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-CVATLEGHM----SNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-EEEEEECCS----SCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-EEEEEcCCC----CCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 13478899999 88777777889999999998763 444443221 336789999999877775545678888876
Q ss_pred CC
Q 039428 282 DG 283 (335)
Q Consensus 282 ~~ 283 (335)
.+
T Consensus 259 ~~ 260 (814)
T 3mkq_A 259 TY 260 (814)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.9e-06 Score=77.64 Aligned_cols=214 Identities=7% Similarity=0.078 Sum_probs=131.0
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
...+++|+++++++++...++.|..|+....... ... ........ .....+++++++++++++.. .. ..
T Consensus 69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~---~~~--~~~~~~h~-~~v~~~~~~~~~~~~l~s~~-~d----g~ 137 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA---INS--MARFSNHS-SSVKTVKFNAKQDNVLASGG-NN----GE 137 (416)
T ss_dssp CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC---CCE--EEECCCSS-SCCCEEEECSSSTTBEEEEC-SS----SC
T ss_pred ceEEEEECCCCCeEEEEccCCeEEEeeccccccc---ccc--hhhccCCc-cceEEEEEcCCCCCEEEEEc-CC----Ce
Confidence 3568999999998888878899999986431100 000 11112111 35678999985355555422 21 35
Q ss_pred EEEEECCCCe------EEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccCCcE-EEEecCCcccccccc
Q 039428 130 LAAYDLSTWK------RLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAKEWY 201 (335)
Q Consensus 130 v~~~d~~~~~------~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~~~~ 201 (335)
|..||.++++ ...... ...........+++.++ ++++++....+.|..+|.+... ...+...... .
T Consensus 138 v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----~ 211 (416)
T 2pm9_A 138 IFIWDMNKCTESPSNYTPLTPG--QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN----S 211 (416)
T ss_dssp EEBCBTTTTSSCTTTCCCBCCC--CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS----S
T ss_pred EEEEECCCCccccccccccccc--cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc----c
Confidence 9999998765 221110 00111356788999999 6888888889999999987543 3322211000 0
Q ss_pred ccccccCeEEEccCC-eEEEEECCCC---EEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC-CCcEEEEecCCCeEE
Q 039428 202 KNVFGLNGIVYHPDG-FLIVIHMCSG---NLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS-PTKLVVAGNPYPSAR 276 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg-~Lyvad~~~~---~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~-~g~l~va~~~~~~~~ 276 (335)
......+.++++|++ +++++-..++ .|..+|....+.....+.. + . -.....+++.+ +++++++....+.++
T Consensus 212 ~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~-~-~-~~~v~~~~~s~~~~~~l~s~~~dg~v~ 288 (416)
T 2pm9_A 212 GIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ-G-H-QKGILSLDWCHQDEHLLLSSGRDNTVL 288 (416)
T ss_dssp CCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCS-C-C-SSCEEEEEECSSCSSCEEEEESSSEEE
T ss_pred ccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeec-C-c-cCceeEEEeCCCCCCeEEEEeCCCCEE
Confidence 002347899999998 6777766666 8999999875212222220 1 1 13367899998 787777755457788
Q ss_pred EEEcCCC
Q 039428 277 LVESSDG 283 (335)
Q Consensus 277 v~~~~~~ 283 (335)
+.+...+
T Consensus 289 ~wd~~~~ 295 (416)
T 2pm9_A 289 LWNPESA 295 (416)
T ss_dssp EECSSSC
T ss_pred EeeCCCC
Confidence 8876654
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-05 Score=78.31 Aligned_cols=205 Identities=8% Similarity=-0.027 Sum_probs=126.6
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCC-cceEEEeC--CCCeEEEEEecCCCCc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNA-TMGIAVDR--PRNRLLVAFTDVLGNK 126 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~-p~Gi~~d~--~~g~l~v~~~D~~~~~ 126 (335)
.+..++|+|+|+++++.. ++.|..||..++..+.+... .+.... .. ...++++| ++..|+.+..|
T Consensus 20 ~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~---~~~v~~~~~sp~~~~~~l~s~~~d----- 87 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHG---SSVVTTVKFSPIKGSQYLCSGDES----- 87 (615)
T ss_dssp CCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTT---TSCEEEEEECSSTTCCEEEEEETT-----
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCC---CceEEEEEECcCCCCCEEEEecCC-----
Confidence 467899999999877775 78999998654510000011 222221 24 68999997 54545443222
Q ss_pred cceEEEEECCCC------eEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC----CeEEEEccCCcEEEEecCCccc
Q 039428 127 YSALAAYDLSTW------KRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS----SKIWKVGVEGQLLSIIRSPLFT 196 (335)
Q Consensus 127 ~~~v~~~d~~~~------~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~----~~I~~~d~~g~~~~~~~~~~~~ 196 (335)
..|..||.+++ +......+... ......++++++|+..++-... +.|+.+|. ++....+..
T Consensus 88 -g~v~vw~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~-~~~~~~~~~---- 158 (615)
T 1pgu_A 88 -GKVIVWGWTFDKESNSVEVNVKSEFQVL---AGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-GNSLGEVSG---- 158 (615)
T ss_dssp -SEEEEEEEEEEGGGTEEEEEEEEEEECC---SSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT-CCEEEECCS----
T ss_pred -CEEEEEeCCCCcccccccccccchhhcc---cccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC-CCcceeeec----
Confidence 35889998654 22222222111 3456789999999866654443 68888884 444332211
Q ss_pred cccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCC-CcEEEEecCCCe
Q 039428 197 AKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSP-TKLVVAGNPYPS 274 (335)
Q Consensus 197 ~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~-g~l~va~~~~~~ 274 (335)
.......++++|++ .++++-..++.|..+|....+ ....+...... -.....+++.++ ++++++....+.
T Consensus 159 ------~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~ 230 (615)
T 1pgu_A 159 ------HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-FSASDRTHHKQ-GSFVRDVEFSPDSGEFVITVGSDRK 230 (615)
T ss_dssp ------CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-EEEEECSSSCT-TCCEEEEEECSTTCCEEEEEETTCC
T ss_pred ------CCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-eeeeecccCCC-CceEEEEEECCCCCCEEEEEeCCCe
Confidence 11237889999999 478888889999999988763 33334321100 003568999999 887776544467
Q ss_pred EEEEEcCCC
Q 039428 275 ARLVESSDG 283 (335)
Q Consensus 275 ~~v~~~~~~ 283 (335)
+++.+...+
T Consensus 231 i~vwd~~~~ 239 (615)
T 1pgu_A 231 ISCFDGKSG 239 (615)
T ss_dssp EEEEETTTC
T ss_pred EEEEECCCC
Confidence 888887654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=5.4e-05 Score=80.49 Aligned_cols=164 Identities=11% Similarity=0.037 Sum_probs=109.2
Q ss_pred EEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEec
Q 039428 42 YQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD 121 (335)
Q Consensus 42 ~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D 121 (335)
+.+.+......+++|+++|+.+++...++.|..||..+++. +. .+ .+. ......+++++ ++++.++...
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~----~~---~~--~~h-~~~v~~~~~s~-~~~~l~s~~~ 677 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK----LL---DI--KAH-EDEVLCCAFSS-DDSYIATCSA 677 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----EE---EE--CCC-SSCEEEEEECT-TSSEEEEEET
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE----EE---Ee--ccC-CCCEEEEEEec-CCCEEEEEeC
Confidence 34444444567899999999888778899999999655541 11 22 221 13568999998 5555554322
Q ss_pred CCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC--CcEEEEeCCCCeEEEEccCCc-EEEEecCCccccc
Q 039428 122 VLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE--GNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAK 198 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~--G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~ 198 (335)
. +.|.+||..+++....... . ....+.+++.++ +.++++.+..+.|..+|.+.. ....+..
T Consensus 678 d-----~~v~vwd~~~~~~~~~~~~--~---~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~------ 741 (1249)
T 3sfz_A 678 D-----KKVKIWDSATGKLVHTYDE--H---SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG------ 741 (1249)
T ss_dssp T-----SEEEEEETTTCCEEEEEEC--C---SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC------
T ss_pred C-----CeEEEEECCCCceEEEEcC--C---CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC------
Confidence 1 3699999998877644332 1 345567888884 457788888899999997643 3332211
Q ss_pred cccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCC
Q 039428 199 EWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
.....+.++++|+|..+++-+.++.|..+|....
T Consensus 742 ----h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~ 775 (1249)
T 3sfz_A 742 ----HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775 (1249)
T ss_dssp ----CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGT
T ss_pred ----CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCC
Confidence 1123678899999977777777888888887665
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.2e-05 Score=70.39 Aligned_cols=215 Identities=8% Similarity=-0.007 Sum_probs=123.7
Q ss_pred ceeeeEEcCCCC-EEEEEecCCeEEEEEC----CCCCCCcceeeeeEEeecC--Cc-----CCCCcceEEEeCCCCeEEE
Q 039428 50 LCETAKWDDVGR-RFLVSFLDGGVGQVLV----PDEYSPGTVLEEVKLVKED--DV-----VGNATMGIAVDRPRNRLLV 117 (335)
Q Consensus 50 ~pegia~d~~g~-~~~~~~~~~~I~~~d~----~~g~~~~~v~~~~~~~~~~--~~-----~~~~p~Gi~~d~~~g~l~v 117 (335)
...+++|+|+|+ +++++..++.|..|+. .+++...+ +.....+..+ .. .......+++++ ++.+++
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 124 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWK-LTIIAELRHPFALSASSGKTTNQVTCLAWSH-DGNSIV 124 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEE-EEEEEEEECCCCCC------CBCEEEEEECT-TSSEEE
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccc-ccccccccccccccccccCCCCceEEEEEcC-CCCEEE
Confidence 346899999999 7777777899999986 44431000 0000111111 10 112568999998 555444
Q ss_pred EEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCcc-
Q 039428 118 AFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLF- 195 (335)
Q Consensus 118 ~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~- 195 (335)
+.. .. +.|..||.. ++....... . ......+++.++|+.+++....+.|..+|... +....+....-
T Consensus 125 ~~~-~d----g~i~i~~~~-~~~~~~~~~----~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 193 (425)
T 1r5m_A 125 TGV-EN----GELRLWNKT-GALLNVLNF----H-RAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETG 193 (425)
T ss_dssp EEE-TT----SCEEEEETT-SCEEEEECC----C-CSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred EEe-CC----CeEEEEeCC-CCeeeeccC----C-CccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccC
Confidence 322 21 359999954 444322221 1 34567899999998777767778899888753 33322211000
Q ss_pred ----------------c-------------------------ccc----ccccccccCeEEEccCCeEEEEECCCCEEEE
Q 039428 196 ----------------T-------------------------AKE----WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFK 230 (335)
Q Consensus 196 ----------------~-------------------------~~~----~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~ 230 (335)
. ... ..........++++|++.++++-..++.|..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 273 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI 273 (425)
T ss_dssp ------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred ccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 0 000 0011223577899999966666667888999
Q ss_pred EeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 231 IDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 231 ~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
+|....+ ....+.... .....+++.+++ ++++....+.+++.+...+
T Consensus 274 ~d~~~~~-~~~~~~~~~----~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~ 320 (425)
T 1r5m_A 274 WHGGNGN-SQNCFYGHS----QSIVSASWVGDD-KVISCSMDGSVRLWSLKQN 320 (425)
T ss_dssp ECSSSBS-CSEEECCCS----SCEEEEEEETTT-EEEEEETTSEEEEEETTTT
T ss_pred EECCCCc-cceEecCCC----ccEEEEEECCCC-EEEEEeCCCcEEEEECCCC
Confidence 9987753 334443211 235789999988 5555444477888887654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=5.6e-05 Score=70.10 Aligned_cols=210 Identities=10% Similarity=0.033 Sum_probs=126.3
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
....+++|+++++.+++...++.|..||..+++. .. .+... .....+++.+.+++++++.... +
T Consensus 166 ~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~----~~---~~~~~----~~v~~~~~~~~~~~~l~~~s~d-----~ 229 (393)
T 1erj_A 166 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC----SL---TLSIE----DGVTTVAVSPGDGKYIAAGSLD-----R 229 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----EE---EEECS----SCEEEEEECSTTCCEEEEEETT-----S
T ss_pred CCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee----EE---EEEcC----CCcEEEEEECCCCCEEEEEcCC-----C
Confidence 3457899999999888878899999999654441 11 22221 2456788887456666543221 3
Q ss_pred eEEEEECCCCeEEEEeecCCC--ccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEE-ecCC---ccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGK--SEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSI-IRSP---LFTAKEWYK 202 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~--~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~-~~~~---~~~~~~~~~ 202 (335)
.|..||.++++.......... .........++++++|+.+++.+..+.|..+|........ ...+ .... ....
T Consensus 230 ~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~-~~~~ 308 (393)
T 1erj_A 230 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV-TYIG 308 (393)
T ss_dssp CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEE-EEEC
T ss_pred cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceE-EEec
Confidence 599999998876533321100 0013456789999999988888888999999875321110 0000 0000 0001
Q ss_pred cccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC------CCcEEEEecCCCeEE
Q 039428 203 NVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS------PTKLVVAGNPYPSAR 276 (335)
Q Consensus 203 ~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~------~g~l~va~~~~~~~~ 276 (335)
.......+++++++..+++-..++.|..+|...++ ....+. + + -.....+++.+ +++++++....+.++
T Consensus 309 h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~-~~~~l~--~-h-~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~ 383 (393)
T 1erj_A 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLMLQ--G-H-RNSVISVAVANGSSLGPEYNVFATGSGDCKAR 383 (393)
T ss_dssp CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC-EEEEEE--C-C-SSCEEEEEECSSCTTCTTCEEEEEEETTSEEE
T ss_pred ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe-EEEEEC--C-C-CCCEEEEEecCCcCcCCCCCEEEEECCCCcEE
Confidence 11235689999999777777788999999998764 444443 2 1 12234566543 677777765556677
Q ss_pred EEEc
Q 039428 277 LVES 280 (335)
Q Consensus 277 v~~~ 280 (335)
+.+.
T Consensus 384 iW~~ 387 (393)
T 1erj_A 384 IWKY 387 (393)
T ss_dssp EEEE
T ss_pred ECcc
Confidence 6654
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.3e-05 Score=71.35 Aligned_cols=209 Identities=9% Similarity=0.060 Sum_probs=130.5
Q ss_pred eeeeEEcCCCC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeec--CCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 51 CETAKWDDVGR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKE--DDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 51 pegia~d~~g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~--~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
...+++.+++. .++++..++.|..||..+++. +. .... +.........+.+.+.+++++++....
T Consensus 160 v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~----~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D----- 227 (380)
T 3iz6_a 160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR----IS---IFGSEFPSGHTADVLSLSINSLNANMFISGSCD----- 227 (380)
T ss_dssp CCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE----EE---EECCCSSSSCCSCEEEEEECSSSCCEEEEEETT-----
T ss_pred eEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE----EE---EeecccCCCCccCeEEEEeecCCCCEEEEEECC-----
Confidence 35667777644 455667889999999655541 11 1111 111112456778876466666643221
Q ss_pred ceEEEEECCC-CeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCcccccccccccc
Q 039428 128 SALAAYDLST-WKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 128 ~~v~~~d~~~-~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~ 205 (335)
..|..||.+. ++....... . ....+.+++.|+|+.+++.+..+.|..+|... +....+....... .....
T Consensus 228 ~~v~~wd~~~~~~~~~~~~~----h-~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~---~~~~~ 299 (380)
T 3iz6_a 228 TTVRLWDLRITSRAVRTYHG----H-EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN---DNELP 299 (380)
T ss_dssp SCEEEEETTTTCCCCEEECC----C-SSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS---CCSSC
T ss_pred CeEEEEECCCCCcceEEECC----c-CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc---ccccC
Confidence 3599999873 333222111 1 34578899999999999999999999999874 4444332111000 01112
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEec-cCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIEL-RGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~-~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
....++++|+|.++++-..++.|+.+|....+ ....+.. ...+ ......+++.++|.++++....+.+++.+..
T Consensus 300 ~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 300 IVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE-MVLNLGTLQNSH-EGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SCSEEEECSSSSEEEEECTTSCEEEEETTTCC-EEEEECCSCSSC-CCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred ceEEEEECCCCCEEEEEECCCCEEEEECCCCc-eEEEEecccCCC-CCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 36899999999888888889999999987763 3333321 1112 2346789999999988886655678777654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.62 E-value=0.00011 Score=68.19 Aligned_cols=199 Identities=11% Similarity=0.059 Sum_probs=127.7
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.....++|+ ++.++++..++.|..+|...... ... .+.... ....++++++ ++.++++.... +
T Consensus 177 ~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~---~~~~~~---~~v~~~~~~~-~~~~l~s~~~d-----~ 239 (401)
T 4aez_A 177 ARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH---QIG---TLQGHS---SEVCGLAWRS-DGLQLASGGND-----N 239 (401)
T ss_dssp SCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC---EEE---EEECCS---SCEEEEEECT-TSSEEEEEETT-----S
T ss_pred CceEEEEEC--CCEEEEEcCCCCEEEEecccCcc---eee---EEcCCC---CCeeEEEEcC-CCCEEEEEeCC-----C
Confidence 345678884 46777778899999999642331 111 221111 3568999998 55555432221 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeC--CCCeEEEEccCC-cEEEEecCCccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDV--VSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~--~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~ 204 (335)
.|..||.++++....... . ......+++.|+| +++++.. ..+.|..+|... +....+.. .
T Consensus 240 ~v~iwd~~~~~~~~~~~~----~-~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~-----------~ 303 (401)
T 4aez_A 240 VVQIWDARSSIPKFTKTN----H-NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-----------G 303 (401)
T ss_dssp CEEEEETTCSSEEEEECC----C-SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC-----------S
T ss_pred eEEEccCCCCCccEEecC----C-cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC-----------C
Confidence 599999998776643321 1 3456789999986 5777754 689999999764 44332221 1
Q ss_pred cccCeEEEccCCeEEEE--ECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 205 FGLNGIVYHPDGFLIVI--HMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyva--d~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
.....++++|++..+++ ...++.|..++....+ ......+.+ . ......+++.++|.++++....+.+++.+..+
T Consensus 304 ~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-~~~~~~~~~-h-~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 304 SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-LTKQVDIPA-H-DTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-EEEEEEEEC-C-SSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-ceeEEEecC-C-CCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 23789999999955444 3468899999988763 233333323 2 23478899999998777755557788888765
Q ss_pred C
Q 039428 283 G 283 (335)
Q Consensus 283 ~ 283 (335)
+
T Consensus 381 ~ 381 (401)
T 4aez_A 381 G 381 (401)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-05 Score=72.68 Aligned_cols=191 Identities=15% Similarity=0.089 Sum_probs=103.4
Q ss_pred CEEEEEecCCeEEEEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCe
Q 039428 61 RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWK 139 (335)
Q Consensus 61 ~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~ 139 (335)
+.+|+...++.|+.+|..+|+. . |.. .+.. ......++ ++.+|+...+ ..|+.+|+++|+
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~----~----W~~~~~~~---~~~~p~~~--~~~v~v~~~~------g~l~~~d~~tG~ 164 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTV----A----WQTKVAGE---ALSRPVVS--DGLVLIHTSN------GQLQALNEADGA 164 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCE----E----EEEECSSC---CCSCCEEE--TTEEEEECTT------SEEEEEETTTCC
T ss_pred CEEEEEcCCCEEEEEECCCCCE----E----EEEeCCCc---eEcCCEEE--CCEEEEEcCC------CeEEEEECCCCc
Confidence 4555665678999999766651 1 221 1211 11223444 6899995322 359999999998
Q ss_pred EEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCcccccccccccccc-CeEEEccCCe
Q 039428 140 RLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGL-NGIVYHPDGF 217 (335)
Q Consensus 140 ~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p-~Gia~~~dg~ 217 (335)
.++......+..........+++ +|++|+. ...+.|+.+|++ |+...................... ...++. ++.
T Consensus 165 ~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g-~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~ 241 (376)
T 3q7m_A 165 VKWTVNLDMPSLSLRGESAPTTA-FGAAVVG-GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV-NGV 241 (376)
T ss_dssp EEEEEECCC-----CCCCCCEEE-TTEEEEC-CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE-TTE
T ss_pred EEEEEeCCCCceeecCCCCcEEE-CCEEEEE-cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE-CCE
Confidence 88766553221101111223343 5778885 556899999985 655432211100000000000001 112233 678
Q ss_pred EEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 218 LIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 218 Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
+|++. .++.|+.+|+..++ ....... ..+.+++++ ++++|++... +.+..++..++
T Consensus 242 v~~~~-~~g~l~~~d~~tG~-~~w~~~~------~~~~~~~~~-~~~l~~~~~~-g~l~~~d~~tG 297 (376)
T 3q7m_A 242 VFALA-YNGNLTALDLRSGQ-IMWKREL------GSVNDFIVD-GNRIYLVDQN-DRVMALTIDGG 297 (376)
T ss_dssp EEEEC-TTSCEEEEETTTCC-EEEEECC------CCEEEEEEE-TTEEEEEETT-CCEEEEETTTC
T ss_pred EEEEe-cCcEEEEEECCCCc-EEeeccC------CCCCCceEE-CCEEEEEcCC-CeEEEEECCCC
Confidence 98875 46789999998763 3322222 123456665 6789998652 56888887665
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.60 E-value=5e-05 Score=75.96 Aligned_cols=199 Identities=12% Similarity=0.117 Sum_probs=130.0
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
...+++++++|++++++..++.|..||..++.. .. .+. ... .....+++++++..|..+..| ..
T Consensus 432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~----~~--~~~-~h~---~~v~~~~~s~~~~~l~s~s~D------~~ 495 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS----TR--RFV-GHT---KDVLSVAFSLDNRQIVSASRD------RT 495 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----EE--EEE-CCS---SCEEEEEECTTSSCEEEEETT------SC
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc----ee--EEe-CCC---CCEEEEEEeCCCCEEEEEeCC------CE
Confidence 457899999999888888899999999654431 11 122 111 256789999844445443333 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC--cEEEEeCCCCeEEEEccCCcE-EEEecCCccccccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG--NAYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G--~lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~~~~~~~~~ 206 (335)
|..||..+......... ..+. ....+.+++.+++ ..+++.+..+.|..+|..... ...+.. ....
T Consensus 496 i~iwd~~~~~~~~~~~~-~~~h-~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~----------h~~~ 563 (694)
T 3dm0_A 496 IKLWNTLGECKYTISEG-GEGH-RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG----------HTGY 563 (694)
T ss_dssp EEEECTTSCEEEEECSS-TTSC-SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC----------CSSC
T ss_pred EEEEECCCCcceeeccC-CCCC-CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC----------CCCC
Confidence 99999876544322111 1111 2445778999886 577888888999999987543 332211 1123
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
.+.++++|+|.++++-+.++.|..+|+..++ ....+. . . .....+++.+++.++++... +.+++.+...+
T Consensus 564 v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~-~~~~~~--~-~--~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~ 633 (694)
T 3dm0_A 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGK-KLYSLE--A-N--SVIHALCFSPNRYWLCAATE-HGIKIWDLESK 633 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSBCEEEETTTTE-EEECCB--C-S--SCEEEEEECSSSSEEEEEET-TEEEEEETTTT
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-eEEEec--C-C--CcEEEEEEcCCCcEEEEEcC-CCEEEEECCCC
Confidence 6889999999888888889999999998763 222222 2 1 23568899999887766442 56888887654
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.3e-07 Score=87.80 Aligned_cols=116 Identities=17% Similarity=0.239 Sum_probs=78.1
Q ss_pred CCcceEEEeCCCCeEEEEEecCCC----------------CccceEEEEECCCC-----eE---EEEeecCC--------
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVLG----------------NKYSALAAYDLSTW-----KR---LFLTQLSG-------- 148 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~~----------------~~~~~v~~~d~~~~-----~~---~~~~~~~~-------- 148 (335)
.+|.+++++|.++.+|++..+... ++.+.|++|+.+.+ .. ++......
T Consensus 384 dRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~~ 463 (592)
T 4a9v_A 384 DRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPK 463 (592)
T ss_dssp ECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGG
T ss_pred cCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccccc
Confidence 458999999989999998643210 12367999986432 11 12221110
Q ss_pred -------CccCCCCCCceeECCCCcEEE-EeCC-----------CCeEEEEccC-CcEEEEecCCccccccccccccccC
Q 039428 149 -------KSEEKSTADDIAVDAEGNAYV-TDVV-----------SSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 149 -------~~~~~~~p~~~~vd~~G~lyV-~d~~-----------~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
....++.|++|+||++|+||| +|.. ++.||+++++ |+..+++..+ ....|+
T Consensus 464 ~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P---------~~aEpn 534 (592)
T 4a9v_A 464 GGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP---------IGCEVT 534 (592)
T ss_dssp GCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC---------TTCEEE
T ss_pred cCccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC---------CCcccc
Confidence 012379999999999999999 8863 4489999996 5554433222 123489
Q ss_pred eEEEccCC-eEEEEECCC
Q 039428 209 GIVYHPDG-FLIVIHMCS 225 (335)
Q Consensus 209 Gia~~~dg-~Lyvad~~~ 225 (335)
|++++||+ .|||+-..-
T Consensus 535 GiafSPD~ktLfV~vQHP 552 (592)
T 4a9v_A 535 GISFSPDQKTLFVGIQHP 552 (592)
T ss_dssp EEEECTTSSEEEEEEEST
T ss_pred CCEECCCCCEEEEEEeCC
Confidence 99999999 899886443
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-05 Score=79.90 Aligned_cols=198 Identities=12% Similarity=0.057 Sum_probs=124.7
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.+..++++|+|+.++... .+.|..++..+++. .. .+.... .....++++| +|++.++. +.. ..
T Consensus 20 ~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~----~~---~~~~h~---~~v~~~~~sp-dg~~lasg-~~d----~~ 82 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD----TE---IYTEHS---HQTTVAKTSP-SGYYCASG-DVH----GN 82 (611)
T ss_dssp CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC----CE---EECCCS---SCEEEEEECT-TSSEEEEE-ETT----SE
T ss_pred ceeEEeeCCCCCEEEeCC-CCEEEEecCCCccc----Ce---EecCCC---CceEEEEECC-CCcEEEEE-eCC----CC
Confidence 578899999999877665 56999998644441 11 222221 2467899998 67666642 221 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC----CCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV----SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~----~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
|..||.++++......+... ....++++++|+|+..++-.. .+.|+.+|.. +... .+.. ...
T Consensus 83 v~lWd~~~~~~~~~~~~~~~---~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~-~~~~-----~l~g-----h~~ 148 (611)
T 1nr0_A 83 VRIWDTTQTTHILKTTIPVF---SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG-TSNG-----NLTG-----QAR 148 (611)
T ss_dssp EEEEESSSTTCCEEEEEECS---SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-CBCB-----CCCC-----CSS
T ss_pred EEEeECCCCcceeeEeeccc---CCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC-CCcc-----eecC-----CCC
Confidence 99999865432111112111 245678999999976554332 2478888743 2211 1111 123
Q ss_pred ccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 206 GLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
..+.++|+|++ .++++-..++.|..+|....+ ....+. + + -.....+++.++|+++++....+.+++.+...+
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-~~~~l~--~-H-~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKSTFG--E-H-TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-EEEEEC--C-C-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-Eeeeec--c-c-cCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence 47899999998 567788888889988876652 333332 2 2 234678999999998888665577888886554
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=0.00021 Score=62.82 Aligned_cols=197 Identities=12% Similarity=0.100 Sum_probs=124.0
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.....+++|+++++.+++...++.|..++..+.... +.+. .+ ... ......+.++ ++.++++..|
T Consensus 59 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-~~~~---~~--~~~-~~~i~~~~~~--~~~l~~~~~d------ 123 (313)
T 3odt_A 59 QGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGE-DPLY---TL--IGH-QGNVCSLSFQ--DGVVISGSWD------ 123 (313)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTS-CC-C---EE--CCC-SSCEEEEEEE--TTEEEEEETT------
T ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCC-Cccc---ch--hhc-ccCEEEEEec--CCEEEEEeCC------
Confidence 334678999999999888888999998885433210 0011 11 111 1245677775 4555554322
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
..|..|| .++....... . ......+++.+ +++.+++....+.|..+|.. +....+... ....
T Consensus 124 ~~i~~~d--~~~~~~~~~~----~-~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~---------~~~~ 186 (313)
T 3odt_A 124 KTAKVWK--EGSLVYNLQA----H-NASVWDAKVVSFSENKFLTASADKTIKLWQND-KVIKTFSGI---------HNDV 186 (313)
T ss_dssp SEEEEEE--TTEEEEEEEC----C-SSCEEEEEEEETTTTEEEEEETTSCEEEEETT-EEEEEECSS---------CSSC
T ss_pred CCEEEEc--CCcEEEeccc----C-CCceeEEEEccCCCCEEEEEECCCCEEEEecC-ceEEEEecc---------Cccc
Confidence 3589999 4444432222 1 23455677776 78877777888999999944 333322110 1123
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
...+++++++. +++-..++.|..+|....+ ....+.... .....+++.++|.++.+.. .+.+++.+...+
T Consensus 187 i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~-~~~~~~~~~----~~i~~~~~~~~~~l~~~~~-dg~v~iwd~~~~ 256 (313)
T 3odt_A 187 VRHLAVVDDGH-FISCSNDGLIKLVDMHTGD-VLRTYEGHE----SFVYCIKLLPNGDIVSCGE-DRTVRIWSKENG 256 (313)
T ss_dssp EEEEEEEETTE-EEEEETTSEEEEEETTTCC-EEEEEECCS----SCEEEEEECTTSCEEEEET-TSEEEEECTTTC
T ss_pred EEEEEEcCCCe-EEEccCCCeEEEEECCchh-hhhhhhcCC----ceEEEEEEecCCCEEEEec-CCEEEEEECCCC
Confidence 78899999999 5566688899999998764 444554222 3367899999997655544 467888877654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-05 Score=75.61 Aligned_cols=189 Identities=14% Similarity=0.102 Sum_probs=112.5
Q ss_pred CCCEEEEEec--C---CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEE
Q 039428 59 VGRRFLVSFL--D---GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAY 133 (335)
Q Consensus 59 ~g~~~~~~~~--~---~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~ 133 (335)
.+++++++.. + ++|+.+|. ++.. .. .+.... .....++++|++..|+.+..|. +. ..|+.+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~-~g~~----~~--~l~~~~----~~v~~~~~Spdg~~la~~s~~~-~~--~~i~~~ 208 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDY-DGYN----QF--VVHRSP----QPLMSPAWSPDGSKLAYVTFES-GR--SALVIQ 208 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEET-TSCS----CE--EEEEES----SCEEEEEECTTSSEEEEEECTT-SS--CEEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcC-CCCC----CE--EEeCCC----CcceeeEEcCCCCEEEEEEecC-CC--cEEEEE
Confidence 3455565532 2 68999985 4542 11 132222 2467899998444455543322 11 369999
Q ss_pred ECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCC--CCeEEEEccCCcEEEEecCCccccccccccccccCeE
Q 039428 134 DLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVV--SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~--~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
|.++++....... ......++++|||+ ++++.+. ...|+.+|.+++....+.. .......+
T Consensus 209 d~~tg~~~~l~~~------~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~----------~~~~~~~~ 272 (415)
T 2hqs_A 209 TLANGAVRQVASF------PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD----------GRSNNTEP 272 (415)
T ss_dssp ETTTCCEEEEECC------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC----------CSSCEEEE
T ss_pred ECCCCcEEEeecC------CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC----------CCCcccce
Confidence 9998876533222 23456899999997 6656543 4569999987654442211 01235788
Q ss_pred EEccCC-eEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecC--CCeEEEEEcCCC
Q 039428 211 VYHPDG-FLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNP--YPSARLVESSDG 283 (335)
Q Consensus 211 a~~~dg-~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~--~~~~~v~~~~~~ 283 (335)
+++||| .|+++.... .+|+++|++++ ....+...+ .....+++.++|+ |+++... ...+++++...+
T Consensus 273 ~~spdg~~l~~~s~~~g~~~i~~~d~~~~--~~~~l~~~~----~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 273 TWFPDSQNLAFTSDQAGRPQVYKVNINGG--APQRITWEG----SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTSS--CCEECCCSS----SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred EECCCCCEEEEEECCCCCcEEEEEECCCC--CEEEEecCC----CcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 999999 577665433 38999999886 333332222 2245789999996 4444331 235777776544
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-05 Score=73.01 Aligned_cols=209 Identities=11% Similarity=0.059 Sum_probs=129.1
Q ss_pred eeeeEEcCC----CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 51 CETAKWDDV----GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 51 pegia~d~~----g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
..+++|.++ |+++++...++.|..||..+++ .+. .+.... .....+++++.+++++++....
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~----~~~---~~~~~~---~~i~~~~~~~~~~~~l~s~~~d---- 137 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ----CIK---HYVGHG---NAINELKFHPRDPNLLLSVSKD---- 137 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC----EEE---EEESCC---SCEEEEEECSSCTTEEEEEETT----
T ss_pred EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce----Eee---eecCCC---CcEEEEEECCCCCCEEEEEeCC----
Confidence 568899998 5677777889999999865444 122 222111 3568999997345555543221
Q ss_pred cceEEEEECCCCeEEEEee-cCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEE-EecC-Ccccc------
Q 039428 127 YSALAAYDLSTWKRLFLTQ-LSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLS-IIRS-PLFTA------ 197 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~-~~~~-~~~~~------ 197 (335)
+.|..||.++++...... +.. . ......++++++|+.+++....+.|..+|....... .+.. ..+..
T Consensus 138 -g~i~iwd~~~~~~~~~~~~~~~--~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (366)
T 3k26_A 138 -HALRLWNIQTDTLVAIFGGVEG--H-RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP 213 (366)
T ss_dssp -SCEEEEETTTTEEEEEECSTTS--C-SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSC
T ss_pred -CeEEEEEeecCeEEEEeccccc--c-cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccc
Confidence 359999999887764431 111 1 456788999999988888788899999998743211 0000 00000
Q ss_pred --------cc---ccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCce-------------eEEEEeccCCcCCCC
Q 039428 198 --------KE---WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEE-------------EVKLIELRGGSSLSL 253 (335)
Q Consensus 198 --------~~---~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~-------------~~~~~~~~g~~~~~~ 253 (335)
+. ..........++++ +.++++-..++.|..+|+...+. ....+... ...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 287 (366)
T 3k26_A 214 FISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS----QCD 287 (366)
T ss_dssp CCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS----SCC
T ss_pred ccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc----CCc
Confidence 00 00022346788888 55667777789999999876420 12223221 123
Q ss_pred CCeEEEcCC--CcEEEEecCCCeEEEEEcCCC
Q 039428 254 GDGLALLSP--TKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 254 pdGia~d~~--g~l~va~~~~~~~~v~~~~~~ 283 (335)
...+++.++ |+++++....+.+++.+...+
T Consensus 288 v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 288 IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp SSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred EEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 567888888 887777655577888887654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.6e-06 Score=71.30 Aligned_cols=185 Identities=12% Similarity=0.086 Sum_probs=111.1
Q ss_pred ceeeeEEcCCCCEEEEEec----CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 50 LCETAKWDDVGRRFLVSFL----DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~----~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
...+++|+|+|+.+++... ...|+.++..++. .. .+... .....+++++++..|+++.... +.
T Consensus 86 ~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-----~~---~~~~~----~~~~~~~~spdg~~l~~~~~~~-~~ 152 (297)
T 2ojh_A 86 CNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-----PR---LMTKN----LPSYWHGWSPDGKSFTYCGIRD-QV 152 (297)
T ss_dssp BCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-----CE---ECCSS----SSEEEEEECTTSSEEEEEEEET-TE
T ss_pred cccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-----eE---EeecC----CCccceEECCCCCEEEEEECCC-Cc
Confidence 4567999999998877742 4689999854333 11 22122 1356788998555565432211 11
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEe--CCCCeEEEEccCCcEEEEecCCccccccccc
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTD--VVSSKIWKVGVEGQLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d--~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~ 202 (335)
..|+.+|..+++....... ...+..++++|+|+ ++++. .....||.++.+++....+...
T Consensus 153 --~~l~~~~~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~--------- 215 (297)
T 2ojh_A 153 --FDIYSMDIDSGVETRLTHG------EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS--------- 215 (297)
T ss_dssp --EEEEEEETTTCCEEECCCS------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC---------
T ss_pred --eEEEEEECCCCcceEcccC------CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC---------
Confidence 3588888877765422111 34567899999997 55554 3456888888766554432110
Q ss_pred cccccCeEEEccCC-eEEEEECC----------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEE
Q 039428 203 NVFGLNGIVYHPDG-FLIVIHMC----------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVA 268 (335)
Q Consensus 203 ~~~~p~Gia~~~dg-~Lyvad~~----------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va 268 (335)
......++++|+| .|+++... ..+|+.+|+++++ ........+ . ......+++.++|+ |+++
T Consensus 216 -~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~-~-~~~~~~~~~spdg~~l~~~ 289 (297)
T 2ojh_A 216 -AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN-VETLFDLFG-G-QGTMNSPNWSPDGDEFAYV 289 (297)
T ss_dssp -SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS-CEEEEEEEE-S-TTTSCSCCBCTTSSEEEEE
T ss_pred -CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC-ceeeeccCC-C-CcccccceECCCCCEEEEE
Confidence 1235678999999 56655442 2679999998863 333332222 1 12356788999986 4444
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.56 E-value=0.00015 Score=72.55 Aligned_cols=213 Identities=8% Similarity=-0.007 Sum_probs=136.6
Q ss_pred EcCCCcceeeeEEcCCC-CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 44 YHSPSFLCETAKWDDVG-RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 44 ~~~~~~~pegia~d~~g-~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
+.+..-.-.++++++++ ++++++..+++|..|+......... ... ..+.... .....+++++ ++++.++....
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~-~~~-~~~~~h~---~~v~~v~~s~-~g~~l~sgs~D 451 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG-VAQ-RRLTGHS---HFVEDVVLSS-DGQFALSGSWD 451 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC-EEE-EEEECCS---SCEEEEEECT-TSSEEEEEETT
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc-ccc-ceecCCC---CcEEEEEECC-CCCEEEEEeCC
Confidence 33434446788999876 4555558899999998543221000 010 1111111 2467899997 56655543221
Q ss_pred CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccc
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~ 202 (335)
+.|..||..+++....... . ......++++++|+..++.+..+.|..+|..+.....+... .. .
T Consensus 452 -----g~v~vwd~~~~~~~~~~~~----h-~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~-~~-----~ 515 (694)
T 3dm0_A 452 -----GELRLWDLAAGVSTRRFVG----H-TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG-GE-----G 515 (694)
T ss_dssp -----SEEEEEETTTTEEEEEEEC----C-SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS-TT-----S
T ss_pred -----CcEEEEECCCCcceeEEeC----C-CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC-CC-----C
Confidence 4699999998876533221 1 24567899999999888888889999999876544322110 00 0
Q ss_pred cccccCeEEEccCC--eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 203 NVFGLNGIVYHPDG--FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 203 ~~~~p~Gia~~~dg--~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
.......++++|++ .++++-+.++.|..+|+...+ ....+. + + -.....+++.++|+++++....+.+++.+.
T Consensus 516 h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~--~-h-~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~ 590 (694)
T 3dm0_A 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-LRSTLA--G-H-TGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590 (694)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-EEEEEC--C-C-SSCEEEEEECTTSSEEEEEETTSBCEEEET
T ss_pred CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc-EEEEEc--C-C-CCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 11236789999987 577777788999999998763 333343 2 2 133578999999998888665577888887
Q ss_pred CCC
Q 039428 281 SDG 283 (335)
Q Consensus 281 ~~~ 283 (335)
..+
T Consensus 591 ~~~ 593 (694)
T 3dm0_A 591 AEG 593 (694)
T ss_dssp TTT
T ss_pred CCC
Confidence 655
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.7e-05 Score=78.16 Aligned_cols=201 Identities=11% Similarity=0.092 Sum_probs=116.3
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCC---CCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDE---YSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g---~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
..+++|+|+|+.+++... +.|+.+|..++ . .. .+. .. ......++++|++..|..+ .+
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~-----~~--~l~-~~---~~~~~~~~~SPDG~~la~~-~~------ 171 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAA-----VR--QLT-HG---EGFATDAKLSPKGGFVSFI-RG------ 171 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTS-----CC--BCC-CS---SSCEEEEEECTTSSEEEEE-ET------
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcce-----EE--Ecc-cC---CcccccccCCCCCCEEEEE-eC------
Confidence 368899999998777743 89999996544 3 11 121 11 1256789999844444443 33
Q ss_pred ceEEEEECCCCeEEEEeecCCCc-----------cCCCCCCceeECCCCc-EEEEeCCC---------------------
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKS-----------EEKSTADDIAVDAEGN-AYVTDVVS--------------------- 174 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~-----------~~~~~p~~~~vd~~G~-lyV~d~~~--------------------- 174 (335)
..|+++|.++++........... +++..+..++++|||+ ++++....
T Consensus 172 ~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~ 251 (741)
T 2ecf_A 172 RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQ 251 (741)
T ss_dssp TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence 25999999988765322111000 0012357899999996 66653221
Q ss_pred -----------CeEEEEccCC-cEEEEecCCccccccccccccccCeEEEccCC-eEEEEEC----CCCEEEEEeCCCCc
Q 039428 175 -----------SKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHM----CSGNLFKIDIRKEE 237 (335)
Q Consensus 175 -----------~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~----~~~~v~~~d~~~~~ 237 (335)
..|+.+|.++ .....+... . ........+++ ||| .|+++.. ...+|+++|+.+++
T Consensus 252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~---~----~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~ 323 (741)
T 2ecf_A 252 RYPAAGDANVQVKLGVISPAEQAQTQWIDLG---K----EQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ 323 (741)
T ss_dssp ECCBTTSCCCEEEEEEECSSTTCCCEEECCC---S----CSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred ecCCCCCCCCeeEEEEEECCCCCceEEecCC---C----CcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc
Confidence 1788888765 443322110 0 01223678999 999 6776543 24689999998873
Q ss_pred eeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCC--eEEEEE
Q 039428 238 EEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYP--SARLVE 279 (335)
Q Consensus 238 ~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~--~~~v~~ 279 (335)
....+.............+++.++|+++++....+ .++.++
T Consensus 324 -~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 324 -QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp -EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred -eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 33333322211011235789999998666644333 444444
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.9e-05 Score=70.36 Aligned_cols=206 Identities=11% Similarity=0.063 Sum_probs=115.3
Q ss_pred eeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEe-cCC--------
Q 039428 53 TAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFT-DVL-------- 123 (335)
Q Consensus 53 gia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~-D~~-------- 123 (335)
+++|+|+|+.+++...++.|+++|..+++ .. .+...+... .......+++ +++++++.. +..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~-----~~--~~~~~~~~~-~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~ 155 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLE-----EN--VVYQVPAEW-VGYGTWVANS-DCTKLVGIEIRREDWVPLTDW 155 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCC-----EE--EEEECCTTE-EEEEEEEECT-TSSEEEEEEEEGGGCCCCCSH
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCc-----ce--eeeechhhc-ccccceeECC-CCCeeccccccCccccccccc
Confidence 67999999988777667899999965444 11 233333210 0011223465 566655321 000
Q ss_pred --------CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCc-E-EEEeCC----CCeEEEEccCCcEEE
Q 039428 124 --------GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGN-A-YVTDVV----SSKIWKVGVEGQLLS 188 (335)
Q Consensus 124 --------~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~-l-yV~d~~----~~~I~~~d~~g~~~~ 188 (335)
......|+++|+++++....... .....+++++| ||+ + |+++.. ..+|+.++.+++..+
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~ 229 (388)
T 3pe7_A 156 KKFHEFYFTKPCCRLMRVDLKTGESTVILQE------NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR 229 (388)
T ss_dssp HHHHHHGGGCCCEEEEEEETTTCCEEEEEEE------SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE
T ss_pred chhhhhhccCCcceEEEEECCCCceEEeecC------CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE
Confidence 01115799999998876543322 23456789999 886 4 444322 458999998876544
Q ss_pred EecCCccccccccccccccCeEEEccCC-eE-EEEECCCC---EEEEEeCCCCceeEEEE-eccCC-cCCCCCCeEEEcC
Q 039428 189 IIRSPLFTAKEWYKNVFGLNGIVYHPDG-FL-IVIHMCSG---NLFKIDIRKEEEEVKLI-ELRGG-SSLSLGDGLALLS 261 (335)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~L-yvad~~~~---~v~~~d~~~~~~~~~~~-~~~g~-~~~~~pdGia~d~ 261 (335)
.+.... .......++++||| .| |+++.... +|+++|+++++ .+.+ ...+. .....++++++.+
T Consensus 230 ~l~~~~--------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~~~~~~~sp 299 (388)
T 3pe7_A 230 KVKTHA--------EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE--NRQLTSMPACSHLMSNYDGSLMVG 299 (388)
T ss_dssp ESCCCC--------TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC--EEEEEEECCEEEEEECTTSSEEEE
T ss_pred EeeeCC--------CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc--eEEEEcCCCceeeeecCCCCeEcc
Confidence 321100 00124467899999 56 55554333 49999999873 3333 22210 0012367888888
Q ss_pred CCc-EEEEe--------cCCCeEEEEEcCCC
Q 039428 262 PTK-LVVAG--------NPYPSARLVESSDG 283 (335)
Q Consensus 262 ~g~-l~va~--------~~~~~~~v~~~~~~ 283 (335)
+|+ |+++. .+...+.+++...+
T Consensus 300 dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 300 DGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EECCC------------CCCCEEEEEETTTT
T ss_pred CCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 885 44331 22346777776544
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.55 E-value=0.00013 Score=66.27 Aligned_cols=209 Identities=11% Similarity=-0.022 Sum_probs=129.7
Q ss_pred cCCCcceeeeEE-----cC-CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEE
Q 039428 45 HSPSFLCETAKW-----DD-VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVA 118 (335)
Q Consensus 45 ~~~~~~pegia~-----d~-~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~ 118 (335)
.+....-.++++ .+ ++++++++..++.|..||..+...... ... ......+.. .....+++++ ++.+.++
T Consensus 18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-~~~-~~~~l~~h~-~~V~~~~~~~-~~~~l~s 93 (343)
T 2xzm_R 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-FGI-PHKALTGHN-HFVSDLALSQ-ENCFAIS 93 (343)
T ss_dssp ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-SEE-EEEEECCCS-SCEEEEEECS-STTEEEE
T ss_pred ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-ccc-ccchhccCC-CceEEEEECC-CCCEEEE
Confidence 343344578888 66 788877778889999998543220000 000 011111111 2467899997 5655554
Q ss_pred EecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccc
Q 039428 119 FTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAK 198 (335)
Q Consensus 119 ~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~ 198 (335)
.... ..|..||.++++....... . ....+.+++.|+|+..++.+..+.|..+|..++....... ..
T Consensus 94 ~s~D-----~~v~lwd~~~~~~~~~~~~----h-~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~-- 159 (343)
T 2xzm_R 94 SSWD-----KTLRLWDLRTGTTYKRFVG----H-QSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAE--KE-- 159 (343)
T ss_dssp EETT-----SEEEEEETTSSCEEEEEEC----C-CSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCT--TT--
T ss_pred EcCC-----CcEEEEECCCCcEEEEEcC----C-CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeec--cc--
Confidence 2211 4699999998876533221 1 3456789999999988888888999999987654432110 00
Q ss_pred cccccccccCeEEEccCC----------eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 199 EWYKNVFGLNGIVYHPDG----------FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg----------~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
........++++|++ .++++-..++.|..+|.... ....+.... .....+++.++|+++++
T Consensus 160 ---~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~h~----~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 160 ---NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ--IRYTFKAHE----SNVNHLSISPNGKYIAT 230 (343)
T ss_dssp ---SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE--EEEEEECCS----SCEEEEEECTTSSEEEE
T ss_pred ---CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCc--eeEEEcCcc----ccceEEEECCCCCEEEE
Confidence 011235678888875 56777778899999995543 333343221 23578999999988877
Q ss_pred ecCCCeEEEEEc
Q 039428 269 GNPYPSARLVES 280 (335)
Q Consensus 269 ~~~~~~~~v~~~ 280 (335)
....+.+++.+.
T Consensus 231 gs~dg~v~iwd~ 242 (343)
T 2xzm_R 231 GGKDKKLLIWDI 242 (343)
T ss_dssp EETTCEEEEEES
T ss_pred EcCCCeEEEEEC
Confidence 665577888876
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=5.2e-05 Score=75.70 Aligned_cols=203 Identities=9% Similarity=0.003 Sum_probs=114.5
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.+.+++|+|+ +.++++ .++.|+.+|..+++ .. .+.... .....++++|++..|.. ..| ..
T Consensus 83 ~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~-----~~--~l~~~~----~~~~~~~~SpdG~~la~-~~~------~~ 142 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLF-TQGGLVGFDMLARK-----VT--YLFDTN----EETASLDFSPVGDRVAY-VRN------HN 142 (706)
T ss_dssp CCEEEEETTT-TEEEEE-ETTEEEEEETTTTE-----EE--EEECCT----TCCTTCEECTTSSEEEE-EET------TE
T ss_pred CceeEEECCC-CeEEEE-ECCEEEEEECCCCc-----eE--EccCCc----ccccCCcCCCCCCEEEE-EEC------Ce
Confidence 4678999999 555554 35899999965443 11 122111 24567899984444444 333 35
Q ss_pred EEEEECCC-----CeEEEEeecCCC---------ccCCCCCCceeECCCCc-EEEEe-----------------------
Q 039428 130 LAAYDLST-----WKRLFLTQLSGK---------SEEKSTADDIAVDAEGN-AYVTD----------------------- 171 (335)
Q Consensus 130 v~~~d~~~-----~~~~~~~~~~~~---------~~~~~~p~~~~vd~~G~-lyV~d----------------------- 171 (335)
|+.+|.++ ++.......... .+.+..+.+++++|||+ ++++.
T Consensus 143 i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~ 222 (706)
T 2z3z_A 143 LYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKP 222 (706)
T ss_dssp EEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEE
T ss_pred EEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEE
Confidence 99999987 755422111100 01123368999999997 44443
Q ss_pred ---------CCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCC----CEEEEEeCCCCc
Q 039428 172 ---------VVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCS----GNLFKIDIRKEE 237 (335)
Q Consensus 172 ---------~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~----~~v~~~d~~~~~ 237 (335)
.....|+++|.++.....+... . .....+..++++||| .|+++.... .+|+.+|+.+++
T Consensus 223 ~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~--~-----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~ 295 (706)
T 2z3z_A 223 LYYPMAGTPSHHVTVGIYHLATGKTVYLQTG--E-----PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR 295 (706)
T ss_dssp ECCCBTTSCCCEEEEEEEETTTTEEEECCCC--S-----CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC
T ss_pred eeCCCCCCCCCeeEEEEEECCCCceEeeccC--C-----CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc
Confidence 1336788999876654422110 0 011236789999999 577754332 389999998762
Q ss_pred eeEEEEeccCCcCCCCCCeEEEcC--CCcEEEEecCC--CeEEEEE
Q 039428 238 EEVKLIELRGGSSLSLGDGLALLS--PTKLVVAGNPY--PSARLVE 279 (335)
Q Consensus 238 ~~~~~~~~~g~~~~~~pdGia~d~--~g~l~va~~~~--~~~~v~~ 279 (335)
...................+++.+ +|+++++.... ..++.++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 296 FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred eeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 122222211111111236789998 88755553322 3444444
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-05 Score=71.77 Aligned_cols=217 Identities=12% Similarity=0.071 Sum_probs=131.7
Q ss_pred cCCCcceeeeEEcC-CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeec----CCcCCCCcceEEEeCCCCeEEEEE
Q 039428 45 HSPSFLCETAKWDD-VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKE----DDVVGNATMGIAVDRPRNRLLVAF 119 (335)
Q Consensus 45 ~~~~~~pegia~d~-~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~----~~~~~~~p~Gi~~d~~~g~l~v~~ 119 (335)
.+......+++|+| +++.++++..++.|..||..++..... ......... +.........+++.+.+++++++.
T Consensus 40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY-YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC-EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce-EeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 33344568999999 999888888899999999654442100 000000000 000113568899987455455542
Q ss_pred ecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC---CCcEEEEeCCCCeEEEEccCCc-EEEEecCCcc
Q 039428 120 TDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA---EGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLF 195 (335)
Q Consensus 120 ~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~---~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~ 195 (335)
... +.|..||.++++....... ......+.+.+ ++.++++....+.|..+|.... ....+..
T Consensus 119 ~~d-----~~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--- 184 (408)
T 4a11_B 119 SFD-----KTLKVWDTNTLQTADVFNF------EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG--- 184 (408)
T ss_dssp ETT-----SEEEEEETTTTEEEEEEEC------SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC---
T ss_pred eCC-----CeEEEeeCCCCccceeccC------CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC---
Confidence 211 3699999999877654443 12344566666 4557777788889999997643 3222211
Q ss_pred ccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccC-----------CcCCCCCCeEEEcCCC
Q 039428 196 TAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRG-----------GSSLSLGDGLALLSPT 263 (335)
Q Consensus 196 ~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g-----------~~~~~~pdGia~d~~g 263 (335)
.......++++|++ +++++-..++.|..+|+...+.....+.... .........+++.++|
T Consensus 185 -------~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (408)
T 4a11_B 185 -------HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG 257 (408)
T ss_dssp -------CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS
T ss_pred -------CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC
Confidence 11236889999998 5787877889999999976521222221100 0001335688999999
Q ss_pred cEEEEecCCCeEEEEEcCCC
Q 039428 264 KLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 264 ~l~va~~~~~~~~v~~~~~~ 283 (335)
.++++....+.+++.+...+
T Consensus 258 ~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 258 LHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp SEEEEEETTSCEEEEETTTC
T ss_pred CEEEEecCCCeEEEEECCCC
Confidence 87766544467888886543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1e-05 Score=72.74 Aligned_cols=232 Identities=8% Similarity=-0.004 Sum_probs=136.1
Q ss_pred cceeeeEEcCCCC-EEEEEecCCeEEEEEC-CCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 49 FLCETAKWDDVGR-RFLVSFLDGGVGQVLV-PDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 49 ~~pegia~d~~g~-~~~~~~~~~~I~~~d~-~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
....+++|+++++ .++++..++.|..||. .++. .. .+..... ......+++++ ++.++.+..|
T Consensus 57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-----~~---~~~~~~~-~~~v~~l~~~~-~~~l~s~~~d----- 121 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS-----FQ---ALTNNEA-NLGICRICKYG-DDKLIAASWD----- 121 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS-----EE---ECBSCCC-CSCEEEEEEET-TTEEEEEETT-----
T ss_pred CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc-----eE---eccccCC-CCceEEEEeCC-CCEEEEEcCC-----
Confidence 3467899999999 7777788899999985 4443 11 2211001 13567899997 5656554332
Q ss_pred cceEEEEECCC---------CeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cE--EEEecCCc
Q 039428 127 YSALAAYDLST---------WKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QL--LSIIRSPL 194 (335)
Q Consensus 127 ~~~v~~~d~~~---------~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~--~~~~~~~~ 194 (335)
..|..||.++ ++... .+. ....+..+++++++ +++ ....+.|..+|... .. ......
T Consensus 122 -~~i~iwd~~~~~~~~~~~~~~~~~--~~~----~~~~v~~~~~~~~~-l~~-~~~d~~i~i~d~~~~~~~~~~~~~~-- 190 (342)
T 1yfq_A 122 -GLIEVIDPRNYGDGVIAVKNLNSN--NTK----VKNKIFTMDTNSSR-LIV-GMNNSQVQWFRLPLCEDDNGTIEES-- 190 (342)
T ss_dssp -SEEEEECHHHHTTBCEEEEESCSS--SSS----SCCCEEEEEECSSE-EEE-EESTTEEEEEESSCCTTCCCEEEEC--
T ss_pred -CeEEEEcccccccccccccCCeee--EEe----eCCceEEEEecCCc-EEE-EeCCCeEEEEECCccccccceeeec--
Confidence 3588998765 32211 111 13456789999888 554 46678899999875 21 111100
Q ss_pred cccccccccccccCeEEEcc-CCeEEEEECCCCEEEEEeCCCC------ceeEEEEeccCCc-----CCCCCCeEEEcCC
Q 039428 195 FTAKEWYKNVFGLNGIVYHP-DGFLIVIHMCSGNLFKIDIRKE------EEEVKLIELRGGS-----SLSLGDGLALLSP 262 (335)
Q Consensus 195 ~~~~~~~~~~~~p~Gia~~~-dg~Lyvad~~~~~v~~~d~~~~------~~~~~~~~~~g~~-----~~~~pdGia~d~~ 262 (335)
........++++| ++.++++-..++.|..++.+.. + ....+...... .......+++.++
T Consensus 191 -------~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 262 (342)
T 1yfq_A 191 -------GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS-KRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262 (342)
T ss_dssp -------SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT-TCEEEECCCCCTTCCSSCCCEEEEEECTT
T ss_pred -------CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc-cceeeecccccccccccceeEEEEEEcCC
Confidence 0122478999999 9977777777888887666543 2 33444422100 0113568999999
Q ss_pred CcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEeCCeEE-EEeccCC
Q 039428 263 TKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVKDGRVY-LSHLLGL 319 (335)
Q Consensus 263 g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~~g~ly-V~~~~~~ 319 (335)
++++++....+.+++.+...+ +....+........++++ .++++. .+...+.
T Consensus 263 ~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~h~~~v~~~~-~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 263 HKFLYTAGSDGIISCWNLQTR----KKIKNFAKFNEDSVVKIA-CSDNILCLATSDDT 315 (342)
T ss_dssp TCCEEEEETTSCEEEEETTTT----EEEEECCCCSSSEEEEEE-ECSSEEEEEEECTH
T ss_pred CCEEEEecCCceEEEEcCccH----hHhhhhhcccCCCceEec-CCCCeEEEEecCCc
Confidence 886666554467888887654 223333322012234566 655544 4444443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.52 E-value=0.00048 Score=61.39 Aligned_cols=211 Identities=9% Similarity=-0.017 Sum_probs=130.7
Q ss_pred EcCCCcceeeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 44 YHSPSFLCETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 44 ~~~~~~~pegia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
+.+-.-.-.+++|+|+ +++++.+..+++|..||....... ... ......+. ......+++++ +++++++.. .
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~---~~~-~~~~l~~h-~~~V~~~~~s~-dg~~l~s~~-~ 106 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN---YGI-PQRALRGH-SHFVSDVVISS-DGQFALSGS-W 106 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC---SEE-EEEEECCC-SSCEEEEEECT-TSSEEEEEE-T
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc---cce-eeEEEeCC-CCCEEEEEECC-CCCEEEEEc-c
Confidence 4444445689999998 566666688899999985433310 010 01111111 13567899997 565555322 2
Q ss_pred CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccc
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~ 202 (335)
. ..|..++............. ........+.++++.+++.+..+.+..+|..+..........
T Consensus 107 d----~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~-------- 169 (340)
T 4aow_A 107 D----GTLRLWDLTTGTTTRRFVGH-----TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES-------- 169 (340)
T ss_dssp T----SEEEEEETTTTEEEEEEECC-----SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSS--------
T ss_pred c----ccceEEeecccceeeeecCC-----CCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEecc--------
Confidence 1 35888998877665332221 234456777888887787778888999988765443221110
Q ss_pred cccccCeEEEccCC--eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 203 NVFGLNGIVYHPDG--FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 203 ~~~~p~Gia~~~dg--~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
.......+++++++ .++++-...+.|..+|....+ ....+. + . -.....+++.++|+++++....+.+++.+.
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~--~-h-~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~ 244 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-LKTNHI--G-H-TGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-EEEEEC--C-C-SSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-eeeEec--C-C-CCcEEEEEECCCCCEEEEEeCCCeEEEEEe
Confidence 11235677888765 566777778889999998873 333332 2 1 123568999999988887655577888877
Q ss_pred CCC
Q 039428 281 SDG 283 (335)
Q Consensus 281 ~~~ 283 (335)
...
T Consensus 245 ~~~ 247 (340)
T 4aow_A 245 NEG 247 (340)
T ss_dssp TTT
T ss_pred ccC
Confidence 654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.8e-05 Score=72.40 Aligned_cols=197 Identities=12% Similarity=0.138 Sum_probs=112.4
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCC---CC----eEEEEEecCC--CCcc
Q 039428 57 DDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRP---RN----RLLVAFTDVL--GNKY 127 (335)
Q Consensus 57 d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~---~g----~l~v~~~D~~--~~~~ 127 (335)
+|...+++.+...+.|+++|. +|+ ++. .+ +. ..++++.+-+. +| .+|+ .+.. .
T Consensus 37 dp~~s~ii~t~k~~gL~Vydl-~G~----~l~---~~--~~---g~~nnVD~r~~~~l~g~~~dla~a--s~R~~~~--- 98 (355)
T 3amr_A 37 TPQNSKLITTNKKSGLVVYSL-DGK----MLH---SY--NT---GKLNNVDIRYDFPLNGKKVDIAAA--SNRSEGK--- 98 (355)
T ss_dssp CGGGCEEEEEETTTEEEEEET-TSC----EEE---EE--CC---SCEEEEEEEEEEEETTEEEEEEEE--EECSTTC---
T ss_pred CCCccEEEEEcCCCCEEEEcC-CCc----EEE---Ec--cC---CCcccEEEecccccCCceEeEEEE--eCCCCCC---
Confidence 344566555577789999996 676 122 33 21 25566666431 11 2344 3332 2
Q ss_pred ceEEEE--ECCCCeEEEEeecCCC-ccCCCCCCceeE--CCC-Cc--EEEEeCCCCeEEEEcc----CCcEE-EEecCCc
Q 039428 128 SALAAY--DLSTWKRLFLTQLSGK-SEEKSTADDIAV--DAE-GN--AYVTDVVSSKIWKVGV----EGQLL-SIIRSPL 194 (335)
Q Consensus 128 ~~v~~~--d~~~~~~~~~~~~~~~-~~~~~~p~~~~v--d~~-G~--lyV~d~~~~~I~~~d~----~g~~~-~~~~~~~ 194 (335)
++|..| |++++++........+ +.....|.|++. +++ |. +||++.. +++..++. +|+.. +... .
T Consensus 99 n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR--~ 175 (355)
T 3amr_A 99 NTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVR--A 175 (355)
T ss_dssp CEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEE--E
T ss_pred CeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEE--E
Confidence 346555 7777765432121001 122478999999 875 54 7777765 67766443 23221 1111 1
Q ss_pred cccccccccccccCeEEEccC-CeEEEEECCCCEEEEEeCCCCce-eEEEEec-cCCcCCCCCCeEEEc--CC--CcEEE
Q 039428 195 FTAKEWYKNVFGLNGIVYHPD-GFLIVIHMCSGNLFKIDIRKEEE-EVKLIEL-RGGSSLSLGDGLALL--SP--TKLVV 267 (335)
Q Consensus 195 ~~~~~~~~~~~~p~Gia~~~d-g~Lyvad~~~~~v~~~d~~~~~~-~~~~~~~-~g~~~~~~pdGia~d--~~--g~l~v 267 (335)
|.. ...+.|+++|++ |+||+++...+ ||+|+.+...+ ..+.+.. .+......+.||++. ++ |.|++
T Consensus 176 f~l------gsq~EgcvvDd~~g~Lyv~eEd~G-Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLiv 248 (355)
T 3amr_A 176 FKM------NSQTEGMAADDEYGRLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMA 248 (355)
T ss_dssp EEC------SSCEEEEEEETTTTEEEEEETTTE-EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEE
T ss_pred ecC------CCCcceEEEcCCCCeEEEecccce-EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEE
Confidence 221 135889999985 49999998866 99999663310 1223322 222222468999995 33 35888
Q ss_pred EecCCCeEEEEEcC
Q 039428 268 AGNPYPSARLVESS 281 (335)
Q Consensus 268 a~~~~~~~~v~~~~ 281 (335)
++.+.+...|++..
T Consensus 249 SsQG~~s~~Vydr~ 262 (355)
T 3amr_A 249 SSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEGGGTEEEEEESS
T ss_pred EcCCCCEEEEEECC
Confidence 87666788888764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.51 E-value=3.8e-06 Score=82.21 Aligned_cols=188 Identities=12% Similarity=0.029 Sum_probs=107.4
Q ss_pred ceeeeEEcCCCCEEEEEec---C--CeEEEEECC-CCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC
Q 039428 50 LCETAKWDDVGRRFLVSFL---D--GGVGQVLVP-DEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~---~--~~I~~~d~~-~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
...+++|+|+ +++|++.. . ..|+.++.. ++.. . .+...+ .....++.++.+.+++++...
T Consensus 66 ~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~-----~--~l~~~~-----~~~~~~~s~dg~~~~~~s~~~- 131 (582)
T 3o4h_A 66 SVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE-----Q--RLEAVK-----PMRILSGVDTGEAVVFTGATE- 131 (582)
T ss_dssp EECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC-----E--ECTTSC-----SBEEEEEEECSSCEEEEEECS-
T ss_pred ccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcc-----c--cccCCC-----CceeeeeCCCCCeEEEEecCC-
Confidence 4568899998 77776632 2 268888741 3331 1 121111 122345554344444432221
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC----CCCeEEEEccCCcEEEEecCCcccccc
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV----VSSKIWKVGVEGQLLSIIRSPLFTAKE 199 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~----~~~~I~~~d~~g~~~~~~~~~~~~~~~ 199 (335)
..+..||.++++....... .. +.++++|||+..++-+ ....|+++|.++...+.+...
T Consensus 132 ----~~~~l~d~~~g~~~~l~~~------~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~------ 193 (582)
T 3o4h_A 132 ----DRVALYALDGGGLRELARL------PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSG------ 193 (582)
T ss_dssp ----SCEEEEEEETTEEEEEEEE------SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCS------
T ss_pred ----CCceEEEccCCcEEEeecC------CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecC------
Confidence 2255789988876543322 11 7899999998554322 126799999775443332111
Q ss_pred ccccccccCeEEEccCC-eEEEEECCCC--EEEEEeCCCCceeEEEEeccCCcCCCCCCeEE--------EcCCCcEEEE
Q 039428 200 WYKNVFGLNGIVYHPDG-FLIVIHMCSG--NLFKIDIRKEEEEVKLIELRGGSSLSLGDGLA--------LLSPTKLVVA 268 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg-~Lyvad~~~~--~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia--------~d~~g~l~va 268 (335)
....+.++++||| .|+.++ ..+ +|+++|++++ ....+. + . ...+.+++ +.+||.++++
T Consensus 194 ----~~~~~~~~~SpDG~~l~~~~-~~~~~~i~~~d~~~~--~~~~~~--~-~-~~~~~~~~~~~~~~~~~spdg~~~~~ 262 (582)
T 3o4h_A 194 ----EGSFSSASISPGMKVTAGLE-TAREARLVTVDPRDG--SVEDLE--L-P-SKDFSSYRPTAITWLGYLPDGRLAVV 262 (582)
T ss_dssp ----SCEEEEEEECTTSCEEEEEE-CSSCEEEEEECTTTC--CEEECC--C-S-CSHHHHHCCSEEEEEEECTTSCEEEE
T ss_pred ----CCccccceECCCCCEEEEcc-CCCeeEEEEEcCCCC--cEEEcc--C-C-CcChhhhhhccccceeEcCCCcEEEE
Confidence 1125789999999 566444 455 8999999987 334222 2 1 11233455 9999988887
Q ss_pred ecCCCeEEEEEc
Q 039428 269 GNPYPSARLVES 280 (335)
Q Consensus 269 ~~~~~~~~v~~~ 280 (335)
....+.+++...
T Consensus 263 ~~~~g~~~l~~~ 274 (582)
T 3o4h_A 263 ARREGRSAVFID 274 (582)
T ss_dssp EEETTEEEEEET
T ss_pred EEcCCcEEEEEE
Confidence 543456666665
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.9e-05 Score=78.11 Aligned_cols=210 Identities=12% Similarity=0.020 Sum_probs=134.0
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.....+++|+|+|+++.++..++.|..|+..+.+ . ...... ......+++.+ +..|..+..|
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~-----~----~~~~~~--~~~V~~l~fsp-g~~L~S~s~D------ 78 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE-----V----VIKLED--RSAIKEMRFVK-GIYLVVINAK------ 78 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCE-----E----EEECSS--CCCEEEEEEET-TTEEEEEETT------
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE-----E----EEEcCC--CCCEEEEEEcC-CCEEEEEECc------
Confidence 3346899999999988888889999999853222 1 111221 13568999997 4434443222
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccc--cccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTA--KEWYKNVF 205 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~--~~~~~~~~ 205 (335)
+.|..||.++++....... ....+.++++|+|+..++....+.|..+|.++.....+..+.+.. ........
T Consensus 79 ~~v~lWd~~~~~~~~~~~~------~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~ 152 (902)
T 2oaj_A 79 DTVYVLSLYSQKVLTTVFV------PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS 152 (902)
T ss_dssp CEEEEEETTTCSEEEEEEC------SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC
T ss_pred CeEEEEECCCCcEEEEEcC------CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCC
Confidence 4699999998876643322 234678999999987777788899999998765432111000000 00001123
Q ss_pred ccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEecc---CC-----------cCCCCCCeEEEcCCCcEEEEec
Q 039428 206 GLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELR---GG-----------SSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~---g~-----------~~~~~pdGia~d~~g~l~va~~ 270 (335)
....++++|++ .++++-..++.| .+|+...+ ....+... +. ..-.....+++.++|.++++..
T Consensus 153 ~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs 230 (902)
T 2oaj_A 153 PIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE-IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH 230 (902)
T ss_dssp CCCEEEEETTEEEEEEEECSSCEE-EEETTTTE-EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred CeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc-eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence 47899999975 666677788899 99998873 34444321 00 0002256899999998888865
Q ss_pred CCCeEEEEEcCCC
Q 039428 271 PYPSARLVESSDG 283 (335)
Q Consensus 271 ~~~~~~v~~~~~~ 283 (335)
..+.+++.+...+
T Consensus 231 ~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 231 EDNSLVFWDANSG 243 (902)
T ss_dssp TTCCEEEEETTTC
T ss_pred CCCeEEEEECCCC
Confidence 5577888887654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.2e-06 Score=74.87 Aligned_cols=204 Identities=13% Similarity=0.082 Sum_probs=119.4
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEE----EeCCCCeEEEEEecCCCCccceE
Q 039428 55 KWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIA----VDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 55 a~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~----~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
+|+++++.++++..++.|..||...+..+ +. .+....+........++ +++ +++++++..+. ..|
T Consensus 124 ~~s~~~~~l~~~~~d~~i~vwd~~~~~~~---~~--~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d-----~~i 192 (357)
T 3i2n_A 124 GIGEGAPEIVTGSRDGTVKVWDPRQKDDP---VA--NMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDN-----GDI 192 (357)
T ss_dssp GCC-CCCEEEEEETTSCEEEECTTSCSSC---SE--EECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETT-----SEE
T ss_pred ccCCCccEEEEEeCCCeEEEEeCCCCCCc---ce--eccccCCCCCCceEEEEEEeccCC-CCCEEEEEccC-----CeE
Confidence 45788988888888999999986544311 11 12111111112345566 455 45555543221 369
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECC---CCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA---EGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~---~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
..||.++++....... ......++++| +++.+++....+.|..+|....... ..+............
T Consensus 193 ~i~d~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~~~v 262 (357)
T 3i2n_A 193 KLFDLRNMALRWETNI------KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT----KGFASVSEKAHKSTV 262 (357)
T ss_dssp EEEETTTTEEEEEEEC------SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT----TEEEEEEEECCSSCE
T ss_pred EEEECccCceeeecCC------CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc----cceeeeccCCCcCCE
Confidence 9999999877543322 34567899999 8887777788899999987532210 000000000122347
Q ss_pred CeEEEccCCe-EEEEECCCCEEEEEeCCCCcee---------------EEEE-eccCCcCCCCCCeEEEcCCCcEEE-Ee
Q 039428 208 NGIVYHPDGF-LIVIHMCSGNLFKIDIRKEEEE---------------VKLI-ELRGGSSLSLGDGLALLSPTKLVV-AG 269 (335)
Q Consensus 208 ~Gia~~~dg~-Lyvad~~~~~v~~~d~~~~~~~---------------~~~~-~~~g~~~~~~pdGia~d~~g~l~v-a~ 269 (335)
..++++|++. ++++-..++.|..+|+...... ...+ ...+ . -.....+++.++|.+++ +.
T Consensus 263 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~-~~~v~~~~~s~~~~~l~~s~ 340 (357)
T 3i2n_A 263 WQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL-S-TQPISSLDWSPDKRGLCVCS 340 (357)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC-C-SSCEEEEEECSSSTTEEEEE
T ss_pred EEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc-C-CCCeeEEEEcCCCCeEEEEe
Confidence 8899999995 7888888898888887653101 0111 1112 1 12357899999986554 54
Q ss_pred cCCCeEEEEEcC
Q 039428 270 NPYPSARLVESS 281 (335)
Q Consensus 270 ~~~~~~~v~~~~ 281 (335)
...+.+++.+..
T Consensus 341 ~~d~~i~iw~~~ 352 (357)
T 3i2n_A 341 SFDQTVRVLIVT 352 (357)
T ss_dssp ETTSEEEEEEEC
T ss_pred cCCCcEEEEECC
Confidence 444677777653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-05 Score=75.58 Aligned_cols=164 Identities=10% Similarity=0.041 Sum_probs=101.6
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECC--CCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEE
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLS--TWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWK 179 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~ 179 (335)
....+++++++..|+++. ... +.|..||.. +++........ .. ...++.++++|+|+.+++....+.|+.
T Consensus 104 ~v~~~~~s~d~~~l~~~~-~~d----g~v~iwd~~~~~~~~~~~~~~~--~~-~~~v~~~~~sp~~~~l~~~~~~g~v~~ 175 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACA-DSD----KSLLVFDVDKTSKNVLKLRKRF--CF-SKRPNAISIAEDDTTVIIADKFGDVYS 175 (450)
T ss_dssp CEEEEEECTTSSEEEEEE-GGG----TEEEEEEECSSSSSCEEEEEEE--EC-SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceEEEEEcCCCCEEEEEE-CCC----CeEEEEECcCCCCceeeeeecc--cC-CCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence 367899998444444543 221 358889987 66544222110 01 345678999999986666667889999
Q ss_pred EccCCcEEEEecCCccccccccccccccCeEEEccC---CeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCe
Q 039428 180 VGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD---GFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDG 256 (335)
Q Consensus 180 ~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d---g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdG 256 (335)
++.............+. ......+.++++|+ +.++++-..++.|..+|+..++ ....+. .+ . ......
T Consensus 176 ~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~-~~-h-~~~v~~ 246 (450)
T 2vdu_B 176 IDINSIPEEKFTQEPIL-----GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF-IVDKWL-FG-H-KHFVSS 246 (450)
T ss_dssp EETTSCCCSSCCCCCSE-----ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT-CEEEEC-CC-C-SSCEEE
T ss_pred EecCCcccccccceeee-----cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc-eeeeee-cC-C-CCceEE
Confidence 98653221100000111 11234788999999 8666666678889999988763 343332 12 1 234678
Q ss_pred EEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 257 LALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 257 ia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
+++. +|.++++....+.+++.+...+
T Consensus 247 ~~~s-d~~~l~s~~~d~~v~vwd~~~~ 272 (450)
T 2vdu_B 247 ICCG-KDYLLLSAGGDDKIFAWDWKTG 272 (450)
T ss_dssp EEEC-STTEEEEEESSSEEEEEETTTC
T ss_pred EEEC-CCCEEEEEeCCCeEEEEECCCC
Confidence 9999 8887777555578888887655
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.8e-05 Score=71.58 Aligned_cols=215 Identities=12% Similarity=0.089 Sum_probs=117.1
Q ss_pred CEEEEEecCCeEEEEECCCCCCCcceeeeeEEee-cCC--cCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCC
Q 039428 61 RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDD--VVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLST 137 (335)
Q Consensus 61 ~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~--~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~ 137 (335)
+.+|+...++.|+.+|..+|+. + |.. .+. ..........++ ++.+|+...+ ..|+.+|+++
T Consensus 144 ~~v~v~~~~g~l~~~d~~tG~~----~----W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~------g~l~~~d~~t 207 (376)
T 3q7m_A 144 GLVLIHTSNGQLQALNEADGAV----K----WTVNLDMPSLSLRGESAPTTA--FGAAVVGGDN------GRVSAVLMEQ 207 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCE----E----EEEECCC-----CCCCCCEEE--TTEEEECCTT------TEEEEEETTT
T ss_pred CEEEEEcCCCeEEEEECCCCcE----E----EEEeCCCCceeecCCCCcEEE--CCEEEEEcCC------CEEEEEECCC
Confidence 3556665678999999766651 1 211 111 000011334454 5889984221 3599999999
Q ss_pred CeEEEEeecCCCccC--CC----CCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeE
Q 039428 138 WKRLFLTQLSGKSEE--KS----TADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 138 ~~~~~~~~~~~~~~~--~~----~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
|+..+......+... .. ......+ .+|++|++. ..+.|+.+|++ |+...... . ....++
T Consensus 208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~-~~g~l~~~d~~tG~~~w~~~---~---------~~~~~~ 273 (376)
T 3q7m_A 208 GQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFALA-YNGNLTALDLRSGQIMWKRE---L---------GSVNDF 273 (376)
T ss_dssp CCEEEEEECCC-----------CCCCCCEE-ETTEEEEEC-TTSCEEEEETTTCCEEEEEC---C---------CCEEEE
T ss_pred CcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEEe-cCcEEEEEECCCCcEEeecc---C---------CCCCCc
Confidence 988876654321100 00 0011122 357899874 56789999985 55543211 0 123456
Q ss_pred EEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEe
Q 039428 211 VYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVV 290 (335)
Q Consensus 211 a~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~ 290 (335)
+++ +++||++.. ++.|+.+|+++++ ........+.. ......+. ++.+|+... .+.+.+++..++- ..
T Consensus 274 ~~~-~~~l~~~~~-~g~l~~~d~~tG~-~~w~~~~~~~~---~~~~~~~~-~~~l~v~~~-~g~l~~~d~~tG~----~~ 341 (376)
T 3q7m_A 274 IVD-GNRIYLVDQ-NDRVMALTIDGGV-TLWTQSDLLHR---LLTSPVLY-NGNLVVGDS-EGYLHWINVEDGR----FV 341 (376)
T ss_dssp EEE-TTEEEEEET-TCCEEEEETTTCC-EEEEECTTTTS---CCCCCEEE-TTEEEEECT-TSEEEEEETTTCC----EE
T ss_pred eEE-CCEEEEEcC-CCeEEEEECCCCc-EEEeecccCCC---cccCCEEE-CCEEEEEeC-CCeEEEEECCCCc----EE
Confidence 665 779999874 6679999998874 32223211111 12233443 578999865 2568888876652 22
Q ss_pred eeecCCCCCcceEEEEeCCeEEEEecc
Q 039428 291 AKFNGPTHRVATAATVKDGRVYLSHLL 317 (335)
Q Consensus 291 ~~~~~p~~~~Pt~va~~~g~lyV~~~~ 317 (335)
..+..+.........+.+++|||....
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~v~~~~ 368 (376)
T 3q7m_A 342 AQQKVDSSGFQTEPVAADGKLLIQAKD 368 (376)
T ss_dssp EEEECCTTCBCSCCEEETTEEEEEBTT
T ss_pred EEEecCCCcceeCCEEECCEEEEEeCC
Confidence 222221111112344568999996543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-05 Score=79.69 Aligned_cols=189 Identities=5% Similarity=0.064 Sum_probs=110.8
Q ss_pred eeeeEEcCCCCEEEEE-ecCC--------------------------------eEEEEECCC-CCCCcceeeeeEEeecC
Q 039428 51 CETAKWDDVGRRFLVS-FLDG--------------------------------GVGQVLVPD-EYSPGTVLEEVKLVKED 96 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~~~--------------------------------~I~~~d~~~-g~~~~~v~~~~~~~~~~ 96 (335)
+.+++|+|+|+.+++. ...+ +|+.+|..+ ++ .. .+...
T Consensus 211 ~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-----~~---~~~~~ 282 (741)
T 2ecf_A 211 HTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ-----TQ---WIDLG 282 (741)
T ss_dssp CCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC-----CE---EECCC
T ss_pred ccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc-----eE---EecCC
Confidence 4679999999976666 3221 788888644 43 11 11111
Q ss_pred CcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC--
Q 039428 97 DVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS-- 174 (335)
Q Consensus 97 ~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~-- 174 (335)
.........+++ +++..|++...+.... ...|+.+|.++++............ ....+.+++.+||+++++....
T Consensus 283 ~~~~~~~~~~~~-pDg~~l~~~~~~~~~~-~~~i~~~d~~~g~~~~~~~~~~~~~-~~~~~~~~~spdg~~~~~~~~~g~ 359 (741)
T 2ecf_A 283 KEQDIYLARVNW-RDPQHLSFQRQSRDQK-KLDLVEVTLASNQQRVLAHETSPTW-VPLHNSLRFLDDGSILWSSERTGF 359 (741)
T ss_dssp SCSSEEEEEEEE-EETTEEEEEEEETTSS-EEEEEEEETTTCCEEEEEEEECSSC-CCCCSCCEECTTSCEEEEECTTSS
T ss_pred CCcceEEEEEEe-CCCCEEEEEEecccCC-eEEEEEEECCCCceEEEEEcCCCCc-CCcCCceEECCCCeEEEEecCCCc
Confidence 001124567888 8556666654333222 2579999999887653332211100 1134689999999876665443
Q ss_pred CeEEEEccCCcEEEEecCCccccccccccccccCeE-EEccCC-eEEEEECCC----CEEEEEeCCCCceeEEEEeccCC
Q 039428 175 SKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGI-VYHPDG-FLIVIHMCS----GNLFKIDIRKEEEEVKLIELRGG 248 (335)
Q Consensus 175 ~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gi-a~~~dg-~Lyvad~~~----~~v~~~d~~~~~~~~~~~~~~g~ 248 (335)
..||+++.+++ ...+... ......+ +++||| .||++.... .+||+++.++. ..+.+...
T Consensus 360 ~~l~~~~~~~~-~~~l~~~----------~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~--~~~~l~~~-- 424 (741)
T 2ecf_A 360 QHLYRIDSKGK-AAALTHG----------NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG--QPQRLSKA-- 424 (741)
T ss_dssp CEEEEECSSSC-EEESCCS----------SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC--CCEECCCS--
T ss_pred cEEEEEcCCCC-eeeeeec----------ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC--CeeecccC--
Confidence 48999998877 4432211 1123455 599999 677666543 36888887665 33444321
Q ss_pred cCCCCCCeEEEcCCCcEEEE
Q 039428 249 SSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 249 ~~~~~pdGia~d~~g~l~va 268 (335)
.....+++.++|+.++.
T Consensus 425 ---~~~~~~~~spdg~~l~~ 441 (741)
T 2ecf_A 425 ---PGMHSASFARNASVYVD 441 (741)
T ss_dssp ---CSEEEEEECTTSSEEEE
T ss_pred ---CCceEEEECCCCCEEEE
Confidence 12347888999864444
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.7e-05 Score=70.64 Aligned_cols=209 Identities=7% Similarity=-0.034 Sum_probs=123.8
Q ss_pred cceeeeEEcCC--CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCC-CeEEEEEecCCCC
Q 039428 49 FLCETAKWDDV--GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPR-NRLLVAFTDVLGN 125 (335)
Q Consensus 49 ~~pegia~d~~--g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~-g~l~v~~~D~~~~ 125 (335)
....+++|.++ ++.+++...++.|..||..+++ ... ....... ......+++++.. +.++++....
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----~~~--~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~d--- 124 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-----WSQ--IAVHAVH-SASVNSVQWAPHEYGPLLLVASSD--- 124 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE-----EEE--EEEECCC-SSCEEEEEECCGGGCSEEEEEETT---
T ss_pred CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc-----eeE--eeeecCC-CcceEEEEeCCCCCCCEEEEecCC---
Confidence 34578899877 8888877888999999864443 111 1111111 1356889999741 5444432221
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-------------CCcEEEEeCCCCeEEEEccCCc--EEEEe
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-------------EGNAYVTDVVSSKIWKVGVEGQ--LLSII 190 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-------------~G~lyV~d~~~~~I~~~d~~g~--~~~~~ 190 (335)
..|..||..++.......+.. . ....+.+++.| +++.+++.+..+.|..+|.... .....
T Consensus 125 --~~i~v~d~~~~~~~~~~~~~~--~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 199 (379)
T 3jrp_A 125 --GKVSVVEFKENGTTSPIIIDA--H-AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 199 (379)
T ss_dssp --SEEEEEECCTTSCCCEEEEEC--C-TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred --CcEEEEecCCCCceeeEEecC--C-CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE
Confidence 369999998763221111111 1 23456788888 6888888888889999886532 11111
Q ss_pred cCCccccccccccccccCeEEEccC---CeEEEEECCCCEEEEEeCCCCce-eEEEEeccCCcCCCCCCeEEEcCCCcEE
Q 039428 191 RSPLFTAKEWYKNVFGLNGIVYHPD---GFLIVIHMCSGNLFKIDIRKEEE-EVKLIELRGGSSLSLGDGLALLSPTKLV 266 (335)
Q Consensus 191 ~~~~~~~~~~~~~~~~p~Gia~~~d---g~Lyvad~~~~~v~~~d~~~~~~-~~~~~~~~g~~~~~~pdGia~d~~g~l~ 266 (335)
. .+.. .......++++|+ +.++++-..++.|..+|...... ....+...... ......+++.++|.++
T Consensus 200 ~--~~~~-----h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l 271 (379)
T 3jrp_A 200 S--TLEG-----HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVL 271 (379)
T ss_dssp E--EECC-----CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCE
T ss_pred E--EEec-----ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC-CCcEEEEEEcCCCCEE
Confidence 0 1110 1123779999999 87777777888888888876521 12222111101 2335688999999766
Q ss_pred EEecCCCeEEEEEcC
Q 039428 267 VAGNPYPSARLVESS 281 (335)
Q Consensus 267 va~~~~~~~~v~~~~ 281 (335)
++....+.+++.+..
T Consensus 272 ~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 272 ALSGGDNKVTLWKEN 286 (379)
T ss_dssp EEEESSSSEEEEEEE
T ss_pred EEecCCCcEEEEeCC
Confidence 664434667777765
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=5e-05 Score=69.17 Aligned_cols=207 Identities=10% Similarity=0.051 Sum_probs=121.7
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
...+++|+|+|+.+++...++.|..|+...+. .+....+ .+.. .....++++| +++++++.... ..
T Consensus 63 ~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~-----~~~~~~~--~~h~-~~v~~v~~sp-~~~~l~s~s~D-----~~ 128 (345)
T 3fm0_A 63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDD-----FECVTTL--EGHE-NEVKSVAWAP-SGNLLATCSRD-----KS 128 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEECCC------EEEEEEE--CCCS-SCEEEEEECT-TSSEEEEEETT-----SC
T ss_pred cEEEEEECCCCCEEEEEECCCcEEEEEccCCC-----eEEEEEc--cCCC-CCceEEEEeC-CCCEEEEEECC-----Ce
Confidence 45789999999988888888999888754332 1111112 2111 3568999998 56555542221 35
Q ss_pred EEEEECCCCeE-EEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 130 LAAYDLSTWKR-LFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 130 v~~~d~~~~~~-~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
|..||.+++.. .....+... ....+.+++.|+|+++++.+..+.|..++.......... .+.. ......
T Consensus 129 v~iwd~~~~~~~~~~~~~~~h---~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~--~~~~-----h~~~v~ 198 (345)
T 3fm0_A 129 VWVWEVDEEDEYECVSVLNSH---TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA--TLEG-----HESTVW 198 (345)
T ss_dssp EEEEEECTTSCEEEEEEECCC---CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEE--EECC-----CSSCEE
T ss_pred EEEEECCCCCCeEEEEEecCc---CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEE--EecC-----CCCceE
Confidence 88999876532 211222111 244577999999998888888888888886543211100 0110 112378
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCC---c--------eeEEEE-eccCCcCCCCCCeEEEcCCCcEEEEecCCCeEE
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKE---E--------EEVKLI-ELRGGSSLSLGDGLALLSPTKLVVAGNPYPSAR 276 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~---~--------~~~~~~-~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~ 276 (335)
.++++|+|.++++-..++.|...+.... . .....+ ...+.. -.....+++.+++..+++....+.++
T Consensus 199 ~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~~~d~~i~ 277 (345)
T 3fm0_A 199 SLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH-SRTIYDIAWCQLTGALATACGDDAIR 277 (345)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSC-SSCEEEEEECTTTCCEEEEETTSCEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCC-CCcEEEEEEecCCCEEEEEeCCCeEE
Confidence 9999999977777777777766664221 0 011111 111211 12356788888887666644456788
Q ss_pred EEEcC
Q 039428 277 LVESS 281 (335)
Q Consensus 277 v~~~~ 281 (335)
+.+..
T Consensus 278 vw~~~ 282 (345)
T 3fm0_A 278 VFQED 282 (345)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 77654
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00025 Score=62.81 Aligned_cols=210 Identities=11% Similarity=0.082 Sum_probs=123.5
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCC-CCeEEEEEecCCCCcc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRP-RNRLLVAFTDVLGNKY 127 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~-~g~l~v~~~D~~~~~~ 127 (335)
....+++|+++++.++++..++.|..||..++... ......+.... .....+++.+. +++++++....
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~---~~v~~~~~~~~~d~~~l~s~~~d----- 80 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN---WELSDSWRAHD---SSIVAIDWASPEYGRIIASASYD----- 80 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC---EEEEEEEECCS---SCEEEEEECCGGGCSEEEEEETT-----
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc---ceecceeccCC---CcEEEEEEcCCCCCCEEEEEcCC-----
Confidence 34678999999998888888899999986433310 11001111111 35688999863 25554432211
Q ss_pred ceEEEEECCCCe---------EEEEeecCCCccCCCCCCceeECCC--CcEEEEeCCCCeEEEEccCCcE-EEEe-----
Q 039428 128 SALAAYDLSTWK---------RLFLTQLSGKSEEKSTADDIAVDAE--GNAYVTDVVSSKIWKVGVEGQL-LSII----- 190 (335)
Q Consensus 128 ~~v~~~d~~~~~---------~~~~~~~~~~~~~~~~p~~~~vd~~--G~lyV~d~~~~~I~~~d~~g~~-~~~~----- 190 (335)
+.|..||.++++ .... +... ......+++.++ ++.+++....+.|..+|..... ...+
T Consensus 81 g~v~vwd~~~~~~~~~~~~~~~~~~--~~~~---~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 155 (351)
T 3f3f_A 81 KTVKLWEEDPDQEECSGRRWNKLCT--LNDS---KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE 155 (351)
T ss_dssp SCEEEEEECTTSCTTSSCSEEEEEE--ECCC---SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE
T ss_pred CeEEEEecCCCcccccccCcceeee--eccc---CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc
Confidence 358999987752 2222 2111 345678999999 9888887888999999965321 1100
Q ss_pred -cCCccccccccccccccCeEEEccC---CeEEEEECCCCEEEEEeCCCCceeEE-EEeccCCcCCCCCCeEEEcCCC--
Q 039428 191 -RSPLFTAKEWYKNVFGLNGIVYHPD---GFLIVIHMCSGNLFKIDIRKEEEEVK-LIELRGGSSLSLGDGLALLSPT-- 263 (335)
Q Consensus 191 -~~~~~~~~~~~~~~~~p~Gia~~~d---g~Lyvad~~~~~v~~~d~~~~~~~~~-~~~~~g~~~~~~pdGia~d~~g-- 263 (335)
....+. ..........++++|+ +.++++-..++.+...+...+ ... .....+ . -.....+++.+++
T Consensus 156 ~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~-h-~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 156 MKVLSIP---PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG--KLHVAAKLPG-H-KSLIRSISWAPSIGR 228 (351)
T ss_dssp EESCSCC---CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS--CEEEEEECCC-C-CSCEEEEEECCCSSC
T ss_pred ccccccc---cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC--ceeeeeecCC-C-CcceeEEEECCCCCC
Confidence 000000 0112345788999997 655555556666655555544 322 222222 2 1335789999997
Q ss_pred --cEEEEecCCCeEEEEEcC
Q 039428 264 --KLVVAGNPYPSARLVESS 281 (335)
Q Consensus 264 --~l~va~~~~~~~~v~~~~ 281 (335)
+++++....+.+++.+..
T Consensus 229 ~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 229 WYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp SSEEEEEEETTSCEEEEEEE
T ss_pred cceEEEEEcCCCeEEEEeCC
Confidence 677775545667777654
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00029 Score=68.29 Aligned_cols=213 Identities=13% Similarity=0.017 Sum_probs=131.0
Q ss_pred EEcCCCcc-eeeeEEcC--CCCEEEEEecCCeEEEEECCCC------CCCcceeeeeEEeecCCcCCCCcceEEEeCCCC
Q 039428 43 QYHSPSFL-CETAKWDD--VGRRFLVSFLDGGVGQVLVPDE------YSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRN 113 (335)
Q Consensus 43 ~~~~~~~~-pegia~d~--~g~~~~~~~~~~~I~~~d~~~g------~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g 113 (335)
.+.+.... ..+++|+| ++++++++..++.|..||..++ .. +... .+... ......+++++ ++
T Consensus 58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~--~~~~---~~~~~---~~~v~~~~~s~-~~ 128 (615)
T 1pgu_A 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV--NVKS---EFQVL---AGPISDISWDF-EG 128 (615)
T ss_dssp EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEE--EEEE---EEECC---SSCEEEEEECT-TS
T ss_pred EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccc--cccc---hhhcc---cccEEEEEEeC-CC
Confidence 34443444 68999999 9998888878899999985333 10 0011 11111 13568999998 45
Q ss_pred eEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcE-EEEec
Q 039428 114 RLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQL-LSIIR 191 (335)
Q Consensus 114 ~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~-~~~~~ 191 (335)
+.+++..+... ....|+.|| .++.... +... ....+.+++.++|. ++++.+..+.|..+|..... ...+.
T Consensus 129 ~~l~~~~~~~~-~~~~v~~~d--~~~~~~~--~~~~---~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~ 200 (615)
T 1pgu_A 129 RRLCVVGEGRD-NFGVFISWD--SGNSLGE--VSGH---SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 200 (615)
T ss_dssp SEEEEEECCSS-CSEEEEETT--TCCEEEE--CCSC---SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC
T ss_pred CEEEEeccCCC-CccEEEEEE--CCCccee--eecC---CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec
Confidence 44443332211 113577777 4444322 2111 34667899999996 78888888999999977543 33221
Q ss_pred CCccccccccccccccCeEEEccC-CeEEEEECCCCEEEEEeCCCCceeEEEEecc--CCcCCCCCCeEEEcCCCcEEEE
Q 039428 192 SPLFTAKEWYKNVFGLNGIVYHPD-GFLIVIHMCSGNLFKIDIRKEEEEVKLIELR--GGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 192 ~~~~~~~~~~~~~~~p~Gia~~~d-g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~--g~~~~~~pdGia~d~~g~l~va 268 (335)
.. .. .......++++|+ +.++++-..++.|..+|+..++ ....+... + . -.....+++. ++.++++
T Consensus 201 ~~--~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~-~-~~~v~~~~~~-~~~~l~~ 269 (615)
T 1pgu_A 201 TH--HK-----QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE-FLKYIEDDQEP-V-QGGIFALSWL-DSQKFAT 269 (615)
T ss_dssp SS--SC-----TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC-EEEECCBTTBC-C-CSCEEEEEES-SSSEEEE
T ss_pred cc--CC-----CCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-EeEEecccccc-c-CCceEEEEEc-CCCEEEE
Confidence 10 00 0013678999999 8776666678899999988764 44444110 1 1 1335788998 8877777
Q ss_pred ecCCCeEEEEEcCCC
Q 039428 269 GNPYPSARLVESSDG 283 (335)
Q Consensus 269 ~~~~~~~~v~~~~~~ 283 (335)
....+.+++.+...+
T Consensus 270 ~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 270 VGADATIRVWDVTTS 284 (615)
T ss_dssp EETTSEEEEEETTTT
T ss_pred EcCCCcEEEEECCCC
Confidence 554477888887654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.42 E-value=6.4e-05 Score=74.41 Aligned_cols=204 Identities=14% Similarity=0.071 Sum_probs=114.8
Q ss_pred eeEEc--CCCCE-EEEE-ecCCeEEEEECC--C-CCCCcceeeeeEEeecCCc-CCCCcceEEEeCCCCeEEEEEecCC-
Q 039428 53 TAKWD--DVGRR-FLVS-FLDGGVGQVLVP--D-EYSPGTVLEEVKLVKEDDV-VGNATMGIAVDRPRNRLLVAFTDVL- 123 (335)
Q Consensus 53 gia~d--~~g~~-~~~~-~~~~~I~~~d~~--~-g~~~~~v~~~~~~~~~~~~-~~~~p~Gi~~d~~~g~l~v~~~D~~- 123 (335)
.++|. |+|+. ++.+ ..+.+|+.++.. + +. .. ++...+.. .......++++|++..|+.+..|..
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-----~~--~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 153 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-----PR--PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTG 153 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-----CE--ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECS
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-----CE--eccCCccCCCCccccCcEECCCCCEEEEEEecccC
Confidence 45565 88887 5555 446789999853 1 33 11 12111100 1124578899986566766544411
Q ss_pred ---CCccceEEEEECCC------CeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCC-------CCeEEEEccCC-c
Q 039428 124 ---GNKYSALAAYDLST------WKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVV-------SSKIWKVGVEG-Q 185 (335)
Q Consensus 124 ---~~~~~~v~~~d~~~------~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~-------~~~I~~~d~~g-~ 185 (335)
......|+++|.++ ++...... . .......++++|||+ |+++... ...|+.+|.++ .
T Consensus 154 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~--~---~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g 228 (662)
T 3azo_A 154 EGPSDVRRFLAAVPLDGSAAADRSAVRELSD--D---AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG 228 (662)
T ss_dssp SSTTCEEEEEEEEETTSTTTTCGGGSEESSC--S---CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred CCCCCceeEEEEEECCCCccccCCceeEEEe--c---CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence 01114699999988 65432110 1 123556789999996 5544322 25899999873 3
Q ss_pred ----EEEEecCCccccccccccccccCeEEEccCCeEEEEECCCC--EEEEEeCCCCceeEEEEeccCCcCCC------C
Q 039428 186 ----LLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSG--NLFKIDIRKEEEEVKLIELRGGSSLS------L 253 (335)
Q Consensus 186 ----~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~--~v~~~d~~~~~~~~~~~~~~g~~~~~------~ 253 (335)
...+... .......++++|||.+|++...++ +|++++++++ ..+.+. .+..... .
T Consensus 229 ~~~~~~~l~~~----------~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~--~~~~l~-~~~~~~~~p~w~~~ 295 (662)
T 3azo_A 229 RFADTRTLLGG----------PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG--AATQLC-RREEEFAGPLWTPG 295 (662)
T ss_dssp CEEEEEEEEEE----------TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC--CEEESS-CCSSBSSCCCCSTT
T ss_pred cccccEEeCCC----------CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC--ceeecc-cccccccCcccccc
Confidence 2222110 012367889999997776665555 8999998765 333321 1111111 1
Q ss_pred CCeEEEcCCCcEEEEecC-CCeEEEEEcC
Q 039428 254 GDGLALLSPTKLVVAGNP-YPSARLVESS 281 (335)
Q Consensus 254 pdGia~d~~g~l~va~~~-~~~~~v~~~~ 281 (335)
...+++.+++.++++... ...+++++..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 324 (662)
T 3azo_A 296 MRWFAPLANGLIAVVHGKGAAVLGILDPE 324 (662)
T ss_dssp CCSEEECTTSCEEEEEBSSSCEEEEEETT
T ss_pred CceEeEeCCCEEEEEEEcCccEEEEEECC
Confidence 346788778887777432 2345555544
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=0.0001 Score=78.29 Aligned_cols=208 Identities=12% Similarity=0.020 Sum_probs=129.1
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
....+++|+++|+.++++..++.|..||..+++ .+. .+.... .....+++.++.+..+++++... +
T Consensus 658 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~----~~~---~~~~~~---~~v~~~~~~~~~~~~~l~sg~~d----~ 723 (1249)
T 3sfz_A 658 DEVLCCAFSSDDSYIATCSADKKVKIWDSATGK----LVH---TYDEHS---EQVNCCHFTNKSNHLLLATGSND----F 723 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----EEE---EEECCS---SCEEEEEECSSSSCCEEEEEETT----S
T ss_pred CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc----eEE---EEcCCC---CcEEEEEEecCCCceEEEEEeCC----C
Confidence 345789999999988888888999999975554 122 222221 35678888864343333323221 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCccc-c---------
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFT-A--------- 197 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~-~--------- 197 (335)
.|..||.++++....... . ....+.+++.|+|+..++.+..+.|..+|.... ....+....+. .
T Consensus 724 ~v~vwd~~~~~~~~~~~~----h-~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1249)
T 3sfz_A 724 FLKLWDLNQKECRNTMFG----H-TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE 798 (1249)
T ss_dssp CEEEEETTSSSEEEEECC----C-SSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCC
T ss_pred eEEEEECCCcchhheecC----C-CCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcccccc
Confidence 599999998876643221 1 345678999999998888888899999987532 22222110000 0
Q ss_pred ---------cc--------------------------ccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEE
Q 039428 198 ---------KE--------------------------WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKL 242 (335)
Q Consensus 198 ---------~~--------------------------~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~ 242 (335)
|. ..........++++|++.++++-..++.|..++...+. ....
T Consensus 799 ~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-~~~~ 877 (1249)
T 3sfz_A 799 VIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-KVAD 877 (1249)
T ss_dssp CCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE-EEEE
T ss_pred ceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-eeee
Confidence 00 00112335677888888666666777788888887763 3333
Q ss_pred EeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 243 IELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 243 ~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
+. + . ......+++.++|..+++....+.+++.+.
T Consensus 878 ~~--~-h-~~~v~~v~~spdg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 878 CR--G-H-LSWVHGVMFSPDGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp EC--C-C-SSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred cC--C-C-ccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 32 2 2 234678999999987777554466777663
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.40 E-value=6.7e-06 Score=75.25 Aligned_cols=204 Identities=9% Similarity=0.045 Sum_probs=117.7
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
...+++|+++++.+++...++.|..||..++.. ... ....... ......++++++...|+++..| ..
T Consensus 57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~----~~~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d------~~ 123 (377)
T 3dwl_C 57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT----WKQ--TLVLLRL-NRAATFVRWSPNEDKFAVGSGA------RV 123 (377)
T ss_dssp CEEEEEECTTTCCEEEEETTSSEEEC------C----CCC--EEECCCC-SSCEEEEECCTTSSCCEEEESS------SC
T ss_pred eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc----eee--eeEeccc-CCceEEEEECCCCCEEEEEecC------Ce
Confidence 457899999999888878889999998643330 000 1111111 1356789999744445543322 35
Q ss_pred EEEEECCCCeEE-EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE----------------EEEecC
Q 039428 130 LAAYDLSTWKRL-FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL----------------LSIIRS 192 (335)
Q Consensus 130 v~~~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~----------------~~~~~~ 192 (335)
|..||.++++.. ....+..+ .....+.+++.|+|+++++.+..+.|..+|..... .....
T Consensus 124 i~iwd~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~- 200 (377)
T 3dwl_C 124 ISVCYFEQENDWWVSKHLKRP--LRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA- 200 (377)
T ss_dssp EEECCC-----CCCCEEECSS--CCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE-
T ss_pred EEEEEECCcccceeeeEeecc--cCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhh-
Confidence 889998876521 00112111 13566789999999988887888889888864211 00000
Q ss_pred CccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCcee---EEEEeccCCcCCCCCCeEEEcCCCcEEEEe
Q 039428 193 PLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEE---VKLIELRGGSSLSLGDGLALLSPTKLVVAG 269 (335)
Q Consensus 193 ~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~---~~~~~~~g~~~~~~pdGia~d~~g~l~va~ 269 (335)
.+ ........++++|+|.++++-..++.|..+|...++.. ...+... ......+++.++|.++++.
T Consensus 201 -~~------~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~ 269 (377)
T 3dwl_C 201 -EY------PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS----QLPLRSLLWANESAIVAAG 269 (377)
T ss_dssp -CC------CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS----SSCEEEEEEEETTEEEEEE
T ss_pred -cc------cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC----CCceEEEEEcCCCCEEEEE
Confidence 11 11233789999999976666678889999998876311 2223221 1235789999999877775
Q ss_pred cCCCeEEEEEcC
Q 039428 270 NPYPSARLVESS 281 (335)
Q Consensus 270 ~~~~~~~v~~~~ 281 (335)
.. +.+.++...
T Consensus 270 ~~-~~~~~~~~~ 280 (377)
T 3dwl_C 270 YN-YSPILLQGN 280 (377)
T ss_dssp SS-SSEEEECCC
T ss_pred cC-CcEEEEEeC
Confidence 52 445555543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=8.5e-05 Score=66.76 Aligned_cols=205 Identities=10% Similarity=0.082 Sum_probs=120.5
Q ss_pred CCCcceeeeEEcCCCCEEEEE-ec---CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCC--CeEEEEE
Q 039428 46 SPSFLCETAKWDDVGRRFLVS-FL---DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPR--NRLLVAF 119 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~-~~---~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~--g~l~v~~ 119 (335)
+......+++|+|++..++++ .. ++.|..||..+++ .......... .....++++++. +.++++.
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~-----~~~~~~~~~~----~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD-----LKLLREIEKA----KPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS-----EEEEEEEEES----SCEEEEECTTCCTTTCCEEEE
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc-----ccceeeeccc----CcEEEEEEcCCCCCCceEEEe
Confidence 334456899999999777666 44 7899999865444 1110111111 256788998742 3444432
Q ss_pred ecCCCCccceEEEEECCCCe-EEEEeecCCCccCCCCCCce------eECCCCcEEEEeCCCCeEEEEccCCc--EEEEe
Q 039428 120 TDVLGNKYSALAAYDLSTWK-RLFLTQLSGKSEEKSTADDI------AVDAEGNAYVTDVVSSKIWKVGVEGQ--LLSII 190 (335)
Q Consensus 120 ~D~~~~~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~p~~~------~vd~~G~lyV~d~~~~~I~~~d~~g~--~~~~~ 190 (335)
. .. +.|..||.++++ ....... . ....+.+ +++++|+.+++.+..+.|..+|.... ....+
T Consensus 87 ~-~d----g~i~iwd~~~~~~~~~~~~~--~---~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 156 (357)
T 3i2n_A 87 D-FG----GNLHIWNLEAPEMPVYSVKG--H---KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM 156 (357)
T ss_dssp E-TT----SCEEEECTTSCSSCSEEECC--C---SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred c-CC----CeEEEEeCCCCCccEEEEEe--c---ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceec
Confidence 2 21 359999998765 3322211 1 1223334 66889988888888899999998643 22222
Q ss_pred cCCccccccccccccccCeEE----EccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC---CC
Q 039428 191 RSPLFTAKEWYKNVFGLNGIV----YHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS---PT 263 (335)
Q Consensus 191 ~~~~~~~~~~~~~~~~p~Gia----~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~---~g 263 (335)
... .. ........++ +++++.++++-..++.|..+|+...+ ....... . .....+++.+ ++
T Consensus 157 ~~~--~~----~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~-~----~~v~~~~~~~~~~~~ 224 (357)
T 3i2n_A 157 EPV--QG----ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-LRWETNI-K----NGVCSLEFDRKDISM 224 (357)
T ss_dssp CCC--TT----SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-EEEEEEC-S----SCEEEEEESCSSSSC
T ss_pred ccc--CC----CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-eeeecCC-C----CceEEEEcCCCCCCC
Confidence 110 00 0011245556 67889777777788999999999873 2222221 1 2367899998 77
Q ss_pred cEEEEecCCCeEEEEEcC
Q 039428 264 KLVVAGNPYPSARLVESS 281 (335)
Q Consensus 264 ~l~va~~~~~~~~v~~~~ 281 (335)
..+++....+.+++.+..
T Consensus 225 ~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 225 NKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp CEEEEEESTTEEEEEEEE
T ss_pred CEEEEECCCCeEEEEeCc
Confidence 766665444677777654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.1e-05 Score=77.60 Aligned_cols=205 Identities=11% Similarity=0.091 Sum_probs=127.9
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCC-CeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPR-NRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~-g~l~v~~~D~~~~~~~ 128 (335)
...+++|+++|+.++++..++.|..||..++.. .. .....+.. .....++++++. ++++++.. .. +
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-----~~--~~~l~~h~-~~V~~l~~s~~~~~~~l~s~s-~D----g 77 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-----KL--IDTLTGHE-GPVWRVDWAHPKFGTILASCS-YD----G 77 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-----EE--EEEECCCS-SCEEEEEECCTTSCSEEEEEE-TT----S
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-----cc--ceeccCCc-CceEEEEecCCCCCCEEEEEe-CC----C
Confidence 357889999999888888899999998532221 11 11112111 356789997641 55554322 21 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC--CcEEEEeCCCCeEEEEccCCcE---EEEecCCcccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE--GNAYVTDVVSSKIWKVGVEGQL---LSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~--G~lyV~d~~~~~I~~~d~~g~~---~~~~~~~~~~~~~~~~~ 203 (335)
.|..||..+++.......... ......+++.|+ |+.+++.+..+.|..+|..... ...+. ..
T Consensus 78 ~I~vwd~~~~~~~~~~~~~~h---~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~----------~~ 144 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVHAVH---SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID----------AH 144 (753)
T ss_dssp CEEEEEEETTEEEEEEEECCC---SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE----------CC
T ss_pred eEEEEECCCCcccccccccCC---CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee----------cC
Confidence 599999988864322222211 345678999999 8888888888999999976441 11110 01
Q ss_pred ccccCeEEEcc-------------CCeEEEEECCCCEEEEEeCCCCceeEEEE-eccCCcCCCCCCeEEEcCC---CcEE
Q 039428 204 VFGLNGIVYHP-------------DGFLIVIHMCSGNLFKIDIRKEEEEVKLI-ELRGGSSLSLGDGLALLSP---TKLV 266 (335)
Q Consensus 204 ~~~p~Gia~~~-------------dg~Lyvad~~~~~v~~~d~~~~~~~~~~~-~~~g~~~~~~pdGia~d~~---g~l~ 266 (335)
......++++| ++.++++...++.|..+|........... ...+ . -.....+++.++ +.++
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~-h-~~~V~~l~~sp~~~~~~~l 222 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-H-SDWVRDVAWSPTVLLRSYL 222 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC-C-SSCEEEEEECCCCSSSEEE
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC-C-CCcEEEEEeccCCCCCCEE
Confidence 22367888888 47666666778888888887652121222 1222 1 133678999999 8877
Q ss_pred EEecCCCeEEEEEcCC
Q 039428 267 VAGNPYPSARLVESSD 282 (335)
Q Consensus 267 va~~~~~~~~v~~~~~ 282 (335)
++....+.+++.+...
T Consensus 223 ~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 223 ASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EEEESSSCEEEEEESS
T ss_pred EEEecCCEEEEecCCC
Confidence 7755456788877654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00032 Score=69.09 Aligned_cols=204 Identities=9% Similarity=-0.006 Sum_probs=127.4
Q ss_pred cceeeeEEcCCCCE-EEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 49 FLCETAKWDDVGRR-FLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 49 ~~pegia~d~~g~~-~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
....+++|+|++.. ++++..++.|..||...++ ... .+ .+.. .....++++| +++++++....
T Consensus 148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~----~~~---~l--~~H~-~~V~~v~fsp-dg~~las~s~D----- 211 (611)
T 1nr0_A 148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK----FKS---TF--GEHT-KFVHSVRYNP-DGSLFASTGGD----- 211 (611)
T ss_dssp SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE----EEE---EE--CCCS-SCEEEEEECT-TSSEEEEEETT-----
T ss_pred CCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe----Eee---ee--cccc-CceEEEEECC-CCCEEEEEECC-----
Confidence 34678999999874 5555889999999854333 111 22 2211 3568999998 67666643221
Q ss_pred ceEEEEECCCCeEEEEeecC---CCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCcccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLS---GKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~---~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~ 203 (335)
..|..||..+++........ ..+. ....+.++++|+|+..++.+..+.|..+|... +....+.... . .
T Consensus 212 ~~i~lwd~~~g~~~~~~~~~~~~~~~h-~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~--~-----~ 283 (611)
T 1nr0_A 212 GTIVLYNGVDGTKTGVFEDDSLKNVAH-SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT--R-----I 283 (611)
T ss_dssp SCEEEEETTTCCEEEECBCTTSSSCSS-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS--S-----G
T ss_pred CcEEEEECCCCcEeeeecccccccccc-CCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCC--C-----c
Confidence 35999999887665332110 0011 34567899999999889888899999999864 4433222110 0 0
Q ss_pred ccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 204 VFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 204 ~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
.....++.+ ++..+++-..++.+..+++..++ ..+.+. + + ......+++.++|+..++....+.+++.+...+
T Consensus 284 ~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~-~~~~~~--g-h-~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 284 EDQQLGIIW--TKQALVSISANGFINFVNPELGS-IDQVRY--G-H-NKAITALSSSADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp GGCEEEEEE--CSSCEEEEETTCCEEEEETTTTE-EEEEEC--C-C-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred cceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCC-cceEEc--C-C-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence 111334454 56556666678888888887762 222222 2 2 234678999999987777554577888887654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00011 Score=68.54 Aligned_cols=218 Identities=12% Similarity=0.126 Sum_probs=129.5
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCC-----cceeeeeEEeecCCcC---------CCCcceEEEeCCC--C
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSP-----GTVLEEVKLVKEDDVV---------GNATMGIAVDRPR--N 113 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~-----~~v~~~~~~~~~~~~~---------~~~p~Gi~~d~~~--g 113 (335)
....++|+++|++++++..++.|..|+..++... .+ ......+...... ......+++.+++ .
T Consensus 30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~ 108 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGE-YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA 108 (447)
T ss_dssp SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCC-EEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccc-eeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence 3568999999999888888999999985433200 00 0000111111100 0246789999743 3
Q ss_pred eEEEEEecCCCCccceEEEEECCCCeEEEE-------------------------------------eecCCCccCCCCC
Q 039428 114 RLLVAFTDVLGNKYSALAAYDLSTWKRLFL-------------------------------------TQLSGKSEEKSTA 156 (335)
Q Consensus 114 ~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~-------------------------------------~~~~~~~~~~~~p 156 (335)
.|..+..| ..|..||..+++.... ..+. .+ .....
T Consensus 109 ~l~s~s~d------~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v 180 (447)
T 3dw8_B 109 QFLLSTND------KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA-NA-HTYHI 180 (447)
T ss_dssp EEEEEECS------SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC-SC-CSSCC
T ss_pred eEEEeCCC------CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec-cC-CCcce
Confidence 44443332 3488888765433100 0000 01 13456
Q ss_pred CceeECCCCcEEEEeCCCCeEEEEccC-Cc-EEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeC
Q 039428 157 DDIAVDAEGNAYVTDVVSSKIWKVGVE-GQ-LLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDI 233 (335)
Q Consensus 157 ~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~-~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~ 233 (335)
+.+++.++|+++++. ..+.|..+|.+ +. ....+...... ........+.++++|++ .++++-..++.|..+|+
T Consensus 181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPAN---MEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSS---GGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccc---ccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 789999999988887 68999999987 32 22222110000 01122347899999998 88888888999999999
Q ss_pred CCCcee----EEEEeccCCc--------CCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 234 RKEEEE----VKLIELRGGS--------SLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 234 ~~~~~~----~~~~~~~g~~--------~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
...+ . ...+...... .......+++.++|+++++... +.+++.+...
T Consensus 257 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 257 RASA-LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp TTCS-SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred cCCc-cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence 8763 2 3444422100 0013578999999988877655 7888888754
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00029 Score=62.51 Aligned_cols=205 Identities=11% Similarity=0.106 Sum_probs=122.4
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCC-CCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRP-RNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~-~g~l~v~~~D~~~~~~~ 128 (335)
.-..++|+++|+.++++..++.|..||..+... +.+. .+.... .....+++.+. .++++++.... .
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~--~~~~---~l~gH~---~~V~~v~~s~~~~g~~l~s~s~D-----~ 77 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH--KLID---TLTGHE---GPVWRVDWAHPKFGTILASCSYD-----G 77 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB--CCCE---EECCCS---SCEEEEEECCGGGCSEEEEEETT-----T
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc--EEEE---EEcccc---CCeEEEEecCCCcCCEEEEEcCC-----C
Confidence 456899999999888888899999998542221 0011 221111 24578888642 35555543221 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC--CcEEEEeCCCCeEEEEccCCcE---EEEecCCcccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE--GNAYVTDVVSSKIWKVGVEGQL---LSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~--G~lyV~d~~~~~I~~~d~~g~~---~~~~~~~~~~~~~~~~~ 203 (335)
.|..||.++++......+.. . ....+.+++.|+ |.++++.+..+.|..+|..... ...+.. .
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~--h-~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~----------h 144 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHAV--H-SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA----------H 144 (297)
T ss_dssp EEEEEEBSSSCBCCCEEECC--C-SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC----------C
T ss_pred EEEEEEcCCCceEEEEEeec--C-CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec----------c
Confidence 69999998764211111111 1 245678999987 7888888888999998875321 111110 1
Q ss_pred ccccCeEEEccC-------------CeEEEEECCCCEEEEEeCCCCceeEEEE-eccCCcCCCCCCeEEEcCCC---cEE
Q 039428 204 VFGLNGIVYHPD-------------GFLIVIHMCSGNLFKIDIRKEEEEVKLI-ELRGGSSLSLGDGLALLSPT---KLV 266 (335)
Q Consensus 204 ~~~p~Gia~~~d-------------g~Lyvad~~~~~v~~~d~~~~~~~~~~~-~~~g~~~~~~pdGia~d~~g---~l~ 266 (335)
....+.++++|+ +.++++-..++.|..+|.+..+...... .+.+ + -.....+++.|++ .++
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~-H-~~~V~~v~~sp~~~~~~~l 222 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-H-SDWVRDVAWSPTVLLRSYM 222 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC-C-SSCEEEEEECCCCSSSEEE
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC-C-CCceEEEEECCCCCCceEE
Confidence 123667888876 4577777778888888876542112111 2223 2 1335789999884 666
Q ss_pred EEecCCCeEEEEEcCC
Q 039428 267 VAGNPYPSARLVESSD 282 (335)
Q Consensus 267 va~~~~~~~~v~~~~~ 282 (335)
++....+.+++.+...
T Consensus 223 as~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 223 ASVSQDRTCIIWTQDN 238 (297)
T ss_dssp EEEETTSCEEEEEESS
T ss_pred EEEECCCcEEEEEeCC
Confidence 6655456788877653
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00075 Score=60.53 Aligned_cols=245 Identities=8% Similarity=0.016 Sum_probs=135.3
Q ss_pred CcceeeeEEcCC---CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCC
Q 039428 48 SFLCETAKWDDV---GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLG 124 (335)
Q Consensus 48 ~~~pegia~d~~---g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~ 124 (335)
.....+++|+++ |+.++++..++.|..||..+... ... ..+.... .....+++++ +++.+++.. ..
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---~~~--~~~~~h~---~~v~~~~~~~-~~~~l~s~~-~d- 107 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIP--KAQQMHT---GPVLDVCWSD-DGSKVFTAS-CD- 107 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---EEE--EEEEECS---SCEEEEEECT-TSSEEEEEE-TT-
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---eeE--EEecccc---CCEEEEEECc-CCCEEEEEc-CC-
Confidence 345689999999 57777778889999998644221 111 1221111 3568999998 554444322 21
Q ss_pred CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeE--CCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCcc------
Q 039428 125 NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAV--DAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLF------ 195 (335)
Q Consensus 125 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~v--d~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~------ 195 (335)
+.|..||.++++....... ....+.+++ +++|+++++.+..+.|..+|... +....+.....
T Consensus 108 ---g~v~iwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 178 (368)
T 3mmy_A 108 ---KTAKMWDLSSNQAIQIAQH------DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADV 178 (368)
T ss_dssp ---SEEEEEETTTTEEEEEEEC------SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEE
T ss_pred ---CcEEEEEcCCCCceeeccc------cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEe
Confidence 3699999998876643221 345677888 88998888878888999998753 22221111000
Q ss_pred -----------------c--c-cc-----ccccccccCeEEEccCC----eEEEEECCCCEEEEEeCCCCc--eeEEEEe
Q 039428 196 -----------------T--A-KE-----WYKNVFGLNGIVYHPDG----FLIVIHMCSGNLFKIDIRKEE--EEVKLIE 244 (335)
Q Consensus 196 -----------------~--~-~~-----~~~~~~~p~Gia~~~dg----~Lyvad~~~~~v~~~d~~~~~--~~~~~~~ 244 (335)
. . +. ..........+++.++. ..+++-..++.|..++.+... .....+.
T Consensus 179 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 179 IYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp ETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred cCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence 0 0 00 00001112333443332 225555677888888887652 0222222
Q ss_pred ccCCc--------CCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe-CCe-EEEE
Q 039428 245 LRGGS--------SLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK-DGR-VYLS 314 (335)
Q Consensus 245 ~~g~~--------~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~-~g~-lyV~ 314 (335)
..... .......+++.++++++++....+.+++.+...+ +....+... ....+++++. +++ |..+
T Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~-~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 259 CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR----TKLKTSEQL-DQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT----EEEEECCCC-SSCEEEEEECTTSSCEEEE
T ss_pred eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC----cEEEEecCC-CCCceEEEECCCCCeEEEE
Confidence 11100 0013568999999976666554577898887654 223333322 2234678885 555 4444
Q ss_pred ecc
Q 039428 315 HLL 317 (335)
Q Consensus 315 ~~~ 317 (335)
...
T Consensus 334 s~d 336 (368)
T 3mmy_A 334 SSY 336 (368)
T ss_dssp ECC
T ss_pred ecc
Confidence 433
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.0003 Score=61.80 Aligned_cols=200 Identities=12% Similarity=0.059 Sum_probs=120.7
Q ss_pred EEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEec
Q 039428 42 YQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD 121 (335)
Q Consensus 42 ~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D 121 (335)
..+.+......++++ ++++.+++...++.|..||..++. ... .+.... .....+++++++..|+++..|
T Consensus 12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~----~~~---~~~~~~---~~v~~~~~~~~~~~l~~~~~d 80 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW----LGT---VVYTGQ---GFLNSVCYDSEKELLLFGGKD 80 (313)
T ss_dssp EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE----EEE---EEEECS---SCEEEEEEETTTTEEEEEETT
T ss_pred HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE----EEE---EeecCC---ccEEEEEECCCCCEEEEecCC
Confidence 344454455678999 888888888889999999864333 111 221221 356899999844444443222
Q ss_pred CCCCccceEEEEECCCC---eEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccc
Q 039428 122 VLGNKYSALAAYDLSTW---KRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAK 198 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~ 198 (335)
+.|..||.... +.... +.. . ......+.+ +++.+++.+..+.|..+| .++....+..
T Consensus 81 ------g~i~~~~~~~~~~~~~~~~--~~~--~-~~~i~~~~~--~~~~l~~~~~d~~i~~~d-~~~~~~~~~~------ 140 (313)
T 3odt_A 81 ------TMINGVPLFATSGEDPLYT--LIG--H-QGNVCSLSF--QDGVVISGSWDKTAKVWK-EGSLVYNLQA------ 140 (313)
T ss_dssp ------SCEEEEETTCCTTSCC-CE--ECC--C-SSCEEEEEE--ETTEEEEEETTSEEEEEE-TTEEEEEEEC------
T ss_pred ------CeEEEEEeeecCCCCcccc--hhh--c-ccCEEEEEe--cCCEEEEEeCCCCEEEEc-CCcEEEeccc------
Confidence 34888887543 22211 111 1 234456777 566777777889999999 4444332221
Q ss_pred cccccccccCeEEEcc-CCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEE
Q 039428 199 EWYKNVFGLNGIVYHP-DGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARL 277 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~-dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v 277 (335)
.......+++.+ ++.++++-..++.|..+|... ....+.... ......+++.+++.++++.. .+.+++
T Consensus 141 ----~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~-dg~i~i 209 (313)
T 3odt_A 141 ----HNASVWDAKVVSFSENKFLTASADKTIKLWQNDK---VIKTFSGIH---NDVVRHLAVVDDGHFISCSN-DGLIKL 209 (313)
T ss_dssp ----CSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE---EEEEECSSC---SSCEEEEEEEETTEEEEEET-TSEEEE
T ss_pred ----CCCceeEEEEccCCCCEEEEEECCCCEEEEecCc---eEEEEeccC---cccEEEEEEcCCCeEEEccC-CCeEEE
Confidence 112366788888 776666667788899998332 334443211 23467899999988444433 467888
Q ss_pred EEcCCC
Q 039428 278 VESSDG 283 (335)
Q Consensus 278 ~~~~~~ 283 (335)
.+...+
T Consensus 210 ~d~~~~ 215 (313)
T 3odt_A 210 VDMHTG 215 (313)
T ss_dssp EETTTC
T ss_pred EECCch
Confidence 887654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=98.35 E-value=2.8e-05 Score=77.70 Aligned_cols=160 Identities=11% Similarity=0.024 Sum_probs=87.8
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC---c
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN---K 126 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~---~ 126 (335)
.+.+++|+|+|++++. ..++.|+.+|..+++. . .++............++++|++..|..+..+.... .
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-----~--~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~ 89 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS-----T--VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSY 89 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-----E--EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCC
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcE-----E--EEeccccccccccceEEECCCCCEEEEEecCccceeecc
Confidence 3678999999996554 4578999998654441 1 23322221101367899998444444432222110 0
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEE-EEecCCc--c--cc-cc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLL-SIIRSPL--F--TA-KE 199 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~-~~~~~~~--~--~~-~~ 199 (335)
...++.+|.++++....... .........++++|||+ +.++.. +.|++++.++... .+..... . .. ++
T Consensus 90 ~~~i~~~d~~~~~~~~l~~~---~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~ 164 (723)
T 1xfd_A 90 TGYYVLSKIPHGDPQSLDPP---EVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSD 164 (723)
T ss_dssp CSEEEEEESSSCCCEECCCT---TCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSSSCCEEEECCCBTTTEEEEECC
T ss_pred eeeEEEEECCCCceEeccCC---ccccccccccEECCCCCEEEEEEC--CeEEEEECCCCceEEEecCCCCCceECcccc
Confidence 14699999998865321111 11123467899999996 333322 6899999875433 2221100 0 00 00
Q ss_pred ---ccccccccCeEEEccCC-eEEEEE
Q 039428 200 ---WYKNVFGLNGIVYHPDG-FLIVIH 222 (335)
Q Consensus 200 ---~~~~~~~p~Gia~~~dg-~Lyvad 222 (335)
.........+++++||| .|+++.
T Consensus 165 ~v~~ee~~~~~~~~~~SpDg~~la~~~ 191 (723)
T 1xfd_A 165 WLYEEEILKTHIAHWWSPDGTRLAYAA 191 (723)
T ss_dssp HHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred eeEEEEeccCcceEEECCCCCEEEEEE
Confidence 00001124689999999 666654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.34 E-value=0.0013 Score=58.42 Aligned_cols=198 Identities=11% Similarity=0.061 Sum_probs=123.4
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
....+++|+++|+.+++...++.|..++..... .. ....... .....+...+.+..|+.+..| .
T Consensus 87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~-----~~--~~~~~~~---~~~~~~~~~~~~~~l~s~s~d------~ 150 (340)
T 4aow_A 87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT-----TT--RRFVGHT---KDVLSVAFSSDNRQIVSGSRD------K 150 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EE--EEEECCS---SCEEEEEECTTSSCEEEEETT------S
T ss_pred CCEEEEEECCCCCEEEEEcccccceEEeecccc-----ee--eeecCCC---CceeEEEEeecCccceeecCC------C
Confidence 345789999999988888889999999854332 11 1111111 234556666634444443222 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC--cEEEEeCCCCeEEEEccCCcEEE-EecCCcccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG--NAYVTDVVSSKIWKVGVEGQLLS-IIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G--~lyV~d~~~~~I~~~d~~g~~~~-~~~~~~~~~~~~~~~~~ 205 (335)
.+..||......... .... . ......+++.+++ .++++....+.|..+|....... .+.. ...
T Consensus 151 ~~~~~d~~~~~~~~~-~~~~--~-~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~----------h~~ 216 (340)
T 4aow_A 151 TIKLWNTLGVCKYTV-QDES--H-SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG----------HTG 216 (340)
T ss_dssp CEEEECTTSCEEEEE-CSSS--C-SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECC----------CSS
T ss_pred eEEEEEeCCCceEEE-Eecc--c-cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecC----------CCC
Confidence 488899876544322 1211 1 2344567776654 57777777889999998754432 2211 112
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
..+.++++|+|.++++-..++.|..+|....+ ....+... .....+++.+++.++++.. .+.+++.+...+
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~~-----~~v~~~~~~~~~~~~~~~~-d~~i~iwd~~~~ 287 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK-HLYTLDGG-----DIINALCFSPNRYWLCAAT-GPSIKIWDLEGK 287 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTE-EEEEEECS-----SCEEEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCc-eeeeecCC-----ceEEeeecCCCCceeeccC-CCEEEEEECCCC
Confidence 36789999999877777788999999998864 44444321 2256788888887766644 367888776544
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.33 E-value=4.1e-05 Score=71.92 Aligned_cols=203 Identities=8% Similarity=0.071 Sum_probs=128.1
Q ss_pred ceeeeEEcCC-CCEEEEEecCCeEEEEECCCC--------CCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEe
Q 039428 50 LCETAKWDDV-GRRFLVSFLDGGVGQVLVPDE--------YSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFT 120 (335)
Q Consensus 50 ~pegia~d~~-g~~~~~~~~~~~I~~~d~~~g--------~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~ 120 (335)
.+..+++.++ ++++++...++.|..|+.... .. +... .+.... ....++++++.+..++++ +
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~--~~~~---~~~~h~---~~v~~l~~~~~~~~~l~s-~ 200 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGEC--QPDL---RLRGHQ---KEGYGLSWNPNLNGYLLS-A 200 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCC--CCSE---EEECCS---SCCCCEEECTTSTTEEEE-E
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccC--CCcE---EecCCC---CCeEEEEeCCCCCCeEEE-E
Confidence 4678999998 455555577899999985421 00 0011 111111 356899999744425453 2
Q ss_pred cCCCCccceEEEEECCCCeE----E-EEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCc----EEEEe
Q 039428 121 DVLGNKYSALAAYDLSTWKR----L-FLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQ----LLSII 190 (335)
Q Consensus 121 D~~~~~~~~v~~~d~~~~~~----~-~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~----~~~~~ 190 (335)
... +.|..||..++.. . ....+.. . ....+++++++ +++++++....+.|..+|.... ....+
T Consensus 201 ~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~--h-~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 201 SDD----HTICLWDINATPKEHRVIDAKNIFTG--H-TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp CTT----SCEEEEETTSCCBGGGEEECSEEECC--C-SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred eCC----CeEEEEeCCCCCCCCceeccceeecC--C-CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 221 3599999876321 1 0011111 1 34578899999 5789999889999999998743 11111
Q ss_pred cCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEE
Q 039428 191 RSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVA 268 (335)
Q Consensus 191 ~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va 268 (335)
. .....++.|+++|++ +++++...++.|..+|+...+.....+.... .....+++.+++ .++++
T Consensus 274 ~----------~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~----~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 274 D----------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK----DEIFQVQWSPHNETILAS 339 (430)
T ss_dssp E----------CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCS----SCEEEEEECSSCTTEEEE
T ss_pred e----------cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCC----CCEEEEEECCCCCCEEEE
Confidence 1 012348899999998 6888888899999999987421344444222 236789999988 56777
Q ss_pred ecCCCeEEEEEcCC
Q 039428 269 GNPYPSARLVESSD 282 (335)
Q Consensus 269 ~~~~~~~~v~~~~~ 282 (335)
+...+.+++.+...
T Consensus 340 ~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 340 SGTDRRLHVWDLSK 353 (430)
T ss_dssp EETTSCCEEEEGGG
T ss_pred EeCCCcEEEEeCCC
Confidence 65557788888654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00033 Score=65.35 Aligned_cols=208 Identities=11% Similarity=0.051 Sum_probs=123.8
Q ss_pred cceeeeEEcC-CCCEEEEEecCCeEEEEECCC---CCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCC
Q 039428 49 FLCETAKWDD-VGRRFLVSFLDGGVGQVLVPD---EYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLG 124 (335)
Q Consensus 49 ~~pegia~d~-~g~~~~~~~~~~~I~~~d~~~---g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~ 124 (335)
....+++|++ ++++++++..++.|..||..+ +.. ......... ......++++++...|+++..|
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~----~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~d--- 132 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV----YSSSLTYDC----SSTVTQITMIPNFDAFAVSSKD--- 132 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC----CSCSEEEEC----SSCEEEEEECTTSSEEEEEETT---
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc----cceeeeccC----CCCEEEEEEeCCCCEEEEEeCC---
Confidence 4568999999 898888778899999998533 210 000001111 1356899999743444443222
Q ss_pred CccceEEEEECC---CCeEEE--------EeecCCCccCCCCCCcee--ECCCCcEEEEeCCCCeEEEEccCC-cEEEEe
Q 039428 125 NKYSALAAYDLS---TWKRLF--------LTQLSGKSEEKSTADDIA--VDAEGNAYVTDVVSSKIWKVGVEG-QLLSII 190 (335)
Q Consensus 125 ~~~~~v~~~d~~---~~~~~~--------~~~~~~~~~~~~~p~~~~--vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~ 190 (335)
..|..||.+ +++... ...+...+ .......+. ..++++++++.+..+.|..+|... +....+
T Consensus 133 ---g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 133 ---GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFG-KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQII 208 (437)
T ss_dssp ---SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGS-SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ---CEEEEEEeccccCCceeeccccceeEEEEccCcc-cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE
Confidence 358888873 332221 11111100 122333444 557888888888889999999864 444333
Q ss_pred cCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc----CCCcEE
Q 039428 191 RSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL----SPTKLV 266 (335)
Q Consensus 191 ~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d----~~g~l~ 266 (335)
.... .......++++|++.++++-..++.|..+|+..++ ....+.... . .....+++. +++.++
T Consensus 209 ~~~~--------h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~-~--~~v~~~~~~~~~s~~~~~l 276 (437)
T 3gre_A 209 ENSP--------RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV-LIRSWSFGD-H--APITHVEVCQFYGKNSVIV 276 (437)
T ss_dssp ECCG--------GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE-EEEEEBCTT-C--EEEEEEEECTTTCTTEEEE
T ss_pred ccCC--------CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc-EEEEEecCC-C--CceEEEEeccccCCCccEE
Confidence 2110 11247899999999777777788999999998763 444444322 1 123456443 456666
Q ss_pred EEecCCCeEEEEEcCCC
Q 039428 267 VAGNPYPSARLVESSDG 283 (335)
Q Consensus 267 va~~~~~~~~v~~~~~~ 283 (335)
++....+.+++.+...+
T Consensus 277 ~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 277 VGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp EEESTTEEEEEEETTTT
T ss_pred EEEcCCCcEEEEEcCCC
Confidence 76554466888887655
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.32 E-value=7.6e-05 Score=67.23 Aligned_cols=211 Identities=8% Similarity=0.032 Sum_probs=126.2
Q ss_pred cCCCcceeeeEEcC-CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeec-CCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 45 HSPSFLCETAKWDD-VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKE-DDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 45 ~~~~~~pegia~d~-~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~-~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
.+......+++|++ +++++++...++.|..||..+++. +. .+.. .. .......+++++ +++.+++....
T Consensus 112 ~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~---~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~d 182 (366)
T 3k26_A 112 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL----VA---IFGGVEG-HRDEVLSADYDL-LGEKIMSCGMD 182 (366)
T ss_dssp ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE----EE---EECSTTS-CSSCEEEEEECT-TSSEEEEEETT
T ss_pred cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE----EE---Eeccccc-ccCceeEEEECC-CCCEEEEecCC
Confidence 33444568999999 888887778899999999654431 11 2110 11 113578999998 45444432221
Q ss_pred CCCccceEEEEECCCCeEEEEee----cCC-------------------CccCCCCCCceeECCCCcEEEEeCCCCeEEE
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQ----LSG-------------------KSEEKSTADDIAVDAEGNAYVTDVVSSKIWK 179 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~----~~~-------------------~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~ 179 (335)
+.|..||.++++...... ... ........+.++++ |+++++.+..+.|..
T Consensus 183 -----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~ 255 (366)
T 3k26_A 183 -----HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVC 255 (366)
T ss_dssp -----SCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEE
T ss_pred -----CCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEE
Confidence 359999998764321000 000 00013445667776 667888888899999
Q ss_pred EccCCcEE------------EEecCCccccccccccccccCeEEEccC--CeEEEEECCCCEEEEEeCCCCce---eEEE
Q 039428 180 VGVEGQLL------------SIIRSPLFTAKEWYKNVFGLNGIVYHPD--GFLIVIHMCSGNLFKIDIRKEEE---EVKL 242 (335)
Q Consensus 180 ~d~~g~~~------------~~~~~~~~~~~~~~~~~~~p~Gia~~~d--g~Lyvad~~~~~v~~~d~~~~~~---~~~~ 242 (335)
+|...... ..+. .+. ........++++|+ |.++++-..++.|..+|...++. ....
T Consensus 256 wd~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 256 WKPGKMEDDIDKIKPSESNVTILG--RFD-----YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp EEESSTTCCGGGCCTTCCCEEEEE--EEE-----CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred EeCCCccccccccccCCcchheec--ccc-----ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 98754211 0000 010 01123778899998 87777778889999999987531 2223
Q ss_pred EeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 243 IELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 243 ~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
+.... . ......+++.++++++++....+.+++.+.
T Consensus 329 ~~~~~-~-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 329 LTHHK-C-GAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp ECCTT-C-CSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred Ecccc-c-CCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 32211 0 134678999999987777554466776653
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.31 E-value=9.7e-05 Score=73.12 Aligned_cols=211 Identities=10% Similarity=0.029 Sum_probs=116.7
Q ss_pred cceeeeEEcCCCCEEEEEecC----------CeEEEEECCC------CCCCcceeeeeEEeecCCcCCCCcceEEEeCCC
Q 039428 49 FLCETAKWDDVGRRFLVSFLD----------GGVGQVLVPD------EYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPR 112 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~----------~~I~~~d~~~------g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~ 112 (335)
....+++|+|+|+.++....+ .+|+++|..+ +. .. .+.... ......++++|++
T Consensus 130 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~---~l~~~~--~~~~~~~~~SpDG 199 (662)
T 3azo_A 130 LRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-----VR---ELSDDA--HRFVTGPRLSPDG 199 (662)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-----SE---ESSCSC--SSEECCCEECTTS
T ss_pred ccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-----ee---EEEecC--CCcccCceECCCC
Confidence 346789999999977666322 4899999644 22 11 222011 1245678899855
Q ss_pred CeEEEEEecCCCC--ccceEEEEECC-CC---eEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCC--eEEEEccCC
Q 039428 113 NRLLVAFTDVLGN--KYSALAAYDLS-TW---KRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSS--KIWKVGVEG 184 (335)
Q Consensus 113 g~l~v~~~D~~~~--~~~~v~~~d~~-~~---~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~--~I~~~d~~g 184 (335)
..|+.+..+.... ....|+.+|.+ ++ +....... . ......+++.|||++|++....+ .|++++.++
T Consensus 200 ~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~----~-~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~ 274 (662)
T 3azo_A 200 RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG----P-EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT 274 (662)
T ss_dssp SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE----T-TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC----C-CceEcceEECCCCeEEEEECCCCCeEEEEEECCC
Confidence 5565544332110 11469999998 56 33322211 0 23456789999999877765555 899999854
Q ss_pred cEEEEecCC--ccccccccccccccCeEEEccCCeEEEEEC-CCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeE-EEc
Q 039428 185 QLLSIIRSP--LFTAKEWYKNVFGLNGIVYHPDGFLIVIHM-CSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGL-ALL 260 (335)
Q Consensus 185 ~~~~~~~~~--~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~-~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGi-a~d 260 (335)
+..+.+-.. ....|.+ ..+...++++++++++++.. ...+|+++|.+++ ..+.+.... .....+ +.+
T Consensus 275 ~~~~~l~~~~~~~~~p~w---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~----~~~~~~~s~~ 345 (662)
T 3azo_A 275 GAATQLCRREEEFAGPLW---TPGMRWFAPLANGLIAVVHGKGAAVLGILDPESG--ELVDAAGPW----TEWAATLTVS 345 (662)
T ss_dssp CCEEESSCCSSBSSCCCC---STTCCSEEECTTSCEEEEEBSSSCEEEEEETTTT--EEEECCSSC----CEEEEEEEEE
T ss_pred CceeecccccccccCccc---cccCceEeEeCCCEEEEEEEcCccEEEEEECCCC--cEEEecCCC----CeEEEEEecC
Confidence 433322110 0111110 11246789998896665544 4558999998876 444443221 113455 555
Q ss_pred CCCcEEEEecCCC--eEEEEEcCCC
Q 039428 261 SPTKLVVAGNPYP--SARLVESSDG 283 (335)
Q Consensus 261 ~~g~l~va~~~~~--~~~v~~~~~~ 283 (335)
.+..+|++..... .+++++...+
T Consensus 346 ~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 346 GTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp TTEEEEEEEETTEEEEEEEEETTTC
T ss_pred CCEEEEEEcCCCCCCEEEEEECCCC
Confidence 5444555543222 4555554443
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.31 E-value=7.5e-05 Score=68.42 Aligned_cols=197 Identities=13% Similarity=0.110 Sum_probs=109.9
Q ss_pred eEEcCCCCEEEEEec-CC--eEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 54 AKWDDVGRRFLVSFL-DG--GVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 54 ia~d~~g~~~~~~~~-~~--~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
++|+|+|+.+++... ++ .|+.+|..+++ .. .+...+. ....+++++|++..|+.+..+ ..|
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-----~~--~lt~~~~---~~~~~~~~spdg~~l~~~~~~------~~l 104 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-----AT--QLTEGRG---DNTFGGFLSPDDDALFYVKDG------RNL 104 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCE-----EE--ECCCSSC---BCSSSCEECTTSSEEEEEETT------TEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-----eE--EeeeCCC---CCccceEEcCCCCEEEEEeCC------CeE
Confidence 889999996666633 44 59999965443 11 1221111 122367899855566664322 359
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEe----------------------CCCCeEEEEccCCcEEE
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTD----------------------VVSSKIWKVGVEGQLLS 188 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d----------------------~~~~~I~~~d~~g~~~~ 188 (335)
+++|+++++......... . ........++++|+.+++- .....|+++|.++...+
T Consensus 105 ~~~d~~~g~~~~~~~~~~--~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 105 MRVDLATLEENVVYQVPA--E-WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp EEEETTTCCEEEEEECCT--T-EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred EEEECCCCcceeeeechh--h-cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 999999987664443311 0 1111123458888766531 23468999998754433
Q ss_pred EecCCccccccccccccccCeEEEcc-CC-eEEEEECC-----CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC
Q 039428 189 IIRSPLFTAKEWYKNVFGLNGIVYHP-DG-FLIVIHMC-----SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS 261 (335)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~p~Gia~~~-dg-~Lyvad~~-----~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~ 261 (335)
.+.. .......++++| || .|+++... ..+|+.++.++. ..+.+.... . ......+++.+
T Consensus 182 ~l~~----------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~-~-~~~~~~~~~sp 247 (388)
T 3pe7_A 182 VILQ----------ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTHA-E-GESCTHEFWVP 247 (388)
T ss_dssp EEEE----------ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCCC-T-TEEEEEEEECT
T ss_pred Eeec----------CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeCC-C-CcccccceECC
Confidence 2211 011256889999 99 56444433 458999998876 333332111 0 00123567888
Q ss_pred CCc-E-EEEec-CCCe--EEEEEcCCC
Q 039428 262 PTK-L-VVAGN-PYPS--ARLVESSDG 283 (335)
Q Consensus 262 ~g~-l-~va~~-~~~~--~~v~~~~~~ 283 (335)
+|+ | |++.. +... +++++...+
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 248 DGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp TSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred CCCEEEEEecCCCCCcceEEEEecCCC
Confidence 885 5 44432 2122 666766544
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00064 Score=61.43 Aligned_cols=160 Identities=6% Similarity=-0.014 Sum_probs=97.1
Q ss_pred CcceEEEeC--CCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEE
Q 039428 102 ATMGIAVDR--PRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWK 179 (335)
Q Consensus 102 ~p~Gi~~d~--~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~ 179 (335)
....+++++ ++..+..+..| +.|..||.++++........ . ....+.++++|+|+++++.+..+.|..
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~---~-~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNR------GTIGFQSYEDDSQYIVHSAK---S-DVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp CEEEEECCC---CCEEEEEETT------CCEEEEESSSSCEEEEECCC---S-SCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred CEEEEEcCCCCCCCEEEEEeCC------CcEEEEECCCCcEEEEEecC---C-CCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 467888886 44444333222 35999999988765332221 1 234778999999999998888999999
Q ss_pred EccCCcE-E-EEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCC-CCe
Q 039428 180 VGVEGQL-L-SIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSL-GDG 256 (335)
Q Consensus 180 ~d~~g~~-~-~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~-pdG 256 (335)
+|..... . ..+.. ......+.++++|+|..+++-.. +.|..+|+...+ ....+.......... ...
T Consensus 197 wd~~~~~~~~~~~~~---------~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 197 YNLSSPDQASSRFPV---------DEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDV-GTLAYPTYTIPEFKTGTVT 265 (343)
T ss_dssp EESSCTTSCCEECCC---------CTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSST-TCBSSCCCBC-----CCEE
T ss_pred EECCCCCCCccEEec---------cCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCC-cceeecccccccccccceE
Confidence 9986432 2 22211 01124789999999954444443 489999998763 222221100000110 024
Q ss_pred EEEcCCCcEEEEecC-CCeEEEEEcCC
Q 039428 257 LALLSPTKLVVAGNP-YPSARLVESSD 282 (335)
Q Consensus 257 ia~d~~g~l~va~~~-~~~~~v~~~~~ 282 (335)
++++++|.++++..+ .+.+++.+...
T Consensus 266 ~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 266 YDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 999999987777433 57788887643
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.30 E-value=7.7e-05 Score=71.27 Aligned_cols=213 Identities=12% Similarity=-0.012 Sum_probs=110.8
Q ss_pred eeeeEEcCC---CCEEEEE-ec-C-----------CeEEEEECCCC--CCCcceeeeeEEeecC-CcCCCCcceEEEeCC
Q 039428 51 CETAKWDDV---GRRFLVS-FL-D-----------GGVGQVLVPDE--YSPGTVLEEVKLVKED-DVVGNATMGIAVDRP 111 (335)
Q Consensus 51 pegia~d~~---g~~~~~~-~~-~-----------~~I~~~d~~~g--~~~~~v~~~~~~~~~~-~~~~~~p~Gi~~d~~ 111 (335)
+-|+|++|+ .+.+|+. .. . .+|.|+...++ .... ..++..++..+ .........|++++
T Consensus 71 llgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d-~~~~~~i~~~~~~~~~H~g~~l~fgp- 148 (463)
T 2wg3_C 71 LLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVD-LRTARVFLEVAELHRKHLGGQLLFGP- 148 (463)
T ss_dssp EEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBC-GGGCEEEEEEEESSSSSCEEEEEECT-
T ss_pred ceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccC-CCCceEEEEcCCCCCcccCCcEeECC-
Confidence 457999996 3345555 32 1 37888874322 1000 00111222222 11124467899998
Q ss_pred CCeEEEEEecCCC------------CccceEEEEECCCCeE--EEEee----cCC--------CccCCCCCCceeECCC-
Q 039428 112 RNRLLVAFTDVLG------------NKYSALAAYDLSTWKR--LFLTQ----LSG--------KSEEKSTADDIAVDAE- 164 (335)
Q Consensus 112 ~g~l~v~~~D~~~------------~~~~~v~~~d~~~~~~--~~~~~----~~~--------~~~~~~~p~~~~vd~~- 164 (335)
+|.|||+..|... .....|+++|+++... ...++ +.. -..++-.|.++++|++
T Consensus 149 DG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~t 228 (463)
T 2wg3_C 149 DGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHP 228 (463)
T ss_dssp TSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSC
T ss_pred CCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCC
Confidence 8999999877542 1136799999987310 00000 000 0113568999999997
Q ss_pred ----C--cEEEEeCC-----CCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccC-------CeEEEEECCCC
Q 039428 165 ----G--NAYVTDVV-----SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD-------GFLIVIHMCSG 226 (335)
Q Consensus 165 ----G--~lyV~d~~-----~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d-------g~Lyvad~~~~ 226 (335)
| .+|++|.. ...|.++.+.+..- +..+.+.-+ ......|.|+++-.. |.+++++.. +
T Consensus 229 g~~~G~l~~~~~D~~G~~~~~~ei~~i~~G~~yG--~~~P~~~~~--~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g 303 (463)
T 2wg3_C 229 TDININLTILCSDSNGKNRSSARILQIIKGKDYE--SEPSLLEFK--PFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-G 303 (463)
T ss_dssp SSTTCSEEEEEECC------CEEEEEEC----CC--SCCCCEECC--C----CEEEEEECCCSSCTTTTTCEEEEETT-S
T ss_pred CCcccceEEEecccCCCCCCCCeEeeeccCCCCC--CCCCeEEee--CCCCccccceEEEeCCCChhhcceEEEecCC-C
Confidence 5 56778852 23455553322110 001111110 001246889988632 458999986 7
Q ss_pred EEEEEeCCCCce--eEEEEecc-----CCcCCCCCCeEEEcCCCcEEEEec
Q 039428 227 NLFKIDIRKEEE--EVKLIELR-----GGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 227 ~v~~~d~~~~~~--~~~~~~~~-----g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
+|+++..+..+. ..+.+... .......|.+++++++|.|||+..
T Consensus 304 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 304 NFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred cEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEec
Confidence 899998865421 22222100 011124589999999999999964
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.002 Score=60.48 Aligned_cols=224 Identities=11% Similarity=0.077 Sum_probs=132.5
Q ss_pred ceeeeEEc--CCCCEEEEEecCCeEEEEECCCCCCCcceeeeeE------------------EeecCCcCCCCcceEEEe
Q 039428 50 LCETAKWD--DVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVK------------------LVKEDDVVGNATMGIAVD 109 (335)
Q Consensus 50 ~pegia~d--~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~------------------~~~~~~~~~~~p~Gi~~d 109 (335)
...++++. ++++.++++..++.|..||...+.. ..... .....+.. .....+ +
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--~ 277 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS----VPDHGEEHDYPLVFHTPEENPYFVGVLRGHM-ASVRTV--S 277 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC----C------CCSSEEESCGGGCTTEEEEECCCS-SCEEEE--E
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc----cccccccCCcceEeeccCCCeEEEEEccCcc-ceEEEE--c
Confidence 44677777 5667777778889999998654431 00000 00000000 122333 4
Q ss_pred CCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEE
Q 039428 110 RPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLS 188 (335)
Q Consensus 110 ~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~ 188 (335)
+.+..++++..| +.|..||..+++....... . ......++++++|+..++.+..+.|..+|.. ++...
T Consensus 278 ~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~----~-~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 346 (464)
T 3v7d_B 278 GHGNIVVSGSYD------NTLIVWDVAQMKCLYILSG----H-TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 346 (464)
T ss_dssp EETTEEEEEETT------SCEEEEETTTTEEEEEECC----C-SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCCCEEEEEeCC------CeEEEEECCCCcEEEEecC----C-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence 323445553322 3599999998877644321 1 3456789999999988888888999999986 44444
Q ss_pred EecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 189 IIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
.+.. .......++++ +..+++-..++.|..+|+...+ ....... . .....+++.+++.++++
T Consensus 347 ~~~~----------h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~-~~~~~~~-~----~~~~~~~~~~~~~~l~~ 408 (464)
T 3v7d_B 347 TLQG----------HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS-RKFSYHH-T----NLSAITTFYVSDNILVS 408 (464)
T ss_dssp EECC----------CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC-EEEEEEC-T----TCCCEEEEEECSSEEEE
T ss_pred EEeC----------CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc-eeeeecC-C----CCccEEEEEeCCCEEEE
Confidence 3321 11225667776 4555666678899999998863 2222321 1 23567888999987777
Q ss_pred ecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEeCCeEEEE
Q 039428 269 GNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVKDGRVYLS 314 (335)
Q Consensus 269 ~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~ 314 (335)
.. .+.+++.+...+ +.+..+..+.....+.+++.++.+.++
T Consensus 409 ~~-dg~i~iwd~~~g----~~~~~~~~~~~~~v~~v~~~~~~l~~~ 449 (464)
T 3v7d_B 409 GS-ENQFNIYNLRSG----KLVHANILKDADQIWSVNFKGKTLVAA 449 (464)
T ss_dssp EE-TTEEEEEETTTC----CEEESCTTTTCSEEEEEEEETTEEEEE
T ss_pred ec-CCeEEEEECCCC----cEEehhhccCCCcEEEEEecCCEEEEE
Confidence 55 478888887654 333322122223345677776666664
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00077 Score=63.30 Aligned_cols=202 Identities=10% Similarity=-0.002 Sum_probs=119.8
Q ss_pred eeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 53 TAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 53 gia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
.+.+ +++.++++..++.|..||..+++ .+. .+ .+.. .....+++.+ ++.+..+..| ..|..
T Consensus 127 ~~~~--~~~~l~sgs~dg~i~vwd~~~~~----~~~---~~--~~h~-~~V~~l~~~~-~~~l~s~s~d------g~i~v 187 (464)
T 3v7d_B 127 CLQF--EDNYVITGADDKMIRVYDSINKK----FLL---QL--SGHD-GGVWALKYAH-GGILVSGSTD------RTVRV 187 (464)
T ss_dssp EEEE--ETTEEEEEETTSCEEEEETTTTE----EEE---EE--CCCS-SCEEEEEECS-TTEEEEEETT------SCEEE
T ss_pred EEEE--CCCEEEEEcCCCcEEEEECCCCc----EEE---EE--eCCC-cCEEEEEEcC-CCEEEEEeCC------CCEEE
Confidence 4555 45677777889999999965444 111 22 2211 3567889986 5655443322 35999
Q ss_pred EECCCCeEEEEeecCCCccCCCCCCceeEC--CCCcEEEEeCCCCeEEEEccCCcEEE-EecCC-c----cccccc----
Q 039428 133 YDLSTWKRLFLTQLSGKSEEKSTADDIAVD--AEGNAYVTDVVSSKIWKVGVEGQLLS-IIRSP-L----FTAKEW---- 200 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd--~~G~lyV~d~~~~~I~~~d~~g~~~~-~~~~~-~----~~~~~~---- 200 (335)
||.++++....... . ......+++. ++++..++.+..+.|..+|....... ..... . +..+..
T Consensus 188 wd~~~~~~~~~~~~--h---~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
T 3v7d_B 188 WDIKKGCCTHVFEG--H---NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262 (464)
T ss_dssp EETTTTEEEEEECC--C---SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred EECCCCcEEEEECC--C---CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence 99998876643321 1 2344566766 57788888888899999987643211 00000 0 000000
Q ss_pred --cccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEE
Q 039428 201 --YKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLV 278 (335)
Q Consensus 201 --~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~ 278 (335)
........-.++++++.++++-..++.|..+|+...+ ....+. + . ......+++++++..+++....+.+++.
T Consensus 263 ~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~--~-~-~~~v~~~~~~~~~~~l~sg~~dg~i~vw 337 (464)
T 3v7d_B 263 VGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-CLYILS--G-H-TDRIYSTIYDHERKRCISASMDTTIRIW 337 (464)
T ss_dssp EEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-EEEEEC--C-C-SSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred EEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEec--C-C-CCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 0001112233557778666666778899999998763 334443 2 1 1336789999999877775555778888
Q ss_pred EcCCC
Q 039428 279 ESSDG 283 (335)
Q Consensus 279 ~~~~~ 283 (335)
+...+
T Consensus 338 d~~~~ 342 (464)
T 3v7d_B 338 DLENG 342 (464)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 87654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=9.1e-05 Score=69.05 Aligned_cols=222 Identities=9% Similarity=0.102 Sum_probs=126.9
Q ss_pred eeeeEEcCCC--CEEEEEecCCeEEEEECCCCCCCcc-----------------------ee---------eeeEEeecC
Q 039428 51 CETAKWDDVG--RRFLVSFLDGGVGQVLVPDEYSPGT-----------------------VL---------EEVKLVKED 96 (335)
Q Consensus 51 pegia~d~~g--~~~~~~~~~~~I~~~d~~~g~~~~~-----------------------v~---------~~~~~~~~~ 96 (335)
..+++|.+++ +.++++..++.|..||..++..... .. ...... ..
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 174 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF-AN 174 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE-CS
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe-cc
Confidence 4679999998 6777777889998888532210000 00 000000 01
Q ss_pred CcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCC-CeEEEEeecCC--CccCCCCCCceeECCCC-cEEEEeC
Q 039428 97 DVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLST-WKRLFLTQLSG--KSEEKSTADDIAVDAEG-NAYVTDV 172 (335)
Q Consensus 97 ~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~-~~~~~~~~~~~--~~~~~~~p~~~~vd~~G-~lyV~d~ 172 (335)
+ .......+++++ +++++++..| ..|..||.+. ++......... ........+.++++|+| +++++.+
T Consensus 175 ~-h~~~v~~~~~~~-~~~~l~s~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 246 (447)
T 3dw8_B 175 A-HTYHINSISINS-DYETYLSADD------LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS 246 (447)
T ss_dssp C-CSSCCCEEEECT-TSSEEEEECS------SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE
T ss_pred C-CCcceEEEEEcC-CCCEEEEeCC------CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe
Confidence 1 113467899997 6776665322 4699999984 33332222211 00113456789999998 8888888
Q ss_pred CCCeEEEEccCCcE-----EEEecCCccc-c-ccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCC-CceeEEEEe
Q 039428 173 VSSKIWKVGVEGQL-----LSIIRSPLFT-A-KEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRK-EEEEVKLIE 244 (335)
Q Consensus 173 ~~~~I~~~d~~g~~-----~~~~~~~~~~-~-~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~-~~~~~~~~~ 244 (335)
..+.|..+|..... ...+....-. . ............++++|+|.++++-.. +.|..+|+.. ++ ....+.
T Consensus 247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~-~~~~~~ 324 (447)
T 3dw8_B 247 SKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR-PVETYQ 324 (447)
T ss_dssp TTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS-CSCCEE
T ss_pred CCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc-ccceee
Confidence 88999999976432 2222211000 0 000000014789999999966555555 9999999986 32 333333
Q ss_pred ccCCc-----------CCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 245 LRGGS-----------SLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 245 ~~g~~-----------~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
..... .......+++.++|.++++....+.+++.+...+
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 21100 0000123899999987777655577888887654
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00066 Score=60.06 Aligned_cols=173 Identities=13% Similarity=0.065 Sum_probs=98.2
Q ss_pred CcceeeeEEcC--CCCEEEEEecCCeEEEEECCCCCCCc--ceeeeeEEeecCCcCCCCcceEEEeCCC-CeEEEEEecC
Q 039428 48 SFLCETAKWDD--VGRRFLVSFLDGGVGQVLVPDEYSPG--TVLEEVKLVKEDDVVGNATMGIAVDRPR-NRLLVAFTDV 122 (335)
Q Consensus 48 ~~~pegia~d~--~g~~~~~~~~~~~I~~~d~~~g~~~~--~v~~~~~~~~~~~~~~~~p~Gi~~d~~~-g~l~v~~~D~ 122 (335)
.....+++|.+ +++++++...++.|..||...+.... .... ........ ......++++++. +.++++....
T Consensus 57 ~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~d 133 (351)
T 3f3f_A 57 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN--KLCTLNDS-KGSLYSVKFAPAHLGLKLACLGND 133 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEE--EEEEECCC-SSCEEEEEECCGGGCSEEEEEETT
T ss_pred CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcc--eeeeeccc-CCceeEEEEcCCCCCcEEEEecCC
Confidence 34467899998 58888877889999999865432100 0001 01111111 1356889999741 5544432221
Q ss_pred CCCccceEEEEECCCCeEE------EEeec-C-CCccCCCCCCceeECCC---CcEEEEeCCCCeEEEEccCCcEEEEec
Q 039428 123 LGNKYSALAAYDLSTWKRL------FLTQL-S-GKSEEKSTADDIAVDAE---GNAYVTDVVSSKIWKVGVEGQLLSIIR 191 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~------~~~~~-~-~~~~~~~~p~~~~vd~~---G~lyV~d~~~~~I~~~d~~g~~~~~~~ 191 (335)
+.|..||..+++.. ..... . .+.........+++.|+ ++.+++....+.+...+........+.
T Consensus 134 -----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (351)
T 3f3f_A 134 -----GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA 208 (351)
T ss_dssp -----CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred -----CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeee
Confidence 36999998766421 00111 0 01111455677888886 776666666666655554433221110
Q ss_pred CCccccccccccccccCeEEEccCC----eEEEEECCCCEEEEEeCCC
Q 039428 192 SPLFTAKEWYKNVFGLNGIVYHPDG----FLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 192 ~~~~~~~~~~~~~~~p~Gia~~~dg----~Lyvad~~~~~v~~~d~~~ 235 (335)
.+.. .....+.++++|++ .++++-..++.|..+|...
T Consensus 209 --~~~~-----h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 209 --KLPG-----HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp --ECCC-----CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred --ecCC-----CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 1111 11237899999998 7888877888888888765
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0022 Score=62.90 Aligned_cols=202 Identities=15% Similarity=0.107 Sum_probs=108.1
Q ss_pred eEEEeCCCCeEEEEEecCC--------CCc--cceEEEEECCCCeEEEEeecCCCcc-CCCCCCc-eeEC--CCC---cE
Q 039428 105 GIAVDRPRNRLLVAFTDVL--------GNK--YSALAAYDLSTWKRLFLTQLSGKSE-EKSTADD-IAVD--AEG---NA 167 (335)
Q Consensus 105 Gi~~d~~~g~l~v~~~D~~--------~~~--~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~p~~-~~vd--~~G---~l 167 (335)
.+++|++.+.+|+.+.+.. ++. .+.|+.+|+++|+.++..+...... ....+.. +.++ .+| ++
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL 318 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence 4788987899999653211 110 1359999999999987776532100 0011111 2233 356 34
Q ss_pred EEEeCCCCeEEEEccC-CcEEEEecCC----ccc-------cc----c------ccccccc--------cCeEEEccCC-
Q 039428 168 YVTDVVSSKIWKVGVE-GQLLSIIRSP----LFT-------AK----E------WYKNVFG--------LNGIVYHPDG- 216 (335)
Q Consensus 168 yV~d~~~~~I~~~d~~-g~~~~~~~~~----~~~-------~~----~------~~~~~~~--------p~Gia~~~dg- 216 (335)
++....++.++.+|++ |+.+....-. +.. .| + ....... =.+++++|+.
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g 398 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR 398 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence 5555667788888865 5544322110 000 00 0 0000001 1568999976
Q ss_pred eEEEEEC------------------------------------CCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeE-EE
Q 039428 217 FLIVIHM------------------------------------CSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGL-AL 259 (335)
Q Consensus 217 ~Lyvad~------------------------------------~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGi-a~ 259 (335)
.+|+... ..+.|+.+|+..++ .+..+.... . +.+. ..
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~-~~W~~~~~~-~----~~~~~~~ 472 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK-AKWTKWEKF-A----AWGGTLY 472 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC-EEEEEEESS-C----CCSBCEE
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCC-EEEEecCCC-C----ccceeEE
Confidence 7887642 34789999998774 333444322 1 2232 23
Q ss_pred cCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCC--CCCcceEEEE-eCCeEEEEeccCC
Q 039428 260 LSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGP--THRVATAATV-KDGRVYLSHLLGL 319 (335)
Q Consensus 260 d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p--~~~~Pt~va~-~~g~lyV~~~~~~ 319 (335)
..++.+|+... .+.+.+++...+ +.+-++..+ ....| +++ .+|++||....+.
T Consensus 473 t~gg~v~~g~~-dg~l~a~D~~tG----~~lw~~~~~~~~~~~p--~~~~~~G~~yv~~~~G~ 528 (571)
T 2ad6_A 473 TKGGLVWYATL-DGYLKALDNKDG----KELWNFKMPSGGIGSP--MTYSFKGKQYIGSMYGV 528 (571)
T ss_dssp ETTTEEEEECT-TSEEEEEETTTC----CEEEEEECSSCCCSCC--EEEEETTEEEEEEEECC
T ss_pred ECCCEEEEEcC-CCeEEEEECCCC----CEEEEEeCCCCcEeee--EEEEECCEEEEEEECCC
Confidence 45678888643 367888887665 222222222 12222 334 5999999555444
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.21 E-value=9.2e-05 Score=66.30 Aligned_cols=202 Identities=9% Similarity=-0.015 Sum_probs=122.8
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCe--EEEEEecCCCCcc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNR--LLVAFTDVLGNKY 127 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~--l~v~~~D~~~~~~ 127 (335)
...+++|+++++.++++..++.|..|+...+... ....... .. ......+++++ ++. |+++..|
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~---~~~~~~~-~~---~~~v~~~~~~~-~~~~~l~~~~~d------ 78 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN---VDLLQSL-RY---KHPLLCCNFID-NTDLQIYVGTVQ------ 78 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE---EEEEEEE-EC---SSCEEEEEEEE-SSSEEEEEEETT------
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc---ccceeee-ec---CCceEEEEECC-CCCcEEEEEcCC------
Confidence 4578999999998888888899988885433310 0100121 11 13568899997 455 5443222
Q ss_pred ceEEEEEC-CCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC---cEEEEecC--Ccccccccc
Q 039428 128 SALAAYDL-STWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG---QLLSIIRS--PLFTAKEWY 201 (335)
Q Consensus 128 ~~v~~~d~-~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g---~~~~~~~~--~~~~~~~~~ 201 (335)
+.|..||. ++++... +..... ......+++.+ ++.+++.+..+.|..+|... ........ ..+.
T Consensus 79 g~i~~wd~~~~~~~~~---~~~~~~-~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----- 148 (342)
T 1yfq_A 79 GEILKVDLIGSPSFQA---LTNNEA-NLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK----- 148 (342)
T ss_dssp SCEEEECSSSSSSEEE---CBSCCC-CSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-----
T ss_pred CeEEEEEeccCCceEe---ccccCC-CCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-----
Confidence 35999999 8876532 211001 34567899999 88888888889999998653 00000000 0111
Q ss_pred ccccccCeEEEccCCeEEEEECCCCEEEEEeCCC-CceeEEEEeccCCcCCCCCCeEEEcC-CCcEEEEecCCCeEEEEE
Q 039428 202 KNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRK-EEEEVKLIELRGGSSLSLGDGLALLS-PTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~-~~~~~~~~~~~g~~~~~~pdGia~d~-~g~l~va~~~~~~~~v~~ 279 (335)
....+..+++++++ +++ -..++.|..+|... ............ -.....+++.+ +++++++....+.+++.+
T Consensus 149 -~~~~v~~~~~~~~~-l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 149 -VKNKIFTMDTNSSR-LIV-GMNNSQVQWFRLPLCEDDNGTIEESGL---KYQIRDVALLPKEQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp -SCCCEEEEEECSSE-EEE-EESTTEEEEEESSCCTTCCCEEEECSC---SSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred -eCCceEEEEecCCc-EEE-EeCCCeEEEEECCccccccceeeecCC---CCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence 12347889999887 444 45778999999987 421222222211 12367899999 888777755456777755
Q ss_pred cC
Q 039428 280 SS 281 (335)
Q Consensus 280 ~~ 281 (335)
..
T Consensus 223 ~~ 224 (342)
T 1yfq_A 223 FD 224 (342)
T ss_dssp CC
T ss_pred Ec
Confidence 54
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00013 Score=65.75 Aligned_cols=180 Identities=12% Similarity=0.119 Sum_probs=106.0
Q ss_pred eeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC--------
Q 039428 53 TAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL-------- 123 (335)
Q Consensus 53 gia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~-------- 123 (335)
|...-.++.+||.. ...++|++++. +|.-+ . .++.. .+.-|.++ ++.||.+.....
T Consensus 19 g~~~~~g~~iy~~n~~d~~~ly~~~~-dg~~~----~---~l~~~-----~~~~i~~~--g~~Iyy~~~~~~~~~~~~~~ 83 (302)
T 3s25_A 19 GLFCESDGEVFFSNTNDNGRLYAMNI-DGSNI----H---KLSND-----TAMYINAD--KNYVYYVRNNNQKITSQTFF 83 (302)
T ss_dssp TCEEEETTEEEEEEGGGTTEEEEEET-TSCSC----E---EEEEE-----EEEEEEEC--SSEEEEEEECC------CCS
T ss_pred eEEEEeCCEEEEEeCCCCceEEEEcC-CCCCC----E---EccCC-----ceeeEEEc--CCEEEEEECCCCccccccee
Confidence 33333334455554 45789999985 56521 1 22221 24456554 688887643210
Q ss_pred -CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEe---CCCCeEEEEccCCcEEEEecCCccccc
Q 039428 124 -GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTD---VVSSKIWKVGVEGQLLSIIRSPLFTAK 198 (335)
Q Consensus 124 -~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d---~~~~~I~~~d~~g~~~~~~~~~~~~~~ 198 (335)
.++ ..|++++.++++.....+. . +.++.++| .+|+++ .....|++++.+|+..+.+-..
T Consensus 84 ~~n~-~~Iy~i~~dg~~~~~l~~~------~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~----- 147 (302)
T 3s25_A 84 SYDR-NSLCRIKRNGHGSTVLDPD------P----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH----- 147 (302)
T ss_dssp SCCS-EEEEEEETTSCCCEEEECS------C----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS-----
T ss_pred ccCC-CeEEEEeCCCCcceEeecC------C----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC-----
Confidence 011 5799999998765433221 1 12444454 699998 6788999999998654433211
Q ss_pred cccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCC-CcEEEEecCC-CeE
Q 039428 199 EWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSP-TKLVVAGNPY-PSA 275 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~-g~l~va~~~~-~~~ 275 (335)
..++++++| +||+++.+..+|+++++++. ..+.+. .+ +....+.|+ +.||.++... ..+
T Consensus 148 ---------~~~~~~~~g~~iy~t~~g~~~Iy~~~l~g~--~~~~l~-~~------~~~~~~~P~g~~iy~t~~~~~~~I 209 (302)
T 3s25_A 148 ---------YLFTCNTSDRYFYYNNPKNGQLYRYDTASQ--SEALFY-DC------NCYKPVVLDDTNVYYMDVNRDNAI 209 (302)
T ss_dssp ---------CCCCSEEETTEEEEECTTTCCEEEEETTTT--EEEEEE-CS------CEEEEEEEETTEEEEEEGGGTTEE
T ss_pred ---------CceEeeEECCEEEEEeCCCceEEEEECCCC--CEEEEe-CC------CccceeeecCCEEEEEEcCCCcEE
Confidence 013457777 99999988899999999987 444442 23 222345555 4677775421 356
Q ss_pred EEEEcC
Q 039428 276 RLVESS 281 (335)
Q Consensus 276 ~v~~~~ 281 (335)
.++..+
T Consensus 210 ~~~~ld 215 (302)
T 3s25_A 210 VHVNIN 215 (302)
T ss_dssp EEECSS
T ss_pred EEEECC
Confidence 555543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00032 Score=63.10 Aligned_cols=189 Identities=8% Similarity=0.078 Sum_probs=109.8
Q ss_pred CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCC
Q 039428 70 GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGK 149 (335)
Q Consensus 70 ~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 149 (335)
..|++++. ++.. .+ .+...+ +..+.+.++.||.+..+..+. ..|++++.++........-
T Consensus 88 ~~Iy~i~~-dg~~----~~--~l~~~~--------~~~~s~~g~~Iy~~~~~~~~~--~~Iy~~~~dGs~~~~lt~~--- 147 (302)
T 3s25_A 88 NSLCRIKR-NGHG----ST--VLDPDP--------CIYASLIGNYIYYLHYDTQTA--TSLYRIRIDGEEKKKIKNH--- 147 (302)
T ss_dssp EEEEEEET-TSCC----CE--EEECSC--------EEEEEEETTEEEEEEESSSSC--EEEEEEETTSCCCEEEESS---
T ss_pred CeEEEEeC-CCCc----ce--EeecCC--------ccEEEEeCCEEEEEeecCCCC--ceEEEEECCCCCeEEEeCC---
Confidence 57999985 4541 11 132111 223444478898853101112 4699999987654433221
Q ss_pred ccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCC-C
Q 039428 150 SEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCS-G 226 (335)
Q Consensus 150 ~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~-~ 226 (335)
.. .+++++| +||+++....+|++.+.+|+..+.+-. . +..++++|++ +||+++... .
T Consensus 148 ---~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~----~---------~~~~~~~P~g~~iy~t~~~~~~ 207 (302)
T 3s25_A 148 ---YL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD----C---------NCYKPVVLDDTNVYYMDVNRDN 207 (302)
T ss_dssp ---CC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC----S---------CEEEEEEEETTEEEEEEGGGTT
T ss_pred ---Cc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC----C---------CccceeeecCCEEEEEEcCCCc
Confidence 11 3456665 699998888999999999876554311 1 1224567766 999999764 5
Q ss_pred EEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEE-ecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEE
Q 039428 227 NLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVA-GNPYPSARLVESSDGWETASVVAKFNGPTHRVATAA 304 (335)
Q Consensus 227 ~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va-~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~v 304 (335)
+|+|.++++. ..+.+. .. . + | .++++| .||.+ +...+.+..+..+ |.....+... . ..++
T Consensus 208 ~I~~~~ldG~--~~~~Lt-~~-~-~--~---~~~~~g~~Iy~~~~~~~~~i~~~~~D-G~~r~~l~~~------~-~~~i 269 (302)
T 3s25_A 208 AIVHVNINNP--NPVVLT-EA-N-I--E---HYNVYGSLIFYQRGGDNPALCVVKND-GTGFKELAKG------E-FCNI 269 (302)
T ss_dssp EEEEECSSSC--CCEECS-CS-C-E--E---EEEEETTEEEEEECSSSCEEEEEETT-SCCCEEEEES------C-EEEE
T ss_pred EEEEEECCCC--CeEEEe-CC-C-c--c---eEEECCCEEEEEECCCCcEEEEEECC-CCccEEeeCC------c-cceE
Confidence 9999999987 344442 22 1 1 2 356655 56665 4434567777664 3222222221 1 1256
Q ss_pred EEeCCeEEEEec
Q 039428 305 TVKDGRVYLSHL 316 (335)
Q Consensus 305 a~~~g~lyV~~~ 316 (335)
++.++.||.+++
T Consensus 270 ~i~~d~Iy~td~ 281 (302)
T 3s25_A 270 NVTSQYVYFTDF 281 (302)
T ss_dssp EECSSEEEEEET
T ss_pred EEeCCEEEEEEC
Confidence 667888888764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00058 Score=61.75 Aligned_cols=195 Identities=12% Similarity=0.048 Sum_probs=119.3
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC--CCCcceEEEeCCCCeEEEEEecCCCCccceEEEEE
Q 039428 57 DDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV--GNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYD 134 (335)
Q Consensus 57 d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~--~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d 134 (335)
..++++++++..++.|..||..+++. +.. + ..+... ...|. +.....++.+.+- +.. ..+..+|
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~----~~~--~-~~~~v~~~~~~~~-~~s~s~D~~i~~w--~~~----~~~~~~~ 110 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKT----ITT--I-TTPNPRTGGEHPA-IISRGPCNRLLLL--YPG----NQITILD 110 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSC----EEE--E-EEECCCTTCCCCS-EEEECSTTEEEEE--ETT----TEEEEEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcE----EEE--E-ecCCceeeeeCCc-eEEecCCCeEEEE--Ecc----CceEEee
Confidence 34566777778899999999755542 221 1 111110 01223 3222235555552 221 2366677
Q ss_pred CCCCeEEEEeecCCCccCCCCCCceeECC--CCcEEEEeCCCCeEEEEccCCcEE-EEecCCccccccccccccccCeEE
Q 039428 135 LSTWKRLFLTQLSGKSEEKSTADDIAVDA--EGNAYVTDVVSSKIWKVGVEGQLL-SIIRSPLFTAKEWYKNVFGLNGIV 211 (335)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~p~~~~vd~--~G~lyV~d~~~~~I~~~d~~g~~~-~~~~~~~~~~~~~~~~~~~p~Gia 211 (335)
..+++......... ......++++| +|+.+++.+..+.|..+|...... ...... .......++
T Consensus 111 ~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---------~~~~i~~~~ 177 (343)
T 3lrv_A 111 SKTNKVLREIEVDS----ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK---------SDVEYSSGV 177 (343)
T ss_dssp TTTCCEEEEEECCC----SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC---------SSCCCCEEE
T ss_pred cCCcceeEEeecCC----CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC---------CCCceEEEE
Confidence 77776543332211 23467899999 999999888899999999874433 222110 112378999
Q ss_pred EccCCeEEEEECCCCEEEEEeCCCCceeE-EEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 212 YHPDGFLIVIHMCSGNLFKIDIRKEEEEV-KLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 212 ~~~dg~Lyvad~~~~~v~~~d~~~~~~~~-~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
++|+|.++++-..++.|..+|+..++ .. ..+.. .+ -.....+++.++|.++++... +.+++.+....
T Consensus 178 ~~pdg~~lasg~~dg~i~iwd~~~~~-~~~~~~~~--~h-~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~ 245 (343)
T 3lrv_A 178 LHKDSLLLALYSPDGILDVYNLSSPD-QASSRFPV--DE-EAKIKEVKFADNGYWMVVECD-QTVVCFDLRKD 245 (343)
T ss_dssp ECTTSCEEEEECTTSCEEEEESSCTT-SCCEECCC--CT-TSCEEEEEECTTSSEEEEEES-SBEEEEETTSS
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCC-CCccEEec--cC-CCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCC
Confidence 99999888888889999999998874 23 34432 11 133678999999987776442 57888876543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00012 Score=73.05 Aligned_cols=152 Identities=8% Similarity=0.017 Sum_probs=83.0
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEE-eCCCC-----
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVT-DVVSS----- 175 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~-d~~~~----- 175 (335)
...++++| +|++++...+.... ...|+.+|.++++..........+.-...+..+++.|||+ ++++ ....+
T Consensus 257 ~~~~~~Sp-Dg~~l~~~~~~~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 334 (723)
T 1xfd_A 257 ITMVKWAT-STKVAVTWLNRAQN-VSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF 334 (723)
T ss_dssp EEEEEESS-SSEEEEEEEETTSC-EEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred eEEEEEeC-CCeEEEEEEcCCCC-eEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcce
Confidence 45688997 67666543332222 1569999999887653322111000001124789999997 5553 43334
Q ss_pred -eEEEEc-cCCcE---EEEecCCccccccccccccccCeEEEccCC-eEEEEECC----CCEEEEEeCCCCceeEEEEec
Q 039428 176 -KIWKVG-VEGQL---LSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMC----SGNLFKIDIRKEEEEVKLIEL 245 (335)
Q Consensus 176 -~I~~~d-~~g~~---~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~----~~~v~~~d~~~~~~~~~~~~~ 245 (335)
.|+.+| .+++. .+. +... .......++++||| .||++... ..+||+++.++.. ....+
T Consensus 335 ~~l~~~d~~~~~~~~~~~~-----l~~~----~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~l-- 402 (723)
T 1xfd_A 335 YHITVSSSQPNSSNDNIQS-----ITSG----DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF-NRQCL-- 402 (723)
T ss_dssp EEEEEECSSCCSSSCCCCB-----SCCS----SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC-CCBCS--
T ss_pred eEEEEEeccCCCCccceeE-----eecC----CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC-Cccee--
Confidence 799998 45433 221 1110 00012236899999 78766554 3578988877641 12222
Q ss_pred cCCc-CCCCCCeEEEcCCCcEEEE
Q 039428 246 RGGS-SLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 246 ~g~~-~~~~pdGia~d~~g~l~va 268 (335)
.+.. .......+++.++|+.++.
T Consensus 403 ~~~~~~~~~~~~~~~spdg~~l~~ 426 (723)
T 1xfd_A 403 SCDLVENCTYFSASFSHSMDFFLL 426 (723)
T ss_dssp STTSSSSCCCCEEEECTTSSEEEE
T ss_pred cccccCCCCeEEEEECCCCCEEEE
Confidence 1100 0123567999999975555
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00041 Score=63.34 Aligned_cols=166 Identities=12% Similarity=0.043 Sum_probs=100.3
Q ss_pred ceeeeEEcC-CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCC--CCeEEEEEecCCCCc
Q 039428 50 LCETAKWDD-VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRP--RNRLLVAFTDVLGNK 126 (335)
Q Consensus 50 ~pegia~d~-~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~--~g~l~v~~~D~~~~~ 126 (335)
...+++|.+ ++++++++..++.|..||..+++ ... ....+ .....+.+.+. ++.++++.. ..
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~--- 165 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ----TAD---VFNFE----ETVYSHHMSPVSTKHCLVAVGT-RG--- 165 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTE----EEE---EEECS----SCEEEEEECSSCSSCCEEEEEE-SS---
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc----cce---eccCC----CceeeeEeecCCCCCcEEEEEc-CC---
Confidence 457889999 66677776789999999965443 111 22222 23456777652 223444322 21
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcE--EEEecCCc--cc-cc--
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQL--LSIIRSPL--FT-AK-- 198 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~--~~~~~~~~--~~-~~-- 198 (335)
+.|..||.++++....... . ......+++.|++. ++++....+.|..+|..... ...+.... .. ..
T Consensus 166 -~~v~~~d~~~~~~~~~~~~----~-~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 239 (408)
T 4a11_B 166 -PKVQLCDLKSGSCSHILQG----H-RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES 239 (408)
T ss_dssp -SSEEEEESSSSCCCEEECC----C-CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTT
T ss_pred -CeEEEEeCCCcceeeeecC----C-CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecc
Confidence 3599999987765433221 1 34567899999987 78787888899999976322 11111000 00 00
Q ss_pred cccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCC
Q 039428 199 EWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
...........++++|++..+++-..++.|..+|+...
T Consensus 240 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp SSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred ccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence 00112234788999999966666667788888888764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00017 Score=75.66 Aligned_cols=208 Identities=13% Similarity=0.027 Sum_probs=115.4
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC--C--C
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV--L--G 124 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~--~--~ 124 (335)
..+..++|+|+|+.+++....+.|+.+|..+++ .. .+..... .....++++|++..|..+..+. . .
T Consensus 379 ~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-----~~--~~~~~~~---~~v~~~~~SpDG~~la~~~~~~~~~~~~ 448 (1045)
T 1k32_A 379 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-----PT--VIERSRE---AMITDFTISDNSRFIAYGFPLKHGETDG 448 (1045)
T ss_dssp CSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----EE--EEEECSS---SCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred cceeeeEECCCCCEEEEECCCCeEEEEECCCCc-----eE--EeccCCC---CCccceEECCCCCeEEEEecCccccccC
Confidence 456899999999988877778899999975554 12 1321111 2347899998434444432221 0 0
Q ss_pred CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCC-CeEEEE------ccCCcEEEE--ecCC-
Q 039428 125 NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVS-SKIWKV------GVEGQLLSI--IRSP- 193 (335)
Q Consensus 125 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~-~~I~~~------d~~g~~~~~--~~~~- 193 (335)
.....|+.||.++++... +... ......+++++||+ +|++.... ..++.. -..+..... +...
T Consensus 449 ~~~~~i~l~d~~~g~~~~---l~~~---~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1045)
T 1k32_A 449 YVMQAIHVYDMEGRKIFA---ATTE---NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS 522 (1045)
T ss_dssp CCEEEEEEEETTTTEEEE---CSCS---SSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTC
T ss_pred CCCCeEEEEECCCCcEEE---eeCC---CcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCC
Confidence 111469999999887432 2111 33456689999996 66554321 111110 000111000 0000
Q ss_pred --c--c------------cccc------c-cccccccCeEEEccCCeEEEE-------------ECCCCEEEEEeCCCCc
Q 039428 194 --L--F------------TAKE------W-YKNVFGLNGIVYHPDGFLIVI-------------HMCSGNLFKIDIRKEE 237 (335)
Q Consensus 194 --~--~------------~~~~------~-~~~~~~p~Gia~~~dg~Lyva-------------d~~~~~v~~~d~~~~~ 237 (335)
. | ...+ . ........++++++||.+|+. .....+|+++|..++
T Consensus 523 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~- 601 (1045)
T 1k32_A 523 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR- 601 (1045)
T ss_dssp CCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC-
T ss_pred CCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCC-
Confidence 0 0 0000 0 001123578999999976653 233568999999887
Q ss_pred eeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcCCC
Q 039428 238 EEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 238 ~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~~~ 283 (335)
....+. . . +..+++.+||+ |++++. +.+++++...+
T Consensus 602 -~~~~l~-~--~----v~~~~~S~DG~~l~~~~~--~~i~~~d~~~~ 638 (1045)
T 1k32_A 602 -KVTEVK-N--N----LTDLRLSADRKTVMVRKD--DGKIYTFPLEK 638 (1045)
T ss_dssp -CEEEEE-E--E----EEEEEECTTSCEEEEEET--TSCEEEEESSC
T ss_pred -cEEEee-c--C----cceEEECCCCCEEEEEcC--CcEEEEeCccC
Confidence 334333 1 1 56789999996 555555 46888876544
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0024 Score=63.87 Aligned_cols=203 Identities=15% Similarity=0.126 Sum_probs=108.2
Q ss_pred ceEEEeCCCCeEEEEEecCC-----------CCc--cceEEEEECCCCeEEEEeecCCCcc----CCCCCCceeECCCC-
Q 039428 104 MGIAVDRPRNRLLVAFTDVL-----------GNK--YSALAAYDLSTWKRLFLTQLSGKSE----EKSTADDIAVDAEG- 165 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~-----------~~~--~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~p~~~~vd~~G- 165 (335)
..+++|++.+.||+.+.+.. ++. ...|+.+|+++|++++......... ....|.=+....+|
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK 325 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence 46889988899999653310 100 1259999999999997766532100 01112111111245
Q ss_pred --cEEEEeCCCCeEEEEccC-CcEEEEecCC---cc-----------------------ccccccccccccCeEEEccCC
Q 039428 166 --NAYVTDVVSSKIWKVGVE-GQLLSIIRSP---LF-----------------------TAKEWYKNVFGLNGIVYHPDG 216 (335)
Q Consensus 166 --~lyV~d~~~~~I~~~d~~-g~~~~~~~~~---~~-----------------------~~~~~~~~~~~p~Gia~~~dg 216 (335)
.+++....++.|+.+|.+ |+.+..+... +. ..|. ......-.+++++|++
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~-~~G~~~w~~~a~dp~~ 404 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG-PYGAHNWHPMSFNPQT 404 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC-TTCSSCSSCCEEETTT
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC-cccccCCCCceEcCCC
Confidence 455555667888888875 5544322110 00 0000 0001112478999976
Q ss_pred -eEEEEEC------------------------------------------CCCEEEEEeCCCCceeEEEEeccCCcCCCC
Q 039428 217 -FLIVIHM------------------------------------------CSGNLFKIDIRKEEEEVKLIELRGGSSLSL 253 (335)
Q Consensus 217 -~Lyvad~------------------------------------------~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~ 253 (335)
.+|+... ..+.|..+|+.+++ .+..+.... .
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~-~~W~~~~~~----~- 478 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK-AAWSVEHVS----P- 478 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE-EEEEEEESS----S-
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc-EEeecCCCC----C-
Confidence 7777532 12789999998874 333344321 1
Q ss_pred CCeEEEc-CCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEE-eCCeEEEEeccC
Q 039428 254 GDGLALL-SPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATV-KDGRVYLSHLLG 318 (335)
Q Consensus 254 pdGia~d-~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~-~~g~lyV~~~~~ 318 (335)
..|..+. .++.+|+. ...+.+++++...+ +.+-.+..+....-+-+++ .+|+.||+...|
T Consensus 479 ~~~g~~~~~g~~v~~g-~~dg~l~a~D~~tG----~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G 540 (677)
T 1kb0_A 479 WNGGTLTTAGNVVFQG-TADGRLVAYHAATG----EKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVG 540 (677)
T ss_dssp CCCCEEEETTTEEEEE-CTTSEEEEEETTTC----CEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CcCcceEeCCCEEEEE-CCCCcEEEEECCCC----ceeeeeeCCCCcccCCEEEEeCCEEEEEEecc
Confidence 2333344 44567776 33477888887765 3333333232222223555 488988855444
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00083 Score=63.42 Aligned_cols=242 Identities=10% Similarity=0.050 Sum_probs=132.5
Q ss_pred ceeeeEEcCCCCEEEE---E-ecCCeEEEEECCCCC----CCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEec
Q 039428 50 LCETAKWDDVGRRFLV---S-FLDGGVGQVLVPDEY----SPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD 121 (335)
Q Consensus 50 ~pegia~d~~g~~~~~---~-~~~~~I~~~d~~~g~----~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D 121 (335)
...+++|+++|+.+++ + ..++.|..||..+.. ...+.+.. +....+. ......++++|.+++++++...
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~h-~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAY--HKLLKDA-GGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEE--EECCCSG-GGSEEEEEECSSCTTEEEEEET
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeee--eeccCCC-CCceEEEEECCCCCCEEEEEEC
Confidence 3689999999998886 4 557889999853220 00000110 1111111 1357899999854666664332
Q ss_pred CCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccc
Q 039428 122 VLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWY 201 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~ 201 (335)
. +.|..||.+++........ . ....+.++++|+|+..++.+..+.|..+|.+++....+..+....+
T Consensus 171 D-----g~v~iwD~~~~~~~~~~~~----~-~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~--- 237 (434)
T 2oit_A 171 D-----GSIAVLQVTETVKVCATLP----S-TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYES--- 237 (434)
T ss_dssp T-----SCEEEEEESSSEEEEEEEC----G-GGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCT---
T ss_pred C-----CeEEEEEcCCCcceeeccC----C-CCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCC---
Confidence 1 3599999988754422211 1 3457789999999877777788999999998665543321110000
Q ss_pred ccccccCeEEEccCCe-EEEEECCCC------EEEEEeCCCCce--eEEEEeccCC-c--CCCCCCeEEEc--CCC-cEE
Q 039428 202 KNVFGLNGIVYHPDGF-LIVIHMCSG------NLFKIDIRKEEE--EVKLIELRGG-S--SLSLGDGLALL--SPT-KLV 266 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg~-Lyvad~~~~------~v~~~d~~~~~~--~~~~~~~~g~-~--~~~~pdGia~d--~~g-~l~ 266 (335)
........+++++++. +.+.....+ .+..+++...+. ........+- . ....+..+.+. ++. .++
T Consensus 238 ~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~ 317 (434)
T 2oit_A 238 DHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVL 317 (434)
T ss_dssp TSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEE
T ss_pred CCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEE
Confidence 0112467889998873 333333332 366666654310 1111111110 0 01122344444 554 567
Q ss_pred EEecCCCeEEEEEcCC---CcEEEEEeee--ecCC-----CCCcceEEEEe
Q 039428 267 VAGNPYPSARLVESSD---GWETASVVAK--FNGP-----THRVATAATVK 307 (335)
Q Consensus 267 va~~~~~~~~v~~~~~---~~~~~~~~~~--~~~p-----~~~~Pt~va~~ 307 (335)
+++..++.+.++...+ .|......+. ...| .-.+|.+++++
T Consensus 318 v~s~~s~dv~vl~~~~~~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d 368 (434)
T 2oit_A 318 AASAASTEVSILARQSDQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVD 368 (434)
T ss_dssp EEETTCSBCEEEEECTTSSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEE
T ss_pred EecCCCCceeEEEecCCCCccEEEeccccccccccCCCCCCCceeeEEEEE
Confidence 7777677777776543 3655443322 1223 25667888885
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00077 Score=60.75 Aligned_cols=206 Identities=10% Similarity=0.030 Sum_probs=113.9
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
...+++|+|+|+.+++...+++|..||....... .+....+.... .....++++| ++.++++.... ..
T Consensus 109 ~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~---~~~~~~~~~h~---~~v~~v~~~p-~~~~l~s~s~D-----~~ 176 (330)
T 2hes_X 109 EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE---YECISVLQEHS---QDVKHVIWHP-SEALLASSSYD-----DT 176 (330)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC---CEEEEEECCCS---SCEEEEEECS-SSSEEEEEETT-----SC
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC---eEEEEEeccCC---CceEEEEECC-CCCEEEEEcCC-----Ce
Confidence 3568999999998877788999999985322110 11101221111 2567899998 55555543221 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCC--CcEEEEeCCCCeEEEEccCCc-----EE-EEecCCcccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE--GNAYVTDVVSSKIWKVGVEGQ-----LL-SIIRSPLFTAKEWY 201 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~--G~lyV~d~~~~~I~~~d~~g~-----~~-~~~~~~~~~~~~~~ 201 (335)
|..||..++.......+.+. ....+.++++++ +...++.+..+.|..++..+. .. ... ..+..
T Consensus 177 i~iW~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~---- 247 (330)
T 2hes_X 177 VRIWKDYDDDWECVAVLNGH---EGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE--AILPD---- 247 (330)
T ss_dssp EEEEEEETTEEEEEEEECCC---SSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE--EECCS----
T ss_pred EEEEECCCCCeeEEEEccCC---CCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe--eeccc----
Confidence 88888766533222223211 345677899998 667777777788888776432 00 000 00100
Q ss_pred ccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEE-ec-cCCcCCCCCCeEEEcC--CCcEEEEecCCCeEEE
Q 039428 202 KNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLI-EL-RGGSSLSLGDGLALLS--PTKLVVAGNPYPSARL 277 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~-~~-~g~~~~~~pdGia~d~--~g~l~va~~~~~~~~v 277 (335)
........+++++++.| ++-..++.|..++...+ ..+.+ .. .+ ........+++.+ +++++++....+.+++
T Consensus 248 ~h~~~v~~v~~s~~~~l-~s~~~dg~v~iw~~~~~--~~~~~~~~~~~-h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~ 323 (330)
T 2hes_X 248 VHKRQVYNVAWGFNGLI-ASVGADGVLAVYEEVDG--EWKVFAKRALC-HGVYEINVVKWLELNGKTILATGGDDGIVNF 323 (330)
T ss_dssp CCSSCEEEEEECTTSCE-EEEETTSCEEEEEEETT--EEEEEEEESCT-TTTSCEEEEEEC-----CCEEEEETTSEEEE
T ss_pred ccccceEEEEEcCCCEE-EEEeCCCEEEEEEcCCC--ceEEEeccccc-cccceEEEEEEecCCCceEEEEecCCCcEEE
Confidence 01123678999976654 45556788888887665 22222 11 12 1111245677877 5676666544466776
Q ss_pred EEc
Q 039428 278 VES 280 (335)
Q Consensus 278 ~~~ 280 (335)
.+.
T Consensus 324 W~~ 326 (330)
T 2hes_X 324 WSL 326 (330)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0026 Score=59.22 Aligned_cols=202 Identities=6% Similarity=-0.032 Sum_probs=119.9
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
...-.+++|+++|+.++++..++.|..||..+++ .+. ...... .....+..+ +.+.++....
T Consensus 147 ~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~----~~~---~~~~h~---~~v~~~s~~---~~~l~sgs~d----- 208 (420)
T 4gga_A 147 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK----RLR---NMTSHS---ARVGSLSWN---SYILSSGSRS----- 208 (420)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----EEE---EECCCS---SCEEEEEEE---TTEEEEEETT-----
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc----EEE---EEeCCC---CceEEEeeC---CCEEEEEeCC-----
Confidence 3346799999999988888889999999965443 111 221111 234455554 3444432211
Q ss_pred ceEEEEECCCCeEE-EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 128 SALAAYDLSTWKRL-FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 128 ~~v~~~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
..+..+|....... ..... . ......+.+.++|+..++....+.|..++........ ..... .......
T Consensus 209 ~~i~~~d~~~~~~~~~~~~~----h-~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~---~~~~~--~~~~~~~ 278 (420)
T 4gga_A 209 GHIHHHDVRVAEHHVATLSG----H-SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW---VPLQT--FTQHQGA 278 (420)
T ss_dssp SEEEEEETTSSSCEEEEEEC----C-SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCS---CCSEE--ECCCSSC
T ss_pred CceeEeeecccceeeEEecc----c-ccceeeeeecCCCCeeeeeeccccceEEeeccccccc---eeeee--ecccCCc
Confidence 35888887754322 21111 1 3456678899999988888888888888865321100 00000 0001123
Q ss_pred cCeEEEccCC-eEEEEE--CCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE-e-cCCCeEEEEEcC
Q 039428 207 LNGIVYHPDG-FLIVIH--MCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA-G-NPYPSARLVESS 281 (335)
Q Consensus 207 p~Gia~~~dg-~Lyvad--~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va-~-~~~~~~~v~~~~ 281 (335)
...++++|++ .++++- +.++.|..+|+..++ ....+... .....+.+.+++..+++ . ...+.+++.+..
T Consensus 279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~-~~~~~~~~-----~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~ 352 (420)
T 4gga_A 279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-CLSAVDAH-----SQVCSILWSPHYKELISGHGFAQNQLVIWKYP 352 (420)
T ss_dssp EEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE-EEEEEECS-----SCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred eeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc-cceeeccc-----cceeeeeecCCCCeEEEEEecCCCEEEEEECC
Confidence 6788999976 665443 356889999998874 44444422 22567788888765554 2 234678888876
Q ss_pred CC
Q 039428 282 DG 283 (335)
Q Consensus 282 ~~ 283 (335)
.+
T Consensus 353 ~~ 354 (420)
T 4gga_A 353 TM 354 (420)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00014 Score=73.58 Aligned_cols=208 Identities=7% Similarity=-0.020 Sum_probs=123.6
Q ss_pred ceeeeEEcCC--CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCC-CeEEEEEecCCCCc
Q 039428 50 LCETAKWDDV--GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPR-NRLLVAFTDVLGNK 126 (335)
Q Consensus 50 ~pegia~d~~--g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~-g~l~v~~~D~~~~~ 126 (335)
...+++|+++ ++.++++..++.|..||..+++ ... ....... ......++++++. +.++++....
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~-----~~~--~~~~~~h-~~~V~~v~~sp~~~~~~l~sgs~d---- 122 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-----WSQ--IAVHAVH-SASVNSVQWAPHEYGPLLLVASSD---- 122 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE-----EEE--EEEECCC-SSCEEEEEECCGGGCSEEEEEETT----
T ss_pred ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc-----ccc--cccccCC-CCCeEEEEECCCCCCCEEEEEeCC----
Confidence 4578999887 8888888889999999864443 111 1111111 1356889999741 5555542221
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-------------CCcEEEEeCCCCeEEEEccCCc--EEEEec
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-------------EGNAYVTDVVSSKIWKVGVEGQ--LLSIIR 191 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-------------~G~lyV~d~~~~~I~~~d~~g~--~~~~~~ 191 (335)
+.|..||..++.......... . ......++++| +|+.+++.+..+.|..+|.... ......
T Consensus 123 -g~I~vwdl~~~~~~~~~~~~~--~-~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 198 (753)
T 3jro_A 123 -GKVSVVEFKENGTTSPIIIDA--H-AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198 (753)
T ss_dssp -SEEEEEECCSSSCCCCEEEEC--C-SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred -CcEEEEEeecCCCcceeEeec--C-CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeee
Confidence 369999987763211011111 1 24456788887 5777777788888988886532 111110
Q ss_pred CCccccccccccccccCeEEEccC---CeEEEEECCCCEEEEEeCCCCcee-EEEEeccCCcCCCCCCeEEEcCCCcEEE
Q 039428 192 SPLFTAKEWYKNVFGLNGIVYHPD---GFLIVIHMCSGNLFKIDIRKEEEE-VKLIELRGGSSLSLGDGLALLSPTKLVV 267 (335)
Q Consensus 192 ~~~~~~~~~~~~~~~p~Gia~~~d---g~Lyvad~~~~~v~~~d~~~~~~~-~~~~~~~g~~~~~~pdGia~d~~g~l~v 267 (335)
.+.. .......++++|+ +.++++-..++.|..+|...++.. ...+...... -.....+++.++|.+++
T Consensus 199 --~~~~-----h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~ 270 (753)
T 3jro_A 199 --TLEG-----HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLA 270 (753)
T ss_dssp --EECC-----CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCC-SSCCCCEEECTTTCCEE
T ss_pred --eecC-----CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCC-CCceEEEEEcCCCCEEE
Confidence 1111 1223789999999 877777778888988888775211 1111111101 23467899999998776
Q ss_pred EecCCCeEEEEEcC
Q 039428 268 AGNPYPSARLVESS 281 (335)
Q Consensus 268 a~~~~~~~~v~~~~ 281 (335)
+....+.+++.+..
T Consensus 271 s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 271 LSGGDNKVTLWKEN 284 (753)
T ss_dssp EECSSSCEECCBCC
T ss_pred EEcCCCEEEEEecC
Confidence 65444667776654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0012 Score=58.33 Aligned_cols=205 Identities=6% Similarity=-0.009 Sum_probs=117.3
Q ss_pred ceeeeEEcCC--CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCC-CeEEEEEecCCCCc
Q 039428 50 LCETAKWDDV--GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPR-NRLLVAFTDVLGNK 126 (335)
Q Consensus 50 ~pegia~d~~--g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~-g~l~v~~~D~~~~~ 126 (335)
.-.+++|.++ |++++.+..+++|..||..+++. .....+.... .....++++|+. +.++++....
T Consensus 55 ~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~-----~~~~~~~~h~---~~v~~v~~~p~~~g~~l~s~s~d---- 122 (297)
T 2pm7_B 55 PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW-----SQIAVHAVHS---ASVNSVQWAPHEYGPMLLVASSD---- 122 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB-----CCCEEECCCS---SCEEEEEECCGGGCSEEEEEETT----
T ss_pred CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce-----EEEEEeecCC---CceeEEEeCcCCCCcEEEEEECC----
Confidence 3468899753 77777778899999999654431 1001111111 246788998731 5554432221
Q ss_pred cceEEEEECCCCe-E-EEEeecCCCccCCCCCCceeECCC-------------CcEEEEeCCCCeEEEEccCC-c-EEEE
Q 039428 127 YSALAAYDLSTWK-R-LFLTQLSGKSEEKSTADDIAVDAE-------------GNAYVTDVVSSKIWKVGVEG-Q-LLSI 189 (335)
Q Consensus 127 ~~~v~~~d~~~~~-~-~~~~~~~~~~~~~~~p~~~~vd~~-------------G~lyV~d~~~~~I~~~d~~g-~-~~~~ 189 (335)
+.|..||.+++. . ...... . ....+.+++.|+ ++.+++.+..+.|..+|.+. + ....
T Consensus 123 -~~v~~wd~~~~~~~~~~~~~~----h-~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~ 196 (297)
T 2pm7_B 123 -GKVSVVEFKENGTTSPIIIDA----H-AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196 (297)
T ss_dssp -SEEEEEEBCSSSCBCCEEEEC----C-SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred -CcEEEEEecCCCceeeeeeec----c-cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE
Confidence 358899987542 1 111111 1 233455667665 56788878888888887643 2 1110
Q ss_pred ecCCccccccccccccccCeEEEccCC---eEEEEECCCCEEEEEeCCCCcee--EEEEeccCCcCCCCCCeEEEcCCCc
Q 039428 190 IRSPLFTAKEWYKNVFGLNGIVYHPDG---FLIVIHMCSGNLFKIDIRKEEEE--VKLIELRGGSSLSLGDGLALLSPTK 264 (335)
Q Consensus 190 ~~~~~~~~~~~~~~~~~p~Gia~~~dg---~Lyvad~~~~~v~~~d~~~~~~~--~~~~~~~g~~~~~~pdGia~d~~g~ 264 (335)
. ..+.. .....+.++++|++ .++++-+.++.|...|.+..... ...+...+ . ......+++.++|+
T Consensus 197 ~--~~l~~-----H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~-~-~~~v~~~~~s~~g~ 267 (297)
T 2pm7_B 197 E--STLEG-----HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEK-F-PDVLWRASWSLSGN 267 (297)
T ss_dssp E--EEECC-----CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSC-C-SSCEEEEEECSSSC
T ss_pred E--EEecC-----CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeeccc-C-CCcEEEEEECCCCC
Confidence 0 01110 11236899999984 77777778888888887664211 12221111 1 12346789999998
Q ss_pred EEEEecCCCeEEEEEcC
Q 039428 265 LVVAGNPYPSARLVESS 281 (335)
Q Consensus 265 l~va~~~~~~~~v~~~~ 281 (335)
++++....+.+++.+..
T Consensus 268 ~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 268 VLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEEETTSCEEEEEEC
T ss_pred EEEEEcCCCcEEEEEEC
Confidence 77775544667777654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00041 Score=62.17 Aligned_cols=206 Identities=12% Similarity=0.093 Sum_probs=120.1
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCC-CCeEEEE-EecCCCCcc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRP-RNRLLVA-FTDVLGNKY 127 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~-~g~l~v~-~~D~~~~~~ 127 (335)
.-..++|+++|++++++..++.|..||..++.. .....+.... .....+++.+. +++++++ ..|
T Consensus 15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-----~~~~~l~gH~---~~V~~v~~~~~~~~~~l~s~s~D------ 80 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-----ILIADLRGHE---GPVWQVAWAHPMYGNILASCSYD------ 80 (316)
T ss_dssp CEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-----EEEEEEECCS---SCEEEEEECCGGGSSCEEEEETT------
T ss_pred eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-----EEEEEEcCCC---ccEEEEEeCCCCCCCEEEEEECC------
Confidence 356899999999888888899999998543320 0001111111 24678888642 3444443 223
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC--CcEEEEeCCCCeEEEEccCCc-EEEEecCCccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE--GNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~--G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~~ 204 (335)
..|..||.++++......+.. . ....+.+++.|+ |.++++.+..+.|..++..+. ..... ..+.. ..
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~--h-~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~--~~~~~-----h~ 150 (316)
T 3bg1_A 81 RKVIIWREENGTWEKSHEHAG--H-DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK--KINNA-----HT 150 (316)
T ss_dssp SCEEEECCSSSCCCEEEEECC--C-SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC--CBTTS-----SS
T ss_pred CEEEEEECCCCcceEEEEccC--C-CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee--eeecc-----cc
Confidence 359999998764221112211 1 345788999987 778888888888888887643 11110 01110 11
Q ss_pred cccCeEEEccC-----------------CeEEEEECCCCEEEEEeCCCCceeEEEE-eccCCcCCCCCCeEEEcCCC---
Q 039428 205 FGLNGIVYHPD-----------------GFLIVIHMCSGNLFKIDIRKEEEEVKLI-ELRGGSSLSLGDGLALLSPT--- 263 (335)
Q Consensus 205 ~~p~Gia~~~d-----------------g~Lyvad~~~~~v~~~d~~~~~~~~~~~-~~~g~~~~~~pdGia~d~~g--- 263 (335)
...+.++++|+ +.++++-..++.|...|....+ ....+ .+.+ + -.....+++.+++
T Consensus 151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~-h-~~~V~~v~~sp~~~~~ 227 (316)
T 3bg1_A 151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEA-H-SDWVRDVAWAPSIGLP 227 (316)
T ss_dssp SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBC-C-SSCEEEEECCCCSSCS
T ss_pred CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeeccc-C-CCceEEEEecCCCCCC
Confidence 23566777776 3466666677777777775431 22222 2222 2 1235678888875
Q ss_pred -cEEEEecCCCeEEEEEcCC
Q 039428 264 -KLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 264 -~l~va~~~~~~~~v~~~~~ 282 (335)
.++++....+.+++.+..+
T Consensus 228 ~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 228 TSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp CCEEEEEETTCEEEEEECSS
T ss_pred CceEEEEcCCCeEEEEEccC
Confidence 5666655457788877643
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00094 Score=60.91 Aligned_cols=74 Identities=5% Similarity=-0.063 Sum_probs=54.3
Q ss_pred ccCeEEEccCCeEEEEECCCCE-EEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGN-LFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~-v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
..+.++++|+|.++++-..++. |..+|...++ ....+.. +.. -.....+++.++|+++++....+.+++.+...
T Consensus 197 ~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~-~~~~~~~-g~h-~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 197 PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV-LVREFRR-GLD-RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp CEEEEEECTTSSEEEEEETTCSEEEEEETTTCC-EEEEEEC-TTC-CSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEEc-CCC-CCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 3689999999988888888887 9999998764 5555542 101 13367899999998887765557788888654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00028 Score=65.78 Aligned_cols=210 Identities=15% Similarity=0.112 Sum_probs=125.0
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECC---CCCCCcceeeee-----EEeecCCc-CCCCcceEE--EeCCCCeEEEE
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVP---DEYSPGTVLEEV-----KLVKEDDV-VGNATMGIA--VDRPRNRLLVA 118 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~---~g~~~~~v~~~~-----~~~~~~~~-~~~~p~Gi~--~d~~~g~l~v~ 118 (335)
...+++|+++++.+++...++.|..||.. .++. .... .-+..... .......+. ..+ ++.++++
T Consensus 113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 187 (437)
T 3gre_A 113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESE----VKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVA 187 (437)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTE----EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEE
T ss_pred CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCce----eeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEE
Confidence 35789999999988888889999988752 2221 1100 00011100 111233343 334 4555554
Q ss_pred EecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCcccc
Q 039428 119 FTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTA 197 (335)
Q Consensus 119 ~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~ 197 (335)
.... +.|..||.++++......... . ....+.++++++|+..++.+..+.|..+|.... ....+.. .
T Consensus 188 ~~~d-----~~i~iwd~~~~~~~~~~~~~~--h-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~- 255 (437)
T 3gre_A 188 LTNL-----SRVIIFDIRTLERLQIIENSP--R-HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF---G- 255 (437)
T ss_dssp EETT-----SEEEEEETTTCCEEEEEECCG--G-GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC---T-
T ss_pred EeCC-----CeEEEEeCCCCeeeEEEccCC--C-CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec---C-
Confidence 2221 469999999887764433210 1 346788999999998888888899999998643 3332210 0
Q ss_pred ccccccccccCeEEEc----cCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCc----------------------CC
Q 039428 198 KEWYKNVFGLNGIVYH----PDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGS----------------------SL 251 (335)
Q Consensus 198 ~~~~~~~~~p~Gia~~----~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~----------------------~~ 251 (335)
.......++++ +++.++++-..++.|..+|...++ ....+...... ..
T Consensus 256 -----~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 329 (437)
T 3gre_A 256 -----DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH-CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSL 329 (437)
T ss_dssp -----TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE-EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSG
T ss_pred -----CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc-EEEEEEcCCCCCccceecccccccccceecccccC
Confidence 11235677555 457788888889999999998763 34444311100 00
Q ss_pred CCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 252 SLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 252 ~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
.....++++ ++.++++....+.+++.+...+
T Consensus 330 ~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 330 NALSTISVS-NDKILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp GGGCCEEEE-TTEEEEEEGGGTEEEEEETTCG
T ss_pred CceEEEEEC-CceEEEecCCCCeEEEEECCCc
Confidence 113457888 6676677554577888886544
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0053 Score=55.11 Aligned_cols=204 Identities=12% Similarity=0.106 Sum_probs=116.9
Q ss_pred CCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 46 SPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
+....-.+++++++ ++++...++.|..||...+.. .....+.... .......++++| ++.++++....
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-----~~~~~~~~~~-h~~~v~~v~~sp-~~~~las~s~D--- 79 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-----TLIDVLDETA-HKKAIRSVAWRP-HTSLLAAGSFD--- 79 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-----EEEEEECTTC-CCSCEEEEEECT-TSSEEEEEETT---
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-----EEEEEEecCC-ccCCEEEEEECC-CCCEEEEEeCC---
Confidence 33334567888876 555557889999998643321 1101221111 113567899998 56555542211
Q ss_pred ccceEEEEECCCCe-----EEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-C-c---EEEEecCCcc
Q 039428 126 KYSALAAYDLSTWK-----RLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-G-Q---LLSIIRSPLF 195 (335)
Q Consensus 126 ~~~~v~~~d~~~~~-----~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g-~---~~~~~~~~~~ 195 (335)
..|..||.+... ......+.+ . ....+.++++|+|+.+++.+..+.|..+|.+ + . ....+..
T Consensus 80 --~~v~iw~~~~~~~~~~~~~~~~~~~~--h-~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~--- 151 (330)
T 2hes_X 80 --STVSIWAKEESADRTFEMDLLAIIEG--H-ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE--- 151 (330)
T ss_dssp --SCEEEEEC-------CCCEEEEEEC-------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC---
T ss_pred --CcEEEEEcccCcCccccceeEEEEcC--C-CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc---
Confidence 358889875321 011111211 1 3456789999999988888888999999873 2 1 1221211
Q ss_pred ccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCc-eeEEEEeccCCcCCCCCCeEEEcCC--CcEEEEecCC
Q 039428 196 TAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEE-EEVKLIELRGGSSLSLGDGLALLSP--TKLVVAGNPY 272 (335)
Q Consensus 196 ~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~-~~~~~~~~~g~~~~~~pdGia~d~~--g~l~va~~~~ 272 (335)
.....+.++++|++.++++-..++.|...+...+. .....+. + . -.....+++.++ +..+++....
T Consensus 152 -------h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~--~-h-~~~v~~~~~~~~~~~~~l~s~s~D 220 (330)
T 2hes_X 152 -------HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN--G-H-EGTVWSSDFDKTEGVFRLCSGSDD 220 (330)
T ss_dssp -------CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC--C-C-SSCEEEEEECCSSSSCEEEEEETT
T ss_pred -------CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc--C-C-CCcEEEEEecCCCCeeEEEEEeCC
Confidence 11237889999999877777788888877776541 0222232 2 2 123567888887 5555554434
Q ss_pred CeEEEEEc
Q 039428 273 PSARLVES 280 (335)
Q Consensus 273 ~~~~v~~~ 280 (335)
+.+++.+.
T Consensus 221 ~~v~iw~~ 228 (330)
T 2hes_X 221 STVRVWKY 228 (330)
T ss_dssp SCEEEEEE
T ss_pred CeEEEEEe
Confidence 66777654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0018 Score=63.13 Aligned_cols=191 Identities=13% Similarity=0.123 Sum_probs=121.5
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCc--CCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDV--VGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~--~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
..+..+++|+|+|..+.+...++.|..||. ++. +. .+. +.. .....+.++++|++..|++++.|
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~-~~~-----l~---~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D---- 150 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKD-NKM-----LT---NLD-SKGNLSSRTYHCFEWNPIESSIVVGNED---- 150 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEET-TEE-----EE---ECC-CSSCSTTTCEEEEEECSSSSCEEEEETT----
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeC-Cce-----ee---ecc-CCCccccccEEEEEEcCCCCEEEEEcCC----
Confidence 345789999999999888888999999983 332 22 222 211 11246899999855556554332
Q ss_pred ccceEEEEECCCCeE-------EEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEE----EEecCCc
Q 039428 126 KYSALAAYDLSTWKR-------LFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLL----SIIRSPL 194 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~-------~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~----~~~~~~~ 194 (335)
+.|..||.+++.+ .........+. ......+++.|+| +++.+..+.|+.++.+++.. ..+..
T Consensus 151 --GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh-~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~-- 223 (588)
T 2j04_A 151 --GELQFFSIRKNSENTPEFYFESSIRLSDAGS-KDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN-- 223 (588)
T ss_dssp --SEEEEEECCCCTTTCCCCEEEEEEECSCTTC-CCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC--
T ss_pred --CEEEEEECCCCccccccceeeeeeecccccc-cccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc--
Confidence 4699999988742 22222111111 3567789999999 56667788999999886542 11210
Q ss_pred cccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEE--cCCCcEEEEecCC
Q 039428 195 FTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLAL--LSPTKLVVAGNPY 272 (335)
Q Consensus 195 ~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~--d~~g~l~va~~~~ 272 (335)
. .......++|+ ++.|..+ . .++|..+|..++ ....+.. | . .....+|++ .+++..+++...+
T Consensus 224 ~-------h~~~V~svaFs-g~~LASa-~-~~tIkLWd~~~~--~~~~~~~-g-h-~~~V~~va~~~s~d~~~La~a~ed 288 (588)
T 2j04_A 224 A-------SRRKITDLKIV-DYKVVLT-C-PGYVHKIDLKNY--SISSLKT-G-S-LENFHIIPLNHEKESTILLMSNKT 288 (588)
T ss_dssp C-------CSSCCCCEEEE-TTEEEEE-C-SSEEEEEETTTT--EEEEEEC-S-C-CSCCCEEEETTCSSCEEEEECSSC
T ss_pred c-------ccCcEEEEEEE-CCEEEEE-e-CCeEEEEECCCC--eEEEEEc-C-C-CceEEEEEeeeCCCCCEEEEEcCC
Confidence 0 11347899999 4455544 3 589999999987 4434443 3 2 244678999 8888665554433
Q ss_pred Ce
Q 039428 273 PS 274 (335)
Q Consensus 273 ~~ 274 (335)
+.
T Consensus 289 G~ 290 (588)
T 2j04_A 289 SY 290 (588)
T ss_dssp EE
T ss_pred CC
Confidence 44
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00014 Score=68.24 Aligned_cols=159 Identities=8% Similarity=0.068 Sum_probs=104.3
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEE
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKV 180 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~ 180 (335)
....|+++|.++++.++.. .. +.|..||.++++......+.+. ....+.+++.| +++++++.+..+.|..+
T Consensus 121 ~V~~l~~~P~~~~~lasGs-~d----g~i~lWd~~~~~~~~~~~~~gH---~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGS-KG----GDIMLWNFGIKDKPTFIKGIGA---GGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEEEECSSCTTCEEEEE-TT----SCEEEECSSCCSCCEEECCCSS---SCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred CEEEEEEeCCCCCEEEEEe-CC----CEEEEEECCCCCceeEEEccCC---CCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 4678999986666665422 21 3599999987654333333221 34578899997 68888888889999999
Q ss_pred ccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc
Q 039428 181 GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL 260 (335)
Q Consensus 181 d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d 260 (335)
|.+++....+..... .......+++++++.++++-..++.|..+|+++. ....+. + . -.....+++.
T Consensus 193 d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~--~-h-~~~v~~v~~~ 259 (435)
T 4e54_B 193 DFKGNILRVFASSDT-------INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLR--M-H-KKKVTHVALN 259 (435)
T ss_dssp ETTSCEEEEEECCSS-------CSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSB--C-C-SSCEEEEEEC
T ss_pred eccCCceeEEeccCC-------CCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEe--c-c-cceEEeeeec
Confidence 998776554322110 1123568999999988888888999999999875 332222 2 1 1235678888
Q ss_pred CCCc-EEEEecCCCeEEEEEcC
Q 039428 261 SPTK-LVVAGNPYPSARLVESS 281 (335)
Q Consensus 261 ~~g~-l~va~~~~~~~~v~~~~ 281 (335)
+++. ++++....+.+++.+..
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~ 281 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLR 281 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETT
T ss_pred CCCceEEEEecCcceeeEEecc
Confidence 8874 55554434667776654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0021 Score=64.33 Aligned_cols=204 Identities=13% Similarity=0.115 Sum_probs=113.0
Q ss_pred eeeeEEcCCCCEEEEE-ecCC----eEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCC-
Q 039428 51 CETAKWDDVGRRFLVS-FLDG----GVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLG- 124 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~~~----~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~- 124 (335)
-.+++|+|+|+.+... ...| .|+++|..+++ .... .+ .. ....++++++++..|+.+..+...
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~----~~~~--~~--~~---~~~~~~~wspDg~~l~~~~~~~~~~ 195 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK----ELPD--VL--ER---VKFSCMAWTHDGKGMFYNAYPQQDG 195 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE----EEEE--EE--EE---ECSCCEEECTTSSEEEEEECCCCSS
T ss_pred EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC----CCcc--cc--cC---cccceEEEEeCCCEEEEEEECCccc
Confidence 3578999999977666 3333 89999975554 1110 11 11 123578999866667776444320
Q ss_pred ---------CccceEEEEECCCCeE--EEEeecCCCccCCCCCCceeECCCCc-EEEEeC-C---CCeEEEEccCC----
Q 039428 125 ---------NKYSALAAYDLSTWKR--LFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV-V---SSKIWKVGVEG---- 184 (335)
Q Consensus 125 ---------~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~-~---~~~I~~~d~~g---- 184 (335)
.....|++++..+++. ...... +.. .....++.+++||+ ++++.. . ...|+.+|.++
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~--~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF--PDE-PKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC--TTC-TTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEecc--CCC-CeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 1124699999987652 111121 111 23345789999996 444322 2 57899999764
Q ss_pred --c---EEEEecCCccccccccccccccCeEEEccCC-eEEEEECC---CCEEEEEeCCCCce-e-EEEEeccCCcCCCC
Q 039428 185 --Q---LLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMC---SGNLFKIDIRKEEE-E-VKLIELRGGSSLSL 253 (335)
Q Consensus 185 --~---~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~---~~~v~~~d~~~~~~-~-~~~~~~~g~~~~~~ 253 (335)
. ...+... .....-.++++| .||+.... +.+|+++|+++++. . ..++.-.. ...
T Consensus 273 ~~~~~~~~~l~~~------------~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~---~~~ 337 (710)
T 2xdw_A 273 ITGILKWVKLIDN------------FEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE---KDV 337 (710)
T ss_dssp SCSSCCCEEEECS------------SSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS---SCE
T ss_pred cCCccceEEeeCC------------CCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC---CCe
Confidence 2 2222110 012223578888 77766543 45899999987520 1 23332111 112
Q ss_pred CCeEEEcCCCcEEEEec--CCCeEEEEEcCCC
Q 039428 254 GDGLALLSPTKLVVAGN--PYPSARLVESSDG 283 (335)
Q Consensus 254 pdGia~d~~g~l~va~~--~~~~~~v~~~~~~ 283 (335)
..++++.+++.++++.. +...+++++..++
T Consensus 338 ~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCYLHDVKNTLQLHDLATG 369 (710)
T ss_dssp EEEEEEETTTEEEEEEEETTEEEEEEEETTTC
T ss_pred EEEEEEEcCCEEEEEEEECCEEEEEEEECCCC
Confidence 45677776677777733 2234666665344
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.011 Score=58.00 Aligned_cols=207 Identities=17% Similarity=0.137 Sum_probs=110.8
Q ss_pred ceEEEeCCCCeEEEEEecC----------CC------C-c-cceEEEEECCCCeEEEEeecCCCcc-CCCCCC-ceeEC-
Q 039428 104 MGIAVDRPRNRLLVAFTDV----------LG------N-K-YSALAAYDLSTWKRLFLTQLSGKSE-EKSTAD-DIAVD- 162 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~----------~~------~-~-~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~p~-~~~vd- 162 (335)
..+++|++.+.+|+...+. .+ + . ...|+.+|+++|++++..+...... ....++ .+.++
T Consensus 249 ~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~ 328 (582)
T 1flg_A 249 QSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDY 328 (582)
T ss_dssp SCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEE
T ss_pred CCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEee
Confidence 3578898889999976421 11 0 0 1469999999999998765532100 011111 13333
Q ss_pred --CCCc---EEEEeCCCCeEEEEccC-CcEEEEecCC--------------------ccccc-------cc-----cc--
Q 039428 163 --AEGN---AYVTDVVSSKIWKVGVE-GQLLSIIRSP--------------------LFTAK-------EW-----YK-- 202 (335)
Q Consensus 163 --~~G~---lyV~d~~~~~I~~~d~~-g~~~~~~~~~--------------------~~~~~-------~~-----~~-- 202 (335)
.+|+ +++..+.++.++.+|++ |+.+...... .+..+ .. .+
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 3563 45555667888888865 4443322110 00000 00 00
Q ss_pred -cccccCeEEEccCC-eEEEEEC--------------------------------CCCEEEEEeCCCCceeEEEEeccCC
Q 039428 203 -NVFGLNGIVYHPDG-FLIVIHM--------------------------------CSGNLFKIDIRKEEEEVKLIELRGG 248 (335)
Q Consensus 203 -~~~~p~Gia~~~dg-~Lyvad~--------------------------------~~~~v~~~d~~~~~~~~~~~~~~g~ 248 (335)
....-.++++||+. .+|+... ..+.|+.+|+.+++ .+-.++...
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~-~~W~~~~~~- 486 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGK-VVWEHKEHL- 486 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCC-EEEEEEESS-
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCC-EEEEecCCC-
Confidence 01112478999875 7777542 24789999998874 333343321
Q ss_pred cCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEE-eCCeEEEEeccCCC
Q 039428 249 SSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATV-KDGRVYLSHLLGLG 320 (335)
Q Consensus 249 ~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~-~~g~lyV~~~~~~~ 320 (335)
..-.|......|.+|+... .+.++.++...| +.+-++..+.....+-+++ .+|++||+...|.|
T Consensus 487 ---~~~~g~~~tagglvf~g~~-dg~l~A~D~~tG----~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G~g 551 (582)
T 1flg_A 487 ---PLWAGVLATAGNLVFTGTG-DGYFKAFDAKSG----KELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYG 551 (582)
T ss_dssp ---CCCSCCEEETTTEEEEECT-TSEEEEEETTTC----CEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred ---CCcccceEeCCCEEEEECC-CCcEEEEECCCC----CEEEEecCCCCcccCceEEEECCEEEEEEEccCC
Confidence 1112333345677888644 467888887665 2233333232222222555 59999996666543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0001 Score=71.92 Aligned_cols=182 Identities=15% Similarity=0.075 Sum_probs=102.6
Q ss_pred eeeEEcCCCC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEE-EEecCCCCccce
Q 039428 52 ETAKWDDVGR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLV-AFTDVLGNKYSA 129 (335)
Q Consensus 52 egia~d~~g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v-~~~D~~~~~~~~ 129 (335)
...+|+++|+ +++++...+.+..+|..+++ .. ++...+. ..++++| +|+.++ +..|..+. ..
T Consensus 113 ~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~-----~~--~l~~~~~------~~~~~sp-DG~~la~~~~~~~~~--~~ 176 (582)
T 3o4h_A 113 RILSGVDTGEAVVFTGATEDRVALYALDGGG-----LR--ELARLPG------FGFVSDI-RGDLIAGLGFFGGGR--VS 176 (582)
T ss_dssp EEEEEEECSSCEEEEEECSSCEEEEEEETTE-----EE--EEEEESS------CEEEEEE-ETTEEEEEEEEETTE--EE
T ss_pred eeeeeCCCCCeEEEEecCCCCceEEEccCCc-----EE--EeecCCC------ceEEECC-CCCEEEEEEEcCCCC--eE
Confidence 3557888875 45565444555567754343 12 1322221 5788998 555544 33332221 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCC--eEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSS--KIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~--~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
|+++|+++++....... ....+.++++|||+.+++....+ .|+++|.+++..+.+... ...........+
T Consensus 177 i~~~d~~~g~~~~l~~~------~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~ 248 (582)
T 3o4h_A 177 LFTSNLSSGGLRVFDSG------EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELP--SKDFSSYRPTAI 248 (582)
T ss_dssp EEEEETTTCCCEEECCS------SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCS--CSHHHHHCCSEE
T ss_pred EEEEcCCCCCceEeecC------CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCC--CcChhhhhhccc
Confidence 99999988876532211 23447899999997444444445 899999987654433211 100000000112
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
...+++|||.+|++...++++..++. +. ... ... .....+++. +|+++++
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~~-g~--~~~---~~~----~~v~~~~~s-dg~~l~~ 298 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFID-GE--RVE---APQ----GNHGRVVLW-RGKLVTS 298 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEET-TE--EEC---CCS----SEEEEEEEE-TTEEEEE
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEEE-CC--eec---cCC----CceEEEEec-CCEEEEE
Confidence 33449999988888777888777777 32 221 111 124578888 8876665
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.011 Score=58.28 Aligned_cols=202 Identities=14% Similarity=0.107 Sum_probs=108.5
Q ss_pred eEEEeCCCCeEEEEEecCC--------CCc--cceEEEEECCCCeEEEEeecCCCcc-CCCCCCc-eeEC---CCC---c
Q 039428 105 GIAVDRPRNRLLVAFTDVL--------GNK--YSALAAYDLSTWKRLFLTQLSGKSE-EKSTADD-IAVD---AEG---N 166 (335)
Q Consensus 105 Gi~~d~~~g~l~v~~~D~~--------~~~--~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~p~~-~~vd---~~G---~ 166 (335)
.+++|++.+.+|+...+.. ++. .+.|+.+|+++|++++..+...... ....++. +.+| .+| .
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~ 324 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK 324 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence 5688888899999654320 000 1469999999999997766532100 0011111 2333 456 4
Q ss_pred EEEEeCCCCeEEEEccC-CcEEEEecCC----cc----------------c----------cccccccccccCeEEEccC
Q 039428 167 AYVTDVVSSKIWKVGVE-GQLLSIIRSP----LF----------------T----------AKEWYKNVFGLNGIVYHPD 215 (335)
Q Consensus 167 lyV~d~~~~~I~~~d~~-g~~~~~~~~~----~~----------------~----------~~~~~~~~~~p~Gia~~~d 215 (335)
+++.-..++.++.+|.+ |+.+...... +. . .|+ ......-.++++||+
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~-~~Gg~~w~~~a~dp~ 403 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPS-AMGYHNQGHDSYDPK 403 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSC-TTCSSCSCBCEEETT
T ss_pred EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccC-cccccCCCCccCCCC
Confidence 56655667888888875 5443322100 00 0 000 001123468899997
Q ss_pred C-eEEEEEC--------------------------------------CCCEEEEEeCCCCceeEEEEeccCCcCCCCCCe
Q 039428 216 G-FLIVIHM--------------------------------------CSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDG 256 (335)
Q Consensus 216 g-~Lyvad~--------------------------------------~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdG 256 (335)
. .+|+... ..+.|+.+|+.+++ .+-..+... ..--|
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~-~~W~~~~~~----~~~~g 478 (599)
T 1w6s_A 404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGD-YKWEKMERF----AVWGG 478 (599)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCC-EEEEEEESS----CCCSB
T ss_pred CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCC-EEeEecCCC----CccCc
Confidence 6 5665421 23688889988774 333333221 11234
Q ss_pred EEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCC--CCCcceEEEE-eCCeEEEEeccCC
Q 039428 257 LALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGP--THRVATAATV-KDGRVYLSHLLGL 319 (335)
Q Consensus 257 ia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p--~~~~Pt~va~-~~g~lyV~~~~~~ 319 (335)
......|.+|++.. .+.++.++...| +.+-++..+ ....| +++ .+|++||....|.
T Consensus 479 ~~~tagg~vf~gt~-dg~l~A~D~~tG----~~lW~~~l~~g~~~~P--~~y~~~G~qyv~~~~G~ 537 (599)
T 1w6s_A 479 TMATAGDLVFYGTL-DGYLKARDSDTG----DLLWKFKIPSGAIGYP--MTYTHKGTQYVAIYYGV 537 (599)
T ss_dssp CEEETTTEEEEECT-TSEEEEEETTTC----CEEEEEECSSCCCSCC--EEEEETTEEEEEEEECC
T ss_pred ceEecCCEEEEECC-CCeEEEEECCCC----CEEEEeeCCCCcEecc--EEEEeCCEEEEEEEccC
Confidence 33345678888644 367888887766 222222222 22223 444 5999999655554
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0007 Score=60.74 Aligned_cols=201 Identities=10% Similarity=0.072 Sum_probs=106.7
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEE--eCCCCeEEEEEecCCCC
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAV--DRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~--d~~~g~l~v~~~D~~~~ 125 (335)
.....+++|+++++.+++...++.|..||..++. .. ...... .....+++ ++ +++++++....
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----~~--~~~~~~----~~v~~~~~~~~~-~~~~l~~~~~d--- 150 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ-----AI--QIAQHD----APVKTIHWIKAP-NYSCVMTGSWD--- 150 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EE--EEEECS----SCEEEEEEEECS-SCEEEEEEETT---
T ss_pred cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC-----ce--eecccc----CceEEEEEEeCC-CCCEEEEccCC---
Confidence 3346789999999988888889999999965443 11 122211 25678888 65 56555542221
Q ss_pred ccceEEEEECCCCeEEEEeecCCCc------------------------------------cCCCCCCceeECCCC----
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKS------------------------------------EEKSTADDIAVDAEG---- 165 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~------------------------------------~~~~~p~~~~vd~~G---- 165 (335)
+.|..||.++++........... ........+++.+++
T Consensus 151 --g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (368)
T 3mmy_A 151 --KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKP 228 (368)
T ss_dssp --SEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCE
T ss_pred --CcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCC
Confidence 35888888766533222111000 000011111221111
Q ss_pred cEEEEeCCCCeEEEEccCCcE----EEEecCCccc-cc-cccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCcee
Q 039428 166 NAYVTDVVSSKIWKVGVEGQL----LSIIRSPLFT-AK-EWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEE 239 (335)
Q Consensus 166 ~lyV~d~~~~~I~~~d~~g~~----~~~~~~~~~~-~~-~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~ 239 (335)
..+++.+..+.|..++.+... ...+....-. .. .........+.++++|++.++++-..++.|..+|....+ .
T Consensus 229 ~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~-~ 307 (368)
T 3mmy_A 229 TGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART-K 307 (368)
T ss_dssp EEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-E
T ss_pred CeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc-E
Confidence 124444555666666654321 1111000000 00 000001137899999999666666678899999998763 3
Q ss_pred EEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 240 VKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 240 ~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
...+. + . ......+++.++|.++++..
T Consensus 308 ~~~~~--~-~-~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 308 LKTSE--Q-L-DQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp EEECC--C-C-SSCEEEEEECTTSSCEEEEE
T ss_pred EEEec--C-C-CCCceEEEECCCCCeEEEEe
Confidence 33333 2 1 13367899999997666643
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0098 Score=55.18 Aligned_cols=198 Identities=13% Similarity=0.131 Sum_probs=119.6
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
+|..-++|+++ +++.++. +++|+.||..+++ +.. .+...+. ......|++++ +|+++++.... .
T Consensus 106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~----~~~---~~~~~~~-~~~V~sv~fsp-dg~~lasgs~D-----g 169 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGD----ILQ---LLQMEQP-GEYISSVAWIK-EGNYLAVGTSS-----A 169 (420)
T ss_dssp TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCC----EEE---EEECCST-TCCEEEEEECT-TSSEEEEEETT-----S
T ss_pred ccceeEEECCC-CEEEEEe-CCEEEEEECCCCC----EEE---EEEecCC-CCcEEEEEECC-CCCEEEEEECC-----C
Confidence 45677899875 5666654 8899999976665 122 3322221 13568999998 55555432211 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc--EEEEecCCccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ--LLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~--~~~~~~~~~~~~~~~~~~~~~ 206 (335)
.|..||.++++....... . .... .++..++++.++.+..+.+..++.... ....+.. ....
T Consensus 170 ~v~iWd~~~~~~~~~~~~--h---~~~v--~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~----------h~~~ 232 (420)
T 4gga_A 170 EVQLWDVQQQKRLRNMTS--H---SARV--GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG----------HSQE 232 (420)
T ss_dssp CEEEEETTTTEEEEEECC--C---SSCE--EEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC----------CSSC
T ss_pred eEEEEEcCCCcEEEEEeC--C---CCce--EEEeeCCCEEEEEeCCCceeEeeecccceeeEEecc----------cccc
Confidence 599999999887644322 1 1222 344456778888888889988886542 2221211 1123
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCce---eEEEEeccCCcCCCCCCeEEEcCCC-cEEEEe--cCCCeEEEEEc
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEE---EVKLIELRGGSSLSLGDGLALLSPT-KLVVAG--NPYPSARLVES 280 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~---~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~--~~~~~~~v~~~ 280 (335)
..++.++++|..+++-..++.+..++...++. ...... . . ......+++.+.+ .++++. ...+.+++.+.
T Consensus 233 ~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~--~-~-~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~ 308 (420)
T 4gga_A 233 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT--Q-H-QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC--C-C-SSCEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred eeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeec--c-c-CCceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence 67899999997777777888898888876521 111221 1 1 1224567777765 455442 23356777777
Q ss_pred CCC
Q 039428 281 SDG 283 (335)
Q Consensus 281 ~~~ 283 (335)
..+
T Consensus 309 ~t~ 311 (420)
T 4gga_A 309 CSG 311 (420)
T ss_dssp TTT
T ss_pred Ccc
Confidence 655
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00028 Score=74.07 Aligned_cols=180 Identities=15% Similarity=0.044 Sum_probs=110.1
Q ss_pred ceeeeEEc-CCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWD-DVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d-~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
...+++|+ |+|+.+++.. .+.|+.++..++. .. .+ ....+.....++++ ++..|+.+ .+. .
T Consensus 297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-----~~---~~--~~~~~~~~~~~~~s-dg~~l~~~-s~~-----~ 358 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-----VL---KV--PEPLRIRYVRRGGD-TKVAFIHG-TRE-----G 358 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-----EE---EC--SCCSCEEEEEECSS-SEEEEEEE-ETT-----E
T ss_pred ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-----eE---Ec--cCCCcceEEeeeEc-CCCeEEEE-ECC-----C
Confidence 36789999 9998666554 7899999854333 11 11 11111134566666 44455553 331 4
Q ss_pred eEE-EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEE-EecCCccccccccccccc
Q 039428 129 ALA-AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLS-IIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~-~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~-~~~~~~~~~~~~~~~~~~ 206 (335)
.++ .+|.++++... +.. . ...+..++++|||+..++....+.|+.+|.+++... ++.. ....
T Consensus 359 ~l~~~~d~~~~~~~~---l~~--~-~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~----------~~~~ 422 (1045)
T 1k32_A 359 DFLGIYDYRTGKAEK---FEE--N-LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS----------REAM 422 (1045)
T ss_dssp EEEEEEETTTCCEEE---CCC--C-CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC----------SSSC
T ss_pred ceEEEEECCCCCceE---ecC--C-ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC----------CCCC
Confidence 698 99998876542 211 1 345678999999985555566789999998754433 2211 0112
Q ss_pred cCeEEEccCC-eEEEEECC---------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEe
Q 039428 207 LNGIVYHPDG-FLIVIHMC---------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAG 269 (335)
Q Consensus 207 p~Gia~~~dg-~Lyvad~~---------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~ 269 (335)
...++++||| +|.++... .+.|+.+|++++ ....+. + . ......+++.++|+ ||++.
T Consensus 423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g--~~~~l~--~-~-~~~~~~~~~spdG~~l~~~s 490 (1045)
T 1k32_A 423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--KIFAAT--T-E-NSHDYAPAFDADSKNLYYLS 490 (1045)
T ss_dssp CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT--EEEECS--C-S-SSBEEEEEECTTSCEEEEEE
T ss_pred ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC--cEEEee--C-C-CcccCCceEcCCCCEEEEEe
Confidence 5789999999 56555432 258999999886 433332 2 1 12345688999986 55553
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=5.9e-05 Score=73.03 Aligned_cols=113 Identities=14% Similarity=0.130 Sum_probs=75.5
Q ss_pred CCCCCceeECC-CCcEEEEeCC---------------------CCeEEEEccCCc------E--EEE-e-cCCcccc---
Q 039428 153 KSTADDIAVDA-EGNAYVTDVV---------------------SSKIWKVGVEGQ------L--LSI-I-RSPLFTA--- 197 (335)
Q Consensus 153 ~~~p~~~~vd~-~G~lyV~d~~---------------------~~~I~~~d~~g~------~--~~~-~-~~~~~~~--- 197 (335)
+.+|.+++++| +|.+|++-+. .|.|+++..++. + ..+ + +++.-..
T Consensus 383 mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~ 462 (592)
T 4a9v_A 383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP 462 (592)
T ss_dssp EECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred ccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccc
Confidence 68899999998 5899998543 278999986532 1 111 1 1111000
Q ss_pred -c-----cccccccccCeEEEccCCeEEE-EECC-----------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEE
Q 039428 198 -K-----EWYKNVFGLNGIVYHPDGFLIV-IHMC-----------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLAL 259 (335)
Q Consensus 198 -~-----~~~~~~~~p~Gia~~~dg~Lyv-ad~~-----------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~ 259 (335)
. .....+.+||+|+++++|.||+ +|.. ++.|+++++..+ .+..+.... . ...|.|+++
T Consensus 463 ~~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG--el~~fl~~P-~-~aEpnGiaf 538 (592)
T 4a9v_A 463 KGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG--EIRRFMVGP-I-GCEVTGISF 538 (592)
T ss_dssp GGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTC--CEEEEEECC-T-TCEEEEEEE
T ss_pred ccCccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCC--eEEEEEeCC-C-CccccCCEE
Confidence 0 0112467899999999999999 7753 458999999776 455553211 1 245899999
Q ss_pred cCCC-cEEEEe
Q 039428 260 LSPT-KLVVAG 269 (335)
Q Consensus 260 d~~g-~l~va~ 269 (335)
.+|+ .|||+-
T Consensus 539 SPD~ktLfV~v 549 (592)
T 4a9v_A 539 SPDQKTLFVGI 549 (592)
T ss_dssp CTTSSEEEEEE
T ss_pred CCCCCEEEEEE
Confidence 9998 588883
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.01 Score=59.35 Aligned_cols=168 Identities=13% Similarity=0.030 Sum_probs=94.6
Q ss_pred CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC---------CCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 60 GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV---------GNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 60 g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~---------~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
++.+|+...++.|+.+|..+|+ ++ |-...... .....+++++ +++||+...| ..|
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~----~~----W~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~v~v~~~d------g~l 140 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGN----RI----WTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWD------GRL 140 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTE----EE----EEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTT------SEE
T ss_pred CCEEEEECCCCeEEEEECCCCc----EE----EEEcCCCCccccccccccCCCCCceEE--CCEEEEEcCC------CEE
Confidence 3455666557899999976665 11 32222110 0123467776 6899995333 359
Q ss_pred EEEECCCCeEEEEeecC-CCccCCCCCCceeECCCCcEEEEeCC-----CCeEEEEccC-CcEEEEecCCccc--cc---
Q 039428 131 AAYDLSTWKRLFLTQLS-GKSEEKSTADDIAVDAEGNAYVTDVV-----SSKIWKVGVE-GQLLSIIRSPLFT--AK--- 198 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~-~~~~~~~~p~~~~vd~~G~lyV~d~~-----~~~I~~~d~~-g~~~~~~~~~~~~--~~--- 198 (335)
+.+|.++|++++..... .............++ +|.+||.... .+.|+.+|.. |+.+..+....-. .+
T Consensus 141 ~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~ 219 (677)
T 1kb0_A 141 IALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFED 219 (677)
T ss_dssp EEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSS
T ss_pred EEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccc
Confidence 99999999998776653 111101111122232 5789997653 5899999975 6665433211000 00
Q ss_pred --------ccc---------ccccccCeEEEccCC-eEEEEECCC------------------CEEEEEeCCCCceeEEE
Q 039428 199 --------EWY---------KNVFGLNGIVYHPDG-FLIVIHMCS------------------GNLFKIDIRKEEEEVKL 242 (335)
Q Consensus 199 --------~~~---------~~~~~p~Gia~~~dg-~Lyvad~~~------------------~~v~~~d~~~~~~~~~~ 242 (335)
.+. .....-..+++|+++ .||+..... +.|+.+|+++++ .+..
T Consensus 220 ~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~-~~W~ 298 (677)
T 1kb0_A 220 ESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK-YKWH 298 (677)
T ss_dssp HHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC-EEEE
T ss_pred cccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC-EEEE
Confidence 000 000112468999976 788765432 369999999874 4444
Q ss_pred Eec
Q 039428 243 IEL 245 (335)
Q Consensus 243 ~~~ 245 (335)
+..
T Consensus 299 ~~~ 301 (677)
T 1kb0_A 299 YQE 301 (677)
T ss_dssp EES
T ss_pred Eec
Confidence 443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0052 Score=61.35 Aligned_cols=200 Identities=15% Similarity=0.192 Sum_probs=101.9
Q ss_pred eEEEeCCCCeEEEEEecCC-----------CCc--cceEEEEECCCCeEEEEeecCCCcc-CC--CCC---CceeECCCC
Q 039428 105 GIAVDRPRNRLLVAFTDVL-----------GNK--YSALAAYDLSTWKRLFLTQLSGKSE-EK--STA---DDIAVDAEG 165 (335)
Q Consensus 105 Gi~~d~~~g~l~v~~~D~~-----------~~~--~~~v~~~d~~~~~~~~~~~~~~~~~-~~--~~p---~~~~vd~~G 165 (335)
.+++|++.+.+|+...+.. ++. ...|+.+|+++|++++......... .. ..| .++.+ +|
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~--~G 311 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI--DG 311 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--TT
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc--CC
Confidence 4789987899999643321 000 1259999999999997766531100 00 011 12223 33
Q ss_pred c---EEEEeCCCCeEEEEccC-CcEEEEecCC---c------------------cc------cccccccccccCeEEEcc
Q 039428 166 N---AYVTDVVSSKIWKVGVE-GQLLSIIRSP---L------------------FT------AKEWYKNVFGLNGIVYHP 214 (335)
Q Consensus 166 ~---lyV~d~~~~~I~~~d~~-g~~~~~~~~~---~------------------~~------~~~~~~~~~~p~Gia~~~ 214 (335)
+ +++....++.++.+|.+ |+.+....-. | +. .|. ......-.+++++|
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~-~~G~~~w~~~a~dp 390 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPS-PFGAHNWHSMSFNP 390 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSC-TTCSSCSSCCEEET
T ss_pred cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCC-CccccCCCcceECC
Confidence 2 33333456667777654 4433111000 0 00 000 00112235689999
Q ss_pred CC-eEEEEEC-----------------------------------CCCEEEEEeCCCCceeEEEEeccCCcCCCCCCe-E
Q 039428 215 DG-FLIVIHM-----------------------------------CSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDG-L 257 (335)
Q Consensus 215 dg-~Lyvad~-----------------------------------~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdG-i 257 (335)
+. .+|+... ..+.|+.+|+.+++ .+..+.... . ..+ .
T Consensus 391 ~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~-~~W~~~~~~----~-~~~~~ 464 (668)
T 1kv9_A 391 GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQK-AAWKVPYPT----H-WNGGT 464 (668)
T ss_dssp TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTE-EEEEEEESS----S-CCCCE
T ss_pred CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCc-EEEEccCCC----C-CcCce
Confidence 76 7777321 12789999998874 333333321 1 233 3
Q ss_pred EEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEE-eCCeEEEEeccC
Q 039428 258 ALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATV-KDGRVYLSHLLG 318 (335)
Q Consensus 258 a~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~-~~g~lyV~~~~~ 318 (335)
.....|.+|+... .+.+++++...+ +.+.++..+.....+-+++ .+|++||+...|
T Consensus 465 ~~t~gg~vf~g~~-dg~l~a~d~~tG----~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 465 LSTAGNLVFQGTA-AGQMHAYSADKG----EALWQFEAQSGIVAAPMTFELAGRQYVAIMAG 521 (668)
T ss_dssp EEETTTEEEEECT-TSEEEEEETTTC----CEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred eEeCCCEEEEECC-cccchhhhhhcC----hhheEecCCCCcccCceEEEECCEEEEEEEec
Confidence 3344567777743 467888887665 2333332222111122444 589999855554
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00027 Score=64.54 Aligned_cols=182 Identities=12% Similarity=0.070 Sum_probs=98.5
Q ss_pred eeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcce--E----------------EEeCCCCe
Q 039428 53 TAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMG--I----------------AVDRPRNR 114 (335)
Q Consensus 53 gia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~G--i----------------~~d~~~g~ 114 (335)
+++|+|+|+.++.....+.|+++|..+++ .. .+...+.. ..+.| | .+.|+...
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~-----~~--~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~ 155 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLE-----EQ--VIYTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSW 155 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCC-----EE--EEEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCC-----cE--EEEecccc--cCCCCCEEEeccCCccccccccccccCCCCcc
Confidence 37899999987666566789999965443 11 12221210 01111 1 11221111
Q ss_pred EEEEEecC-CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCc-EEE-EeCCC----CeEEEEccCCcE
Q 039428 115 LLVAFTDV-LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGN-AYV-TDVVS----SKIWKVGVEGQL 186 (335)
Q Consensus 115 l~v~~~D~-~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~-lyV-~d~~~----~~I~~~d~~g~~ 186 (335)
+.+ ... .......|+++|.++++....... ......++++| +|+ +++ ++... .+|+.++.++..
T Consensus 156 ~~~--~~~~~~~~~~~l~~~d~~~g~~~~~~~~------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (396)
T 3c5m_A 156 EKF--AEFYHTNPTCRLIKVDIETGELEVIHQD------TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN 227 (396)
T ss_dssp HHH--HHHHHTCCCEEEEEEETTTCCEEEEEEE------SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC
T ss_pred eee--eeeccCCCcceEEEEECCCCcEEeeccC------CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc
Confidence 211 110 001114699999988876533321 23456788889 675 444 43222 589999987654
Q ss_pred EEEecCCccccccccccccccCeEEEccCC-eEEEEEC--CC--CEEEEEeCCCCceeEEEEe-ccCCcCCCCCCeEEEc
Q 039428 187 LSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHM--CS--GNLFKIDIRKEEEEVKLIE-LRGGSSLSLGDGLALL 260 (335)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~--~~--~~v~~~d~~~~~~~~~~~~-~~g~~~~~~pdGia~d 260 (335)
.+.+.. .. ....+..++++||| .|+++.. .. +.|+++|+.++ ....+. ..+ .. +++.
T Consensus 228 ~~~l~~---~~-----~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g--~~~~l~~~~~------~~-~~~s 290 (396)
T 3c5m_A 228 VRKIKE---HA-----EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL--ENEEVMVMPP------CS-HLMS 290 (396)
T ss_dssp CEESSC---CC-----TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC--CEEEEEECCS------EE-EEEE
T ss_pred eeEeec---cC-----CCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC--CeEEeeeCCC------CC-CCcc
Confidence 332211 00 01236678999999 5655432 23 34999999876 333332 221 11 7788
Q ss_pred C-CCcEEEE
Q 039428 261 S-PTKLVVA 268 (335)
Q Consensus 261 ~-~g~l~va 268 (335)
+ +|++++.
T Consensus 291 ~~dg~~l~~ 299 (396)
T 3c5m_A 291 NFDGSLMVG 299 (396)
T ss_dssp CSSSSEEEE
T ss_pred CCCCceEEE
Confidence 8 8886665
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0037 Score=55.79 Aligned_cols=204 Identities=9% Similarity=-0.029 Sum_probs=117.8
Q ss_pred ceeeeEEcC--CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCC-CeEEEEEecCCCCc
Q 039428 50 LCETAKWDD--VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPR-NRLLVAFTDVLGNK 126 (335)
Q Consensus 50 ~pegia~d~--~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~-g~l~v~~~D~~~~~ 126 (335)
...+++|.+ ++++++....+++|..||..++.. .. .....+.. .....++++|+. +.++++.. ..
T Consensus 59 ~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~-----~~--~~~~~~h~-~~V~~v~~~p~~~g~~lasgs-~D--- 126 (316)
T 3bg1_A 59 PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW-----EK--SHEHAGHD-SSVNSVCWAPHDYGLILACGS-SD--- 126 (316)
T ss_dssp CEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC-----CE--EEEECCCS-SCCCEEEECCTTTCSCEEEEC-SS---
T ss_pred cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc-----eE--EEEccCCC-CceEEEEECCCCCCcEEEEEc-CC---
Confidence 456889975 377777778899999998654431 10 11112111 256789998742 55555422 21
Q ss_pred cceEEEEECCCCe-EEEEeecCCCccCCCCCCceeECCC-----------------CcEEEEeCCCCeEEEEccCCc--E
Q 039428 127 YSALAAYDLSTWK-RLFLTQLSGKSEEKSTADDIAVDAE-----------------GNAYVTDVVSSKIWKVGVEGQ--L 186 (335)
Q Consensus 127 ~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~p~~~~vd~~-----------------G~lyV~d~~~~~I~~~d~~g~--~ 186 (335)
..|..||.+++. ......... . ....+.+++.|+ ++.+++.+..+.|..+|.... .
T Consensus 127 -~~i~lwd~~~~~~~~~~~~~~~--h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~ 202 (316)
T 3bg1_A 127 -GAISLLTYTGEGQWEVKKINNA--H-TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW 202 (316)
T ss_dssp -SCEEEEEECSSSCEEECCBTTS--S-SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE
T ss_pred -CCEEEEecCCCCCcceeeeecc--c-cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc
Confidence 358888887652 211111111 1 233456677665 457777777787777776532 1
Q ss_pred EEEecCCccccccccccccccCeEEEccCC----eEEEEECCCCEEEEEeCCCCc---eeEEEEeccCCcCCCCCCeEEE
Q 039428 187 LSIIRSPLFTAKEWYKNVFGLNGIVYHPDG----FLIVIHMCSGNLFKIDIRKEE---EEVKLIELRGGSSLSLGDGLAL 259 (335)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg----~Lyvad~~~~~v~~~d~~~~~---~~~~~~~~~g~~~~~~pdGia~ 259 (335)
... . .+.. .....+.++++|++ .++++-..+++|...+..... .....+.... .....+++
T Consensus 203 ~~~-~--~l~~-----h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~----~~v~~v~~ 270 (316)
T 3bg1_A 203 KEE-Q--KLEA-----HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFN----DVVWHVSW 270 (316)
T ss_dssp EEE-E--CCBC-----CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECS----SCEEEEEE
T ss_pred cee-e--eccc-----CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCC----CcEEEEEE
Confidence 111 0 1111 11236889999986 677888889999988876521 0112222111 23568999
Q ss_pred cCCCcEEEEecCCCeEEEEEcC
Q 039428 260 LSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 260 d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.++|+++++....+.+++.+..
T Consensus 271 sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 271 SITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CTTTCCEEEEESSSCEEEEEEC
T ss_pred cCCCCEEEEEcCCCeEEEEEEC
Confidence 9999876664444668877754
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0055 Score=55.74 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=56.3
Q ss_pred CCCCceeECCCCcEEEEeCCCCe-EEEEccC-CcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEE
Q 039428 154 STADDIAVDAEGNAYVTDVVSSK-IWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKI 231 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~~-I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~ 231 (335)
...+.++++|+|++.++.+..+. |..+|.. ++....+..... ....+.++++|||.++++-..++.|..+
T Consensus 196 ~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h--------~~~v~~~~~s~~~~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 196 NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLD--------RADVVDMKWSTDGSKLAVVSDKWTLHVF 267 (355)
T ss_dssp SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTC--------CSCEEEEEECTTSCEEEEEETTCEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--------CCcEEEEEECCCCCEEEEEECCCEEEEE
Confidence 45678999999999999888897 9999986 555443321101 1237899999999877777788999999
Q ss_pred eCCCC
Q 039428 232 DIRKE 236 (335)
Q Consensus 232 d~~~~ 236 (335)
|+...
T Consensus 268 ~~~~~ 272 (355)
T 3vu4_A 268 EIFND 272 (355)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 98764
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.01 Score=59.41 Aligned_cols=84 Identities=14% Similarity=0.147 Sum_probs=46.9
Q ss_pred CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEE
Q 039428 226 GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAAT 305 (335)
Q Consensus 226 ~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va 305 (335)
+.|..+|+.+++ .+..++... ....|......|.+|++. ..+.++.++...| +.+-++..+.....+-++
T Consensus 455 g~l~A~D~~tG~-~~W~~~~~~----~~~~g~~~tagglvf~gt-~dg~l~a~D~~tG----~~lw~~~~~~~~~~~p~t 524 (689)
T 1yiq_A 455 GKLIAWDPVKQQ-AAWEVPYVT----IFNGGTLSTAGNLVFEGS-ADGRVIAYAADTG----EKLWEQPAASGVMAAPVT 524 (689)
T ss_dssp EEEEEEETTTTE-EEEEEEESS----SCCCCEEEETTTEEEEEC-TTSEEEEEETTTC----CEEEEEECSSCCCSCCEE
T ss_pred eeEEEEECCCCC-eEeEccCCC----CccCccceECCCEEEEEC-CCCcEEEEECCCC----ccceeeeCCCCcccCceE
Confidence 779999998874 333344321 112244444555666664 3477888887766 233333323222222355
Q ss_pred E-eCCeEEEEeccCC
Q 039428 306 V-KDGRVYLSHLLGL 319 (335)
Q Consensus 306 ~-~~g~lyV~~~~~~ 319 (335)
+ .+|+.||+...|.
T Consensus 525 y~~~G~qyv~~~~G~ 539 (689)
T 1yiq_A 525 YSVDGEQYVTFMAGW 539 (689)
T ss_dssp EEETTEEEEEEEECC
T ss_pred EEECCEEEEEEEecC
Confidence 5 5899999655553
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.015 Score=54.07 Aligned_cols=188 Identities=13% Similarity=0.093 Sum_probs=108.7
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEE
Q 039428 55 KWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYD 134 (335)
Q Consensus 55 a~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d 134 (335)
++..+++.++++..++.|..||..+++. .. .+.... .....+.++ ++.|+++..| +.|..||
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~----~~---~~~~h~---~~v~~l~~~--~~~l~sg~~d------g~i~vwd 199 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLEC----KR---ILTGHT---GSVLCLQYD--ERVIITGSSD------STVRVWD 199 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCE----EE---EECCCS---SCEEEEECC--SSEEEEEETT------SCEEEEE
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeE----EE---EEcCCC---CcEEEEEEC--CCEEEEEcCC------CeEEEEE
Confidence 4556788888878899999999654441 11 221111 244566663 4445553322 3599999
Q ss_pred CCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE-EEEecCCccccccccccccccCeEEEc
Q 039428 135 LSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAKEWYKNVFGLNGIVYH 213 (335)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~~~~~~~~~p~Gia~~ 213 (335)
.++++....... . ......++++ ++.+++.+..+.|..+|..... ..... .+.. .....+.+++
T Consensus 200 ~~~~~~~~~~~~--h---~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~-----~~~~v~~~~~- 264 (435)
T 1p22_A 200 VNTGEMLNTLIH--H---CEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRR--VLVG-----HRAAVNVVDF- 264 (435)
T ss_dssp SSSCCEEEEECC--C---CSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEE--EECC-----CSSCEEEEEE-
T ss_pred CCCCcEEEEEcC--C---CCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeee--EecC-----CCCcEEEEEe-
Confidence 998876643322 1 2344556664 4466777778899999876432 11000 0110 1122456666
Q ss_pred cCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 214 PDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 214 ~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
++..+++-..++.|..+|....+ ....+.... .....++++ ++++++....+.+++.+...+
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~----~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHK----RGIACLQYR--DRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCC-EEEEEECCS----SCEEEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred -CCCEEEEEeCCCeEEEEECCcCc-EEEEEcCCC----CcEEEEEeC--CCEEEEEeCCCeEEEEECCCC
Confidence 56555566678999999998874 444454221 223455553 555666444477888887654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.015 Score=50.80 Aligned_cols=205 Identities=11% Similarity=0.013 Sum_probs=106.6
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
...-.+++|+++|+.++++..++.|..|+..+++ .+. ...... .....+..+ +.+.++....
T Consensus 67 ~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~----~~~---~~~~h~---~~~~~~~~~---~~~l~s~~~~----- 128 (318)
T 4ggc_A 67 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK----RLR---NMTSHS---ARVGSLSWN---SYILSSGSRS----- 128 (318)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----EEE---EEECCS---SCEEEEEEE---TTEEEEEETT-----
T ss_pred CCeEEEEEECCCCCEEEEEECCCcEEEeecCCce----eEE---EecCcc---ceEEEeecC---CCEEEEEecC-----
Confidence 3345789999999988888889999999965444 121 221111 122333333 3343322211
Q ss_pred ceEEEEECCCCeEE-EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE------EE------------
Q 039428 128 SALAAYDLSTWKRL-FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL------LS------------ 188 (335)
Q Consensus 128 ~~v~~~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~------~~------------ 188 (335)
..+..++...+... ..... . ......+++.++|+.+++....+.|..+|..... ..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 203 (318)
T 4ggc_A 129 GHIHHHDVRVAEHHVATLSG----H-SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203 (318)
T ss_dssp SEEEEEETTSSSCEEEEEEC----C-SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEE
T ss_pred CceEeeecCCCceeEEEEcC----c-cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEE
Confidence 23555555543222 11111 0 2334456666666666665555666665543210 00
Q ss_pred ---------------------EecCCccccccccccccccCeEEEccCC-eEEEEE-CCCCEEEEEeCCCCceeEEEEec
Q 039428 189 ---------------------IIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIH-MCSGNLFKIDIRKEEEEVKLIEL 245 (335)
Q Consensus 189 ---------------------~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad-~~~~~v~~~d~~~~~~~~~~~~~ 245 (335)
++...................+++.+++ .++++. ..++.|..+|...++ .+..+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~-~~~~l~- 281 (318)
T 4ggc_A 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA-KVAELK- 281 (318)
T ss_dssp ECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC-EEEEEC-
T ss_pred ecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc-EEEEEc-
Confidence 0000000000000111235667788877 555443 357889999988764 444443
Q ss_pred cCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 246 RGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 246 ~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
+ + -.....+++.++|.++++....+.+++.+.
T Consensus 282 -g-H-~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 282 -G-H-TSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp -C-C-SSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred -C-C-CCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 2 2 133578899999987777554566777654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.025 Score=52.70 Aligned_cols=187 Identities=13% Similarity=0.184 Sum_probs=110.8
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
..+++++ ++.++++..++.|..||..+++ .+. .+.... .....+.++ ++.++++..| +.|
T Consensus 162 v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~----~~~---~~~~h~---~~v~~~~~~--~~~l~s~s~d------g~i 221 (445)
T 2ovr_B 162 VWSSQMR--DNIIISGSTDRTLKVWNAETGE----CIH---TLYGHT---STVRCMHLH--EKRVVSGSRD------ATL 221 (445)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEETTTTE----EEE---EECCCS---SCEEEEEEE--TTEEEEEETT------SEE
T ss_pred EEEEEec--CCEEEEEeCCCeEEEEECCcCc----EEE---EECCCC---CcEEEEEec--CCEEEEEeCC------CEE
Confidence 3566776 5667777788999999965443 111 221111 245677886 3556664333 369
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCccccccccccccccCe
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
..||..+++....... . ......+++ +|+.+++.+..+.|..+|.... ....+.. .......
T Consensus 222 ~~wd~~~~~~~~~~~~--~---~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~ 284 (445)
T 2ovr_B 222 RVWDIETGQCLHVLMG--H---VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG----------HTNRVYS 284 (445)
T ss_dssp EEEESSSCCEEEEEEC--C---SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC----------CSSCEEE
T ss_pred EEEECCCCcEEEEEcC--C---cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC----------CCCceEE
Confidence 9999998876643322 1 234455666 5666777777889999997643 3332211 0112456
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
+++ ++..+++-..++.|..+|...++ ....+. + . ......+.+ +++++++....+.+++.+...+
T Consensus 285 ~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~--~-~-~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 285 LQF--DGIHVVSGSLDTSIRVWDVETGN-CIHTLT--G-H-QSLTSGMEL--KDNILVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp EEE--CSSEEEEEETTSCEEEEETTTCC-EEEEEC--C-C-CSCEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred EEE--CCCEEEEEeCCCeEEEEECCCCC-EEEEEc--C-C-cccEEEEEE--eCCEEEEEeCCCeEEEEECCCC
Confidence 666 67555566678889999998764 444443 2 1 122344555 4555555444467888887654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.029 Score=52.18 Aligned_cols=191 Identities=14% Similarity=0.116 Sum_probs=113.0
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
...+++++ ++.+++...++.|..||..+++ .+. .+.... .....+.++ +..++++..| +.
T Consensus 201 ~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~----~~~---~~~~~~---~~v~~~~~~--~~~l~~~~~d------g~ 260 (445)
T 2ovr_B 201 TVRCMHLH--EKRVVSGSRDATLRVWDIETGQ----CLH---VLMGHV---AAVRCVQYD--GRRVVSGAYD------FM 260 (445)
T ss_dssp CEEEEEEE--TTEEEEEETTSEEEEEESSSCC----EEE---EEECCS---SCEEEEEEC--SSCEEEEETT------SC
T ss_pred cEEEEEec--CCEEEEEeCCCEEEEEECCCCc----EEE---EEcCCc---ccEEEEEEC--CCEEEEEcCC------CE
Confidence 34677775 4567777889999999965444 121 221111 245677774 4556554332 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
|..||.++++....... . ......+.+ +|+.+++.+..+.|..+|.. ++....+... .....
T Consensus 261 i~iwd~~~~~~~~~~~~--~---~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~~v~ 323 (445)
T 2ovr_B 261 VKVWDPETETCLHTLQG--H---TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH----------QSLTS 323 (445)
T ss_dssp EEEEEGGGTEEEEEECC--C---SSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC----------CSCEE
T ss_pred EEEEECCCCcEeEEecC--C---CCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC----------cccEE
Confidence 99999988876644322 1 234455666 67777777778999999976 4443322110 01133
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
.+++ ++.++++-..++.|..+|+..++ ....+...... ......++++ ++++++....+.+++.+...+
T Consensus 324 ~~~~--~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 324 GMEL--KDNILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKH-QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp EEEE--ETTEEEEEETTSCEEEEETTTCC-EEEEECSTTSC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred EEEE--eCCEEEEEeCCCeEEEEECCCCc-EEEEEccCCCC-CCCEEEEEEC--CCEEEEEeCCCeEEEEECCCC
Confidence 4444 56566666678899999998764 44555421111 1224566665 455555444577888887665
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00018 Score=61.29 Aligned_cols=102 Identities=16% Similarity=0.152 Sum_probs=68.3
Q ss_pred CCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-------EEEEecCCccccccccccccccCeEEEccCCeEEEEECCC
Q 039428 153 KSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-------LLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCS 225 (335)
Q Consensus 153 ~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-------~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~ 225 (335)
.....+++++|+|+||.. .++.+|++++... ..+.+++. .-.+-..+.++++|.||+. .+
T Consensus 40 w~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~---------Gw~~F~a~~fD~~G~LYav--~d 106 (236)
T 1tl2_A 40 WSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNG---------GWNQFQFLFFDPNGYLYAV--SK 106 (236)
T ss_dssp CTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECS---------CGGGCSEEEECTTSCEEEE--ET
T ss_pred cccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccc---------ccccceEEEECCCCCEEEe--CC
Confidence 456679999999999999 6779999998431 11222211 0112468999999999988 44
Q ss_pred CEEEEEeC--CCCc---eeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 226 GNLFKIDI--RKEE---EEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 226 ~~v~~~d~--~~~~---~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
++|+|+++ ++.. .....|...+ ...-+-+.++++|.||.+..
T Consensus 107 G~iyr~~pP~~~~~~Wl~~a~~vg~~g---w~~~~~lff~p~G~Lyav~d 153 (236)
T 1tl2_A 107 DKLYKASPPQSDTDNWIARATEVGSGG---WSGFKFLFFHPNGYLYAVHG 153 (236)
T ss_dssp TEEEEESCCCSTTCCHHHHSEEEECSS---GGGEEEEEECTTSCEEEEET
T ss_pred CEEEEeCCCcCCCCceeccccEeccCC---CCceEEEEECCCceEEEEeC
Confidence 99999987 3321 0112332222 12237899999999999983
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0038 Score=62.82 Aligned_cols=153 Identities=8% Similarity=0.048 Sum_probs=84.0
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCC--CcceEEEeCCCCeEEEEEecCCCC---c
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGN--ATMGIAVDRPRNRLLVAFTDVLGN---K 126 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~--~p~Gi~~d~~~g~l~v~~~D~~~~---~ 126 (335)
.+++|.++|..++.+ ++.|..+|..+++ .. .++........ ....+.++|+...|.....+.... .
T Consensus 20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ--ENNILVFNAEYGN-----SS--VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCEEECSSSEEEEEE--TTEEEEEETTTCC-----EE--EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred cccEECCCCcEEEEc--CCcEEEEECCCCc-----eE--EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence 488999999766665 8899999975554 11 23332221111 124578898545555543321110 0
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecC-Cc----ccc-cc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRS-PL----FTA-KE 199 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~-~~----~~~-~~ 199 (335)
...++.+|.++++... +... .......+++|||+ +.++ ..+.|+.++.++...+.+.. +. +.. ++
T Consensus 91 ~~~~~~~d~~~~~~~~---l~~~---~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~ 162 (740)
T 4a5s_A 91 TASYDIYDLNKRQLIT---EERI---PNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITD 162 (740)
T ss_dssp EEEEEEEETTTTEECC---SSCC---CTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCC
T ss_pred ceEEEEEECCCCcEEE---cccC---CCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCccc
Confidence 1358899999987642 2111 23445788999996 3333 23689999887544332211 00 000 00
Q ss_pred ---ccccccccCeEEEccCC-eEEEE
Q 039428 200 ---WYKNVFGLNGIVYHPDG-FLIVI 221 (335)
Q Consensus 200 ---~~~~~~~p~Gia~~~dg-~Lyva 221 (335)
.+..+....+++++||| +|.++
T Consensus 163 ~v~~ee~~~~~~~~~wSpDg~~la~~ 188 (740)
T 4a5s_A 163 WVYEEEVFSAYSALWWSPNGTFLAYA 188 (740)
T ss_dssp HHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred ccccchhcCCCcceEECCCCCEEEEE
Confidence 00001234579999999 56554
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0016 Score=59.26 Aligned_cols=169 Identities=6% Similarity=-0.063 Sum_probs=92.9
Q ss_pred ceeeeEEcC-CCC-EEEEEe-cC----CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 50 LCETAKWDD-VGR-RFLVSF-LD----GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 50 ~pegia~d~-~g~-~~~~~~-~~----~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
....++|+| +|+ ++|++. .. .+|+.++..++. .. .+. ... ....+..++++|++..|+.+..+.
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~--~l~-~~~-~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-----VR--KIK-EHA-EGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-----CE--ESS-CCC-TTEEEEEEEECTTSSCEEEEEEET
T ss_pred ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-----ee--Eee-ccC-CCccccceEECCCCCEEEEEecCC
Confidence 456889999 676 444443 22 479999853332 11 121 110 012356778998544565543322
Q ss_pred CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeC----------------CCCeEEEEccCCc
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDV----------------VSSKIWKVGVEGQ 185 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~----------------~~~~I~~~d~~g~ 185 (335)
.... ..|+++|+++++........ . .+ +++.+ ||++++... ....|+++|.+++
T Consensus 260 ~~~~-~~l~~~d~~~g~~~~l~~~~--~-----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 260 GQTD-RVIYKANPETLENEEVMVMP--P-----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp TTCC-EEEEEECTTTCCEEEEEECC--S-----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred CCcc-ceEEEEECCCCCeEEeeeCC--C-----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 2111 34999999988765433331 1 12 78888 998666532 3478999998754
Q ss_pred EEEEecCCcccccc-ccccccccCeEEEccCC-eEEEEECC--CCEEEEEeCCCC
Q 039428 186 LLSIIRSPLFTAKE-WYKNVFGLNGIVYHPDG-FLIVIHMC--SGNLFKIDIRKE 236 (335)
Q Consensus 186 ~~~~~~~~~~~~~~-~~~~~~~p~Gia~~~dg-~Lyvad~~--~~~v~~~d~~~~ 236 (335)
....+......... ..........++++||| .|+++... ..+||+++++++
T Consensus 331 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 331 SAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp BCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred ceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 43222110000000 00001124567899999 77766543 347999998876
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0013 Score=56.06 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=87.7
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCe-EEE---EeecCCCccCCCCCCceeECCCCcEEEEeCCCCeE
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWK-RLF---LTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKI 177 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~-~~~---~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I 177 (335)
....++++| +|.||++ .+ ..|+++++.+++ ..+ ...+... +-+....+.+|++|++|++ ..+.|
T Consensus 42 ~~~~laf~P-~G~LYaV-~~------G~Ly~~~~~t~~~~~W~~s~t~IG~~--Gw~~F~a~~fD~~G~LYav--~dG~i 109 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV-LN------DKIYKGTPPTHDNDNWMGRAKKIGNG--GWNQFQFLFFDPNGYLYAV--SKDKL 109 (236)
T ss_dssp TCSEEEECT-TSCEEEE-ET------TEEEEESCCCSTTCCHHHHCEEEECS--CGGGCSEEEECTTSCEEEE--ETTEE
T ss_pred cceeEEECC-CccEEEE-eC------CeEEEECCCCCCcccccccccEeccc--ccccceEEEECCCCCEEEe--CCCEE
Confidence 456999998 9999996 22 359999986521 000 0111000 1234667999999999999 34999
Q ss_pred EEEcc--CCcEE-----EEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEE-eCCCCc----eeEEEEec
Q 039428 178 WKVGV--EGQLL-----SIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKI-DIRKEE----EEVKLIEL 245 (335)
Q Consensus 178 ~~~d~--~g~~~-----~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~-d~~~~~----~~~~~~~~ 245 (335)
+|+++ ++... ..+++.. -....-|.++|+|.||... +++++|- .+.+.. .....+..
T Consensus 110 yr~~pP~~~~~~Wl~~a~~vg~~g---------w~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~ 178 (236)
T 1tl2_A 110 YKASPPQSDTDNWIARATEVGSGG---------WSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQ 178 (236)
T ss_dssp EEESCCCSTTCCHHHHSEEEECSS---------GGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEES
T ss_pred EEeCCCcCCCCceeccccEeccCC---------CCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceecc
Confidence 99998 33221 1111110 1125789999999999887 6667663 222221 01122221
Q ss_pred cCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 246 RGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 246 ~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
.+.. .++ =+.++++|+||.++. ..+....
T Consensus 179 ~g~~--~yr-~l~f~~~G~l~~v~~--g~~Y~~~ 207 (236)
T 1tl2_A 179 GGWD--TFK-FLFFSSVGTLFGVQG--GKFYEDY 207 (236)
T ss_dssp SSGG--GEE-EEEECTTSCEEEEET--TEEEEES
T ss_pred CCcc--eEE-EEEECCCCcEEEEeC--CeEEecC
Confidence 2211 112 266888899888874 5554443
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0011 Score=64.18 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=119.2
Q ss_pred eeeeEEcCC------CCEEEEEecCCeEEEEECCCCCCCcc-e--eee-eEEeecCCcCCCCcceEEEeCCCCeEEEEEe
Q 039428 51 CETAKWDDV------GRRFLVSFLDGGVGQVLVPDEYSPGT-V--LEE-VKLVKEDDVVGNATMGIAVDRPRNRLLVAFT 120 (335)
Q Consensus 51 pegia~d~~------g~~~~~~~~~~~I~~~d~~~g~~~~~-v--~~~-~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~ 120 (335)
...++|.|+ ++++.+...+++|..||...+..... . +.+ ...+... ......+++++ .+.|..+..
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h---~~~v~sv~~s~-~~~lasgs~ 285 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLA---DSLITTFDFLS-PTTVVCGFK 285 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCT---TTCEEEEEESS-SSEEEEEET
T ss_pred EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcC---CCCEEEEEecC-CCeEEEEeC
Confidence 567899986 45666668889999998654421000 0 000 0011111 13467888886 566555433
Q ss_pred cCCCCccceEEEEECCCCe-EEEEeecCCCccCCCCCCce--eECCCC-cEEEEeCCCCeEEEEccCCc-EEEEecCCcc
Q 039428 121 DVLGNKYSALAAYDLSTWK-RLFLTQLSGKSEEKSTADDI--AVDAEG-NAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLF 195 (335)
Q Consensus 121 D~~~~~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~p~~~--~vd~~G-~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~ 195 (335)
| +.|..||.++++ ....... . ....+.+ ++.++| +++++.+..+.|..+|.... ....+. ...
T Consensus 286 D------gtV~lWD~~~~~~~~~~~~~----H-~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~~ 353 (524)
T 2j04_B 286 N------GFVAEFDLTDPEVPSFYDQV----H-DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SRF 353 (524)
T ss_dssp T------SEEEEEETTBCSSCSEEEEC----S-SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EEC
T ss_pred C------CEEEEEECCCCCCceEEeec----c-cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-ccc
Confidence 3 369999998653 2111111 1 2345667 457788 89999899999999997532 111110 000
Q ss_pred ccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeE
Q 039428 196 TAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSA 275 (335)
Q Consensus 196 ~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~ 275 (335)
.......++++|++..+++-...+.|..+|+.... ....+. + . ......+++.|+|.++++....+.+
T Consensus 354 -------~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-~~~~l~--g-H-~~~V~sva~Sp~g~~l~Sgs~Dgtv 421 (524)
T 2j04_B 354 -------RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-AVHPLV--S-R-ETTITAIGVSRLHPMVLAGSADGSL 421 (524)
T ss_dssp -------SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-CCEEEE--E-C-SSCEEEEECCSSCCBCEEEETTTEE
T ss_pred -------ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-cceeee--c-C-CCceEEEEeCCCCCeEEEEECCCEE
Confidence 00125689999999778888888889999988763 333333 2 1 1335788888888776665544556
Q ss_pred EEEE
Q 039428 276 RLVE 279 (335)
Q Consensus 276 ~v~~ 279 (335)
++.+
T Consensus 422 ~lwd 425 (524)
T 2j04_B 422 IITN 425 (524)
T ss_dssp ECCB
T ss_pred EEEe
Confidence 5544
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.011 Score=54.59 Aligned_cols=210 Identities=10% Similarity=-0.002 Sum_probs=111.7
Q ss_pred ceeeeEEcC--------CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEec
Q 039428 50 LCETAKWDD--------VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD 121 (335)
Q Consensus 50 ~pegia~d~--------~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D 121 (335)
.-.+++|.| +|+++.....+++|..||..++.. .. ...... .....++++|++.+++++ +.
T Consensus 138 ~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~----~~--~~~~~~----~~v~~v~~~p~~~~~l~~-~~ 206 (393)
T 4gq1_A 138 FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP----IL--AGYPLS----SPGISVQFRPSNPNQLIV-GE 206 (393)
T ss_dssp CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE----EE--EEEECS----SCEEEEEEETTEEEEEEE-EE
T ss_pred ceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce----ee--eecCCC----CCcEEEEECCCCCceEEe-cC
Confidence 457889986 677666668899999998543331 11 122222 245789999844445443 22
Q ss_pred CCCCccceEEEEECCCCeEEEEeecC--------------CC------ccCCCCCCceeEC-CCCcEEEEeCCCCeEEEE
Q 039428 122 VLGNKYSALAAYDLSTWKRLFLTQLS--------------GK------SEEKSTADDIAVD-AEGNAYVTDVVSSKIWKV 180 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~~~~~~~~~~--------------~~------~~~~~~p~~~~vd-~~G~lyV~d~~~~~I~~~ 180 (335)
.. ..|..||..+++........ .. .........+++. ++|+..++.+..+.+..+
T Consensus 207 ~d----~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vw 282 (393)
T 4gq1_A 207 RN----GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRW 282 (393)
T ss_dssp TT----SEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEE
T ss_pred CC----CEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEE
Confidence 21 46999999877543111000 00 0001233445554 788888888888899888
Q ss_pred ccCCcE-EEEecC-------Ccccccc-ccccccccCeEEEccC--CeEEEEECCCCEEEEEeCCCCceeEEEEeccCCc
Q 039428 181 GVEGQL-LSIIRS-------PLFTAKE-WYKNVFGLNGIVYHPD--GFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGS 249 (335)
Q Consensus 181 d~~g~~-~~~~~~-------~~~~~~~-~~~~~~~p~Gia~~~d--g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~ 249 (335)
|..... ...+.. ..+.... .........+.++.+. +.+.++-..+++|..+|...++ .........
T Consensus 283 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~-~~~~~~~~~-- 359 (393)
T 4gq1_A 283 NLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD-SNSIPIQLG-- 359 (393)
T ss_dssp EC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT-CCEEEEECS--
T ss_pred ECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc-EEEEecCCC--
Confidence 865322 111100 0000000 0011122344555553 3555677778999999998764 222222111
Q ss_pred CCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 250 SLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 250 ~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
.....+++.++|+++++... +++.++++
T Consensus 360 --~~V~svafspdG~~LA~as~-~Gv~lvrL 387 (393)
T 4gq1_A 360 --MPIVDFCWHQDGSHLAIATE-GSVLLTRL 387 (393)
T ss_dssp --SCEEEEEECTTSSEEEEEES-SEEEEEEE
T ss_pred --CcEEEEEEcCCCCEEEEEeC-CCeEEEEE
Confidence 22578999999986666442 55666664
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.015 Score=58.05 Aligned_cols=204 Identities=11% Similarity=0.053 Sum_probs=108.9
Q ss_pred eeeEEcCCCCEEEEEecCC----------------eEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeE
Q 039428 52 ETAKWDDVGRRFLVSFLDG----------------GVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRL 115 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~----------------~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l 115 (335)
.+++|+|+|+.++.+...+ .|++++..++.. +...+...+... ....++.+++++..|
T Consensus 174 ~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~-----~~~~v~~~~~~~-~~~~~~~~SpDg~~l 247 (710)
T 2xdw_A 174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS-----EDILCAEFPDEP-KWMGGAELSDDGRYV 247 (710)
T ss_dssp CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG-----GCEEEECCTTCT-TCEEEEEECTTSCEE
T ss_pred ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc-----cceEEeccCCCC-eEEEEEEEcCCCCEE
Confidence 5799999998777663322 399998643331 111122222111 234688899855555
Q ss_pred EEEEecCCCCccceEEEEECCC------C--eEEEEeecCCCccCCCCCCceeECCCCc-EEEEeC---CCCeEEEEccC
Q 039428 116 LVAFTDVLGNKYSALAAYDLST------W--KRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV---VSSKIWKVGVE 183 (335)
Q Consensus 116 ~v~~~D~~~~~~~~v~~~d~~~------~--~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~---~~~~I~~~d~~ 183 (335)
++...+.... .+.|+.+|.++ + ........ .. ..--.++++|. +|+... .+.+|++++.+
T Consensus 248 ~~~~~~~~~~-~~~l~~~d~~~~~~~~~~~~~~~~l~~~------~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~ 319 (710)
T 2xdw_A 248 LLSIREGCDP-VNRLWYCDLQQESNGITGILKWVKLIDN------FE-GEYDYVTNEGTVFTFKTNRHSPNYRLINIDFT 319 (710)
T ss_dssp EEEEECSSSS-CCEEEEEEGGGSSSSSCSSCCCEEEECS------SS-SCEEEEEEETTEEEEEECTTCTTCEEEEEETT
T ss_pred EEEEEccCCC-ccEEEEEECcccccccCCccceEEeeCC------CC-cEEEEEeccCCEEEEEECCCCCCCEEEEEeCC
Confidence 5543322110 15799999876 4 23222111 01 11124667764 666543 25689999987
Q ss_pred CcE----EEEecCCccccccccccccccCeEEEccCCeEEEEECCCC--EEEEEeCCCCceeEEEEeccCCcCCCCCCeE
Q 039428 184 GQL----LSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSG--NLFKIDIRKEEEEVKLIELRGGSSLSLGDGL 257 (335)
Q Consensus 184 g~~----~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~--~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGi 257 (335)
+.. ..++... ......+++++++++|+++...++ +|+++++..++ ..+.+.... ....++
T Consensus 320 ~~~~~~~~~l~~~~---------~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~-~~~~l~~~~----~~v~~~ 385 (710)
T 2xdw_A 320 DPEESKWKVLVPEH---------EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA-LLKIFPLEV----GSVVGY 385 (710)
T ss_dssp SCCGGGCEEEECCC---------SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC-EEEEECCCS----SEEEEE
T ss_pred CCCcccceeccCCC---------CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC-EEEecCCCC----ceEEEE
Confidence 532 2222110 001256788887778877765554 78999985442 445554321 224567
Q ss_pred EEcCCC-cEEEE-ec--CCCeEEEEEcCCC
Q 039428 258 ALLSPT-KLVVA-GN--PYPSARLVESSDG 283 (335)
Q Consensus 258 a~d~~g-~l~va-~~--~~~~~~v~~~~~~ 283 (335)
++++++ .++++ .. ....+..++...+
T Consensus 386 ~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 386 SGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp ECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred ecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 777776 45555 22 1135666665443
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0049 Score=55.20 Aligned_cols=146 Identities=9% Similarity=0.041 Sum_probs=84.5
Q ss_pred eeeeEEcCCCCEEEEE-ecC----CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC--
Q 039428 51 CETAKWDDVGRRFLVS-FLD----GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL-- 123 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~~----~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~-- 123 (335)
...++|+|+|+.+++. ... ..|+.++..+++ .. .+...+ . ...++++|++..|+++..+..
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~-----~~--~l~~~~----~-~~~~~wspdg~~l~~~~~~~~~~ 128 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS-----SK--KILEAK----N-IRSLEWNEDSRKLLIVGFKRRED 128 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE-----EE--EEEEES----E-EEEEEECTTSSEEEEEEECCCC-
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc-----eE--EEEcCC----C-ccceeECCCCCEEEEEEccCCCc
Confidence 4578999999866555 332 359999864443 11 122222 1 567888885556666533210
Q ss_pred --------------C-----CccceEEEEECCCCeE-EEEeecCCCccCCCCCCceeECCCCcEEEEeCC---------C
Q 039428 124 --------------G-----NKYSALAAYDLSTWKR-LFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV---------S 174 (335)
Q Consensus 124 --------------~-----~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~---------~ 174 (335)
+ .....|+++|+++++. ..... . ....+++.||| ++++... .
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~ 199 (347)
T 2gop_A 129 EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKF 199 (347)
T ss_dssp --------CCCC---------CEEEEEEEETTTTEEEEEEEE-------E-TTCEEEEETTE-EEEEEECCCSSCCSSCC
T ss_pred CCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-------C-CcccccCCCCe-EEEEEeccccccccccc
Confidence 0 0125699999998876 32211 1 34578899999 6654321 3
Q ss_pred CeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECC-------CCEEEEEe
Q 039428 175 SKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMC-------SGNLFKID 232 (335)
Q Consensus 175 ~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~-------~~~v~~~d 232 (335)
..|+.++ .++...+... ... ..++||| .|++.... ..+|+.+|
T Consensus 200 ~~l~~~d-~~~~~~l~~~-------------~~~-~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 200 WDIYIWE-DGKEEKMFEK-------------VSF-YAVDSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp EEEEEEE-TTEEEEEEEE-------------ESE-EEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred ccEEEeC-CCceEEeccC-------------cce-eeECCCCCEEEEEEccccCCccccceEEEEC
Confidence 4799999 6554332210 011 1238899 66655432 36899999
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.016 Score=50.78 Aligned_cols=165 Identities=10% Similarity=0.008 Sum_probs=100.8
Q ss_pred CCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 46 SPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
+.......+++.++++.+++...++.|..||...++.. ... ...... .......++..+.+..+........ +
T Consensus 148 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~-~ 220 (318)
T 4ggc_A 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG---WVP--LQTFTQ-HQGAVKAVAWCPWQSNVLATGGGTS-D 220 (318)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB---SCC--SEEECC-CCSCEEEEEECTTSTTEEEEEECTT-T
T ss_pred CccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc---ccc--eeeecc-cCCceEEEEecCCCCcEEEEEecCC-C
Confidence 33445678899999998887788999999996544310 000 111111 1124466777765555554322221 2
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEE--eCCCCeEEEEccC-CcEEEEecCCccccccccc
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVT--DVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~--d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~ 202 (335)
..|..+|............ ......+.+.++++..++ ....+.|..+|.. ++.+..+..
T Consensus 221 --~~i~lwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g---------- 282 (318)
T 4ggc_A 221 --RHIRIWNVCSGACLSAVDA------HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG---------- 282 (318)
T ss_dssp --CEEEEEETTTCCEEEEEEC------SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC----------
T ss_pred --CEEEEEecccccccccccc------eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC----------
Confidence 3588899887765533222 234456788888764443 3457889999976 444443321
Q ss_pred cccccCeEEEccCCeEEEEECCCCEEEEEeCCC
Q 039428 203 NVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 203 ~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~ 235 (335)
.....+.++++|||.++++-..++.|...|+..
T Consensus 283 H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 283 HTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 112378899999997777777888887777653
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.03 Score=54.85 Aligned_cols=80 Identities=8% Similarity=0.049 Sum_probs=47.3
Q ss_pred CCeEEEEccC-CcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCC
Q 039428 174 SSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLS 252 (335)
Q Consensus 174 ~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~ 252 (335)
.+.|+.+|+. |+.+...... . ..-.|.....+|.+|++ +.++.|+.+|.++++ .+..+.+.. ....
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~---~-------~~~~g~~~tagglvf~g-~~dg~l~A~D~~tG~-~lW~~~~~~-g~~a 531 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH---L-------PLWAGVLATAGNLVFTG-TGDGYFKAFDAKSGK-ELWKFQTGS-GIVS 531 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES---S-------CCCSCCEEETTTEEEEE-CTTSEEEEEETTTCC-EEEEEECSS-CCCS
T ss_pred cceEEEEECCCCCEEEEecCC---C-------CCcccceEeCCCEEEEE-CCCCcEEEEECCCCC-EEEEecCCC-Cccc
Confidence 4678888876 4443321110 0 01123333446688876 467899999998875 555566543 2123
Q ss_pred CCCeEEEcCCCcEEEE
Q 039428 253 LGDGLALLSPTKLVVA 268 (335)
Q Consensus 253 ~pdGia~d~~g~l~va 268 (335)
.| |++..+|+.||+
T Consensus 532 ~P--~~y~~~G~qYv~ 545 (582)
T 1flg_A 532 PP--ITWEQDGEQYLG 545 (582)
T ss_dssp CC--EEEEETTEEEEE
T ss_pred Cc--eEEEECCEEEEE
Confidence 33 676678998888
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.03 Score=54.70 Aligned_cols=112 Identities=10% Similarity=0.016 Sum_probs=66.6
Q ss_pred CEEEEEec-CCeEEEEEC-CCCCCCcceeeeeEEeecCCcC-C--------CCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 61 RRFLVSFL-DGGVGQVLV-PDEYSPGTVLEEVKLVKEDDVV-G--------NATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 61 ~~~~~~~~-~~~I~~~d~-~~g~~~~~v~~~~~~~~~~~~~-~--------~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
+.+|+... ++.|+.+|. .+|+. + |....... . ....+++++ ++++|+...| ..
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~----~----W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~~d------g~ 126 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKI----V----WQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQAN------GH 126 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSE----E----EEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTT------SE
T ss_pred CEEEEEeCCCCEEEEEeCCCCccE----E----EEEcCCCCccccccccccccccccEEE--CCEEEEEeCC------CE
Confidence 45556644 789999997 67761 1 32221110 0 012467776 6899995332 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-----CCeEEEEccC-CcEEEE
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-----SSKIWKVGVE-GQLLSI 189 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-----~~~I~~~d~~-g~~~~~ 189 (335)
|+.+|.++|++++..................+. +|.+|+.... .+.|+.+|++ |+.+..
T Consensus 127 l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 127 LLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp EEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred EEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 999999999998776653211100111122232 5789998653 6899999986 666543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.014 Score=58.36 Aligned_cols=78 Identities=10% Similarity=-0.003 Sum_probs=47.3
Q ss_pred CeEEEEccC-CcEEEEecCCccccccccccccccCeEEEccC-CeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCC
Q 039428 175 SKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD-GFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLS 252 (335)
Q Consensus 175 ~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d-g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~ 252 (335)
+.|..+|+. |+.+.....+ ...++-.+... |.+|++ +.++.|+.+|.++++ .+..+.+.... ..
T Consensus 455 g~l~A~D~~tG~~~W~~~~~-----------~~~~~g~~~tagglvf~g-t~dg~l~a~D~~tG~-~lw~~~~~~~~-~~ 520 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYV-----------TIFNGGTLSTAGNLVFEG-SADGRVIAYAADTGE-KLWEQPAASGV-MA 520 (689)
T ss_dssp EEEEEEETTTTEEEEEEEES-----------SSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCC-EEEEEECSSCC-CS
T ss_pred eeEEEEECCCCCeEeEccCC-----------CCccCccceECCCEEEEE-CCCCcEEEEECCCCc-cceeeeCCCCc-cc
Confidence 668888886 4433221110 11223244444 467766 678999999999875 55566654322 33
Q ss_pred CCCeEEEcCCCcEEEE
Q 039428 253 LGDGLALLSPTKLVVA 268 (335)
Q Consensus 253 ~pdGia~d~~g~l~va 268 (335)
.| |++..+|+.||+
T Consensus 521 ~p--~ty~~~G~qyv~ 534 (689)
T 1yiq_A 521 AP--VTYSVDGEQYVT 534 (689)
T ss_dssp CC--EEEEETTEEEEE
T ss_pred Cc--eEEEECCEEEEE
Confidence 45 777778998888
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.039 Score=51.25 Aligned_cols=187 Identities=13% Similarity=0.148 Sum_probs=109.0
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
..++++ +++.++++..++.|..||..+++ .+. .+.... .....++++ ++.++.+..| +.|
T Consensus 176 v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~----~~~---~~~~h~---~~v~~l~~~--~~~l~s~s~d------g~i 235 (435)
T 1p22_A 176 VLCLQY--DERVIITGSSDSTVRVWDVNTGE----MLN---TLIHHC---EAVLHLRFN--NGMMVTCSKD------RSI 235 (435)
T ss_dssp EEEEEC--CSSEEEEEETTSCEEEEESSSCC----EEE---EECCCC---SCEEEEECC--TTEEEEEETT------SCE
T ss_pred EEEEEE--CCCEEEEEcCCCeEEEEECCCCc----EEE---EEcCCC---CcEEEEEEc--CCEEEEeeCC------CcE
Confidence 355565 67777777889999999965454 121 221111 245677775 3555554332 359
Q ss_pred EEEECCCCeEEE-EeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccC
Q 039428 131 AAYDLSTWKRLF-LTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 131 ~~~d~~~~~~~~-~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
..||.++++... ...... . ....+.+++ +|+..++.+..+.|..+|... +....+.. ......
T Consensus 236 ~vwd~~~~~~~~~~~~~~~--~-~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----------~~~~v~ 300 (435)
T 1p22_A 236 AVWDMASPTDITLRRVLVG--H-RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG----------HKRGIA 300 (435)
T ss_dssp EEEECSSSSCCEEEEEECC--C-SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC----------CSSCEE
T ss_pred EEEeCCCCCCceeeeEecC--C-CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcC----------CCCcEE
Confidence 999998764321 111111 1 234455666 677777777889999999764 33332221 011244
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.+++ ++.++++-..++.|..+|...++ ....+.... .....+++ ++..+++....+.+++.+..
T Consensus 301 ~~~~--~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~----~~v~~~~~--~~~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 301 CLQY--RDRLVVSGSSDNTIRLWDIECGA-CLRVLEGHE----ELVRCIRF--DNKRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp EEEE--ETTEEEEEETTSCEEEEETTTCC-EEEEECCCS----SCEEEEEC--CSSEEEEEETTSCEEEEEHH
T ss_pred EEEe--CCCEEEEEeCCCeEEEEECCCCC-EEEEEeCCc----CcEEEEEe--cCCEEEEEeCCCcEEEEECC
Confidence 5555 45566666678899999998764 444444221 22456666 45656664444678887753
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0093 Score=61.61 Aligned_cols=168 Identities=14% Similarity=0.085 Sum_probs=105.2
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-..++|++ |++++....+++|..||..+++ .+. .+..+ .....++++++...|+++..| +.
T Consensus 60 ~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~----~~~---~~~~~----~~V~~v~~sp~g~~l~sgs~d------g~ 121 (902)
T 2oaj_A 60 AIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK----VLT---TVFVP----GKITSIDTDASLDWMLIGLQN------GS 121 (902)
T ss_dssp CEEEEEEET-TTEEEEEETTCEEEEEETTTCS----EEE---EEECS----SCEEEEECCTTCSEEEEEETT------SC
T ss_pred CEEEEEEcC-CCEEEEEECcCeEEEEECCCCc----EEE---EEcCC----CCEEEEEECCCCCEEEEEcCC------Cc
Confidence 357899999 7755555788999999965444 122 22222 256789999855555554322 35
Q ss_pred EEEEECCCCeEE-EEee-c----CCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccCCcE-EEEecCCccc-cccc
Q 039428 130 LAAYDLSTWKRL-FLTQ-L----SGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVEGQL-LSIIRSPLFT-AKEW 200 (335)
Q Consensus 130 v~~~d~~~~~~~-~~~~-~----~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~-~~~~ 200 (335)
|..||.++++.. +... . ..........+.++++|+ ++.+++.+..+.| .+|..... ...+...... .+..
T Consensus 122 V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~ 200 (902)
T 2oaj_A 122 MIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGG 200 (902)
T ss_dssp EEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCS
T ss_pred EEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCc
Confidence 999999988754 2210 0 001111356788999996 4666677778889 99987543 3333211000 0000
Q ss_pred -------cccccccCeEEEccCCeEEEEECCCCEEEEEeCCCC
Q 039428 201 -------YKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 201 -------~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
.......+.++|+|||..+++-..++.|..+|...+
T Consensus 201 ~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 201 DFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp TTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred ccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 000123789999999988888888999999999876
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.013 Score=58.84 Aligned_cols=199 Identities=14% Similarity=0.049 Sum_probs=106.0
Q ss_pred eeeeEEcCCCCEEEEE-ecCC----eEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCC-
Q 039428 51 CETAKWDDVGRRFLVS-FLDG----GVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLG- 124 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~~~----~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~- 124 (335)
-.+++|+|+|+.+..+ ...| .|+++|..+++ .+.. .+ ++. ...+++++++ ..|+.+..|...
T Consensus 165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~----~~~~--~~--~~~---~~~~~~wspD-~~l~~~~~~~~~~ 232 (741)
T 1yr2_A 165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK----PLAD--EL--KWV---KFSGLAWLGN-DALLYSRFAEPKE 232 (741)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC----EEEE--EE--EEE---ESCCCEESTT-SEEEEEECCCC--
T ss_pred EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC----CCCc--cC--CCc---eeccEEEECC-CEEEEEEecCccc
Confidence 4578999999977666 3333 59999975554 1111 11 110 1247788886 777776443321
Q ss_pred -------CccceEEEEECCCCeE--EEEeecCCCccCCCCCCceeECCCCc-EEEEeC----CCCeEEEEccCCc----E
Q 039428 125 -------NKYSALAAYDLSTWKR--LFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV----VSSKIWKVGVEGQ----L 186 (335)
Q Consensus 125 -------~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~----~~~~I~~~d~~g~----~ 186 (335)
.....|++++..+++. ...... +.. .....++.+++||+ ++++.. ....|+.+|.++. .
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~--~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 309 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFAT--PEL-PKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV 309 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECC--TTC-TTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEecc--CCC-CeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence 0024699999876641 111221 111 12345788999996 444332 3568999998654 2
Q ss_pred EEEecCCccccccccccccccCeEEEccCC-eEEEEECC---CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCC
Q 039428 187 LSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMC---SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSP 262 (335)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~---~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~ 262 (335)
..+... . ...... ++++| .||+.... +.+|+++|+++.....+.+- .... ....+++++ +
T Consensus 310 ~~l~~~--~---------~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~-~~~~--~~l~~~~~~-~ 373 (741)
T 1yr2_A 310 TALIPD--L---------KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV-PESK--DNLESVGIA-G 373 (741)
T ss_dssp EEEECS--S---------SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE-CCCS--SEEEEEEEE-B
T ss_pred EEecCC--C---------CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe-cCCC--CeEEEEEEE-C
Confidence 222111 0 011222 35777 77765432 56899999987310233332 1211 123466766 4
Q ss_pred CcEEEEec--CCCeEEEEEc
Q 039428 263 TKLVVAGN--PYPSARLVES 280 (335)
Q Consensus 263 g~l~va~~--~~~~~~v~~~ 280 (335)
+.++++.. +...+++++.
T Consensus 374 ~~lv~~~~~dg~~~l~~~~~ 393 (741)
T 1yr2_A 374 NRLFASYIHDAKSQVLAFDL 393 (741)
T ss_dssp TEEEEEEEETTEEEEEEEET
T ss_pred CEEEEEEEECCEEEEEEEeC
Confidence 56666632 2234555554
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0098 Score=59.35 Aligned_cols=201 Identities=9% Similarity=0.023 Sum_probs=106.5
Q ss_pred eeeeEEcCCCCEEEEE-ecC----CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCC-
Q 039428 51 CETAKWDDVGRRFLVS-FLD----GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLG- 124 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~~----~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~- 124 (335)
-.+++|+|+|+.+..+ ..+ ..|+++|..+++ .............++++++++..|+.+..|..+
T Consensus 123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~----------~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~ 192 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGE----------WSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPS 192 (695)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCC----------BCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTT
T ss_pred EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCC----------CcCCcccCcccccceEEecCCCEEEEEEecCCCC
Confidence 4688999999977766 333 479999975554 110001111112578898854455554333221
Q ss_pred ------CccceEEEEECCCCeE--EEEeecCCCccCCCCCCceeECCCCc-EEEEeC---CCCeEEEEccCC-cEEEEec
Q 039428 125 ------NKYSALAAYDLSTWKR--LFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV---VSSKIWKVGVEG-QLLSIIR 191 (335)
Q Consensus 125 ------~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~---~~~~I~~~d~~g-~~~~~~~ 191 (335)
.....|++++..+++. ....... .. .....++.+++||+ ++++.. .+..|+.++..+ +...+..
T Consensus 193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~--~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 269 (695)
T 2bkl_A 193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERT--GD-PTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK 269 (695)
T ss_dssp SCGGGGGGGCEEEEEETTSCGGGCEEEECCC--CC-TTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE
T ss_pred CccccCCCCCEEEEEECCCCchhceEEEecC--CC-CEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec
Confidence 1124699999987651 1112221 11 23445789999996 444322 245889887643 3333221
Q ss_pred CCccccccccccccccCeEEEccCCeEEEEEC---CCCEEEEEeCCCCce-e-EEEEeccCCcCCCCCCeEEEcCCCcEE
Q 039428 192 SPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHM---CSGNLFKIDIRKEEE-E-VKLIELRGGSSLSLGDGLALLSPTKLV 266 (335)
Q Consensus 192 ~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~---~~~~v~~~d~~~~~~-~-~~~~~~~g~~~~~~pdGia~d~~g~l~ 266 (335)
.. ........ ++|.+|+... .+.+|+++|+++++. . ..++....+ ....++++. ++.++
T Consensus 270 ~~-----------~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~---~~l~~~~~~-~~~lv 333 (695)
T 2bkl_A 270 GV-----------GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSS---ASLLSVSIV-GGHLS 333 (695)
T ss_dssp CS-----------SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSS---CEEEEEEEE-TTEEE
T ss_pred CC-----------CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCC---CeEEEEEEE-CCEEE
Confidence 10 11223333 5665666543 368999999977520 1 333331111 123567777 56777
Q ss_pred EEec--CCCeEEEEEc
Q 039428 267 VAGN--PYPSARLVES 280 (335)
Q Consensus 267 va~~--~~~~~~v~~~ 280 (335)
++.. +...+++++.
T Consensus 334 ~~~~~dg~~~l~~~~~ 349 (695)
T 2bkl_A 334 LEYLKDATSEVRVATL 349 (695)
T ss_dssp EEEEETTEEEEEEEET
T ss_pred EEEEECCEEEEEEEeC
Confidence 7633 2234555554
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.021 Score=56.90 Aligned_cols=78 Identities=10% Similarity=0.040 Sum_probs=46.3
Q ss_pred CeEEEEccCC-cEEEEecCCccccccccccccccCeEEEcc-CCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCC
Q 039428 175 SKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNGIVYHP-DGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLS 252 (335)
Q Consensus 175 ~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~-dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~ 252 (335)
+.|+.+|+.. +.+..... .....+.++.. +|.+|++ +.++.|+.+|.+.++ .+..+.... ....
T Consensus 438 g~l~A~D~~tG~~~W~~~~-----------~~~~~~~~~~t~gg~vf~g-~~dg~l~a~d~~tG~-~l~~~~~~~-~~~~ 503 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPY-----------PTHWNGGTLSTAGNLVFQG-TAAGQMHAYSADKGE-ALWQFEAQS-GIVA 503 (668)
T ss_dssp EEEEEEETTTTEEEEEEEE-----------SSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCC-EEEEEECSS-CCCS
T ss_pred ceEEEEeCCCCcEEEEccC-----------CCCCcCceeEeCCCEEEEE-CCcccchhhhhhcCh-hheEecCCC-Cccc
Confidence 6788898764 43321110 01123333333 5578887 578999999998875 555565533 2123
Q ss_pred CCCeEEEcCCCcEEEE
Q 039428 253 LGDGLALLSPTKLVVA 268 (335)
Q Consensus 253 ~pdGia~d~~g~l~va 268 (335)
.| +++..+|++||+
T Consensus 504 ~p--~~~~~~G~~yva 517 (668)
T 1kv9_A 504 AP--MTFELAGRQYVA 517 (668)
T ss_dssp CC--EEEEETTEEEEE
T ss_pred Cc--eEEEECCEEEEE
Confidence 34 555567898888
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.032 Score=50.98 Aligned_cols=156 Identities=9% Similarity=-0.009 Sum_probs=86.4
Q ss_pred eEEEeC--CCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEe-----------
Q 039428 105 GIAVDR--PRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTD----------- 171 (335)
Q Consensus 105 Gi~~d~--~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d----------- 171 (335)
.+++.+ .++.+++...+ + ..|..||+++++.+...... .........+++.|+|.+.++.
T Consensus 183 ~l~fs~~~g~~~~LaSgS~---D--~TIkIWDl~TGk~l~tL~g~--~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS 255 (356)
T 2w18_A 183 ILTFAEVQGMQEALLGTTI---M--NNIVIWNLKTGQLLKKMHID--DSYQASVCHKAYSEMGLLFIVLSHPCAKESESL 255 (356)
T ss_dssp EEEEEEEETSTTEEEEEET---T--SEEEEEETTTCCEEEEEECC--C---CCCEEEEEEETTEEEEEEC----------
T ss_pred eEEeeccCCCCceEEEecC---C--CcEEEEECCCCcEEEEEcCC--CcceeeeEEEEECCCCCEEEEeccCCCcceeec
Confidence 444443 24566674332 1 46999999999876443321 1112234456899999876542
Q ss_pred -CCCCeEEEEccCCcEE-EEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCc
Q 039428 172 -VVSSKIWKVGVEGQLL-SIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGS 249 (335)
Q Consensus 172 -~~~~~I~~~d~~g~~~-~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~ 249 (335)
+..+.|..+|+++... ..+. +..|. ...-.-+..+.++.+.++-..++.|...|+..++ ....+. + .
T Consensus 256 Gs~D~tIklWd~~tgk~l~v~~---~~~p~----Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk-~l~tL~--g-H 324 (356)
T 2w18_A 256 RSPVFQLIVINPKTTLSVGVML---YCLPP----GQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQ-CTALLP--P-V 324 (356)
T ss_dssp --CCEEEEEEETTTTEEEEEEE---ECCCT----TCCCCEEEEEEETTEEEEEETTSCEEEEETTTCS-EEEEEC--C-C
T ss_pred cCCCcEEEEEECCCCEEEEEEE---eeccC----CCcceeEccccCCCEEEEEcCCCcEEEEECCCCc-EEEEec--C-C
Confidence 3345666677764432 2110 00010 0000112223335567777778899999999875 445553 2 1
Q ss_pred CCCCCC-eEEEcCCCcEEEEecCCCeEEEEE
Q 039428 250 SLSLGD-GLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 250 ~~~~pd-Gia~d~~g~l~va~~~~~~~~v~~ 279 (335)
...+. -+++.|+|.+.++....+.+++.+
T Consensus 325 -~~~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 325 -SDQHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp ---CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred -CCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 11233 489999999888866557787765
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.023 Score=56.36 Aligned_cols=239 Identities=9% Similarity=-0.024 Sum_probs=119.5
Q ss_pred eeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEe-cCCCCccce
Q 039428 53 TAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFT-DVLGNKYSA 129 (335)
Q Consensus 53 gia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~-D~~~~~~~~ 129 (335)
+.++..+|.+|++. .....++++|+.+.+ |...+.+.. +.-++.++-+ +|+|||... .........
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~----------W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~ 315 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDS----------WIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKN 315 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTE----------EEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCC
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCc----------eeECCCCCccccccceEEec-CCeEEEEeCcccCCccccc
Confidence 46777889988888 456689999964332 433333221 2335666654 789999643 111111246
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC---------CCeEEEEccCCcEEE-EecCCcccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV---------SSKIWKVGVEGQLLS-IIRSPLFTAKE 199 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~---------~~~I~~~d~~g~~~~-~~~~~~~~~~~ 199 (335)
+.+||+++++-...............- ..++..++.+|+.... ...+.++|+...... ..+...... .
T Consensus 316 ~e~yd~~t~~W~~~~~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~-~ 393 (656)
T 1k3i_A 316 GEVYSPSSKTWTSLPNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNR-G 393 (656)
T ss_dssp EEEEETTTTEEEEETTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETT-E
T ss_pred ceEeCCCCCcceeCCCccccccccccc-cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccc-c
Confidence 999999987654321110000000111 1223345667776533 345677777643211 111000000 0
Q ss_pred ccccccccCeEEEc-cCCeEEEEECCC--------C---EEEEEeCCCCceeEEEEeccCCcCCCCC---CeEEEcCCCc
Q 039428 200 WYKNVFGLNGIVYH-PDGFLIVIHMCS--------G---NLFKIDIRKEEEEVKLIELRGGSSLSLG---DGLALLSPTK 264 (335)
Q Consensus 200 ~~~~~~~p~Gia~~-~dg~Lyvad~~~--------~---~v~~~d~~~~~~~~~~~~~~g~~~~~~p---dGia~d~~g~ 264 (335)
..+.......+.++ .++.||+.-... . .|.++|+... ....+.. + . +..+ ..+++-++|+
T Consensus 394 ~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~~~-~-~-mp~~R~~~~~~~l~~g~ 468 (656)
T 1k3i_A 394 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS--PNTVFAS-N-G-LYFARTFHTSVVLPDGS 468 (656)
T ss_dssp ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC--CEEEECT-T-C-CSSCCBSCEEEECTTSC
T ss_pred cCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC--CeeEEcc-C-C-CCCCcccCCeEECCCCC
Confidence 00000111223333 367999875421 2 6778888776 4444421 1 1 2222 3456667899
Q ss_pred EEEEecC-----------CCeEEEEEcCCC-cEEEEEeeeecCCCCCcceEEEEe--CCeEEEE
Q 039428 265 LVVAGNP-----------YPSARLVESSDG-WETASVVAKFNGPTHRVATAATVK--DGRVYLS 314 (335)
Q Consensus 265 l~va~~~-----------~~~~~v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~ 314 (335)
+||.+.. .+.+.+++...+ |.. ......|... +++++- +|+|||.
T Consensus 469 i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~---~~~~~~~R~~--hs~a~ll~dg~v~v~ 527 (656)
T 1k3i_A 469 TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK---QNPNSIVRVY--HSISLLLPDGRVFNG 527 (656)
T ss_dssp EEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE---CCCCSSCCCT--TEEEEECTTSCEEEE
T ss_pred EEEECCcccCcCcCCCCcccceEEEcCCCCceee---cCCCCCcccc--ccHhhcCCCcEEEec
Confidence 9999531 134667776544 543 2323233332 345543 8999984
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.036 Score=50.65 Aligned_cols=160 Identities=10% Similarity=0.009 Sum_probs=90.0
Q ss_pred eeEEcC---CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC-------
Q 039428 53 TAKWDD---VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV------- 122 (335)
Q Consensus 53 gia~d~---~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~------- 122 (335)
.+++.+ ++.+++.+..+++|..||..+++. +. .+......-.....++++| +|.+.++....
T Consensus 183 ~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~----l~---tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~la 254 (356)
T 2w18_A 183 ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL----LK---KMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESES 254 (356)
T ss_dssp EEEEEEEETSTTEEEEEETTSEEEEEETTTCCE----EE---EEECCC---CCCEEEEEEE-TTEEEEEEC---------
T ss_pred eEEeeccCCCCceEEEecCCCcEEEEECCCCcE----EE---EEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceee
Confidence 345555 556666668899999999766651 22 2222111002345668887 67666532210
Q ss_pred CCCccceEEEEECCCCeEEEEeecC-CCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccc
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQLS-GKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEW 200 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~ 200 (335)
.+.....|..+|+.+++........ +.+. .... +..+.+|.+.++.+..+.|..+|... +....+..
T Consensus 255 SGs~D~tIklWd~~tgk~l~v~~~~~p~Gh-~~~~--lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~g-------- 323 (356)
T 2w18_A 255 LRSPVFQLIVINPKTTLSVGVMLYCLPPGQ-AGRF--LEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPP-------- 323 (356)
T ss_dssp ---CCEEEEEEETTTTEEEEEEEECCCTTC-CCCE--EEEEEETTEEEEEETTSCEEEEETTTCSEEEEECC--------
T ss_pred ccCCCcEEEEEECCCCEEEEEEEeeccCCC-ccee--EccccCCCEEEEEcCCCcEEEEECCCCcEEEEecC--------
Confidence 0111146888999998765322211 1111 1111 22233366778877888999999874 44443321
Q ss_pred cccccccC-eEEEccCCeEEEEECCCCEEEEEeC
Q 039428 201 YKNVFGLN-GIVYHPDGFLIVIHMCSGNLFKIDI 233 (335)
Q Consensus 201 ~~~~~~p~-Gia~~~dg~Lyvad~~~~~v~~~d~ 233 (335)
....+. .++|+|||.++++-+.+++|...|.
T Consensus 324 --H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 324 --VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp --C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred --CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 011233 5899999977778788888877664
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0016 Score=63.78 Aligned_cols=109 Identities=15% Similarity=0.213 Sum_probs=70.9
Q ss_pred ccccCeEEEcc-CCeEEEEECC---------------------CCEEEEEeCCCCc----e-eEEEEeccC---------
Q 039428 204 VFGLNGIVYHP-DGFLIVIHMC---------------------SGNLFKIDIRKEE----E-EVKLIELRG--------- 247 (335)
Q Consensus 204 ~~~p~Gia~~~-dg~Lyvad~~---------------------~~~v~~~d~~~~~----~-~~~~~~~~g--------- 247 (335)
+..|.+++++| +|.+|++-+. .|+|+|++++... . ....+...+
T Consensus 383 f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~ 462 (592)
T 3zwu_A 383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP 462 (592)
T ss_dssp EECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred EeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccccc
Confidence 45689999998 6799998764 2689999876531 0 122222111
Q ss_pred ---------CcCCCCCCeEEEcCCCcEEEEecCC------------CeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEE
Q 039428 248 ---------GSSLSLGDGLALLSPTKLVVAGNPY------------PSARLVESSDGWETASVVAKFNGPTHRVATAATV 306 (335)
Q Consensus 248 ---------~~~~~~pdGia~d~~g~l~va~~~~------------~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~ 306 (335)
...+..||+|++|+.|+|||+..++ |.+++.....+ ++..-+..|...-.|+++|
T Consensus 463 ~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g----~~~rf~~~P~gaE~TG~~f 538 (592)
T 3zwu_A 463 KGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG----EIRRFMVGPIGCEVTGISF 538 (592)
T ss_dssp GGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC----CEEEEEECCTTCEEEEEEE
T ss_pred cccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCC----eEEEEEeCCCCccCcCeeE
Confidence 1126789999999999999994321 34555544333 2333344676667789999
Q ss_pred e--CCeEEEEec
Q 039428 307 K--DGRVYLSHL 316 (335)
Q Consensus 307 ~--~g~lyV~~~ 316 (335)
. +.+|||+-+
T Consensus 539 spDg~tlfvniQ 550 (592)
T 3zwu_A 539 SPDQKTLFVGIQ 550 (592)
T ss_dssp CTTSSEEEEEEE
T ss_pred CCCCCEEEEEEE
Confidence 4 678999755
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.073 Score=52.33 Aligned_cols=120 Identities=11% Similarity=-0.001 Sum_probs=68.6
Q ss_pred eeEEcCCCCEEEEEec-CCeEEEEEC-CCCCCCcceeeeeEEeecCCcCC---------CCcceEEEeCCCCe----EEE
Q 039428 53 TAKWDDVGRRFLVSFL-DGGVGQVLV-PDEYSPGTVLEEVKLVKEDDVVG---------NATMGIAVDRPRNR----LLV 117 (335)
Q Consensus 53 gia~d~~g~~~~~~~~-~~~I~~~d~-~~g~~~~~v~~~~~~~~~~~~~~---------~~p~Gi~~d~~~g~----l~v 117 (335)
.+++. ++.+|+... ++.|+.+|. .+|+. + |........ ....|+++.+.+++ ||+
T Consensus 57 tP~v~--~g~vyv~~~~~~~v~AlD~~~tG~~----l----W~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v 126 (599)
T 1w6s_A 57 APLVV--DGKMYIHTSFPNNTFALGLDDPGTI----L----WQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILK 126 (599)
T ss_dssp CCEEE--TTEEEEECSTTTCEEEEETTCTTSE----E----EEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEE
T ss_pred ccEEE--CCEEEEEeCCCCEEEEEeCCCCCcE----E----EEECCCCCccccccccccccccceEEEecCCcceeEEEE
Confidence 34444 345556644 789999997 67761 1 322221100 11357788432566 999
Q ss_pred EEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC-----CCCeEEEEccC-CcEEEE
Q 039428 118 AFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-----VSSKIWKVGVE-GQLLSI 189 (335)
Q Consensus 118 ~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-----~~~~I~~~d~~-g~~~~~ 189 (335)
...| ..|+.+|.++|++++..................+. +|.+||... ..+.|+.+|.+ |+.+..
T Consensus 127 ~t~d------g~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~ 197 (599)
T 1w6s_A 127 TQLD------GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWR 197 (599)
T ss_dssp ECTT------SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred EcCC------CEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcEEEE
Confidence 5332 35999999999998776653211100111112222 578888654 36899999986 665543
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0028 Score=62.12 Aligned_cols=113 Identities=15% Similarity=0.211 Sum_probs=73.0
Q ss_pred CCcceEEEeCCCCeEEEEEecCCC----------------CccceEEEEECCCCe-----EE---EEeecCC--------
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVLG----------------NKYSALAAYDLSTWK-----RL---FLTQLSG-------- 148 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~~----------------~~~~~v~~~d~~~~~-----~~---~~~~~~~-------- 148 (335)
.+|.++.+++.++.+|++..+... ++..+|++|+++.+. .. +......
T Consensus 384 ~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~~ 463 (592)
T 3zwu_A 384 DRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPK 463 (592)
T ss_dssp ECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGG
T ss_pred eccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccccc
Confidence 468999999888999998653221 123579999865331 11 1211110
Q ss_pred -------CccCCCCCCceeECCCCcEEEEe-C-----------CCCeEEEEccC-CcEEEEecCCccccccccccccccC
Q 039428 149 -------KSEEKSTADDIAVDAEGNAYVTD-V-----------VSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 149 -------~~~~~~~p~~~~vd~~G~lyV~d-~-----------~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
....+..|..|+||++|+|||+. . .++.++..+++ |+..+++..+ ...-..
T Consensus 464 ~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P---------~gaE~T 534 (592)
T 3zwu_A 464 GGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP---------IGCEVT 534 (592)
T ss_dssp GCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC---------TTCEEE
T ss_pred ccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC---------CCccCc
Confidence 01126789999999999999973 2 24678888887 4444433221 123478
Q ss_pred eEEEccCC-eEEEEE
Q 039428 209 GIVYHPDG-FLIVIH 222 (335)
Q Consensus 209 Gia~~~dg-~Lyvad 222 (335)
|++|+||+ +|||+-
T Consensus 535 G~~fspDg~tlfvni 549 (592)
T 3zwu_A 535 GISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEECTTSSEEEEEE
T ss_pred CeeECCCCCEEEEEE
Confidence 99999999 888763
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0054 Score=61.12 Aligned_cols=155 Identities=12% Similarity=0.109 Sum_probs=84.1
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCC----Cc
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLG----NK 126 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~----~~ 126 (335)
+.+++|.++|+ ++....++.|+.+|..+++ .. .+.............++++|++..|..+. +..+ ..
T Consensus 18 ~~~~~~s~dg~-~~~~~~d~~i~~~~~~~g~-----~~--~~~~~~~~~~~~~~~~~~SpDg~~la~~~-~~~~~~~~s~ 88 (719)
T 1z68_A 18 TFFPNWISGQE-YLHQSADNNIVLYNIETGQ-----SY--TILSNRTMKSVNASNYGLSPDRQFVYLES-DYSKLWRYSY 88 (719)
T ss_dssp CCCCEESSSSE-EEEECTTSCEEEEESSSCC-----EE--EEECHHHHHTTTCSEEEECTTSSEEEEEE-EEEECSSSCE
T ss_pred CCccEECCCCe-EEEEcCCCCEEEEEcCCCc-----EE--EEEccccccccceeeEEECCCCCeEEEEe-cCceeEEeec
Confidence 44889999995 4444457899999965444 11 23322111001256899998444454432 2110 00
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEec-CCccc----c-cc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIR-SPLFT----A-KE 199 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~-~~~~~----~-~~ 199 (335)
...|+++|.++++......+ ......+++.|||+ +.++ ..+.|+.++.++.....+. .+... . +.
T Consensus 89 ~~~i~~~d~~~g~~~~~~~l------~~~~~~~~~SPDG~~la~~--~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~ 160 (719)
T 1z68_A 89 TATYYIYDLSNGEFVRGNEL------PRPIQYLCWSPVGSKLAYV--YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPD 160 (719)
T ss_dssp EEEEEEEETTTTEECCSSCC------CSSBCCEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCCCCBTTTEEESSCC
T ss_pred ceEEEEEECCCCccccceec------CcccccceECCCCCEEEEE--ECCeEEEEeCCCCCcEEEecCCCcCCeEccccc
Confidence 14699999998876210112 13456799999996 4443 2468999998754433221 10000 0 00
Q ss_pred c---cccccccCeEEEccCC-eEEEEE
Q 039428 200 W---YKNVFGLNGIVYHPDG-FLIVIH 222 (335)
Q Consensus 200 ~---~~~~~~p~Gia~~~dg-~Lyvad 222 (335)
. ........+++++||| .|+++.
T Consensus 161 ~v~~ee~~~~~~~~~wSPDG~~la~~~ 187 (719)
T 1z68_A 161 WVYEEEMLATKYALWWSPNGKFLAYAE 187 (719)
T ss_dssp HHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred ceeeeecccCcccEEECCCCCEEEEEE
Confidence 0 0001123689999999 666544
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.032 Score=55.61 Aligned_cols=202 Identities=12% Similarity=0.099 Sum_probs=104.9
Q ss_pred eeeEEcCCCCEEEEEecC-------------CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEE
Q 039428 52 ETAKWDDVGRRFLVSFLD-------------GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVA 118 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~-------------~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~ 118 (335)
.+++|+++|+.++.+..+ ..|++++..++.. +...+...+... ....++.+++++..|++.
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~-----~~~lv~~~~~~~-~~~~~~~~SpDG~~l~~~ 244 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS-----KDTVVHERTGDP-TTFLQSDLSRDGKYLFVY 244 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG-----GCEEEECCCCCT-TCEEEEEECTTSCCEEEE
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch-----hceEEEecCCCC-EEEEEEEECCCCCEEEEE
Confidence 579999999877766332 2499998643331 111122222110 234688899855556554
Q ss_pred EecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC---CCCeEEEEccCCcE----EEEec
Q 039428 119 FTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV---VSSKIWKVGVEGQL----LSIIR 191 (335)
Q Consensus 119 ~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~---~~~~I~~~d~~g~~----~~~~~ 191 (335)
..+... ...|+.+|..+++....... ......... ++|.+|+... .+.+|++++.++.. ..++.
T Consensus 245 ~~~~~~--~~~l~~~~~~~~~~~~l~~~------~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~ 315 (695)
T 2bkl_A 245 ILRGWS--ENDVYWKRPGEKDFRLLVKG------VGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVP 315 (695)
T ss_dssp EEETTT--EEEEEEECTTCSSCEEEEEC------SSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC
T ss_pred EeCCCC--ceEEEEEcCCCCceEEeecC------CCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEec
Confidence 333211 14688888766654432221 111112222 4555777543 46899999986432 22221
Q ss_pred CCccccccccccccccCeEEEccCCeEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEE
Q 039428 192 SPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVA 268 (335)
Q Consensus 192 ~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va 268 (335)
. . ......+++++ ++.|+++...+ .+|+.+++++. ..+.+...+ .....++++.+++ .++++
T Consensus 316 ~----~-----~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~--~~~~l~~~~---~~~v~~~~~s~d~~~l~~~ 380 (695)
T 2bkl_A 316 E----D-----SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK--PVRTVQLPG---VGAASNLMGLEDLDDAYYV 380 (695)
T ss_dssp C----C-----SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC--EEEECCCSS---SSEECCCBSCTTCSEEEEE
T ss_pred C----C-----CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC--eeEEecCCC---CeEEEEeecCCCCCEEEEE
Confidence 1 0 01124677887 67777765544 47888888665 444444322 1123455566666 45544
Q ss_pred -ecCC--CeEEEEEcCCC
Q 039428 269 -GNPY--PSARLVESSDG 283 (335)
Q Consensus 269 -~~~~--~~~~v~~~~~~ 283 (335)
.... ..+.+++...+
T Consensus 381 ~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 381 FTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEETTEEEEEEEEETTTC
T ss_pred EcCCCCCCEEEEEECCCC
Confidence 2211 23555555443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.03 Score=54.51 Aligned_cols=157 Identities=8% Similarity=0.134 Sum_probs=94.3
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCc-ceeeeeEEee--cCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPG-TVLEEVKLVK--EDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~-~v~~~~~~~~--~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
-.+++|+|+|+.++++..+++|..||..++.... +.+. ...+. ..+. ..+...+++.| +| +.++..|
T Consensus 132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~-l~ti~~~~~gh-~~~V~sVawSP-dg-Laass~D------ 201 (588)
T 2j04_A 132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYF-ESSIRLSDAGS-KDWVTHIVWYE-DV-LVAALSN------ 201 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEE-EEEEECSCTTC-CCCEEEEEEET-TE-EEEEETT------
T ss_pred EEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccccee-eeeeecccccc-cccEEEEEEcC-Cc-EEEEeCC------
Confidence 5789999999999999889999999965442100 0000 01111 1111 14678999997 66 5443332
Q ss_pred ceEEEEECCCCeEE-EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 128 SALAAYDLSTWKRL-FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 128 ~~v~~~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
..|..||.++++.. ....+.. +. .....++++. |+..++.. .+.|..+|.+++....+..+ ....
T Consensus 202 ~tVrlWd~~~~~~~~~~~tL~~-~h-~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g---------h~~~ 267 (588)
T 2j04_A 202 NSVFSMTVSASSHQPVSRMIQN-AS-RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG---------SLEN 267 (588)
T ss_dssp CCEEEECCCSSSSCCCEEEEEC-CC-SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS---------CCSC
T ss_pred CeEEEEECCCCccccceeeecc-cc-cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC---------CCce
Confidence 35999999876621 0001100 11 2467889997 45555444 48999999887766432211 1123
Q ss_pred cCeEEE--ccCCeEEEEECCCCE-EEEE
Q 039428 207 LNGIVY--HPDGFLIVIHMCSGN-LFKI 231 (335)
Q Consensus 207 p~Gia~--~~dg~Lyvad~~~~~-v~~~ 231 (335)
..++++ +||+..+++...+|+ |+.+
T Consensus 268 V~~va~~~s~d~~~La~a~edG~klw~~ 295 (588)
T 2j04_A 268 FHIIPLNHEKESTILLMSNKTSYKVLLE 295 (588)
T ss_dssp CCEEEETTCSSCEEEEECSSCEEEEEES
T ss_pred EEEEEeeeCCCCCEEEEEcCCCCEEEee
Confidence 778999 999955555555555 6664
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.11 Score=45.85 Aligned_cols=219 Identities=11% Similarity=0.017 Sum_probs=117.8
Q ss_pred CCEEEEEe--cCCeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECC
Q 039428 60 GRRFLVSF--LDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLS 136 (335)
Q Consensus 60 g~~~~~~~--~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~ 136 (335)
+.+|++.. ..+.++++|+.+.+ |...+.+.. ..-+.+++. ++.||+..+.. ....+.+.+||+.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~----------W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~-~~~~~~~~~~d~~ 78 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYS----------WTDIRCPFEKRRDAACVFW--DNVVYILGGSQ-LFPIKRMDCYNVV 78 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTE----------EEECCCCSCCCBSCEEEEE--TTEEEEECCBS-SSBCCEEEEEETT
T ss_pred ceEEEEeCCCCCceEEEecCCCCC----------EecCCCCCcccceeEEEEE--CCEEEEEeCCC-CCCcceEEEEeCC
Confidence 34555552 24789999965433 322222211 233455554 68899964322 2222579999999
Q ss_pred CCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC------CCeEEEEccCCcEEEEecCCccccccccccccccCeE
Q 039428 137 TWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV------SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~------~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
+++-....+.+.+ .... .+++ -++.+||.... ...++++|+....-..+.. +. ....-...
T Consensus 79 ~~~W~~~~~~p~~---r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~--~p------~~r~~~~~ 145 (306)
T 3ii7_A 79 KDSWYSKLGPPTP---RDSL-AACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS--ML------TQRCSHGM 145 (306)
T ss_dssp TTEEEEEECCSSC---CBSC-EEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC--CS------SCCBSCEE
T ss_pred CCeEEECCCCCcc---ccce-eEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC--Cc------CCcceeEE
Confidence 8865544333211 1222 2222 36789997432 3679999998665443321 11 11123344
Q ss_pred EEccCCeEEEEECC---------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC-----CCeEE
Q 039428 211 VYHPDGFLIVIHMC---------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP-----YPSAR 276 (335)
Q Consensus 211 a~~~dg~Lyvad~~---------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~-----~~~~~ 276 (335)
+.. ++.||+.-.. .+.++++|+... ..+.+...... .. -..+++. ++++|+.+.. .+.+.
T Consensus 146 ~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~-r~-~~~~~~~-~~~i~v~GG~~~~~~~~~~~ 219 (306)
T 3ii7_A 146 VEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEA-RK-NHGLVFV-KDKIFAVGGQNGLGGLDNVE 219 (306)
T ss_dssp EEE-TTEEEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSC-CB-SCEEEEE-TTEEEEECCEETTEEBCCEE
T ss_pred EEE-CCEEEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccch-hh-cceEEEE-CCEEEEEeCCCCCCCCceEE
Confidence 443 7788886421 467999999987 55555321101 11 2234443 6789998431 24577
Q ss_pred EEEcCCC-cEEEEEeeeecCCCCCcceEEEEeCCeEEEEe
Q 039428 277 LVESSDG-WETASVVAKFNGPTHRVATAATVKDGRVYLSH 315 (335)
Q Consensus 277 v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~~ 315 (335)
+++...+ |... ..+ |..+.-.++++-+++|||.-
T Consensus 220 ~yd~~~~~W~~~---~~~--p~~r~~~~~~~~~~~i~v~G 254 (306)
T 3ii7_A 220 YYDIKLNEWKMV---SPM--PWKGVTVKCAAVGSIVYVLA 254 (306)
T ss_dssp EEETTTTEEEEC---CCC--SCCBSCCEEEEETTEEEEEE
T ss_pred EeeCCCCcEEEC---CCC--CCCccceeEEEECCEEEEEe
Confidence 7776655 6543 222 22222234555689999843
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.036 Score=49.41 Aligned_cols=146 Identities=7% Similarity=0.094 Sum_probs=86.0
Q ss_pred ceeeeEEcCCCCEEEEE-e--------cCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEe
Q 039428 50 LCETAKWDDVGRRFLVS-F--------LDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFT 120 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~--------~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~ 120 (335)
...++++ +|+.++.. . ..+.|+.+|..+++ .. .+ .....++++|++..|+.+..
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~-----~~---~l-------~~~~~~~~SpDg~~la~~~~ 78 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA-----RR---FI-------ENATMPRISPDGKKIAFMRA 78 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC-----EE---EE-------ESCEEEEECTTSSEEEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc-----eE---Ec-------ccCCCeEECCCCCEEEEEEe
Confidence 3567777 66654443 1 13579999864443 11 22 13457889985445555433
Q ss_pred cCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCC--------------------------
Q 039428 121 DVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVV-------------------------- 173 (335)
Q Consensus 121 D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~-------------------------- 173 (335)
+.... ...|+++|.++++....... .. ...+++.|||+ ++++...
T Consensus 79 ~~~~~-~~~l~~~~~~~g~~~~l~~~------~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (347)
T 2gop_A 79 NEEKK-VSEIWVADLETLSSKKILEA------KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGE 150 (347)
T ss_dssp ETTTT-EEEEEEEETTTTEEEEEEEE------SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------C
T ss_pred ccCCC-cceEEEEECCCCceEEEEcC------CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCc
Confidence 22111 14699999998876543332 12 56789999986 5555321
Q ss_pred CCeEEEEccCCcEE-EEecCCccccccccccccccCeEEEccCCeEEEEECC--------CCEEEEEe
Q 039428 174 SSKIWKVGVEGQLL-SIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC--------SGNLFKID 232 (335)
Q Consensus 174 ~~~I~~~d~~g~~~-~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~--------~~~v~~~d 232 (335)
...|++++.++... +.+.. . ....++++|||.+|++... ..+|+.++
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~-----------~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d 206 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK-----------P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE 206 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE-----------E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE
T ss_pred cceEEEEECCCCeEEeeecC-----------C-CcccccCCCCeEEEEEecccccccccccccEEEeC
Confidence 35799999876554 32211 0 3678899999933444332 34799998
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.011 Score=55.76 Aligned_cols=201 Identities=10% Similarity=0.050 Sum_probs=108.1
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeee-eEEeec-CC--c-CCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEE-VKLVKE-DD--V-VGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~-~~~~~~-~~--~-~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
-..+++++++.++++...++ |..++............. ...... +. . .......+++++++..|+|+......+
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 35789999988888775444 666542100000000000 000000 00 0 012468999998444454421001112
Q ss_pred ccceEEEEECCCC--------eEEEE-eecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccCCcEEEEecCCcc
Q 039428 126 KYSALAAYDLSTW--------KRLFL-TQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVEGQLLSIIRSPLF 195 (335)
Q Consensus 126 ~~~~v~~~d~~~~--------~~~~~-~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~ 195 (335)
+.|..||.+++ +.... ..+.+ . ....+++++.|+ ++++++.+..+.|..+|......... .
T Consensus 118 --~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--h-~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~----~ 188 (434)
T 2oit_A 118 --SIIAFFDVRTFSNEAKQQKRPFAYHKLLKD--A-GGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA----T 188 (434)
T ss_dssp --EEEEEEEHHHHHCTTCSSCCCSEEEECCCS--G-GGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE----E
T ss_pred --ceEEEEEccccccCCcCCcceeeeeeccCC--C-CCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee----c
Confidence 46899997543 11111 11111 1 345788999998 78888888899999999875432210 0
Q ss_pred ccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcC---CCCCCeEEEcCCCcEEEE
Q 039428 196 TAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSS---LSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 196 ~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~---~~~pdGia~d~~g~l~va 268 (335)
.. .......++++|+|..+++-..++.|..+|.++. ....+....... ......+++++++.++++
T Consensus 189 ~~-----~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~ 257 (434)
T 2oit_A 189 LP-----STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQ--EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIV 257 (434)
T ss_dssp EC-----GGGCEEEEEECTTSSCEEEEETTSCEEEECTTCC--EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEE
T ss_pred cC-----CCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCc--ccccccCCcccCCCCceeEEEEEEecCceEEEE
Confidence 00 1224789999999955555557889999999843 444443221000 012356777777665544
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0095 Score=57.65 Aligned_cols=157 Identities=10% Similarity=0.059 Sum_probs=98.5
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEE--EeCCCC-eEEEEEecCCCC
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIA--VDRPRN-RLLVAFTDVLGN 125 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~--~d~~~g-~l~v~~~D~~~~ 125 (335)
....+++|++++ .++++..+++|..||..++..+ .. .+.... .....|+ +.+ ++ .++++.+..
T Consensus 267 ~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~---~~---~~~~H~---~~V~sv~~~~s~-~g~~~laS~S~D--- 332 (524)
T 2j04_B 267 SLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVP---SF---YDQVHD---SYILSVSTAYSD-FEDTVVSTVAVD--- 332 (524)
T ss_dssp TCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSC---SE---EEECSS---SCEEEEEEECCT-TSCCEEEEEETT---
T ss_pred CCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCc---eE---Eeeccc---ccEEEEEEEcCC-CCCeEEEEeccC---
Confidence 345789998764 6666688999999996544321 11 122221 2456773 444 55 666643321
Q ss_pred ccceEEEEECCCCeEE--EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccc
Q 039428 126 KYSALAAYDLSTWKRL--FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~ 202 (335)
..|..||.++++.. ...... ....+.+++.|+|..+++....+.|..+|... .....+..
T Consensus 333 --~tvklWD~~~~~~~~~~~~~~~-----~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g---------- 395 (524)
T 2j04_B 333 --GYFYIFNPKDIATTKTTVSRFR-----GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS---------- 395 (524)
T ss_dssp --SEEEEECGGGHHHHCEEEEECS-----CCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE----------
T ss_pred --CeEEEEECCCCCcccccccccc-----cCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec----------
Confidence 36999998765432 111110 12356799999998888888888899998753 22221110
Q ss_pred cccccCeEEEccCCeEEEEECCCCEEEEEeCCCC
Q 039428 203 NVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 203 ~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
.....+.++++|+|.++++-+.++.|...++...
T Consensus 396 H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 396 RETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 1123789999999977778788899988887653
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.25 Score=45.26 Aligned_cols=157 Identities=14% Similarity=0.128 Sum_probs=87.4
Q ss_pred EEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC--CCcceEEEeC-------CCCeEEEEEecCCCCccceEE
Q 039428 62 RFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG--NATMGIAVDR-------PRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 62 ~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~--~~p~Gi~~d~-------~~g~l~v~~~D~~~~~~~~v~ 131 (335)
.++++ ..+++|..||...+.. ... ..+ ..+.+ ...+.+++.| .++++++...+. ..|.
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~----~~~-~~~--~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D-----~tv~ 169 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETI----ITQ-HVL--GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD-----CTLI 169 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEE----EEE-EEE--CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT-----SEEE
T ss_pred CEEEEEeCCCcEEEEECCCCcc----cee-eee--cccCCCCCceEEEEEccccccccCCCCCEEEEEECC-----CeEE
Confidence 34444 7788888888543431 111 111 11122 3568888864 246677754332 4699
Q ss_pred EEECCCCeEE-EEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCcEEE-EecC-C-----cccccc---
Q 039428 132 AYDLSTWKRL-FLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQLLS-IIRS-P-----LFTAKE--- 199 (335)
Q Consensus 132 ~~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~-~~~~-~-----~~~~~~--- 199 (335)
.||.+++... ..... ......+++.|++ ++.++.+..+.|..+|....... .... . +.....
T Consensus 170 ~Wd~~~~~~~~~~~~~------~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 170 IWRLTDEGPILAGYPL------SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp EEEEETTEEEEEEEEC------SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred EEECCCCceeeeecCC------CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 9998766544 22222 2345679999987 57777788899999997643221 1100 0 000000
Q ss_pred ------ccccccccCeEEEc-cCCeEEEEECCCCEEEEEeCCCC
Q 039428 200 ------WYKNVFGLNGIVYH-PDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 200 ------~~~~~~~p~Gia~~-~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
..........+++. +||..+++-..++++...|+...
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence 01112235677776 68877778888899988888764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.32 Score=48.03 Aligned_cols=123 Identities=11% Similarity=-0.005 Sum_probs=71.8
Q ss_pred ceeeeEEcC-CCCEEEEEecC-----------CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEE
Q 039428 50 LCETAKWDD-VGRRFLVSFLD-----------GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLV 117 (335)
Q Consensus 50 ~pegia~d~-~g~~~~~~~~~-----------~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v 117 (335)
.+...++.+ +|++|+++... ..++++|+.++++ .. +...+........++++.. +++||+
T Consensus 187 ~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w-----~~--~~~~~~~~~~~~~~~~~~~-~g~lyv 258 (656)
T 1k3i_A 187 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV-----SD--RTVTVTKHDMFCPGISMDG-NGQIVV 258 (656)
T ss_dssp CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB-----CC--CEEEECSCCCSSCEEEECT-TSCEEE
T ss_pred CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE-----Ee--CcccCCCCCCccccccCCC-CCCEEE
Confidence 456778887 78888886321 1689998654442 11 1111111112345677764 799999
Q ss_pred EEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC-C-----CCeEEEEccCCcEEE
Q 039428 118 AFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-V-----SSKIWKVGVEGQLLS 188 (335)
Q Consensus 118 ~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-~-----~~~I~~~d~~g~~~~ 188 (335)
..+.. . ..+.+||+.+++-....+.+. ...-..+++-++|++||... . ...+.++|+....-.
T Consensus 259 ~GG~~-~---~~v~~yd~~t~~W~~~~~~~~----~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 259 TGGND-A---KKTSLYDSSSDSWIPGPDMQV----ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp ECSSS-T---TCEEEEEGGGTEEEECCCCSS----CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred eCCCC-C---CceEEecCcCCceeECCCCCc----cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 63211 1 359999999876543222211 11223456667899999865 2 257899999865543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.22 Score=44.10 Aligned_cols=220 Identities=15% Similarity=0.058 Sum_probs=116.2
Q ss_pred EcCCCCEEEEEec-----C------CeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecC-
Q 039428 56 WDDVGRRFLVSFL-----D------GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDV- 122 (335)
Q Consensus 56 ~d~~g~~~~~~~~-----~------~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~- 122 (335)
...++.+|++... . ..++++|+.+.+ |...+.+.. ..-+++++. ++.||+..+-.
T Consensus 42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~----------W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~ 109 (315)
T 4asc_A 42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE----------WLGMPPLPSPRCLFGLGEA--LNSIYVVGGREI 109 (315)
T ss_dssp ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE----------EEECCCBSSCEESCEEEEE--TTEEEEECCEES
T ss_pred EEECCEEEEEcCcccCCCCCccccccceEEecCCCCe----------EEECCCCCcchhceeEEEE--CCEEEEEeCCcC
Confidence 3456778877732 1 238899964333 322222221 223556555 68999974311
Q ss_pred --CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC------CCeEEEEccCCcEEEEecCCc
Q 039428 123 --LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV------SSKIWKVGVEGQLLSIIRSPL 194 (335)
Q Consensus 123 --~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~------~~~I~~~d~~g~~~~~~~~~~ 194 (335)
.....+.+.+||+.+++-....+.+. .+....++--++++||.... ...++++|+....-..+..
T Consensus 110 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-- 182 (315)
T 4asc_A 110 KDGERCLDSVMCYDRLSFKWGESDPLPY-----VVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP-- 182 (315)
T ss_dssp STTCCBCCCEEEEETTTTEEEECCCCSS-----CCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC--
T ss_pred CCCCcccceEEEECCCCCcEeECCCCCC-----cccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC--
Confidence 11122569999999886543322211 12222223346789997543 3679999998654432211
Q ss_pred cccccccccccccCeEEEccCCeEEEEECC-----CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEe
Q 039428 195 FTAKEWYKNVFGLNGIVYHPDGFLIVIHMC-----SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAG 269 (335)
Q Consensus 195 ~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~-----~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~ 269 (335)
.. ....-.+.+.. ++.||+.-.. .+.++++|+... ....+...... .. -..++.. ++++|+.+
T Consensus 183 ~p------~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~-r~-~~~~~~~-~~~l~v~G 250 (315)
T 4asc_A 183 MQ------TARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDN--KWAPFEAFPQE-RS-SLSLVSL-VGTLYAIG 250 (315)
T ss_dssp CS------SCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTT--EEEEECCCSSC-CB-SCEEEEE-TTEEEEEE
T ss_pred CC------CchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCC--eEEECCCCCCc-cc-ceeEEEE-CCEEEEEC
Confidence 11 11122344444 6788876432 237999999887 55555321101 01 1234433 57889884
Q ss_pred cC--------------CCeEEEEEcCCC-cEEEEEeeeecCCCCCcceEEEEeCCeEEE
Q 039428 270 NP--------------YPSARLVESSDG-WETASVVAKFNGPTHRVATAATVKDGRVYL 313 (335)
Q Consensus 270 ~~--------------~~~~~v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV 313 (335)
.. .+.+.+++...+ |+.. ...|.. -.++++-+++|||
T Consensus 251 G~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-----~~~~r~--~~~~~~~~~~l~v 302 (315)
T 4asc_A 251 GFATLETESGELVPTELNDIWRYNEEEKKWEGV-----LREIAY--AAGATFLPVRLNV 302 (315)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE-----ESCSSC--CSSCEEEEEEECG
T ss_pred CccccCcCCccccccccCcEEEecCCCChhhhh-----ccCCcC--ccceEEeCCEEEE
Confidence 31 123556666555 7643 122322 2355666888887
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.45 Score=47.52 Aligned_cols=209 Identities=14% Similarity=0.114 Sum_probs=112.6
Q ss_pred CCCCEEEEEec----CCeEEEEECCCCCCCcceeeeeEEe-ecC--CcC-CCCcceEEEeCCCCeEEEEEecCCCC-ccc
Q 039428 58 DVGRRFLVSFL----DGGVGQVLVPDEYSPGTVLEEVKLV-KED--DVV-GNATMGIAVDRPRNRLLVAFTDVLGN-KYS 128 (335)
Q Consensus 58 ~~g~~~~~~~~----~~~I~~~d~~~g~~~~~v~~~~~~~-~~~--~~~-~~~p~Gi~~d~~~g~l~v~~~D~~~~-~~~ 128 (335)
-++.+|+++.. .+.++++|+.+..+ .. .. ..| .+. ....+.+++...++.|||..+-.... ..+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W-----~~--~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~ 468 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKI-----DM--KNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLS 468 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCE-----EE--EECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCC
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeE-----EE--eccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccc
Confidence 55677777632 35799999654442 21 11 111 111 12335666552268899964321111 124
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCC--eEEEEccCCcEEEEecCCccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSS--KIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~--~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
.+++||+.+++-....+.+. .-.-..+++-.+|.+||.....+ .++++|+....-..+.. .. ..+....+
T Consensus 469 dv~~yd~~t~~W~~~~~~p~----~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~---~g-~~p~~r~~ 540 (695)
T 2zwa_A 469 DNWIFDMKTREWSMIKSLSH----TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP---KD-EFFQNSLV 540 (695)
T ss_dssp CCEEEETTTTEEEECCCCSB----CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC---SS-GGGGSCCB
T ss_pred cEEEEeCCCCcEEECCCCCC----CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC---CC-CCCCcccc
Confidence 69999999876543322211 12223344434789999754322 79999998655432211 00 00111223
Q ss_pred cCeEEEccC-CeEEEEECC-------CCEEEEEeCCCCcee------EEEEec-cCCcCCCCCCeEEEcCCCcEEEEec-
Q 039428 207 LNGIVYHPD-GFLIVIHMC-------SGNLFKIDIRKEEEE------VKLIEL-RGGSSLSLGDGLALLSPTKLVVAGN- 270 (335)
Q Consensus 207 p~Gia~~~d-g~Lyvad~~-------~~~v~~~d~~~~~~~------~~~~~~-~g~~~~~~pdGia~d~~g~l~va~~- 270 (335)
...++++.+ +.||+.-.. .+.++++|+... . ...+.. +. . -..-..+++..++.+||.+.
T Consensus 541 ~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~--~w~~~~~W~~~~~~p~-~-~R~~~~~~~~~~~~iyv~GG~ 616 (695)
T 2zwa_A 541 SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE--NATEPITVIKKLQHPL-F-QRYGSQIKYITPRKLLIVGGT 616 (695)
T ss_dssp SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT--CSSCCEEEEEEEECGG-G-CCBSCEEEEEETTEEEEECCB
T ss_pred eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC--ccccceEEEEcCCCCC-C-CcccceEEEeCCCEEEEECCc
Confidence 444676766 789987532 367999999887 4 333321 11 0 01123555555589999843
Q ss_pred -------CCCeEEEEEcCCC-cE
Q 039428 271 -------PYPSARLVESSDG-WE 285 (335)
Q Consensus 271 -------~~~~~~v~~~~~~-~~ 285 (335)
..+.+.+++...+ |.
T Consensus 617 ~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 617 SPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp CSSCCCCTTTSEEEEETTTTEEE
T ss_pred cCCCCCCCCCeEEEEECCCCeEE
Confidence 1356788887665 76
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.24 Score=43.86 Aligned_cols=220 Identities=13% Similarity=0.111 Sum_probs=117.6
Q ss_pred EcCCCCEEEEEec----CC-------eEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecC-
Q 039428 56 WDDVGRRFLVSFL----DG-------GVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDV- 122 (335)
Q Consensus 56 ~d~~g~~~~~~~~----~~-------~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~- 122 (335)
...++.+|++... .+ .++++|+.+.+ |...+.+.. ..-+++++. ++.||+.....
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~----------W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 120 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE----------WVGLPPLPSARCLFGLGEV--DDKIYVVAGKDL 120 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTE----------EEECSCBSSCBCSCEEEEE--TTEEEEEEEEBT
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCc----------EEECCCCCccccccceEEE--CCEEEEEcCccC
Confidence 3456778777731 11 28899864333 332232221 233566665 68899975422
Q ss_pred -CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC------CCeEEEEccCCcEEEEecCCcc
Q 039428 123 -LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV------SSKIWKVGVEGQLLSIIRSPLF 195 (335)
Q Consensus 123 -~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~------~~~I~~~d~~g~~~~~~~~~~~ 195 (335)
.....+.+.+||+.+++-....+.+.+ . .-..+++ -+|.+||.... ...++++|+....-..+.. .
T Consensus 121 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r-~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~--~ 193 (318)
T 2woz_A 121 QTEASLDSVLCYDPVAAKWSEVKNLPIK---V-YGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAP--M 193 (318)
T ss_dssp TTCCEEEEEEEEETTTTEEEEECCCSSC---E-ESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECC--C
T ss_pred CCCcccceEEEEeCCCCCEeECCCCCCc---c-cccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCC--C
Confidence 111225699999998866544333211 1 1122333 56789997532 4579999998665433221 1
Q ss_pred ccccccccccccCeEEEccCCeEEEEECC-----CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 196 TAKEWYKNVFGLNGIVYHPDGFLIVIHMC-----SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 196 ~~~~~~~~~~~p~Gia~~~dg~Lyvad~~-----~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
. ....-.+.+.. ++.||+.-.. .+.++++|+... ....+...... ..-..+++ -++.+|+.+.
T Consensus 194 p------~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~--r~~~~~~~-~~~~i~v~GG 261 (318)
T 2woz_A 194 K------TPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTN--KWEVMTEFPQE--RSSISLVS-LAGSLYAIGG 261 (318)
T ss_dssp S------SCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTC--CEEECCCCSSC--CBSCEEEE-ETTEEEEECC
T ss_pred C------CCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCC--eEEECCCCCCc--ccceEEEE-ECCEEEEECC
Confidence 1 11123344544 6788876422 256889999887 44444311100 01123343 3578998843
Q ss_pred C--------------CCeEEEEEcCCC-cEEEEEeeeecCCCCCcceEEEEeCCeEEE
Q 039428 271 P--------------YPSARLVESSDG-WETASVVAKFNGPTHRVATAATVKDGRVYL 313 (335)
Q Consensus 271 ~--------------~~~~~v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV 313 (335)
. .+.+++++...+ |... . |..+.-.++++-+++|||
T Consensus 262 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-----~--~~~r~~~~~~~~~~~iyi 312 (318)
T 2woz_A 262 FAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM-----L--KEIRYASGASCLATRLNL 312 (318)
T ss_dssp BCCBC----CCBCCBCCCEEEEETTTTEEEEE-----E--SCCGGGTTCEEEEEEEEG
T ss_pred eeccCCCCceeccceeeeEEEEeCCCCEehhh-----c--ccccccccceeeCCEEEE
Confidence 1 245777777655 7643 1 222223355566889997
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.011 Score=58.76 Aligned_cols=112 Identities=9% Similarity=0.113 Sum_probs=69.8
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeC--------CC
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV--------VS 174 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~--------~~ 174 (335)
..+.+.+ ++.+++. . .. ..|+.+|.++++......... ........++++|||+ +.++.. ..
T Consensus 19 ~~~~~s~-dg~~~~~-~-~d----~~i~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~ 89 (719)
T 1z68_A 19 FFPNWIS-GQEYLHQ-S-AD----NNIVLYNIETGQSYTILSNRT--MKSVNASNYGLSPDRQFVYLESDYSKLWRYSYT 89 (719)
T ss_dssp CCCEESS-SSEEEEE-C-TT----SCEEEEESSSCCEEEEECHHH--HHTTTCSEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred CccEECC-CCeEEEE-c-CC----CCEEEEEcCCCcEEEEEcccc--ccccceeeEEECCCCCeEEEEecCceeEEeecc
Confidence 3667876 5665553 2 21 359999999987664332210 0011367899999997 333322 24
Q ss_pred CeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 175 SKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 175 ~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
+.|+.+|.++.... ....+. .....++++||| .|.++. .+.|+.++..++
T Consensus 90 ~~i~~~d~~~g~~~--~~~~l~--------~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g 140 (719)
T 1z68_A 90 ATYYIYDLSNGEFV--RGNELP--------RPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGD 140 (719)
T ss_dssp EEEEEEETTTTEEC--CSSCCC--------SSBCCEEECSSTTCEEEEE--TTEEEEESSTTS
T ss_pred eEEEEEECCCCccc--cceecC--------cccccceECCCCCEEEEEE--CCeEEEEeCCCC
Confidence 78999998876541 000111 136789999999 666553 568999999876
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.28 Score=42.95 Aligned_cols=209 Identities=14% Similarity=0.124 Sum_probs=110.2
Q ss_pred CeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCC
Q 039428 70 GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSG 148 (335)
Q Consensus 70 ~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~ 148 (335)
..++.+|+.+.. |...+.+.. ..-+++++. ++.||+..+.......+.+.+||+.+++-....+.+.
T Consensus 30 ~~~~~~d~~~~~----------W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~ 97 (302)
T 2xn4_A 30 RSVECYDFKEER----------WHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD 97 (302)
T ss_dssp CCEEEEETTTTE----------EEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred CcEEEEcCcCCc----------EeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCc
Confidence 568899864333 222222111 223455554 6889996332111122469999999886554333321
Q ss_pred CccCCCCCCceeECCCCcEEEEeCC-----CCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEEC
Q 039428 149 KSEEKSTADDIAVDAEGNAYVTDVV-----SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHM 223 (335)
Q Consensus 149 ~~~~~~~p~~~~vd~~G~lyV~d~~-----~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~ 223 (335)
+ ... ..+++ -++.+||.... ...++++|+....-..+.. +. ....-.+.+.. ++.||+.-.
T Consensus 98 ~---r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~p------~~r~~~~~~~~-~~~iyv~GG 163 (302)
T 2xn4_A 98 R---RST-LGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP--MN------TRRSSVGVGVV-GGLLYAVGG 163 (302)
T ss_dssp C---CBS-CEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC--CS------SCCBSCEEEEE-TTEEEEECC
T ss_pred c---ccc-eEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC--CC------CcccCceEEEE-CCEEEEEeC
Confidence 1 112 22333 36789996432 2468899988655443221 11 11223344444 778988632
Q ss_pred C-------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC-----CCeEEEEEcCCC-cEEEEEe
Q 039428 224 C-------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP-----YPSARLVESSDG-WETASVV 290 (335)
Q Consensus 224 ~-------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~-----~~~~~v~~~~~~-~~~~~~~ 290 (335)
. .+.++++|+... ....+...... .. -..+++. ++.+|+.+.. .+.+.+++...+ |...
T Consensus 164 ~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~-r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--- 235 (302)
T 2xn4_A 164 YDVASRQCLSTVECYNATTN--EWTYIAEMSTR-RS-GAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV--- 235 (302)
T ss_dssp EETTTTEECCCEEEEETTTT--EEEEECCCSSC-CB-SCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEE---
T ss_pred CCCCCCccccEEEEEeCCCC--cEEECCCCccc-cc-cccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeC---
Confidence 1 356999999887 55554321101 11 1234433 5789999431 256778887655 6543
Q ss_pred eeecCCCCCcceEEEEeCCeEEEE
Q 039428 291 AKFNGPTHRVATAATVKDGRVYLS 314 (335)
Q Consensus 291 ~~~~~p~~~~Pt~va~~~g~lyV~ 314 (335)
.....+. .-.+++.-+++|||.
T Consensus 236 ~~~~~~r--~~~~~~~~~~~i~v~ 257 (302)
T 2xn4_A 236 ADMNMCR--RNAGVCAVNGLLYVV 257 (302)
T ss_dssp CCCSSCC--BSCEEEEETTEEEEE
T ss_pred CCCCCcc--ccCeEEEECCEEEEE
Confidence 2222222 223455568999984
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.25 Score=49.13 Aligned_cols=160 Identities=13% Similarity=0.125 Sum_probs=86.7
Q ss_pred eeeeEEcCCCCEEEEE-ecC----CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC--
Q 039428 51 CETAKWDDVGRRFLVS-FLD----GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL-- 123 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~~----~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~-- 123 (335)
-.+++|+|+|+.+..+ ... ..|+++|..+++. +.. . .++. ...++++. ++..||.+..+..
T Consensus 131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~----~~~--~--~~~~---k~~~~~Ws-Dg~~l~y~~~~~~~~ 198 (693)
T 3iuj_A 131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP----LET--P--LKDV---KFSGISWL-GNEGFFYSSYDKPDG 198 (693)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE----EEE--E--EEEE---ESCCCEEE-TTTEEEEEESSCCC-
T ss_pred EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC----Ccc--c--cCCc---eeccEEEe-CCCEEEEEEecCccc
Confidence 4678999999966655 323 3699999765551 211 1 1111 12355666 5677777654421
Q ss_pred -----CCccceEEEEECCCCeE--EEEeecCCCccCCCCCCceeECCCCc-EEEEeC---CCCeEEEEccCCc---EEEE
Q 039428 124 -----GNKYSALAAYDLSTWKR--LFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV---VSSKIWKVGVEGQ---LLSI 189 (335)
Q Consensus 124 -----~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~---~~~~I~~~d~~g~---~~~~ 189 (335)
......|++++..+++. ...... +......-.++.+++||+ ++++.. ....||.++.++. ...+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGA--IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESC--SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEec--CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 01225699998876532 111221 110012334688999997 545432 2358999996532 3332
Q ss_pred ecCCccccccccccccccCeEEEccCC-eEEEEECC---CCEEEEEeCCCC
Q 039428 190 IRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMC---SGNLFKIDIRKE 236 (335)
Q Consensus 190 ~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~---~~~v~~~d~~~~ 236 (335)
... . ...--.++++| .||+.... +.+|++++++++
T Consensus 277 ~~~--~----------~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~ 315 (693)
T 3iuj_A 277 QGD--L----------DADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANP 315 (693)
T ss_dssp ECS--S----------SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred eCC--C----------CceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 111 0 01111256665 77655433 479999999876
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.33 Score=42.79 Aligned_cols=220 Identities=14% Similarity=0.088 Sum_probs=115.6
Q ss_pred CCCEEEEEec----CCeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEec----CCCCccce
Q 039428 59 VGRRFLVSFL----DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTD----VLGNKYSA 129 (335)
Q Consensus 59 ~g~~~~~~~~----~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D----~~~~~~~~ 129 (335)
++.+|++... .+.++++|+.+.+ |...+.+.. ..-+++++. ++.||+..+. ......+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~----------W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~ 91 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGT----------WLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSA 91 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTE----------EEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCC
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCe----------EeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecce
Confidence 4556666531 2579999964333 322222211 223455554 6889996321 10011245
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-----CCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-----SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-----~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
+++||+.+++-....+.+.+ .... .+++ -+|.+||.... ...++++|+....-..+.. +. ..
T Consensus 92 ~~~~d~~~~~W~~~~~~p~~---r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p------~~ 158 (308)
T 1zgk_A 92 LDCYNPMTNQWSPCAPMSVP---RNRI-GVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP--ML------TR 158 (308)
T ss_dssp EEEEETTTTEEEECCCCSSC---CBTC-EEEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEECCC--CS------SC
T ss_pred EEEECCCCCeEeECCCCCcC---cccc-EEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCC--CC------cc
Confidence 99999998865433222111 1222 2222 36789997431 3578999998655442211 11 11
Q ss_pred cccCeEEEccCCeEEEEECC-----CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC-----CCe
Q 039428 205 FGLNGIVYHPDGFLIVIHMC-----SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP-----YPS 274 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyvad~~-----~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~-----~~~ 274 (335)
..-.+.+.. ++.||+.-.. .+.++++|+... ....+...... ..-..+++. ++.+|+.+.. .+.
T Consensus 159 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~--r~~~~~~~~-~~~iyv~GG~~~~~~~~~ 232 (308)
T 1zgk_A 159 RIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTI--RSGAGVCVL-HNCIYAAGGYDGQDQLNS 232 (308)
T ss_dssp CBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSC--CBSCEEEEE-TTEEEEECCBCSSSBCCC
T ss_pred ccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCc--cccceEEEE-CCEEEEEeCCCCCCccce
Confidence 223344444 6788886422 467999999887 44444311100 112234444 6789998531 256
Q ss_pred EEEEEcCCC-cEEEEEeeeecCCCCCcceEEEEeCCeEEEE
Q 039428 275 ARLVESSDG-WETASVVAKFNGPTHRVATAATVKDGRVYLS 314 (335)
Q Consensus 275 ~~v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~ 314 (335)
+.+++...+ |... .....+. .-.++++-+++|||.
T Consensus 233 v~~yd~~~~~W~~~---~~~p~~r--~~~~~~~~~~~i~v~ 268 (308)
T 1zgk_A 233 VERYDVETETWTFV---APMKHRR--SALGITVHQGRIYVL 268 (308)
T ss_dssp EEEEETTTTEEEEC---CCCSSCC--BSCEEEEETTEEEEE
T ss_pred EEEEeCCCCcEEEC---CCCCCCc--cceEEEEECCEEEEE
Confidence 777887655 6542 2222222 223455568999984
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.33 Score=42.42 Aligned_cols=209 Identities=15% Similarity=0.139 Sum_probs=110.3
Q ss_pred CeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCe---EEEEee
Q 039428 70 GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWK---RLFLTQ 145 (335)
Q Consensus 70 ~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~---~~~~~~ 145 (335)
+.++++|+.+.+ |...+.+.. ..-++++.. ++.||+...-......+.+++||+.+++ -....+
T Consensus 31 ~~~~~~d~~~~~----------W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~ 98 (301)
T 2vpj_A 31 DVVEKYDPKTQE----------WSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAP 98 (301)
T ss_dssp CCEEEEETTTTE----------EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECC
T ss_pred eEEEEEcCCCCe----------EEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCC
Confidence 578999964333 322222211 223455554 6889996332111112469999998876 443323
Q ss_pred cCCCccCCCCCCceeECCCCcEEEEeCC-----CCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEE
Q 039428 146 LSGKSEEKSTADDIAVDAEGNAYVTDVV-----SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIV 220 (335)
Q Consensus 146 ~~~~~~~~~~p~~~~vd~~G~lyV~d~~-----~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyv 220 (335)
.+. . .... .+++ -++.+||.... ...++++|+....-..+.. .. ....-.+.+.. ++.||+
T Consensus 99 ~p~--~-r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~p------~~r~~~~~~~~-~~~iyv 164 (301)
T 2vpj_A 99 MNV--R-RGLA-GATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD--MQ------TAREGAGLVVA-SGVIYC 164 (301)
T ss_dssp CSS--C-CBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE--CS------SCCBSCEEEEE-TTEEEE
T ss_pred CCC--C-ccce-eEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCC--CC------CCcccceEEEE-CCEEEE
Confidence 211 1 1222 2332 36789997532 3579999988655432211 11 11123344444 778988
Q ss_pred EECC-----CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC-----CCeEEEEEcCCC-cEEEEE
Q 039428 221 IHMC-----SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP-----YPSARLVESSDG-WETASV 289 (335)
Q Consensus 221 ad~~-----~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~-----~~~~~v~~~~~~-~~~~~~ 289 (335)
.-.. .+.++++|+... ....+.... .... -..++.. ++.+|+.+.. .+.+.+++...+ |...
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p-~~r~-~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~-- 237 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTG--HWTNVTPMA-TKRS-GAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV-- 237 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTT--EEEEECCCS-SCCB-SCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEE--
T ss_pred ECCCCCCcccceEEEEeCCCC--cEEeCCCCC-cccc-cceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCcEEEC--
Confidence 6422 467999999887 555553111 1011 1233333 5789998431 356777887655 6542
Q ss_pred eeeecCCCCCcceEEEEeCCeEEEE
Q 039428 290 VAKFNGPTHRVATAATVKDGRVYLS 314 (335)
Q Consensus 290 ~~~~~~p~~~~Pt~va~~~g~lyV~ 314 (335)
.....+. .-.+++.-+++|||.
T Consensus 238 -~~~p~~r--~~~~~~~~~~~i~v~ 259 (301)
T 2vpj_A 238 -TSMTTPR--CYVGATVLRGRLYAI 259 (301)
T ss_dssp -CCCSSCC--BSCEEEEETTEEEEE
T ss_pred -CCCCCcc--cceeEEEECCEEEEE
Confidence 2222222 223455568999984
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.28 Score=49.09 Aligned_cols=201 Identities=12% Similarity=0.141 Sum_probs=103.0
Q ss_pred eeeEEcCCCCEEEEE-ecC-------------CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEE
Q 039428 52 ETAKWDDVGRRFLVS-FLD-------------GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLV 117 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~~-------------~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v 117 (335)
.+++|+|+ +.++.+ ... .+|++++..++.. +...+...+... ....++.+++++..|++
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-----~~~lv~~~~~~~-~~~~~~~~SpDG~~l~~ 284 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS-----ADQPVFATPELP-KRGHGASVSSDGRWVVI 284 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG-----GCEEEECCTTCT-TCEEEEEECTTSCEEEE
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch-----hCEEEeccCCCC-eEEEEEEECCCCCEEEE
Confidence 47899999 755555 322 2589998543321 111122222210 12467888874444555
Q ss_pred EEecCCCCccceEEEEECCCC--e-EEEEeecCCCccCCCCCCceeECCCCc-EEEEeC---CCCeEEEEccCC---cEE
Q 039428 118 AFTDVLGNKYSALAAYDLSTW--K-RLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV---VSSKIWKVGVEG---QLL 187 (335)
Q Consensus 118 ~~~D~~~~~~~~v~~~d~~~~--~-~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~---~~~~I~~~d~~g---~~~ 187 (335)
...+.... .+.|+.+|.+++ + ....... ....... ++++|. +|+... .+.+|++++.++ +..
T Consensus 285 ~~~~~~~~-~~~l~~~d~~~~~~~~~~~l~~~------~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 356 (741)
T 1yr2_A 285 TSSEGTDP-VNTVHVARVTNGKIGPVTALIPD------LKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFD 356 (741)
T ss_dssp EEECTTCS-CCEEEEEEEETTEECCCEEEECS------SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEE
T ss_pred EEEccCCC-cceEEEEECCCCCCcccEEecCC------CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccE
Confidence 43332111 157999998876 3 3322211 1111112 346664 666532 367899999875 223
Q ss_pred EEecCCccccccccccccccCeEEEccCCeEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-
Q 039428 188 SIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK- 264 (335)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~- 264 (335)
.++... .....+++++ ++.|+++...+ .+|++++++++ ..+.+..++ .....++.+++++.
T Consensus 357 ~l~~~~----------~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~--~~~~l~~~~---~~~v~~~~~s~d~~~ 420 (741)
T 1yr2_A 357 TVVPES----------KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK--PAGAVSLPG---IGSASGLSGRPGDRH 420 (741)
T ss_dssp EEECCC----------SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC--EEEECBCSS---SCEEEEEECCBTCSC
T ss_pred EEecCC----------CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC--ceeeccCCC---CeEEEEeecCCCCCE
Confidence 322110 0114567777 56777665544 47889988665 455554322 12245677777764
Q ss_pred EEEE-ecCC--CeEEEEEcCCC
Q 039428 265 LVVA-GNPY--PSARLVESSDG 283 (335)
Q Consensus 265 l~va-~~~~--~~~~v~~~~~~ 283 (335)
++++ .... ..+..++...+
T Consensus 421 l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 421 AYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEEcCCCCCCEEEEEECCCC
Confidence 5555 2211 24555555443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.42 Score=42.75 Aligned_cols=187 Identities=8% Similarity=-0.013 Sum_probs=98.4
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
+.+++..+++++|++. ..+.|++-+. .|+. .+ .+..+. .....++++++ ++++|++.. . ..+
T Consensus 124 ~~~i~~~~~~~~~~~~-~~g~v~~S~D-gG~t----W~---~~~~~~--~~~~~~~~~~~-~~~~~~~g~--~----G~~ 185 (327)
T 2xbg_A 124 PRLIKALGNGSAEMIT-NVGAIYRTKD-SGKN----WQ---ALVQEA--IGVMRNLNRSP-SGEYVAVSS--R----GSF 185 (327)
T ss_dssp EEEEEEEETTEEEEEE-TTCCEEEESS-TTSS----EE---EEECSC--CCCEEEEEECT-TSCEEEEET--T----SSE
T ss_pred eEEEEEECCCCEEEEe-CCccEEEEcC-CCCC----CE---EeecCC--CcceEEEEEcC-CCcEEEEEC--C----CcE
Confidence 4567766666655544 4667888753 3441 11 111121 12456888886 678887532 1 236
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCe
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
++-+-.+++........ . ......++++++|++|+... .+.+++-+.+ |+.-. ....|. .+.......
T Consensus 186 ~~S~d~gG~tW~~~~~~---~-~~~~~~~~~~~~g~~~~~~~-~G~~~~s~~D~G~tW~-----~~~~~~-~~~~~~~~~ 254 (327)
T 2xbg_A 186 YSTWEPGQTAWEPHNRT---T-SRRLHNMGFTPDGRLWMIVN-GGKIAFSDPDNSENWG-----ELLSPL-RRNSVGFLD 254 (327)
T ss_dssp EEEECTTCSSCEEEECC---S-SSCEEEEEECTTSCEEEEET-TTEEEEEETTEEEEEC-----CCBCTT-SSCCSCEEE
T ss_pred EEEeCCCCCceeECCCC---C-CCccceeEECCCCCEEEEeC-CceEEEecCCCCCeeE-----eccCCc-ccCCcceEE
Confidence 66543223221111221 1 24567788999999998754 4677776455 43322 111110 011123567
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
|++++++.+|++.. .+.|++- .++++ ..+.+...... -..-..+++++++++|++..
T Consensus 255 v~~~~~~~~~~~g~-~g~i~~S-~DgG~-tW~~~~~~~~~-~~~~~~v~~~~~~~~~~~G~ 311 (327)
T 2xbg_A 255 LAYRTPNEVWLAGG-AGALLCS-QDGGQ-TWQQDVDVKKV-PSNFYKILFFSPDQGFILGQ 311 (327)
T ss_dssp EEESSSSCEEEEES-TTCEEEE-SSTTS-SCEECGGGTTS-SSCCCEEEEEETTEEEEECS
T ss_pred EEecCCCEEEEEeC-CCeEEEe-CCCCc-ccEEcCccCCC-CCCeEEEEEECCCceEEEcC
Confidence 78888888888764 4556654 34432 44444321000 12246788877778887755
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.58 Score=45.24 Aligned_cols=200 Identities=13% Similarity=0.119 Sum_probs=115.1
Q ss_pred CCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEe--CCCCeEEEEEecCC----CC------
Q 039428 59 VGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVD--RPRNRLLVAFTDVL----GN------ 125 (335)
Q Consensus 59 ~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d--~~~g~l~v~~~D~~----~~------ 125 (335)
+|+.+|+. -.+.+|.|++...=+ +. +.+..|... ..+|+++- |..+.+++.. ... ++
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~-----~d--~Ii~iPn~~--~~Hg~~~~~~p~T~yv~~~~-e~~~P~pndg~~~~~ 210 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMK-----CD--KMITVPNVQ--AIHGLRLQKVPHTKYVFANA-EFIIPHPNDGKVFDL 210 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTE-----EE--EEEECTTCS--CEEEEEECCSSBCCEEEEEE-CSCEESSCSSSCCCT
T ss_pred eeEEEEEecCCCcceEEEECCcEe-----ec--eeEeCCCCc--CcccccccccCCccEEEecc-eeeccCCCCCccccc
Confidence 46666666 567899999853221 22 355667654 67899886 4445555432 211 10
Q ss_pred ----ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC---------------CeEEEEcc----
Q 039428 126 ----KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS---------------SKIWKVGV---- 182 (335)
Q Consensus 126 ----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~---------------~~I~~~d~---- 182 (335)
+.+....+|.++.++.+.+... ..+.....|++|...++.+++ .-+..++-
T Consensus 211 ~~~~~y~~f~~iD~~tm~v~~Qv~v~------gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie 284 (638)
T 3sbq_A 211 QDENSYTMYNAIDAETMEMAFQVIVD------GNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVE 284 (638)
T ss_dssp TSTTEEEEEEEEETTTCSEEEEEEES------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHH
T ss_pred CChhhceEEEEEcCCccEEEEEEEcC------CChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHH
Confidence 1233456788887777665542 245667778888766654422 23333331
Q ss_pred ----CCcEEE-------EecCCccc--ccc---ccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCC------c--
Q 039428 183 ----EGQLLS-------IIRSPLFT--AKE---WYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKE------E-- 237 (335)
Q Consensus 183 ----~g~~~~-------~~~~~~~~--~~~---~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~------~-- 237 (335)
+|+... ++....-. .+. ..|...+|+|+-++||| +++++.-.+.++.+++.+.- +
T Consensus 285 ~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~ 364 (638)
T 3sbq_A 285 AAVKAGDFITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLA 364 (638)
T ss_dssp HHHHTTCCBCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCS
T ss_pred HHHhcCCeEEECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcccc
Confidence 222211 11000000 000 12345679999999999 99999999999999998741 0
Q ss_pred ---ee-EEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 238 ---EE-VKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 238 ---~~-~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
.. ...++ .| -+|--.++|++|+.|.+-.-...+...+
T Consensus 365 ~~~~~~~ae~e-~G----lGPlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 365 DPRDVIVGEPE-LG----LGPLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CGGGGEEECCB-CC----SCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred CcccceEeecc-CC----CcccEEEECCCCceEeeeeecceEEEEe
Confidence 00 11122 12 3599999999999999965334444433
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0033 Score=57.88 Aligned_cols=146 Identities=12% Similarity=0.093 Sum_probs=60.3
Q ss_pred eeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 53 TAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 53 gia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
++++ +++.+|+...++.|+.+|..+|+ ++ |....+ ......+.. ++.+|++. ... +.|+.
T Consensus 4 sP~v--~~~~v~~gs~dg~v~a~d~~tG~----~~----W~~~~~----~~~s~p~~~-~g~~~v~~--s~d---g~l~a 63 (369)
T 2hz6_A 4 TVTL--PETLLFVSTLDGSLHAVSKRTGS----IK----WTLKED----PVLQVPTHV-EEPAFLPD--PND---GSLYT 63 (369)
T ss_dssp ------CTTEEEEEETTSEEEEEETTTCC----EE----EEEECC----CSCCCC------CCEEEC--TTT---CCEEE
T ss_pred CCee--eCCEEEEEcCCCEEEEEECCCCC----EE----EEecCC----CceecceEc-CCCEEEEe--CCC---CEEEE
Confidence 3455 34567777678999999976676 12 211111 111111222 56677742 111 35999
Q ss_pred EECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeEE
Q 039428 133 YDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGIV 211 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia 211 (335)
+|.++|+.++......+. .. ....++..++.+|+. +..+.|+.+|++ |+....+ .. .....
T Consensus 64 ~d~~tG~~~w~~~~~~~~--~~-~~sp~~~~~~~v~~g-~~dg~v~a~D~~tG~~~w~~-----~~---------~~~~~ 125 (369)
T 2hz6_A 64 LGSKNNEGLTKLPFTIPE--LV-QASPCRSSDGILYMG-KKQDIWYVIDLLTGEKQQTL-----SS---------AFADS 125 (369)
T ss_dssp C-----CCSEECSCCHHH--HH-TTCSCC-----CCCC-EEEEEEEEECCC-----------------------------
T ss_pred EECCCCceeeeeeccCcc--cc-ccCceEecCCEEEEE-eCCCEEEEEECCCCcEEEEe-----cC---------CCccc
Confidence 999888765444331110 00 011122235677764 345789999987 5443311 11 11123
Q ss_pred EccCC-eEEEEECCCCEEEEEeCCCCc
Q 039428 212 YHPDG-FLIVIHMCSGNLFKIDIRKEE 237 (335)
Q Consensus 212 ~~~dg-~Lyvad~~~~~v~~~d~~~~~ 237 (335)
.+|++ .+|++. .++.|+.+|+.+++
T Consensus 126 ~~p~~~~v~~~~-~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 126 LSPSTSLLYLGR-TEYTITMYDTKTRE 151 (369)
T ss_dssp -------EEEEE-EEEEEECCCSSSSS
T ss_pred ccccCCEEEEEe-cCCEEEEEECCCCC
Confidence 34454 777764 46789999987763
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=96.30 E-value=0.1 Score=52.24 Aligned_cols=140 Identities=9% Similarity=0.049 Sum_probs=81.2
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEE-eC-------C
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVT-DV-------V 173 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~-d~-------~ 173 (335)
...+...+ ++.+++. .| ..|..||.++++............-....++++++|||+ ++++ +. .
T Consensus 19 ~~~~~w~~-dg~~~~~-~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 19 LYSLRWIS-DHEYLYK-QE------NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCCEEECS-SSEEEEE-ET------TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred ccccEECC-CCcEEEE-cC------CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence 35778886 6666653 22 359999999887654333211111011235688999997 3333 21 1
Q ss_pred CCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcC--
Q 039428 174 SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSS-- 250 (335)
Q Consensus 174 ~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~-- 250 (335)
.+.++.+|.+++..+.+ .. ........+++||| .|.++ .++.|+..+..++ ....+...+...
T Consensus 91 ~~~~~~~d~~~~~~~~l-----~~-----~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~--~~~~lt~~g~~~~~ 156 (740)
T 4a5s_A 91 TASYDIYDLNKRQLITE-----ER-----IPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNL--PSYRITWTGKEDII 156 (740)
T ss_dssp EEEEEEEETTTTEECCS-----SC-----CCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTS--CCEECCSCCBTTTE
T ss_pred ceEEEEEECCCCcEEEc-----cc-----CCCcceeeEECCCCCEEEEE--ECCeEEEEECCCC--ceEEEcCCCCccce
Confidence 26788999887665422 11 01125678999999 66555 3468999998876 333332222110
Q ss_pred -------------CCCCCeEEEcCCCc
Q 039428 251 -------------LSLGDGLALLSPTK 264 (335)
Q Consensus 251 -------------~~~pdGia~d~~g~ 264 (335)
+....++++.|||+
T Consensus 157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~ 183 (740)
T 4a5s_A 157 YNGITDWVYEEEVFSAYSALWWSPNGT 183 (740)
T ss_dssp EESBCCHHHHHHTSSSSBCEEECTTSS
T ss_pred ecCcccccccchhcCCCcceEECCCCC
Confidence 12234688999986
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.59 Score=41.92 Aligned_cols=223 Identities=14% Similarity=0.067 Sum_probs=113.8
Q ss_pred CCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcC--CCCcceEEEeCCCCeEEEEEec-C--C--CCccceE
Q 039428 59 VGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV--GNATMGIAVDRPRNRLLVAFTD-V--L--GNKYSAL 130 (335)
Q Consensus 59 ~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~--~~~p~Gi~~d~~~g~l~v~~~D-~--~--~~~~~~v 130 (335)
++.+|++. ...+.++++|...... .|...+.+. ...-+++++. ++.|||..+. . . ....+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~--------~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v 88 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDK--------KWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDV 88 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSC--------CEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCC--------CeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccE
Confidence 56677777 5567899999642110 133333222 1233556655 6889996322 0 0 0112469
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCC-ceeECCCCcEEEEeCC------------------------------------
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTAD-DIAVDAEGNAYVTDVV------------------------------------ 173 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~-~~~vd~~G~lyV~d~~------------------------------------ 173 (335)
++||+.+++-....... + ..+.. .+++ -++++||....
T Consensus 89 ~~yd~~~~~W~~~~~~~-p---~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (357)
T 2uvk_A 89 HKYNPKTNSWVKLMSHA-P---MGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED 163 (357)
T ss_dssp EEEETTTTEEEECSCCC-S---SCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred EEEeCCCCcEEECCCCC-C---cccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence 99999988654332221 1 11222 2333 57889997643
Q ss_pred ---CCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEEC------CCCEEEEEeCCCCceeEEEEe
Q 039428 174 ---SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHM------CSGNLFKIDIRKEEEEVKLIE 244 (335)
Q Consensus 174 ---~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~------~~~~v~~~d~~~~~~~~~~~~ 244 (335)
...++++|+....-+.+.. +.. ....-.++++. ++.||+.-. ....+++++++........+.
T Consensus 164 ~~~~~~v~~yd~~~~~W~~~~~--~p~-----~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~ 235 (357)
T 2uvk_A 164 YFFNKFLLSFDPSTQQWSYAGE--SPW-----YGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLA 235 (357)
T ss_dssp GCCCCEEEEEETTTTEEEEEEE--CSS-----CCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECC
T ss_pred cCCcccEEEEeCCCCcEEECCC--CCC-----CCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecC
Confidence 3689999998654332211 110 01112455554 678887632 145688888733210333332
Q ss_pred ccCCcCCCCCC---e-EEEcCCCcEEEEecCC----------------------CeEEEEEcCCC-cEEEEEeeeecCCC
Q 039428 245 LRGGSSLSLGD---G-LALLSPTKLVVAGNPY----------------------PSARLVESSDG-WETASVVAKFNGPT 297 (335)
Q Consensus 245 ~~g~~~~~~pd---G-ia~d~~g~l~va~~~~----------------------~~~~v~~~~~~-~~~~~~~~~~~~p~ 297 (335)
. +..|. + .+...++.+||.+... +.+.+++...+ |+.. ..+..|.
T Consensus 236 --~---~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r 307 (357)
T 2uvk_A 236 --P---VSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS---GELSQGR 307 (357)
T ss_dssp --C---SSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE---EECSSCC
T ss_pred --C---CCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC---CCCCCCc
Confidence 1 11221 2 1333467899984310 23566776554 7643 3333333
Q ss_pred CCcceEEEEeCCeEEEE
Q 039428 298 HRVATAATVKDGRVYLS 314 (335)
Q Consensus 298 ~~~Pt~va~~~g~lyV~ 314 (335)
.. .+++.-+++|||.
T Consensus 308 ~~--~~~~~~~~~i~v~ 322 (357)
T 2uvk_A 308 AY--GVSLPWNNSLLII 322 (357)
T ss_dssp BS--SEEEEETTEEEEE
T ss_pred cc--ceeEEeCCEEEEE
Confidence 22 3455568999983
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.77 Score=45.56 Aligned_cols=197 Identities=15% Similarity=0.134 Sum_probs=98.0
Q ss_pred eeeEEcCCCCEEEEE-ecC------------CeEEEEECCCCCCCcceeeeeEEeecCC-cCCCCcceEEEeCCCCeEEE
Q 039428 52 ETAKWDDVGRRFLVS-FLD------------GGVGQVLVPDEYSPGTVLEEVKLVKEDD-VVGNATMGIAVDRPRNRLLV 117 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~~------------~~I~~~d~~~g~~~~~v~~~~~~~~~~~-~~~~~p~Gi~~d~~~g~l~v 117 (335)
.+++|. ||+.++.+ ... .+|++++..++.. +...+...+. .. ....++.+++++..|++
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-----~~~~v~~~~~~~~-~~~~~~~~SpDg~~l~~ 250 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE-----DDRLVFGAIPAQH-HRYVGATVTEDDRFLLI 250 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGG-----GCEEEESCSGGGC-CSEEEEEECTTSCEEEE
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcc-----cceEEEecCCCCC-eEEEEEEEcCCCCEEEE
Confidence 467999 88755555 331 3588887543321 1111222222 11 12357788874445555
Q ss_pred EEecCCCCccceEEEEECCCC--eEEEEeecCCCccCCCCCCceeECCCC-cEEEEeC---CCCeEEEEccCCcE----E
Q 039428 118 AFTDVLGNKYSALAAYDLSTW--KRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDV---VSSKIWKVGVEGQL----L 187 (335)
Q Consensus 118 ~~~D~~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~---~~~~I~~~d~~g~~----~ 187 (335)
........ +.|+.+|.+++ +....... ...-... ++++| .+|+... .+.+|++++.++.. .
T Consensus 251 ~~~~~~~~--~~i~~~d~~~~~~~~~~l~~~------~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~ 321 (693)
T 3iuj_A 251 SAANSTSG--NRLYVKDLSQENAPLLTVQGD------LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWR 321 (693)
T ss_dssp EEESSSSC--CEEEEEETTSTTCCCEEEECS------SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE
T ss_pred EEccCCCC--cEEEEEECCCCCCceEEEeCC------CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccE
Confidence 43322111 47999998765 33322111 1111111 45554 5666532 25799999987532 1
Q ss_pred EEecCCccccccccccccccCeEEEccCC-eEEEEECCCC--EEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-
Q 039428 188 SIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSG--NLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT- 263 (335)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~--~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g- 263 (335)
.++.. . ..-+.+++++ +|+++...++ +|++++++++ ..+.+..++. ....++..++++
T Consensus 322 ~l~~~----~---------~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~--~~~~l~~p~~---~~~~~~~~~~d~~ 383 (693)
T 3iuj_A 322 DLIPE----R---------QQVLTVHSGSGYLFAEYMVDATARVEQFDYEGK--RVREVALPGL---GSVSGFNGKHDDP 383 (693)
T ss_dssp EEECC----C---------SSCEEEEEETTEEEEEEEETTEEEEEEECTTSC--EEEEECCSSS---SEEEECCCCTTCS
T ss_pred EEecC----C---------CCEEEEEEECCEEEEEEEECCeeEEEEEECCCC--eeEEeecCCC---ceEEeeecCCCCC
Confidence 21110 0 1112677766 7776655554 7999999876 5555554321 112234444454
Q ss_pred cEEEEec---CCCeEEEEEcCC
Q 039428 264 KLVVAGN---PYPSARLVESSD 282 (335)
Q Consensus 264 ~l~va~~---~~~~~~v~~~~~ 282 (335)
.+++... ....+..++...
T Consensus 384 ~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 384 ALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp CEEEEEECSSSCCEEEEECTTT
T ss_pred EEEEEecCCCCCCEEEEEECCC
Confidence 4665522 113455555433
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.79 Score=40.08 Aligned_cols=199 Identities=9% Similarity=0.018 Sum_probs=106.7
Q ss_pred CCCEEEEEec----CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC-CCCccceEEEE
Q 039428 59 VGRRFLVSFL----DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV-LGNKYSALAAY 133 (335)
Q Consensus 59 ~g~~~~~~~~----~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~-~~~~~~~v~~~ 133 (335)
++.+|++... .+.++++|+.+.++ .+ ....|. ...-+.+++. ++.||+..+-. .....+.+.+|
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W-----~~--~~~~p~--~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 123 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSW-----YS--KLGPPT--PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECY 123 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEE-----EE--EECCSS--CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeE-----EE--CCCCCc--cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEE
Confidence 5566666632 36899999654431 11 211121 1233455554 68899964321 11112469999
Q ss_pred ECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC---------CCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 134 DLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV---------SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~---------~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
|+.+++-......+.+ ... ..+++ -++++||.... ...++++|+....-..+.. +. ..
T Consensus 124 d~~~~~W~~~~~~p~~---r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~--~p------~~ 190 (306)
T 3ii7_A 124 DTRTESWHTKPSMLTQ---RCS-HGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP--MI------EA 190 (306)
T ss_dssp ETTTTEEEEECCCSSC---CBS-CEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC--CS------SC
T ss_pred eCCCCceEeCCCCcCC---cce-eEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC--cc------ch
Confidence 9998865543333211 111 12222 36789997431 5679999998665443321 11 11
Q ss_pred cccCeEEEccCCeEEEEECC-----CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec-----CCCe
Q 039428 205 FGLNGIVYHPDGFLIVIHMC-----SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN-----PYPS 274 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyvad~~-----~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~-----~~~~ 274 (335)
..-.++++. ++.||+.-.. .+.++++|+... ..+.+...... ..-..+++. ++.+|+.+. ..+.
T Consensus 191 r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~--r~~~~~~~~-~~~i~v~GG~~~~~~~~~ 264 (306)
T 3ii7_A 191 RKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN--EWKMVSPMPWK--GVTVKCAAV-GSIVYVLAGFQGVGRLGH 264 (306)
T ss_dssp CBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTT--EEEECCCCSCC--BSCCEEEEE-TTEEEEEECBCSSSBCCE
T ss_pred hhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC--cEEECCCCCCC--ccceeEEEE-CCEEEEEeCcCCCeeeee
Confidence 223444444 6788887322 357999999887 45444311100 112234443 678999843 2356
Q ss_pred EEEEEcCCC-cEEE
Q 039428 275 ARLVESSDG-WETA 287 (335)
Q Consensus 275 ~~v~~~~~~-~~~~ 287 (335)
+.+++...+ |+..
T Consensus 265 ~~~yd~~~~~W~~~ 278 (306)
T 3ii7_A 265 ILEYNTETDKWVAN 278 (306)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEEEcCCCCeEEeC
Confidence 777887665 7654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.92 Score=40.45 Aligned_cols=186 Identities=9% Similarity=0.010 Sum_probs=102.7
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCC-cCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDD-VVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~-~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
...++++.++++.|++. ..+.|++-.. .|+. .+ .+..+. .......+|.+++ +++|++. +. .
T Consensus 37 ~~~~v~~~~~~~~~~~G-~~g~i~~s~D-gG~t----W~---~~~~~~~~~~~~~~~i~~~~--~~~~~~g-~~-----g 99 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLVG-VNATLMETRD-GGQT----WE---PRTLVLDHSDYRFNSVSFQG--NEGWIVG-EP-----P 99 (327)
T ss_dssp CEEEEEESSSSCEEEEE-TTTEEEEESS-TTSS----CE---ECCCCCSCCCCEEEEEEEET--TEEEEEE-ET-----T
T ss_pred cEEEEEECCCCcEEEEc-CCCeEEEeCC-CCCC----Ce---ECCCCCCCCCccEEEEEecC--CeEEEEE-CC-----C
Confidence 46788888777777755 4677888753 3431 11 111111 0112357888884 7888863 22 2
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
.|++ ..++|+.......... . ...+..+++.+++++|++.. .+.|++-+-.|+.-.....+ ......
T Consensus 100 ~i~~-S~DgG~tW~~~~~~~~-~-~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~tW~~~~~~---------~~~~~~ 166 (327)
T 2xbg_A 100 IMLH-TTDGGQSWSQIPLDPK-L-PGSPRLIKALGNGSAEMITN-VGAIYRTKDSGKNWQALVQE---------AIGVMR 166 (327)
T ss_dssp EEEE-ESSTTSSCEECCCCTT-C-SSCEEEEEEEETTEEEEEET-TCCEEEESSTTSSEEEEECS---------CCCCEE
T ss_pred eEEE-ECCCCCCceECccccC-C-CCCeEEEEEECCCCEEEEeC-CccEEEEcCCCCCCEEeecC---------CCcceE
Confidence 4655 4455543222221100 0 12356788777888888764 56788765555433222111 011356
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
++++++++.+|+.. ..+.+++-+-.+++ ..+.+.... -.....+++++++++|++..
T Consensus 167 ~~~~~~~~~~~~~g-~~G~~~~S~d~gG~-tW~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 223 (327)
T 2xbg_A 167 NLNRSPSGEYVAVS-SRGSFYSTWEPGQT-AWEPHNRTT---SRRLHNMGFTPDGRLWMIVN 223 (327)
T ss_dssp EEEECTTSCEEEEE-TTSSEEEEECTTCS-SCEEEECCS---SSCEEEEEECTTSCEEEEET
T ss_pred EEEEcCCCcEEEEE-CCCcEEEEeCCCCC-ceeECCCCC---CCccceeEECCCCCEEEEeC
Confidence 78999888777655 35667776543222 444443221 12356788888999998865
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.68 E-value=1 Score=39.62 Aligned_cols=211 Identities=14% Similarity=0.055 Sum_probs=108.2
Q ss_pred CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEec-----CCCC-ccceEEEEECCCCeEEE
Q 039428 69 DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD-----VLGN-KYSALAAYDLSTWKRLF 142 (335)
Q Consensus 69 ~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D-----~~~~-~~~~v~~~d~~~~~~~~ 142 (335)
...++.+|+.+.++ . ....+......-+++++. ++.||+...- .... ..+.+++||+.+++-..
T Consensus 12 G~~~~~yd~~~~~W-----~---~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 12 EEGAVAYDPAANEC-----Y---CASLSSQVPKNHVSLVTK--ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp TTEEEEEETTTTEE-----E---EEECCCCSCSSEEEEECT--TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred CCceEEECCCCCeE-----e---cCCCCCCCCccceEEEEE--CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 36899999654431 1 112221111223444443 7889987541 1111 11348999999886543
Q ss_pred EeecCCCccCCCCCCceeECCCCcEEEEeC--------CCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEcc
Q 039428 143 LTQLSGKSEEKSTADDIAVDAEGNAYVTDV--------VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHP 214 (335)
Q Consensus 143 ~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~--------~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~ 214 (335)
..+.+.+ ... ..+++ -++.+||... ....++++|+....-+.+.. +. ....-...+. -
T Consensus 82 ~~~~p~~---r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p------~~r~~~~~~~-~ 147 (315)
T 4asc_A 82 MPPLPSP---RCL-FGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP--LP------YVVYGHTVLS-H 147 (315)
T ss_dssp CCCBSSC---EES-CEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC--CS------SCCBSCEEEE-E
T ss_pred CCCCCcc---hhc-eeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC--CC------CcccceeEEE-E
Confidence 3222111 111 22333 2678999743 13679999998654332211 11 1122334444 3
Q ss_pred CCeEEEEECC------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC-----CCeEEEEEcCCC
Q 039428 215 DGFLIVIHMC------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP-----YPSARLVESSDG 283 (335)
Q Consensus 215 dg~Lyvad~~------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~-----~~~~~v~~~~~~ 283 (335)
++.||+.-.. .+.++++|+... ..+.+...... .. -..+++. ++++|+.+.. .+.+.+++...+
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~-r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTA-RS-LFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSC-CB-SCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCc-hh-ceEEEEE-CCEEEEEeccCCCCccceEEEEECCCC
Confidence 7789887543 357999999887 44444311100 01 1233333 5789998431 124666766555
Q ss_pred -cEEEEEeeeecCCCCCcceEEEEeCCeEEE
Q 039428 284 -WETASVVAKFNGPTHRVATAATVKDGRVYL 313 (335)
Q Consensus 284 -~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV 313 (335)
|... .....|. .-.+++.-+++|||
T Consensus 223 ~W~~~---~~~p~~r--~~~~~~~~~~~l~v 248 (315)
T 4asc_A 223 KWAPF---EAFPQER--SSLSLVSLVGTLYA 248 (315)
T ss_dssp EEEEE---CCCSSCC--BSCEEEEETTEEEE
T ss_pred eEEEC---CCCCCcc--cceeEEEECCEEEE
Confidence 6543 2222222 22345556889998
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.65 E-value=1 Score=39.31 Aligned_cols=197 Identities=14% Similarity=0.111 Sum_probs=106.1
Q ss_pred CCCEEEEEec-----CCeEEEEECCCCCCCcceeeeeEEeecCCcC-CCCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 59 VGRRFLVSFL-----DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV-GNATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 59 ~g~~~~~~~~-----~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~-~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
++.+|++... .+.++++|+.+.+ |...+.+. ....+++++. ++.||+...-......+.+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~----------W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 128 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQ----------WTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEA 128 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTE----------EEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCc----------eeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEE
Confidence 5566666532 2569999964333 22222221 1233566665 688999743222222246899
Q ss_pred EECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-------CCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 133 YDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-------SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-------~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
||+.+++-....+.+.+ ... ..+++ -++++|+.... ...++++|+....-..+.. +. ...
T Consensus 129 ~d~~~~~W~~~~~~p~~---r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~--~p------~~r 195 (302)
T 2xn4_A 129 YNIKSNEWFHVAPMNTR---RSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE--MS------TRR 195 (302)
T ss_dssp EETTTTEEEEECCCSSC---CBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECC--CS------SCC
T ss_pred EeCCCCeEeecCCCCCc---ccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCC--Cc------ccc
Confidence 99998866544333211 111 22332 36789997432 4579999998654433221 11 111
Q ss_pred ccCeEEEccCCeEEEEECC-----CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC-----CCeE
Q 039428 206 GLNGIVYHPDGFLIVIHMC-----SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP-----YPSA 275 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~-----~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~-----~~~~ 275 (335)
.-.+++.. ++.||+.-.. .+.++++|+... ....+...... ..-.++++. ++.+|+.+.. .+.+
T Consensus 196 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~--r~~~~~~~~-~~~i~v~GG~~~~~~~~~v 269 (302)
T 2xn4_A 196 SGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTN--AWRQVADMNMC--RRNAGVCAV-NGLLYVVGGDDGSCNLASV 269 (302)
T ss_dssp BSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTT--EEEEECCCSSC--CBSCEEEEE-TTEEEEECCBCSSSBCCCE
T ss_pred ccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCC--CEeeCCCCCCc--cccCeEEEE-CCEEEEECCcCCCcccccE
Confidence 22344444 6788887432 357999999887 55555321100 112234443 6789998431 2457
Q ss_pred EEEEcCCC-cEE
Q 039428 276 RLVESSDG-WET 286 (335)
Q Consensus 276 ~v~~~~~~-~~~ 286 (335)
.+++...+ |..
T Consensus 270 ~~yd~~~~~W~~ 281 (302)
T 2xn4_A 270 EYYNPTTDKWTV 281 (302)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEcCCCCeEEE
Confidence 77776655 653
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.71 Score=42.22 Aligned_cols=162 Identities=11% Similarity=0.030 Sum_probs=82.5
Q ss_pred CCcceEEEeC-CCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCC--Ccc-------CCCCCCceeECC---CCcE
Q 039428 101 NATMGIAVDR-PRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSG--KSE-------EKSTADDIAVDA---EGNA 167 (335)
Q Consensus 101 ~~p~Gi~~d~-~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~-------~~~~p~~~~vd~---~G~l 167 (335)
.....|++|+ +.++||++... ++....|++.+- .++......... +.. .......+++|+ .+++
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~--g~~g~gl~~s~D-~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAART--GHLGPTVFRSDD-GGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC----CCEEEEEESS-TTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CceEEEEECCCCCCeEEEEecC--CCCCccEEEeCC-CCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 4578999996 35789997432 111024777653 332211111100 000 001233578886 5789
Q ss_pred EEEeCCCCeEEEEccCCcEEEEecCCccccccc----------cccccccCeEEEccC--CeEEEEECCCCEEEEEeCCC
Q 039428 168 YVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEW----------YKNVFGLNGIVYHPD--GFLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 168 yV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~----------~~~~~~p~Gia~~~d--g~Lyvad~~~~~v~~~d~~~ 235 (335)
|+... .+.|++.+..|+.-+.+.. ....|.. .........|+++|. +.||++... +.|++.+-.+
T Consensus 132 ~~g~~-~ggl~~S~DgG~tW~~~~~-~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~-ggl~~s~DgG 208 (394)
T 3b7f_A 132 YAGTS-PQGLFRSTDHGASWEPVAG-FNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS-GGVFESTDAG 208 (394)
T ss_dssp EEEEE-TTEEEEESSTTSBCEECHH-HHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET-BEEEEESSTT
T ss_pred EEEec-CCcEEEEcCCCCCeEECcC-ccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC-CCEEEECCCC
Confidence 98643 4689999877754332210 0000000 001122457899873 489988643 4588876554
Q ss_pred CceeEEEEeccCC-cCC--------CCCCeEEEcCC--CcEEEEec
Q 039428 236 EEEEVKLIELRGG-SSL--------SLGDGLALLSP--TKLVVAGN 270 (335)
Q Consensus 236 ~~~~~~~~~~~g~-~~~--------~~pdGia~d~~--g~l~va~~ 270 (335)
. ..+.+..... ..+ .....|+++++ +.+|++..
T Consensus 209 ~--tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~ 252 (394)
T 3b7f_A 209 T--DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH 252 (394)
T ss_dssp S--SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET
T ss_pred C--CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC
Confidence 4 4444421100 001 11346788876 78999865
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.53 E-value=1.1 Score=39.18 Aligned_cols=197 Identities=9% Similarity=0.039 Sum_probs=105.4
Q ss_pred CCCEEEEEec---------CCeEEEEECCCCCCCcceeeeeEEeecCCcC-CCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 59 VGRRFLVSFL---------DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV-GNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 59 ~g~~~~~~~~---------~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~-~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
++.+|++... .+.++++|+.+.+ |...+.+. ...-.++++. ++.||+...-......+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~----------W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 137 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ----------WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHN 137 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTE----------EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECC
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCe----------EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccc
Confidence 5667776522 2579999964333 32222221 1233455554 68899963211111124
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-----CCeEEEEccCCcEEEEecCCcccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-----SSKIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-----~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
.+.+||+.+++-....+.+.+ ... ..+++. ++.+|+.... ...++++|+....-..+.. +. .
T Consensus 138 ~~~~yd~~~~~W~~~~~~p~~---r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p------~ 204 (308)
T 1zgk_A 138 SVERYEPERDEWHLVAPMLTR---RIG-VGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA--MN------T 204 (308)
T ss_dssp CEEEEETTTTEEEECCCCSSC---CBS-CEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC--CS------S
T ss_pred cEEEECCCCCeEeECCCCCcc---ccc-eEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC--CC------C
Confidence 599999998865533332211 112 223332 6789997432 4679999998665443221 11 1
Q ss_pred ccccCeEEEccCCeEEEEECC-----CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec-----CCC
Q 039428 204 VFGLNGIVYHPDGFLIVIHMC-----SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN-----PYP 273 (335)
Q Consensus 204 ~~~p~Gia~~~dg~Lyvad~~-----~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~-----~~~ 273 (335)
...-.++++. ++.||+.-.. .+.++++|+... ....+.... . ...-.++++. ++.+|+.+. ..+
T Consensus 205 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p-~-~r~~~~~~~~-~~~i~v~GG~~~~~~~~ 278 (308)
T 1zgk_A 205 IRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETE--TWTFVAPMK-H-RRSALGITVH-QGRIYVLGGYDGHTFLD 278 (308)
T ss_dssp CCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT--EEEECCCCS-S-CCBSCEEEEE-TTEEEEECCBCSSCBCC
T ss_pred ccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCC--cEEECCCCC-C-CccceEEEEE-CCEEEEEcCcCCCcccc
Confidence 1123344444 7788887533 367999999987 454443111 0 0112244443 578999843 124
Q ss_pred eEEEEEcCCC-cEE
Q 039428 274 SARLVESSDG-WET 286 (335)
Q Consensus 274 ~~~v~~~~~~-~~~ 286 (335)
.+.+++...+ |..
T Consensus 279 ~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 279 SVECYDPDTDTWSE 292 (308)
T ss_dssp EEEEEETTTTEEEE
T ss_pred eEEEEcCCCCEEee
Confidence 5777777655 764
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.029 Score=54.15 Aligned_cols=116 Identities=10% Similarity=0.062 Sum_probs=75.5
Q ss_pred CCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCCcccc----ccccccccccCeEEEccCCeEEEEECCCCE
Q 039428 153 KSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTA----KEWYKNVFGLNGIVYHPDGFLIVIHMCSGN 227 (335)
Q Consensus 153 ~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~----~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~ 227 (335)
...|.|+-++|||+ +++++....++.++|.+. ....+.+..+.. -...+.+.+|--.+||++|+.|.+-.-..+
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k-~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDK-LPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG-HHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTE
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeeh-hhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecce
Confidence 57899999999996 888888899999888652 111111100000 001234568999999999999999999999
Q ss_pred EEEEeCCCC-------c--eeEEEEeccC--CcCCCCCCeEEEcCCCcEEEEec
Q 039428 228 LFKIDIRKE-------E--EEVKLIELRG--GSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 228 v~~~d~~~~-------~--~~~~~~~~~g--~~~~~~pdGia~d~~g~l~va~~ 270 (335)
|.+.+++.. + ..+..+++.= ++ +..+.|=+.+++|+++++-+
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH-~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGH-LHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE-EEETTTTSTTCCSCEEEEEE
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccCCcc-cccCCCccCCCCccEEEEec
Confidence 999887642 1 1444454311 01 12345556678898888843
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=2 Score=42.76 Aligned_cols=196 Identities=10% Similarity=-0.044 Sum_probs=100.4
Q ss_pred eeeEEcC-CCCEEEEEe-c-----CCeEEEEECCCCCCCcceeeeeEEeecCCcC-CCCcceEEEeCCCCeEEEEEecCC
Q 039428 52 ETAKWDD-VGRRFLVSF-L-----DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV-GNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 52 egia~d~-~g~~~~~~~-~-----~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~-~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
.+.+... ++.+|+++. . .+.++++|+.+.+ |...+.+. ...-+..++-. ++.|||..+ ..
T Consensus 443 hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~----------W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG-~~ 510 (695)
T 2zwa_A 443 HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTRE----------WSMIKSLSHTRFRHSACSLP-DGNVLILGG-VT 510 (695)
T ss_dssp CEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTE----------EEECCCCSBCCBSCEEEECT-TSCEEEECC-BC
T ss_pred eEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCc----------EEECCCCCCCcccceEEEEc-CCEEEEECC-CC
Confidence 3444444 677777763 2 2468999864333 32222221 12335555532 688999632 11
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCC-------CCeEEEEccCCcE------EEE
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVV-------SSKIWKVGVEGQL------LSI 189 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~-------~~~I~~~d~~g~~------~~~ 189 (335)
.. ..+.+||+.++.-...........+......++++.+ |.+||.... .+.++++|+.... -..
T Consensus 511 ~~--~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~ 588 (695)
T 2zwa_A 511 EG--PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIK 588 (695)
T ss_dssp SS--CSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEE
T ss_pred CC--CCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEE
Confidence 11 1599999998865432211000111222233555665 889998643 3679999987654 121
Q ss_pred ecCCccccccccccccccCeEEEccCCeEEEEEC--------CCCEEEEEeCCCCceeEEEEeccCCc-----CCCCCCe
Q 039428 190 IRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHM--------CSGNLFKIDIRKEEEEVKLIELRGGS-----SLSLGDG 256 (335)
Q Consensus 190 ~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~--------~~~~v~~~d~~~~~~~~~~~~~~g~~-----~~~~pdG 256 (335)
+.. .| +....-.+++...++.||+.-. ..+.++++|+... ....+.++... +...-.+
T Consensus 589 ~~~----~p---~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~--~W~~~~~p~~~~~~~~p~~~gh~ 659 (695)
T 2zwa_A 589 KLQ----HP---LFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE--TLTSIPISRRIWEDHSLMLAGFS 659 (695)
T ss_dssp EEE----CG---GGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT--EEEECCCCHHHHHHSCCCCSSCE
T ss_pred cCC----CC---CCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC--eEEEeeccccccCCCCccceeee
Confidence 111 00 0112234555554588888643 2467999999987 55543322100 0111134
Q ss_pred EEEcCCCcEEEEec
Q 039428 257 LALLSPTKLVVAGN 270 (335)
Q Consensus 257 ia~d~~g~l~va~~ 270 (335)
++...+|.+||.+.
T Consensus 660 ~~~~~~g~i~v~GG 673 (695)
T 2zwa_A 660 LVSTSMGTIHIIGG 673 (695)
T ss_dssp EECC---CEEEECC
T ss_pred EEEeCCCEEEEEeC
Confidence 55555568888854
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.025 Score=51.89 Aligned_cols=140 Identities=16% Similarity=0.178 Sum_probs=63.1
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEe
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSII 190 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~ 190 (335)
++.+|+...| +.|+.+|.++|+.++.... .+ .....+-.+|++|++.+..+.|+.+|.+ |+....+
T Consensus 9 ~~~v~~gs~d------g~v~a~d~~tG~~~W~~~~-~~------~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 9 ETLLFVSTLD------GSLHAVSKRTGSIKWTLKE-DP------VLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL 75 (369)
T ss_dssp TTEEEEEETT------SEEEEEETTTCCEEEEEEC-CC------SCCCC-----CCEEECTTTCCEEEC-----CCSEEC
T ss_pred CCEEEEEcCC------CEEEEEECCCCCEEEEecC-CC------ceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee
Confidence 6899996443 3599999999998876654 11 1112233567788887888999999984 5543322
Q ss_pred cCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc-CCCcEEEEe
Q 039428 191 RSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL-SPTKLVVAG 269 (335)
Q Consensus 191 ~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d-~~g~l~va~ 269 (335)
. +..+. .. ....+++.++.||++. .+++|+.+|+..++ ....+...+ ..... .++.+|++.
T Consensus 76 ~---~~~~~----~~-~~sp~~~~~~~v~~g~-~dg~v~a~D~~tG~-~~w~~~~~~--------~~~~~p~~~~v~~~~ 137 (369)
T 2hz6_A 76 P---FTIPE----LV-QASPCRSSDGILYMGK-KQDIWYVIDLLTGE-KQQTLSSAF--------ADSLSPSTSLLYLGR 137 (369)
T ss_dssp S---CCHHH----HH-TTCSCC-----CCCCE-EEEEEEEECCC-------------------------------EEEEE
T ss_pred e---ccCcc----cc-ccCceEecCCEEEEEe-CCCEEEEEECCCCc-EEEEecCCC--------cccccccCCEEEEEe
Confidence 1 11110 00 0111222355777654 45789999988763 332332211 11112 235677764
Q ss_pred cCCCeEEEEEcCCC
Q 039428 270 NPYPSARLVESSDG 283 (335)
Q Consensus 270 ~~~~~~~v~~~~~~ 283 (335)
.. +.+..++...+
T Consensus 138 ~d-g~v~a~d~~tG 150 (369)
T 2hz6_A 138 TE-YTITMYDTKTR 150 (369)
T ss_dssp EE-EEEECCCSSSS
T ss_pred cC-CEEEEEECCCC
Confidence 31 34555655444
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=94.42 E-value=2.9 Score=38.09 Aligned_cols=201 Identities=11% Similarity=0.043 Sum_probs=100.5
Q ss_pred cceeeeEEcC--CCCEEEEEecCC----eEEEEECCCCCCCcceeeeeEEee---cCCcC-------CCCcceEEEeCC-
Q 039428 49 FLCETAKWDD--VGRRFLVSFLDG----GVGQVLVPDEYSPGTVLEEVKLVK---EDDVV-------GNATMGIAVDRP- 111 (335)
Q Consensus 49 ~~pegia~d~--~g~~~~~~~~~~----~I~~~d~~~g~~~~~v~~~~~~~~---~~~~~-------~~~p~Gi~~d~~- 111 (335)
....++++|+ .+.+|+... .+ .|++.++ .++. .+. ... .+... ......|++++.
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~-~g~~g~gl~~s~D-~G~t----W~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 126 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAAR-TGHLGPTVFRSDD-GGGN----WTE--ATRPPAFNKAPEGETGRVVDHVFWLTPGHAS 126 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEE-C--CCEEEEEESS-TTSC----CEE--CSBCCCCCCCC----CCCCCEEEEEEECCTT
T ss_pred CceEEEEECCCCCCeEEEEec-CCCCCccEEEeCC-CCCC----ceE--CCccccCCCcccccccccccceeEEEeCCCC
Confidence 3467899998 666665553 44 7888864 3431 111 110 11110 012446888853
Q ss_pred -CCeEEEEEecCCCCccceEEEEECCCCeEEEEeecC-CCc------------cCCCCCCceeECC--CCcEEEEeCCCC
Q 039428 112 -RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLS-GKS------------EEKSTADDIAVDA--EGNAYVTDVVSS 175 (335)
Q Consensus 112 -~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~------------~~~~~p~~~~vd~--~G~lyV~d~~~~ 175 (335)
.++||+.... ..|++.+-.+..-....... .+. ........|++|+ .+++|++... +
T Consensus 127 ~~~~l~~g~~~------ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~-g 199 (394)
T 3b7f_A 127 EPGTWYAGTSP------QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS-G 199 (394)
T ss_dssp STTCEEEEEET------TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET-B
T ss_pred CCCEEEEEecC------CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC-C
Confidence 5889996432 35888764333222111110 000 0012235788997 3679998543 4
Q ss_pred eEEEEccCCcEEEEecCC---ccccccccccccccCeEEEccC--CeEEEEECCCCEEEEEeCCCCceeEEEEecc-CCc
Q 039428 176 KIWKVGVEGQLLSIIRSP---LFTAKEWYKNVFGLNGIVYHPD--GFLIVIHMCSGNLFKIDIRKEEEEVKLIELR-GGS 249 (335)
Q Consensus 176 ~I~~~d~~g~~~~~~~~~---~~~~~~~~~~~~~p~Gia~~~d--g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~-g~~ 249 (335)
.|++.+-.|+.-+.+... .+..+...........|+++++ +.||++. .+.|++.+-.+. ..+.+... ...
T Consensus 200 gl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--~~gl~~s~D~G~--tW~~~~~~l~~~ 275 (394)
T 3b7f_A 200 GVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--HCGIYRMDRREG--VWKRIGDAMPRE 275 (394)
T ss_dssp EEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--TTEEEEEETTTT--EEECGGGGSCTT
T ss_pred CEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc--CCeEEEeCCCCC--cceECCCCCCCC
Confidence 688887767543322110 0000000000123567899986 6899875 345888875554 44433210 000
Q ss_pred CCCCCCeEEEcC--CCcEEEE
Q 039428 250 SLSLGDGLALLS--PTKLVVA 268 (335)
Q Consensus 250 ~~~~pdGia~d~--~g~l~va 268 (335)
.......+++++ .+.+|++
T Consensus 276 ~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 276 VGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp TCSCEEEEEECSSCTTCEEEE
T ss_pred CccceEEEEECCCCCCEEEEE
Confidence 001112467774 4689987
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.39 E-value=1.4 Score=44.29 Aligned_cols=117 Identities=9% Similarity=0.015 Sum_probs=66.7
Q ss_pred eeeeEEc-CCCCEEEEE-ecCC----eEEEEECCCC-CCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC
Q 039428 51 CETAKWD-DVGRRFLVS-FLDG----GVGQVLVPDE-YSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 51 pegia~d-~~g~~~~~~-~~~~----~I~~~d~~~g-~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
-.+++|+ |+|+.+..+ ...| +|+++|..++ +. +.. .+ +. ...+++.++++..|+.+..|..
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~----l~~--~~--~~----~~~~~~WspDg~~l~y~~~d~~ 243 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT----IAD--KV--SG----TNGEIVWGPDHTSLFYVTKDET 243 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC----CCC--CE--EE----ECSCCEECSSTTEEEEEEECTT
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe----CCc--cc--cC----ceeeEEEecCCCEEEEEEECCC
Confidence 4568999 999866555 3332 4999997655 41 110 11 11 1246778875556776544432
Q ss_pred CCccceEEEEECCCCeE--EEEeecCCCccCCCCCCceeECCCCc-EEEEe--CCCCeEEEEccCC
Q 039428 124 GNKYSALAAYDLSTWKR--LFLTQLSGKSEEKSTADDIAVDAEGN-AYVTD--VVSSKIWKVGVEG 184 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d--~~~~~I~~~d~~g 184 (335)
. ....|+++++.+++. ....... . ..+-.++.+++||+ |+++. .....|+.+|.++
T Consensus 244 ~-~~~~v~~~~lgt~~~~~~lv~~~~--~--~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 244 L-RENKVWRHVMGKLQSEDVCLYEEH--N--PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp C-CEEEEEEEETTSCGGGCEEEEECC--C--TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred C-CCCEEEEEECCCCchhcEEEEecC--C--CceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 2 224699999877631 1111111 1 12334678899996 44443 2356899998875
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.35 E-value=2.3 Score=36.79 Aligned_cols=199 Identities=12% Similarity=0.072 Sum_probs=105.6
Q ss_pred CCCEEEEEec-----CCeEEEEECCCCC---CCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 59 VGRRFLVSFL-----DGGVGQVLVPDEY---SPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 59 ~g~~~~~~~~-----~~~I~~~d~~~g~---~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
++.+|++... .+.++++|+.+.. + + .....|. ....+.+++. ++.||+...-......+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W-----~--~~~~~p~--~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~ 130 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVW-----Y--SVAPMNV--RRGLAGATTL--GDMIYVSGGFDGSRRHTSM 130 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCC-----E--EECCCSS--CCBSCEEEEE--TTEEEEECCBCSSCBCCEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCee-----E--ECCCCCC--CccceeEEEE--CCEEEEEcccCCCcccceE
Confidence 4566666632 2579999965443 2 1 1211121 1233455555 6889996322111112569
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC-----CCCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-----VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-----~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
.+||+.+++-....+.+.+ .... .+++ -++++|+... ....++++|+....-..+.. +. ...
T Consensus 131 ~~~d~~~~~W~~~~~~p~~---r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~p------~~r 197 (301)
T 2vpj_A 131 ERYDPNIDQWSMLGDMQTA---REGA-GLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP--MA------TKR 197 (301)
T ss_dssp EEEETTTTEEEEEEECSSC---CBSC-EEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECC--CS------SCC
T ss_pred EEEcCCCCeEEECCCCCCC---cccc-eEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCC--CC------ccc
Confidence 9999998876544333211 1222 2222 3678999743 24679999998655443321 11 111
Q ss_pred ccCeEEEccCCeEEEEECC-----CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCC-----CeE
Q 039428 206 GLNGIVYHPDGFLIVIHMC-----SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPY-----PSA 275 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~-----~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~-----~~~ 275 (335)
.-..++.. ++.||+.-.. .+.++++|+... ....+...... .. -..+++. ++.+|+.+... +.+
T Consensus 198 ~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~-r~-~~~~~~~-~~~i~v~GG~~~~~~~~~v 271 (301)
T 2vpj_A 198 SGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTD--SWTTVTSMTTP-RC-YVGATVL-RGRLYAIAGYDGNSLLSSI 271 (301)
T ss_dssp BSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT--EEEEECCCSSC-CB-SCEEEEE-TTEEEEECCBCSSSBEEEE
T ss_pred ccceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCC--cEEECCCCCCc-cc-ceeEEEE-CCEEEEEcCcCCCcccccE
Confidence 12334443 6788886433 467999999887 55555321101 11 1234443 57899984311 345
Q ss_pred EEEEcCCC-cEEE
Q 039428 276 RLVESSDG-WETA 287 (335)
Q Consensus 276 ~v~~~~~~-~~~~ 287 (335)
.+++...+ |...
T Consensus 272 ~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 272 ECYDPIIDSWEVV 284 (301)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEcCCCCeEEEc
Confidence 66666555 7643
|
| >3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP} | Back alignment and structure |
|---|
Probab=92.36 E-value=10 Score=38.11 Aligned_cols=217 Identities=13% Similarity=0.059 Sum_probs=109.2
Q ss_pred ceeeeEEcCCC-CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCC-------c--CCCCcceEEEeCC-CCeEEEE
Q 039428 50 LCETAKWDDVG-RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDD-------V--VGNATMGIAVDRP-RNRLLVA 118 (335)
Q Consensus 50 ~pegia~d~~g-~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~-------~--~~~~p~Gi~~d~~-~g~l~v~ 118 (335)
...+|+++|.+ +++|+....+.|++-+. .|+. .+ ++. .+. . .......|++|+. .+++|++
T Consensus 22 ~i~~i~~~p~~~~~~y~~~~~ggv~~S~D-gG~t----W~--~~~-~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~ 93 (763)
T 3a0f_A 22 FISGLVAHPTEKDLIYARTDIGGTYRWNA-AKWE----WE--PIT-DFIINNALAGNGANLLGTESIALDPHNPDRLYLA 93 (763)
T ss_dssp CEEEEEECSSSTTCEEEEESSSCEEEEET-TTTE----EE--ESC-TTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEE
T ss_pred ceeEEEeCCCCCCEEEEEeccCcEEEECC-CCCC----ee--ECc-cCccccccCCCcccccceeEEEECCCCCCEEEEE
Confidence 56789999986 67777766788999874 4541 11 111 110 0 1123578888873 4789986
Q ss_pred EecCC--CCccceEEEEECCCCeEEEEeecCCCc----cCCCCCCceeECCC--CcEEEEeCCCCeEEEEccCCcEEEEe
Q 039428 119 FTDVL--GNKYSALAAYDLSTWKRLFLTQLSGKS----EEKSTADDIAVDAE--GNAYVTDVVSSKIWKVGVEGQLLSII 190 (335)
Q Consensus 119 ~~D~~--~~~~~~v~~~d~~~~~~~~~~~~~~~~----~~~~~p~~~~vd~~--G~lyV~d~~~~~I~~~d~~g~~~~~~ 190 (335)
..+.. +.. ..|++= .+.|+.-.....+... .+......++++|. +.+|+... .+.|++=+-.|+.-+.+
T Consensus 94 ~g~~~~~~~~-~~i~~S-~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~-~~~l~~S~DgG~TW~~~ 170 (763)
T 3a0f_A 94 QGDYVQWDPW-AAFLVS-DDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSR-TQGLWRSTDRAQTWSRM 170 (763)
T ss_dssp ECSCTTTCSC-CEEEEE-SSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECS-SSCEEEESSTTSSCEEC
T ss_pred ecccccCCCC-ceEEEE-CCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeC-CCcEEEECCCCcCcccc
Confidence 43211 111 345543 3445322112221100 00011146899875 67998743 45777765555433221
Q ss_pred cCCccccccccccccccCeEEEccCC--eEEEEECCCCEEEEEeCCCCceeEEEEeccCCc------------------C
Q 039428 191 RSPLFTAKEWYKNVFGLNGIVYHPDG--FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGS------------------S 250 (335)
Q Consensus 191 ~~~~~~~~~~~~~~~~p~Gia~~~dg--~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~------------------~ 250 (335)
. .+. ...........|+++|.. .+|++....+.|++-+ ++++ ..+.+...... .
T Consensus 171 ~--~~~--~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g~v~~S~-DgG~-tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 244 (763)
T 3a0f_A 171 N--QLP--DSSTYGIGIISVIFDPKNVGTAYVASHAVGGLWVTW-DGGA-NWSQVGGQPTQWSDWTKSIVAASGTAIQSS 244 (763)
T ss_dssp T--TSC--CCSCTTTCEEEEEECSSSTTCEEEEESSTTCEEEES-SSSS-SCEECTTCCCSCCHHHHHHHHHHCCCCSSS
T ss_pred c--cCc--ccCCCccceEEEEECCCCCCEEEEEEeCCCeEEEEC-CCCC-CccccCCCccccccccccccccccccccCC
Confidence 1 011 000011235577888753 7998876554566543 3332 33333210000 0
Q ss_pred CCCCCeEEEcCCCcEEEEec------CCCeEEEEEcCCC
Q 039428 251 LSLGDGLALLSPTKLVVAGN------PYPSARLVESSDG 283 (335)
Q Consensus 251 ~~~pdGia~d~~g~l~va~~------~~~~~~v~~~~~~ 283 (335)
...+.-+++.+++.||++-. +.....++++.++
T Consensus 245 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~g~v~rS~D~ 283 (763)
T 3a0f_A 245 GPLPIKIALGKNGRLYITYSDAPGPWGVLYGEVWSYDPT 283 (763)
T ss_dssp SCEEEEEEECTTSCEEEEEESSCSSSCCCCEEEEEEETT
T ss_pred CCcceeEEECCCCcEEEEeccCCCCCCCcceeEEEEeCC
Confidence 11245567778889999831 1122456666555
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.30 E-value=0.78 Score=41.56 Aligned_cols=68 Identities=10% Similarity=0.056 Sum_probs=41.8
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEe-CCCCeEEEEccCCcE
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTD-VVSSKIWKVGVEGQL 186 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d-~~~~~I~~~d~~g~~ 186 (335)
++.+||.+.| +.|+.+|.++|+..+......... .-...+-+...+|.+|+.+ +..|+|+.++++...
T Consensus 10 ~~~V~v~t~d------G~l~Ald~~tG~~~W~~~~~~~~p-~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~ 78 (339)
T 2be1_A 10 SDILIAADVE------GGLHAVDRRNGHIIWSIEPENFQP-LIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL 78 (339)
T ss_dssp EEEEEEEETT------SCEEEEETTTTEEEEEECGGGSCC-SEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE
T ss_pred CCEEEEEeCC------CeEEEEECCCCcEEEEecCCccCC-cEEecCCccccCCcEEEEEECCCCEEEEEECCCCc
Confidence 4788886544 349999999999998776531001 1000001111356788877 578999999976543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=91.37 E-value=6.8 Score=34.16 Aligned_cols=179 Identities=14% Similarity=0.128 Sum_probs=93.8
Q ss_pred CCeEEEEEecCC---CC---ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-------CCeEE
Q 039428 112 RNRLLVAFTDVL---GN---KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-------SSKIW 178 (335)
Q Consensus 112 ~g~l~v~~~D~~---~~---~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-------~~~I~ 178 (335)
++.||+..+-.. +. ....+++||+.+++-....+.+. ...-..+++ -++.+||.... ...++
T Consensus 56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~----~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPS----ARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSS----CBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEE
T ss_pred CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCc----cccccceEE-ECCEEEEEcCccCCCCcccceEE
Confidence 788999743110 10 01238999999886553322211 111122333 36789997432 24689
Q ss_pred EEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECC------CCEEEEEeCCCCceeEEEEeccCCcCCC
Q 039428 179 KVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC------SGNLFKIDIRKEEEEVKLIELRGGSSLS 252 (335)
Q Consensus 179 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~------~~~v~~~d~~~~~~~~~~~~~~g~~~~~ 252 (335)
++|+....-..+.. +. ....-.+.+. .++.||+.-.. .+.++++|+... ....+.... . ..
T Consensus 131 ~yd~~~~~W~~~~~--~p------~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p-~-~r 197 (318)
T 2woz_A 131 CYDPVAAKWSEVKN--LP------IKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMK-T-PR 197 (318)
T ss_dssp EEETTTTEEEEECC--CS------SCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTT--EEEEECCCS-S-CC
T ss_pred EEeCCCCCEeECCC--CC------CcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCC-C-Cc
Confidence 99988654432221 11 1112334444 47789886431 356999999987 555553211 1 01
Q ss_pred CCCeEEEcCCCcEEEEecC-----CCeEEEEEcCCC-cEEEEEeeeecCCCCCcceEEEEeCCeEEEE
Q 039428 253 LGDGLALLSPTKLVVAGNP-----YPSARLVESSDG-WETASVVAKFNGPTHRVATAATVKDGRVYLS 314 (335)
Q Consensus 253 ~pdGia~d~~g~l~va~~~-----~~~~~v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~ 314 (335)
.-.++++. ++.+|+.+.. .+.+.+++...+ |... .....+. .-.+++.-+++|||.
T Consensus 198 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r--~~~~~~~~~~~i~v~ 259 (318)
T 2woz_A 198 SMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM---TEFPQER--SSISLVSLAGSLYAI 259 (318)
T ss_dssp BSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEEC---CCCSSCC--BSCEEEEETTEEEEE
T ss_pred ccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEEC---CCCCCcc--cceEEEEECCEEEEE
Confidence 11244443 5789998431 134566666544 6542 2222222 223455568999984
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.09 E-value=7.8 Score=34.33 Aligned_cols=180 Identities=13% Similarity=0.097 Sum_probs=92.3
Q ss_pred CCeEEEEEecCCCCccceEEEEECCC--CeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC----------CCeEEE
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLST--WKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV----------SSKIWK 179 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~----------~~~I~~ 179 (335)
++.|||..+.. + +.+++||+.+ .+-....+.+ ..+.... .+++ -++.+||.... ...+++
T Consensus 19 ~~~iyv~GG~~-~---~~~~~~d~~~~~~~W~~~~~~p--~~~R~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~ 90 (357)
T 2uvk_A 19 NDTVYIGLGSA-G---TAWYKLDTQAKDKKWTALAAFP--GGPRDQA-TSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHK 90 (357)
T ss_dssp TTEEEEECGGG-T---TCEEEEETTSSSCCEEECCCCT--TCCCBSC-EEEE-ETTEEEEECCEEECTTSCEEECCCEEE
T ss_pred CCEEEEEeCcC-C---CeEEEEccccCCCCeeECCCCC--CCcCccc-eEEE-ECCEEEEEcCCCCCCCccceeeccEEE
Confidence 68999963221 1 3599999974 3333222221 0111122 2232 25789996432 357999
Q ss_pred EccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECC-----------------------------------
Q 039428 180 VGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC----------------------------------- 224 (335)
Q Consensus 180 ~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~----------------------------------- 224 (335)
+|+....-+.+.. .. | ....-...+. -++.||+.-..
T Consensus 91 yd~~~~~W~~~~~--~~-p----~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (357)
T 2uvk_A 91 YNPKTNSWVKLMS--HA-P----MGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAE 162 (357)
T ss_dssp EETTTTEEEECSC--CC-S----SCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGG
T ss_pred EeCCCCcEEECCC--CC-C----cccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccccc
Confidence 9998655432211 11 1 1111223344 57899987643
Q ss_pred ----CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC------CCeEEEEEc--CCC-cEEEEEee
Q 039428 225 ----SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP------YPSARLVES--SDG-WETASVVA 291 (335)
Q Consensus 225 ----~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~------~~~~~v~~~--~~~-~~~~~~~~ 291 (335)
.+.++++|+... ..+.+...... -..-..+++. ++.+||.+.. .+.+.+++. ..+ |... .
T Consensus 163 ~~~~~~~v~~yd~~~~--~W~~~~~~p~~-~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~---~ 235 (357)
T 2uvk_A 163 DYFFNKFLLSFDPSTQ--QWSYAGESPWY-GTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL---A 235 (357)
T ss_dssp GGCCCCEEEEEETTTT--EEEEEEECSSC-CCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEEC---C
T ss_pred ccCCcccEEEEeCCCC--cEEECCCCCCC-CcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEec---C
Confidence 368999999987 55544321100 0111345544 5789988431 345666654 222 5432 2
Q ss_pred eecCCCCCcceEEEEeCCeEEEE
Q 039428 292 KFNGPTHRVATAATVKDGRVYLS 314 (335)
Q Consensus 292 ~~~~p~~~~Pt~va~~~g~lyV~ 314 (335)
....|....-.++++.+++|||.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~iyv~ 258 (357)
T 2uvk_A 236 PVSSPDGVAGGFAGISNDSLIFA 258 (357)
T ss_dssp CSSTTTCCBSCEEEEETTEEEEE
T ss_pred CCCCCcccccceEEEECCEEEEE
Confidence 22223323323455668999983
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=88.23 E-value=15 Score=36.64 Aligned_cols=157 Identities=13% Similarity=0.128 Sum_probs=77.4
Q ss_pred eeeEEcCCCCEEEEE-ecC----CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 52 ETAKWDDVGRRFLVS-FLD----GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~~----~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
.+++|+++|+.++.. ... .+|++++..++.. +...+...+.. ....++.+++++..|++...+. .
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~-----~~~lv~~~~~~--~~~~~~~~SpDg~~l~~~~~~~-~-- 293 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQS-----EDVCLYEEHNP--LFSAFMYKAADTNTLCIGSQSP-E-- 293 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGG-----GCEEEEECCCT--TCEEEEEECTTSSEEEEEEECS-S--
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCch-----hcEEEEecCCC--ceEEEEEECCCCCEEEEEecCC-C--
Confidence 378999999755555 322 3699998643321 11112222211 1234677887444555543222 1
Q ss_pred cceEEEEECCCC--eE--EEEeecCCCccCCCCCCceeECCCCcEEE-EeC---CCCeEEEEccCC--cEEE-EecCCcc
Q 039428 127 YSALAAYDLSTW--KR--LFLTQLSGKSEEKSTADDIAVDAEGNAYV-TDV---VSSKIWKVGVEG--QLLS-IIRSPLF 195 (335)
Q Consensus 127 ~~~v~~~d~~~~--~~--~~~~~~~~~~~~~~~p~~~~vd~~G~lyV-~d~---~~~~I~~~d~~g--~~~~-~~~~~~~ 195 (335)
.+.|+.+|++++ +. ...... . ...-..+.+..++.+|+ ++. .+.+|++++.++ +... ++...
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~----~-~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-- 366 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPR----E-KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-- 366 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCC----C-TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC--
T ss_pred CceEEEEECCCCCCCceeEEeecC----C-CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC--
Confidence 257999998865 22 211110 0 01111122112344555 443 356999999873 2222 22110
Q ss_pred ccccccccccccCeEEEccCCeEEEEECCCC--EEEEEeC
Q 039428 196 TAKEWYKNVFGLNGIVYHPDGFLIVIHMCSG--NLFKIDI 233 (335)
Q Consensus 196 ~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~--~v~~~d~ 233 (335)
......++.++ ++.|+++...++ +|+++++
T Consensus 367 -------~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 367 -------EDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp -------SSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred -------CCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 01123456665 447776655544 7888886
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=83.42 E-value=24 Score=32.21 Aligned_cols=177 Identities=10% Similarity=0.019 Sum_probs=94.5
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCC-----CCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEY-----SPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~-----~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
..-+++++..++++++..+ .+.+++..+.+ .+.+ .+....+..+ . +..|++| +..|+|+ .+
T Consensus 40 ~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~-~~~~~~~~lp----~-V~~l~fd--~~~L~v~-~~---- 105 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTP-LTFKWEKEIP----D-VIFVCFH--GDQVLVS-TR---- 105 (388)
T ss_dssp CBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCC-CCCSEEEECT----T-EEEEEEE--TTEEEEE-ES----
T ss_pred ccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcccccc-ccceEEeeCC----C-eeEEEEC--CCEEEEE-cC----
Confidence 4678999999998887544 55557532111 0000 0100111112 2 6788883 6888885 22
Q ss_pred ccceEEEEECCCCeEEEEe-ecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 126 KYSALAAYDLSTWKRLFLT-QLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
+.|..||..+....... ... ...+++..-+. ++.+. ..+|.|+++|.+......+ .
T Consensus 106 --~~l~v~dv~sl~~~~~~~~~~------~~v~~i~~~~p-~~av~-~~dG~L~v~dl~~~~~~~~-------------~ 162 (388)
T 1xip_A 106 --NALYSLDLEELSEFRTVTSFE------KPVFQLKNVNN-TLVIL-NSVNDLSALDLRTKSTKQL-------------A 162 (388)
T ss_dssp --SEEEEEESSSTTCEEEEEECS------SCEEEEEECSS-EEEEE-ETTSEEEEEETTTCCEEEE-------------E
T ss_pred --CcEEEEEchhhhccCccceee------cceeeEEecCC-CEEEE-ECCCCEEEEEccCCccccc-------------c
Confidence 35999998654321111 111 11223333222 24443 4557777777653322211 1
Q ss_pred cccCeEEEccCCeEEEEECCCCEEEEEeCCCCcee--EEEEeccC---C---cCCCCCCeEEEcCCCcEEEE
Q 039428 205 FGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEE--VKLIELRG---G---SSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~--~~~~~~~g---~---~~~~~pdGia~d~~g~l~va 268 (335)
.+...+|++|+| +++ -..++++..+++++.+ . ...+..+. + . -..+..+.+-+++.+.++
T Consensus 163 ~~Vs~v~WSpkG-~~v-g~~dg~i~~~~~~~~~-~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 163 QNVTSFDVTNSQ-LAV-LLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ESEEEEEECSSE-EEE-EETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEEEE
T ss_pred CCceEEEEcCCc-eEE-EEcCCcEEEEcCCCcc-ccccceecCCcccccccCC-CeeEEEEEEecCCeEEEE
Confidence 236789999999 433 3356777777887762 1 44453211 0 1 133677888888877777
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 335 | ||||
| d1v04a_ | 340 | b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO | 5e-05 | |
| d2dg1a1 | 319 | b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus | 3e-04 | |
| d1pjxa_ | 314 | b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph | 4e-04 | |
| d2p4oa1 | 302 | b.68.6.3 (A:4-305) Hypothetical protein All0351 ho | 0.002 |
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 42.0 bits (98), Expect = 5e-05
Identities = 36/279 (12%), Positives = 89/279 (31%), Gaps = 26/279 (9%)
Query: 61 RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKED-DVVGNATMGIAVDRPRNRLLVAF 119
++SF G++L+ D + E++++ D+ GI+ + +
Sbjct: 56 YPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 115
Query: 120 TDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSK--- 176
S + + ++ L + + + + +DI + Y T+
Sbjct: 116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPY 175
Query: 177 --IWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDI 233
W++ + + + + NGI PDG ++ + + + + +
Sbjct: 176 LKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEK 235
Query: 234 RKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAG----------------NPYPSARL 277
L L + + D +++ T + G R+
Sbjct: 236 HANWTLTPLRVLSFDTLV---DNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRI 292
Query: 278 VESSDGWETASVVAKFNGPTHRVATAATVKDGRVYLSHL 316
+ +VV NG + +T A V G++ + +
Sbjct: 293 QDILSEEPKVTVVYAENGTVLQGSTVAAVYKGKLLIGTV 331
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Score = 39.7 bits (91), Expect = 3e-04
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 11/66 (16%)
Query: 159 IAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGF 217
+ D +G ++ DV I+K+ E ++ S I H DG
Sbjct: 45 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANP----------AAIKIHKDGR 94
Query: 218 LIVIHM 223
L V ++
Sbjct: 95 LFVCYL 100
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Score = 39.3 bits (90), Expect = 4e-04
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 12/92 (13%)
Query: 156 ADDIAVDAEGNAYV-------TDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208
A+ D G+ Y+ + +I ++ ++ ++I P E
Sbjct: 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP-----EVNGYGGIPA 74
Query: 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEV 240
G D + + L + EE+
Sbjct: 75 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEI 106
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Score = 36.9 bits (84), Expect = 0.002
Identities = 9/75 (12%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 157 DDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG 216
+++A +G +VT+ +I + +G ++G+ + +G
Sbjct: 31 ENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVE-----------GKVSGLAFTSNG 79
Query: 217 FLIVIHMCSGNLFKI 231
L+ + ++ +
Sbjct: 80 DLVATGWNADSIPVV 94
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 335 | |||
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.96 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.95 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.95 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.93 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.92 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.9 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.9 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.86 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.81 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.77 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.76 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.75 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.68 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.67 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.66 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.63 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 99.62 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.56 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.44 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.36 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.36 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.34 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.31 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.29 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.23 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.2 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.16 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.14 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.12 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 99.05 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.03 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.01 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.0 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.93 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.92 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.89 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.86 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.84 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.83 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.83 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.8 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.69 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.67 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.63 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.61 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.58 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.58 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.56 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.55 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.55 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.41 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.38 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.33 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.32 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.31 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.28 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.28 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.19 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.19 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.11 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.09 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.82 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.71 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.7 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.47 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 97.31 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 97.29 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.29 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.23 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 96.99 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 96.87 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.86 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.77 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.74 | |
| d1tl2a_ | 235 | Tachylectin-2 {Japanese horseshoe crab (Tachypleus | 96.0 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.36 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 95.26 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.25 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.19 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 95.11 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 94.96 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 94.92 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 94.9 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.51 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.45 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 94.36 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 94.29 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.21 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 94.01 | |
| d1tl2a_ | 235 | Tachylectin-2 {Japanese horseshoe crab (Tachypleus | 93.97 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 93.68 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.62 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 93.11 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 92.49 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.33 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 92.18 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 83.35 |
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.96 E-value=4.7e-27 Score=213.47 Aligned_cols=240 Identities=18% Similarity=0.230 Sum_probs=167.1
Q ss_pred cCCCcceeeeEEcCCCCEEEEEec-------CCeEEEEECCCCCCCcceeeeeEEeecCCcC--CCCcceEEEeCCCCeE
Q 039428 45 HSPSFLCETAKWDDVGRRFLVSFL-------DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV--GNATMGIAVDRPRNRL 115 (335)
Q Consensus 45 ~~~~~~pegia~d~~g~~~~~~~~-------~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~--~~~p~Gi~~d~~~g~l 115 (335)
...-..|||++||++|++|+++.. +++|+++|+.++. .. ....+... ...|+||+++++.+++
T Consensus 14 ~~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~-----~~---~~~~~~~~~~~g~P~Gl~~~~dg~~l 85 (314)
T d1pjxa_ 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK-----KT---VICKPEVNGYGGIPAGCQCDRDANQL 85 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC-----EE---EEECCEETTEECCEEEEEECSSSSEE
T ss_pred ecCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCc-----EE---EEECCccccCCCcceeEEEeCCCCEE
Confidence 334447999999999999998732 4789999865443 11 22222211 2468999999855578
Q ss_pred EEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC---------------CCeEEEE
Q 039428 116 LVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV---------------SSKIWKV 180 (335)
Q Consensus 116 ~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~---------------~~~I~~~ 180 (335)
|+ +|.. +.+.++|++++...... ....+..+..|||+++|++|++||+|.. .++||++
T Consensus 86 ~v--ad~~----~~i~~~~~~g~~~~~~~-~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~ 158 (314)
T d1pjxa_ 86 FV--ADMR----LGLLVVQTDGTFEEIAK-KDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF 158 (314)
T ss_dssp EE--EETT----TEEEEEETTSCEEECCS-BCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred EE--EECC----CeEEEEeCCCcEEEEEe-ccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEE
Confidence 88 4543 35999999887554221 1122333678999999999999999853 4689999
Q ss_pred ccCCcEEEEecCCccccccccccccccCeEEEccCC-----eEEEEECCCCEEEEEeCCCCce--eEEEE-eccCCcCCC
Q 039428 181 GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-----FLIVIHMCSGNLFKIDIRKEEE--EVKLI-ELRGGSSLS 252 (335)
Q Consensus 181 d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-----~Lyvad~~~~~v~~~d~~~~~~--~~~~~-~~~g~~~~~ 252 (335)
+++|+...+.. ....||||++++++ +|||+++.+++|+++|++..+. ..+.+ ...+ ....
T Consensus 159 ~~dg~~~~~~~-----------~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~-~~~~ 226 (314)
T d1pjxa_ 159 TTDGQMIQVDT-----------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG-THEG 226 (314)
T ss_dssp CTTSCEEEEEE-----------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC-CSSC
T ss_pred eecCceeEeeC-----------CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccc-cccc
Confidence 99998766432 23459999999875 5999999999999999876431 22222 3333 2245
Q ss_pred CCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe--CCeEEEEec
Q 039428 253 LGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK--DGRVYLSHL 316 (335)
Q Consensus 253 ~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~~ 316 (335)
.||||++|.+|+|||++.+.+++.+++.+.+ +....+..| ...|++++|. +++|||++.
T Consensus 227 ~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g----~~~~~i~~p-~~~~t~~afg~d~~~lyVt~~ 287 (314)
T d1pjxa_ 227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGG----QPKMRIRCP-FEKPSNLHFKPQTKTIFVTEH 287 (314)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECTTCB----SCSEEEECS-SSCEEEEEECTTSSEEEEEET
T ss_pred cceeeEEecCCcEEEEEcCCCEEEEEeCCCC----EEEEEEECC-CCCEEEEEEeCCCCEEEEEEC
Confidence 6999999999999999876678887765432 222334334 3568999995 446999764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.95 E-value=4.4e-26 Score=207.39 Aligned_cols=242 Identities=16% Similarity=0.180 Sum_probs=166.6
Q ss_pred EEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 43 QYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 43 ~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
.+.......||++||++|++||++..+++|+++++ +++. ... +.. +. ...|+||++++ +|+|||+....
T Consensus 34 ~~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p-~g~~----~~~--~~~-~~--~~~p~gla~~~-dG~l~va~~~~ 102 (319)
T d2dg1a1 34 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINP-ETKE----IKR--PFV-SH--KANPAAIKIHK-DGRLFVCYLGD 102 (319)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECT-TTCC----EEE--EEE-CS--SSSEEEEEECT-TSCEEEEECTT
T ss_pred EeccCCcCcEeCEECCCCCEEEEECCCCEEEEEEC-CCCe----EEE--EEe-CC--CCCeeEEEECC-CCCEEEEecCC
Confidence 33445666799999999999999888999999985 4541 121 221 21 13789999997 89999964211
Q ss_pred CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC------CCeEEEEccCCcEEEEecCCccc
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV------SSKIWKVGVEGQLLSIIRSPLFT 196 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~------~~~I~~~d~~g~~~~~~~~~~~~ 196 (335)
. .....+..+|..++.+...... ......|||+++|++|++|++|.. .+.+++++++++....+..
T Consensus 103 ~-~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~---- 174 (319)
T d2dg1a1 103 F-KSTGGIFAATENGDNLQDIIED---LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ---- 174 (319)
T ss_dssp S-SSCCEEEEECTTSCSCEEEECS---SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE----
T ss_pred C-ccceeEEEEcCCCceeeeeccC---CCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee----
Confidence 1 1124688999888766533322 122678999999999999999865 4579999999876543211
Q ss_pred cccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeE----EEEeccCCcCCCCCCeEEEcCCCcEEEEecC
Q 039428 197 AKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEV----KLIELRGGSSLSLGDGLALLSPTKLVVAGNP 271 (335)
Q Consensus 197 ~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~----~~~~~~g~~~~~~pdGia~d~~g~l~va~~~ 271 (335)
....||||++++|+ .||++++.+++|++++++...... ..+...- .....||||++|++|+|||++++
T Consensus 175 ------~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~-~~~~~PdGl~vD~~G~l~Va~~~ 247 (319)
T d2dg1a1 175 ------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYF-TGHEGPDSCCIDSDDNLYVAMYG 247 (319)
T ss_dssp ------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEEC-CSSSEEEEEEEBTTCCEEEEEET
T ss_pred ------ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeecc-CCccceeeeeEcCCCCEEEEEcC
Confidence 23459999999999 799999999999999987542111 1111111 11356999999999999999876
Q ss_pred CCeEEEEEcCCCcEEEEEeeeecCCC-----CCcceEEEEe--CCeEEEEe
Q 039428 272 YPSARLVESSDGWETASVVAKFNGPT-----HRVATAATVK--DGRVYLSH 315 (335)
Q Consensus 272 ~~~~~v~~~~~~~~~~~~~~~~~~p~-----~~~Pt~va~~--~g~lyV~~ 315 (335)
.+++++++. +| +++.++..|. ...++++++. ..++|+++
T Consensus 248 ~g~V~~~~p-~G----~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 248 QGRVLVFNK-RG----YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp TTEEEEECT-TS----CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred CCEEEEECC-CC----cEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence 677887764 44 3444454442 3356788884 45566643
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.95 E-value=7.8e-26 Score=203.58 Aligned_cols=256 Identities=14% Similarity=0.169 Sum_probs=180.7
Q ss_pred CceeEEEcCCCcceeeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEE
Q 039428 38 ATHVYQYHSPSFLCETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLL 116 (335)
Q Consensus 38 ~~~~~~~~~~~~~pegia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~ 116 (335)
-..++.......+.||+.||++ +++||+++.+++|+++|+.+++ .. ....+. .+.+++.++ +|++|
T Consensus 7 ~~~~~~~~~~~~LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~-----~~---~~~~~~----~~~~i~~~~-dg~l~ 73 (295)
T d2ghsa1 7 FAGRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGR-----KT---VHALPF----MGSALAKIS-DSKQL 73 (295)
T ss_dssp CCCEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE-----EE---EEECSS----CEEEEEEEE-TTEEE
T ss_pred eeEEEEcCCCCeeeeCCeEECCCCEEEEEECCCCEEEEEECCCCe-----EE---EEECCC----CcEEEEEec-CCCEE
Confidence 3344555566778999999974 6688888889999999965443 12 333443 567899885 79999
Q ss_pred EEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC------CCeEEEEccCCcEEEEe
Q 039428 117 VAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV------SSKIWKVGVEGQLLSII 190 (335)
Q Consensus 117 v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~------~~~I~~~d~~g~~~~~~ 190 (335)
++.. +.|+++|+++++.....+.... ...+.+||+++|++|++|+++.. .+.+++++. |+...++
T Consensus 74 va~~-------~gl~~~d~~tg~~~~l~~~~~~-~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~-g~~~~~~ 144 (295)
T d2ghsa1 74 IASD-------DGLFLRDTATGVLTLHAELESD-LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-GKVTKLF 144 (295)
T ss_dssp EEET-------TEEEEEETTTCCEEEEECSSTT-CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-TEEEEEE
T ss_pred EEEe-------CccEEeecccceeeEEeeeecC-CCcccceeeEECCCCCEEEEeccccccccceeEeeecC-CcEEEEe
Confidence 9642 3599999999987755544322 23678999999999999999742 457777754 5544432
Q ss_pred cCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCc----eeEE-EEeccCCcCCCCCCeEEEcCCCc
Q 039428 191 RSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEE----EEVK-LIELRGGSSLSLGDGLALLSPTK 264 (335)
Q Consensus 191 ~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~----~~~~-~~~~~g~~~~~~pdGia~d~~g~ 264 (335)
. ....|||+++++++ .+|++++.+++|++++.+... +... .+...+ . ...||||++|++|+
T Consensus 145 ~-----------~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~-~-~g~pdG~~vD~~Gn 211 (295)
T d2ghsa1 145 A-----------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG-I-KGGMDGSVCDAEGH 211 (295)
T ss_dssp E-----------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT-S-SSEEEEEEECTTSC
T ss_pred e-----------ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCc-c-cccccceEEcCCCC
Confidence 1 23459999999999 899999999999999986531 1222 233333 1 35699999999999
Q ss_pred EEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe---CCeEEEE-eccCCCCCcccceeeeeeecC
Q 039428 265 LVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK---DGRVYLS-HLLGLGFPNTKKKHLLVEAVF 335 (335)
Q Consensus 265 l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~---~g~lyV~-~~~~~~~~~~~~~~~~~~~~~ 335 (335)
||||.++.+++.+++. ++ +++..+..|. ..||+++|. .++|||+ +..+++.+ +.+++|+++.+|
T Consensus 212 lWva~~~~g~V~~~dp-~G----~~~~~i~lP~-~~~T~~~FGG~d~~~LyvTta~~~~~~~-~~~~~p~~G~l~ 279 (295)
T d2ghsa1 212 IWNARWGEGAVDRYDT-DG----NHIARYEVPG-KQTTCPAFIGPDASRLLVTSAREHLDDD-AITANPQHGLTF 279 (295)
T ss_dssp EEEEEETTTEEEEECT-TC----CEEEEEECSC-SBEEEEEEESTTSCEEEEEEBCTTCCHH-HHHHCTTTTCEE
T ss_pred EEeeeeCCCceEEecC-CC----cEeeEecCCC-CceEEEEEeCCCCCEEEEEECCcCCChh-HhccCCCCceEE
Confidence 9999775466766653 33 4556666675 469999995 4789994 55555543 456677776665
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.93 E-value=1.8e-24 Score=190.74 Aligned_cols=229 Identities=14% Similarity=0.189 Sum_probs=161.6
Q ss_pred CcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 48 SFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
.+.|.++|+|++|++|+++ ...++|.+++. .+.. . ......+ ...|.||++++ +|+|||+ |..+
T Consensus 13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~-~~~~-----~--~~~~~~~--~~~p~gvav~~-~g~i~v~--d~~~-- 77 (260)
T d1rwia_ 13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLAT-GSTG-----T--TVLPFNG--LYQPQGLAVDG-AGTVYVT--DFNN-- 77 (260)
T ss_dssp CCCEEEEEECTTCCEEEEECSSSCEEEEEC-----C-----E--EECCCCS--CCSCCCEEECT-TCCEEEE--ETTT--
T ss_pred cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcC-CCce-----E--EEeccCC--ccCceEEEEcC-CCCEEEe--eeee--
Confidence 4689999999999999988 55688999974 3431 1 1222232 24799999997 7899994 5543
Q ss_pred cceEEEEECC-CCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 127 YSALAAYDLS-TWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 127 ~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
.+.+++.. ++... ... .....|+++++|++|++|++|..++++++++.++......... ...
T Consensus 78 --~~i~~~~~~~~~~~--~~~----~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~---------~~~ 140 (260)
T d1rwia_ 78 --RVVTLAAGSNNQTV--LPF----DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT---------GLN 140 (260)
T ss_dssp --EEEEECTTCSCCEE--CCC----CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC---------SCC
T ss_pred --ceeeeeeeccceee--eee----eeeeecccccccccceeEeeccccccccccccccceeeeeeec---------ccC
Confidence 24444433 33322 212 2267899999999999999999999999999988765432211 234
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcE
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWE 285 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~ 285 (335)
.|+||+++++|++|+++..+++|.+++.++. ....+... .+..|.||++|++|+|||++...+++..+..+...
T Consensus 141 ~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~--~~~~~~~~---~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~- 214 (260)
T d1rwia_ 141 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESN--NQVVLPFT---DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT- 214 (260)
T ss_dssp SCCEEEECTTCCEEEEEGGGTEEEEECTTTC--CEEECCCS---SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-
T ss_pred CcceeeecCCCCEeeeccccccccccccccc--eeeeeecc---ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-
Confidence 6999999999999999999999999999886 33333322 25779999999999999998855666555443221
Q ss_pred EEEEeeeecCCCCCcceEEEEe-CCeEEEEeccC
Q 039428 286 TASVVAKFNGPTHRVATAATVK-DGRVYLSHLLG 318 (335)
Q Consensus 286 ~~~~~~~~~~p~~~~Pt~va~~-~g~lyV~~~~~ 318 (335)
.+. +....+..|++++++ +|+|||+++.+
T Consensus 215 -~~~---~~~~~~~~P~~i~~d~~g~l~vad~~~ 244 (260)
T d1rwia_ 215 -STV---LPFTGLNTPLAVAVDSDRTVYVADRGN 244 (260)
T ss_dssp -CEE---CCCCSCCCEEEEEECTTCCEEEEEGGG
T ss_pred -EEE---EccCCCCCeEEEEEeCCCCEEEEECCC
Confidence 111 112235679999997 78999987643
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.92 E-value=1e-22 Score=183.18 Aligned_cols=244 Identities=17% Similarity=0.150 Sum_probs=167.4
Q ss_pred CCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 47 PSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
...+||++|++++|++|+++..+++|+++++ +++ .+ .+...+ ..|+|+++++ +|++||+..+ ++
T Consensus 26 ~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p-~g~-----~~--~~~~~~----~~~~gla~~~-dG~l~v~~~~--~~- 89 (302)
T d2p4oa1 26 VNTFLENLASAPDGTIFVTNHEVGEIVSITP-DGN-----QQ--IHATVE----GKVSGLAFTS-NGDLVATGWN--AD- 89 (302)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC-----EE--EEEECS----SEEEEEEECT-TSCEEEEEEC--TT-
T ss_pred CCCCcCCEEECCCCCEEEEeCCCCEEEEEeC-CCC-----EE--EEEcCC----CCcceEEEcC-CCCeEEEecC--Cc-
Confidence 4457999999999999888888999999984 565 22 132223 3689999997 8999996433 22
Q ss_pred cceEEEEEC--CCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEec-CCcccccccccc
Q 039428 127 YSALAAYDL--STWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIR-SPLFTAKEWYKN 203 (335)
Q Consensus 127 ~~~v~~~d~--~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~-~~~~~~~~~~~~ 203 (335)
.+.+++. ..+......... ....||+++++++|++|++++..+.|+++++++....++. .+..........
T Consensus 90 --~~~~~~~~~~~~~~~~~~~~~----~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (302)
T d2p4oa1 90 --SIPVVSLVKSDGTVETLLTLP----DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESV 163 (302)
T ss_dssp --SCEEEEEECTTSCEEEEEECT----TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred --eEEEEEecccccceeeccccC----CccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCc
Confidence 3555554 344444333331 1567999999999999999999999999999876655422 211111112234
Q ss_pred ccccCeEEEccCCeEEEEECCCCEEEEEeCCCCce--eEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 204 VFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEE--EVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 204 ~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~--~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
...+|||+++ ++++|++++.+++|++++.+.... ....+. . ...||||++|++|+||++....++++++..+
T Consensus 164 ~~~~ngi~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~----~~~pdgia~d~dG~l~va~~~~~~V~~i~p~ 237 (302)
T d2p4oa1 164 FPAANGLKRF-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-E----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 237 (302)
T ss_dssp SCSEEEEEEE-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-E----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred cccccccccc-CCceeeecCCCCeEEecccccccccccccccc-C----CCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence 4568999887 569999999999999999987531 112222 1 2459999999999999997755777777543
Q ss_pred CCcEEEEEeeeecCCCCCcceEEEEe-----CCeEEEEeccCCCCC
Q 039428 282 DGWETASVVAKFNGPTHRVATAATVK-----DGRVYLSHLLGLGFP 322 (335)
Q Consensus 282 ~~~~~~~~~~~~~~p~~~~Pt~va~~-----~g~lyV~~~~~~~~~ 322 (335)
+ +. ..+..... ....|++++|. +++|||++..+...|
T Consensus 238 -G-~~-~~~~~~~~-~~~~pt~vafg~~~~D~~~Lyvtt~~g~~~~ 279 (302)
T d2p4oa1 238 -R-ST-TIIAQAEQ-GVIGSTAVAFGQTEGDCTAIYVVTNGGMFLP 279 (302)
T ss_dssp -C-CE-EEEECGGG-TCTTEEEEEECCSTTTTTEEEEEECTTSSSC
T ss_pred -C-CE-EEEEecCC-CCCCceEEEEcCCCCCCCEEEEECCCCccCC
Confidence 3 11 12222222 24669999993 367999776655444
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.90 E-value=4.1e-23 Score=181.96 Aligned_cols=225 Identities=16% Similarity=0.169 Sum_probs=161.1
Q ss_pred hhhhhhhhhhhhhhhcCCCc-eeEEE------------cCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcce
Q 039428 20 IPIAYIISIELAIAMAKPAT-HVYQY------------HSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTV 86 (335)
Q Consensus 20 ~p~~~~~~~~~~~~~~d~~~-~~~~~------------~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v 86 (335)
.|.+++++.++.+++++... .++.. ......|++++++++|++|+++..++.|.+++ . +..
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~-~-~~~---- 88 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAA-G-SNN---- 88 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECT-T-CSC----
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeee-e-ccc----
Confidence 47888888888888876543 33332 11234799999999999877665555555443 3 331
Q ss_pred eeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc
Q 039428 87 LEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN 166 (335)
Q Consensus 87 ~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~ 166 (335)
. ....... .+.|.+|++|+ ++++|++ |..+ +++.+++..+..... ... .++..|++++++++|+
T Consensus 89 -~--~~~~~~~--~~~p~~iavd~-~g~i~v~--d~~~---~~~~~~~~~~~~~~~-~~~----~~~~~p~~i~~~~~g~ 152 (260)
T d1rwia_ 89 -Q--TVLPFDG--LNYPEGLAVDT-QGAVYVA--DRGN---NRVVKLAAGSKTQTV-LPF----TGLNDPDGVAVDNSGN 152 (260)
T ss_dssp -C--EECCCCS--CCSEEEEEECT-TCCEEEE--EGGG---TEEEEECTTCSSCEE-CCC----CSCCSCCEEEECTTCC
T ss_pred -e--eeeeeee--eeecccccccc-cceeEee--cccc---ccccccccccceeee-eee----cccCCcceeeecCCCC
Confidence 1 1222222 25799999997 7899995 5433 358889887654332 111 2267899999999999
Q ss_pred EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEecc
Q 039428 167 AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELR 246 (335)
Q Consensus 167 lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~ 246 (335)
+|+++..+++|+++++++.....+... .+..|+||+++++|+|||++..+++|+++++++. ....+...
T Consensus 153 ~~v~~~~~~~i~~~d~~~~~~~~~~~~---------~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~--~~~~~~~~ 221 (260)
T d1rwia_ 153 VYVTDTDNNRVVKLEAESNNQVVLPFT---------DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST--TSTVLPFT 221 (260)
T ss_dssp EEEEEGGGTEEEEECTTTCCEEECCCS---------SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS--CCEECCCC
T ss_pred Eeeeccccccccccccccceeeeeecc---------ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC--eEEEEccC
Confidence 999999999999999998766543221 2346999999999999999999999999998876 33333322
Q ss_pred CCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 247 GGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 247 g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
.+..|.||++|++|+|||++...++|+.+..
T Consensus 222 ---~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 222 ---GLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp ---SCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred ---CCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 2677999999999999999876677766654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.90 E-value=4.5e-21 Score=170.40 Aligned_cols=236 Identities=13% Similarity=0.074 Sum_probs=167.7
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeec--CCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKE--DDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~--~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
..|.++|++++|++|+++..+++|.++| ++|++ +.. +... +......|.+++++...+..+++ .+...
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d-~~G~~----~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~-- 92 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFD-KEGRF----KFQ--FGECGKRDSQLLYPNRVAVVRNSGDIIVT-ERSPT-- 92 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEEC-TTSCE----EEE--ECCBSSSTTCBSSEEEEEEETTTTEEEEE-ECGGG--
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEe-CCCCE----EEE--ecccCCCccccccccccccccccccccee-ccCCc--
Confidence 4799999999999988888889999998 46763 221 2111 11111368899987655666664 33322
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
..|.+++..+.... .... .....|+++++|++|++|+++...+++++++++|+.+..++.. .....
T Consensus 93 -~~i~~~~~~g~~~~-~~~~----~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~--------~~~~~ 158 (279)
T d1q7fa_ 93 -HQIQIYNQYGQFVR-KFGA----TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS--------KHLEF 158 (279)
T ss_dssp -CEEEEECTTSCEEE-EECT----TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECT--------TTCSS
T ss_pred -ccccccccccccee-ecCC----CcccccceeccccCCcEEEEeeccceeeEeccCCceeeccccc--------ccccc
Confidence 35888887654333 2222 1267899999999999999999999999999999887655432 12346
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCC-eEEEEEcCCCcE
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYP-SARLVESSDGWE 285 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~-~~~v~~~~~~~~ 285 (335)
|++++++++|++|+++..+++|++++.++. ....+...+ .+..|.||++|++|++||++...+ .+.++.. +| +
T Consensus 159 ~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~--~~~~~g~~g--~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G-~ 232 (279)
T d1q7fa_ 159 PNGVVVNDKQEIFISDNRAHCVKVFNYEGQ--YLRQIGGEG--ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DG-Q 232 (279)
T ss_dssp EEEEEECSSSEEEEEEGGGTEEEEEETTCC--EEEEESCTT--TSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TS-C
T ss_pred cceeeeccceeEEeeeccccceeeeecCCc--eeeeecccc--cccCCcccccccCCeEEEEECCCCcEEEEECC-CC-C
Confidence 899999999999999999999999999887 566665433 267899999999999999976433 3555443 33 2
Q ss_pred EEEEeeeecCCCCCcceEEEEe-CCeEEEEec
Q 039428 286 TASVVAKFNGPTHRVATAATVK-DGRVYLSHL 316 (335)
Q Consensus 286 ~~~~~~~~~~p~~~~Pt~va~~-~g~lyV~~~ 316 (335)
....... ......|++++++ +|+|||++.
T Consensus 233 ~~~~~~~--~~~~~~p~~vav~~dG~l~V~~~ 262 (279)
T d1q7fa_ 233 LISALES--KVKHAQCFDVALMDDGSVVLASK 262 (279)
T ss_dssp EEEEEEE--SSCCSCEEEEEEETTTEEEEEET
T ss_pred EEEEEeC--CCCCCCEeEEEEeCCCcEEEEeC
Confidence 1122221 1124468999997 899999763
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.86 E-value=2.8e-20 Score=165.18 Aligned_cols=229 Identities=13% Similarity=0.065 Sum_probs=168.6
Q ss_pred hhhhhhhhhhhhhhhcCCCceeEEEc-----------------CCCcceeeeEEcCCCCEEEE-E-ecCCeEEEEECCCC
Q 039428 20 IPIAYIISIELAIAMAKPATHVYQYH-----------------SPSFLCETAKWDDVGRRFLV-S-FLDGGVGQVLVPDE 80 (335)
Q Consensus 20 ~p~~~~~~~~~~~~~~d~~~~~~~~~-----------------~~~~~pegia~d~~g~~~~~-~-~~~~~I~~~d~~~g 80 (335)
.|.+++++.++.++++|..++++..- +....|.+++++.+.+.+++ . ..+++|.+++ .++
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g 102 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYG 102 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTS
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc-ccc
Confidence 58889998889999999877776641 12346889998777554444 4 4567899997 456
Q ss_pred CCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCcee
Q 039428 81 YSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIA 160 (335)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~ 160 (335)
.. .. ...... ...|.++++++ +|++|++ |... +++.++|+++..+. .... . ..+..|++++
T Consensus 103 ~~----~~---~~~~~~--~~~p~~~avd~-~G~i~v~--~~~~---~~~~~~~~~g~~~~-~~g~--~-~~~~~~~~i~ 163 (279)
T d1q7fa_ 103 QF----VR---KFGATI--LQHPRGVTVDN-KGRIIVV--ECKV---MRVIIFDQNGNVLH-KFGC--S-KHLEFPNGVV 163 (279)
T ss_dssp CE----EE---EECTTT--CSCEEEEEECT-TSCEEEE--ETTT---TEEEEECTTSCEEE-EEEC--T-TTCSSEEEEE
T ss_pred cc----ee---ecCCCc--ccccceecccc-CCcEEEE--eecc---ceeeEeccCCceee-cccc--c-ccccccceee
Confidence 52 11 221222 25789999996 8899995 4433 35999998765433 2222 1 2368899999
Q ss_pred ECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCC-CEEEEEeCCCCcee
Q 039428 161 VDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCS-GNLFKIDIRKEEEE 239 (335)
Q Consensus 161 vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~-~~v~~~d~~~~~~~ 239 (335)
+|++|++|++|..+++|++++++|+....++.. +.+..|.|||++++|+|||+|..+ ++|.+|+.++. .
T Consensus 164 ~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~--------g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~--~ 233 (279)
T d1q7fa_ 164 VNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGE--------GITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ--L 233 (279)
T ss_dssp ECSSSEEEEEEGGGTEEEEEETTCCEEEEESCT--------TTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC--E
T ss_pred eccceeEEeeeccccceeeeecCCceeeeeccc--------ccccCCcccccccCCeEEEEECCCCcEEEEECCCCC--E
Confidence 999999999999999999999999987755421 134569999999999999999764 57999998876 6
Q ss_pred EEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 240 VKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 240 ~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
+..+.... . ...|.+++++++|+|||++. .+++++++..
T Consensus 234 ~~~~~~~~-~-~~~p~~vav~~dG~l~V~~~-n~~v~~fr~~ 272 (279)
T d1q7fa_ 234 ISALESKV-K-HAQCFDVALMDDGSVVLASK-DYRLYIYRYV 272 (279)
T ss_dssp EEEEEESS-C-CSCEEEEEEETTTEEEEEET-TTEEEEEECS
T ss_pred EEEEeCCC-C-CCCEeEEEEeCCCcEEEEeC-CCeEEEEEee
Confidence 66665433 2 45699999999999999975 3778888864
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.81 E-value=2e-18 Score=155.89 Aligned_cols=203 Identities=15% Similarity=0.155 Sum_probs=142.3
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeec--CCcCCCCcceEEEeCCCCeEEEEEecCCC---
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKE--DDVVGNATMGIAVDRPRNRLLVAFTDVLG--- 124 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~--~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~--- 124 (335)
.|.|++++++|+++|+....+.|.++++ ++.. .+ ++.. .+...+.|+.+++|+ +|+||++ |..+
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~-~g~~-----~~--~~~~~~~g~~~~~pndl~~d~-~G~lyvt--d~~~~~~ 140 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQT-DGTF-----EE--IAKKDSEGRRMQGCNDCAFDY-EGNLWIT--APAGEVA 140 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEET-TSCE-----EE--CCSBCTTSCBCBCCCEEEECT-TSCEEEE--ECBCBCT
T ss_pred cceeEEEeCCCCEEEEEECCCeEEEEeC-CCcE-----EE--EEeccccccccCCCcEEEECC-CCCEEEe--cCccCcc
Confidence 5899999999998888855678999985 5651 11 2211 111224689999997 8999995 3221
Q ss_pred ---------CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-----cEEEEeCCCCeEEEEcc--CCcEEE
Q 039428 125 ---------NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-----NAYVTDVVSSKIWKVGV--EGQLLS 188 (335)
Q Consensus 125 ---------~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-----~lyV~d~~~~~I~~~d~--~g~~~~ 188 (335)
...++|+++++++........ ...||++++++++ .+||+|+.+++|++++. +|....
T Consensus 141 ~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~-------~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~ 213 (314)
T d1pjxa_ 141 PADYTRSMQEKFGSIYCFTTDGQMIQVDTA-------FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN 213 (314)
T ss_dssp TSCCCBTTSSSCEEEEEECTTSCEEEEEEE-------ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE
T ss_pred cccccceeccCCceEEEEeecCceeEeeCC-------cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce
Confidence 112579999987653332211 5689999998765 49999999999999874 343321
Q ss_pred --EecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cE
Q 039428 189 --IIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KL 265 (335)
Q Consensus 189 --~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l 265 (335)
.+.. +.. .....|+||++|++|+|||++..+++|++|++++++ ....+..++ ..|.++++.+++ +|
T Consensus 214 ~~~~~~--~~~----~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~-~~~~i~~p~----~~~t~~afg~d~~~l 282 (314)
T d1pjxa_ 214 KKVWGH--IPG----THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ-PKMRIRCPF----EKPSNLHFKPQTKTI 282 (314)
T ss_dssp EEEEEE--CCC----CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS-CSEEEECSS----SCEEEEEECTTSSEE
T ss_pred eeEEEE--ccc----cccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCE-EEEEEECCC----CCEEEEEEeCCCCEE
Confidence 1110 110 112359999999999999999999999999998763 344555543 348899999988 59
Q ss_pred EEEecCCCeEEEEEcC
Q 039428 266 VVAGNPYPSARLVESS 281 (335)
Q Consensus 266 ~va~~~~~~~~v~~~~ 281 (335)
||++...++++.++..
T Consensus 283 yVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 283 FVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEETTTTEEEEEECS
T ss_pred EEEECCCCcEEEEECC
Confidence 9998766778777754
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.77 E-value=3.3e-17 Score=148.01 Aligned_cols=225 Identities=14% Similarity=0.160 Sum_probs=149.3
Q ss_pred hhhhhhhhhhhhhcCCCceeEEE------------cCCCcceeeeEEcCCCCEEEEEec----CCeEEEEECCCCCCCcc
Q 039428 22 IAYIISIELAIAMAKPATHVYQY------------HSPSFLCETAKWDDVGRRFLVSFL----DGGVGQVLVPDEYSPGT 85 (335)
Q Consensus 22 ~~~~~~~~~~~~~~d~~~~~~~~------------~~~~~~pegia~d~~g~~~~~~~~----~~~I~~~d~~~g~~~~~ 85 (335)
.++++..++.++|.|...++|.. ......|.+++++++|++|+++.. .+.|+.++.. +..
T Consensus 43 EG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~-~~~--- 118 (319)
T d2dg1a1 43 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN-GDN--- 118 (319)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT-SCS---
T ss_pred EeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCC-Cce---
Confidence 45666666677777655544332 122336899999999999888732 4678999753 431
Q ss_pred eeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC---ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeEC
Q 039428 86 VLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN---KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVD 162 (335)
Q Consensus 86 v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~---~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd 162 (335)
+. ... ........++++++++ +|++|++ |..+. ....+++++++++.+..... +...||+++++
T Consensus 119 -~~--~~~-~~~~~~~~~nd~~~d~-~G~l~vt--d~~~~~~~~~g~v~~~~~dg~~~~~~~~------~~~~pnGia~s 185 (319)
T d2dg1a1 119 -LQ--DII-EDLSTAYCIDDMVFDS-KGGFYFT--DFRGYSTNPLGGVYYVSPDFRTVTPIIQ------NISVANGIALS 185 (319)
T ss_dssp -CE--EEE-CSSSSCCCEEEEEECT-TSCEEEE--ECCCBTTBCCEEEEEECTTSCCEEEEEE------EESSEEEEEEC
T ss_pred -ee--eec-cCCCcccCCcceeEEe-ccceeec--ccccccccCcceeEEEecccceeEEEee------ccceeeeeeec
Confidence 22 122 2222235789999997 8999995 43321 12569999998776543222 15789999999
Q ss_pred CCCc-EEEEeCCCCeEEEEccC--CcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCcee
Q 039428 163 AEGN-AYVTDVVSSKIWKVGVE--GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEE 239 (335)
Q Consensus 163 ~~G~-lyV~d~~~~~I~~~d~~--g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~ 239 (335)
++|+ +||+|+.+++|++++.+ +............ .......|.||++|++|+|||++..+++|.+|++++. .
T Consensus 186 ~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~---~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~--~ 260 (319)
T d2dg1a1 186 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY---YFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY--P 260 (319)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE---ECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC--E
T ss_pred cccceEEEecccCCceEEEEEcCCCceeccccceeee---ccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCc--E
Confidence 9985 99999999999999754 3332211100000 0112345999999999999999999999999999876 7
Q ss_pred EEEEeccCCc--CCCCCCeEEEcCCC-cEEEE
Q 039428 240 VKLIELRGGS--SLSLGDGLALLSPT-KLVVA 268 (335)
Q Consensus 240 ~~~~~~~g~~--~~~~pdGia~d~~g-~l~va 268 (335)
+..+.+++.. ....+..+++.+++ .+|++
T Consensus 261 l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t 292 (319)
T d2dg1a1 261 IGQILIPGRDEGHMLRSTHPQFIPGTNQLIIC 292 (319)
T ss_dssp EEEEECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred EEEEeCCCcCCCcCceeeeEEEeCCCCEEEEE
Confidence 7778765421 12346677777655 45555
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.76 E-value=3.9e-16 Score=137.16 Aligned_cols=217 Identities=15% Similarity=0.131 Sum_probs=151.4
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.+.++++|...+.+|++ ...++|++.+. ++.. .+ .++ ..+. ..|.||++|.-+++||++ |... .
T Consensus 37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l-~g~~----~~--~v~-~~~~--~~p~~iAvD~~~~~lY~~--d~~~---~ 101 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTDISEPSIGRASL-HGGE----PT--TII-RQDL--GSPEGIALDHLGRTIFWT--DSQL---D 101 (263)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEES-SSCC----CE--EEE-CTTC--CCEEEEEEETTTTEEEEE--ETTT---T
T ss_pred cEEEEEEEeCCCEEEEEECCCCeEEEEEc-ccCC----cE--EEE-Eecc--ccccEEEEeccCCeEEEe--ccCC---C
Confidence 46689999887766666 77899999985 4542 12 233 2222 378999999768999995 4433 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCC--CCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVV--SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~--~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
.|.++++++......... ....|.++++||. |.+|+++.. ..+|++.+.+|...+.+... ...
T Consensus 102 ~I~~~~~dg~~~~~l~~~-----~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~---------~~~ 167 (263)
T d1npea_ 102 RIEVAKMDGTQRRVLFDT-----GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD---------NLG 167 (263)
T ss_dssp EEEEEETTSCSCEEEECS-----SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT---------TCS
T ss_pred EEEEEecCCceEEEEecc-----cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee---------ccc
Confidence 699999987643322221 2567999999985 789999875 45799999998754433221 234
Q ss_pred ccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCc
Q 039428 206 GLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGW 284 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~ 284 (335)
.|+||++|+.+ +||++|...++|.++++++. ..+.+. .+ +..|.||+++ ++.+|+++...+++..++...+.
T Consensus 168 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~--~~~~v~-~~---~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~ 240 (263)
T d1npea_ 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP--GRRKVL-EG---LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISK 240 (263)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTEE--EEEEEE-EC---CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTE
T ss_pred ccceEEEeecCcEEEEEeCCCCEEEEEECCCC--CeEEEE-CC---CCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCc
Confidence 59999999866 99999999999999999986 444443 23 4568999998 58999998877888888776552
Q ss_pred EEEEEeeeecCCCCCcceEEEE
Q 039428 285 ETASVVAKFNGPTHRVATAATV 306 (335)
Q Consensus 285 ~~~~~~~~~~~p~~~~Pt~va~ 306 (335)
.. ..+.......|.++++
T Consensus 241 ~~----~~~~~~~~~~~~gi~v 258 (263)
T d1npea_ 241 EM----DTFHPHKQTRLYGITI 258 (263)
T ss_dssp EE----EEECCSSCCCCCCEEE
T ss_pred cc----eEECCCCCCCcceEEE
Confidence 22 1121112334677776
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=6e-16 Score=136.16 Aligned_cols=207 Identities=19% Similarity=0.144 Sum_probs=144.5
Q ss_pred CcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 48 SFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
...+.++++|..++.+|++ ...+.|++.+. ++.......+ .++ ..+. ..|.||++|.-+++||++ |...
T Consensus 29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l-~~~~~~~~~~--~~~-~~~~--~~p~glAvD~~~~~lY~~--d~~~-- 98 (266)
T d1ijqa1 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQL-DRAHGVSSYD--TVI-SRDI--QAPDGLAVDWIHSNIYWT--DSVL-- 98 (266)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CE--EEE-CSSC--SCCCEEEEETTTTEEEEE--ETTT--
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEEe-cCCCCCcceE--EEE-eCCC--CCcceEEEeeccceEEEE--ecCC--
Confidence 3467899999887766666 77889999874 3321000011 122 2222 368999999778999995 5433
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCC-CCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVV-SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~-~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
++|.++++++......... ....|.++++|+ +|.+|+++.. .++|++.+.+|...+.+-.. ..
T Consensus 99 -~~I~v~~~~g~~~~~~~~~-----~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~---------~~ 163 (266)
T d1ijqa1 99 -GTVSVADTKGVKRKTLFRE-----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---------NI 163 (266)
T ss_dssp -TEEEEEETTSSSEEEEEEC-----TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS---------SC
T ss_pred -CEEEeEecCCceEEEEEcC-----CCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc---------cc
Confidence 4699999987754432221 156799999998 5899999975 46899999998765543221 23
Q ss_pred cccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 205 FGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
..|+||++|+.+ +||++|...++|.++++++.. ....+.. . ..+..|.||+++ ++.+|+++...+++..+...++
T Consensus 164 ~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~-~~~~~~~-~-~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g 239 (266)
T d1ijqa1 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILED-E-KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (266)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEEC-T-TTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred ceeeEEEeeccccEEEEecCCcCEEEEEECCCCC-EEEEEeC-C-CcccccEEEEEE-CCEEEEEECCCCeEEEEECCCC
Confidence 459999999866 999999999999999999863 3333332 2 225679999999 5799999887788877776554
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.68 E-value=2.1e-15 Score=134.64 Aligned_cols=224 Identities=11% Similarity=0.061 Sum_probs=149.3
Q ss_pred hhhhhhhhhhhhhcCCCceeEEE----------cCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeE
Q 039428 22 IAYIISIELAIAMAKPATHVYQY----------HSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVK 91 (335)
Q Consensus 22 ~~~~~~~~~~~~~~d~~~~~~~~----------~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~ 91 (335)
.+++++.++.+++++...++|.. ....-.|.+++++++|++|+++...+.+++++...... + .. .
T Consensus 31 e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~--~-~~--~ 105 (302)
T d2p4oa1 31 ENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG--T-VE--T 105 (302)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS--C-EE--E
T ss_pred CCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc--c-ee--e
Confidence 35566777777777776555432 12234689999999999888887777777776322221 1 11 1
Q ss_pred EeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecC-----CCccCCCCCCceeECCCCc
Q 039428 92 LVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLS-----GKSEEKSTADDIAVDAEGN 166 (335)
Q Consensus 92 ~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~p~~~~vd~~G~ 166 (335)
+...+. +..++++++++ ++++|++ +... ..++++|+.++.......-. ........+|+++.|. +.
T Consensus 106 ~~~~~~--~~~~n~i~~~~-~g~~~v~--~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~ 176 (302)
T d2p4oa1 106 LLTLPD--AIFLNGITPLS-DTQYLTA--DSYR---GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NF 176 (302)
T ss_dssp EEECTT--CSCEEEEEESS-SSEEEEE--ETTT---TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TE
T ss_pred ccccCC--ccccceeEEcc-CCCEEee--cccc---ccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Cc
Confidence 322333 24689999996 8999995 4433 46999999988655222110 0111256788888874 46
Q ss_pred EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEecc
Q 039428 167 AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELR 246 (335)
Q Consensus 167 lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~ 246 (335)
+|++++.+++|++++.++..... ... .......|.||++++||+||+++..+++|+||+++++ ........
T Consensus 177 l~~~~~~~~~i~~~~~~~~~~~~--~~~-----~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~--~~~~~~~~ 247 (302)
T d2p4oa1 177 LYVSNTEKMLLLRIPVDSTDKPG--EPE-----IFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS--TTIIAQAE 247 (302)
T ss_dssp EEEEETTTTEEEEEEBCTTSCBC--CCE-----EEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC--EEEEECGG
T ss_pred eeeecCCCCeEEecccccccccc--ccc-----cccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC--EEEEEecC
Confidence 99999999999999987532110 000 0112346999999999999999999999999999886 44444432
Q ss_pred CCcCCCCCCeEEEc---CCC-cEEEEec
Q 039428 247 GGSSLSLGDGLALL---SPT-KLVVAGN 270 (335)
Q Consensus 247 g~~~~~~pdGia~d---~~g-~l~va~~ 270 (335)
..+..|..++++ +|+ .|||+.+
T Consensus 248 --~~~~~pt~vafg~~~~D~~~Lyvtt~ 273 (302)
T d2p4oa1 248 --QGVIGSTAVAFGQTEGDCTAIYVVTN 273 (302)
T ss_dssp --GTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred --CCCCCceEEEEcCCCCCCCEEEEECC
Confidence 225679999995 344 5999865
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=4.9e-15 Score=130.01 Aligned_cols=188 Identities=15% Similarity=0.176 Sum_probs=135.7
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEE
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKV 180 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~ 180 (335)
.+.||++|..+++||. +|... +.|.+.+++++........ +...|.++++|. .+++|++|...++|.++
T Consensus 37 ~~~~ld~D~~~~~iyw--sd~~~---~~I~~~~l~g~~~~~v~~~-----~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~ 106 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYW--TDISE---PSIGRASLHGGEPTTIIRQ-----DLGSPEGIALDHLGRTIFWTDSQLDRIEVA 106 (263)
T ss_dssp EEEEEEEETTTTEEEE--EETTT---TEEEEEESSSCCCEEEECT-----TCCCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cEEEEEEEeCCCEEEE--EECCC---CeEEEEEcccCCcEEEEEe-----ccccccEEEEeccCCeEEEeccCCCEEEEE
Confidence 4678999988899999 46544 3599999887654433221 246789999997 57899999999999999
Q ss_pred ccCCcEEEEecCCccccccccccccccCeEEEccC-CeEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeE
Q 039428 181 GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD-GFLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGL 257 (335)
Q Consensus 181 d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d-g~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGi 257 (335)
+++|+..+.+... ....|.+|+++|. |.||+++.+. .+|+|.++++. ..+.+...+ +..|.||
T Consensus 107 ~~dg~~~~~l~~~---------~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~--~~~~i~~~~---~~~P~gl 172 (263)
T d1npea_ 107 KMDGTQRRVLFDT---------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--NRRILAQDN---LGLPNGL 172 (263)
T ss_dssp ETTSCSCEEEECS---------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC--CCEEEECTT---CSCEEEE
T ss_pred ecCCceEEEEecc---------cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC--Cceeeeeec---ccccceE
Confidence 9998764433211 1345899999995 5999999764 47999999987 333443222 5679999
Q ss_pred EEcCC-CcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEeCCeEEEEeccCC
Q 039428 258 ALLSP-TKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVKDGRVYLSHLLGL 319 (335)
Q Consensus 258 a~d~~-g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~~~~~~ 319 (335)
++|.. ++||+++.+.+.+..++.+.. ....+.. ....|.++++.+++||++++...
T Consensus 173 aiD~~~~~lYw~d~~~~~I~~~~~~g~-~~~~v~~-----~~~~P~~lav~~~~lYwtd~~~~ 229 (263)
T d1npea_ 173 TFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLE-----GLQYPFAVTSYGKNLYYTDWKTN 229 (263)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEE-----CCCSEEEEEEETTEEEEEETTTT
T ss_pred EEeecCcEEEEEeCCCCEEEEEECCCC-CeEEEEC-----CCCCcEEEEEECCEEEEEECCCC
Confidence 99966 579999887677877776432 2222222 23458899999999999876533
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=5.4e-14 Score=123.45 Aligned_cols=213 Identities=15% Similarity=0.203 Sum_probs=143.5
Q ss_pred CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEE--EEeec
Q 039428 69 DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRL--FLTQL 146 (335)
Q Consensus 69 ~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~--~~~~~ 146 (335)
...|.+++..+.+. . .++ ++. +.+.+|.+|..+++||. .|... ..|.+.++++.... ...-.
T Consensus 9 ~~~I~~~~l~~~~~-----~--~~~--~~~--~~~~~id~d~~~~~lYw--~D~~~---~~I~~~~l~~~~~~~~~~~~~ 72 (266)
T d1ijqa1 9 RHEVRKMTLDRSEY-----T--SLI--PNL--RNVVALDTEVASNRIYW--SDLSQ---RMICSTQLDRAHGVSSYDTVI 72 (266)
T ss_dssp BSSEEEEETTSCCC-----E--EEE--CSC--SSEEEEEEETTTTEEEE--EETTT---TEEEEEEC--------CEEEE
T ss_pred CCeEEEEECCCCcc-----e--eee--CCC--CceEEEEEEeCCCEEEE--EECCC---CEEEEEEecCCCCCcceEEEE
Confidence 45799998643331 2 233 332 36789999988899999 45543 35888887643211 00001
Q ss_pred CCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEcc-CCeEEEEECC
Q 039428 147 SGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHP-DGFLIVIHMC 224 (335)
Q Consensus 147 ~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~-dg~Lyvad~~ 224 (335)
......|.++++|.. +++|++|...++|.+++.+|+....+... ....|.+|+++| .|.||+++..
T Consensus 73 ---~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~---------~~~~P~~l~vd~~~g~ly~~~~~ 140 (266)
T d1ijqa1 73 ---SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---------NGSKPRAIVVDPVHGFMYWTDWG 140 (266)
T ss_dssp ---CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC---------TTCCEEEEEEETTTTEEEEEECS
T ss_pred ---eCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcC---------CCCCcceEEEEcccCeEEEeccC
Confidence 112578999999975 68999999999999999998765432111 234599999998 5699999976
Q ss_pred C-CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCC-CcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcce
Q 039428 225 S-GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSP-TKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVAT 302 (335)
Q Consensus 225 ~-~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~-g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt 302 (335)
. .+|+|.++++. ..+.+...+ +..|.|+++|+. ++||+++...+.+..++.+..- ...+... ......|.
T Consensus 141 ~~~~I~r~~~dGs--~~~~l~~~~---~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~-~~~~~~~--~~~~~~p~ 212 (266)
T d1ijqa1 141 TPAKIKKGGLNGV--DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILED--EKRLAHPF 212 (266)
T ss_dssp SSCEEEEEETTSC--CEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEEC--TTTTSSEE
T ss_pred CCcceeEeccCCC--ceecccccc---cceeeEEEeeccccEEEEecCCcCEEEEEECCCCC-EEEEEeC--CCcccccE
Confidence 4 58999999987 444443222 567999999976 5799998866788877764321 1222221 12345689
Q ss_pred EEEEeCCeEEEEecc
Q 039428 303 AATVKDGRVYLSHLL 317 (335)
Q Consensus 303 ~va~~~g~lyV~~~~ 317 (335)
++++.+++||++++.
T Consensus 213 ~lav~~~~ly~td~~ 227 (266)
T d1ijqa1 213 SLAVFEDKVFWTDII 227 (266)
T ss_dssp EEEEETTEEEEEETT
T ss_pred EEEEECCEEEEEECC
Confidence 999999999998754
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.63 E-value=1.5e-14 Score=128.98 Aligned_cols=197 Identities=15% Similarity=0.175 Sum_probs=133.3
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeEEEEEecCCCC-
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRLLVAFTDVLGN- 125 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~- 125 (335)
...|.+++++++|++++.+ ...|+++|+.+++ ++ .+.. ......+.++.+.+|+ +|++|++..+....
T Consensus 58 ~~~~~~i~~~~dg~l~va~--~~gl~~~d~~tg~-----~~--~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~ 127 (295)
T d2ghsa1 58 PFMGSALAKISDSKQLIAS--DDGLFLRDTATGV-----LT--LHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAET 127 (295)
T ss_dssp SSCEEEEEEEETTEEEEEE--TTEEEEEETTTCC-----EE--EEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCT
T ss_pred CCCcEEEEEecCCCEEEEE--eCccEEeecccce-----ee--EEeeeecCCCcccceeeEECC-CCCEEEEeccccccc
Confidence 3457899999999887765 4589999976555 22 1221 1222335789999997 89999975432211
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCC-cccccccccc
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSP-LFTAKEWYKN 203 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~-~~~~~~~~~~ 203 (335)
....+++++ .+++..... ....||+++++++++ +|++|+..++|++++.+.......+.. .+.. ....
T Consensus 128 ~~g~l~~~~--~g~~~~~~~------~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~--~~~~ 197 (295)
T d2ghsa1 128 GAGSIYHVA--KGKVTKLFA------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID--STGI 197 (295)
T ss_dssp TCEEEEEEE--TTEEEEEEE------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE--CTTS
T ss_pred cceeEeeec--CCcEEEEee------ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEec--cCcc
Confidence 113455554 455442221 157899999999985 999999999999998764321111100 0110 0112
Q ss_pred ccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC-C-CcEEEEec
Q 039428 204 VFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS-P-TKLVVAGN 270 (335)
Q Consensus 204 ~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~-~-g~l~va~~ 270 (335)
...|.|+++|++|+|||+....++|.+|++++. ....+.++. ..|..+++.. + ..|||+..
T Consensus 198 ~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~--~~~~i~lP~----~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 198 KGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGN--HIARYEVPG----KQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp SSEEEEEEECTTSCEEEEEETTTEEEEECTTCC--EEEEEECSC----SBEEEEEEESTTSCEEEEEEB
T ss_pred cccccceEEcCCCCEEeeeeCCCceEEecCCCc--EeeEecCCC----CceEEEEEeCCCCCEEEEEEC
Confidence 346999999999999999999999999999887 778888764 2488999973 4 46999854
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.62 E-value=3e-13 Score=122.72 Aligned_cols=246 Identities=17% Similarity=0.195 Sum_probs=149.8
Q ss_pred cceeeeEEcCCCCEEEEEe-c-----------CCeEEEEECCCCCCCcceeeeeEEeec-CCcCCCCcceEEEeC-CCC-
Q 039428 49 FLCETAKWDDVGRRFLVSF-L-----------DGGVGQVLVPDEYSPGTVLEEVKLVKE-DDVVGNATMGIAVDR-PRN- 113 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~-~-----------~~~I~~~d~~~g~~~~~v~~~~~~~~~-~~~~~~~p~Gi~~d~-~~g- 113 (335)
..||.++++++|..|+++. . .|.|+.+|..+.. + + ..+..+... +....-.|+||.+-. ++|
T Consensus 35 ~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~-~-~-~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~ 111 (340)
T d1v04a_ 35 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKE-P-A-VSELEIIGNTLDISSFNPHGISTFIDDDNT 111 (340)
T ss_dssp SCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSS-C-C-EEECEEECSSSCGGGCCEEEEEEEECTTCC
T ss_pred CCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCC-C-c-ceEEEecCCCCCCcceeccceeEEEcCCCc
Confidence 3699999999998887772 1 3889999854332 1 1 121122211 111112689998732 134
Q ss_pred -eEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC-----------------CCC
Q 039428 114 -RLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-----------------VSS 175 (335)
Q Consensus 114 -~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-----------------~~~ 175 (335)
+|||++-...+.. -.++.++.++.++.+......+ ....|||+++..+|.+|+|+. ..+
T Consensus 112 ~~L~vvnH~~~~~~-ieif~~~~~~~~l~~~~~v~~~--~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g 188 (340)
T d1v04a_ 112 VYLLVVNHPGSSST-VEVFKFQEEEKSLLHLKTIRHK--LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS 188 (340)
T ss_dssp EEEEEEECSTTCCE-EEEEEEETTTTEEEEEEEECCT--TCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCE
T ss_pred EEEEEEeccCCCce-eEEEEEeCCCCeEEEEeecCCc--cccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCce
Confidence 6778654222221 3566677777777766666443 368899999999999999963 245
Q ss_pred eEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCce--eEEEEeccCCcCCC
Q 039428 176 KIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEE--EVKLIELRGGSSLS 252 (335)
Q Consensus 176 ~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~--~~~~~~~~g~~~~~ 252 (335)
.|+.++++... .+.. .+..||||+++||+ .|||+++..++|++++.++.+. ....+.++ .
T Consensus 189 ~v~~~~~~~~~-~~~~-----------~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~-----~ 251 (340)
T d1v04a_ 189 FVTYYSPNDVR-VVAE-----------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD-----T 251 (340)
T ss_dssp EEEEECSSCEE-EEEE-----------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS-----S
T ss_pred eEEEEcCCceE-EEcC-----------CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCC-----C
Confidence 67777665322 2111 24569999999998 9999999999999999987531 22223333 3
Q ss_pred CCCeEEEcC-CCcEEEEecCC------------CeEEEEEc---C-CCcEEEEEeeeecCCCCCcceEEEEeCCeEEEEe
Q 039428 253 LGDGLALLS-PTKLVVAGNPY------------PSARLVES---S-DGWETASVVAKFNGPTHRVATAATVKDGRVYLSH 315 (335)
Q Consensus 253 ~pdGia~d~-~g~l~va~~~~------------~~~~v~~~---~-~~~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~~ 315 (335)
.||++.+|+ +|.+|++.... ....+++. . .+++..++... .+......|.+...+|+|||..
T Consensus 252 ~pDNi~~d~~~g~lwva~~p~~~~~~~~~~~~~~~s~v~ri~~~~~~~~~v~~~~~~-~G~~~~~~T~a~~~~g~L~iGs 330 (340)
T d1v04a_ 252 LVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVYKGKLLIGT 330 (340)
T ss_dssp EEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEEEEE-CSSSSCSEEEEEEETTEEEEEE
T ss_pred CCCccEEecCCCEEEEEECCcccchhhhcccCCCCceeEEEEeccCCCCeEEEEEeC-CCcEeeceEEEEEECCEEEEEe
Confidence 499999996 57899994310 01122221 1 22443333222 2223333444444699999976
Q ss_pred ccC
Q 039428 316 LLG 318 (335)
Q Consensus 316 ~~~ 318 (335)
.+.
T Consensus 331 ~~~ 333 (340)
T d1v04a_ 331 VFH 333 (340)
T ss_dssp SSS
T ss_pred eeC
Confidence 543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.56 E-value=6.6e-12 Score=109.11 Aligned_cols=245 Identities=15% Similarity=0.165 Sum_probs=162.6
Q ss_pred hhhhhhhcCCCceeEEE-cCCCcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcce
Q 039428 28 IELAIAMAKPATHVYQY-HSPSFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMG 105 (335)
Q Consensus 28 ~~~~~~~~d~~~~~~~~-~~~~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~G 105 (335)
....+.+.|..+.++.- -..+..|.+++++|+|+.+|++ ..+++|.+||..+++ .+. .+ +. +..|.+
T Consensus 10 ~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~----~~~---~~--~~--~~~~~~ 78 (301)
T d1l0qa2 10 ESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN----VIA---TV--PA--GSSPQG 78 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE----EEE---EE--EC--SSSEEE
T ss_pred CCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc----eee---ee--ec--cccccc
Confidence 34456777776654332 1223469999999999987776 678999999965443 122 22 21 136889
Q ss_pred EEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCC
Q 039428 106 IAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEG 184 (335)
Q Consensus 106 i~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g 184 (335)
+++++++..++++..+ . ..+..+|..+++....... ...+..++++++|+ ++++......+..++...
T Consensus 79 ~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~ 147 (301)
T d1l0qa2 79 VAVSPDGKQVYVTNMA--S---STLSVIDTTSNTVAGTVKT------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147 (301)
T ss_dssp EEECTTSSEEEEEETT--T---TEEEEEETTTTEEEEEEEC------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred cccccccccccccccc--c---ceeeecccccceeeeeccc------cccceEEEeecCCCeeeeeeccccceeeeeccc
Confidence 9999855567764322 2 3588899998877644433 35677899999986 677877788888888765
Q ss_pred cEEE-EecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCC
Q 039428 185 QLLS-IIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSP 262 (335)
Q Consensus 185 ~~~~-~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~ 262 (335)
.... .+. ....|..+++++++ .+|++....+.+...+....+ ....+.. + ..|.+++++++
T Consensus 148 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~----~~~~~~~~~~~ 210 (301)
T d1l0qa2 148 KAVINTVS-----------VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDTVKV-E----AAPSGIAVNPE 210 (301)
T ss_dssp TEEEEEEE-----------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEEC-S----SEEEEEEECTT
T ss_pred cceeeecc-----------cCCCceEEEeeccccceeeeccccccccccccccee-eeecccc-c----CCcceeecccc
Confidence 4332 111 12348899999988 899999888888888877763 3333332 2 34899999999
Q ss_pred Cc-EEEEec--CCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe--CCeEEEEecc
Q 039428 263 TK-LVVAGN--PYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK--DGRVYLSHLL 317 (335)
Q Consensus 263 g~-l~va~~--~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~~~ 317 (335)
|. +|++.. ..+.+++++...+ +....+. ....|+++++. +.+|||+...
T Consensus 211 g~~~~v~~~~~~~~~v~v~D~~t~----~~~~~~~--~~~~~~~va~spdg~~l~va~~~ 264 (301)
T d1l0qa2 211 GTKAYVTNVDKYFNTVSMIDTGTN----KITARIP--VGPDPAGIAVTPDGKKVYVALSF 264 (301)
T ss_dssp SSEEEEEEECSSCCEEEEEETTTT----EEEEEEE--CCSSEEEEEECTTSSEEEEEETT
T ss_pred ccccccccccceeeeeeeeecCCC----eEEEEEc--CCCCEEEEEEeCCCCEEEEEECC
Confidence 84 667643 2356888876554 3333442 23458899995 4569997543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.44 E-value=5.5e-11 Score=103.10 Aligned_cols=198 Identities=16% Similarity=0.180 Sum_probs=138.1
Q ss_pred CcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 48 SFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
...|++++++++++.++++ ..+..+..++..+++ ... .+... ..+..+.+++++..++++.. . .
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~----~~~~~~~~~~dg~~~~~~~~-~-~-- 137 (301)
T d1l0qa2 73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT----VAG---TVKTG----KSPLGLALSPDGKKLYVTNN-G-D-- 137 (301)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE----EEE---EEECS----SSEEEEEECTTSSEEEEEET-T-T--
T ss_pred cccccccccccccccccccccccceeeecccccce----eee---ecccc----ccceEEEeecCCCeeeeeec-c-c--
Confidence 4468999999999988887 556788888854333 111 22222 25678999985555666422 2 1
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
..+..++..+++....... ...|..+++++++ .+|++....+.+...+......... .. ...
T Consensus 138 -~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------~~~ 200 (301)
T d1l0qa2 138 -KTVSVINTVTKAVINTVSV------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT----VK------VEA 200 (301)
T ss_dssp -TEEEEEETTTTEEEEEEEC------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE----EE------CSS
T ss_pred -cceeeeeccccceeeeccc------CCCceEEEeeccccceeeecccccccccccccceeeeec----cc------ccC
Confidence 3588899988876644332 3567889999986 4888888878887777765543311 11 123
Q ss_pred ccCeEEEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcC
Q 039428 206 GLNGIVYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESS 281 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~ 281 (335)
.|++++++++| .+|++... .++|+++|+...+ ....+.. + ..|.+++++++|+ |||++..++.+.+++..
T Consensus 201 ~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~-~~~~~~~-~----~~~~~va~spdg~~l~va~~~~~~i~v~D~~ 274 (301)
T d1l0qa2 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-ITARIPV-G----PDPAGIAVTPDGKKVYVALSFCNTVSVIDTA 274 (301)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE-EEEEEEC-C----SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CcceeeccccccccccccccceeeeeeeeecCCCe-EEEEEcC-C----CCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence 58999999999 78887644 5789999998874 4455554 2 2489999999996 88998767889999876
Q ss_pred CC
Q 039428 282 DG 283 (335)
Q Consensus 282 ~~ 283 (335)
.+
T Consensus 275 t~ 276 (301)
T d1l0qa2 275 TN 276 (301)
T ss_dssp TT
T ss_pred CC
Confidence 65
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=3.1e-10 Score=99.79 Aligned_cols=249 Identities=10% Similarity=0.063 Sum_probs=148.2
Q ss_pred CCcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 47 PSFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
..-.|.+++++|+|+.+|++ ..+++|..|+...... ..+ ...... .+..|.++++++++..||+++ ...
T Consensus 35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~---~~~---~~~~~~-~~~~p~~l~~spDg~~l~v~~--~~~- 104 (333)
T d1ri6a_ 35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG---ALT---FAAESA-LPGSLTHISTDHQGQFVFVGS--YNA- 104 (333)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC---CEE---EEEEEE-CSSCCSEEEECTTSSEEEEEE--TTT-
T ss_pred CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC---cEE---Eeeecc-cCCCceEEEEcCCCCEEeecc--cCC-
Confidence 34568999999999988888 5578887765322221 011 211111 124688999998666788853 222
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCc--EEEEecCCccccccccc
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQ--LLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~--~~~~~~~~~~~~~~~~~ 202 (335)
..+..++.+........... .....|.++.++++|+ +|+++.....|..++.... ...... ... ...
T Consensus 105 --~~v~~~~~~~~~~~~~~~~~---~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~----~~~ 174 (333)
T d1ri6a_ 105 --GNVSVTRLEDGLPVGVVDVV---EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP-AEV----TTV 174 (333)
T ss_dssp --TEEEEEEEETTEEEEEEEEE---CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE-EEE----ECS
T ss_pred --Cceeeeccccccceeccccc---CCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeec-eee----eee
Confidence 34777776665544322221 1146788999999986 7888888888888776432 221110 001 112
Q ss_pred cccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCce---eEEEEeccC--CcCCCCCCeEEEcCCCc-EEEEecCCCeE
Q 039428 203 NVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEE---EVKLIELRG--GSSLSLGDGLALLSPTK-LVVAGNPYPSA 275 (335)
Q Consensus 203 ~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~---~~~~~~~~g--~~~~~~pdGia~d~~g~-l~va~~~~~~~ 275 (335)
....|..+++++++ .+|++....+.....+...... ....+.... ......|.++++.++++ +|+++...+.+
T Consensus 175 ~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~ 254 (333)
T d1ri6a_ 175 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLI 254 (333)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred cCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeE
Confidence 33458899999998 8888888888776666554311 122222111 11134577889999985 77776655677
Q ss_pred EEEEcCCCcEEEEEeeeecCCCCCcceEEEEe--CCeEEEEecc
Q 039428 276 RLVESSDGWETASVVAKFNGPTHRVATAATVK--DGRVYLSHLL 317 (335)
Q Consensus 276 ~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~~~ 317 (335)
.++....+....+..... +....|.++++. +..|||+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~--~~~~~p~~~a~spDGk~l~va~~~ 296 (333)
T d1ri6a_ 255 TVFSVSEDGSVLSKEGFQ--PTETQPRGFNVDHSGKYLIAAGQK 296 (333)
T ss_dssp EEEEECTTSCCEEEEEEE--ECSSSCCCEEECTTSSEEEEECTT
T ss_pred EEEEEcCCCCEEEEEEEe--CCCCCeeEEEEeCCCCEEEEEECC
Confidence 776665442222333222 233457889995 4558886543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.36 E-value=3.7e-11 Score=109.68 Aligned_cols=263 Identities=12% Similarity=0.034 Sum_probs=148.3
Q ss_pred CCCceeEEEcC-----CCcceeeeEEcCCCCEEEEEec-CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEe
Q 039428 36 KPATHVYQYHS-----PSFLCETAKWDDVGRRFLVSFL-DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVD 109 (335)
Q Consensus 36 d~~~~~~~~~~-----~~~~pegia~d~~g~~~~~~~~-~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d 109 (335)
|..+.++.+.. ....|..++++++++.+|+... .-..+.++. ++.. .. ....+ .+..|..++++
T Consensus 22 d~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~-~~~~----~~---~~~~~--~~~~p~~v~~~ 91 (365)
T d1jofa_ 22 DDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKS-PTEI----VH---EASHP--IGGHPRANDAD 91 (365)
T ss_dssp ETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEE-TTEE----EE---EEEEE--CCSSGGGGCTT
T ss_pred cCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeC-CCCe----EE---Eeeec--CCCCcEEEEEC
Confidence 55555555421 1223567999999999888833 234566663 3431 11 11112 12468888998
Q ss_pred CCCCeEEEEEecCCCCccceEEEEEC--CCC-----------eEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCC
Q 039428 110 RPRNRLLVAFTDVLGNKYSALAAYDL--STW-----------KRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSS 175 (335)
Q Consensus 110 ~~~g~l~v~~~D~~~~~~~~v~~~d~--~~~-----------~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~ 175 (335)
+++..+|++++..... .+..+.. .++ +......- ...+....|.+++++|||+ +|++|...+
T Consensus 92 ~~~~~~~v~~a~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q~~~h~h~v~~sPdG~~l~v~d~g~d 167 (365)
T d1jofa_ 92 TNTRAIFLLAAKQPPY---AVYANPFYKFAGYGNVFSVSETGKLEKNVQN-YEYQENTGIHGMVFDPTETYLYSADLTAN 167 (365)
T ss_dssp SCCEEEEEEECSSTTC---CEEEEEESSSCCEEEEEEECTTCCEEEEEEE-EECCTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred CCCCEEEEEEecCCCC---EEEEeEccCCCCcceeEeeeecceecCcccC-cccCCCCcceEEEECCCCCEEEEeeCCCC
Confidence 7566678876544322 2443322 111 11100000 0011245688999999996 999999999
Q ss_pred eEEEEcc--CCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCce----eEEEEeccCC
Q 039428 176 KIWKVGV--EGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEE----EVKLIELRGG 248 (335)
Q Consensus 176 ~I~~~d~--~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~----~~~~~~~~g~ 248 (335)
+|++++. +|+.... .. ... .....+|.+++++|+| .+|+++..+++|.+++.+..+. ....+.....
T Consensus 168 ~v~~~~~~~~g~~~~~-~~--~~~---~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~ 241 (365)
T d1jofa_ 168 KLWTHRKLASGEVELV-GS--VDA---PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EEEEEEECTTSCEEEE-EE--EEC---SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EEEEEEccCCCceeec-cc--eee---cCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccc
Confidence 9988754 3444321 10 110 1124579999999999 8999999999999998876531 1122221100
Q ss_pred ----------cCCCCCCeEEEcCCCc-EEEEecCCC-----eEEEEEcCCCcEEEEEeeeec-CCCCCcceEEEEe---C
Q 039428 249 ----------SSLSLGDGLALLSPTK-LVVAGNPYP-----SARLVESSDGWETASVVAKFN-GPTHRVATAATVK---D 308 (335)
Q Consensus 249 ----------~~~~~pdGia~d~~g~-l~va~~~~~-----~~~v~~~~~~~~~~~~~~~~~-~p~~~~Pt~va~~---~ 308 (335)
.....+..++++++|+ ||+++.+.+ .+..++.+......+...... ...+..|.++++. +
T Consensus 242 ~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G 321 (365)
T d1jofa_ 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred cccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCC
Confidence 0012356899999985 888864322 255565544322222221111 1235567788884 3
Q ss_pred CeEEEEeccC
Q 039428 309 GRVYLSHLLG 318 (335)
Q Consensus 309 g~lyV~~~~~ 318 (335)
..|||+...+
T Consensus 322 ~~l~va~~~s 331 (365)
T d1jofa_ 322 EWMAITDDQE 331 (365)
T ss_dssp TEEEEECSSS
T ss_pred CEEEEEeCCC
Confidence 4599976543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.34 E-value=1.2e-10 Score=106.29 Aligned_cols=245 Identities=13% Similarity=0.047 Sum_probs=137.6
Q ss_pred CcceeeeEEcCCCCEEEEE---ecCCeEEEEECC-CCCCCcce--------eeeeEEeecCCcCCCCcceEEEeCCCCeE
Q 039428 48 SFLCETAKWDDVGRRFLVS---FLDGGVGQVLVP-DEYSPGTV--------LEEVKLVKEDDVVGNATMGIAVDRPRNRL 115 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~---~~~~~I~~~d~~-~g~~~~~v--------~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l 115 (335)
+..|..++++++++..|+. ...++|+.+... .+.. ..+ ++. .........+..++++.++|++..+
T Consensus 82 ~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~q~~~h~h~v~~sPdG~~l 159 (365)
T d1jofa_ 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY-GNVFSVSETGKLEK-NVQNYEYQENTGIHGMVFDPTETYL 159 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE-EEEEEECTTCCEEE-EEEEEECCTTCCEEEEEECTTSSEE
T ss_pred CCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCc-ceeEeeeecceecC-cccCcccCCCCcceEEEECCCCCEE
Confidence 3468899999999865554 234556554311 1110 000 000 0000000112357999999966679
Q ss_pred EEEEecCCCCccceEEEEECC-CCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcE---EEEe
Q 039428 116 LVAFTDVLGNKYSALAAYDLS-TWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQL---LSII 190 (335)
Q Consensus 116 ~v~~~D~~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~---~~~~ 190 (335)
|++ |...+ .|++|+.. .+.+........... ...|..++++|+|+ +||++...++|.+++.+.+. ....
T Consensus 160 ~v~--d~g~d---~v~~~~~~~~g~~~~~~~~~~~~~-g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~ 233 (365)
T d1jofa_ 160 YSA--DLTAN---KLWTHRKLASGEVELVGSVDAPDP-GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTH 233 (365)
T ss_dssp EEE--ETTTT---EEEEEEECTTSCEEEEEEEECSST-TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred EEe--eCCCC---EEEEEEccCCCceeeccceeecCC-CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEe
Confidence 884 54443 47777643 344432221111111 46899999999996 99999999999888875431 1111
Q ss_pred cCCcccc-------ccccccccccCeEEEccCC-eEEEEECCCC-----EEEEEeCCCCceeEEE---EeccCCcCCCCC
Q 039428 191 RSPLFTA-------KEWYKNVFGLNGIVYHPDG-FLIVIHMCSG-----NLFKIDIRKEEEEVKL---IELRGGSSLSLG 254 (335)
Q Consensus 191 ~~~~~~~-------~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~-----~v~~~d~~~~~~~~~~---~~~~g~~~~~~p 254 (335)
....+.. +........+..|+++||| +||+++...+ .|..++.+..+...+. ..... .-..|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~--~G~~p 311 (365)
T d1jofa_ 234 HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHS 311 (365)
T ss_dssp EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTC
T ss_pred eeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEc--CCCCc
Confidence 1100000 0011223357789999999 9999987543 3766665543211111 11111 12459
Q ss_pred CeEEEcC-CCc-EEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEE
Q 039428 255 DGLALLS-PTK-LVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAA 304 (335)
Q Consensus 255 dGia~d~-~g~-l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~v 304 (335)
.++++++ +|+ |||++..++.+.|++.+++ ..+....+..|...+|.++
T Consensus 312 ~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~--~l~~~~~~~vp~p~~~~~~ 361 (365)
T d1jofa_ 312 NAVSPCPWSDEWMAITDDQEGWLEIYRWKDE--FLHRVARVRIPEPGFGMNA 361 (365)
T ss_dssp CCEEECTTCTTEEEEECSSSCEEEEEEEETT--EEEEEEEEECCSTTEEEEE
T ss_pred cEEEecCCCCCEEEEEeCCCCeEEEEEEeCC--cCcEEEEEECCCCCCCeEE
Confidence 9999997 675 9999887888999886554 2333444545554444443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=8.7e-10 Score=96.86 Aligned_cols=240 Identities=12% Similarity=0.067 Sum_probs=137.0
Q ss_pred CcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 48 SFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
...|.+++++|+|+.+++. ..+++|..++..... ... ...... ....++++.+++++..++++. ...
T Consensus 82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~-----~~~--~~~~~~-~~~~~~~v~~s~d~~~~~~~~--~~~-- 149 (333)
T d1ri6a_ 82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-----PVG--VVDVVE-GLDGCHSANISPDNRTLWVPA--LKQ-- 149 (333)
T ss_dssp SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-----EEE--EEEEEC-CCTTBCCCEECTTSSEEEEEE--GGG--
T ss_pred CCCceEEEEcCCCCEEeecccCCCceeeecccccc-----cee--cccccC-CCccceEEEeeecceeeeccc--ccc--
Confidence 4468999999999988888 556777777633222 111 111111 113678999998656666643 222
Q ss_pred cceEEEEECCCCeEE--EEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEc--cCCcEEEEecCCcccccccc
Q 039428 127 YSALAAYDLSTWKRL--FLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVG--VEGQLLSIIRSPLFTAKEWY 201 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d--~~g~~~~~~~~~~~~~~~~~ 201 (335)
..+..++....... ........ .....|..+++++++. +|+++...+.....+ ............. ..+...
T Consensus 150 -~~i~~~~~~~~~~~~~~~~~~~~~-~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~ 226 (333)
T d1ri6a_ 150 -DRICLFTVSDDGHLVAQDPAEVTT-VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD-MMPENF 226 (333)
T ss_dssp -TEEEEEEECTTSCEEEEEEEEEEC-STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE-CSCTTC
T ss_pred -ceeeEEEeccCCcceeeeceeeee-ecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeee-eeecCC
Confidence 35778886654221 11111011 1146788999999975 777777666655544 3332221110000 001111
Q ss_pred ccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEE
Q 039428 202 KNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVE 279 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~ 279 (335)
.....+.++++++|+ ++|++....+.+..++.+............. . ...|.+++++|+|+ |||++..++.+++++
T Consensus 227 ~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~p~~~a~spDGk~l~va~~~~~~v~v~~ 304 (333)
T d1ri6a_ 227 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-T-ETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304 (333)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-C-SSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred CccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeC-C-CCCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 223457889999999 8999998888776666554321223222111 1 14599999999997 788876668888875
Q ss_pred cCCC-cEEEEEeeeecCCCCCcceEEEEe
Q 039428 280 SSDG-WETASVVAKFNGPTHRVATAATVK 307 (335)
Q Consensus 280 ~~~~-~~~~~~~~~~~~p~~~~Pt~va~~ 307 (335)
.+.. .+ .+..+++. .+..|..|++.
T Consensus 305 id~~tG~-l~~~~~~~--~g~~p~~v~~~ 330 (333)
T d1ri6a_ 305 IVGEQGL-LHEKGRYA--VGQGPMWVVVN 330 (333)
T ss_dssp EETTTTE-EEEEEEEE--CSSSCCEEEEE
T ss_pred EECCCCc-EEEEEecc--CCCCCcEEEEE
Confidence 5432 22 23344443 34457777763
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.29 E-value=5.7e-10 Score=103.80 Aligned_cols=208 Identities=15% Similarity=0.063 Sum_probs=132.1
Q ss_pred eeeeEEcCC-CCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 51 CETAKWDDV-GRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 51 pegia~d~~-g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
|..+..+.+ .++++++ ..+++|..||..+++ ++. .+.. +..|++++++|++..+|+++.| +
T Consensus 21 ~~~~~~~~~~~~~~~v~~~d~g~v~v~D~~t~~----v~~---~~~~----g~~~~~v~fSpDG~~l~~~s~d------g 83 (432)
T d1qksa2 21 PTQQMNDWDLENLFSVTLRDAGQIALIDGSTYE----IKT---VLDT----GYAVHISRLSASGRYLFVIGRD------G 83 (432)
T ss_dssp CSSCCSCCCGGGEEEEEETTTTEEEEEETTTCC----EEE---EEEC----SSCEEEEEECTTSCEEEEEETT------S
T ss_pred CCceeecCCCCcEEEEEEcCCCEEEEEECCCCc----EEE---EEeC----CCCeeEEEECCCCCEEEEEcCC------C
Confidence 433333333 3577677 778999999975554 233 2222 2468999999976778876443 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCce----eECCCCc-EEEEeCCCCeEEEEccCCc-EEEEecCCccccc-ccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDI----AVDAEGN-AYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAK-EWY 201 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~----~vd~~G~-lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~-~~~ 201 (335)
.|.+||.++++......+.. ...|.++ +++|||+ +|++.+..+.|..+|.++. ....+........ ...
T Consensus 84 ~v~~~d~~t~~~~~~~~i~~----~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~ 159 (432)
T d1qksa2 84 KVNMIDLWMKEPTTVAEIKI----GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 159 (432)
T ss_dssp EEEEEETTSSSCCEEEEEEC----CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred CEEEEEeeCCCceEEEEEec----CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceec
Confidence 59999998765322222210 2234444 4567896 7899999999999998743 3333221100000 001
Q ss_pred ccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEE
Q 039428 202 KNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVE 279 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~ 279 (335)
.....+.++++++|| .++++....++|..++....+ ..+...+..+ ..|.+++++++|+ +|+++..++.+.+++
T Consensus 160 ~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~-~~~~~~i~~g---~~~~~~~~spdg~~~~va~~~~~~v~v~d 235 (432)
T d1qksa2 160 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN-NLKTTEISAE---RFLHDGGLDGSHRYFITAANARNKLVVID 235 (432)
T ss_dssp ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS-EEEEEEEECC---SSEEEEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred cCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCC-cceEEEEccc---CccccceECCCCCEEEEeccccceEEEee
Confidence 112236678999999 888999999999999988764 3333333221 3489999999996 777776667788887
Q ss_pred cCCC
Q 039428 280 SSDG 283 (335)
Q Consensus 280 ~~~~ 283 (335)
....
T Consensus 236 ~~~~ 239 (432)
T d1qksa2 236 TKEG 239 (432)
T ss_dssp TTTT
T ss_pred cccc
Confidence 6554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.23 E-value=9.6e-10 Score=99.31 Aligned_cols=231 Identities=11% Similarity=-0.013 Sum_probs=134.0
Q ss_pred eeEEcCCCCEEEEEec----------CCeEEEEECCCCCCCcceeeeeEEeecCC----cCCCCcceEEEeCCCCeEEEE
Q 039428 53 TAKWDDVGRRFLVSFL----------DGGVGQVLVPDEYSPGTVLEEVKLVKEDD----VVGNATMGIAVDRPRNRLLVA 118 (335)
Q Consensus 53 gia~d~~g~~~~~~~~----------~~~I~~~d~~~g~~~~~v~~~~~~~~~~~----~~~~~p~Gi~~d~~~g~l~v~ 118 (335)
+++++++|+.+++... ++.|..||..+++ ++. .+..|. ..+..|.++++++++..||++
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~----~~~---~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va 141 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL----PIA---DIELPDAPRFSVGPRVHIIGNCASSACLLFF 141 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC----EEE---EEEETTSCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCc----Eee---eecCCccceecccCCccceEECCCCCEEEEE
Confidence 7999999997777621 3569999965444 122 122221 123568899999977789996
Q ss_pred EecCCCCccceEEEEECCCCeEEEEeecCCCcc--CCCCCCceeECCCCcEEEEeC------------------------
Q 039428 119 FTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSE--EKSTADDIAVDAEGNAYVTDV------------------------ 172 (335)
Q Consensus 119 ~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~p~~~~vd~~G~lyV~d~------------------------ 172 (335)
+.+. +.+..+|+++++.......+.... ......-+++.+||.+++.+.
T Consensus 142 ~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (368)
T d1mdah_ 142 LFGS-----SAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA 216 (368)
T ss_dssp ECSS-----SCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred eCCC-----CeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceee
Confidence 5432 358899999888764443321100 001112244445554322211
Q ss_pred ------------CCCeEEEEccCCcEEEEecCCcccccc---ccccccccCeEEEccCC-eEEEEECC--------CCEE
Q 039428 173 ------------VSSKIWKVGVEGQLLSIIRSPLFTAKE---WYKNVFGLNGIVYHPDG-FLIVIHMC--------SGNL 228 (335)
Q Consensus 173 ------------~~~~I~~~d~~g~~~~~~~~~~~~~~~---~~~~~~~p~Gia~~~dg-~Lyvad~~--------~~~v 228 (335)
..++++.++.++.....+......... ......++..+++++++ .+|++... .++|
T Consensus 217 ~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v 296 (368)
T d1mdah_ 217 AQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT 296 (368)
T ss_dssp EEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred cccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceE
Confidence 123344444433222221110000000 00112346789999988 88887543 2579
Q ss_pred EEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc--EEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEE
Q 039428 229 FKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK--LVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATV 306 (335)
Q Consensus 229 ~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~--l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~ 306 (335)
+++|..+++ ....+... ..|+++++.+||+ +|+++...+.++|++...+ +.+..+. ....|+++++
T Consensus 297 ~v~D~~t~~-~~~~~~~~-----~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg----k~~~~i~--~g~~P~~l~~ 364 (368)
T d1mdah_ 297 SSVTASVGQ-TSGPISNG-----HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD----QDQSSVE--LDKGPESLSV 364 (368)
T ss_dssp EEEESSSCC-EEECCEEE-----EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC----EEEEECC--CCSCCCEEEC
T ss_pred EEEECCCCc-EeEEecCC-----CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC----CEEEEEE--CCCCCCEEEE
Confidence 999999875 44444432 2388999999985 7888776688999987655 4455553 3456889988
Q ss_pred e
Q 039428 307 K 307 (335)
Q Consensus 307 ~ 307 (335)
.
T Consensus 365 ~ 365 (368)
T d1mdah_ 365 Q 365 (368)
T ss_dssp C
T ss_pred e
Confidence 5
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.20 E-value=3.8e-09 Score=93.70 Aligned_cols=257 Identities=12% Similarity=0.015 Sum_probs=138.2
Q ss_pred hhhhcCCCceeEEEc-CCCcceeeeEEcCCCCEEEEE-e---------cCCeEEEEECCCCCCCcceeeeeEEeecCC-c
Q 039428 31 AIAMAKPATHVYQYH-SPSFLCETAKWDDVGRRFLVS-F---------LDGGVGQVLVPDEYSPGTVLEEVKLVKEDD-V 98 (335)
Q Consensus 31 ~~~~~d~~~~~~~~~-~~~~~pegia~d~~g~~~~~~-~---------~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~-~ 98 (335)
.+++.|..+.++.-. ..+..| +++|+|+|+.+|+. . .++.|..||..+++ ++.+......+. .
T Consensus 29 ~v~v~D~~tg~~~~~~~~g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~----~~~~~~~~~~~~~~ 103 (355)
T d2bbkh_ 29 QQFVIDGEAGRVIGMIDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL----PTADIELPDAPRFL 103 (355)
T ss_dssp EEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC----EEEEEEETTCCCCC
T ss_pred eEEEEECCCCcEEEEEECCCCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC----EEEEEecCCcceee
Confidence 355555555432221 112234 79999999977765 2 24679999975554 222211111111 1
Q ss_pred CCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCcc--CCCCCCceeECCCCc-EEE------
Q 039428 99 VGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSE--EKSTADDIAVDAEGN-AYV------ 169 (335)
Q Consensus 99 ~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~p~~~~vd~~G~-lyV------ 169 (335)
.+..|.+++++++++.+++++... . ..+..+|..+++............ .......+++.++|. +++
T Consensus 104 ~~~~~~~~~~s~dg~~~~v~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~ 179 (355)
T d2bbkh_ 104 VGTYPWMTSLTPDGKTLLFYQFSP--A--PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 179 (355)
T ss_dssp BSCCGGGEEECTTSSEEEEEECSS--S--CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSS
T ss_pred cCCCCceEEEecCCCeeEEecCCC--C--ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCC
Confidence 234688999998777888864322 1 347777887776543222211000 001112233334432 222
Q ss_pred -------------------------------EeCCCCeEEEEccCCcEEEEecCCcccccc---ccccccccCeEEEccC
Q 039428 170 -------------------------------TDVVSSKIWKVGVEGQLLSIIRSPLFTAKE---WYKNVFGLNGIVYHPD 215 (335)
Q Consensus 170 -------------------------------~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~---~~~~~~~p~Gia~~~d 215 (335)
..+..+++++++.++.....+......... ......+...++++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d 259 (355)
T d2bbkh_ 180 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 259 (355)
T ss_dssp CCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT
T ss_pred eEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCC
Confidence 223345555555543322221110000000 0001123567999999
Q ss_pred C-eEEEEECC---------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc--EEEEecCCCeEEEEEcCCC
Q 039428 216 G-FLIVIHMC---------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK--LVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 216 g-~Lyvad~~---------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~--l~va~~~~~~~~v~~~~~~ 283 (335)
+ .+|++... .+.|..+|....+ .+..+.... .|.++++.+||+ +|+++...+.++|++...+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~-~~~~~~~~~-----~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg 333 (355)
T d2bbkh_ 260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE-RLAKFEMGH-----EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 333 (355)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCC-EEEEEEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CCeEEEEeccCCceeecCCCCeEEEEeCCCCc-EEEEecCCC-----CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC
Confidence 9 77876543 2579999998875 555565422 378999999986 6777666688999987665
Q ss_pred cEEEEEeeeecCCCCCcceEEEEe
Q 039428 284 WETASVVAKFNGPTHRVATAATVK 307 (335)
Q Consensus 284 ~~~~~~~~~~~~p~~~~Pt~va~~ 307 (335)
+.+.++.. .+..|+.+++.
T Consensus 334 ----~~~~~i~~-~G~~p~~i~~~ 352 (355)
T d2bbkh_ 334 ----EELRSVNQ-LGHGPQVITTA 352 (355)
T ss_dssp ----CEEEEECC-CCSSCCEEECC
T ss_pred ----CEEEEEeC-cCCCccEEEeC
Confidence 33444432 24557787763
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.16 E-value=3.9e-08 Score=85.65 Aligned_cols=231 Identities=11% Similarity=0.005 Sum_probs=139.6
Q ss_pred hhhhhhcCCCcee----EEEcCCCcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCc
Q 039428 29 ELAIAMAKPATHV----YQYHSPSFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNAT 103 (335)
Q Consensus 29 ~~~~~~~d~~~~~----~~~~~~~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p 103 (335)
++.+.+.|..+.+ +.++.....|.+++++|+|+.+|++ ..++.|.+||..+++ ++... ....+...+..+
T Consensus 10 d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~----~~~~~-~~~~~~~~~~~~ 84 (337)
T d1pbyb_ 10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE----TLGRI-DLSTPEERVKSL 84 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC----EEEEE-ECCBTTEEEECT
T ss_pred CCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc----EEEEE-ecCCCcccccce
Confidence 3456666666543 3334455679999999999988776 668999999976555 22211 111111112457
Q ss_pred ceEEEeCCCCeEEEEEecCCC------CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCe
Q 039428 104 MGIAVDRPRNRLLVAFTDVLG------NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSK 176 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~------~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~ 176 (335)
.+++++++.+.+|++..+... .....+..+|..+++....... ...+.+++++++|+ +|+++ +.
T Consensus 85 ~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~---~~ 155 (337)
T d1pbyb_ 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------PRQITMLAWARDGSKLYGLG---RD 155 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC------CSSCCCEEECTTSSCEEEES---SS
T ss_pred eeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc------cCCceEEEEcCCCCEEEEEc---CC
Confidence 899999877788886533110 0114688899998887755443 35688999999985 77663 33
Q ss_pred EEEEccCCc-EEEEecCCccc-----cc---------------------------------------------------c
Q 039428 177 IWKVGVEGQ-LLSIIRSPLFT-----AK---------------------------------------------------E 199 (335)
Q Consensus 177 I~~~d~~g~-~~~~~~~~~~~-----~~---------------------------------------------------~ 199 (335)
+..+|.... ....+...... .+ .
T Consensus 156 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (337)
T d1pbyb_ 156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235 (337)
T ss_dssp EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE
Confidence 455555432 22111100000 00 0
Q ss_pred ccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEE
Q 039428 200 WYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARL 277 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v 277 (335)
..+....+..+++++++ .+|.++ +.|.++|+...+ ....+... ..|.++++.++|+ ||+++. .+.++|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~---~~i~v~d~~~~~-~~~~~~~~-----~~~~~~~~s~dG~~l~v~~~-~~~i~v 305 (337)
T d1pbyb_ 236 VRIMDVFYFSTAVNPAKTRAFGAY---NVLESFDLEKNA-SIKRVPLP-----HSYYSVNVSTDGSTVWLGGA-LGDLAA 305 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEE---SEEEEEETTTTE-EEEEEECS-----SCCCEEEECTTSCEEEEESB-SSEEEE
T ss_pred ecCCCcceEEEEecccceEEEEcc---ccEEEEECCCCc-EEEEEcCC-----CCEEEEEECCCCCEEEEEeC-CCcEEE
Confidence 01112234455677777 556554 678999998874 45555542 2489999999995 777754 367899
Q ss_pred EEcCCC
Q 039428 278 VESSDG 283 (335)
Q Consensus 278 ~~~~~~ 283 (335)
++....
T Consensus 306 ~D~~t~ 311 (337)
T d1pbyb_ 306 YDAETL 311 (337)
T ss_dssp EETTTC
T ss_pred EECCCC
Confidence 887654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.14 E-value=2.9e-08 Score=86.48 Aligned_cols=147 Identities=15% Similarity=0.102 Sum_probs=92.8
Q ss_pred EEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEE
Q 039428 63 FLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRL 141 (335)
Q Consensus 63 ~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~ 141 (335)
|+++ ..+++|.+||..+++ ++. .+..+. .+..|.+++++|++..+||+.. .. +.|.+||.++++.+
T Consensus 3 ~~vt~~~d~~v~v~D~~s~~----~~~---~i~~~~-~~~~~~~i~~spDg~~l~v~~~--~~---~~v~v~D~~t~~~~ 69 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKMA----VDK---VITIAD-AGPTPMVPMVAPGGRIAYATVN--KS---ESLVKIDLVTGETL 69 (337)
T ss_dssp EEEEEETTTEEEEEETTTTE----EEE---EEECTT-CTTCCCCEEECTTSSEEEEEET--TT---TEEEEEETTTCCEE
T ss_pred EEEEEcCCCEEEEEECCCCe----EEE---EEECCC-CCCCccEEEECCCCCEEEEEEC--CC---CeEEEEECCCCcEE
Confidence 4455 778999999975444 232 232332 2246889999985556788532 22 46999999999887
Q ss_pred EEeecCCCccCCCCCCceeECCCCc-EEEEeC-----------CCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 142 FLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV-----------VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 142 ~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~-----------~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
..............+.+++++++|+ +|++.. ....+..+|........ .+. ....+++
T Consensus 70 ~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~------~~~~~~~ 139 (337)
T d1pbyb_ 70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK----AFE------APRQITM 139 (337)
T ss_dssp EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE----EEE------CCSSCCC
T ss_pred EEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEE----ecc------ccCCceE
Confidence 6555433222246788999999985 777643 24567777766443321 111 1234889
Q ss_pred EEEccCC-eEEEEECCCCEEEEEeCCC
Q 039428 210 IVYHPDG-FLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 210 ia~~~dg-~Lyvad~~~~~v~~~d~~~ 235 (335)
+++++|| ++|+++. .+..+|...
T Consensus 140 ~~~s~dg~~l~~~~~---~~~~~d~~~ 163 (337)
T d1pbyb_ 140 LAWARDGSKLYGLGR---DLHVMDPEA 163 (337)
T ss_dssp EEECTTSSCEEEESS---SEEEEETTT
T ss_pred EEEcCCCCEEEEEcC---Ccceeeeec
Confidence 9999999 7877642 244455544
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.12 E-value=1.9e-08 Score=88.09 Aligned_cols=105 Identities=17% Similarity=0.125 Sum_probs=73.5
Q ss_pred eeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 53 TAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 53 gia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
|+|++++++.+++...+++|.+||..+++ ++. .+..+. +..|.+++++|++..+||++.. . +.|..
T Consensus 1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~----~~~---t~~~~~--~~~p~~l~~spDG~~l~v~~~~--~---~~v~~ 66 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTNYPNNLHVVDVASDT----VYK---SCVMPD--KFGPGTAMMAPDNRTAYVLNNH--Y---GDIYG 66 (346)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTE----EEE---EEECSS--CCSSCEEEECTTSSEEEEEETT--T---TEEEE
T ss_pred CccCCCCCcEEEEEcCCCEEEEEECCCCC----EEE---EEEcCC--CCCcceEEECCCCCEEEEEECC--C---CcEEE
Confidence 67899998888777888999999975443 232 223332 2368899999865678885422 2 46999
Q ss_pred EECCCCeEEEEeecCCC-ccCCCCCCceeECCCCc-EEEEe
Q 039428 133 YDLSTWKRLFLTQLSGK-SEEKSTADDIAVDAEGN-AYVTD 171 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~-~~~~~~p~~~~vd~~G~-lyV~d 171 (335)
||+.+++.......... ......|.++++++||+ +|+++
T Consensus 67 ~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~ 107 (346)
T d1jmxb_ 67 IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV 107 (346)
T ss_dssp EETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred EeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEe
Confidence 99999988755544221 11135789999999985 88875
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=99.05 E-value=1.4e-07 Score=87.99 Aligned_cols=174 Identities=14% Similarity=0.206 Sum_probs=103.0
Q ss_pred CCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC----C-CCcceEEEeCC---CCeEEEE
Q 039428 47 PSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV----G-NATMGIAVDRP---RNRLLVA 118 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~----~-~~p~Gi~~d~~---~g~l~v~ 118 (335)
.-..|.+++|.++|++|++....|+|++++..++. ..+ +...+... + ....||++||+ ++.+|++
T Consensus 25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~-----~~~--i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvs 97 (450)
T d1crua_ 25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGS-----VKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (450)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----EEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCc-----Eee--cccCCccccccCCCCceeeEEeCCCCccCCEEEEE
Confidence 34589999999999988777667999999854443 121 22222211 1 34578999973 6889996
Q ss_pred EecCC-------CCccceEEEEECCC--CeEE----EEeecCCCccCCCCCCceeECCCCcEEEEeCC------------
Q 039428 119 FTDVL-------GNKYSALAAYDLST--WKRL----FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV------------ 173 (335)
Q Consensus 119 ~~D~~-------~~~~~~v~~~d~~~--~~~~----~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~------------ 173 (335)
..... ......+.++..+. .... .....+ ....+.-..|++++||.|||+-..
T Consensus 98 yt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p--~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~~ 175 (450)
T d1crua_ 98 GTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP--SSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLP 175 (450)
T ss_dssp EEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC--CCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSC
T ss_pred EecCCCCCcccccccceEEEeeecccccccccceEEEeeccc--ccccccccceeEcCCCCEEEEecCCCcccccccccc
Confidence 42110 01112344444332 2211 111221 122355668999999999998421
Q ss_pred --------------------CCeEEEEccCCcEEEEecCCccc--ccc-ccccccccCeEEEccCCeEEEEECCC---CE
Q 039428 174 --------------------SSKIWKVGVEGQLLSIIRSPLFT--AKE-WYKNVFGLNGIVYHPDGFLIVIHMCS---GN 227 (335)
Q Consensus 174 --------------------~~~I~~~d~~g~~~~~~~~~~~~--~~~-~~~~~~~p~Gia~~~dg~Lyvad~~~---~~ 227 (335)
.+.|.|++++++... .++.+. .++ ....+.+|.|++++|+|.||++|.+. ..
T Consensus 176 ~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~--dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~l~~~e~G~~~~dE 253 (450)
T d1crua_ 176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPK--DNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGPNSDDE 253 (450)
T ss_dssp CCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCT--TCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEECSSSCEE
T ss_pred cccccCcccccccccccccccCceEEeeccccccc--cccccccccceEEEeccccccceeecccceeeecccccccccc
Confidence 388999999876421 011000 000 12345679999999999999998753 34
Q ss_pred EEEE
Q 039428 228 LFKI 231 (335)
Q Consensus 228 v~~~ 231 (335)
|-++
T Consensus 254 ln~i 257 (450)
T d1crua_ 254 INLI 257 (450)
T ss_dssp EEEC
T ss_pred cccc
Confidence 5555
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.03 E-value=6.1e-08 Score=89.08 Aligned_cols=212 Identities=15% Similarity=0.078 Sum_probs=130.3
Q ss_pred ceeeeEEcCC-CCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 50 LCETAKWDDV-GRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 50 ~pegia~d~~-g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.|..+.++.+ .++++++ ..+++|..||..+++ ++. .+.. +..|++++++|++.++|+++.|
T Consensus 20 ~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~----~~~---~l~~----g~~~~~vafSPDGk~l~~~~~d------ 82 (426)
T d1hzua2 20 RPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKK----IVK---VIDT----GYAVHISRMSASGRYLLVIGRD------ 82 (426)
T ss_dssp SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCS----EEE---EEEC----CSSEEEEEECTTSCEEEEEETT------
T ss_pred CCCcccccCCCCeEEEEEEcCCCEEEEEECCCCc----EEE---EEeC----CCCeeEEEECCCCCEEEEEeCC------
Confidence 4555555555 3566676 678999999975554 233 2222 2368999999966677775433
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcE-EEEecCCccccc-cccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAK-EWYKNV 204 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~-~~~~~~ 204 (335)
+.|.+||.++++......+.......+....+++.|||+ +|++....+.+..+|..... ...+....-... ......
T Consensus 83 ~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (426)
T d1hzua2 83 ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE 162 (426)
T ss_dssp SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred CCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCC
Confidence 359999999886443222211000022333445557886 78988888999999987543 332211100000 000111
Q ss_pred cccCeEEEccCC-eEEEEECCCCEEEEEeCCCCce-eEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcC
Q 039428 205 FGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEE-EVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESS 281 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~-~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~ 281 (335)
.....++.++++ .++++....+++..++...... ....+.. + ..|.+++++++|+ +++++...+.+.+++..
T Consensus 163 ~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~ 237 (426)
T d1hzua2 163 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA-A----PFLADGGWDSSHRYFMTAANNSNKVAVIDSK 237 (426)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEEC-C----SSEEEEEECTTSCEEEEEETTCSEEEEEETT
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEecc-C----CccEeeeECCCCcEEEeeeecccceeeeecc
Confidence 234567888888 8889999999999888776521 2223332 2 3489999999986 66666656777777776
Q ss_pred CC
Q 039428 282 DG 283 (335)
Q Consensus 282 ~~ 283 (335)
++
T Consensus 238 ~~ 239 (426)
T d1hzua2 238 DR 239 (426)
T ss_dssp TT
T ss_pred cc
Confidence 55
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.01 E-value=1.7e-07 Score=86.66 Aligned_cols=195 Identities=14% Similarity=0.060 Sum_probs=125.2
Q ss_pred hhhhhhhhcCCCceeEEE-cCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcce
Q 039428 27 SIELAIAMAKPATHVYQY-HSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMG 105 (335)
Q Consensus 27 ~~~~~~~~~d~~~~~~~~-~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~G 105 (335)
+..+.+.+.|..+.++.- ...+..|++++++|||+.+|+...++.|..||..+++. +.+. .+ +. +..+.+
T Consensus 39 ~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~--~~~~---~i--~~--~~~~~~ 109 (432)
T d1qksa2 39 RDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP--TTVA---EI--KI--GSEARS 109 (432)
T ss_dssp TTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--CEEE---EE--EC--CSEEEE
T ss_pred cCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCc--eEEE---EE--ec--CCCCCC
Confidence 334445555665543221 12345699999999999999887789999999644431 0111 11 11 124567
Q ss_pred EEEe----CCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCc------cCCCCCCceeECCCCc-EEEEeCCC
Q 039428 106 IAVD----RPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKS------EEKSTADDIAVDAEGN-AYVTDVVS 174 (335)
Q Consensus 106 i~~d----~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~------~~~~~p~~~~vd~~G~-lyV~d~~~ 174 (335)
+.++ +++..||+++.+. ..|..||.++++........... .....+..++++++|. +|++....
T Consensus 110 ~~~s~~~SpDG~~l~vs~~~~-----~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~ 184 (432)
T d1qksa2 110 IETSKMEGWEDKYAIAGAYWP-----PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 184 (432)
T ss_dssp EEECCSTTCTTTEEEEEEEET-----TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred eEEecccCCCCCEEEEEcCCC-----CeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC
Confidence 7664 3345688865433 46999999998876443321100 0124455678899985 78888889
Q ss_pred CeEEEEccCC-cEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEec
Q 039428 175 SKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIEL 245 (335)
Q Consensus 175 ~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~ 245 (335)
+.|+.++... +...+.. + +....|++++++||| ++|++....+.+..++....+ ....+..
T Consensus 185 ~~i~~~d~~~~~~~~~~~---i------~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~-~~~~~~~ 247 (432)
T d1qksa2 185 GKILLVDYTDLNNLKTTE---I------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK-LVAIEDT 247 (432)
T ss_dssp TEEEEEETTCSSEEEEEE---E------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE-EEEEEEC
T ss_pred CeEEEEEccCCCcceEEE---E------cccCccccceECCCCCEEEEeccccceEEEeecccce-EEEEecc
Confidence 9999998754 3332210 1 123458999999999 799999999999999998874 4444443
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.00 E-value=1.4e-06 Score=76.33 Aligned_cols=207 Identities=10% Similarity=0.039 Sum_probs=132.2
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
....+++|+|+|+.++++..++.|..||..++.. ... ..+.... .....+++++ ++..+++..+.. . .
T Consensus 59 ~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~---~~~--~~~~~~~---~~v~~v~~s~-d~~~l~~~~~~~-~--~ 126 (311)
T d1nr0a1 59 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH---ILK--TTIPVFS---GPVKDISWDS-ESKRIAAVGEGR-E--R 126 (311)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC---CEE--EEEECSS---SCEEEEEECT-TSCEEEEEECCS-S--C
T ss_pred CCEEEEEEeCCCCeEeccccCceEeeeeeecccc---ccc--ccccccc---Cccccccccc-cccccccccccc-c--c
Confidence 3468899999999887778899999999654442 111 1121111 2567899998 555444433221 1 2
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEE-EecCCccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLS-IIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~-~~~~~~~~~~~~~~~~~~ 206 (335)
.+.++|.++++... .+.. . ....+.++++|+|. ++++.+..+.|..+|.+..... .+.. ....
T Consensus 127 ~~~v~~~~~~~~~~--~l~~--h-~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~----------~~~~ 191 (311)
T d1nr0a1 127 FGHVFLFDTGTSNG--NLTG--Q-ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE----------HTKF 191 (311)
T ss_dssp SEEEEETTTCCBCB--CCCC--C-SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC----------CSSC
T ss_pred cccccccccccccc--cccc--c-ccccccccccccceeeeccccccccccccccccccccccccc----------cccc
Confidence 37778888775542 1211 1 24467899999986 6777778889999998754433 2211 1123
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcC---CCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSS---LSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~---~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
.+.++++|++.++++-...+.|..+|..... ....+....... -.....+++.++|+++++....+.+++.+...+
T Consensus 192 i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~ 270 (311)
T d1nr0a1 192 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGT-KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 270 (311)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ccccccCcccccccccccccccccccccccc-ccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence 6899999999777776778889999988763 333333211000 122457899999988877655577888887654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.93 E-value=6.5e-07 Score=79.57 Aligned_cols=227 Identities=10% Similarity=-0.038 Sum_probs=127.8
Q ss_pred ceeeeEEcCCCCEEEEEe--cCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 50 LCETAKWDDVGRRFLVSF--LDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~--~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.|.++++++++..+++.. .++.+..++....+ ..... ..+.++.+.++...+|++....
T Consensus 126 ~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~----------~~~~~----~~~~~~~~s~~g~~~~v~~~~d----- 186 (373)
T d2madh_ 126 YSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS----------DDQLL----SSPTCYHIHPGAPSTFYLLCAQ----- 186 (373)
T ss_pred CCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe----------EEEEe----ccceeEEEecCCCcEEEEEcCC-----
Confidence 467889999988766652 34566666532222 11111 1456888887666787754322
Q ss_pred ceEEEEECCCCeEEEEeecCC-CccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccc---cccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSG-KSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKE---WYKN 203 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~-~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~---~~~~ 203 (335)
..+.++|..+++......... .......+.....++++ .++..+..++++.++..+............... ....
T Consensus 187 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (373)
T d2madh_ 187 GGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWR 265 (373)
T ss_pred CeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeec
Confidence 358899988876653222111 11112333445555555 344445667777777665433221110000000 0001
Q ss_pred ccccCeEEEccCC-eEEE---------EECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc--EEEEecC
Q 039428 204 VFGLNGIVYHPDG-FLIV---------IHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK--LVVAGNP 271 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyv---------ad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~--l~va~~~ 271 (335)
......+++++++ .+|+ .....+.+.++|...++ .+..+.. + ..|.++++.+||+ ||+++..
T Consensus 266 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~-~~~~~~~-~----~~~~~~a~spDG~~~l~vt~~~ 339 (373)
T d2madh_ 266 PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ-TSSQISL-G----HDVDAISVAQDGGPDLYALSAG 339 (373)
T ss_pred cCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCc-EEEEecC-C----CCeeEEEECCCCCEEEEEEeCC
Confidence 1224556777766 5554 34455778888887764 4455543 2 2489999999986 6777776
Q ss_pred CCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe
Q 039428 272 YPSARLVESSDGWETASVVAKFNGPTHRVATAATVK 307 (335)
Q Consensus 272 ~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~ 307 (335)
.+.++|++...+ +.+..+.. .+..|+.+++.
T Consensus 340 d~~v~v~D~~tg----~~~~~~~~-~g~~P~~l~~~ 370 (373)
T d2madh_ 340 TEVLHIYDAGAG----DQDQSTVE-LGSGPQVLSVM 370 (373)
T ss_pred CCeEEEEECCCC----CEEEEECC-CCCCCcEEEEe
Confidence 688999987655 34444432 24568899885
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.92 E-value=3.9e-08 Score=90.93 Aligned_cols=207 Identities=14% Similarity=0.054 Sum_probs=126.9
Q ss_pred cCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCC-----------
Q 039428 57 DDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLG----------- 124 (335)
Q Consensus 57 d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~----------- 124 (335)
.+||+.+|+. ..+++|.++|..+.+ .. ..+..|. +..|+|++++++..++||++.....
T Consensus 80 tpDGr~lfV~d~~~~rVavIDl~t~k-----~~--~ii~iP~--g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~ 150 (441)
T d1qnia2 80 RYDGKYLFINDKANTRVARIRLDIMK-----TD--KITHIPN--VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFS 150 (441)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTE-----EE--EEEECTT--CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCC
T ss_pred cCCCCEEEEEcCCCCEEEEEECCCCc-----Ee--eEEecCC--CCCccceEEeccCCEEEEEeccCCcccccCcccccc
Confidence 5788888787 778999999975443 22 2334443 2479999999867788987532210
Q ss_pred --CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEc--------------------
Q 039428 125 --NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVG-------------------- 181 (335)
Q Consensus 125 --~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d-------------------- 181 (335)
.+...+..+|..+.++.+.+.. ...|.+++++++|+ +|++......+..++
T Consensus 151 ~~~~~~~~~~iD~~t~~v~~qI~v------~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~ 224 (441)
T d1qnia2 151 LDNSYTMFTAIDAETMDVAWQVIV------DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA 224 (441)
T ss_dssp GGGEEEEEEEEETTTCSEEEEEEE------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHH
T ss_pred cccccceEEeecCccceeeEEEec------CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEE
Confidence 0112356689988887766554 24688999999986 888876543332222
Q ss_pred --cCCcEE--------EEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCc-------eeEEEE
Q 039428 182 --VEGQLL--------SIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEE-------EEVKLI 243 (335)
Q Consensus 182 --~~g~~~--------~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~-------~~~~~~ 243 (335)
++|+.. .+........-...+....|+|++++||| ++|+++..++.|.++|.+.-+ .....+
T Consensus 225 ~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~ 304 (441)
T d1qnia2 225 AVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTI 304 (441)
T ss_dssp HHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGE
T ss_pred EecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEE
Confidence 122211 11100000000023456779999999999 899999999999999976520 000111
Q ss_pred eccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 244 ELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 244 ~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
....+. --+|-..++|++|+.|.+..-+..+....
T Consensus 305 ~~~~~~-glgplh~~fd~~g~~yts~~~ds~v~kw~ 339 (441)
T d1qnia2 305 VAEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVCKWN 339 (441)
T ss_dssp EECCBC-CSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred Eeeccc-ccCcccceecCCceEEEcccccceEEEec
Confidence 111111 12477789999999999966444454443
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=9e-07 Score=78.00 Aligned_cols=192 Identities=13% Similarity=0.049 Sum_probs=128.1
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
....+++++++..+++...++.|..++..+++ .. ... ... ......+++++.+..++++..| +.
T Consensus 143 ~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~-----~~--~~~--~~~-~~~v~~l~~s~~~~~~~~~~~d------~~ 206 (337)
T d1gxra_ 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-----LV--RQF--QGH-TDGASCIDISNDGTKLWTGGLD------NT 206 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EE--EEE--CCC-SSCEEEEEECTTSSEEEEEETT------SE
T ss_pred cccccccccccccccccccccccccccccccc-----cc--ccc--ccc-cccccccccccccccccccccc------cc
Confidence 34678899999888777778899999864443 11 111 111 1245788888744455553222 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
+..||.++++....... ......++++++++..++....+.|..+|.+....... .. .....+.
T Consensus 207 v~i~d~~~~~~~~~~~~------~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~------~~~~i~~ 270 (337)
T d1gxra_ 207 VRSWDLREGRQLQQHDF------TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL----HL------HESCVLS 270 (337)
T ss_dssp EEEEETTTTEEEEEEEC------SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE----CC------CSSCEEE
T ss_pred ccccccccceeeccccc------ccceEEEEEcccccccceeccccccccccccccccccc----cc------cccccce
Confidence 99999998876644333 23456789999998877777788999999875443211 11 1123689
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
++++|+|.++++-..++.|..+|...++ .+...... .....+++.++|+++++....+.+++.+
T Consensus 271 v~~s~~g~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~~-----~~v~~~~~s~d~~~l~t~s~D~~I~vWd 334 (337)
T d1gxra_ 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGA-SIFQSKES-----SSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECS-----SCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCC-EEEEccCC-----CCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 9999999777777788999999998764 44444321 2356789999998777755446677654
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.86 E-value=2.1e-06 Score=76.73 Aligned_cols=206 Identities=11% Similarity=0.045 Sum_probs=122.8
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
.+++|+|+|++++++..++.|..||...++ ......+.... .....|+++| +++++++.. . + ..|.
T Consensus 11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~-----~~~~~~l~gH~---~~V~~l~fsp-~~~~l~s~s-~--D--~~i~ 76 (371)
T d1k8kc_ 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHN---GQVTGVDWAP-DSNRIVTCG-T--D--RNAY 76 (371)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEETTE-----EEEEEEEECCS---SCEEEEEEET-TTTEEEEEE-T--T--SCEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCC-----EEEEEEecCCC---CCEEEEEECC-CCCEEEEEE-C--C--CeEE
Confidence 689999999988888778899999854333 11111222111 2468999998 455444322 1 1 3488
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc--cCCcEEEEecCCccccccccccccccCe
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG--VEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d--~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
.||++++.......+... ......++++|+|+.+++.+..+.|..++ ......... .... ........
T Consensus 77 vWd~~~~~~~~~~~~~~~---~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~---~~~~----~~~~~v~~ 146 (371)
T d1k8kc_ 77 VWTLKGRTWKPTLVILRI---NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK---HIKK----PIRSTVLS 146 (371)
T ss_dssp EEEEETTEEEEEEECCCC---SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE---EECT----TCCSCEEE
T ss_pred EEeecccccccccccccc---cccccccccccccccceeecccCcceeeeeeccccccccc---cccc----cccccccc
Confidence 999887765533333211 34567899999998777777777555544 333322211 0000 01123578
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCce--e-------------EEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCe
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEE--E-------------VKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPS 274 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~--~-------------~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~ 274 (335)
++++|++.++++-+.++.|..++...... . .......+ . .....++++.++|+.+++....+.
T Consensus 147 v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~s~~g~~l~s~~~d~~ 224 (371)
T d1k8kc_ 147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-S-CGWVHGVCFSANGSRVAWVSHDST 224 (371)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-C-SSCEEEEEECSSSSEEEEEETTTE
T ss_pred ccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccC-c-cCcEEEEEeecccccccccccCCc
Confidence 99999997777777788888887754310 0 01111111 1 133568899999986666443467
Q ss_pred EEEEEcCCC
Q 039428 275 ARLVESSDG 283 (335)
Q Consensus 275 ~~v~~~~~~ 283 (335)
+++.+...+
T Consensus 225 i~iwd~~~~ 233 (371)
T d1k8kc_ 225 VCLADADKK 233 (371)
T ss_dssp EEEEEGGGT
T ss_pred ceEEeeecc
Confidence 888876554
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.84 E-value=6.7e-08 Score=84.46 Aligned_cols=158 Identities=12% Similarity=0.023 Sum_probs=97.3
Q ss_pred eEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccC
Q 039428 105 GIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVE 183 (335)
Q Consensus 105 Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~ 183 (335)
|+++++ +++.+++.... +.|.+||+++++++....++. ...|.+++++|||+ +||++...++|+++|.+
T Consensus 1 g~a~~~-~~~~l~~~~~~-----~~v~v~D~~t~~~~~t~~~~~----~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~ 70 (346)
T d1jmxb_ 1 GPALKA-GHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPD----KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 70 (346)
T ss_dssp CCCCCT-TCEEEEEEETT-----TEEEEEETTTTEEEEEEECSS----CCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CccCCC-CCcEEEEEcCC-----CEEEEEECCCCCEEEEEEcCC----CCCcceEEECCCCCEEEEEECCCCcEEEEeCc
Confidence 456775 66666653322 469999999998876555421 35789999999986 89999999999999987
Q ss_pred CcEEE-EecCCccccccccccccccCeEEEccCC-eEEEEECC-----------CCEEEEEeCCCCceeEEEEeccCCcC
Q 039428 184 GQLLS-IIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMC-----------SGNLFKIDIRKEEEEVKLIELRGGSS 250 (335)
Q Consensus 184 g~~~~-~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~-----------~~~v~~~d~~~~~~~~~~~~~~g~~~ 250 (335)
..... .+..... .......|.+++++||| ++|+++.. ...+..++...++ ....+.... .
T Consensus 71 t~~~~~~~~~~~~----~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~-~- 143 (346)
T d1jmxb_ 71 TCKNTFHANLSSV----PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL-EAKPVRTFP-M- 143 (346)
T ss_dssp TTEEEEEEESCCS----TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG-GBCCSEEEE-C-
T ss_pred cCeeeeeeccccc----ccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccce-eeeEEEeee-c-
Confidence 54432 2211100 11123458999999999 89988643 4556666665542 111111100 0
Q ss_pred CCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 251 LSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 251 ~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
-.....+...+++.+|+++. .+.+++...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 172 (346)
T d1jmxb_ 144 PRQVYLMRAADDGSLYVAGP---DIYKMDVKT 172 (346)
T ss_dssp CSSCCCEEECTTSCEEEESS---SEEEECTTT
T ss_pred cCceEEEEecCCCEEEEeCC---cceEEEccC
Confidence 01244566666777887754 244555443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.83 E-value=5.4e-07 Score=82.54 Aligned_cols=173 Identities=12% Similarity=0.081 Sum_probs=107.7
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEe----CCCCeEEEEEecCCC
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVD----RPRNRLLVAFTDVLG 124 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d----~~~g~l~v~~~D~~~ 124 (335)
..|++++++|||+.+|++..++.|.+||..+++. .. ..+.+. +..+.++.++ |++.++++++.+.
T Consensus 62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~----~~---~~~i~~--~~~~~~~~~s~~~spDG~~l~v~~~~~-- 130 (426)
T d1hzua2 62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEP----TK---VAEIKI--GIEARSVESSKFKGYEDRYTIAGAYWP-- 130 (426)
T ss_dssp SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSC----EE---EEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEES--
T ss_pred CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCce----eE---EEEEeC--CCCCcceEEeeeecCCCCEEEEeecCC--
Confidence 4699999999999998887789999999654441 11 111111 1245566665 4455678865332
Q ss_pred CccceEEEEECCCCeEEEEeecCCCc---c---CCCCCCceeECCCCc-EEEEeCCCCeEEEEccCC-cEEEEecCCccc
Q 039428 125 NKYSALAAYDLSTWKRLFLTQLSGKS---E---EKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEG-QLLSIIRSPLFT 196 (335)
Q Consensus 125 ~~~~~v~~~d~~~~~~~~~~~~~~~~---~---~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~ 196 (335)
..+..+|.++++........... . ....+..++..+++. ++++....+.|..++... ......
T Consensus 131 ---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~------ 201 (426)
T d1hzua2 131 ---PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT------ 201 (426)
T ss_dssp ---SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEE------
T ss_pred ---CeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeE------
Confidence 46889999988766433221100 0 012233456667764 666677777776665432 111100
Q ss_pred cccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEec
Q 039428 197 AKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIEL 245 (335)
Q Consensus 197 ~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~ 245 (335)
..+....+.+++++|+| ++|++....+.+..++....+ ....+..
T Consensus 202 ---~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~ 247 (426)
T d1hzua2 202 ---SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR-LSALVDV 247 (426)
T ss_dssp ---EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE-EEEEEEC
T ss_pred ---EeccCCccEeeeECCCCcEEEeeeecccceeeeeccccc-EEEEecc
Confidence 01123458999999999 899999999999999999874 4444443
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=6e-06 Score=72.48 Aligned_cols=197 Identities=14% Similarity=0.111 Sum_probs=129.0
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-.+++|+|+|+.+++...++.|..||...... + .. ..+.... .....+.+++ ++.++++.... ..|
T Consensus 100 I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~--~-~~--~~~~~~~---~~v~~~~~~~-~~~~l~s~~~d-----~~i 165 (337)
T d1gxra_ 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP--R-IK--AELTSSA---PACYALAISP-DSKVCFSCCSD-----GNI 165 (337)
T ss_dssp EEEEEECTTSSEEEEEESSSEEEEEECCCC----E-EE--EEEECSS---SCEEEEEECT-TSSEEEEEETT-----SCE
T ss_pred EEEEEEcCCCCEEEEeeccccccccccccccc--c-cc--ccccccc---cccccccccc-ccccccccccc-----ccc
Confidence 46899999999888878899999998532221 0 11 1111111 2456788887 55555532211 359
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccCe
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
..+|..+++....... . ....+.+++.++|+.+++....+.|..+|... +....+. . ......
T Consensus 166 ~~~~~~~~~~~~~~~~----~-~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~---~--------~~~i~~ 229 (337)
T d1gxra_ 166 AVWDLHNQTLVRQFQG----H-TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD---F--------TSQIFS 229 (337)
T ss_dssp EEEETTTTEEEEEECC----C-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---C--------SSCEEE
T ss_pred cccccccccccccccc----c-ccccccccccccccccccccccccccccccccceeecccc---c--------ccceEE
Confidence 9999998876643321 1 34456789999998777777788999999764 4433221 1 123678
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
++++|++.++++-..++.|..+|.+..+ ........ .....+++.++|+++++....+.+++.+...+
T Consensus 230 l~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~----~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~ 297 (337)
T d1gxra_ 230 LGYCPTGEWLAVGMESSNVEVLHVNKPD--KYQLHLHE----SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTSSC--EEEECCCS----SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEEcccccccceeccccccccccccccc--cccccccc----cccceEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 9999999666666678899999998873 22222111 23578999999987777554577888887655
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.80 E-value=1.4e-07 Score=87.06 Aligned_cols=148 Identities=16% Similarity=0.112 Sum_probs=94.6
Q ss_pred CCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeE-----------
Q 039428 110 RPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKI----------- 177 (335)
Q Consensus 110 ~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I----------- 177 (335)
+++..||| +|..+ ++|.++|+++++......++. ...|+++++.++|+ +||+......+
T Consensus 81 pDGr~lfV--~d~~~---~rVavIDl~t~k~~~ii~iP~----g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~ 151 (441)
T d1qnia2 81 YDGKYLFI--NDKAN---TRVARIRLDIMKTDKITHIPN----VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL 151 (441)
T ss_dssp EEEEEEEE--EETTT---TEEEEEETTTTEEEEEEECTT----CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred CCCCEEEE--EcCCC---CEEEEEECCCCcEeeEEecCC----CCCccceEEeccCCEEEEEeccCCcccccCccccccc
Confidence 43557888 45443 469999999998775555421 46789999999986 79986554443
Q ss_pred -------EEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCE----------------------
Q 039428 178 -------WKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGN---------------------- 227 (335)
Q Consensus 178 -------~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~---------------------- 227 (335)
..+|+....... ..+....|.+++++||| ++|++...++.
T Consensus 152 ~~~~~~~~~iD~~t~~v~~----------qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~ 221 (441)
T d1qnia2 152 DNSYTMFTAIDAETMDVAW----------QVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVER 221 (441)
T ss_dssp GGEEEEEEEEETTTCSEEE----------EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHH
T ss_pred ccccceEEeecCccceeeE----------EEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccc
Confidence 234444322110 01122358999999999 89999866432
Q ss_pred -----------------EEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcC
Q 039428 228 -----------------LFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESS 281 (335)
Q Consensus 228 -----------------v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~ 281 (335)
+..++.....+....++. + ..|.|++++|||+ +|+++..++.+.|++..
T Consensus 222 ~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPv-g----ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 222 IAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPV-P----KNPHGLNTSPDGKYFIANGKLSPTVSVIAID 288 (441)
T ss_dssp HHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECC-B----SSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred eEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeC-C----CCccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence 222332221113444443 2 3499999999997 67777777889999853
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.69 E-value=2.3e-06 Score=73.37 Aligned_cols=203 Identities=11% Similarity=0.051 Sum_probs=125.5
Q ss_pred cCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCC
Q 039428 45 HSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLG 124 (335)
Q Consensus 45 ~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~ 124 (335)
.+-...-.+++|+|+|+.++++..++.|..||..+++. .. . ...........+++.+ +++++++..|
T Consensus 9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~----~~---~--~~~~h~~~v~~v~~~~-~g~~~~~~~d--- 75 (299)
T d1nr0a2 9 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS----NR---V--FPDVHATMITGIKTTS-KGDLFTVSWD--- 75 (299)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----EE---C--SSCSCSSCEEEEEECT-TSCEEEEETT---
T ss_pred CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE----EE---E--EcCCCCCcEEEEEeec-cceeecccce---
Confidence 34344467899999999887778899999999654541 11 1 2211113467899997 7888876444
Q ss_pred CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 125 NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 125 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
..+..++............ .......+..+++.++|++.++... +.+..++.. +..... ..
T Consensus 76 ---~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~g~~~~~~~~-~~i~~~~~~-~~~~~~------------~~ 136 (299)
T d1nr0a2 76 ---DHLKVVPAGGSGVDSSKAV--ANKLSSQPLGLAVSADGDIAVAACY-KHIAIYSHG-KLTEVP------------IS 136 (299)
T ss_dssp ---TEEEEECSSSSSSCTTSCC--EEECSSCEEEEEECTTSSCEEEEES-SEEEEEETT-EEEEEE------------CS
T ss_pred ---eeEEEeccCCccccccccc--ccccccccccccccccccccccccc-ccccccccc-cccccc------------cc
Confidence 3588888654322100000 0001345678999999986666443 467777643 222211 11
Q ss_pred cccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 205 FGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
.....++++|++.++++-..++.|..+|+++. ....+.... . -.....+++++++.++++....+.+++.+...+
T Consensus 137 ~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~--~~~~~~~~~-~-~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~ 211 (299)
T d1nr0a2 137 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA--SVSEVKTIV-H-PAEITSVAFSNNGAFLVATDQSRKVIPYSVANN 211 (299)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEEEETT--EEEEEEEEE-C-SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT
T ss_pred cccccccccccccccccccccccccccccccc--ccccccccc-c-ccccccccccccccccccccccccccccccccc
Confidence 23667999999977767678899999998876 333222111 1 123578999999987777554567888876543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.67 E-value=4.7e-06 Score=73.74 Aligned_cols=186 Identities=11% Similarity=-0.019 Sum_probs=105.4
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.|.+++++++|+..|+. ..++++.+++...+.. .........+.........+..++ ++ .++...+. .
T Consensus 166 ~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~-----~ 234 (373)
T d2madh_ 166 SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA----GAGLVGAMLTAAQNLLTQPAQANK-SG-RIVWPVYS-----G 234 (373)
T ss_pred cceeEEEecCCCcEEEEEcCCCeEEEEEcCCcee----eEEEeeeccccCccceeeeEEECC-Cc-eEEEecCC-----c
Confidence 47789999999877776 7789999998543331 111001001110001233444443 33 33322221 3
Q ss_pred eEEEEECCCCeEEEEeecCCC-------ccCCCCCCceeECCCCc-EEEE---------eCCCCeEEEEccCC-cEEEEe
Q 039428 129 ALAAYDLSTWKRLFLTQLSGK-------SEEKSTADDIAVDAEGN-AYVT---------DVVSSKIWKVGVEG-QLLSII 190 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~-------~~~~~~p~~~~vd~~G~-lyV~---------d~~~~~I~~~d~~g-~~~~~~ 190 (335)
.+..++..++........... .........+++.++|. +|++ ....+.|+.+|... +....+
T Consensus 235 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~ 314 (373)
T d2madh_ 235 KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI 314 (373)
T ss_pred eEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe
Confidence 477777766554322111100 00123344567777753 5543 33445667777543 333221
Q ss_pred cCCccccccccccccccCeEEEccCC-e-EEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCC
Q 039428 191 RSPLFTAKEWYKNVFGLNGIVYHPDG-F-LIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSP 262 (335)
Q Consensus 191 ~~~~~~~~~~~~~~~~p~Gia~~~dg-~-Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~ 262 (335)
. ....+.+++|+||| + ||++...++.|+.+|...++ .++.+...| ..|..+++.++
T Consensus 315 ~-----------~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~-~~~~~~~~g----~~P~~l~~~~~ 372 (373)
T d2madh_ 315 S-----------LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD-QDQSTVELG----SGPQVLSVMNE 372 (373)
T ss_pred c-----------CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC-EEEEECCCC----CCCcEEEEecC
Confidence 1 12358899999999 3 68899999999999999876 667776444 34999998765
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.63 E-value=2.7e-05 Score=67.82 Aligned_cols=203 Identities=11% Similarity=0.086 Sum_probs=119.3
Q ss_pred ceeeeEEcCCCCEEEEEec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 50 LCETAKWDDVGRRFLVSFL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
...+++|+++++.+++... ...+..++...++. .. .+.... .....+++++++..++++..+.
T Consensus 104 ~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~----~~---~l~~h~---~~v~~v~~~~~~~~~l~sgs~d----- 168 (311)
T d1nr0a1 104 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS----NG---NLTGQA---RAMNSVDFKPSRPFRIISGSDD----- 168 (311)
T ss_dssp CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB----CB---CCCCCS---SCEEEEEECSSSSCEEEEEETT-----
T ss_pred ccccccccccccccccccccccccccccccccccc----cc---cccccc---cccccccccccceeeecccccc-----
Confidence 3578999999998777743 34466666443331 11 111111 2467899997444445532221
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
..|..||.++++....... . ....+.++++|+|+++++....+.|..++... .....+....... ......
T Consensus 169 ~~i~i~d~~~~~~~~~~~~--~---~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~---~~h~~~ 240 (311)
T d1nr0a1 169 NTVAIFEGPPFKFKSTFGE--H---TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN---VAHSGS 240 (311)
T ss_dssp SCEEEEETTTBEEEEEECC--C---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSS---CSSSSC
T ss_pred ccccccccccccccccccc--c---cccccccccCcccccccccccccccccccccccccccccccccccc---cccccc
Confidence 3599999998876643321 1 24457899999999888877788999998754 3333332211110 001123
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEc
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVES 280 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~ 280 (335)
...++++|+|..+++-..++.|..+|.+.++ ..+.+...... . ..-+.+..++. ++.++. ++.+++.+.
T Consensus 241 V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~-~~~~l~~~~~~--~-~~~~~~~~~~~~l~s~s~-dG~i~~wd~ 310 (311)
T d1nr0a1 241 VFGLTWSPDGTKIASASADKTIKIWNVATLK-VEKTIPVGTRI--E-DQQLGIIWTKQALVSISA-NGFINFVNP 310 (311)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEECCSSG--G-GCEEEEEECSSCEEEEET-TCCEEEEET
T ss_pred ccccccCCCCCEEEEEeCCCeEEEEECCCCc-EEEEEECCCCc--c-ceEEEEEecCCEEEEEEC-CCEEEEEeC
Confidence 6789999999666666678899999998874 45555532211 1 12234444443 444433 466776653
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.61 E-value=3.6e-05 Score=66.09 Aligned_cols=237 Identities=12% Similarity=0.094 Sum_probs=133.5
Q ss_pred EEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 43 QYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 43 ~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
++.+-.-.-.+++|+++++.++++..+++|..||..+++ .+. .+.... .....+++++++..++.+..|.
T Consensus 50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~----~~~---~~~~~~---~~v~~v~~~~~~~~l~~~~~d~ 119 (340)
T d1tbga_ 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN----KVH---AIPLRS---SWVMTCAYAPSGNYVACGGLDN 119 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE----EEE---EEECSC---SCEEEEEECTTSSEEEEEETTC
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce----eEE---EEeccc---ccEEeeEeeccceeeeeecccc
Confidence 344444446799999999988777889999999965444 121 222221 2467889987434444432221
Q ss_pred CCCccceEEEEECCCCe----EEE------------------------------EeecCCC------ccCCCCCCceeEC
Q 039428 123 LGNKYSALAAYDLSTWK----RLF------------------------------LTQLSGK------SEEKSTADDIAVD 162 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~----~~~------------------------------~~~~~~~------~~~~~~p~~~~vd 162 (335)
.+..++..... ... ....... .............
T Consensus 120 ------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (340)
T d1tbga_ 120 ------ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193 (340)
T ss_dssp ------CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred ------eeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccc
Confidence 23333322110 000 0000000 0001122334555
Q ss_pred CCCcEEEEeCCCCeEEEEccCCc-EEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEE
Q 039428 163 AEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVK 241 (335)
Q Consensus 163 ~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~ 241 (335)
+.+.++++....+.|..+|.... ....+.. .....+.++++|++.++++-..++.|..++....+ ...
T Consensus 194 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~----------h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~-~~~ 262 (340)
T d1tbga_ 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTG----------HESDINAICFFPNGNAFATGSDDATCRLFDLRADQ-ELM 262 (340)
T ss_dssp TTSSEEEEEETTTEEEEEETTTTEEEEEECC----------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEE
T ss_pred cccceeEEeecCceEEEEECCCCcEEEEEeC----------CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc-ccc
Confidence 66777777777888888887643 3332211 11236789999999777777788899999998763 333
Q ss_pred EEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe-CCeEEE
Q 039428 242 LIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK-DGRVYL 313 (335)
Q Consensus 242 ~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~-~g~lyV 313 (335)
.+.... . ......+++.++|+++++....+.+++.+...+ +....+.+.. ...+++++. ++++.+
T Consensus 263 ~~~~~~-~-~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~H~-~~V~~l~~s~d~~~l~ 328 (340)
T d1tbga_ 263 TYSHDN-I-ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHD-NRVSCLGVTDDGMAVA 328 (340)
T ss_dssp EECCTT-C-CSCEEEEEECSSSCEEEEEETTSCEEEEETTTC----CEEEEECCCS-SCEEEEEECTTSSCEE
T ss_pred cccccc-c-cCceEEEEECCCCCEEEEEECCCEEEEEECCCC----cEEEEEcCCC-CCEEEEEEeCCCCEEE
Confidence 343221 1 223467899999988777554577888887654 2333343221 123567774 454444
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.58 E-value=2.9e-05 Score=67.46 Aligned_cols=162 Identities=12% Similarity=0.059 Sum_probs=95.6
Q ss_pred hhhhhhhcCCCceeEEEcCCCcceeeeEEcCCCCEEEEE-ecC-CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcce
Q 039428 28 IELAIAMAKPATHVYQYHSPSFLCETAKWDDVGRRFLVS-FLD-GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMG 105 (335)
Q Consensus 28 ~~~~~~~~d~~~~~~~~~~~~~~pegia~d~~g~~~~~~-~~~-~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~G 105 (335)
.++.+++-+.....+..........+++|+|+|+.++++ ..+ ..|+.+|..++. .. ++.... .....
T Consensus 22 ~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-----~~--~~~~~~----~~v~~ 90 (360)
T d1k32a3 22 SRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-----AE--KFEENL----GNVFA 90 (360)
T ss_dssp ETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-----EE--ECCCCC----CSEEE
T ss_pred ECCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-----EE--EeeCCC----ceEEe
Confidence 445566656655443333344456899999999887766 444 368899864343 12 121111 25678
Q ss_pred EEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEE-Ee---------CCCC
Q 039428 106 IAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYV-TD---------VVSS 175 (335)
Q Consensus 106 i~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV-~d---------~~~~ 175 (335)
++++| +++.+++.... ..++.++.++++....... ......++++.|+|+..+ +. ...+
T Consensus 91 ~~~sp-dg~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~ 159 (360)
T d1k32a3 91 MGVDR-NGKFAVVANDR-----FEIMTVDLETGKPTVIERS-----REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159 (360)
T ss_dssp EEECT-TSSEEEEEETT-----SEEEEEETTTCCEEEEEEC-----SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred eeecc-cccccceeccc-----cccccccccccceeeeeec-----ccccccchhhccceeeeeeeccccccceeecccc
Confidence 99998 55544432222 3599999998876543322 134567899999997444 22 1234
Q ss_pred eEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEE
Q 039428 176 KIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVI 221 (335)
Q Consensus 176 ~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyva 221 (335)
.++.++..++....+.. ......+++++||| .|++.
T Consensus 160 ~~~v~d~~~~~~~~~~~----------~~~~~~~~~~spdg~~l~~~ 196 (360)
T d1k32a3 160 AIHVYDMEGRKIFAATT----------ENSHDYAPAFDADSKNLYYL 196 (360)
T ss_dssp EEEEEETTTTEEEECSC----------SSSBEEEEEECTTSCEEEEE
T ss_pred ceeeeccccCceeeecc----------cccccccccccCCCCEEEEE
Confidence 57777777655442211 11235677888888 55544
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.58 E-value=1.5e-06 Score=76.06 Aligned_cols=175 Identities=15% Similarity=0.071 Sum_probs=108.2
Q ss_pred EEcC-CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEE
Q 039428 55 KWDD-VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAY 133 (335)
Q Consensus 55 a~d~-~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~ 133 (335)
-|+| +|+++... ..+.|+.+|..++. + .+.+. ......++++|+++.|+++..+. + ..|+++
T Consensus 9 ~fSP~dG~~~a~~-~~g~v~v~d~~~~~-----~-----~~~~~--~~~v~~~~~spDg~~l~~~~~~~-g---~~v~v~ 71 (360)
T d1k32a3 9 DFSPLDGDLIAFV-SRGQAFIQDVSGTY-----V-----LKVPE--PLRIRYVRRGGDTKVAFIHGTRE-G---DFLGIY 71 (360)
T ss_dssp EEEECGGGCEEEE-ETTEEEEECTTSSB-----E-----EECSC--CSCEEEEEECSSSEEEEEEEETT-E---EEEEEE
T ss_pred cccCCCCCEEEEE-ECCeEEEEECCCCc-----E-----EEccC--CCCEEEEEECCCCCEEEEEEcCC-C---CEEEEE
Confidence 3787 78776555 46799999864333 1 11111 23678999998444555543332 1 358999
Q ss_pred ECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEE-EecCCccccccccccccccCeEEE
Q 039428 134 DLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLS-IIRSPLFTAKEWYKNVFGLNGIVY 212 (335)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~-~~~~~~~~~~~~~~~~~~p~Gia~ 212 (335)
|.++++...... .....+.++++|+|+..++....+.++.++.++.... .+.. .......+++
T Consensus 72 d~~~~~~~~~~~------~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 135 (360)
T d1k32a3 72 DYRTGKAEKFEE------NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS----------REAMITDFTI 135 (360)
T ss_dssp ETTTCCEEECCC------CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC----------SSSCCCCEEE
T ss_pred ECCCCcEEEeeC------CCceEEeeeecccccccceeccccccccccccccceeeeeec----------ccccccchhh
Confidence 999887663221 1355678999999998888788889999998765433 2211 1123678999
Q ss_pred ccCC-eEEEEEC---------CCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 213 HPDG-FLIVIHM---------CSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 213 ~~dg-~Lyvad~---------~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
+||| .|.++.. ..+.++.++..++ ....+.... ....++++.++|+.++.
T Consensus 136 spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~--~~~~~~~~~----~~~~~~~~spdg~~l~~ 195 (360)
T d1k32a3 136 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--KIFAATTEN----SHDYAPAFDADSKNLYY 195 (360)
T ss_dssp CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT--EEEECSCSS----SBEEEEEECTTSCEEEE
T ss_pred ccceeeeeeeccccccceeeccccceeeeccccC--ceeeecccc----cccccccccCCCCEEEE
Confidence 9999 5554432 2345777888776 333222111 22456788888864333
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.56 E-value=4.2e-05 Score=67.93 Aligned_cols=201 Identities=9% Similarity=0.019 Sum_probs=116.9
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
...+++|+|+++++++...++.|..||..++. ... ....... ......+.++|++..++++..|. . -.
T Consensus 53 ~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~-----~~~--~~~~~~~-~~~v~~i~~~p~~~~l~~~s~d~--~--i~ 120 (371)
T d1k8kc_ 53 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT-----WKP--TLVILRI-NRAARCVRWAPNEKKFAVGSGSR--V--IS 120 (371)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEETTE-----EEE--EEECCCC-SSCEEEEEECTTSSEEEEEETTS--S--EE
T ss_pred CEEEEEECCCCCEEEEEECCCeEEEEeecccc-----ccc--ccccccc-cccccccccccccccceeecccC--c--ce
Confidence 35899999999987777778999999854333 111 2222221 13568899998444455533221 1 23
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEE-ec-CCc---cccc----cc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSI-IR-SPL---FTAK----EW 200 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~-~~-~~~---~~~~----~~ 200 (335)
++.++.............. . ......++++|+|+.+++.+..+.|..++........ .. ..+ .... ..
T Consensus 121 i~~~~~~~~~~~~~~~~~~--~-~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (371)
T d1k8kc_ 121 ICYFEQENDWWVCKHIKKP--I-RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 197 (371)
T ss_dssp EEEEETTTTEEEEEEECTT--C-CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred eeeeecccccccccccccc--c-ccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeec
Confidence 4444444443332222211 1 2345678999999988888888888888865322100 00 000 0000 00
Q ss_pred cccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 201 YKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
.......++++++|+|..+++-..++.|..+|...++ ....+.... .....+++.++|.+++++.
T Consensus 198 ~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~----~~v~s~~fs~d~~~la~g~ 262 (371)
T d1k8kc_ 198 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM-AVATLASET----LPLLAVTFITESSLVAAGH 262 (371)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT-EEEEEECSS----CCEEEEEEEETTEEEEEET
T ss_pred cCccCcEEEEEeecccccccccccCCcceEEeeeccc-ceeeeeccc----ccceeeeecCCCCEEEEEc
Confidence 1112236889999999666666678999999998764 455554322 1136789999998877754
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.55 E-value=2.6e-07 Score=86.00 Aligned_cols=159 Identities=12% Similarity=0.106 Sum_probs=97.0
Q ss_pred CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCC---ccCCCCCCceeECCC----CcEEEEeCC
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGK---SEEKSTADDIAVDAE----GNAYVTDVV 173 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~p~~~~vd~~----G~lyV~d~~ 173 (335)
..|.+|++.+ +|+|||+ +... +.|++++.++++......+... ..+....-||++||+ +.+|++-+.
T Consensus 27 ~~P~~la~~p-dg~llVt--er~~---G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~ 100 (450)
T d1crua_ 27 NKPHALLWGP-DNQIWLT--ERAT---GKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTF 100 (450)
T ss_dssp SSEEEEEECT-TSCEEEE--ETTT---CEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCceEEEEeC-CCeEEEE--EecC---CEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEec
Confidence 3799999997 8999995 3211 3599999888876544443221 112355678999986 679996321
Q ss_pred ------------CCeEEEEccCC--cEEEEecCCccccccccccccccCeEEEccCCeEEEEECC---------------
Q 039428 174 ------------SSKIWKVGVEG--QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC--------------- 224 (335)
Q Consensus 174 ------------~~~I~~~d~~g--~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~--------------- 224 (335)
...|.++..+. ....... ..+... .......-..|++++||+||++-..
T Consensus 101 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~i~~~~-p~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~~~~~ 178 (450)
T d1crua_ 101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPV-DLLAGL-PSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQA 178 (450)
T ss_dssp ECTTC--CCSCEEEEEEEEEEETTTTEEEEEE-EEEEEE-CCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCT
T ss_pred CCCCCcccccccceEEEeeecccccccccceE-EEeecc-cccccccccceeEcCCCCEEEEecCCCccccccccccccc
Confidence 11234433322 1111000 000000 0011234578999999999998643
Q ss_pred -----------------CCEEEEEeCCCCce---------eEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC
Q 039428 225 -----------------SGNLFKIDIRKEEE---------EVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP 271 (335)
Q Consensus 225 -----------------~~~v~~~d~~~~~~---------~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~ 271 (335)
.++|.|+++++... ..+++.. | +..|.|++++++|+||+++.+
T Consensus 179 ~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~-G---~RNp~g~~~~p~g~l~~~e~G 247 (450)
T d1crua_ 179 QHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL-G---HRNPQGLAFTPNGKLLQSEQG 247 (450)
T ss_dssp TCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB-C---CSEEEEEEECTTSCEEEEEEC
T ss_pred ccCcccccccccccccccCceEEeeccccccccccccccccceEEEe-c---cccccceeecccceeeecccc
Confidence 38999999887410 1134443 3 567999999999999999764
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.55 E-value=4.4e-06 Score=74.53 Aligned_cols=196 Identities=12% Similarity=0.129 Sum_probs=118.3
Q ss_pred CcceEEEeCCCCeEEEEEecCCC-------CccceEEEEECCCCeE---EEEeecCCCccCCCCCCceeE--CCCC--cE
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLG-------NKYSALAAYDLSTWKR---LFLTQLSGKSEEKSTADDIAV--DAEG--NA 167 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~-------~~~~~v~~~d~~~~~~---~~~~~~~~~~~~~~~p~~~~v--d~~G--~l 167 (335)
.|..|++++ +|.+|+++.+... +..+.|+.+|+++... ........+......|.|+.+ +++| ++
T Consensus 36 G~EDi~~~~-dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L 114 (340)
T d1v04a_ 36 GSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 114 (340)
T ss_dssp CCCEEEECT-TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceEEECC-CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence 577899997 7888887643211 1125789999865422 111111111111357888765 5566 47
Q ss_pred EEEeC--CCCe--EEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECC-----------------CC
Q 039428 168 YVTDV--VSSK--IWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC-----------------SG 226 (335)
Q Consensus 168 yV~d~--~~~~--I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~-----------------~~ 226 (335)
||.+- ...+ |++++.++...+..+. +.. +....||.|++..+|.+|+++.. .+
T Consensus 115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~--v~~----~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g 188 (340)
T d1v04a_ 115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKT--IRH----KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS 188 (340)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEE--ECC----TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCE
T ss_pred EEEeccCCCceeEEEEEeCCCCeEEEEee--cCC----ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCce
Confidence 77753 3333 4566666655443321 111 23456999999999999999742 34
Q ss_pred EEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEE
Q 039428 227 NLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAAT 305 (335)
Q Consensus 227 ~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va 305 (335)
.++.++.+ ..+.+. .+ +..|.||++++++ .|||++....+++++....... .+....+..| ..|.++.
T Consensus 189 ~v~~~~~~----~~~~~~-~~---l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~-l~~~~~~~l~--~~pDNi~ 257 (340)
T d1v04a_ 189 FVTYYSPN----DVRVVA-EG---FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT-LTPLRVLSFD--TLVDNIS 257 (340)
T ss_dssp EEEEECSS----CEEEEE-EE---ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC-EEEEEEEECS--SEEEEEE
T ss_pred eEEEEcCC----ceEEEc-CC---CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcc-cceEEEecCC--CCCCccE
Confidence 56665543 333332 22 5679999999987 6999988667888877654422 2222233333 3478999
Q ss_pred Ee--CCeEEEEe
Q 039428 306 VK--DGRVYLSH 315 (335)
Q Consensus 306 ~~--~g~lyV~~ 315 (335)
++ +|.+|++.
T Consensus 258 ~d~~~g~lwva~ 269 (340)
T d1v04a_ 258 VDPVTGDLWVGC 269 (340)
T ss_dssp ECTTTCCEEEEE
T ss_pred EecCCCEEEEEE
Confidence 85 68899854
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.41 E-value=6.9e-06 Score=74.37 Aligned_cols=199 Identities=15% Similarity=0.129 Sum_probs=121.2
Q ss_pred CCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC-----C--------
Q 039428 59 VGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL-----G-------- 124 (335)
Q Consensus 59 ~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~-----~-------- 124 (335)
||+.+|+. ..+++|.++|...-+ +. +.+..|.. ..++|++.....+..||.+.... +
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fk-----t~--kIi~iPn~--~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMK-----CD--AILEIPNA--KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTE-----EE--EEEECSSC--CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred ceeEEEEEcCCCceEEEEECccee-----ee--EEEecCCC--CCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 68888888 678999999964332 22 24445653 36899998765677888652211 0
Q ss_pred -CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCC--------------CeEEEEcc------
Q 039428 125 -NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVS--------------SKIWKVGV------ 182 (335)
Q Consensus 125 -~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~--------------~~I~~~d~------ 182 (335)
.-.+.+..+|.++.++.+.+.. ...|.++.++++|+ +|++...+ ..+..++.
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V------~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~a 242 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA 242 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred hhcceEEEEEecCCceEEEEeee------CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHh
Confidence 0014467899999988877665 24678999999997 66654321 12222322
Q ss_pred --CCcEEE-----EecCC-----ccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCC-------ceeEEE
Q 039428 183 --EGQLLS-----IIRSP-----LFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKE-------EEEVKL 242 (335)
Q Consensus 183 --~g~~~~-----~~~~~-----~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~-------~~~~~~ 242 (335)
+|+... ++... .+. ...+...+|+|+.++||| ++|++...+..+.++|.+.- ......
T Consensus 243 v~~Gk~~eingV~VVD~~~~~~~~v~--~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~ 320 (459)
T d1fwxa2 243 IAAGDYQELNGVKVVDGRKEASSLFT--RYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 320 (459)
T ss_dssp HHHTCSEEETTEEEEECSGG--CSSE--EEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred hhcCCcEEeCCceeecccccCCccee--EEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence 111111 11100 000 023456789999999999 99999999999999999641 000011
Q ss_pred EeccCCcCCCCCCeEEEcCCCcEEEEecCCCeE
Q 039428 243 IELRGGSSLSLGDGLALLSPTKLVVAGNPYPSA 275 (335)
Q Consensus 243 ~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~ 275 (335)
+....+-. -+|---++|.+|+.|.+..-...+
T Consensus 321 ~~~e~elg-lgPLht~fd~~g~aytslfids~v 352 (459)
T d1fwxa2 321 VVAEPELG-LGPLHTAFDGRGNAYTSLFLDSQV 352 (459)
T ss_dssp EEECCBCC-SCEEEEEECTTSEEEEEETTTTEE
T ss_pred EEeecccC-cCccccccCCCceEEEEeeccceE
Confidence 11111111 248889999999999996633334
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.38 E-value=2.8e-06 Score=75.81 Aligned_cols=130 Identities=7% Similarity=-0.087 Sum_probs=84.1
Q ss_pred eEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCC---------C
Q 039428 105 GIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVV---------S 174 (335)
Q Consensus 105 Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~---------~ 174 (335)
.++..++..+.|++....... ...|+.+|.++++++..... .+...+++.|||+ +|++... .
T Consensus 24 ~~a~~~~~~~~~v~~~~~~~g-~~~~~~~d~~~~~~~~~~~~-------~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 24 DHGPGAISRRSHITLPAYFAG-TTENWVSCAGCGVTLGHSLG-------AFLSLAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCCCTTEEEEEECTTTCS-SEEEEEEETTTTEEEEEEEE-------CTTCEEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred ccccCCCCcceeEEeeccCCC-cceEEEEeCCCCcEEEEEeC-------CCCCcceECCCCCEEEEEcccCccccccccC
Confidence 333444456777754322211 15699999999988755443 1233699999985 8887632 3
Q ss_pred CeEEEEccCCc-EEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEecc
Q 039428 175 SKIWKVGVEGQ-LLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELR 246 (335)
Q Consensus 175 ~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~ 246 (335)
+.|.++|+.+. ....+..+.- ........|.+++++||| +||+++...+.+..+|+...+ ....+...
T Consensus 96 ~~v~v~D~~t~~~~~~i~~p~~---~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~-~~~~~~~~ 165 (368)
T d1mdah_ 96 DYVEVFDPVTFLPIADIELPDA---PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS-DDQLTKSA 165 (368)
T ss_dssp EEEEEECTTTCCEEEEEEETTS---CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE-EEEEEECS
T ss_pred CeEEEEECCCCcEeeeecCCcc---ceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc-EeEEeecc
Confidence 56999998754 3332211100 001123458999999999 899999999999999999874 45555543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.33 E-value=0.00013 Score=64.18 Aligned_cols=205 Identities=10% Similarity=0.098 Sum_probs=121.1
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-.+++|+++|+.++++..++.|..++...++. .. .. .+.. .....+.+.+....++.+ .+. ..+
T Consensus 124 V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~----~~---~~--~~h~-~~v~~~~~~~~~~~~~~~-~~~-----~~i 187 (388)
T d1erja_ 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKI----VM---IL--QGHE-QDIYSLDYFPSGDKLVSG-SGD-----RTV 187 (388)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEE----EE---EE--CCCS-SCEEEEEECTTSSEEEEE-ETT-----SEE
T ss_pred EEEEEECCCCCcceeccccccccccccccccc----cc---cc--cccc-cccccccccccccccccc-ccc-----eee
Confidence 46799999999888888899999998644431 11 11 1111 245678888644444443 222 359
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccC
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
..+|.++......... ......+.+.+ +|+++++.+..+.|..++... .....+....... ........
T Consensus 188 ~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~---~~h~~~v~ 258 (388)
T d1erja_ 188 RIWDLRTGQCSLTLSI------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG---TGHKDSVY 258 (388)
T ss_dssp EEEETTTTEEEEEEEC------SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---------CCCSSCEE
T ss_pred eeeecccccccccccc------ccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccc---cCCCCCEE
Confidence 9999988766543322 12233344444 678888777788899998763 3333222111000 01112367
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCceeEEE----------EeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEE
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKL----------IELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLV 278 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~----------~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~ 278 (335)
.++++|++.++++-..++.|..+|+...+ .... ..... . -.....+++.++|.++++....+.+++.
T Consensus 259 ~l~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~s~~~~~l~sg~~dg~i~vw 335 (388)
T d1erja_ 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNAN-NKSDSKTPNSGTCEVTYIG-H-KDFVLSVATTQNDEYILSGSKDRGVLFW 335 (388)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC----------------CEEEEEEC-C-SSCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred EEEECCCCCEEEEEECCCcEEEEeccCCc-cccccccccccceeeeccc-c-cceEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 89999999777777778899999887642 1110 00001 1 1234678899998877775545778888
Q ss_pred EcCCC
Q 039428 279 ESSDG 283 (335)
Q Consensus 279 ~~~~~ 283 (335)
+...+
T Consensus 336 d~~~~ 340 (388)
T d1erja_ 336 DKKSG 340 (388)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 87655
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.32 E-value=1e-05 Score=70.83 Aligned_cols=150 Identities=11% Similarity=-0.013 Sum_probs=89.5
Q ss_pred eCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCC---------CCeEE
Q 039428 109 DRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVV---------SSKIW 178 (335)
Q Consensus 109 d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~---------~~~I~ 178 (335)
.|+..++||.+..... ..+.|+++|.++++++...+. ...| .++++|||+ +||++.. .+.|.
T Consensus 10 spdg~~~~v~~~~~~~-~~~~v~v~D~~tg~~~~~~~~------g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~ 81 (355)
T d2bbkh_ 10 APDARRVYVNDPAHFA-AVTQQFVIDGEAGRVIGMIDG------GFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVE 81 (355)
T ss_dssp CCCTTEEEEEECGGGC-SSEEEEEEETTTTEEEEEEEE------CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCEEEEEecccCC-CcCeEEEEECCCCcEEEEEEC------CCCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence 3556789986432211 125799999999988755443 1223 699999996 9987642 46899
Q ss_pred EEccCCcE-EEEecCCccccccccccccccCeEEEccCC-eEEEEECC-CCEEEEEeCCCCceeEEEEeccCCc---CCC
Q 039428 179 KVGVEGQL-LSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMC-SGNLFKIDIRKEEEEVKLIELRGGS---SLS 252 (335)
Q Consensus 179 ~~d~~g~~-~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~-~~~v~~~d~~~~~~~~~~~~~~g~~---~~~ 252 (335)
++|..+.. ...+..+... .......|+++++++|| ++|+++.. ...+..++....+ ....+...+.. ...
T Consensus 82 v~D~~t~~~~~~~~~~~~~---~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 157 (355)
T d2bbkh_ 82 VFDPVTLLPTADIELPDAP---RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-FKRMLDVPDCYHIFPTA 157 (355)
T ss_dssp EECTTTCCEEEEEEETTCC---CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCSEEEEEEEE
T ss_pred EEECCCCCEEEEEecCCcc---eeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCc-EeeEEecCCcceEeecC
Confidence 99987543 3322111000 01123468999999999 88988855 4577778887764 44444432210 011
Q ss_pred CCCeEEEcCCCc-EEEEec
Q 039428 253 LGDGLALLSPTK-LVVAGN 270 (335)
Q Consensus 253 ~pdGia~d~~g~-l~va~~ 270 (335)
.+..+++.++|. +++...
T Consensus 158 ~~~~~~~~~dg~~~~v~~~ 176 (355)
T d2bbkh_ 158 PDTFFMHCRDGSLAKVAFG 176 (355)
T ss_dssp TTEEEEEETTSCEEEEECC
T ss_pred CcceEEEcCCCCEEEEEec
Confidence 234466666664 455433
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.31 E-value=5.6e-05 Score=64.28 Aligned_cols=196 Identities=11% Similarity=0.056 Sum_probs=113.8
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.+.++++.++|+++++. ..+.+..++. ++. .. .. .. .....+++++ +++++++.. .. +.
T Consensus 101 ~~~~~~~s~~g~~~~~~-~~~~i~~~~~--~~~----~~---~~-~~----~~~~~~~~s~-~~~~l~~g~-~d----g~ 159 (299)
T d1nr0a2 101 QPLGLAVSADGDIAVAA-CYKHIAIYSH--GKL----TE---VP-IS----YNSSCVALSN-DKQFVAVGG-QD----SK 159 (299)
T ss_dssp CEEEEEECTTSSCEEEE-ESSEEEEEET--TEE----EE---EE-CS----SCEEEEEECT-TSCEEEEEE-TT----SE
T ss_pred ccccccccccccccccc-cccccccccc--ccc----cc---cc-cc----cccccccccc-ccccccccc-cc----cc
Confidence 46789999999876665 4568888873 320 11 21 11 1346788887 455444322 21 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCccccccccccccccC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
|..||.++++........ . ....+.++++++|+.+++....+.|+.++.... ...... .+.. .....+
T Consensus 160 i~~~d~~~~~~~~~~~~~---~-~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~--~~~~-----h~~~v~ 228 (299)
T d1nr0a2 160 VHVYKLSGASVSEVKTIV---H-PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN--SWTF-----HTAKVA 228 (299)
T ss_dssp EEEEEEETTEEEEEEEEE---C-SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC--CCCC-----CSSCEE
T ss_pred cccccccccccccccccc---c-cccccccccccccccccccccccccccccccccccccccc--cccc-----cccccc
Confidence 999998877654322221 1 245678999999988887778889999987543 222110 1110 112367
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
.++++|+|.++++-..++.|..+|+...+ ....+...... ......++. +++..+++....+.+++.+.
T Consensus 229 ~l~~s~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~~~~~-~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 229 CVSWSPDNVRLATGSLDNSVIVWNMNKPS-DHPIIIKGAHA-MSSVNSVIW-LNETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTCTT-SCCEEETTSST-TSCEEEEEE-EETTEEEEEETTSCEEEEEC
T ss_pred cccccccccceEEEcCCCEEEEEECCCCC-cceEEEecCCC-CCcEEEEEE-CCCCEEEEEeCCCEEEEEec
Confidence 89999999777776678889999988753 22222222211 111223333 44555555443456776553
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.28 E-value=0.00064 Score=57.79 Aligned_cols=132 Identities=13% Similarity=0.078 Sum_probs=89.5
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEE-EecCCccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLS-IIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~-~~~~~~~~~~~~~~~~~~ 206 (335)
..|..||.++++....... . ....+.++++|+|+++++.+..+.|..++....... .+.... ....
T Consensus 206 ~~v~i~d~~~~~~~~~~~~--h---~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~--------~~~~ 272 (340)
T d1tbga_ 206 ASAKLWDVREGMCRQTFTG--H---ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN--------IICG 272 (340)
T ss_dssp TEEEEEETTTTEEEEEECC--C---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT--------CCSC
T ss_pred ceEEEEECCCCcEEEEEeC--C---CCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccccc--------ccCc
Confidence 4588899988876643322 1 345678999999998888888899999998754332 221110 1223
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEE
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARL 277 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v 277 (335)
...++++++|.++++-..++.|..+|....+ ....+. + + ......+++.+++.++++....+.+++
T Consensus 273 i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~--~-H-~~~V~~l~~s~d~~~l~s~s~Dg~v~i 338 (340)
T d1tbga_ 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLA--G-H-DNRVSCLGVTDDGMAVATGSWDSFLKI 338 (340)
T ss_dssp EEEEEECSSSCEEEEEETTSCEEEEETTTCC-EEEEEC--C-C-SSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred eEEEEECCCCCEEEEEECCCEEEEEECCCCc-EEEEEc--C-C-CCCEEEEEEeCCCCEEEEEccCCEEEE
Confidence 6789999999777777788999999998764 444454 2 1 123578999999987776543455654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.28 E-value=0.00034 Score=60.68 Aligned_cols=199 Identities=15% Similarity=0.094 Sum_probs=114.5
Q ss_pred eeeEEcCCCCEEEEEe--cCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 52 ETAKWDDVGRRFLVSF--LDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 52 egia~d~~g~~~~~~~--~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
..++|+++|+.+++.. .++.+..++...++. +. .+.... .....+++++.+..+.++..+. ..
T Consensus 119 ~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~---~~~~h~---~~v~~~~~~~~~~~~~~~~~~d-----~~ 183 (325)
T d1pgua1 119 SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS----LG---EVSGHS---QRINACHLKQSRPMRSMTVGDD-----GS 183 (325)
T ss_dssp EEEEECTTSSEEEEEECCSSCSEEEEETTTCCE----EE---ECCSCS---SCEEEEEECSSSSCEEEEEETT-----TE
T ss_pred EEEEECCCCCccceeeccccceEEEEeeccccc----ce---eeeecc---cccccccccccccceEEEeecc-----cc
Confidence 5789999999877663 345677776433431 11 111111 3457899987555545432221 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccC-CcEEEEecCCcccccccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
+..||....+......... ........+++.|+ ++++++....+.|..+|.. ++....+.... ...
T Consensus 184 v~~~d~~~~~~~~~~~~~~--~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~----------~~v 251 (325)
T d1pgua1 184 VVFYQGPPFKFSASDRTHH--KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ----------EPV 251 (325)
T ss_dssp EEEEETTTBEEEEEECSSS--CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTT----------BCC
T ss_pred cccccccccccceeccccc--CCCCccEEeeeccccceeccccccccceeeeeeccccccccccccc----------ccc
Confidence 8889988776653332211 11345678999997 6788888888999999975 44444332110 113
Q ss_pred CeEEEc---cCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 208 NGIVYH---PDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 208 ~Gia~~---~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
.++.++ +||.++++-..++.|..+|+..++ .++.+...+........++...+++. +++...++.+++.+
T Consensus 252 ~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~dg~i~vwd 324 (325)
T d1pgua1 252 QGGIFALSWLDSQKFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYE 324 (325)
T ss_dssp CSCEEEEEESSSSEEEEEETTSEEEEEETTTTE-EEEEEECCTTCGGGCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred ccceeeeeccCCCEEEEEeCCCeEEEEECCCCC-EEEEEEecCCcccCeEEEEEECCCCE-EEEEECCCEEEEEE
Confidence 344444 688667777788999999998774 55555543311001112344344444 44533336677654
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.19 E-value=0.0012 Score=55.09 Aligned_cols=166 Identities=11% Similarity=0.081 Sum_probs=107.1
Q ss_pred eeEEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEE
Q 039428 40 HVYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAF 119 (335)
Q Consensus 40 ~~~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~ 119 (335)
....+.+-...-.+++|+|++++++++..+++|..||..+++. +. .+.... .....+++++ ++.+.+..
T Consensus 9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~----~~---~~~~h~---~~V~~~~~~~-~~~~~~~~ 77 (317)
T d1vyhc1 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF----ER---TLKGHT---DSVQDISFDH-SGKLLASC 77 (317)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC----CE---EECCCS---SCEEEEEECT-TSSEEEEE
T ss_pred ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCE----EE---EEeCCC---CcEEEEeeec-cccccccc
Confidence 3445655444468999999999887778899999999755541 12 222221 2567899987 56555543
Q ss_pred ecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccc
Q 039428 120 TDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAK 198 (335)
Q Consensus 120 ~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~ 198 (335)
... ..+..++....+...... . . ......+.+.++++..++-...+.+..++... +....+..
T Consensus 78 ~~~-----~~~~~~~~~~~~~~~~~~--~--~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~------ 141 (317)
T d1vyhc1 78 SAD-----MTIKLWDFQGFECIRTMH--G--H-DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG------ 141 (317)
T ss_dssp ETT-----SCCCEEETTSSCEEECCC--C--C-SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC------
T ss_pred ccc-----cccccccccccccccccc--c--c-cccceeeeccCCCceEEeeccCcceeEeecccceeeeEEcc------
Confidence 322 235667766554432211 1 1 34456788889998888878888888888763 33332211
Q ss_pred cccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCC
Q 039428 199 EWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
.......+++++++.++++-..++.|..++....
T Consensus 142 ----~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~ 175 (317)
T d1vyhc1 142 ----HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 175 (317)
T ss_dssp ----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred ----CCCcceeeecccCCCEEEEEeCCCeEEEEeeccc
Confidence 1123678899999977777778888888888775
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.19 E-value=0.0006 Score=59.66 Aligned_cols=210 Identities=10% Similarity=0.019 Sum_probs=120.7
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
....+++.+++..++++..++.|..+|..... .. ...... .....+.+.+.+++++++.. .. +.
T Consensus 165 ~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-----~~--~~~~~~----~~~~~~~~~~~~~~~l~~~~-~d----~~ 228 (388)
T d1erja_ 165 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-----CS--LTLSIE----DGVTTVAVSPGDGKYIAAGS-LD----RA 228 (388)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EE--EEEECS----SCEEEEEECSTTCCEEEEEE-TT----SC
T ss_pred cccccccccccccccccccceeeeeeeccccc-----cc--cccccc----cccccccccCCCCCeEEEEc-CC----Ce
Confidence 35688999999888888888999999854322 11 111111 13345566655666666432 21 35
Q ss_pred EEEEECCCCeEEEEeecCCCc-c-CCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEE-ecCCccccc--cccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKS-E-EKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSI-IRSPLFTAK--EWYKNV 204 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~-~-~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~-~~~~~~~~~--~~~~~~ 204 (335)
|..+|..++............ . .....+.++++++|+..++.+..+.|..+|........ ......... ......
T Consensus 229 i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (388)
T d1erja_ 229 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 308 (388)
T ss_dssp EEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCS
T ss_pred EEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeeccccc
Confidence 999999887665332221100 0 02345679999999988887888899998875332210 000000000 000112
Q ss_pred cccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeE------EEcCCCcEEEEecCCCeEEEE
Q 039428 205 FGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGL------ALLSPTKLVVAGNPYPSARLV 278 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGi------a~d~~g~l~va~~~~~~~~v~ 278 (335)
.....++++|+|.++++-..++.|..+|...++ .+..+.... .....+ .+.+++.++++....+.+++.
T Consensus 309 ~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~-~~~~l~~H~----~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW 383 (388)
T d1erja_ 309 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLMLQGHR----NSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383 (388)
T ss_dssp SCEEEEEECGGGCEEEEEETTSEEEEEETTTCC-EEEEEECCS----SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-EEEEEeCCC----CCEEEEEEecCcccCCCCCEEEEEeCCCEEEEE
Confidence 236789999999766677788999999998774 445554211 112333 345678888876545667665
Q ss_pred Ec
Q 039428 279 ES 280 (335)
Q Consensus 279 ~~ 280 (335)
+.
T Consensus 384 ~~ 385 (388)
T d1erja_ 384 KY 385 (388)
T ss_dssp EE
T ss_pred ee
Confidence 53
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.11 E-value=0.00073 Score=56.36 Aligned_cols=197 Identities=12% Similarity=0.108 Sum_probs=115.3
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
....+.+.++++.+++...++.+..+|...+.. .. .+.... .....+++++ ++.++++.. .. ..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~~---~~~~~~---~~~~~~~~~~-~~~~l~~~~-~d----~~ 166 (317)
T d1vyhc1 103 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC----VK---TFTGHR---EWVRMVRPNQ-DGTLIASCS-ND----QT 166 (317)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCE----EE---EEECCS---SCEEEEEECT-TSSEEEEEE-TT----SC
T ss_pred cceeeeccCCCceEEeeccCcceeEeeccccee----ee---EEccCC---Ccceeeeccc-CCCEEEEEe-CC----Ce
Confidence 456788999999887778889999998654441 11 222221 2456788887 555555422 21 34
Q ss_pred EEEEECCCCeEEEEeec----------CCCcc-----CCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE-EEEecCC
Q 039428 130 LAAYDLSTWKRLFLTQL----------SGKSE-----EKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL-LSIIRSP 193 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~----------~~~~~-----~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~-~~~~~~~ 193 (335)
|..++..+++....... ..... .............+.++++.+..+.|..++..... ...+..
T Consensus 167 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~- 245 (317)
T d1vyhc1 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG- 245 (317)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC-
T ss_pred EEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeC-
Confidence 88888877665432211 00000 01111122223345666666777888888876433 332211
Q ss_pred ccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCC
Q 039428 194 LFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYP 273 (335)
Q Consensus 194 ~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~ 273 (335)
.......++++|++.++++-..++.|..+|....+ .+..+.... .....+++.+++.++++....+
T Consensus 246 ---------~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~----~~V~~~~~s~~~~~l~s~s~Dg 311 (317)
T d1vyhc1 246 ---------HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTLNAHE----HFVTSLDFHKTAPYVVTGSVDQ 311 (317)
T ss_dssp ---------CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC-CCEEEECCS----SCEEEEEECSSSSCEEEEETTS
T ss_pred ---------CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc-EEEEEcCCC----CCEEEEEEcCCCCEEEEEeCCC
Confidence 11236789999999766676788999999998764 455554322 2357899999988777655445
Q ss_pred eEEE
Q 039428 274 SARL 277 (335)
Q Consensus 274 ~~~v 277 (335)
.+++
T Consensus 312 ~i~i 315 (317)
T d1vyhc1 312 TVKV 315 (317)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.09 E-value=0.0024 Score=54.95 Aligned_cols=210 Identities=11% Similarity=0.009 Sum_probs=121.1
Q ss_pred ceeeeEEcCC--CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 50 LCETAKWDDV--GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 50 ~pegia~d~~--g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
....++|+|+ |+.++....+++|..||...+..... ... .... ... .......+++++ ++..+++.+... +
T Consensus 65 ~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~-~~~-~~~~~~~~-~~~~v~~v~~s~-~~~~l~~~~~~~-~- 138 (325)
T d1pgua1 65 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS-VEV-NVKSEFQV-LAGPISDISWDF-EGRRLCVVGEGR-D- 138 (325)
T ss_dssp CEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE-EEE-EEEEEEEC-CSSCEEEEEECT-TSSEEEEEECCS-S-
T ss_pred CEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceee-eec-cccccccc-ccCcEEEEEECC-CCCccceeeccc-c-
Confidence 3578999874 44444447789998887533321100 110 0000 011 112456888987 555444323221 1
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~ 204 (335)
..+..++.++++...... .. ....+.+++.+++. +.++....+.|..++... +....+. .+. ...
T Consensus 139 -~~~~~~~~~~~~~~~~~~--~h---~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~--~~~-----~~~ 205 (325)
T d1pgua1 139 -NFGVFISWDSGNSLGEVS--GH---SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR--THH-----KQG 205 (325)
T ss_dssp -CSEEEEETTTCCEEEECC--SC---SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC--SSS-----CTT
T ss_pred -ceEEEEeecccccceeee--ec---ccccccccccccccceEEEeecccccccccccccccceecc--ccc-----CCC
Confidence 347788888876653322 11 24457789999875 567777788898888653 3322111 111 112
Q ss_pred cccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc---CCCcEEEEecCCCeEEEEEc
Q 039428 205 FGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL---SPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d---~~g~l~va~~~~~~~~v~~~ 280 (335)
.....++++||+ .++++-..++.|..+|....+ ....+.... ....++.+. ++|.++++....+.+++.+.
T Consensus 206 ~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~-~~~~l~~~~----~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~ 280 (325)
T d1pgua1 206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE-FLKYIEDDQ----EPVQGGIFALSWLDSQKFATVGADATIRVWDV 280 (325)
T ss_dssp CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC-EEEECCBTT----BCCCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred CccEEeeeccccceeccccccccceeeeeecccc-ccccccccc----cccccceeeeeccCCCEEEEEeCCCeEEEEEC
Confidence 236789999975 888888888999999988764 444443211 113444444 67777777554577888887
Q ss_pred CCC
Q 039428 281 SDG 283 (335)
Q Consensus 281 ~~~ 283 (335)
..+
T Consensus 281 ~~~ 283 (325)
T d1pgua1 281 TTS 283 (325)
T ss_dssp TTT
T ss_pred CCC
Confidence 654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.82 E-value=0.0065 Score=51.20 Aligned_cols=217 Identities=10% Similarity=-0.014 Sum_probs=117.8
Q ss_pred eeEEEcCCCcce-eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEE
Q 039428 40 HVYQYHSPSFLC-ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVA 118 (335)
Q Consensus 40 ~~~~~~~~~~~p-egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~ 118 (335)
++.++.+-.... .++++ ++++++++..+++|..||..+++ .+. .+.... .....|++.+ ++.|+.+
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~----~~~---~l~~H~---~~V~~l~~s~-~~~l~s~ 70 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK----FLL---QLSGHD---GGVWALKYAH-GGILVSG 70 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTE----EEE---EEECCS---SCEEEEEEET-TTEEEEE
T ss_pred CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCc----EEE---EEECCC---CCEEEEEEcC-CCEEEEE
Confidence 455565432211 34444 56777777889999999965444 122 222221 3567899986 5665554
Q ss_pred EecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEE-ecCC-c--
Q 039428 119 FTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSI-IRSP-L-- 194 (335)
Q Consensus 119 ~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~-~~~~-~-- 194 (335)
..| ..|..++....+.......... ..........++++..++.+..+.|..++........ .... .
T Consensus 71 s~D------~~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 141 (355)
T d1nexb2 71 STD------RTVRVWDIKKGCCTHVFEGHNS---TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 141 (355)
T ss_dssp ETT------CCEEEEETTTTEEEEEECCCSS---CEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC
T ss_pred ecc------cccccccccccccccccccccc---cccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec
Confidence 333 3599999988766543322111 1122234455777777777778888888866432211 1000 0
Q ss_pred --cccccc-----ccccccc-CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEE
Q 039428 195 --FTAKEW-----YKNVFGL-NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLV 266 (335)
Q Consensus 195 --~~~~~~-----~~~~~~p-~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~ 266 (335)
...+.. ....... .-.+..+++.+.+.....+.|..+|....+ ...... + . ......+.+++++..+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~--~-~-~~~~~~~~~~~~~~~~ 216 (355)
T d1nexb2 142 LVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-CLYILS--G-H-TDRIYSTIYDHERKRC 216 (355)
T ss_dssp EEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-EEEEEC--C-C-SSCEEEEEEETTTTEE
T ss_pred cceeccccccceeeeeeeccccccccccccceeeeecccceeeeeeccccc-ceeeee--c-c-ccccccccccccceee
Confidence 000000 0000011 123445567677777778889999988763 333332 2 1 1235677888888766
Q ss_pred EEecCCCeEEEEEcCCC
Q 039428 267 VAGNPYPSARLVESSDG 283 (335)
Q Consensus 267 va~~~~~~~~v~~~~~~ 283 (335)
++....+.+++.+...+
T Consensus 217 ~~~~~d~~i~i~d~~~~ 233 (355)
T d1nexb2 217 ISASMDTTIRIWDLENG 233 (355)
T ss_dssp EEEETTSCEEEEETTTC
T ss_pred ecccccceEEeeecccc
Confidence 66554467888876654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.71 E-value=0.0034 Score=55.41 Aligned_cols=156 Identities=13% Similarity=0.163 Sum_probs=90.8
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCcc-CCCCCCceeECCCCcEEEEeCCCC---eE
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSE-EKSTADDIAVDAEGNAYVTDVVSS---KI 177 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~p~~~~vd~~G~lyV~d~~~~---~I 177 (335)
....+++++ ++.|..+..| ..|..||.++++..........-. .....+.+++.|+|++.++.+..+ .|
T Consensus 186 ~~~~v~~s~-dg~lasgs~D------g~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i 258 (393)
T d1sq9a_ 186 FATSVDISE-RGLIATGFNN------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 258 (393)
T ss_dssp CCCEEEECT-TSEEEEECTT------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEE
T ss_pred cEEEEEECC-CCEEEEEeCC------CcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCccee
Confidence 356788886 5644432222 369999999887764433211101 124467899999999888765433 46
Q ss_pred EEEccC-CcEEEEecCCcccccc---ccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCC
Q 039428 178 WKVGVE-GQLLSIIRSPLFTAKE---WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSL 253 (335)
Q Consensus 178 ~~~d~~-g~~~~~~~~~~~~~~~---~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~ 253 (335)
..+|.+ ++....+......... ..+.....+.++|+|||+++++-..+++|...|...++ .+..+....+.--..
T Consensus 259 ~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~-~~~~l~gH~~~v~~~ 337 (393)
T d1sq9a_ 259 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-RITTLNMHCDDIEIE 337 (393)
T ss_dssp EEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-EEEEEECCGGGCSSG
T ss_pred eecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC-EEEEECCcCCcccCC
Confidence 677775 4444433211000000 01112236889999999888888899999999998874 555554221110012
Q ss_pred CCeEEEcCCCcE
Q 039428 254 GDGLALLSPTKL 265 (335)
Q Consensus 254 pdGia~d~~g~l 265 (335)
...++++++|..
T Consensus 338 ~~~~~~~~~~~~ 349 (393)
T d1sq9a_ 338 EDILAVDEHGDS 349 (393)
T ss_dssp GGCCCBCTTSCB
T ss_pred ccEEEECCCCCE
Confidence 345677777653
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.70 E-value=0.0061 Score=50.68 Aligned_cols=194 Identities=15% Similarity=0.175 Sum_probs=109.8
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
..|..+++.+++..++.. ..+.+..++..+++ .+. .+... ....++.+.+..+.+...|. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~---~~~~~------~~~~~~~~~~~~~~v~~~~~-----~ 141 (287)
T d1pgua2 81 SQPKVASANNDGFTAVLT-NDDDLLILQSFTGD----IIK---SVRLN------SPGSAVSLSQNYVAVGLEEG-----N 141 (287)
T ss_dssp SCEEEEEECSSSEEEEEE-TTSEEEEEETTTCC----EEE---EEECS------SCEEEEEECSSEEEEEETTT-----S
T ss_pred cceeeeeeccCCceEEEe-ecccceeeecccee----eee---ecccc------ceeeeeeccCcceeeecccc-----c
Confidence 357778888877655444 45677788754443 122 22111 12344554345666643332 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
.+..|+....+.... ...+. ......++++++|...++....+.|..+|......... .+.. .....+
T Consensus 142 ~v~~~~~~~~~~~~~--~~~~~--~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~---~~~~-----h~~~v~ 209 (287)
T d1pgua2 142 TIQVFKLSDLEVSFD--LKTPL--RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS---RWAF-----RTSKIN 209 (287)
T ss_dssp CEEEEETTEEEEEEE--CSSCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC---CSCC-----CSSCEE
T ss_pred eeeeeeccccceeee--eeecc--CCceeEEEeccCccccccccccccccceeecccccccc---cccc-----cccccc
Confidence 488888765444322 21111 24467899999998777777888999999875543311 1110 011245
Q ss_pred eEEEcc----------CCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEE
Q 039428 209 GIVYHP----------DGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLV 278 (335)
Q Consensus 209 Gia~~~----------dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~ 278 (335)
.++++| ++.++++-..+++|+.+++.......... .+ . .....++++.+++.++.++. .+.+++.
T Consensus 210 ~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~--~~-h-~~~V~~v~~~~~~~l~s~g~-D~~v~iW 284 (287)
T d1pgua2 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL--NA-H-KDGVNNLLWETPSTLVSSGA-DACIKRW 284 (287)
T ss_dssp EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET--TS-S-TTCEEEEEEEETTEEEEEET-TSCEEEE
T ss_pred eeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEe--CC-C-CCCeEEEEECCCCEEEEEEC-CCeEEEE
Confidence 566654 44566777778889999987642122222 22 2 23357888888877655544 3556554
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.0047 Score=51.85 Aligned_cols=157 Identities=14% Similarity=0.104 Sum_probs=90.1
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
....+..+++.+++...++.|..+|...++ .+. ...... .....+..+ .+.|+.+..| +.|.
T Consensus 179 ~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~----~~~---~~~~~~---~~v~~~~~~--~~~l~s~s~d------~~i~ 240 (342)
T d2ovrb2 179 RVYSLQFDGIHVVSGSLDTSIRVWDVETGN----CIH---TLTGHQ---SLTSGMELK--DNILVSGNAD------STVK 240 (342)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEETTTCC----EEE---EECCCC---SCEEEEEEE--TTEEEEEETT------SCEE
T ss_pred ccccccCCCCEEEEEeCCCeEEEeecccce----eee---Eecccc---cceeEEecC--CCEEEEEcCC------CEEE
Confidence 344556677777777888999999965444 111 111111 234566665 3455443332 3599
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
.||....+....... .. .....-.++..+++++++.+..+.|..+|.. |+.+..+... ..+ ......+.+
T Consensus 241 iwd~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~--~~~---~~~~~v~~v 311 (342)
T d2ovrb2 241 IWDIKTGQCLQTLQG--PN--KHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL--ESG---GSGGVVWRI 311 (342)
T ss_dssp EEETTTCCEEEEECS--TT--SCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEEC--TTG---GGTCEEEEE
T ss_pred EEecccccccccccc--cc--eeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecc--cCC---CCCCCEEEE
Confidence 999987766533322 11 1111223344456788888888999999976 5554433111 000 011236789
Q ss_pred EEccCCeEEEEECCCC----EEEEEeCCC
Q 039428 211 VYHPDGFLIVIHMCSG----NLFKIDIRK 235 (335)
Q Consensus 211 a~~~dg~Lyvad~~~~----~v~~~d~~~ 235 (335)
+++|++.++++-..+| +|+..|.+-
T Consensus 312 ~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 312 RASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 9999997776665555 577776653
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=97.31 E-value=0.019 Score=50.38 Aligned_cols=145 Identities=17% Similarity=0.266 Sum_probs=84.9
Q ss_pred CcceEEE--eCCCCeEEEEEecCCCCccceEEEEEC-CCCeEE--EEeecCCCccCCCCCCceeECCC-CcEEEEeCCCC
Q 039428 102 ATMGIAV--DRPRNRLLVAFTDVLGNKYSALAAYDL-STWKRL--FLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSS 175 (335)
Q Consensus 102 ~p~Gi~~--d~~~g~l~v~~~D~~~~~~~~v~~~d~-~~~~~~--~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~ 175 (335)
.+.|+++ ++.+|.+|+...+..+. ...+.+.. ..+.+. ....+.- ...+.++++|++ ++|||++.. .
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G~--v~q~~l~~~~~g~v~~~lvr~f~~----~~q~EGCVvDde~~~LyisEE~-~ 201 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEGE--FEQYELNADKNGYISGKKVRAFKM----NSQTEGMAADDEYGSLYIAEED-E 201 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSE--EEEEEEEECTTSSEEEEEEEEEEC----SSCEEEEEEETTTTEEEEEETT-T
T ss_pred cceEEEEEecCCCCeEEEEEEcCCce--EEEEEEEcCCCCceeeEeeeccCC----CCccceEEEeCCCCcEEEecCc-c
Confidence 4789998 66678888766654432 12233332 233322 1112211 345779999987 789999875 5
Q ss_pred eEEEEccC---CcEEEEe---cCCccccccccccccccCeEEEcc----CCeEEEEECCCCEEEEEeCCCCceeEEEEec
Q 039428 176 KIWKVGVE---GQLLSII---RSPLFTAKEWYKNVFGLNGIVYHP----DGFLIVIHMCSGNLFKIDIRKEEEEVKLIEL 245 (335)
Q Consensus 176 ~I~~~d~~---g~~~~~~---~~~~~~~~~~~~~~~~p~Gia~~~----dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~ 245 (335)
.||+++.+ +.....+ ....+. .-+.||++-. +|+|++++.++++...+|..+.-..+..|.+
T Consensus 202 Giw~~~a~~~~~~~~~~i~~~~g~~l~--------~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i 273 (353)
T d1h6la_ 202 AIWKFSAEPDGGSNGTVIDRADGRHLT--------PDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQI 273 (353)
T ss_dssp EEEEEESSTTSCSCCEEEEECSSSSCC--------SCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred ceEEEEeccCCCccceeeecccCcccc--------CCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEEE
Confidence 78999865 1111111 111122 2388998764 4599999999999999998874114445543
Q ss_pred cCCc---CCCCCCeEEEcC
Q 039428 246 RGGS---SLSLGDGLALLS 261 (335)
Q Consensus 246 ~g~~---~~~~pdGia~d~ 261 (335)
.... .....||+++..
T Consensus 274 ~~~~~iDgvs~TDGi~v~~ 292 (353)
T d1h6la_ 274 TDGPETDGTSDTDGIDVLG 292 (353)
T ss_dssp CCCSSSCCCCSCCCEEEEC
T ss_pred ecCCCcCccccCchheEEc
Confidence 2211 123467777653
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=97.29 E-value=0.048 Score=47.68 Aligned_cols=207 Identities=10% Similarity=0.097 Sum_probs=106.2
Q ss_pred eeeeEE-----cCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEE------EeCCCCe-EEEE
Q 039428 51 CETAKW-----DDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIA------VDRPRNR-LLVA 118 (335)
Q Consensus 51 pegia~-----d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~------~d~~~g~-l~v~ 118 (335)
...+|+ +|+..+.+.+-..+.|+++|. +|+. +. .+. . .+++.|. ++. +.. +.++
T Consensus 26 ADDPAIW~n~~~p~~SlI~gTdK~~Gl~vYdL-~G~~----l~---~~~-~----Gr~NNVDvr~~~~l~~-~~~di~va 91 (353)
T d1h6la_ 26 ADDPAIWLDPKNPQNSKLITTNKKSGLAVYSL-EGKM----LH---SYH-T----GKLNNVDIRYDFPLNG-KKVDIAAA 91 (353)
T ss_dssp EEEEEEECCSSCGGGCEEEEEETTSCCEEEET-TCCE----EE---ECC-S----SCEEEEEEEEEEEETT-EEEEEEEE
T ss_pred cCCceEEcCCCCcCccEEEEEcCcCCEEEEcC-CCcE----EE---ecc-c----CCcCccccccccccCC-cceEEEEE
Confidence 445555 445556666666667999995 5761 22 221 1 1333433 331 222 3332
Q ss_pred EecCCCCc-cceEEEEECCCCeEEEEeecCCC-ccCCCCCCceeE--CCC-CcEEEE-eCCCCeEEE--EccC--CcEEE
Q 039428 119 FTDVLGNK-YSALAAYDLSTWKRLFLTQLSGK-SEEKSTADDIAV--DAE-GNAYVT-DVVSSKIWK--VGVE--GQLLS 188 (335)
Q Consensus 119 ~~D~~~~~-~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~p~~~~v--d~~-G~lyV~-d~~~~~I~~--~d~~--g~~~~ 188 (335)
.+...++ .-.++.+|...+.+........+ ......+.|+++ ++. |.+|+. ....+.+.. +..+ +....
T Consensus 92 -snR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~ 170 (353)
T d1h6la_ 92 -SNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISG 170 (353)
T ss_dssp -EECCTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEE
T ss_pred -eCCcCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceee
Confidence 3322111 12356667666654422221111 111346889998 664 655432 233456544 4333 32211
Q ss_pred EecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCce-eEEEE-eccCCcCCCCCCeEEEcC----
Q 039428 189 IIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEE-EVKLI-ELRGGSSLSLGDGLALLS---- 261 (335)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~-~~~~~-~~~g~~~~~~pdGia~d~---- 261 (335)
.+- ..|.. ...+.|+++|.+. +||+++.. ..||+++.+.... ....+ ...++...+-|.|+++-.
T Consensus 171 ~lv-r~f~~------~~q~EGCVvDde~~~LyisEE~-~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~ 242 (353)
T d1h6la_ 171 KKV-RAFKM------NSQTEGMAADDEYGSLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADG 242 (353)
T ss_dssp EEE-EEEEC------SSCEEEEEEETTTTEEEEEETT-TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGG
T ss_pred Eee-eccCC------CCccceEEEeCCCCcEEEecCc-cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCC
Confidence 110 12221 2348899999875 99999975 4689998875311 22222 333333345689999753
Q ss_pred CCcEEEEecCCCeEEEEEc
Q 039428 262 PTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 262 ~g~l~va~~~~~~~~v~~~ 280 (335)
+|-|++++.+.+...+++-
T Consensus 243 ~GylivSsQG~n~f~vydr 261 (353)
T d1h6la_ 243 KGYLLASSQGNSSYAIYER 261 (353)
T ss_dssp CEEEEEEEGGGTEEEEEES
T ss_pred CeEEEEEcCCCCeEEEEec
Confidence 3456666666677777764
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.29 E-value=0.0043 Score=55.70 Aligned_cols=177 Identities=16% Similarity=0.128 Sum_probs=103.0
Q ss_pred CeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCC-----------------
Q 039428 113 NRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVS----------------- 174 (335)
Q Consensus 113 g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~----------------- 174 (335)
..||| .|..+ ++|.++|+++.+....+.++. ...+.++...++++ .||.....
T Consensus 100 rylFV--NDkan---~RVAvIdl~~fkt~kIi~iPn----~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~ 170 (459)
T d1fwxa2 100 RFLFM--NDKAN---TRVARVRCDVMKCDAILEIPN----AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN 170 (459)
T ss_dssp EEEEE--EETTT---TEEEEEETTTTEEEEEEECSS----CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-
T ss_pred eEEEE--EcCCC---ceEEEEECcceeeeEEEecCC----CCCCceeecccCCCeEEEEccCccccccCCCCccccchhh
Confidence 45677 45443 469999999998765555522 35677888887764 78864322
Q ss_pred --CeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCC--------------------------
Q 039428 175 --SKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCS-------------------------- 225 (335)
Q Consensus 175 --~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~-------------------------- 225 (335)
+.+..+|.+..... +. .. ....+.++.+++|| ++|++...+
T Consensus 171 y~~~~t~ID~~tm~V~-~Q---V~------V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie 240 (459)
T d1fwxa2 171 YVNVFTAVDADKWEVA-WQ---VL------VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 240 (459)
T ss_dssp EEEEEEEEETTTTEEE-EE---EE------ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred cceEEEEEecCCceEE-EE---ee------eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhH
Confidence 34566777654332 10 00 12358899999999 888886543
Q ss_pred -----------CEEEEEeCCCC--ceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcC-------CCc
Q 039428 226 -----------GNLFKIDIRKE--EEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESS-------DGW 284 (335)
Q Consensus 226 -----------~~v~~~d~~~~--~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~-------~~~ 284 (335)
+.+-++|.... ......++.+ ..|.|+.++|||+ +||++..++.+.|++.. +..
T Consensus 241 ~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-----KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~ 315 (459)
T d1fwxa2 241 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA 315 (459)
T ss_dssp HHHHHTCSEEETTEEEEECSGG--CSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred HhhhcCCcEEeCCceeecccccCCcceeEEEecC-----CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccC
Confidence 22334443321 0022334432 3599999999997 55556567889999864 110
Q ss_pred E-EEEEeeeecCCCCCcceEEEEe-CCeEEEEe
Q 039428 285 E-TASVVAKFNGPTHRVATAATVK-DGRVYLSH 315 (335)
Q Consensus 285 ~-~~~~~~~~~~p~~~~Pt~va~~-~g~lyV~~ 315 (335)
. ...+.++. +.+..|---+|+ .|+.|.+-
T Consensus 316 ~~~~~~~~e~--elglgPLht~fd~~g~aytsl 346 (459)
T d1fwxa2 316 DPRSAVVAEP--ELGLGPLHTAFDGRGNAYTSL 346 (459)
T ss_dssp -GGGGEEECC--BCCSCEEEEEECTTSEEEEEE
T ss_pred CccccEEeec--ccCcCccccccCCCceEEEEe
Confidence 0 00111111 123446667786 68888753
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.041 Score=45.65 Aligned_cols=190 Identities=11% Similarity=0.064 Sum_probs=100.7
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECC
Q 039428 57 DDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLS 136 (335)
Q Consensus 57 d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~ 136 (335)
......++....++.|..+|..... .+. .+ .+ ..........+...+..+..| +.|..||.+
T Consensus 144 ~~~~~~~~~~~~d~~i~~~d~~~~~----~~~---~~--~~---~~~~~~~~~~~~~~l~s~~~d------g~i~~~d~~ 205 (342)
T d2ovrb2 144 QYDGRRVVSGAYDFMVKVWDPETET----CLH---TL--QG---HTNRVYSLQFDGIHVVSGSLD------TSIRVWDVE 205 (342)
T ss_dssp EECSSCEEEEETTSCEEEEEGGGTE----EEE---EE--CC---CSSCEEEEEECSSEEEEEETT------SCEEEEETT
T ss_pred ccccceeeeecCCCeEEEeecccce----eeE---EE--cC---cccccccccCCCCEEEEEeCC------CeEEEeecc
Confidence 3344455555667788888743222 011 11 11 112233333323444443332 359999999
Q ss_pred CCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCccccccccccccccCeEEEccC
Q 039428 137 TWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKNVFGLNGIVYHPD 215 (335)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d 215 (335)
.++........ ...... +.++++++++.+..+.|..++.... ....+... . .....-.++..+
T Consensus 206 ~~~~~~~~~~~-----~~~v~~--~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--~-------~~~~~~~~~~~~ 269 (342)
T d2ovrb2 206 TGNCIHTLTGH-----QSLTSG--MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP--N-------KHQSAVTCLQFN 269 (342)
T ss_dssp TCCEEEEECCC-----CSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEEECST--T-------SCSSCEEEEEEC
T ss_pred cceeeeEeccc-----ccceeE--EecCCCEEEEEcCCCEEEEEeccccccccccccc--c-------eeeeceeecccC
Confidence 88766433221 122233 4445667788788899999997643 33322111 0 011223445556
Q ss_pred CeEEEEECCCCEEEEEeCCCCceeEEEEeccCC-cCCCCCCeEEEcCCCcEEEEecCCC----eEEEEEcC
Q 039428 216 GFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGG-SSLSLGDGLALLSPTKLVVAGNPYP----SARLVESS 281 (335)
Q Consensus 216 g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~-~~~~~pdGia~d~~g~l~va~~~~~----~~~v~~~~ 281 (335)
+.++++-..++.|..+|+..++ .++.+..... ..-.....+++.+++.+++++...+ .+++.+.+
T Consensus 270 ~~~~~s~s~Dg~i~iwd~~tg~-~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 270 KNFVITSSDDGTVKLWDLKTGE-FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp SSEEEEEETTSEEEEEETTTCC-EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CCeeEEEcCCCEEEEEECCCCC-EEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 6666777788999999998764 5555432110 0012245788888887776644222 35665543
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.00 E-value=0.055 Score=45.09 Aligned_cols=175 Identities=13% Similarity=0.086 Sum_probs=99.6
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEE
Q 039428 55 KWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYD 134 (335)
Q Consensus 55 a~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d 134 (335)
...+++++++....++.|..+|..+++. +. ..... ......+.+++....+++...| +.|..+|
T Consensus 166 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~----~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~d------~~i~i~d 229 (355)
T d1nexb2 166 TVSGHGNIVVSGSYDNTLIVWDVAQMKC----LY---ILSGH---TDRIYSTIYDHERKRCISASMD------TTIRIWD 229 (355)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEE----EE---EECCC---SSCEEEEEEETTTTEEEEEETT------SCEEEEE
T ss_pred ccccccceeeeecccceeeeeecccccc----ee---eeecc---ccccccccccccceeeeccccc------ceEEeee
Confidence 3455677777777788999998644431 11 11111 1245678888755555554332 3599999
Q ss_pred CCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeE-EEc
Q 039428 135 LSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGI-VYH 213 (335)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gi-a~~ 213 (335)
.+++........ . ....+.++++ ++.+++.+..+.|..+|.+....... +. ......+ ++.
T Consensus 230 ~~~~~~~~~~~~--h---~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~----~~-------~~~~~~~~~~~ 291 (355)
T d1nexb2 230 LENGELMYTLQG--H---TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS----YH-------HTNLSAITTFY 291 (355)
T ss_dssp TTTCCEEEEECC--C---SSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEE----EE-------CTTCCCCCEEE
T ss_pred cccccccccccc--c---cccccccccc--cceeeeeecccccccccccccceecc----cc-------cCCceEEEEEc
Confidence 998877643322 1 2334567665 45777778889999999875433211 11 0113333 456
Q ss_pred cCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEe
Q 039428 214 PDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAG 269 (335)
Q Consensus 214 ~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~ 269 (335)
++++++++.. .++|..+|++.++ .+... ..+ . -.....++++++ .++++.
T Consensus 292 ~~~~~l~~g~-d~~i~vwd~~tg~-~~~~~-~~~-~-~~~V~~v~~~~~-~~~~~~ 341 (355)
T d1nexb2 292 VSDNILVSGS-ENQFNIYNLRSGK-LVHAN-ILK-D-ADQIWSVNFKGK-TLVAAV 341 (355)
T ss_dssp ECSSEEEEEE-TTEEEEEETTTCC-BCCSC-TTT-T-CSEEEEEEEETT-EEEEEE
T ss_pred CCCCEEEEEe-CCEEEEEECCCCC-EEEEE-ecC-C-CCCEEEEEEcCC-eEEEEE
Confidence 6777776654 6789999988763 22111 112 1 111345677764 455553
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.99 E-value=0.013 Score=51.48 Aligned_cols=151 Identities=11% Similarity=0.099 Sum_probs=88.8
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC--CCcceEEEeCCCCeEEEEE-ecCCCCc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG--NATMGIAVDRPRNRLLVAF-TDVLGNK 126 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~--~~p~Gi~~d~~~g~l~v~~-~D~~~~~ 126 (335)
+..+++++++| .+++...++.|..||..+++. +.. +-....+.+ .....++++| +++++++. .|.. .
T Consensus 186 ~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~----~~~--~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t-~- 255 (393)
T d1sq9a_ 186 FATSVDISERG-LIATGFNNGTVQISELSTLRP----LYN--FESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNS-F- 255 (393)
T ss_dssp CCCEEEECTTS-EEEEECTTSEEEEEETTTTEE----EEE--EECCC---CCCCCEEEEEECS-STTEEEEEEEETT-E-
T ss_pred cEEEEEECCCC-EEEEEeCCCcEEEEeeccccc----ccc--cccccccccccceEEEccccc-ccceeeeecCCCC-c-
Confidence 45689999987 555557789999999654431 111 111111111 3468899998 55555543 2321 1
Q ss_pred cceEEEEECCCCeEEEEeecCCCc-------cC-CCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCcccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKS-------EE-KSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTA 197 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~-------~~-~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~ 197 (335)
..|..||.++++........... .+ ....+.+++.|+|++.++.+..+.|..+|.+ |+.+..+... ..
T Consensus 256 -~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH--~~ 332 (393)
T d1sq9a_ 256 -GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH--CD 332 (393)
T ss_dssp -EEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC--GG
T ss_pred -ceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCc--CC
Confidence 24788999988766433211000 00 2345779999999999999999999999976 4444433210 00
Q ss_pred ccccccccccCeEEEccCCe
Q 039428 198 KEWYKNVFGLNGIVYHPDGF 217 (335)
Q Consensus 198 ~~~~~~~~~p~Gia~~~dg~ 217 (335)
........++++++|.
T Consensus 333 ----~v~~~~~~~~~~~~~~ 348 (393)
T d1sq9a_ 333 ----DIEIEEDILAVDEHGD 348 (393)
T ss_dssp ----GCSSGGGCCCBCTTSC
T ss_pred ----cccCCccEEEECCCCC
Confidence 0112245678888874
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.87 E-value=0.087 Score=43.31 Aligned_cols=117 Identities=8% Similarity=-0.066 Sum_probs=64.0
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-.+++|+|++++++++..+++|..||...+.. .. .+....+. ......+++.+.++.++++ +... ..
T Consensus 13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~----~~--~~~~~~~h-~~~V~~v~f~~~~~~~l~s-g~~d----~~ 80 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK----NV--DLLQSLRY-KHPLLCCNFIDNTDLQIYV-GTVQ----GE 80 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----EE--EEEEEEEC-SSCEEEEEEEESSSEEEEE-EETT----SC
T ss_pred CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc----ce--EEEEecCC-CCCEEEEEEeCCCCCEEEE-cccc----cc
Confidence 457999999999888888899999887533321 11 12111111 1245788887645555443 2221 34
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEcc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGV 182 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~ 182 (335)
|..++...+.......... ..........+++..+++.+..+.+..+|.
T Consensus 81 v~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~ 129 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALTNNE----ANLGICRICKYGDDKLIAASWDGLIEVIDP 129 (342)
T ss_dssp EEEECSSSSSSEEECBSCC----CCSCEEEEEEETTTEEEEEETTSEEEEECH
T ss_pred eeeeecccccccccccccc----cccccccccccccccccccccccccceeec
Confidence 8889987664432221110 111112223334456666566666666664
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.86 E-value=0.051 Score=44.46 Aligned_cols=55 Identities=7% Similarity=-0.116 Sum_probs=31.5
Q ss_pred hhhhhhhhcCCCcee-EEEcCCCcceeeeEEcCCCCEEEEE-ecC-----CeEEEEECCCCC
Q 039428 27 SIELAIAMAKPATHV-YQYHSPSFLCETAKWDDVGRRFLVS-FLD-----GGVGQVLVPDEY 81 (335)
Q Consensus 27 ~~~~~~~~~d~~~~~-~~~~~~~~~pegia~d~~g~~~~~~-~~~-----~~I~~~d~~~g~ 81 (335)
..++.+++.+..... .++......-.+++|+|||+.++.. ..+ ..|++++..+++
T Consensus 18 ~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~ 79 (281)
T d1k32a2 18 VCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE 79 (281)
T ss_dssp EETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred EeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence 344455555444332 3343333345788999999866554 322 359999864443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.77 E-value=0.14 Score=44.15 Aligned_cols=126 Identities=10% Similarity=-0.004 Sum_probs=71.3
Q ss_pred eeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecCC-CCcc
Q 039428 51 CETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDVL-GNKY 127 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~-~~~~ 127 (335)
-.+.++.++|.++++. .....+.++|+.+.. |...+.+.. +.-++.++.. +|++|+...... +...
T Consensus 78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~----------w~~~~~~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~ 146 (387)
T d1k3ia3 78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS----------WIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFE 146 (387)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTE----------EEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCC
T ss_pred eeEEEEecCCcEEEeecCCCcceeEecCccCc----------ccccccccccccccceeeec-CCceeeecccccccccc
Confidence 3467889999988887 555789999964332 333333221 3345677764 789998632111 1112
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCC------CC--Cc-eeECCCCcEEEEeCCCCeEEEEccCCcEE
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKS------TA--DD-IAVDAEGNAYVTDVVSSKIWKVGVEGQLL 187 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~------~p--~~-~~vd~~G~lyV~d~~~~~I~~~d~~g~~~ 187 (335)
..+.+||+.+++-...-.......... .. .. +..-++|++|+.......++..++.....
T Consensus 147 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~ 215 (387)
T d1k3ia3 147 KNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV 215 (387)
T ss_dssp CCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred ceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence 458999999886543222111100000 00 01 22334677888776677788888775543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.74 E-value=0.11 Score=42.37 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=65.1
Q ss_pred EEcCC--CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 55 KWDDV--GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 55 a~d~~--g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
.++|+ |+.++.. ..+.|+++|..+++ .. ++...++ ...+.+++|++..|..+...........|++
T Consensus 5 ~~sPdi~G~~v~f~-~~~dl~~~d~~~g~-----~~--~Lt~~~~----~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~ 72 (281)
T d1k32a2 5 LLNPDIHGDRIIFV-CCDDLWEHDLKSGS-----TR--KIVSNLG----VINNARFFPDGRKIAIRVMRGSSLNTADLYF 72 (281)
T ss_dssp CEEEEEETTEEEEE-ETTEEEEEETTTCC-----EE--EEECSSS----EEEEEEECTTSSEEEEEEEESTTCCEEEEEE
T ss_pred ccCCCCCCCEEEEE-eCCcEEEEECCCCC-----EE--EEecCCC----cccCEEECCCCCEEEEEEeeCCCCCceEEEE
Confidence 34455 6655444 45679999865444 11 2322222 3457788985555554322222222246999
Q ss_pred EECCCCeEEEEeecCCC-ccCCCCCCceeECCCCc-EEEEeCC-----CCeEEEEccCCcEEE
Q 039428 133 YDLSTWKRLFLTQLSGK-SEEKSTADDIAVDAEGN-AYVTDVV-----SSKIWKVGVEGQLLS 188 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~-~~~~~~p~~~~vd~~G~-lyV~d~~-----~~~I~~~d~~g~~~~ 188 (335)
++..+++.......... ..........+..|+|+ ++++... ...++.++.++....
T Consensus 73 ~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (281)
T d1k32a2 73 YNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV 135 (281)
T ss_dssp EETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE
T ss_pred EEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE
Confidence 99999876633221110 01123445678899986 6665432 234566666655443
|
| >d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Tachylectin-2 family: Tachylectin-2 domain: Tachylectin-2 species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=96.00 E-value=0.01 Score=47.02 Aligned_cols=154 Identities=10% Similarity=0.041 Sum_probs=82.5
Q ss_pred eeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC----CCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 53 TAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG----NATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 53 gia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~----~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
-|+++|+|++|.|- ++.+|+=.++.-.- . .|.+.....| +.-.-|.+|| +|.||+++ + .
T Consensus 44 ~i~fsP~G~LyaVr--~~~lY~Gp~~s~~n-----q--~wf~~atrIG~ggWn~FkflffdP-~G~LyaVt-~------~ 106 (235)
T d1tl2a_ 44 FLFLSPGGELYGVL--NDKIYKGTPPTHDN-----D--NWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAVS-K------D 106 (235)
T ss_dssp EEEECTTSCEEEEE--TTEEEEESCCCSTT-----C--CHHHHCEEEECSCGGGCSEEEECT-TSCEEEEE-T------T
T ss_pred EEEECCCCcEEEEE--CCeEEECCCCCcch-----H--HHHHhhhhcccCcccceEEEEECC-CceEEEec-C------c
Confidence 48999999988875 56888885332210 1 1221111111 2336789998 89999975 2 2
Q ss_pred eEEEEECCCCeE-EEEeecCCCcc-CCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccc--cccc
Q 039428 129 ALAAYDLSTWKR-LFLTQLSGKSE-EKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEW--YKNV 204 (335)
Q Consensus 129 ~v~~~d~~~~~~-~~~~~~~~~~~-~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~--~~~~ 204 (335)
.|++=-+-+.+- -+.......++ +=+...-+-+||+|.+|.... +++++-.|-.+.- +.++..... ...-
T Consensus 107 ~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~~--~~l~k~~pP~~~~----d~WL~~st~igr~~w 180 (235)
T d1tl2a_ 107 KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHG--QQFYKALPPVSNQ----DNWLARATKIGQGGW 180 (235)
T ss_dssp EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEET--TEEEEECCCSSTT----CCHHHHCEEEESSSG
T ss_pred ceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCceEEEEEC--CcEEEcCCCCCCC----chhhhhhhhhccCcc
Confidence 377755543321 01000000111 012233477899999998843 3587776532110 011111000 0111
Q ss_pred cccCeEEEccCCeEEEEECCCCEEEEE
Q 039428 205 FGLNGIVYHPDGFLIVIHMCSGNLFKI 231 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyvad~~~~~v~~~ 231 (335)
..++.|.|+|||+|+-.. ++.+|+=
T Consensus 181 ~~~~fi~Fs~dG~L~~v~--~g~~Y~~ 205 (235)
T d1tl2a_ 181 DTFKFLFFSSVGTLFGVQ--GGKFYED 205 (235)
T ss_dssp GGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred cCceEEEECCCCcEEEEe--CCeEEec
Confidence 236799999999999773 3667764
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.36 E-value=0.91 Score=41.64 Aligned_cols=103 Identities=11% Similarity=0.122 Sum_probs=62.4
Q ss_pred ceEEEeCCCCeEEEEEecCC------------------------------CCccceEEEEECCCCeEEEEeecCCCccCC
Q 039428 104 MGIAVDRPRNRLLVAFTDVL------------------------------GNKYSALAAYDLSTWKRLFLTQLSGKSEEK 153 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~------------------------------~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 153 (335)
.+.++||+.+.+|+...+.. ......|..+|+.++++++..+...+.
T Consensus 384 ~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~--- 460 (560)
T d1kv9a2 384 HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHW--- 460 (560)
T ss_dssp SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSC---
T ss_pred ccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCC---
Confidence 57889998889998754321 000246889999999999877663221
Q ss_pred CCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeEEEccCCeEEEE
Q 039428 154 STADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVI 221 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyva 221 (335)
..+......|-+| +.+..+.++.+|.+ |+.+..+..+ ......-+++.-||.-||+
T Consensus 461 --~gg~l~TagglVF-~G~~dg~l~A~Da~tGe~LW~~~l~---------~~~~~~P~ty~~dGkqyv~ 517 (560)
T d1kv9a2 461 --NGGTLSTAGNLVF-QGTAAGQMHAYSADKGEALWQFEAQ---------SGIVAAPMTFELAGRQYVA 517 (560)
T ss_dssp --CCCEEEETTTEEE-EECTTSEEEEEETTTCCEEEEEECS---------SCCCSCCEEEEETTEEEEE
T ss_pred --CCceeEECCCEEE-EECCCCcEEEEECCCCcEeEEEECC---------CCccccCEEEEECCEEEEE
Confidence 1122233345455 45678899999986 5655432211 1122344777778865554
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.26 E-value=0.21 Score=44.42 Aligned_cols=125 Identities=9% Similarity=0.045 Sum_probs=72.8
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc--EEEEe-------CCCCeEEEEccCCcEEEEecCCcccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN--AYVTD-------VVSSKIWKVGVEGQLLSIIRSPLFTAKE 199 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~--lyV~d-------~~~~~I~~~d~~g~~~~~~~~~~~~~~~ 199 (335)
.++++|+++++.....+............++.+.|||+ +|.++ +..+.++.+|.+++....+ ..
T Consensus 37 ~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l-----~~-- 109 (470)
T d2bgra1 37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE-----ER-- 109 (470)
T ss_dssp CEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-----SC--
T ss_pred cEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccccc-----cc--
Confidence 48999999987654333211111124467899999997 44444 2346788899887765421 11
Q ss_pred ccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCC---------------cCCCCCCeEEEcCCC
Q 039428 200 WYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGG---------------SSLSLGDGLALLSPT 263 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~---------------~~~~~pdGia~d~~g 263 (335)
.........++||| .+.+. .++.++..+..+++ ..+... .+. ..+....++.+.|||
T Consensus 110 ---~~~~~~~~~~SPDG~~ia~~--~~~~l~~~~~~~g~-~~~~t~-~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDG 182 (470)
T d2bgra1 110 ---IPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLP-SYRITW-TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 182 (470)
T ss_dssp ---CCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSC-CEECCS-CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS
T ss_pred ---CCccccccccccCcceeeEe--ecccceEEECCCCc-eeeeee-ccCCCcccccccceeeeeeecCCccccEECCCC
Confidence 11235567899999 45443 35578888887763 222211 110 012345678899998
Q ss_pred cEEE
Q 039428 264 KLVV 267 (335)
Q Consensus 264 ~l~v 267 (335)
+.++
T Consensus 183 k~ia 186 (470)
T d2bgra1 183 TFLA 186 (470)
T ss_dssp SEEE
T ss_pred Cccc
Confidence 6333
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.25 E-value=0.75 Score=39.15 Aligned_cols=129 Identities=16% Similarity=0.025 Sum_probs=77.4
Q ss_pred cceEEEeCCCCeEEEEEecCC----CC--ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-CC
Q 039428 103 TMGIAVDRPRNRLLVAFTDVL----GN--KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-SS 175 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~----~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-~~ 175 (335)
+...++.+.+|+||+...-.. +. ....+.+||+++++.........+ ...+..+.++..+|++|+.... ..
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~--~~~~~~~~~~~~~g~i~v~Gg~~~~ 98 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK--HDMFCPGISMDGNGQIVVTGGNDAK 98 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS--CCCSSCEEEECTTSCEEEECSSSTT
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCC--cccceeEEEEecCCcEEEeecCCCc
Confidence 345565556899999643110 11 113477899998754321111111 1234557889999999998643 46
Q ss_pred eEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECC------CCEEEEEeCCCCceeEEEE
Q 039428 176 KIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC------SGNLFKIDIRKEEEEVKLI 243 (335)
Q Consensus 176 ~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~------~~~v~~~d~~~~~~~~~~~ 243 (335)
.+.++|+....-..... .. ....-.+.++.+||.+|+.-.. .+.+.++|+... ....+
T Consensus 99 ~~~~yd~~~~~w~~~~~--~~------~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~--~W~~~ 162 (387)
T d1k3ia3 99 KTSLYDSSSDSWIPGPD--MQ------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK--TWTSL 162 (387)
T ss_dssp CEEEEEGGGTEEEECCC--CS------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT--EEEEE
T ss_pred ceeEecCccCccccccc--cc------ccccccceeeecCCceeeeccccccccccceeeeecCCCC--ceeec
Confidence 88999998665442211 11 1123467888889988876432 246899999987 45444
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.19 E-value=1.2 Score=41.03 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=46.3
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
.|+++.. + .+|+...+++|+.+|..+|+ +..+..+. .+.........-.+. ++.+|+............|.
T Consensus 109 rg~a~~~-~-~i~~~~~~g~l~alda~tG~----~~w~~~~~-~~~~~~~~t~~p~v~--~~~vivg~~~~~~~~~G~v~ 179 (571)
T d2ad6a1 109 RGLAYGA-G-QIVKKQANGHLLALDAKTGK----INWEVEVC-DPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVN 179 (571)
T ss_dssp CCCEEET-T-EEEEECTTSEEEEEETTTCC----EEEEEECC-CGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEE
T ss_pred CcceeeC-C-eEEEEeCCCcEEeeehhhhh----hhcccccc-ccccccceeecCeEe--CCeEEEeeccccccccCcEE
Confidence 5677763 3 45556568999999987676 12211111 111100011122333 58888854321111114699
Q ss_pred EEECCCCeEEEEee
Q 039428 132 AYDLSTWKRLFLTQ 145 (335)
Q Consensus 132 ~~d~~~~~~~~~~~ 145 (335)
.||.++|++++...
T Consensus 180 a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 180 AFDLKTGELKWRAF 193 (571)
T ss_dssp EEETTTCCEEEEEE
T ss_pred EEECCCCcEEEEEe
Confidence 99999999987654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.11 E-value=0.63 Score=37.52 Aligned_cols=180 Identities=13% Similarity=0.022 Sum_probs=93.4
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEE
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKV 180 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~ 180 (335)
.+..+.+.+ ++.+++...+ ..+..++..+++........ ....++.++++ +.++....+.|..+
T Consensus 82 ~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~v~~~ 146 (287)
T d1pgua2 82 QPKVASANN-DGFTAVLTND------DDLLILQSFTGDIIKSVRLN--------SPGSAVSLSQNYVAVGLEEGNTIQVF 146 (287)
T ss_dssp CEEEEEECS-SSEEEEEETT------SEEEEEETTTCCEEEEEECS--------SCEEEEEECSSEEEEEETTTSCEEEE
T ss_pred ceeeeeecc-CCceEEEeec------ccceeeeccceeeeeecccc--------ceeeeeeccCcceeeeccccceeeee
Confidence 345666664 5666554322 34778888777665443331 12245566664 55555555667777
Q ss_pred ccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc
Q 039428 181 GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL 260 (335)
Q Consensus 181 d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d 260 (335)
+......... +..+ .......++++|+|..+++-..+++|..+|....+ ...-...+ + -.....+++.
T Consensus 147 ~~~~~~~~~~----~~~~----~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~-h-~~~v~~~~~~ 214 (287)
T d1pgua2 147 KLSDLEVSFD----LKTP----LRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE--VKTSRWAF-R-TSKINAISWK 214 (287)
T ss_dssp ETTEEEEEEE----CSSC----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEECCSCC-C-SSCEEEEEEC
T ss_pred eccccceeee----eeec----cCCceeEEEeccCccccccccccccccceeecccc--cccccccc-c-ccccceeeec
Confidence 7653322211 1110 11236789999999655555678889999998762 21111111 1 0112334433
Q ss_pred ----------CCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe-CCeEE
Q 039428 261 ----------SPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK-DGRVY 312 (335)
Q Consensus 261 ----------~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~-~g~ly 312 (335)
.++.++++....+.+++.+.....+. ...+... ....+++++. +++|+
T Consensus 215 p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~---~~~~~~h-~~~V~~v~~~~~~~l~ 273 (287)
T d1pgua2 215 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI---IKALNAH-KDGVNNLLWETPSTLV 273 (287)
T ss_dssp CCC------CCSCCEEEEEETTSCEEEEESSCTTCC---EEETTSS-TTCEEEEEEEETTEEE
T ss_pred ccccccccccCCCCeeEeecCCCeEEEEECCCCCeE---EEEeCCC-CCCeEEEEECCCCEEE
Confidence 34566666554466888776443221 2222111 1224567764 66544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.96 E-value=0.15 Score=45.38 Aligned_cols=155 Identities=10% Similarity=0.102 Sum_probs=83.6
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC--CCCcceEEEeCCCCeEEEEEecCC---CC
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV--GNATMGIAVDRPRNRLLVAFTDVL---GN 125 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~--~~~p~Gi~~d~~~g~l~v~~~D~~---~~ 125 (335)
..++.|.+++..+|. .++.|+.+|..+++ +. .++....+. ......+.++|+...|........ ..
T Consensus 19 ~~~~~W~~d~~~~~~--~~~~~~~~~~~t~~------~~-~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s 89 (470)
T d2bgra1 19 LYSLRWISDHEYLYK--QENNILVFNAEYGN------SS-VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHS 89 (470)
T ss_dssp CCCCEECSSSEEEEE--SSSCEEEEETTTCC------EE-EEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSC
T ss_pred ccCCEeCCCCEEEEE--cCCcEEEEECCCCC------EE-EEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeec
Confidence 457789888875553 46789999976554 11 233222221 134578899985454444321110 01
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecC-C----cccc-cc
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRS-P----LFTA-KE 199 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~-~----~~~~-~~ 199 (335)
....++.+|.++++... +... ......+.+.|||...+. ..++.++..+..+.....+.. . .+.. ++
T Consensus 90 ~~~~~~l~d~~~~~~~~---l~~~---~~~~~~~~~SPDG~~ia~-~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d 162 (470)
T d2bgra1 90 YTASYDIYDLNKRQLIT---EERI---PNNTQWVTWSPVGHKLAY-VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITD 162 (470)
T ss_dssp EEEEEEEEETTTTEECC---SSCC---CTTEEEEEECSSTTCEEE-EETTEEEEESSTTSCCEECCSCCBTTTEEESBCC
T ss_pred cCceEEEEECCCCcccc---cccC---CccccccccccCcceeeE-eecccceEEECCCCceeeeeeccCCCcccccccc
Confidence 11468899999987642 2111 234456888999963222 234578888876554332111 0 0000 00
Q ss_pred ---ccccccccCeEEEccCC-eEEEE
Q 039428 200 ---WYKNVFGLNGIVYHPDG-FLIVI 221 (335)
Q Consensus 200 ---~~~~~~~p~Gia~~~dg-~Lyva 221 (335)
.........++.++||| +|.+.
T Consensus 163 ~~~~~~~~~~~~~~~wSPDGk~ia~~ 188 (470)
T d2bgra1 163 WVYEEEVFSAYSALWWSPNGTFLAYA 188 (470)
T ss_dssp HHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred eeeeeeecCCccccEECCCCCcccee
Confidence 01122336789999999 55544
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=94.92 E-value=1.4 Score=40.65 Aligned_cols=43 Identities=16% Similarity=-0.060 Sum_probs=30.6
Q ss_pred ceEEEeCCCCeEEEEEecCCC--------C--ccceEEEEECCCCeEEEEeec
Q 039428 104 MGIAVDRPRNRLLVAFTDVLG--------N--KYSALAAYDLSTWKRLFLTQL 146 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~--------~--~~~~v~~~d~~~~~~~~~~~~ 146 (335)
..+.+|++.+.+|+...+... + -.+.|+.+|+++|++++..+.
T Consensus 244 ~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~ 296 (596)
T d1w6sa_ 244 GWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK 296 (596)
T ss_dssp SCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred cccccccCCCeeecccccccccccccccccccccccccccccccccccccccc
Confidence 567899989999997543220 0 025799999999999876543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.90 E-value=0.18 Score=41.21 Aligned_cols=192 Identities=10% Similarity=0.072 Sum_probs=91.1
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC-CCCcceEEEeCCCCeEEEEEecCCCCccceEEEE
Q 039428 55 KWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV-GNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAY 133 (335)
Q Consensus 55 a~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~-~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~ 133 (335)
.+.++...++....++.+..+|...... ... ......... ......+.+....+.+..+..| ..|..|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~wd~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~~i~~~ 175 (342)
T d1yfqa_ 107 ICKYGDDKLIAASWDGLIEVIDPRNYGD----GVI-AVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN------SQVQWF 175 (342)
T ss_dssp EEEETTTEEEEEETTSEEEEECHHHHTT----BCE-EEEESCSSSSSSCCCEEEEEECSSEEEEEEST------TEEEEE
T ss_pred ccccccccccccccccccceeecccccc----cee-eecccccccccceeeeeeeeccCCceeeecCC------CcEEEE
Confidence 3344445555556677777776422221 000 011111110 0122344455434445443332 358889
Q ss_pred ECCCCeEE--EEeecCCCccCCCCCCceeEC-CCCcEEEEeCCCCeEEEEccCCcEEEE-------ecCCcccccccccc
Q 039428 134 DLSTWKRL--FLTQLSGKSEEKSTADDIAVD-AEGNAYVTDVVSSKIWKVGVEGQLLSI-------IRSPLFTAKEWYKN 203 (335)
Q Consensus 134 d~~~~~~~--~~~~~~~~~~~~~~p~~~~vd-~~G~lyV~d~~~~~I~~~d~~g~~~~~-------~~~~~~~~~~~~~~ 203 (335)
|....+.. ...... . .......... .++..+++.+..+++..++.+...... +...... ......
T Consensus 176 ~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 250 (342)
T d1yfqa_ 176 RLPLCEDDNGTIEESG---L-KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN-LKDTNL 250 (342)
T ss_dssp ESSCCTTCCCEEEECS---C-SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC-TTCCSS
T ss_pred ecccCcccceeeeecc---c-ccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeec-cCCCcc
Confidence 98655322 111110 0 1122223333 346667776777777766654322110 0000000 000112
Q ss_pred ccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 204 VFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 204 ~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
....+.|+++|++.++++-..++.|...|.+..+ .+..+... ....-+++.++|++.++
T Consensus 251 ~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~-~l~~~~~~-----~~~~~~~~s~~~~~l~~ 309 (342)
T d1yfqa_ 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK-KIKNFAKF-----NEDSVVKIACSDNILCL 309 (342)
T ss_dssp CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-EEEECCCC-----SSSEEEEEEECSSEEEE
T ss_pred cccceeEEecCCccEEEEECCCCEEEEEECCCCc-EEEEecCC-----CCCEEEEEEeCCCEEEE
Confidence 2235789999999777777788999999999873 33333211 11234677777765444
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.51 E-value=1.8 Score=39.80 Aligned_cols=202 Identities=18% Similarity=0.133 Sum_probs=103.0
Q ss_pred ceEEEeCCCCeEEEEEecCC----------CC--------ccceEEEEECCCCeEEEEeecCCCc--------c------
Q 039428 104 MGIAVDRPRNRLLVAFTDVL----------GN--------KYSALAAYDLSTWKRLFLTQLSGKS--------E------ 151 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~----------~~--------~~~~v~~~d~~~~~~~~~~~~~~~~--------~------ 151 (335)
..+++|++.+.+|+...... +. -.+.|+.+|.++|++++..+..... +
T Consensus 249 ~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p~l~d~ 328 (582)
T d1flga_ 249 QSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDY 328 (582)
T ss_dssp SCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEE
T ss_pred ccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhhccccccccccccccccccccccc
Confidence 45899998999999753211 10 0257999999999998765432110 0
Q ss_pred ----CCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEE---EEec--------CC----ccc------------cccc
Q 039428 152 ----EKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLL---SIIR--------SP----LFT------------AKEW 200 (335)
Q Consensus 152 ----~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~---~~~~--------~~----~~~------------~~~~ 200 (335)
+...+--+..+++|.+|+.|..++.+....+..... .... .. .+. .|.
T Consensus 329 ~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~- 407 (582)
T d1flga_ 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP- 407 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC-
T ss_pred ccccccccceeEeecccccEEeecccCCcccccccccCccccccccccccccceeccccccccccccccccceEEECCC-
Confidence 000111222345667777777766655432221100 0000 00 000 000
Q ss_pred cccccccCeEEEccCC-eEEEEECC--------------------------------CCEEEEEeCCCCceeEEEEeccC
Q 039428 201 YKNVFGLNGIVYHPDG-FLIVIHMC--------------------------------SGNLFKIDIRKEEEEVKLIELRG 247 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg-~Lyvad~~--------------------------------~~~v~~~d~~~~~~~~~~~~~~g 247 (335)
......-.+.+++|+. .+|+.... .++|+.+|+.+++ .+-......
T Consensus 408 ~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~-i~W~~~~~~ 486 (582)
T d1flga_ 408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGK-VVWEHKEHL 486 (582)
T ss_dssp TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCC-EEEEEEESS
T ss_pred ccCCcccccceecCCCCceeeeccccccccccccccccccccccccCccccccccCCCCeEEEEcCCCCc-EEeecCCCC
Confidence 1122345678899865 67764321 2578999998874 333333221
Q ss_pred CcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCC--CCCcceEEEE-eCCeEEEEeccC
Q 039428 248 GSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGP--THRVATAATV-KDGRVYLSHLLG 318 (335)
Q Consensus 248 ~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p--~~~~Pt~va~-~~g~lyV~~~~~ 318 (335)
..--|......|.+|+. ..++.++.++...| +.+=++..| ....| +++ .+|+-||+-..|
T Consensus 487 ----p~~~g~lstagglVF~G-t~dg~l~A~Da~TG----e~LW~~~~~~~~~~~P--~ty~~~G~qYv~i~ag 549 (582)
T d1flga_ 487 ----PLWAGVLATAGNLVFTG-TGDGYFKAFDAKSG----KELWKFQTGSGIVSPP--ITWEQDGEQYLGVTVG 549 (582)
T ss_dssp ----CCCSCCEEETTTEEEEE-CTTSEEEEEETTTC----CEEEEEECSSCCCSCC--EEEEETTEEEEEEEEC
T ss_pred ----CCccceeEEcCCeEEEe-CCCCeEEEEECCCC----cEeEEEECCCCccccC--EEEEECCEEEEEEEeC
Confidence 12234433444556654 43467888887766 333223223 23334 444 488989744333
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=94.45 E-value=1.8 Score=39.59 Aligned_cols=43 Identities=23% Similarity=0.119 Sum_probs=29.9
Q ss_pred cceEEEeCCCCeEEEEEecCC-----------CCc--cceEEEEECCCCeEEEEee
Q 039428 103 TMGIAVDRPRNRLLVAFTDVL-----------GNK--YSALAAYDLSTWKRLFLTQ 145 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~-----------~~~--~~~v~~~d~~~~~~~~~~~ 145 (335)
-..+.+|++.+.+|+...... +.. .+.|+.+|.+++++++...
T Consensus 232 W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q 287 (560)
T d1kv9a2 232 WDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ 287 (560)
T ss_dssp CSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred ccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEe
Confidence 356889998899998643211 100 3679999999999986554
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=94.36 E-value=1.9 Score=39.69 Aligned_cols=172 Identities=12% Similarity=0.062 Sum_probs=88.6
Q ss_pred eeeEEcCC----CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEe-ecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 52 ETAKWDDV----GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLV-KEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 52 egia~d~~----g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~-~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
.|+++.++ +.++|+...+++|+.+|..+|+ ++.+ +- ............-.+. ++.+||.........
T Consensus 109 RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~----~~w~--~~~~d~~~~~~~t~~P~v~--~~~vivg~~~~e~~~ 180 (596)
T d1w6sa_ 109 RGLAYWPGDGKTPALILKTQLDGNVAALNAETGE----TVWK--VENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGV 180 (596)
T ss_dssp CCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC----EEEE--EECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTC
T ss_pred ceeEEecCCCCCceEEEEEeCCCCeEeeccccCc----eecc--ccccccccccccccCCcEE--CCeEEEeeccccccc
Confidence 46776443 2356666678999999987676 1221 11 1111111111222343 688988432211011
Q ss_pred cceEEEEECCCCeEEEEeecCCCc---------------------------------cCCCCCCceeECCC-CcEEEEeC
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKS---------------------------------EEKSTADDIAVDAE-GNAYVTDV 172 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~---------------------------------~~~~~p~~~~vd~~-G~lyV~d~ 172 (335)
...|..||.++|++++......+. .+...-..+++|++ |.+|+...
T Consensus 181 ~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg 260 (596)
T d1w6sa_ 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG 260 (596)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred cCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccc
Confidence 156999999999998765432110 00112245788887 66888632
Q ss_pred ---------------CCCeEEEEccCC-cEEEEecCC----c-ccccc-------c-cccccccCeEEEccCCeEEEEEC
Q 039428 173 ---------------VSSKIWKVGVEG-QLLSIIRSP----L-FTAKE-------W-YKNVFGLNGIVYHPDGFLIVIHM 223 (335)
Q Consensus 173 ---------------~~~~I~~~d~~g-~~~~~~~~~----~-~~~~~-------~-~~~~~~p~Gia~~~dg~Lyvad~ 223 (335)
....|+.+|++. +....+... + +..+. . ......+.-+..+.+|.+|+-|.
T Consensus 261 ~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr 340 (596)
T d1w6sa_ 261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR 340 (596)
T ss_dssp CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred cccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecC
Confidence 146799999874 443323210 0 00000 0 00011122334455678888888
Q ss_pred CCCEEEEE
Q 039428 224 CSGNLFKI 231 (335)
Q Consensus 224 ~~~~v~~~ 231 (335)
.++++...
T Consensus 341 ~tG~~i~~ 348 (596)
T d1w6sa_ 341 TDGALVSA 348 (596)
T ss_dssp TTCCEEEE
T ss_pred CCCceeee
Confidence 88766543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.29 E-value=1.7 Score=38.68 Aligned_cols=163 Identities=10% Similarity=0.089 Sum_probs=85.0
Q ss_pred EEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCC-CCCceeECCCCc-E-EE--Ee-CCCCeEEE
Q 039428 106 IAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKS-TADDIAVDAEGN-A-YV--TD-VVSSKIWK 179 (335)
Q Consensus 106 i~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~p~~~~vd~~G~-l-yV--~d-~~~~~I~~ 179 (335)
+...+ ++++++...+...+. ..|..+|..+++......-...+- .. ......+.+||+ + |+ ++ ...+.++.
T Consensus 260 ~~W~~-d~~~~~~~~nR~q~~-~~i~~~d~~tg~~~~~~~e~~~~w-v~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~ 336 (465)
T d1xfda1 260 VKWAT-STKVAVTWLNRAQNV-SILTLCDATTGVCTKKHEDESEAW-LHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH 336 (465)
T ss_dssp EEESS-SSEEEEEEEETTSCE-EEEEEEETTTCCEEEEEEEECSSC-CCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred eEEcC-CCeEEEEEEcccccc-ceEEEEcCCCCcEEEEEEEcCCce-EeccCCceeEccCCCeeEEEEeeeecccCceEE
Confidence 44554 677777655433332 578899999987653322111110 11 223567888885 3 33 22 23456676
Q ss_pred EccC-------CcEEEEecCCccccccccccccccCe-EEEccCC-eEEEEECC----CCEEEEEeCCCCceeEEEEecc
Q 039428 180 VGVE-------GQLLSIIRSPLFTAKEWYKNVFGLNG-IVYHPDG-FLIVIHMC----SGNLFKIDIRKEEEEVKLIELR 246 (335)
Q Consensus 180 ~d~~-------g~~~~~~~~~~~~~~~~~~~~~~p~G-ia~~~dg-~Lyvad~~----~~~v~~~d~~~~~~~~~~~~~~ 246 (335)
++.. ++..+.+-.+.+ .... +++++++ .+|++... ...||++++++.+ ..+.+...
T Consensus 337 ~~~~~~~~~~~~~~~~~LT~G~w----------~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~-~~~~lt~~ 405 (465)
T d1xfda1 337 ITVSSSQPNSSNDNIQSITSGDW----------DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF-NRQCLSCD 405 (465)
T ss_dssp EEEECSSCCSSSCCCCBSCCSSS----------CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC-CCBCSSTT
T ss_pred EEeccccccCCCceeEEeccCCc----------eEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCC-cceeeccc
Confidence 6432 222221111111 1122 4789877 88887543 4479999998863 33333211
Q ss_pred CCcCCCCCCeEEEcCCCcEEEEec---CCCeEEEEEcCCC
Q 039428 247 GGSSLSLGDGLALLSPTKLVVAGN---PYPSARLVESSDG 283 (335)
Q Consensus 247 g~~~~~~pdGia~d~~g~l~va~~---~~~~~~v~~~~~~ 283 (335)
. ..-.+-..+.+.++|..||... ......+++..++
T Consensus 406 ~-~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~ 444 (465)
T d1xfda1 406 L-VENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDK 444 (465)
T ss_dssp S-SSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTC
T ss_pred c-CCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCC
Confidence 0 0011245788999998777632 1234555655444
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=94.21 E-value=2 Score=39.30 Aligned_cols=42 Identities=21% Similarity=0.146 Sum_probs=28.9
Q ss_pred eEEEeCCCCeEEEEEecCC-----------C--CccceEEEEECCCCeEEEEeec
Q 039428 105 GIAVDRPRNRLLVAFTDVL-----------G--NKYSALAAYDLSTWKRLFLTQL 146 (335)
Q Consensus 105 Gi~~d~~~g~l~v~~~D~~-----------~--~~~~~v~~~d~~~~~~~~~~~~ 146 (335)
.+++|++.+.+|+...... + .....|+.+|++++++.+..+.
T Consensus 247 ~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~ 301 (573)
T d1kb0a2 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE 301 (573)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred cceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccc
Confidence 4789998899988642211 0 1135799999999998866543
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=94.01 E-value=1.7 Score=37.72 Aligned_cols=166 Identities=13% Similarity=0.177 Sum_probs=88.9
Q ss_pred ceeeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecC---C---cCCCCcceEEEeCCC-CeEEEEEec
Q 039428 50 LCETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKED---D---VVGNATMGIAVDRPR-NRLLVAFTD 121 (335)
Q Consensus 50 ~pegia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~---~---~~~~~p~Gi~~d~~~-g~l~v~~~D 121 (335)
+..+|+++|+ .+++|+....+.|++=+. .|+ .|.... . ........|++||.+ +++|++..+
T Consensus 13 ~~~~i~~~P~~~~~~ya~~~~gGv~~S~d-gG~---------tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~ 82 (427)
T d2ebsa1 13 YITGIVAHPKTKDLLYARTDIGGAYRWDA-GTS---------KWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGR 82 (427)
T ss_dssp CEEEEEECSSSTTCEEEEESSSCEEEEET-TTT---------EEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECS
T ss_pred cEEEEEECCCCCCEEEEEecCCCEEEEEC-CCC---------ceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEecc
Confidence 4679999998 456667666678998864 354 132111 1 001234679999854 678887544
Q ss_pred CCCCccceEEEEECCCCeEEEEeecCCC--c--cCCCCCCceeECCC--CcEEEEeCCCCeEEEEccCCcEEEEecCCcc
Q 039428 122 VLGNKYSALAAYDLSTWKRLFLTQLSGK--S--EEKSTADDIAVDAE--GNAYVTDVVSSKIWKVGVEGQLLSIIRSPLF 195 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~--~~~~~p~~~~vd~~--G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~ 195 (335)
..+.....|++ ..++|+.-........ . ........+++||. ..+|++. ..+.|++-+-.|+.-..+..
T Consensus 83 ~~~~~~~gi~~-S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~-~~~gl~~S~D~G~tW~~~~~--- 157 (427)
T d2ebsa1 83 YVGDEWAAFYV-SEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT-RTEGIWKSSDRAKTWTNVTS--- 157 (427)
T ss_dssp CTTSSCCEEEE-ESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEEC-SSSCEEEESSTTSSCEECTT---
T ss_pred ccCCcCccEEE-eCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccc-cccceeeecCCCceeeeccc---
Confidence 32222134554 4456654422221111 0 01233456999986 3588864 34568876555543221110
Q ss_pred ccccccccccccCeEEEccCC--eEEEEECCCCEEEEE
Q 039428 196 TAKEWYKNVFGLNGIVYHPDG--FLIVIHMCSGNLFKI 231 (335)
Q Consensus 196 ~~~~~~~~~~~p~Gia~~~dg--~Lyvad~~~~~v~~~ 231 (335)
.+..........-|+++|.. .||++....+.|+|=
T Consensus 158 -~~~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~giy~S 194 (427)
T d2ebsa1 158 -IPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYVT 194 (427)
T ss_dssp -SSCCCCSSSCEEEEEECTTSTTCEEEEESSTTCEEEE
T ss_pred -CcccccCCccceEEEecccccceeeeeeeecccceec
Confidence 01001111224568888854 788887777778764
|
| >d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Tachylectin-2 family: Tachylectin-2 domain: Tachylectin-2 species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=93.97 E-value=1 Score=35.18 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=81.4
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCC--eEEE--EeecCCCcc-CCCCCCceeECCCCcEEEEeCCCCeEE
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW--KRLF--LTQLSGKSE-EKSTADDIAVDAEGNAYVTDVVSSKIW 178 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~--~~~~--~~~~~~~~~-~~~~p~~~~vd~~G~lyV~d~~~~~I~ 178 (335)
.=|+++| +|+||++..+ .+++=.+.+. +..+ ...+ +. +=+...=+-|||+|.+|+... +.+|
T Consensus 43 ~~i~fsP-~G~LyaVr~~-------~lY~Gp~~s~~nq~wf~~atrI---G~ggWn~FkflffdP~G~LyaVt~--~~LY 109 (235)
T d1tl2a_ 43 KFLFLSP-GGELYGVLND-------KIYKGTPPTHDNDNWMGRAKKI---GNGGWNQFQFLFFDPNGYLYAVSK--DKLY 109 (235)
T ss_dssp SEEEECT-TSCEEEEETT-------EEEEESCCCSTTCCHHHHCEEE---ECSCGGGCSEEEECTTSCEEEEET--TEEE
T ss_pred eEEEECC-CCcEEEEECC-------eEEECCCCCcchHHHHHhhhhc---ccCcccceEEEEECCCceEEEecC--ccee
Confidence 4588997 8999987542 3666544332 1100 0000 00 123344488999999999863 6999
Q ss_pred EEccCCcEEEEecCCcccccc--ccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCC-c----eeEEEEeccCCcCC
Q 039428 179 KVGVEGQLLSIIRSPLFTAKE--WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE-E----EEVKLIELRGGSSL 251 (335)
Q Consensus 179 ~~d~~g~~~~~~~~~~~~~~~--~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~-~----~~~~~~~~~g~~~~ 251 (335)
|=.|-..... .|..... ....=..-.-|-|+|+|.||.... ++++|-.+-.+ . .....+...+ -
T Consensus 110 r~~pPtn~~q----~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~~--~~l~k~~pP~~~~d~WL~~st~igr~~---w 180 (235)
T d1tl2a_ 110 KASPPQSDTD----NWIARATEVGSGGWSGFKFLFFHPNGYLYAVHG--QQFYKALPPVSNQDNWLARATKIGQGG---W 180 (235)
T ss_dssp EESCCCSTTC----CHHHHSEEEECSSGGGEEEEEECTTSCEEEEET--TEEEEECCCSSTTCCHHHHCEEEESSS---G
T ss_pred cCCcCcccch----hhhhhhhhhccCCcCceeEEEECCCceEEEEEC--CcEEEcCCCCCCCchhhhhhhhhccCc---c
Confidence 9876543211 1111000 000111245789999999997743 35666554332 1 1223344222 2
Q ss_pred CCCCeEEEcCCCcEEEEec
Q 039428 252 SLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 252 ~~pdGia~d~~g~l~va~~ 270 (335)
..+..+.+.++|+||-+..
T Consensus 181 ~~~~fi~Fs~dG~L~~v~~ 199 (235)
T d1tl2a_ 181 DTFKFLFFSSVGTLFGVQG 199 (235)
T ss_dssp GGEEEEEECTTSCEEEEET
T ss_pred cCceEEEECCCCcEEEEeC
Confidence 3478999999999998865
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.68 E-value=2.5 Score=38.60 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=36.7
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
|......|-+|+. +.+++++.+|.++++ .+-.+.+.... ...| |.+..+|+.||+
T Consensus 469 g~l~TagglVf~G-~~dg~l~A~Da~tGe-~lW~~~l~~~~-~a~P--~ty~~dGkqYi~ 523 (571)
T d2ad6a1 469 GTLYTKGGLVWYA-TLDGYLKALDNKDGK-ELWNFKMPSGG-IGSP--MTYSFKGKQYIG 523 (571)
T ss_dssp BCEEETTTEEEEE-CTTSEEEEEETTTCC-EEEEEECSSCC-CSCC--EEEEETTEEEEE
T ss_pred ceeEecCCEEEEE-CCCCeEEEEECCCCc-EEEEEECCCCc-eecc--eEEEECCEEEEE
Confidence 3334445567765 578899999999876 66666665422 3445 666667988886
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=93.62 E-value=2.6 Score=38.51 Aligned_cols=79 Identities=15% Similarity=0.093 Sum_probs=46.0
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
+.|..+|+.+|++++......+ .++-++.-.|.+.++.+..+.++.+|.+ |+.+..+..+ ....
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p------~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~---------~~~~ 521 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSP------WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG---------TGVV 521 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS---------SCCC
T ss_pred ccEEEeCCCCCceEeeecCCCC------CCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECC---------CCcc
Confidence 3688999999999987655322 1222222244444455677899999986 5665432211 1111
Q ss_pred cCeEEEccCCeEEEE
Q 039428 207 LNGIVYHPDGFLIVI 221 (335)
Q Consensus 207 p~Gia~~~dg~Lyva 221 (335)
..-+++..||..||+
T Consensus 522 ~~P~ty~~~GkQYv~ 536 (573)
T d1kb0a2 522 AAPSTYMVDGRQYVS 536 (573)
T ss_dssp SCCEEEEETTEEEEE
T ss_pred ccCEEEEECCEEEEE
Confidence 223666678866654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=1.5 Score=34.36 Aligned_cols=187 Identities=13% Similarity=0.057 Sum_probs=92.0
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEE
Q 039428 55 KWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYD 134 (335)
Q Consensus 55 a~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d 134 (335)
+++++|++++++..++.|..||..+++ .+. .+.... .....|.++ +..|+.+..| ..|..++
T Consensus 20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~----~~~---~l~~H~---~~V~~v~~~--~~~l~s~s~D------~~i~~~~ 81 (293)
T d1p22a2 20 CLQYDDQKIVSGLRDNTIKIWDKNTLE----CKR---ILTGHT---GSVLCLQYD--ERVIITGSSD------STVRVWD 81 (293)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCC----EEE---EECCCS---SCEEEEECC--SSEEEEEETT------SCEEEEE
T ss_pred EEEEcCCEEEEEeCCCeEEEEECCCCc----EEE---EEecCC---CCEeeeecc--cceeeccccc------ccccccc
Confidence 456788888777889999999965454 122 222111 234556554 3444443222 3588999
Q ss_pred CCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE--EEEecCCccccccccccccccCeEEE
Q 039428 135 LSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL--LSIIRSPLFTAKEWYKNVFGLNGIVY 212 (335)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~--~~~~~~~~~~~~~~~~~~~~p~Gia~ 212 (335)
...+........ ...............++....+.+..++..... .... .+.. ....-...
T Consensus 82 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------~~~~v~~~ 144 (293)
T d1p22a2 82 VNTGEMLNTLIH-------HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR---VLVG-------HRAAVNVV 144 (293)
T ss_dssp SSSCCEEEEECC-------CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEE---EECC-------CSSCEEEE
T ss_pred cccccccccccc-------cccccccccccccceeecccccceeEeeccccccccccc---cccc-------cccccccc
Confidence 988766533222 111122333333344444445555555544321 1100 0000 00111122
Q ss_pred ccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 213 HPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 213 ~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
........+...++.|..+|....+ ....+. +.. ..-..+..++..+++....+.+++.+....
T Consensus 145 ~~~~~~~~~~s~d~~i~~~d~~~~~-~~~~~~--~~~----~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~ 208 (293)
T d1p22a2 145 DFDDKYIVSASGDRTIKVWNTSTCE-FVRTLN--GHK----RGIACLQYRDRLVVSGSSDNTIRLWDIECG 208 (293)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCC-EEEEEE--CCS----SCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred eecccccccccCCCceeeecCCCCc-EEEEEc--ccc----cccccccCCCCeEEEecCCCEEEEEecccc
Confidence 3333344455567888888888764 444443 211 112233334555555444466887776544
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.49 E-value=2 Score=34.08 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=79.1
Q ss_pred ceeeeEEcCCCCEEEEE-ecCC--eEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 50 LCETAKWDDVGRRFLVS-FLDG--GVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~--~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
......|+++|..++.. ...+ .+......... ........ ..............++++ ....+.
T Consensus 84 ~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~g~- 150 (269)
T d2hqsa1 84 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----------IRQVTDGR-SNNTEPTWFPDSQNLAFT-SDQAGR- 150 (269)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC----------EEECCCCS-SCEEEEEECTTSSEEEEE-ECTTSS-
T ss_pred ccccceecCCCCeeeEeeecCCccceeeccccccc----------ceeeeecc-ccccccccccccccceec-ccccCC-
Confidence 45677899999877766 3332 33444321111 11111101 112222333334444443 222222
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEE-Ee-CCCCeEEEEccCCcEEEEecCCcccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYV-TD-VVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV-~d-~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
..|..++.+++........ ..........++|. ++. +. .....|+..+.++...+.....
T Consensus 151 -~~i~~~~~~~~~~~~~~~~------~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------- 213 (269)
T d2hqsa1 151 -PQVYKVNINGGAPQRITWE------GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST---------- 213 (269)
T ss_dssp -CEEEEEETTSSCCEECCCS------SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS----------
T ss_pred -ceEeeeecccccceeeecc------cccccccccccccceeEEEeecCCceeeeEeecccccceEeecC----------
Confidence 3588888887644321111 22333456788886 333 32 2345777888776655432211
Q ss_pred ccccCeEEEccCC-eEEE-EEC-CCCEEEEEeCCCC
Q 039428 204 VFGLNGIVYHPDG-FLIV-IHM-CSGNLFKIDIRKE 236 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyv-ad~-~~~~v~~~d~~~~ 236 (335)
..-...+++||| .|++ ++. ....|+++++++.
T Consensus 214 -~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 214 -FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 248 (269)
T ss_dssp -SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred -ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 112356899999 6644 333 2457999999987
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.33 E-value=4 Score=37.24 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=33.8
Q ss_pred CCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 215 DGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 215 dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
.|-+|+ -+.++.++.+|.++++ .+-.+.+.... ...| |.+..+|+-||+
T Consensus 497 gglVF~-Gt~dg~l~A~Da~TGe-~LW~~~~~~~~-~~~P--~ty~~~G~qYv~ 545 (582)
T d1flga_ 497 GNLVFT-GTGDGYFKAFDAKSGK-ELWKFQTGSGI-VSPP--ITWEQDGEQYLG 545 (582)
T ss_dssp TTEEEE-ECTTSEEEEEETTTCC-EEEEEECSSCC-CSCC--EEEEETTEEEEE
T ss_pred CCeEEE-eCCCCeEEEEECCCCc-EeEEEECCCCc-cccC--EEEEECCEEEEE
Confidence 345565 5678899999999986 66667664422 3445 777778887766
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.18 E-value=2.2 Score=33.82 Aligned_cols=193 Identities=15% Similarity=0.153 Sum_probs=94.3
Q ss_pred eeeEEcCCCCEEEEE-ec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 52 ETAKWDDVGRRFLVS-FL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
..++|+|||+.+... .. ...++..+.. +.. .. .+.... ........+++...+... ....+. .
T Consensus 42 ~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~-~~~----~~--~~~~~~----~~~~~~~~spdg~~i~~~-~~~~~~--~ 107 (269)
T d2hqsa1 42 MSPAWSPDGSKLAYVTFESGRSALVIQTLA-NGA----VR--QVASFP----RHNGAPAFSPDGSKLAFA-LSKTGS--L 107 (269)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETT-TCC----EE--EEECCS----SCEEEEEECTTSSEEEEE-ECTTSS--C
T ss_pred eeeEECCCCCEEEEEEeeccCcceeeeecc-cCc----ee--EEeeee----cccccceecCCCCeeeEe-eecCCc--c
Confidence 578999999977665 32 2468888753 431 11 122122 244567778744444432 322222 2
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC--cEEEEeC-CCCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG--NAYVTDV-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G--~lyV~d~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
.+..+............. ...........++ ..+++.. ....|++.+.++.....+.. ...
T Consensus 108 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~----------~~~ 171 (269)
T d2hqsa1 108 NLYVMDLASGQIRQVTDG------RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW----------EGS 171 (269)
T ss_dssp EEEEEETTTCCEEECCCC------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC----------SSS
T ss_pred ceeecccccccceeeeec------cccccccccccccccceecccccCCceEeeeecccccceeeec----------ccc
Confidence 344444443333211111 1111122333443 2344332 24578888887654332111 011
Q ss_pred ccCeEEEccCC-eEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-E-EEEec-CCCeEEEEE
Q 039428 206 GLNGIVYHPDG-FLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-L-VVAGN-PYPSARLVE 279 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l-~va~~-~~~~~~v~~ 279 (335)
......++|+| .+++....+ ..++..+..++ ..+.....+ .-....+.|||+ | |.+.. +...+.+++
T Consensus 172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~-----~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~ 244 (269)
T d2hqsa1 172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG--GVQVLSSTF-----LDETPSLAPNGTMVIYSSSQGMGSVLNLVS 244 (269)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC--CEEECCCSS-----SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred cccccccccccceeEEEeecCCceeeeEeecccc--cceEeecCc-----cccceEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 23456889999 555444333 36777777766 444433222 123567889985 3 44432 223456665
Q ss_pred cC
Q 039428 280 SS 281 (335)
Q Consensus 280 ~~ 281 (335)
.+
T Consensus 245 ~d 246 (269)
T d2hqsa1 245 TD 246 (269)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.35 E-value=14 Score=32.30 Aligned_cols=175 Identities=5% Similarity=0.041 Sum_probs=81.7
Q ss_pred ceeeeEEcCCCCEEEEEec-C---CeEEEEECCCCCCCcceeeeeEEee--cCCcCCCCcceEEEeCCCCeE-EEEEecC
Q 039428 50 LCETAKWDDVGRRFLVSFL-D---GGVGQVLVPDEYSPGTVLEEVKLVK--EDDVVGNATMGIAVDRPRNRL-LVAFTDV 122 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~-~---~~I~~~d~~~g~~~~~v~~~~~~~~--~~~~~~~~p~Gi~~d~~~g~l-~v~~~D~ 122 (335)
+...+.|.+++++++.... . ..|..+|..++. ... +.. .+...........+.+++..+ |+-..+.
T Consensus 256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~-----~~~--~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~ 328 (465)
T d1xfda1 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV-----CTK--KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ 328 (465)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC-----EEE--EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCc-----EEE--EEEEcCCceEeccCCceeEccCCCeeEEEEeeee
Confidence 4556889999886666532 2 368889876554 221 221 111111111234566534433 2321222
Q ss_pred CCCccceEEEEECCCCeEE----EEeecCCCccCCCCCCc-eeECCCC-cEEEEeC----CCCeEEEEccCCcEEEEecC
Q 039428 123 LGNKYSALAAYDLSTWKRL----FLTQLSGKSEEKSTADD-IAVDAEG-NAYVTDV----VSSKIWKVGVEGQLLSIIRS 192 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~p~~-~~vd~~G-~lyV~d~----~~~~I~~~d~~g~~~~~~~~ 192 (335)
.+. ..++.++....... ....+. .+.-...+ +++|.++ .+|++.. ....+|+++.+|.....
T Consensus 329 ~g~--~~ly~~~~~~~~~~~~~~~~~~LT---~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~--- 400 (465)
T d1xfda1 329 GGR--GKFYHITVSSSQPNSSNDNIQSIT---SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQ--- 400 (465)
T ss_dssp SSS--SCEEEEEEECSSCCSSSCCCCBSC---CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCB---
T ss_pred ccc--CceEEEEeccccccCCCceeEEec---cCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcce---
Confidence 222 23665543211100 001111 11111122 4688875 6888744 24469999988754321
Q ss_pred CccccccccccccccCeEEEccCCeEEEEECCC---CEEEEEeCCCCceeEEEE
Q 039428 193 PLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCS---GNLFKIDIRKEEEEVKLI 243 (335)
Q Consensus 193 ~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~---~~v~~~d~~~~~~~~~~~ 243 (335)
.++.. .....+-+.+.++|+|.-||-.+.+ -.+..++...++ .+..+
T Consensus 401 -~lt~~--~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~-~~~~L 450 (465)
T d1xfda1 401 -CLSCD--LVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKK-KMFDL 450 (465)
T ss_dssp -CSSTT--SSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCC-EEEEE
T ss_pred -eeccc--cCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCC-EEEEE
Confidence 11100 0012346789999999655544332 244455544443 33333
|